Psyllid ID: psy11418
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 553 | 2.2.26 [Sep-21-2011] | |||||||
| Q99MN1 | 595 | Lysine--tRNA ligase OS=Mu | yes | N/A | 0.412 | 0.383 | 0.703 | 1e-123 | |
| Q15046 | 597 | Lysine--tRNA ligase OS=Ho | yes | N/A | 0.412 | 0.381 | 0.700 | 1e-123 | |
| P37879 | 597 | Lysine--tRNA ligase OS=Cr | yes | N/A | 0.517 | 0.479 | 0.700 | 1e-122 | |
| Q22099 | 572 | Lysine--tRNA ligase OS=Ca | yes | N/A | 0.515 | 0.498 | 0.639 | 1e-111 | |
| Q6F2U9 | 602 | Lysine--tRNA ligase OS=Or | yes | N/A | 0.518 | 0.476 | 0.564 | 1e-100 | |
| P15180 | 591 | Lysine--tRNA ligase, cyto | yes | N/A | 0.517 | 0.483 | 0.575 | 3e-98 | |
| Q9UUE6 | 591 | Lysine--tRNA ligase, cyto | yes | N/A | 0.524 | 0.490 | 0.579 | 2e-96 | |
| Q9ZPI1 | 626 | Lysine--tRNA ligase OS=Ar | yes | N/A | 0.564 | 0.498 | 0.522 | 2e-96 | |
| Q43776 | 588 | Lysine--tRNA ligase OS=So | N/A | N/A | 0.515 | 0.484 | 0.509 | 2e-89 | |
| Q8SS56 | 440 | Probable lysine--tRNA lig | yes | N/A | 0.405 | 0.509 | 0.576 | 1e-76 |
| >sp|Q99MN1|SYK_MOUSE Lysine--tRNA ligase OS=Mus musculus GN=Kars PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 442 bits (1136), Expect = e-123, Method: Compositional matrix adjust.
Identities = 202/287 (70%), Positives = 249/287 (86%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVH 100
++++++RS AV+Q+K G PYPHKF V SL FI++YS L L +VTL VAGR+H
Sbjct: 72 NQYYKIRSQAVQQLKVTGEDPYPHKFHVDISLTQFIQEYSHLQPGDHLTDVTLKVAGRIH 131
Query: 101 AIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK 160
A R SG KL+FYDLRGEG+K+QVMAN+R Y+SEEEF K++RGDIIGV G+PGKTKK
Sbjct: 132 AKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVHINNKLRRGDIIGVEGNPGKTKK 191
Query: 161 GELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAY 220
GELSIIP+++TLLSPCLHMLPH+HFG+KDKETR+RQRYLDL++N+ +R KFIVR++II Y
Sbjct: 192 GELSIIPQEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIVRSKIITY 251
Query: 221 VRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLD 280
+R +LD LGFLE+ETPMMN+I GGA AKPF+T+HN+L+M+LYMRIAPELY KMLVVGG+D
Sbjct: 252 IRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGID 311
Query: 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
RVYE+GRQFRNEGIDLTHNPEFTTCEFYMAYADY+DLM +TE ++SG
Sbjct: 312 RVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMLSG 358
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Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. Mus musculus (taxid: 10090) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 6 |
| >sp|Q15046|SYK_HUMAN Lysine--tRNA ligase OS=Homo sapiens GN=KARS PE=1 SV=3 | Back alignment and function description |
|---|
Score = 441 bits (1134), Expect = e-123, Method: Compositional matrix adjust.
Identities = 201/287 (70%), Positives = 248/287 (86%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVH 100
++++++RS A+ Q+K G PYPHKF V SL DFI+KYS L L ++TL VAGR+H
Sbjct: 74 NQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIH 133
Query: 101 AIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK 160
A R SG KL+FYDLRGEG+K+QVMAN+R Y+SEEEF K++RGDIIGV G+PGKTKK
Sbjct: 134 AKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKK 193
Query: 161 GELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAY 220
GELSIIP ++TLLSPCLHMLPH+HFG+KDKETR+RQRYLDL++N+ +R KFI+R++II Y
Sbjct: 194 GELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITY 253
Query: 221 VRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLD 280
+R +LD LGFLE+ETPMMN+I GGA AKPF+T+HN+L+M+LYMRIAPELY KMLVVGG+D
Sbjct: 254 IRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGID 313
Query: 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
RVYE+GRQFRNEGIDLTHNPEFTTCEFYMAYADY+DLM +TE ++SG
Sbjct: 314 RVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSG 360
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Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. When secreted, acts as a signaling molecule that induces immune response through the activation of monocyte/macrophages. Catalyzes the synthesis of diadenosine oligophosphate (Ap4A), a signaling molecule involved in the activation of MITF transcriptional activity. Interacts with HIV-1 virus GAG protein, facilitating the selective packaging of tRNA(3)(Lys), the primer for reverse transcription initiation. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 |
| >sp|P37879|SYK_CRIGR Lysine--tRNA ligase OS=Cricetulus griseus GN=KARS PE=1 SV=1 | Back alignment and function description |
|---|
Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust.
Identities = 201/287 (70%), Positives = 247/287 (86%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVH 100
++++++RS A+ Q+K G PYPHKF V SL FI++YS L L ++TL VAGR+H
Sbjct: 74 NQYYKIRSQAIHQLKVSGEDPYPHKFHVDISLTQFIQEYSQLQPGDHLTDITLKVAGRIH 133
Query: 101 AIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK 160
A R SG KL+FYDLRGEG+K+QVMAN+R Y+SEEEF K++RGDIIGV G+PGKTKK
Sbjct: 134 AKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVRINNKLRRGDIIGVQGNPGKTKK 193
Query: 161 GELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAY 220
GELSIIP ++TLLSPCLHMLPH+HFG+KDKETR+RQRYLDL++N+ +R KFIVRA+II Y
Sbjct: 194 GELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIVRAKIITY 253
Query: 221 VRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLD 280
+R +LD LGFLE+ETPMMN+I GGA AKPF+T+HN+L+M+LYMRIAPELY KMLVVGG+D
Sbjct: 254 IRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGID 313
Query: 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
RVYE+GRQFRNEGIDLTHNPEFTTCEFYMAYADY+DLM +TE ++SG
Sbjct: 314 RVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMLSG 360
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Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. Cricetulus griseus (taxid: 10029) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q22099|SYK_CAEEL Lysine--tRNA ligase OS=Caenorhabditis elegans GN=krs-1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 183/286 (63%), Positives = 235/286 (82%), Gaps = 1/286 (0%)
Query: 42 EFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHA 101
E+F +R +E + G +P+PHKF VT SL DFI KY+ L QV+E + +SVAGR+H+
Sbjct: 55 EYFNMRVRMIEARRAAGDNPFPHKFNVTISLTDFITKYTPLEKEQVVEEI-VSVAGRIHS 113
Query: 102 IRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKG 161
RESG+KL+FYD+ GEG IQ+MANA+ + + +F + +IKRGDI+G TG +TK G
Sbjct: 114 KRESGSKLVFYDIHGEGTHIQIMANAKFHTGDVDFVTLHDRIKRGDIVGFTGRATRTKAG 173
Query: 162 ELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYV 221
ELS+IP ++ L+PCLHMLPH HFG+KDKE RFR+RYLDL++N R++ F++R++II ++
Sbjct: 174 ELSLIPNEILQLTPCLHMLPHSHFGLKDKELRFRKRYLDLILNPRVKDNFVIRSKIITFL 233
Query: 222 RRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDR 281
RRYLD+LGFLEVETP+MN IAGGATAKPF+THHNDL+M+L++R+APELY KMLVVGG+DR
Sbjct: 234 RRYLDNLGFLEVETPIMNQIAGGATAKPFITHHNDLDMNLFLRVAPELYHKMLVVGGIDR 293
Query: 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
VYEVGR FRNEGIDLTHNPEFTTCEFYMAYADY D++ LTEDL+S
Sbjct: 294 VYEVGRLFRNEGIDLTHNPEFTTCEFYMAYADYEDVIQLTEDLLSS 339
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Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. Caenorhabditis elegans (taxid: 6239) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q6F2U9|SYK_ORYSJ Lysine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os03g0586800 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/308 (56%), Positives = 225/308 (73%), Gaps = 21/308 (6%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVH 100
++++ R A++ +K G +PYPHKF ++ D+IEKY + L +VT +AGR+
Sbjct: 80 TQYYENRLKALDSLKATGVNPYPHKFLANITVADYIEKYKSMNVGDKLVDVTECLAGRIM 139
Query: 101 AIRESGTKLMFYDLRGEGLKIQVMANARMYQSEE-EFASDLVKIKRGDIIGVTGSPGKTK 159
R +KL+FYDL G G K+QV A+AR + E+ EF +KRGDI+GV G PGK+K
Sbjct: 140 TKRAQSSKLLFYDLYGGGEKVQVFADARTSELEDNEFIKFHSTLKRGDIVGVCGYPGKSK 199
Query: 160 KGELSIIPKKLTLLSPCLHMLPHMH--------------------FGVKDKETRFRQRYL 199
+GELSI PKK+ +LSPCLHM+P + ++D+ETR+RQRYL
Sbjct: 200 RGELSIFPKKIVVLSPCLHMMPRQKSEGSAVPTPWAPGMGRNIEKYVLRDQETRYRQRYL 259
Query: 200 DLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNM 259
DLM+N +RH F R+++++++R++LD L FLEVETPMMNMIAGGA A+PFVTHHN+LNM
Sbjct: 260 DLMVNHEVRHIFKTRSKVVSFIRKFLDGLDFLEVETPMMNMIAGGAAARPFVTHHNELNM 319
Query: 260 DLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMH 319
LYMRIAPELYLK LVVGGLDRVYE+G+QFRNEGIDLTHNPEFTTCEFYMAYADYNDL+
Sbjct: 320 RLYMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYADYNDLIE 379
Query: 320 LTEDLISG 327
LTE ++SG
Sbjct: 380 LTETMLSG 387
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Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 |
| >sp|P15180|SYKC_YEAST Lysine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KRS1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 359 bits (922), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 168/292 (57%), Positives = 225/292 (77%), Gaps = 6/292 (2%)
Query: 41 SEFFRLRSAAVEQM-KEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRV 99
S++F RS ++++ K P+PYPHKF V+ S +F+ KY+ L + L +S+AGR+
Sbjct: 71 SQYFETRSRQIQELRKTHEPNPYPHKFHVSISNPEFLAKYAHLKKGETLPEEKVSIAGRI 130
Query: 100 HAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK 159
HA RESG+KL FY L G+G+++Q+M+ + Y + + D +KRGDI+GV G G+T+
Sbjct: 131 HAKRESGSKLKFYVLHGDGVEVQLMSQLQDYCDPDSYEKDHDLLKRGDIVGVEGYVGRTQ 190
Query: 160 -----KGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVR 214
+GE+S+ ++ LL+PCLHMLP HFG KD+ETR+R+RYLDL++N+ R++FI R
Sbjct: 191 PKKGGEGEVSVFVSRVQLLTPCLHMLPADHFGFKDQETRYRKRYLDLIMNKDARNRFITR 250
Query: 215 AQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKML 274
++II Y+RR+LD F+EVETPMMN+IAGGATAKPF+THHNDL+MD+YMRIAPEL+LK L
Sbjct: 251 SEIIRYIRRFLDQRKFIEVETPMMNVIAGGATAKPFITHHNDLDMDMYMRIAPELFLKQL 310
Query: 275 VVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
VVGGLDRVYE+GRQFRNEGID+THNPEFTTCEFY AYAD DLM +TE + S
Sbjct: 311 VVGGLDRVYEIGRQFRNEGIDMTHNPEFTTCEFYQAYADVYDLMDMTELMFS 362
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Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q9UUE6|SYKC_SCHPO Lysine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=krs1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (907), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 172/297 (57%), Positives = 221/297 (74%), Gaps = 7/297 (2%)
Query: 41 SEFFRLRSAAVEQMKE-QGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRV 99
S++F RS + ++++ + P+PYPHKF VT +L +FI KY L + V ++VAGRV
Sbjct: 73 SQYFENRSRTIMELRQTKDPNPYPHKFQVTITLPEFIAKYEGLARGETKPEVEVAVAGRV 132
Query: 100 HAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK 159
+R +G KL FY++ +G K+QVM A+ + + FA+ ++RGDIIG+ G PG++
Sbjct: 133 LGLRTAGNKLRFYEIHADGKKLQVMCQAQDADTVD-FAAQHEHLRRGDIIGIRGYPGRSN 191
Query: 160 -----KGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVR 214
GELSI ++ LLSPCL MLP H+G+KD E R RQRYLDL++N R +F++R
Sbjct: 192 PKGRADGELSIFARQCVLLSPCLRMLPKEHYGLKDLEIRHRQRYLDLIMNRSTRDRFVMR 251
Query: 215 AQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKML 274
++II Y+R + DS F+EVETPMMNMIAGGATAKPFVTHHNDL+MDLYMRIAPELYLKML
Sbjct: 252 SRIIQYIRHFFDSRDFMEVETPMMNMIAGGATAKPFVTHHNDLDMDLYMRIAPELYLKML 311
Query: 275 VVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKED 331
VVGGLDRVYE+GRQFRNEG DLTHNPEFT+ EFY AYADY DLM TE+L+SG +D
Sbjct: 312 VVGGLDRVYEIGRQFRNEGADLTHNPEFTSIEFYQAYADYYDLMDTTEELLSGLVKD 368
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Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q9ZPI1|SYK_ARATH Lysine--tRNA ligase OS=Arabidopsis thaliana GN=At3g11710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (906), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 175/335 (52%), Positives = 230/335 (68%), Gaps = 23/335 (6%)
Query: 15 AENSQQHTTAQTVTHLNTNYTQQCLTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLED 74
AE ++Q A + + + ++ ++++ R + K +G +PYPHKF V+ S+
Sbjct: 63 AEKAKQAPKASSQKAVAAD-DEEMDATQYYENRLKYLAAEKAKGENPYPHKFAVSMSIPK 121
Query: 75 FIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANA-RMYQSE 133
+IE Y L + +EN S+AGR+ + R S +KL FYDL G+ K+QVMA+A + E
Sbjct: 122 YIETYGSLNNGDHVENAEESLAGRIMSKRSSSSKLFFYDLHGDDFKVQVMADASKSGLDE 181
Query: 134 EEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMH--------- 184
EF KRGDI+GV G PGKTK+GELSI P+ LLS CLHM+P
Sbjct: 182 AEFLKLHSNAKRGDIVGVIGFPGKTKRGELSIFPRSFILLSHCLHMMPRKADNVNAKKPE 241
Query: 185 ------------FGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLE 232
+ +KD+E+R+RQR+LD+++N +R F RA+II+YVRR+LD+ FLE
Sbjct: 242 IWVPGQTRNPEAYVLKDQESRYRQRHLDMILNVEVRQIFRTRAKIISYVRRFLDNKNFLE 301
Query: 233 VETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNE 292
VETPMMNMIAGGA A+PFVTHHNDL+M LYMRIAPELYLK L+VGGL+RVYE+G+QFRNE
Sbjct: 302 VETPMMNMIAGGAAARPFVTHHNDLDMRLYMRIAPELYLKQLIVGGLERVYEIGKQFRNE 361
Query: 293 GIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
GIDLTHNPEFTTCEFYMA+ADYNDLM +TE ++SG
Sbjct: 362 GIDLTHNPEFTTCEFYMAFADYNDLMEMTEVMLSG 396
|
Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q43776|SYK_SOLLC Lysine--tRNA ligase OS=Solanum lycopersicum GN=LYSRS PE=2 SV=1 | Back alignment and function description |
|---|
Score = 330 bits (845), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 163/320 (50%), Positives = 222/320 (69%), Gaps = 35/320 (10%)
Query: 45 RLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRE 104
RLR+ +E ++E G +PYPHKF +T S+ +FI +Y+ L + E++ +S+AGRV + R
Sbjct: 61 RLRN--IESLRESGINPYPHKFFITMSIPEFISRYAHLNTGEFPEDIDMSLAGRVISKRA 118
Query: 105 SGTKLMFYDLRGEGLKIQVMANARMYQSEE-EFASDLVKIKRGDIIGVTGSPGKTKKGEL 163
S +KL FY+L G G ++QV+A+AR + +F++ +KRGDIIGV G PGK+K+GEL
Sbjct: 119 SSSKLYFYELLGGGARVQVLASARDSDVDAVQFSNYQSGVKRGDIIGVRGYPGKSKRGEL 178
Query: 164 SIIPKKLTLLSPCLHMLPHM--------------------------------HFGVKDKE 191
SI K +L+PCLHMLP + ++D+E
Sbjct: 179 SIFAKPFIVLAPCLHMLPRRLTSSIVDETRTQNFQGITAYDTWTPGDLRNPESYVLRDQE 238
Query: 192 TRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFV 251
TR+RQRYLDLM+N +R F RA+II+Y+R +LD+L FLEVETP MN+ AGGA+A+PF+
Sbjct: 239 TRYRQRYLDLMMNPEVRALFRTRARIISYIRSFLDNLEFLEVETPSMNLTAGGASARPFI 298
Query: 252 THHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAY 311
THHN+L+ +L +R++PELYLK LVVGG DRVYE+G+ FRNEG+DLTH+PEFT CE YMAY
Sbjct: 299 THHNELDTELLIRVSPELYLKKLVVGGFDRVYELGKHFRNEGMDLTHSPEFTMCELYMAY 358
Query: 312 ADYNDLMHLTEDLISGRKED 331
ADYNDLM LTE L+SG +D
Sbjct: 359 ADYNDLMDLTEQLLSGMVKD 378
|
Solanum lycopersicum (taxid: 4081) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q8SS56|SYKC_ENCCU Probable lysine--tRNA ligase, cytoplasmic OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU04_0580 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 287 bits (735), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 135/234 (57%), Positives = 177/234 (75%), Gaps = 10/234 (4%)
Query: 98 RVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK 157
R+HA + F+ + G +QV+ + + E+ A L +RGD++G TG+PG+
Sbjct: 4 RLHA------RFCFFVVTSNGESLQVVVDTK-EAGREQMAKFL---RRGDVVGFTGNPGR 53
Query: 158 TKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQI 217
T+ E S+ + +L+PCL +P HFG+KD ET +R+RY+DL+IN R++F RAQI
Sbjct: 54 TRTLEASVFATDIIVLTPCLRTIPTEHFGLKDPETIYRKRYMDLLINRESRNRFQKRAQI 113
Query: 218 IAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG 277
I Y+R +LDS GFLEVETPMMN+I GGA AKPF+THHN+L +DLYMR++PELYLK LVVG
Sbjct: 114 IGYIRSFLDSRGFLEVETPMMNLIPGGAAAKPFITHHNELKLDLYMRVSPELYLKKLVVG 173
Query: 278 GLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKED 331
GL+RVYE+G+QFRNEGIDLTHNPEFT+CEFYMAYADYNDLM +TE+LISG E+
Sbjct: 174 GLERVYEIGKQFRNEGIDLTHNPEFTSCEFYMAYADYNDLMEMTEELISGMVEN 227
|
Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 553 | ||||||
| 328712348 | 595 | PREDICTED: lysyl-tRNA synthetase-like is | 0.412 | 0.383 | 0.770 | 1e-134 | |
| 328712346 | 579 | PREDICTED: lysyl-tRNA synthetase-like is | 0.412 | 0.393 | 0.770 | 1e-134 | |
| 328712350 | 610 | PREDICTED: lysyl-tRNA synthetase-like is | 0.412 | 0.373 | 0.770 | 1e-134 | |
| 357607828 | 579 | hypothetical protein KGM_09581 [Danaus p | 0.564 | 0.538 | 0.685 | 1e-130 | |
| 389611239 | 578 | lysyl-tRNA synthetase [Papilio polytes] | 0.549 | 0.525 | 0.709 | 1e-130 | |
| 170064641 | 585 | lysyl-tRNA synthetase [Culex quinquefasc | 0.518 | 0.490 | 0.743 | 1e-129 | |
| 312371338 | 1172 | hypothetical protein AND_22229 [Anophele | 0.518 | 0.244 | 0.743 | 1e-129 | |
| 198467359 | 584 | GA11433 [Drosophila pseudoobscura pseudo | 0.518 | 0.491 | 0.739 | 1e-129 | |
| 350401411 | 588 | PREDICTED: lysyl-tRNA synthetase-like [B | 0.518 | 0.488 | 0.743 | 1e-128 | |
| 383857048 | 586 | PREDICTED: lysine--tRNA ligase-like [Meg | 0.558 | 0.527 | 0.699 | 1e-128 |
| >gi|328712348|ref|XP_001951614.2| PREDICTED: lysyl-tRNA synthetase-like isoform 1 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 221/287 (77%), Positives = 256/287 (89%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVH 100
+EFF LR + QMK+ G PYPHKF VT SLE+FIEK+S L + Q+L + SVAGRVH
Sbjct: 74 NEFFSLRLQTIAQMKKDGEEPYPHKFNVTISLEEFIEKFSSLAETQILHDEKYSVAGRVH 133
Query: 101 AIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK 160
AIRESG KL+FYDLRGEG+KIQVMANA+ Y +EE F SD KI+RGDIIGVTGSPGKTKK
Sbjct: 134 AIRESGPKLIFYDLRGEGVKIQVMANAKQYTTEESFLSDTSKIRRGDIIGVTGSPGKTKK 193
Query: 161 GELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAY 220
GELSI P+ + LL+PCLHMLPHMH+G+KDKETR+RQRYLDL+INE +R+KFIVRA++I+Y
Sbjct: 194 GELSIFPQNIKLLTPCLHMLPHMHYGLKDKETRYRQRYLDLIINEHVRNKFIVRAKVISY 253
Query: 221 VRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLD 280
VRR+LD+LGFLE+ETPMMNMIAGGATAKPF+THHNDLNMDL+MR+APELY KMLVVGG+D
Sbjct: 254 VRRFLDNLGFLEIETPMMNMIAGGATAKPFITHHNDLNMDLFMRVAPELYHKMLVVGGID 313
Query: 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
RVYE+GRQFRNE IDLTHNPEFTTCEFYMAYADYNDLM +TEDL+SG
Sbjct: 314 RVYEIGRQFRNEAIDLTHNPEFTTCEFYMAYADYNDLMQITEDLLSG 360
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328712346|ref|XP_003244783.1| PREDICTED: lysyl-tRNA synthetase-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 221/287 (77%), Positives = 256/287 (89%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVH 100
+EFF LR + QMK+ G PYPHKF VT SLE+FIEK+S L + Q+L + SVAGRVH
Sbjct: 58 NEFFSLRLQTIAQMKKDGEEPYPHKFNVTISLEEFIEKFSSLAETQILHDEKYSVAGRVH 117
Query: 101 AIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK 160
AIRESG KL+FYDLRGEG+KIQVMANA+ Y +EE F SD KI+RGDIIGVTGSPGKTKK
Sbjct: 118 AIRESGPKLIFYDLRGEGVKIQVMANAKQYTTEESFLSDTSKIRRGDIIGVTGSPGKTKK 177
Query: 161 GELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAY 220
GELSI P+ + LL+PCLHMLPHMH+G+KDKETR+RQRYLDL+INE +R+KFIVRA++I+Y
Sbjct: 178 GELSIFPQNIKLLTPCLHMLPHMHYGLKDKETRYRQRYLDLIINEHVRNKFIVRAKVISY 237
Query: 221 VRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLD 280
VRR+LD+LGFLE+ETPMMNMIAGGATAKPF+THHNDLNMDL+MR+APELY KMLVVGG+D
Sbjct: 238 VRRFLDNLGFLEIETPMMNMIAGGATAKPFITHHNDLNMDLFMRVAPELYHKMLVVGGID 297
Query: 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
RVYE+GRQFRNE IDLTHNPEFTTCEFYMAYADYNDLM +TEDL+SG
Sbjct: 298 RVYEIGRQFRNEAIDLTHNPEFTTCEFYMAYADYNDLMQITEDLLSG 344
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328712350|ref|XP_003244784.1| PREDICTED: lysyl-tRNA synthetase-like isoform 3 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 221/287 (77%), Positives = 256/287 (89%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVH 100
+EFF LR + QMK+ G PYPHKF VT SLE+FIEK+S L + Q+L + SVAGRVH
Sbjct: 89 NEFFSLRLQTIAQMKKDGEEPYPHKFNVTISLEEFIEKFSSLAETQILHDEKYSVAGRVH 148
Query: 101 AIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK 160
AIRESG KL+FYDLRGEG+KIQVMANA+ Y +EE F SD KI+RGDIIGVTGSPGKTKK
Sbjct: 149 AIRESGPKLIFYDLRGEGVKIQVMANAKQYTTEESFLSDTSKIRRGDIIGVTGSPGKTKK 208
Query: 161 GELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAY 220
GELSI P+ + LL+PCLHMLPHMH+G+KDKETR+RQRYLDL+INE +R+KFIVRA++I+Y
Sbjct: 209 GELSIFPQNIKLLTPCLHMLPHMHYGLKDKETRYRQRYLDLIINEHVRNKFIVRAKVISY 268
Query: 221 VRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLD 280
VRR+LD+LGFLE+ETPMMNMIAGGATAKPF+THHNDLNMDL+MR+APELY KMLVVGG+D
Sbjct: 269 VRRFLDNLGFLEIETPMMNMIAGGATAKPFITHHNDLNMDLFMRVAPELYHKMLVVGGID 328
Query: 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
RVYE+GRQFRNE IDLTHNPEFTTCEFYMAYADYNDLM +TEDL+SG
Sbjct: 329 RVYEIGRQFRNEAIDLTHNPEFTTCEFYMAYADYNDLMQITEDLLSG 375
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357607828|gb|EHJ65702.1| hypothetical protein KGM_09581 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 216/315 (68%), Positives = 266/315 (84%), Gaps = 3/315 (0%)
Query: 15 AENSQQHTTAQTVTHLNTNYTQQCLTSEFFRLRSAAVEQMK--EQGPHPYPHKFTVTSSL 72
AE Q A +T ++ +E+++LRS A+ +K + HPYPHKF VTSSL
Sbjct: 28 AEKVAQQPVA-AAEKKSTKAEEEISPNEYYKLRSGAIAALKNGSKADHPYPHKFNVTSSL 86
Query: 73 EDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQS 132
EDFI KY+DL +VLENV LSVAGR+H+IRESG KL+FYD+RGEG+KIQVMANA+MY+S
Sbjct: 87 EDFINKYNDLGSGEVLENVNLSVAGRIHSIRESGAKLIFYDVRGEGVKIQVMANAKMYES 146
Query: 133 EEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKET 192
EE+F +D K++RGDIIG+ G PGKTKKGELS+IPK + LLSPCLHMLPH+HFG+KDKET
Sbjct: 147 EEKFITDTDKLRRGDIIGIVGHPGKTKKGELSVIPKTIKLLSPCLHMLPHLHFGLKDKET 206
Query: 193 RFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVT 252
RFR+RYLDL++N+++R F RA+II+Y+RR+LD++GFLE+ETPMMNMI GGA AKPF+T
Sbjct: 207 RFRKRYLDLILNDKVRQTFYTRAKIISYIRRFLDNMGFLEIETPMMNMIPGGAVAKPFIT 266
Query: 253 HHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA 312
HHN+L+MDLYMRIAPELY KMLVVGGLDRVYE+GRQFRNEGID+THNPEFTTCEFYMAYA
Sbjct: 267 HHNELDMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDMTHNPEFTTCEFYMAYA 326
Query: 313 DYNDLMHLTEDLISG 327
DYNDL+ +TE ++SG
Sbjct: 327 DYNDLITITETMLSG 341
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|389611239|dbj|BAM19231.1| lysyl-tRNA synthetase [Papilio polytes] | Back alignment and taxonomy information |
|---|
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 217/306 (70%), Positives = 262/306 (85%), Gaps = 2/306 (0%)
Query: 24 AQTVTHLNTNYTQQCLTSEFFRLRSAAVEQMK--EQGPHPYPHKFTVTSSLEDFIEKYSD 81
A V +T ++ +E++++RSAAV +K E+ HPYPHKFTV++SLE FI KY
Sbjct: 36 APNVEKKSTKTDEEISPNEYYKIRSAAVAALKTGEREDHPYPHKFTVSTSLEAFINKYIS 95
Query: 82 LPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLV 141
L ++LENVT+SVAGR+H+IRESG KL+FYDLR EG+K+QVMANA+MY+ EE+F D
Sbjct: 96 LNSGEILENVTVSVAGRIHSIRESGAKLIFYDLRAEGVKVQVMANAKMYECEEKFEKDTD 155
Query: 142 KIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDL 201
K+ RGDIIG G PGKTKKGELSIIPK + LLSPCLHMLPH+HFG+KDKETRFR+RYLDL
Sbjct: 156 KLGRGDIIGCVGHPGKTKKGELSIIPKTIKLLSPCLHMLPHLHFGLKDKETRFRKRYLDL 215
Query: 202 MINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDL 261
++N+++R F RA+II+Y+RR+LD++GFLE+ETPMMNMIAGGATAKPFVTHHN+LNMDL
Sbjct: 216 ILNDKVRQTFYTRAKIISYIRRFLDNMGFLEIETPMMNMIAGGATAKPFVTHHNELNMDL 275
Query: 262 YMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLT 321
YMRIAPELY KMLVVGGLDRVYE+GRQFRNEGIDLTHNPEFTTCEFYMAYADYNDL+ +T
Sbjct: 276 YMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLITIT 335
Query: 322 EDLISG 327
E +ISG
Sbjct: 336 ETMISG 341
|
Source: Papilio polytes Species: Papilio polytes Genus: Papilio Family: Papilionidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170064641|ref|XP_001867610.1| lysyl-tRNA synthetase [Culex quinquefasciatus] gi|167881959|gb|EDS45342.1| lysyl-tRNA synthetase [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 214/288 (74%), Positives = 255/288 (88%), Gaps = 1/288 (0%)
Query: 41 SEFFRLRSAAVEQMKEQ-GPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRV 99
+E+F+LRSAAV +K+Q HPYPHKF V+SSLE FIEKY L D +LE +LSVAGR+
Sbjct: 62 NEYFKLRSAAVADLKKQPETHPYPHKFQVSSSLEAFIEKYDGLKDGDMLEGESLSVAGRI 121
Query: 100 HAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK 159
HAIRESG KL+FYDLRGEG+K+QVMANA++Y+SE F D +++RGDI+G+ G PGKTK
Sbjct: 122 HAIRESGGKLIFYDLRGEGVKLQVMANAKLYESEATFGEDTARLRRGDIVGIVGYPGKTK 181
Query: 160 KGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIA 219
KGELS+IPKKL LLSPCLHMLPH+H+G+KDKETRFRQRYLDL++N +R F VRA+II+
Sbjct: 182 KGELSVIPKKLKLLSPCLHMLPHLHYGLKDKETRFRQRYLDLILNNHVRDIFYVRAKIIS 241
Query: 220 YVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL 279
YVR++LD +GFLEVETPMMNMIAGGATAKPF+THHNDLNM+L++RIAPELYLKML VGGL
Sbjct: 242 YVRQFLDGMGFLEVETPMMNMIAGGATAKPFITHHNDLNMNLFLRIAPELYLKMLTVGGL 301
Query: 280 DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
DRVYE+GRQFRNEGIDLTHNPEFTTCEFYMAYADYNDL+ +TE ++SG
Sbjct: 302 DRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLIEMTEKMVSG 349
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|312371338|gb|EFR19556.1| hypothetical protein AND_22229 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 214/288 (74%), Positives = 255/288 (88%), Gaps = 1/288 (0%)
Query: 41 SEFFRLRSAAVEQMKEQ-GPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRV 99
+E+F+LRS AV ++K+ HPYPHKF VT S+ +FIEKY +L + + L+ VTLSVAGRV
Sbjct: 644 NEYFKLRSTAVAELKKDPATHPYPHKFNVTISIGEFIEKYQNLQEGETLDAVTLSVAGRV 703
Query: 100 HAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK 159
HAIRES KL+FYDLRGEGLK+QVMANA+ Y+SEE F + KI+RGDIIGVTG PGKTK
Sbjct: 704 HAIRESSGKLIFYDLRGEGLKLQVMANAKQYESEELFMEETAKIRRGDIIGVTGVPGKTK 763
Query: 160 KGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIA 219
KGELS++PK++ LL+PCLHMLPH+H+G+KDKETRFRQRYLDLM+N +R FIVR++II+
Sbjct: 764 KGELSVMPKRIKLLAPCLHMLPHLHYGLKDKETRFRQRYLDLMLNNNVRDIFIVRSKIIS 823
Query: 220 YVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL 279
YVRR+ D LGFLEVETPMMNMIAGGATAKPF+THHNDLNMDL++RIAPELYLKML VGGL
Sbjct: 824 YVRRFFDQLGFLEVETPMMNMIAGGATAKPFITHHNDLNMDLFLRIAPELYLKMLTVGGL 883
Query: 280 DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
DRVYE+GRQFRNEGIDLTHNPEFTTCEFYMAYADYND++ +T+ L+SG
Sbjct: 884 DRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDIIEITQKLLSG 931
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|198467359|ref|XP_001354371.2| GA11433 [Drosophila pseudoobscura pseudoobscura] gi|198149207|gb|EAL31424.2| GA11433 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
|---|
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 213/288 (73%), Positives = 255/288 (88%), Gaps = 1/288 (0%)
Query: 41 SEFFRLRSAAVEQMKEQG-PHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRV 99
+E+F+LRSAAV+++K+ HPYPHKF V+ SLE+FIE+YS L D + LE V+LSVAGRV
Sbjct: 59 NEYFKLRSAAVQELKQSADSHPYPHKFNVSISLENFIEQYSGLTDGETLEKVSLSVAGRV 118
Query: 100 HAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK 159
HAIRESG KL+FYDLRGEG+K+QVMA+A+ YQ E F +D K++RGDIIGV G PGKTK
Sbjct: 119 HAIRESGAKLIFYDLRGEGVKLQVMASAKSYQPETAFETDTAKLRRGDIIGVKGHPGKTK 178
Query: 160 KGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIA 219
KGELSI+P ++ LLSPCLHMLPH+HFG+KDKETR+RQRYLDL++N ++R F +RA+II+
Sbjct: 179 KGELSIMPTEIKLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNNKVRENFQIRAKIIS 238
Query: 220 YVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL 279
YVR++LD LGFLE+ETPMMNM+AGGATAKPFVTHHN+L MDL+MRIAPELY KMLVVGGL
Sbjct: 239 YVRQFLDRLGFLEIETPMMNMVAGGATAKPFVTHHNELKMDLFMRIAPELYHKMLVVGGL 298
Query: 280 DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
DRVYE+GRQFRNEGIDLTHNPEFTTCEFYMAYADY D+M +TE LISG
Sbjct: 299 DRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYADVMDITEQLISG 346
|
Source: Drosophila pseudoobscura pseudoobscura Species: Drosophila pseudoobscura Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350401411|ref|XP_003486141.1| PREDICTED: lysyl-tRNA synthetase-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 214/288 (74%), Positives = 257/288 (89%), Gaps = 1/288 (0%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSD-LPDAQVLENVTLSVAGRV 99
+E+ +LR+ A++ +K+ +PYPHKF V+ SLE+FIEK+S+ L ++L+N SVAGRV
Sbjct: 61 NEYIKLRTQAIKNLKDANDNPYPHKFHVSISLENFIEKFSNNLKPGEILDNEVYSVAGRV 120
Query: 100 HAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK 159
HAIRESG KL+FYDLRGEG+KIQVMANAR Y+ E+FA+D KI+RGDIIGV G+PGKTK
Sbjct: 121 HAIRESGAKLIFYDLRGEGVKIQVMANARQYKDGEKFATDTSKIRRGDIIGVVGNPGKTK 180
Query: 160 KGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIA 219
KGE SIIP +TLLSPCLHM+P+++FG+KDKETRFRQRYLDL++N++IR F VRA+I+A
Sbjct: 181 KGEFSIIPHSITLLSPCLHMMPNLYFGLKDKETRFRQRYLDLILNDKIRKTFHVRAKIVA 240
Query: 220 YVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL 279
Y+R++LD LGFLEVETPMMNMIAGGATAKPFVTHHN+LNMDLYMRIAPELY KMLVVGGL
Sbjct: 241 YIRKFLDELGFLEVETPMMNMIAGGATAKPFVTHHNELNMDLYMRIAPELYHKMLVVGGL 300
Query: 280 DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
DRVYE+GRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLM +TED++SG
Sbjct: 301 DRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMSITEDMVSG 348
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383857048|ref|XP_003704018.1| PREDICTED: lysine--tRNA ligase-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 221/316 (69%), Positives = 267/316 (84%), Gaps = 7/316 (2%)
Query: 13 SGAENSQQHTTAQTVTHLNTNYTQQCLTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSL 72
+ A N+Q T + N + +E+ +LR+ AV +K +PYPHKF V+ SL
Sbjct: 37 TAATNTQAKATGKKDDEENIS------PNEYIKLRTQAVNHLKSINENPYPHKFHVSISL 90
Query: 73 EDFIEKYSD-LPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQ 131
EDFI+K+S+ L + +VLEN SVAGRV +IRESG KL+FYDLRGEGLKIQVMANAR Y+
Sbjct: 91 EDFIDKFSNILGNGEVLENEVHSVAGRVFSIRESGGKLIFYDLRGEGLKIQVMANARHYE 150
Query: 132 SEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKE 191
+EE+FA+D+ KI+RGDIIGV G+PGKTKKGE SI+P+ +TLLSPCLHMLP ++FG++DKE
Sbjct: 151 NEEKFATDISKIRRGDIIGVVGNPGKTKKGEFSIMPRSITLLSPCLHMLPTLYFGLQDKE 210
Query: 192 TRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFV 251
TRFRQRYLDL++N ++R F VRA+IIAYVR++LD LGFLEVETPMMNMIAGGATAKPF+
Sbjct: 211 TRFRQRYLDLILNNKVRKTFHVRAKIIAYVRKFLDELGFLEVETPMMNMIAGGATAKPFI 270
Query: 252 THHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAY 311
THHN+LNMDL+MRIAPELYLKMLVVGG+DRVYE+GRQFRNEGIDLTHNPEFTTCEFYMAY
Sbjct: 271 THHNELNMDLFMRIAPELYLKMLVVGGMDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAY 330
Query: 312 ADYNDLMHLTEDLISG 327
ADYNDLM +TED+ISG
Sbjct: 331 ADYNDLMSITEDMISG 346
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 553 | ||||||
| UNIPROTKB|F1S458 | 625 | KARS "Lysine--tRNA ligase" [Su | 0.585 | 0.518 | 0.654 | 3.3e-132 | |
| MGI|MGI:1934754 | 595 | Kars "lysyl-tRNA synthetase" [ | 0.558 | 0.519 | 0.664 | 4.2e-132 | |
| UNIPROTKB|Q15046 | 597 | KARS "Lysine--tRNA ligase" [Ho | 0.566 | 0.524 | 0.649 | 1.1e-131 | |
| RGD|1359653 | 626 | Kars "lysyl-tRNA synthetase" [ | 0.566 | 0.5 | 0.650 | 1.1e-131 | |
| UNIPROTKB|D4ABR8 | 597 | Kars "Lysine--tRNA ligase" [Ra | 0.566 | 0.524 | 0.650 | 1.1e-131 | |
| UNIPROTKB|E2RSP4 | 625 | KARS "Lysine--tRNA ligase" [Ca | 0.566 | 0.500 | 0.649 | 6.1e-131 | |
| UNIPROTKB|F1MMK8 | 623 | KARS "Lysine--tRNA ligase" [Bo | 0.518 | 0.460 | 0.700 | 3.3e-130 | |
| UNIPROTKB|E1C3E0 | 581 | KARS "Lysine--tRNA ligase" [Ga | 0.564 | 0.537 | 0.658 | 1.4e-129 | |
| UNIPROTKB|F1NE72 | 590 | KARS "Lysine--tRNA ligase" [Ga | 0.564 | 0.528 | 0.655 | 1.4e-129 | |
| ZFIN|ZDB-GENE-021115-8 | 602 | kars "lysyl-tRNA synthetase" [ | 0.518 | 0.476 | 0.693 | 1.4e-129 |
| UNIPROTKB|F1S458 KARS "Lysine--tRNA ligase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1117 (398.3 bits), Expect = 3.3e-132, Sum P(2) = 3.3e-132
Identities = 216/330 (65%), Positives = 265/330 (80%)
Query: 2 INERIRHLPNLSGAENSQQHTTAQTVTHLNTNYT---QQCLT-SEFFRLRSAAVEQMKEQ 57
I E+ LS + SQ TTA T H N ++ L +++F++RS AV Q+K
Sbjct: 61 IAEKEAKQKELSEKQLSQA-TTAAT-NHTTDNGVAAEEESLDPNQYFKIRSQAVHQLKVS 118
Query: 58 GPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGE 117
G PYPHKF V SL FIE+YS L L ++TL VAGR+HA R SG KL+FYDLRGE
Sbjct: 119 GEDPYPHKFHVDISLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGE 178
Query: 118 GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCL 177
G+K+QVMAN+R Y+SEEEF K++RGDIIGV GSPGKTKKGELSIIP ++TLLSPCL
Sbjct: 179 GVKLQVMANSRNYKSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCL 238
Query: 178 HMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPM 237
HMLPH+HFG+KDKETR+RQRYLDL++N+ +R KFI+R++II Y+R +LD+LGFLE+ETPM
Sbjct: 239 HMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPM 298
Query: 238 MNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLT 297
MN+I GGA AKPF+T+HN+L+M+LYMRIAPELY KMLVVGG+DRVYE+GRQFRNEGIDLT
Sbjct: 299 MNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLT 358
Query: 298 HNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
HNPEFTTCEFYMAYADY+DLM +TE ++SG
Sbjct: 359 HNPEFTTCEFYMAYADYHDLMEITEKMVSG 388
|
|
| MGI|MGI:1934754 Kars "lysyl-tRNA synthetase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1108 (395.1 bits), Expect = 4.2e-132, Sum P(2) = 4.2e-132
Identities = 208/313 (66%), Positives = 258/313 (82%)
Query: 19 QQHTTAQTVTHLNTNYT---QQCLT-SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLED 74
Q + TA H N ++ L ++++++RS AV+Q+K G PYPHKF V SL
Sbjct: 46 QLNQTASAPNHTADNGVGAEEETLDPNQYYKIRSQAVQQLKVTGEDPYPHKFHVDISLTQ 105
Query: 75 FIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEE 134
FI++YS L L +VTL VAGR+HA R SG KL+FYDLRGEG+K+QVMAN+R Y+SEE
Sbjct: 106 FIQEYSHLQPGDHLTDVTLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEE 165
Query: 135 EFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRF 194
EF K++RGDIIGV G+PGKTKKGELSIIP+++TLLSPCLHMLPH+HFG+KDKETR+
Sbjct: 166 EFVHINNKLRRGDIIGVEGNPGKTKKGELSIIPQEITLLSPCLHMLPHLHFGLKDKETRY 225
Query: 195 RQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHH 254
RQRYLDL++N+ +R KFIVR++II Y+R +LD LGFLE+ETPMMN+I GGA AKPF+T+H
Sbjct: 226 RQRYLDLILNDFVRQKFIVRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYH 285
Query: 255 NDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADY 314
N+L+M+LYMRIAPELY KMLVVGG+DRVYE+GRQFRNEGIDLTHNPEFTTCEFYMAYADY
Sbjct: 286 NELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADY 345
Query: 315 NDLMHLTEDLISG 327
+DLM +TE ++SG
Sbjct: 346 HDLMEITEKMLSG 358
|
|
| UNIPROTKB|Q15046 KARS "Lysine--tRNA ligase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1112 (396.5 bits), Expect = 1.1e-131, Sum P(2) = 1.1e-131
Identities = 206/317 (64%), Positives = 257/317 (81%)
Query: 15 AENSQQHTTAQTVTHLNTNYT---QQCLT-SEFFRLRSAAVEQMKEQGPHPYPHKFTVTS 70
+E TA H N ++ + ++++++RS A+ Q+K G PYPHKF V
Sbjct: 44 SEKQLSQATAAATNHTTDNGVGPEEESVDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDI 103
Query: 71 SLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMY 130
SL DFI+KYS L L ++TL VAGR+HA R SG KL+FYDLRGEG+K+QVMAN+R Y
Sbjct: 104 SLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 163
Query: 131 QSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK 190
+SEEEF K++RGDIIGV G+PGKTKKGELSIIP ++TLLSPCLHMLPH+HFG+KDK
Sbjct: 164 KSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 223
Query: 191 ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPF 250
ETR+RQRYLDL++N+ +R KFI+R++II Y+R +LD LGFLE+ETPMMN+I GGA AKPF
Sbjct: 224 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPF 283
Query: 251 VTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMA 310
+T+HN+L+M+LYMRIAPELY KMLVVGG+DRVYE+GRQFRNEGIDLTHNPEFTTCEFYMA
Sbjct: 284 ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 343
Query: 311 YADYNDLMHLTEDLISG 327
YADY+DLM +TE ++SG
Sbjct: 344 YADYHDLMEITEKMVSG 360
|
|
| RGD|1359653 Kars "lysyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1110 (395.8 bits), Expect = 1.1e-131, Sum P(2) = 1.1e-131
Identities = 207/318 (65%), Positives = 260/318 (81%)
Query: 15 AENSQQHTTAQTVT-HLNTNYT---QQCLT-SEFFRLRSAAVEQMKEQGPHPYPHKFTVT 69
+E TTA T H N ++ L ++++++RS AV+Q+K G PYPHKF V
Sbjct: 72 SEKQLNQTTAAAATNHTADNGVGAEEETLDPNQYYKIRSQAVQQLKVSGEDPYPHKFHVD 131
Query: 70 SSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARM 129
SL FI++YS L L ++TL VAGR+HA R SG KL+FYDLRGEG+K+QVMAN+R
Sbjct: 132 ISLTQFIQEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRN 191
Query: 130 YQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKD 189
Y+SEEEF K++RGDIIGV G+PGKTKKGELSI+P+++TLLSPCLHMLPH+HFG+KD
Sbjct: 192 YKSEEEFVHINNKLRRGDIIGVEGNPGKTKKGELSIVPREMTLLSPCLHMLPHLHFGLKD 251
Query: 190 KETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKP 249
KETR+RQRYLDL++N+ +R KFI+R++II Y+R +LD LGFLE+ETPMMN+I GGA AKP
Sbjct: 252 KETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKP 311
Query: 250 FVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYM 309
F+T+HN+L+M+LYMRIAPELY KMLVVGG+DRVYE+GRQFRNEGIDLTHNPEFTTCEFYM
Sbjct: 312 FITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYM 371
Query: 310 AYADYNDLMHLTEDLISG 327
AYADY+DLM +TE ++SG
Sbjct: 372 AYADYHDLMEITEKMLSG 389
|
|
| UNIPROTKB|D4ABR8 Kars "Lysine--tRNA ligase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1110 (395.8 bits), Expect = 1.1e-131, Sum P(2) = 1.1e-131
Identities = 207/318 (65%), Positives = 260/318 (81%)
Query: 15 AENSQQHTTAQTVT-HLNTNYT---QQCLT-SEFFRLRSAAVEQMKEQGPHPYPHKFTVT 69
+E TTA T H N ++ L ++++++RS AV+Q+K G PYPHKF V
Sbjct: 43 SEKQLNQTTAAAATNHTADNGVGAEEETLDPNQYYKIRSQAVQQLKVSGEDPYPHKFHVD 102
Query: 70 SSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARM 129
SL FI++YS L L ++TL VAGR+HA R SG KL+FYDLRGEG+K+QVMAN+R
Sbjct: 103 ISLTQFIQEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRN 162
Query: 130 YQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKD 189
Y+SEEEF K++RGDIIGV G+PGKTKKGELSI+P+++TLLSPCLHMLPH+HFG+KD
Sbjct: 163 YKSEEEFVHINNKLRRGDIIGVEGNPGKTKKGELSIVPREMTLLSPCLHMLPHLHFGLKD 222
Query: 190 KETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKP 249
KETR+RQRYLDL++N+ +R KFI+R++II Y+R +LD LGFLE+ETPMMN+I GGA AKP
Sbjct: 223 KETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKP 282
Query: 250 FVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYM 309
F+T+HN+L+M+LYMRIAPELY KMLVVGG+DRVYE+GRQFRNEGIDLTHNPEFTTCEFYM
Sbjct: 283 FITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYM 342
Query: 310 AYADYNDLMHLTEDLISG 327
AYADY+DLM +TE ++SG
Sbjct: 343 AYADYHDLMEITEKMLSG 360
|
|
| UNIPROTKB|E2RSP4 KARS "Lysine--tRNA ligase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1102 (393.0 bits), Expect = 6.1e-131, Sum P(2) = 6.1e-131
Identities = 206/317 (64%), Positives = 255/317 (80%)
Query: 15 AENSQQHTTAQTVTHLNTNYT---QQCLT-SEFFRLRSAAVEQMKEQGPHPYPHKFTVTS 70
+E TA H N ++ L +++F++RS A+ Q+K G PYPHKF V
Sbjct: 72 SEKQLSQATAAATNHTTDNDVGAEEESLDPNQYFKIRSQAIHQLKINGEDPYPHKFHVDI 131
Query: 71 SLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMY 130
SL FIE+Y L L ++TL VAGR+HA R SG KL+FYDLRGEG+K+QVMAN+R Y
Sbjct: 132 SLTHFIEEYGHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 191
Query: 131 QSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK 190
+SEEEF K++RGDIIGV G+PGKTKKGELSIIP ++TLLSPCLHMLPH+HFG+KDK
Sbjct: 192 KSEEEFIHINNKLRRGDIIGVKGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 251
Query: 191 ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPF 250
ETR+RQRYLDL++N+ +R KFI+R++II Y+R +LD LGFLE+ETPMMN+I GGA AKPF
Sbjct: 252 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPF 311
Query: 251 VTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMA 310
+T+HN+L+M+LYMRIAPELY K+LVVGG+DRVYE+GRQFRNEGIDLTHNPEFTTCEFYMA
Sbjct: 312 ITYHNELDMNLYMRIAPELYHKILVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 371
Query: 311 YADYNDLMHLTEDLISG 327
YADY+DLM +TE +ISG
Sbjct: 372 YADYHDLMEITEKMISG 388
|
|
| UNIPROTKB|F1MMK8 KARS "Lysine--tRNA ligase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1103 (393.3 bits), Expect = 3.3e-130, Sum P(2) = 3.3e-130
Identities = 201/287 (70%), Positives = 247/287 (86%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVH 100
+++F++RS A+ Q+K G PYPHKF V SL FI++YS L L ++TL VAGR+H
Sbjct: 100 NQYFKIRSQAIHQLKVNGEDPYPHKFHVDISLTHFIQEYSHLQPGDHLTDITLKVAGRIH 159
Query: 101 AIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK 160
A R SG KL+FYDLRGEG+K+QVMAN+R Y+SEEEF K++RGDIIGV G+PGKTKK
Sbjct: 160 AKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIRINNKLRRGDIIGVQGNPGKTKK 219
Query: 161 GELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAY 220
GELSIIP ++TLLSPCLHMLPH+HFG+KDKETR+RQRYLDL++N+ +R KFI+R++II Y
Sbjct: 220 GELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITY 279
Query: 221 VRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLD 280
+R +LD LGFLE+ETPMMN+I GGA AKPF+T+HN+L+M+LYMRIAPELY KMLVVGG+D
Sbjct: 280 IRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGID 339
Query: 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
RVYE+GRQFRNEGIDLTHNPEFTTCEFYMAYADY+DLM +TE +ISG
Sbjct: 340 RVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMISG 386
|
|
| UNIPROTKB|E1C3E0 KARS "Lysine--tRNA ligase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1106 (394.4 bits), Expect = 1.4e-129, Sum P(2) = 1.4e-129
Identities = 208/316 (65%), Positives = 258/316 (81%)
Query: 15 AENSQQHTTAQTVTHLNTNY--TQQCLT-SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSS 71
AE +H Q+ H N ++ L ++++++RS A++Q+K PYPHKF V S
Sbjct: 34 AEKEAKHKE-QSEKHPKDNIGADEESLDPNQYYKIRSHAIQQLKGTNEDPYPHKFHVDLS 92
Query: 72 LEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQ 131
L DFIE+YS L L ++T+SVAGR+HA R SG KL+FYDLRGEG+K+QVMAN+R+Y+
Sbjct: 93 LSDFIERYSHLQPGDHLTDITVSVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRLYK 152
Query: 132 SEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKE 191
SEEE+ K++RGDIIGV G+PGKTKKGELSIIP ++TLLSPCLHMLPH+HFG+KDKE
Sbjct: 153 SEEEYFRINNKLRRGDIIGVVGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKE 212
Query: 192 TRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFV 251
TR+RQRYLDL++N+ +R KFI RA+I+ Y+R +LD LGFLE+ETPMMN+I GGA AKPF+
Sbjct: 213 TRYRQRYLDLILNDYVRQKFITRAKIVTYIRSFLDELGFLEIETPMMNIIPGGAMAKPFI 272
Query: 252 THHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAY 311
T+HN+L+M LYMRIAPELY KMLVVGGLDRVYE+GRQFRNEGIDLTHNPEFTTCEFYMAY
Sbjct: 273 TYHNELDMKLYMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAY 332
Query: 312 ADYNDLMHLTEDLISG 327
ADY DLM +TE L+SG
Sbjct: 333 ADYCDLMEITEKLLSG 348
|
|
| UNIPROTKB|F1NE72 KARS "Lysine--tRNA ligase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1106 (394.4 bits), Expect = 1.4e-129, Sum P(2) = 1.4e-129
Identities = 207/316 (65%), Positives = 259/316 (81%)
Query: 16 ENSQQHT---TAQTVTHLNTNYTQQCLT-SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSS 71
E S++H + T + N ++ L ++++++RS A++Q+K PYPHKF V S
Sbjct: 42 EQSEKHPNKPSLATDSEDNIGADEESLDPNQYYKIRSHAIQQLKGTNEDPYPHKFHVDLS 101
Query: 72 LEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQ 131
L DFIE+YS L L ++T+SVAGR+HA R SG KL+FYDLRGEG+K+QVMAN+R+Y+
Sbjct: 102 LSDFIERYSHLQPGDHLTDITVSVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRLYK 161
Query: 132 SEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKE 191
SEEE+ K++RGDIIGV G+PGKTKKGELSIIP ++TLLSPCLHMLPH+HFG+KDKE
Sbjct: 162 SEEEYFRINNKLRRGDIIGVVGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKE 221
Query: 192 TRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFV 251
TR+RQRYLDL++N+ +R KFI RA+I+ Y+R +LD LGFLE+ETPMMN+I GGA AKPF+
Sbjct: 222 TRYRQRYLDLILNDYVRQKFITRAKIVTYIRSFLDELGFLEIETPMMNIIPGGAMAKPFI 281
Query: 252 THHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAY 311
T+HN+L+M LYMRIAPELY KMLVVGGLDRVYE+GRQFRNEGIDLTHNPEFTTCEFYMAY
Sbjct: 282 TYHNELDMKLYMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAY 341
Query: 312 ADYNDLMHLTEDLISG 327
ADY DLM +TE L+SG
Sbjct: 342 ADYCDLMEITEKLLSG 357
|
|
| ZFIN|ZDB-GENE-021115-8 kars "lysyl-tRNA synthetase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1091 (389.1 bits), Expect = 1.4e-129, Sum P(2) = 1.4e-129
Identities = 199/287 (69%), Positives = 244/287 (85%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVH 100
+++F++RS A++ +K PYPHKF V SL +FIE+Y+ L L +V L+++GRVH
Sbjct: 87 NQYFKIRSQAIQALKGTAEDPYPHKFHVDLSLTEFIERYNHLQPGDHLTDVVLNLSGRVH 146
Query: 101 AIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK 160
A R SG KL+FYDLRGEG+K+QVMAN+R Y SEE F K++RGDIIGV G+PGKTKK
Sbjct: 147 AKRASGAKLLFYDLRGEGVKLQVMANSRNYTSEEAFVHINNKLRRGDIIGVRGNPGKTKK 206
Query: 161 GELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAY 220
GELSIIP ++TLLSPCLHMLPH+HFG+KDKETRFRQRYLDL++N+ +R KF+ R++II Y
Sbjct: 207 GELSIIPVEMTLLSPCLHMLPHLHFGLKDKETRFRQRYLDLILNDFVRQKFVTRSKIITY 266
Query: 221 VRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLD 280
+R +LD LGFLE+ETPMMN+I GGA AKPF+T+HNDLNM+LYMRIAPELY KMLVVGG+D
Sbjct: 267 LRSFLDQLGFLEIETPMMNLIPGGAVAKPFITYHNDLNMNLYMRIAPELYHKMLVVGGID 326
Query: 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
RVYE+GRQFRNEGIDLTHNPEFTTCEFYMAYADY+DLM +TE L+SG
Sbjct: 327 RVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKLLSG 373
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q22099 | SYK_CAEEL | 6, ., 1, ., 1, ., 6 | 0.6398 | 0.5153 | 0.4982 | yes | N/A |
| Q15046 | SYK_HUMAN | 6, ., 1, ., 1, ., 6 | 0.7003 | 0.4122 | 0.3819 | yes | N/A |
| Q8SS56 | SYKC_ENCCU | 6, ., 1, ., 1, ., 6 | 0.5769 | 0.4050 | 0.5090 | yes | N/A |
| Q9ZPI1 | SYK_ARATH | 6, ., 1, ., 1, ., 6 | 0.5223 | 0.5641 | 0.4984 | yes | N/A |
| Q6F2U9 | SYK_ORYSJ | 6, ., 1, ., 1, ., 6 | 0.5649 | 0.5189 | 0.4767 | yes | N/A |
| Q9UUE6 | SYKC_SCHPO | 6, ., 1, ., 1, ., 6 | 0.5791 | 0.5244 | 0.4906 | yes | N/A |
| P15180 | SYKC_YEAST | 6, ., 1, ., 1, ., 6 | 0.5753 | 0.5171 | 0.4839 | yes | N/A |
| Q99MN1 | SYK_MOUSE | 6, ., 1, ., 1, ., 6 | 0.7038 | 0.4122 | 0.3831 | yes | N/A |
| P37879 | SYK_CRIGR | 6, ., 1, ., 1, ., 6 | 0.7003 | 0.5171 | 0.4790 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.6 | 0.914 |
| 3rd Layer | 6.1.1 | 0.921 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 553 | |||
| PLN02502 | 553 | PLN02502, PLN02502, lysyl-tRNA synthetase | 1e-166 | |
| PRK00484 | 491 | PRK00484, lysS, lysyl-tRNA synthetase; Reviewed | 1e-135 | |
| COG1190 | 502 | COG1190, LysU, Lysyl-tRNA synthetase (class II) [T | 1e-135 | |
| TIGR00499 | 496 | TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukar | 1e-122 | |
| PTZ00417 | 585 | PTZ00417, PTZ00417, lysine-tRNA ligase; Provisiona | 1e-120 | |
| PRK02983 | 1094 | PRK02983, lysS, lysyl-tRNA synthetase; Provisional | 3e-88 | |
| cd00775 | 329 | cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) c | 1e-86 | |
| PLN02502 | 553 | PLN02502, PLN02502, lysyl-tRNA synthetase | 1e-77 | |
| PRK12445 | 505 | PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewe | 2e-75 | |
| PRK00484 | 491 | PRK00484, lysS, lysyl-tRNA synthetase; Reviewed | 1e-73 | |
| COG1190 | 502 | COG1190, LysU, Lysyl-tRNA synthetase (class II) [T | 2e-73 | |
| PTZ00385 | 659 | PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisi | 4e-64 | |
| TIGR00499 | 496 | TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukar | 4e-61 | |
| PTZ00417 | 585 | PTZ00417, PTZ00417, lysine-tRNA ligase; Provisiona | 7e-58 | |
| pfam00152 | 345 | pfam00152, tRNA-synt_2, tRNA synthetases class II | 5e-55 | |
| cd00775 | 329 | cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) c | 4e-51 | |
| cd04322 | 108 | cd04322, LysRS_N, LysRS_N: N-terminal, anticodon r | 9e-48 | |
| cd00669 | 269 | cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA syn | 1e-44 | |
| PRK02983 | 1094 | PRK02983, lysS, lysyl-tRNA synthetase; Provisional | 2e-44 | |
| PRK12445 | 505 | PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewe | 4e-41 | |
| cd04322 | 108 | cd04322, LysRS_N, LysRS_N: N-terminal, anticodon r | 7e-32 | |
| PTZ00385 | 659 | PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisi | 1e-26 | |
| COG0017 | 435 | COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetas | 2e-26 | |
| PRK05159 | 437 | PRK05159, aspC, aspartyl-tRNA synthetase; Provisio | 1e-24 | |
| pfam00152 | 345 | pfam00152, tRNA-synt_2, tRNA synthetases class II | 1e-23 | |
| COG0173 | 585 | COG0173, AspS, Aspartyl-tRNA synthetase [Translati | 2e-23 | |
| TIGR00458 | 428 | TIGR00458, aspS_nondisc, nondiscriminating asparty | 2e-22 | |
| PRK00476 | 588 | PRK00476, aspS, aspartyl-tRNA synthetase; Validate | 3e-21 | |
| TIGR00459 | 583 | TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba | 4e-21 | |
| PLN02903 | 652 | PLN02903, PLN02903, aminoacyl-tRNA ligase | 3e-19 | |
| COG2269 | 322 | COG2269, COG2269, Truncated, possibly inactive, ly | 5e-19 | |
| cd00669 | 269 | cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA syn | 3e-18 | |
| TIGR00462 | 290 | TIGR00462, genX, EF-P lysine aminoacylase GenX | 3e-17 | |
| cd04100 | 85 | cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-ter | 4e-17 | |
| PRK12820 | 706 | PRK12820, PRK12820, bifunctional aspartyl-tRNA syn | 6e-16 | |
| PRK09350 | 306 | PRK09350, PRK09350, poxB regulator PoxA; Provision | 9e-16 | |
| cd00777 | 280 | cd00777, AspRS_core, Asp tRNA synthetase (aspRS) c | 6e-14 | |
| cd00768 | 211 | cd00768, class_II_aaRS-like_core, Class II tRNA am | 1e-13 | |
| cd00776 | 322 | cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/As | 1e-13 | |
| PRK00476 | 588 | PRK00476, aspS, aspartyl-tRNA synthetase; Validate | 4e-13 | |
| PLN02850 | 530 | PLN02850, PLN02850, aspartate-tRNA ligase | 9e-13 | |
| pfam01336 | 75 | pfam01336, tRNA_anti, OB-fold nucleic acid binding | 4e-12 | |
| TIGR00457 | 453 | TIGR00457, asnS, asparaginyl-tRNA synthetase | 7e-11 | |
| COG0173 | 585 | COG0173, AspS, Aspartyl-tRNA synthetase [Translati | 1e-10 | |
| PTZ00401 | 550 | PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Prov | 3e-09 | |
| PRK06462 | 335 | PRK06462, PRK06462, asparagine synthetase A; Revie | 5e-09 | |
| PRK05159 | 437 | PRK05159, aspC, aspartyl-tRNA synthetase; Provisio | 2e-08 | |
| COG0017 | 435 | COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetas | 1e-07 | |
| cd04317 | 135 | cd04317, EcAspRS_like_N, EcAspRS_like_N: N-termina | 2e-07 | |
| TIGR00459 | 583 | TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba | 1e-06 | |
| PLN02903 | 652 | PLN02903, PLN02903, aminoacyl-tRNA ligase | 3e-06 | |
| TIGR00458 | 428 | TIGR00458, aspS_nondisc, nondiscriminating asparty | 3e-05 | |
| PTZ00385 | 659 | PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisi | 5e-05 | |
| cd04100 | 85 | cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-ter | 6e-05 | |
| PRK12820 | 706 | PRK12820, PRK12820, bifunctional aspartyl-tRNA syn | 2e-04 | |
| cd00777 | 280 | cd00777, AspRS_core, Asp tRNA synthetase (aspRS) c | 2e-04 | |
| COG2269 | 322 | COG2269, COG2269, Truncated, possibly inactive, ly | 4e-04 | |
| PRK03932 | 450 | PRK03932, asnC, asparaginyl-tRNA synthetase; Valid | 4e-04 | |
| cd00768 | 211 | cd00768, class_II_aaRS-like_core, Class II tRNA am | 5e-04 | |
| cd04316 | 108 | cd04316, ND_PkAspRS_like_N, ND_PkAspRS_like_N: N-t | 8e-04 | |
| pfam01336 | 75 | pfam01336, tRNA_anti, OB-fold nucleic acid binding | 0.002 | |
| TIGR00468 | 293 | TIGR00468, pheS, phenylalanyl-tRNA synthetase, alp | 0.003 |
| >gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 481 bits (1241), Expect = e-166
Identities = 172/288 (59%), Positives = 216/288 (75%), Gaps = 2/288 (0%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVH 100
+++ R VE ++ +G PYP+KF VT + + EKY L + + LE+V++SVAGR+
Sbjct: 59 TQYRANRLKKVEALRAKGVEPYPYKFDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIM 118
Query: 101 AIRESGTKLMFYDLRGEGLKIQVMANARMY-QSEEEFASDLVKIKRGDIIGVTGSPGKTK 159
A R G KL FYDLR +G KIQ+ A+ + EEEF + RGDI+GVTG+PGKTK
Sbjct: 119 AKRAFG-KLAFYDLRDDGGKIQLYADKKRLDLDEEEFEKLHSLVDRGDIVGVTGTPGKTK 177
Query: 160 KGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIA 219
KGELSI P +L+ CL MLP + G+ D+ETR+RQRYLDL+ N +R F RA+II+
Sbjct: 178 KGELSIFPTSFEVLTKCLLMLPDKYHGLTDQETRYRQRYLDLIANPEVRDIFRTRAKIIS 237
Query: 220 YVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL 279
Y+RR+LD GFLEVETPM+NMIAGGA A+PFVTHHNDLNMDLY+RIA EL+LK LVVGG
Sbjct: 238 YIRRFLDDRGFLEVETPMLNMIAGGAAARPFVTHHNDLNMDLYLRIATELHLKRLVVGGF 297
Query: 280 DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
+RVYE+GRQFRNEGI HNPEFTTCEFY AYADYND+M LTE+++SG
Sbjct: 298 ERVYEIGRQFRNEGISTRHNPEFTTCEFYQAYADYNDMMELTEEMVSG 345
|
Length = 553 |
| >gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 402 bits (1036), Expect = e-135
Identities = 146/287 (50%), Positives = 190/287 (66%), Gaps = 4/287 (1%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLE-NVTLSVAGRV 99
+E +R + +++EQG PYP+KF T + + KY D ++ E + +SVAGRV
Sbjct: 4 NEQIAVRREKLAELREQGIDPYPNKFERTHTAAELRAKYDDKEKEELEELEIEVSVAGRV 63
Query: 100 HAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK 159
R G K F L+ +IQ+ + EE K+ GDIIGV G+ KTK
Sbjct: 64 MLKRVMG-KASFATLQDGSGRIQLYVSKD--DVGEEALEAFKKLDLGDIIGVEGTLFKTK 120
Query: 160 KGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIA 219
GELS+ +LTLL+ L LP G+ D ETR+RQRY+DL++N R F R++II+
Sbjct: 121 TGELSVKATELTLLTKSLRPLPDKFHGLTDVETRYRQRYVDLIVNPESRETFRKRSKIIS 180
Query: 220 YVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL 279
+RR+LD+ GFLEVETPM+ IAGGA A+PF+THHN L++DLY+RIAPELYLK L+VGG
Sbjct: 181 AIRRFLDNRGFLEVETPMLQPIAGGAAARPFITHHNALDIDLYLRIAPELYLKRLIVGGF 240
Query: 280 DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
+RVYE+GR FRNEGID HNPEFT EFY AYADYND+M LTE+LI
Sbjct: 241 ERVYEIGRNFRNEGIDTRHNPEFTMLEFYQAYADYNDMMDLTEELIR 287
|
Length = 491 |
| >gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 401 bits (1032), Expect = e-135
Identities = 151/287 (52%), Positives = 191/287 (66%), Gaps = 3/287 (1%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLE-NVTLSVAGRV 99
++ +R + ++EQG PYP+ F T + D EKY+D ++ N+ +SVAGR+
Sbjct: 11 NDQIAVRREKLAALREQGIDPYPNDFERTHTSADLREKYADKTKEELEALNIEVSVAGRI 70
Query: 100 HAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK 159
IR G K F DL+ KIQ+ N + EE F + K+ GDIIGV G KTK
Sbjct: 71 MTIRNMG-KASFADLQDGSGKIQLYVN-KDEVGEEVFEALFKKLDLGDIIGVEGPLFKTK 128
Query: 160 KGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIA 219
GELS+ ++L LLS L LP G+ DKE R+RQRYLDL++N R FI R++II
Sbjct: 129 TGELSVSVEELRLLSKSLRPLPEKFHGLTDKEIRYRQRYLDLIVNPESRQTFIKRSKIIR 188
Query: 220 YVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL 279
+R +LD GFLEVETPM+ I GGA A+PF+THHN L+MDLY+RIAPELYLK L+VGG
Sbjct: 189 AIREFLDDRGFLEVETPMLQPIPGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGF 248
Query: 280 DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
+RV+E+GR FRNEGID THNPEFT EFY AYADY DLM LTE+LI
Sbjct: 249 ERVFEIGRNFRNEGIDTTHNPEFTMLEFYQAYADYEDLMDLTEELIK 295
|
Length = 502 |
| >gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Score = 369 bits (949), Expect = e-122
Identities = 144/288 (50%), Positives = 197/288 (68%), Gaps = 5/288 (1%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLE-NVTLSVAGRV 99
++ + R + ++++ G PY +KF T S ++F E+Y+DL + ++ + N+ +S+AGR+
Sbjct: 3 NDQLQTRREKLARLRQTGNDPYLNKFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRI 62
Query: 100 HAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKI-KRGDIIGVTGSPGKT 158
A R S K F L+ E +IQ+ N E+F + GDIIGVTG P KT
Sbjct: 63 MARR-SMGKATFITLQDESGQIQLYVNKDDLP--EDFYEFDEYLLDLGDIIGVTGYPFKT 119
Query: 159 KKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQII 218
K GELS+ +L +L+ L LP G+ D+ETR+RQRYLDL++N R F+VR++II
Sbjct: 120 KTGELSVHVTELQILTKALRPLPDKFHGLTDQETRYRQRYLDLIVNPDSRQTFLVRSKII 179
Query: 219 AYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG 278
+RR+LD GF+EVETPM+ +I GGA A+PF+THHN L+MDLY+RIAPELYLK L+VGG
Sbjct: 180 KAIRRFLDDRGFIEVETPMLQVIPGGANARPFITHHNALDMDLYLRIAPELYLKRLIVGG 239
Query: 279 LDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
++VYE+GR FRNEG+D THNPEFT EFY AYADY DLM LTE+L
Sbjct: 240 FEKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAYADYEDLMDLTENLFK 287
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms [Protein synthesis, tRNA aminoacylation]. Length = 496 |
| >gnl|CDD|173607 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Score = 367 bits (942), Expect = e-120
Identities = 164/285 (57%), Positives = 215/285 (75%), Gaps = 2/285 (0%)
Query: 43 FFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAI 102
++ RS +++ K +G +PYPHKF T ++ +F+EKY DL + LE+ L+V GR+ +
Sbjct: 85 YYENRSKFIQEQKAKGINPYPHKFERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRV 144
Query: 103 RESGTKLMFYDLRGEGLKIQVMANARMYQSEE-EFASDLVKIKRGDIIGVTGSPGKTKKG 161
SG KL F+DL G+G KIQV+AN + + FA KI+RGDI+G+ G PGK+KKG
Sbjct: 145 SASGQKLRFFDLVGDGAKIQVLANFAFHDHTKSNFAECYDKIRRGDIVGIVGFPGKSKKG 204
Query: 162 ELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYV 221
ELSI PK+ +LSPCLHMLP M +G+KD E R+RQRYLDLMINE R FI R +II Y+
Sbjct: 205 ELSIFPKETIILSPCLHMLP-MKYGLKDTEIRYRQRYLDLMINESTRSTFITRTKIINYL 263
Query: 222 RRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDR 281
R +L+ GF+EVETP MN++AGGA A+PF+THHNDL++DLY+RIA EL LKML+VGG+D+
Sbjct: 264 RNFLNDRGFIEVETPTMNLVAGGANARPFITHHNDLDLDLYLRIATELPLKMLIVGGIDK 323
Query: 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
VYE+G+ FRNEGID THNPEFT+CEFY AYAD+ DL+ +ED S
Sbjct: 324 VYEIGKVFRNEGIDNTHNPEFTSCEFYWAYADFYDLIKWSEDFFS 368
|
Length = 585 |
| >gnl|CDD|235095 PRK02983, lysS, lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 294 bits (754), Expect = 3e-88
Identities = 122/287 (42%), Positives = 172/287 (59%), Gaps = 15/287 (5%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVH 100
E R+R A +E ++ G PYP T ++ + + D P + +SV+GRV
Sbjct: 611 PEQVRVRLAKLEALRAAGVDPYPVGVPPTHTVAEAL----DAPTGE-----EVSVSGRVL 661
Query: 101 AIRESGTKLMFYDLRGEGLKIQVMANARMYQSE--EEFASDLVKIKRGDIIGVTGSPGKT 158
IR+ G ++F DLR ++QV+ +A + +F + + GD++ VTG+ G +
Sbjct: 662 RIRDYG-GVLFADLRDWSGELQVLLDASRLEQGSLADFRAA---VDLGDLVEVTGTMGTS 717
Query: 159 KKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQII 218
+ G LS++ L CL LP G+ D E R RQRYLDL +N R R+ ++
Sbjct: 718 RNGTLSLLVTSWRLAGKCLRPLPDKWKGLTDPEARVRQRYLDLAVNPEARDLLRARSAVV 777
Query: 219 AYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG 278
VR L + GFLEVETP++ + GGA A+PFVTH N +MDLY+RIAPELYLK L VGG
Sbjct: 778 RAVRETLVARGFLEVETPILQQVHGGANARPFVTHINAYDMDLYLRIAPELYLKRLCVGG 837
Query: 279 LDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLI 325
++RV+E+GR FRNEG+D THNPEFT E Y A+ADY+ + LT +LI
Sbjct: 838 VERVFELGRNFRNEGVDATHNPEFTLLEAYQAHADYDTMRDLTRELI 884
|
Length = 1094 |
| >gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Score = 270 bits (694), Expect = 1e-86
Identities = 91/124 (73%), Positives = 107/124 (86%)
Query: 204 NERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYM 263
NE +R FIVR++II+Y+R++LD GFLEVETPM+ IAGGA A+PF+THHN L+MDLY+
Sbjct: 1 NEEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITHHNALDMDLYL 60
Query: 264 RIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTED 323
RIAPELYLK L+VGG +RVYE+GR FRNEGIDLTHNPEFT EFY AYADYND+M LTED
Sbjct: 61 RIAPELYLKRLIVGGFERVYEIGRNFRNEGIDLTHNPEFTMIEFYEAYADYNDMMDLTED 120
Query: 324 LISG 327
L SG
Sbjct: 121 LFSG 124
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 329 |
| >gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 254 bits (651), Expect = 1e-77
Identities = 93/151 (61%), Positives = 115/151 (76%), Gaps = 1/151 (0%)
Query: 337 VMANARMY-QSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLP 395
+ A+ + EEEF + RGDI+GVTG+PGKTKKGELSI P +L+ CL MLP
Sbjct: 140 LYADKKRLDLDEEEFEKLHSLVDRGDIVGVTGTPGKTKKGELSIFPTSFEVLTKCLLMLP 199
Query: 396 HMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI 455
+ G+ D+ETR+RQRYLDL+ N +R F RA+II+Y+RR+LD GFLEVETPM+NMI
Sbjct: 200 DKYHGLTDQETRYRQRYLDLIANPEVRDIFRTRAKIISYIRRFLDDRGFLEVETPMLNMI 259
Query: 456 AGGATAKPFVTHHNDLNMDLYMRIAPELYLK 486
AGGA A+PFVTHHNDLNMDLY+RIA EL+LK
Sbjct: 260 AGGAAARPFVTHHNDLNMDLYLRIATELHLK 290
|
Length = 553 |
| >gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 247 bits (632), Expect = 2e-75
Identities = 135/283 (47%), Positives = 187/283 (66%), Gaps = 6/283 (2%)
Query: 44 FRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLE--NVTLSVAGRVHA 101
R R + +++QG +P+ F + + E++ D D Q LE N+ +SVAGR+
Sbjct: 19 LRNRREKLAALRQQGV-AFPNDFRRDHTSDQLHEEF-DAKDNQELESLNIEVSVAGRMMT 76
Query: 102 IRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKG 161
R G K F L+ G +IQ+ AR E + K GDIIG G+ KT+ G
Sbjct: 77 RRIMG-KASFVTLQDVGGRIQLYV-ARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTG 134
Query: 162 ELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYV 221
ELSI +L LL+ L LP G++D+E R+RQRYLDL+ N++ R F+VR++I+A +
Sbjct: 135 ELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAI 194
Query: 222 RRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDR 281
R+++ + GF+EVETPMM +I GGA+A+PF+THHN L++D+Y+RIAPELYLK LVVGG +R
Sbjct: 195 RQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFER 254
Query: 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDL 324
V+E+ R FRNEGI + HNPEFT E YMAYADY+DL+ LTE L
Sbjct: 255 VFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESL 297
|
Length = 505 |
| >gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 242 bits (620), Expect = 1e-73
Identities = 101/258 (39%), Positives = 129/258 (50%), Gaps = 69/258 (26%)
Query: 348 EEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETR 407
EE K+ GDIIGV G+ KTK GELS+ +LTLL+ L LP G+ D ETR
Sbjct: 95 EEALEAFKKLDLGDIIGVEGTLFKTKTGELSVKATELTLLTKSLRPLPDKFHGLTDVETR 154
Query: 408 FRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTH 467
+RQRY+DL++N R F R++II+ +RR+LD+ GFLEVETPM+ IAGGA A+PF+TH
Sbjct: 155 YRQRYVDLIVNPESRETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIAGGAAARPFITH 214
Query: 468 HNDLNMDLYMRIAPELYLK-----------------------STH--------------- 489
HN L++DLY+RIAPELYLK + H
Sbjct: 215 HNALDIDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEGIDTRHNPEFTMLEFYQAYAD 274
Query: 490 --------------------GSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALG 529
G+ KVTY G EIDF PPF+RL M A++ G
Sbjct: 275 YNDMMDLTEELIRHLAQAVLGTTKVTY--QG------TEIDFGPPFKRLTMVDAIKEYTG 326
Query: 530 VKLPNPTEFDTPEANKFL 547
V + EA
Sbjct: 327 VDF---DDMTDEEARALA 341
|
Length = 491 |
| >gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 241 bits (618), Expect = 2e-73
Identities = 105/259 (40%), Positives = 130/259 (50%), Gaps = 68/259 (26%)
Query: 347 EEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKET 406
EE F + K+ GDIIGV G KTK GELS+ ++L LLS L LP G+ DKE
Sbjct: 102 EEVFEALFKKLDLGDIIGVEGPLFKTKTGELSVSVEELRLLSKSLRPLPEKFHGLTDKEI 161
Query: 407 RFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVT 466
R+RQRYLDL++N R FI R++II +R +LD GFLEVETPM+ I GGA A+PF+T
Sbjct: 162 RYRQRYLDLIVNPESRQTFIKRSKIIRAIREFLDDRGFLEVETPMLQPIPGGAAARPFIT 221
Query: 467 HHNDLNMDLYMRIAPELYLK-----------------------STH-------------- 489
HHN L+MDLY+RIAPELYLK +TH
Sbjct: 222 HHNALDMDLYLRIAPELYLKRLIVGGFERVFEIGRNFRNEGIDTTHNPEFTMLEFYQAYA 281
Query: 490 ---------------------GSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAAL 528
G+ KVTY EIDF+ PF+R+ M AL+ L
Sbjct: 282 DYEDLMDLTEELIKELAKEVNGTTKVTYGGQ--------EIDFSKPFKRITMVDALKEYL 333
Query: 529 GVKLPNPTEFDTPEANKFL 547
GV FD EA +
Sbjct: 334 GVDF--DDLFDDEEAKELA 350
|
Length = 502 |
| >gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 221 bits (563), Expect = 4e-64
Identities = 105/265 (39%), Positives = 164/265 (61%), Gaps = 7/265 (2%)
Query: 66 FTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMA 125
F + + + E+Y L T+ VAGRV ++R+ G K++F +R G ++QV+
Sbjct: 83 FRGITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIG-KIIFVTIRSNGNELQVVG 141
Query: 126 NARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSP--CLHML--P 181
+ + E+ V ++ GDIIG G P + ++GELS+ ++ +LSP C + P
Sbjct: 142 QVGEHFTREDLKKLKVSLRVGDIIGADGVPCRMQRGELSVAASRMLILSPYVCTDQVVCP 201
Query: 182 HMH-FGV-KDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMN 239
++ F V +D + ++R R+ D+M N + R ++ +R Y + F+EVETP+++
Sbjct: 202 NLRGFTVLQDNDVKYRYRFTDMMTNPCVIETIKKRHVMLQALRDYFNERNFVEVETPVLH 261
Query: 240 MIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHN 299
+A GA AK FVTHHN MDL++R+APEL+LK +VGG++R+YE+G+ FRNE D +HN
Sbjct: 262 TVASGANAKSFVTHHNANAMDLFLRVAPELHLKQCIVGGMERIYEIGKVFRNEDADRSHN 321
Query: 300 PEFTTCEFYMAYADYNDLMHLTEDL 324
PEFT+CEFY AY Y DLM +TED+
Sbjct: 322 PEFTSCEFYAAYHTYEDLMPMTEDI 346
|
Length = 659 |
| >gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Score = 209 bits (533), Expect = 4e-61
Identities = 79/140 (56%), Positives = 102/140 (72%), Gaps = 1/140 (0%)
Query: 348 EEFASDLVKI-KRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKET 406
E+F + GDIIGVTG P KTK GELS+ +L +L+ L LP G+ D+ET
Sbjct: 94 EDFYEFDEYLLDLGDIIGVTGYPFKTKTGELSVHVTELQILTKALRPLPDKFHGLTDQET 153
Query: 407 RFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVT 466
R+RQRYLDL++N R F+VR++II +RR+LD GF+EVETPM+ +I GGA A+PF+T
Sbjct: 154 RYRQRYLDLIVNPDSRQTFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIPGGANARPFIT 213
Query: 467 HHNDLNMDLYMRIAPELYLK 486
HHN L+MDLY+RIAPELYLK
Sbjct: 214 HHNALDMDLYLRIAPELYLK 233
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms [Protein synthesis, tRNA aminoacylation]. Length = 496 |
| >gnl|CDD|173607 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Score = 202 bits (516), Expect = 7e-58
Identities = 92/151 (60%), Positives = 116/151 (76%), Gaps = 2/151 (1%)
Query: 337 VMANARMYQSEE-EFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLP 395
V+AN + + FA KI+RGDI+G+ G PGK+KKGELSI PK+ +LSPCLHMLP
Sbjct: 165 VLANFAFHDHTKSNFAECYDKIRRGDIVGIVGFPGKSKKGELSIFPKETIILSPCLHMLP 224
Query: 396 HMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI 455
M +G+KD E R+RQRYLDLMINE R FI R +II Y+R +L+ GF+EVETP MN++
Sbjct: 225 -MKYGLKDTEIRYRQRYLDLMINESTRSTFITRTKIINYLRNFLNDRGFIEVETPTMNLV 283
Query: 456 AGGATAKPFVTHHNDLNMDLYMRIAPELYLK 486
AGGA A+PF+THHNDL++DLY+RIA EL LK
Sbjct: 284 AGGANARPFITHHNDLDLDLYLRIATELPLK 314
|
Length = 585 |
| >gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) | Back alignment and domain information |
|---|
Score = 188 bits (481), Expect = 5e-55
Identities = 53/139 (38%), Positives = 83/139 (59%), Gaps = 2/139 (1%)
Query: 189 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAK 248
+ETR + RYLDL +++ +R++II +R +LD GFLEVETP++ A+
Sbjct: 1 SEETRLKYRYLDL-RRPKMQANLKLRSKIIKAIREFLDERGFLEVETPILTKSTPEGGAR 59
Query: 249 PFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGI-DLTHNPEFTTCEF 307
F+ + Y+ +P+LY ++L+V G DRV+++ FR+E + H PEFT +
Sbjct: 60 DFLVPSKFYAKEAYLPQSPQLYKQLLMVAGFDRVFQIAPCFRDEDLRTDRHPPEFTQLDL 119
Query: 308 YMAYADYNDLMHLTEDLIS 326
M++ DY D+M LTEDLI
Sbjct: 120 EMSFVDYEDVMDLTEDLIK 138
|
Length = 345 |
| >gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Score = 177 bits (452), Expect = 4e-51
Identities = 70/194 (36%), Positives = 89/194 (45%), Gaps = 66/194 (34%)
Query: 418 NERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYM 477
NE +R FIVR++II+Y+R++LD GFLEVETPM+ IAGGA A+PF+THHN L+MDLY+
Sbjct: 1 NEEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITHHNALDMDLYL 60
Query: 478 RIAPELYLK-----------------------STH------------------------- 489
RIAPELYLK TH
Sbjct: 61 RIAPELYLKRLIVGGFERVYEIGRNFRNEGIDLTHNPEFTMIEFYEAYADYNDMMDLTED 120
Query: 490 ----------GSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFD 539
G K+ Y E+DFTPPF+R+ M AL+ G+ P
Sbjct: 121 LFSGLVKKINGKTKIEY--------GGKELDFTPPFKRVTMVDALKEKTGIDFPELDLEQ 172
Query: 540 TPEANKFLSDPNGE 553
E K L+ E
Sbjct: 173 PEELAKLLAKLIKE 186
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 329 |
| >gnl|CDD|239817 cd04322, LysRS_N, LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 9e-48
Identities = 60/110 (54%), Positives = 69/110 (62%), Gaps = 2/110 (1%)
Query: 92 TLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGV 151
+SVAGR+ + R SG KL F DL+ E KIQV N EEEF + GDIIGV
Sbjct: 1 EVSVAGRIMSKRGSG-KLSFADLQDESGKIQVYVNKDDL-GEEEFEDFKKLLDLGDIIGV 58
Query: 152 TGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDL 201
TG+P KTK GELSI K+ TLLS L LP G+ D ETR+RQRYLDL
Sbjct: 59 TGTPFKTKTGELSIFVKEFTLLSKSLRPLPEKFHGLTDVETRYRQRYLDL 108
|
These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Saccharomyces cerevisiae cytoplasmic and mitochondrial LysRSs have been shown to participate in the mitochondrial import of the only nuclear-encoded tRNA of S. cerevisiae (tRNAlysCUU). The gene for human LysRS encodes both the cytoplasmic and the mitochondrial isoforms of LysRS. In addition to their housekeeping role, human lysRS may function as a signaling molecule that activates immune cells and tomato LysRS may participate in a root-specific process possibly connected to conditions of oxidative-stress conditions or heavy metal uptake. It is known that human tRNAlys and LysRS are specifically packaged into HIV-1 suggesting a role for LysRS in tRNA packaging. Length = 108 |
| >gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 1e-44
Identities = 61/116 (52%), Positives = 84/116 (72%)
Query: 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELY 270
F VR++II +R ++D GFLEVETPM+ I GGA A+PF+ +N L +D Y+RI+P+L+
Sbjct: 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLF 60
Query: 271 LKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
K L+VGGLDRV+E+ R FRNE + H PEFT + MA+ADY D++ LTE L+
Sbjct: 61 KKRLMVGGLDRVFEINRNFRNEDLRARHQPEFTMMDLEMAFADYEDVIELTERLVR 116
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. Length = 269 |
| >gnl|CDD|235095 PRK02983, lysS, lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 2e-44
Identities = 62/130 (47%), Positives = 82/130 (63%)
Query: 357 IKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLM 416
+ GD++ VTG+ G ++ G LS++ L CL LP G+ D E R RQRYLDL
Sbjct: 702 VDLGDLVEVTGTMGTSRNGTLSLLVTSWRLAGKCLRPLPDKWKGLTDPEARVRQRYLDLA 761
Query: 417 INERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLY 476
+N R R+ ++ VR L + GFLEVETP++ + GGA A+PFVTH N +MDLY
Sbjct: 762 VNPEARDLLRARSAVVRAVRETLVARGFLEVETPILQQVHGGANARPFVTHINAYDMDLY 821
Query: 477 MRIAPELYLK 486
+RIAPELYLK
Sbjct: 822 LRIAPELYLK 831
|
Length = 1094 |
| >gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 4e-41
Identities = 74/165 (44%), Positives = 112/165 (67%), Gaps = 1/165 (0%)
Query: 360 GDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINE 419
GDIIG G+ KT+ GELSI +L LL+ L LP G++D+E R+RQRYLDL+ N+
Sbjct: 119 GDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIAND 178
Query: 420 RIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRI 479
+ R F+VR++I+A +R+++ + GF+EVETPMM +I GGA+A+PF+THHN L++D+Y+RI
Sbjct: 179 KSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRI 238
Query: 480 APELYLKS-THGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPA 523
APELYLK G ++ + + + + P F + ++ A
Sbjct: 239 APELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMA 283
|
Length = 505 |
| >gnl|CDD|239817 cd04322, LysRS_N, LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 7e-32
Identities = 43/79 (54%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 337 VMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPH 396
V N EEEF + GDIIGVTG+P KTK GELSI K+ TLLS L LP
Sbjct: 31 VYVNKDDL-GEEEFEDFKKLLDLGDIIGVTGTPFKTKTGELSIFVKEFTLLSKSLRPLPE 89
Query: 397 MHFGVKDKETRFRQRYLDL 415
G+ D ETR+RQRYLDL
Sbjct: 90 KFHGLTDVETRYRQRYLDL 108
|
These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Saccharomyces cerevisiae cytoplasmic and mitochondrial LysRSs have been shown to participate in the mitochondrial import of the only nuclear-encoded tRNA of S. cerevisiae (tRNAlysCUU). The gene for human LysRS encodes both the cytoplasmic and the mitochondrial isoforms of LysRS. In addition to their housekeeping role, human lysRS may function as a signaling molecule that activates immune cells and tomato LysRS may participate in a root-specific process possibly connected to conditions of oxidative-stress conditions or heavy metal uptake. It is known that human tRNAlys and LysRS are specifically packaged into HIV-1 suggesting a role for LysRS in tRNA packaging. Length = 108 |
| >gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 1e-26
Identities = 58/153 (37%), Positives = 92/153 (60%), Gaps = 11/153 (7%)
Query: 345 QSEEEFASDLVK-----IKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSP--CLHML--P 395
Q E F + +K ++ GDIIG G P + ++GELS+ ++ +LSP C + P
Sbjct: 142 QVGEHFTREDLKKLKVSLRVGDIIGADGVPCRMQRGELSVAASRMLILSPYVCTDQVVCP 201
Query: 396 HMH-FGV-KDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMN 453
++ F V +D + ++R R+ D+M N + R ++ +R Y + F+EVETP+++
Sbjct: 202 NLRGFTVLQDNDVKYRYRFTDMMTNPCVIETIKKRHVMLQALRDYFNERNFVEVETPVLH 261
Query: 454 MIAGGATAKPFVTHHNDLNMDLYMRIAPELYLK 486
+A GA AK FVTHHN MDL++R+APEL+LK
Sbjct: 262 TVASGANAKSFVTHHNANAMDLFLRVAPELHLK 294
|
Length = 659 |
| >gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-26
Identities = 73/253 (28%), Positives = 110/253 (43%), Gaps = 19/253 (7%)
Query: 80 SDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLR-GEGLKIQVMANARMYQSEEEFAS 138
D+ + VT V G VH R+ G K++F LR G G IQ + E
Sbjct: 8 KDIKPHVGGQEVT--VRGWVHNKRDLG-KIIFLVLRDGSGF-IQAVVPK---NKVYEELF 60
Query: 139 DLVKIKRGDIIGVTG----SPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRF 194
K+ + VTG SP + +K+ +L P + ET
Sbjct: 61 KAKKLTLESSVVVTGIVKASPKA--PQGFELQVEKIEVLGEADPPYPIDKKEHSELETLL 118
Query: 195 RQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHH 254
R+LDL +I+ F +R+ I+ +R + GF EV TP++ A + F +
Sbjct: 119 DNRHLDLR-TPKIQAVFKIRSSILRAIREFFYENGFTEVHTPIITASATEGGGELFKVDY 177
Query: 255 NDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLT-HNPEFTTCEFYMAYAD 313
D Y+ +P+LY + L L+RV+ +G FR E + H EF + MA+AD
Sbjct: 178 FDKEA--YLTQSPQLYKEAL-AAALERVFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFAD 234
Query: 314 YNDLMHLTEDLIS 326
ND+M L E+LI
Sbjct: 235 LNDVMDLAEELIK 247
|
Length = 435 |
| >gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-24
Identities = 81/260 (31%), Positives = 135/260 (51%), Gaps = 31/260 (11%)
Query: 80 SDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRG-EGLKIQVMANARMYQSEEEFAS 138
S+L E VT +AG VH IR+ G + F LR G+ IQV+ + +EE
Sbjct: 8 SELTPELDGEEVT--LAGWVHEIRDLG-GIAFLILRDRSGI-IQVVVKK---KVDEELFE 60
Query: 139 DLVKIKRGDIIGVTGSPGKTKK--GELSIIPKKLTLLSPCLHMLPHMHFGVKDK-----E 191
+ K+KR ++ VTG+ K G + +IP+++ +L+ LP + K +
Sbjct: 61 TIKKLKRESVVSVTGTVKANPKAPGGVEVIPEEIEVLNKAEEPLP---LDISGKVLAELD 117
Query: 192 TRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGATA 247
TR R+LDL R+R F +R++++ R +L GF E+ TP ++A GGA
Sbjct: 118 TRLDNRFLDLR-RPRVRAIFKIRSEVLRAFREFLYENGFTEIFTP--KIVASGTEGGAEL 174
Query: 248 KPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLT-HNPEFTTCE 306
P + + + Y+ +P+LY +M+V G +RV+E+G FR E + + H E+T+ +
Sbjct: 175 FP-IDY---FEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYTSID 230
Query: 307 FYMAYAD-YNDLMHLTEDLI 325
M + D + D+M L E+L+
Sbjct: 231 VEMGFIDDHEDVMDLLENLL 250
|
Length = 437 |
| >gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 1e-23
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 403 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAK 462
+ETR + RYLDL +++ +R++II +R +LD GFLEVETP++ A+
Sbjct: 1 SEETRLKYRYLDL-RRPKMQANLKLRSKIIKAIREFLDERGFLEVETPILTKSTPEGGAR 59
Query: 463 PFVTHHNDLNMDLYMRIAPELYLK 486
F+ + Y+ +P+LY +
Sbjct: 60 DFLVPSKFYAKEAYLPQSPQLYKQ 83
|
Length = 345 |
| >gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-23
Identities = 79/261 (30%), Positives = 131/261 (50%), Gaps = 41/261 (15%)
Query: 89 ENVTLSVAGRVHAIRESGTKLMFYDLRG-EGLKIQVMANARMYQSEEEFASDLVKIKRGD 147
+ VTLS G VH R+ G L+F DLR EG+ +QV+ + E AS +++
Sbjct: 16 QTVTLS--GWVHRRRDHG-GLIFIDLRDREGI-VQVVFDPEDSPEAFEVAS---RLRNEF 68
Query: 148 IIGVTG-----SPG----KTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKD--KETRFRQ 196
+I VTG G GE+ ++ +++ +L+ LP + +E R +
Sbjct: 69 VIQVTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNAS-KTLPFQIEDETNASEEIRLKY 127
Query: 197 RYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGAT---AKPFV-- 251
RYLDL ++ +R+++ +R +LD GFLE+ETP++ +T A+ F+
Sbjct: 128 RYLDLR-RPEMQKNLKLRSKVTKAIRNFLDDQGFLEIETPIL----TKSTPEGARDFLVP 182
Query: 252 --THHNDLNMDLY-MRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHN--PEFTTCE 306
H Y + +P+L+ ++L+V G DR Y++ R FR+E DL + PEFT +
Sbjct: 183 SRVHPG----KFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDE--DLRADRQPEFTQID 236
Query: 307 FYMAYADYNDLMHLTEDLISG 327
M++ D D+M L E L+
Sbjct: 237 LEMSFVDEEDVMELIEKLLRY 257
|
Length = 585 |
| >gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 99.9 bits (249), Expect = 2e-22
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 21/252 (8%)
Query: 95 VAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGS 154
G VH IR+ G L+F LR IQ+ A A+ + + K+ ++ V G
Sbjct: 17 FMGWVHEIRDLG-GLIFVLLRDREGLIQITAPAK--KVSKNLFKWAKKLNLESVVAVRGI 73
Query: 155 PGKTKK--GELSIIPKKLTLLSPCLHMLPHMHFGVKDK-----ETRFRQRYLDLMINERI 207
+K G IIP K+ +++ LP +K +TR R+LDL +
Sbjct: 74 VKIKEKAPGGFEIIPTKIEVINEAKEPLP---LDPTEKVPAELDTRLDYRFLDLR-RPTV 129
Query: 208 RHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKPFVTHHNDLNMDLYMRI 265
+ F +R+ ++ VR +L GF+EV TP + A GG P +T+ + ++
Sbjct: 130 QAIFRIRSGVLESVREFLAEEGFIEVHTPKLVASATEGGTELFP-ITY---FEREAFLGQ 185
Query: 266 APELYLKMLVVGGLDRVYEVGRQFRNEGIDLT-HNPEFTTCEFYMAYADYNDLMHLTEDL 324
+P+LY + L+ G +RVYE+G FR E + H E T+ + MA+ D++D+M + E+L
Sbjct: 186 SPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEEL 245
Query: 325 ISGRKEDRNRPC 336
+ ED C
Sbjct: 246 VVRVFEDVPERC 257
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn) [Protein synthesis, tRNA aminoacylation]. Length = 428 |
| >gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 97.4 bits (244), Expect = 3e-21
Identities = 82/274 (29%), Positives = 134/274 (48%), Gaps = 53/274 (19%)
Query: 81 DLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRG-EGLKIQVMANARMYQSEEEFASD 139
+L ++ V + VTL G VH R+ G L+F DLR EG+ +QV+ + + E
Sbjct: 10 ELRESHVGQTVTLC--GWVHRRRDHG-GLIFIDLRDREGI-VQVVFD-----PDAEAFEV 60
Query: 140 LVKIKRGDIIGVTGS----PGKT-----KKGELSIIPKKLTLLSPCLHMLPHMHFGVKD- 189
++ +I VTG+ P T GE+ ++ +L +L+ LP +D
Sbjct: 61 AESLRSEYVIQVTGTVRARPEGTVNPNLPTGEIEVLASELEVLNKS-KTLPFPIDDEEDV 119
Query: 190 -KETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGAT-- 246
+E R + RYLDL ++ +R+++ + +R +LD GFLE+ETP++ +T
Sbjct: 120 SEELRLKYRYLDLR-RPEMQKNLKLRSKVTSAIRNFLDDNGFLEIETPIL----TKSTPE 174
Query: 247 -AKPFV----THHNDLNMDLYMRIA----PELYLKMLVVGGLDRVYEVGRQFRNEGIDLT 297
A+ ++ H Y A P+L+ ++L+V G DR Y++ R FR+E DL
Sbjct: 175 GARDYLVPSRVHPG----KFY---ALPQSPQLFKQLLMVAGFDRYYQIARCFRDE--DLR 225
Query: 298 HN--PEFTT--CEFYMAYADYNDLMHLTEDLISG 327
+ PEFT E M++ D+M L E LI
Sbjct: 226 ADRQPEFTQIDIE--MSFVTQEDVMALMEGLIRH 257
|
Length = 588 |
| >gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 4e-21
Identities = 74/260 (28%), Positives = 126/260 (48%), Gaps = 26/260 (10%)
Query: 81 DLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDL 140
L + + VTL AG V+ R+ G L+F DLR +QV+ + + A L
Sbjct: 8 QLRTEHLGQTVTL--AGWVNRRRDLG-GLIFIDLRDRSGIVQVVCDPD--ADALKLAKGL 62
Query: 141 VKIKRGDIIGVTG----SPGKTKK-----GELSIIPKKLTLLSPCLHMLPHMHFGVKDKE 191
+ D++ V G P GE+ I+ + +TLL+ + ++E
Sbjct: 63 ---RNEDVVQVKGKVSARPEGNINRNLDTGEIEILAESITLLNKSKTPPLIIEKTDAEEE 119
Query: 192 TRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGAT---AK 248
R + RYLDL ++ + +R ++ VR +LD GFLE+ETPM+ +T A+
Sbjct: 120 VRLKYRYLDLR-RPEMQQRLKLRHKVTKAVRNFLDQQGFLEIETPMLT----KSTPEGAR 174
Query: 249 PFVTHHNDLNMDLY-MRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEF 307
++ + Y + +P+L+ ++L+V G+DR Y++ R FR+E + PEFT +
Sbjct: 175 DYLVPSRVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQPEFTQIDM 234
Query: 308 YMAYADYNDLMHLTEDLISG 327
M++ D+M L E L+S
Sbjct: 235 EMSFMTQEDVMELIEKLVSH 254
|
Asparate--tRNA ligases in this family may be discriminating (6.1.1.12) or nondiscriminating (6.1.1.23). In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences [Protein synthesis, tRNA aminoacylation]. Length = 583 |
| >gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 3e-19
Identities = 77/278 (27%), Positives = 119/278 (42%), Gaps = 57/278 (20%)
Query: 81 DLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDL 140
L V VTL G V R+ G L F D+R +QV+ + A+ L
Sbjct: 65 ALSVNDVGSRVTLC--GWVDLHRDMGG-LTFLDVRDHTGIVQVVTLPDEFPEAHRTANRL 121
Query: 141 ----VKIKRGDIIG-VTGSPG-KTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKD----- 189
V G + SP K K G + ++ + + +L+ LP + +
Sbjct: 122 RNEYVVAVEGTVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVTTADEQKDSI 181
Query: 190 -KETRFRQRYLDL-----MINERIRHKFIVRAQIIAYVRRYL-DSLGFLEVETPMMN--- 239
+E R R R LDL N R+RH+ +V+ +RRYL D GF+E+ETP+++
Sbjct: 182 KEEVRLRYRVLDLRRPQMNANLRLRHR-VVKL-----IRRYLEDVHGFVEIETPILSRST 235
Query: 240 ------------MIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGR 287
+ G A P +P+L+ +ML+V G DR Y++ R
Sbjct: 236 PEGARDYLVPSRVQPGTFYALP---------------QSPQLFKQMLMVSGFDRYYQIAR 280
Query: 288 QFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLI 325
FR+E + PEFT + +A+ D++ L EDLI
Sbjct: 281 CFRDEDLRADRQPEFTQLDMELAFTPLEDMLKLNEDLI 318
|
Length = 652 |
| >gnl|CDD|225178 COG2269, COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 5e-19
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 7/118 (5%)
Query: 214 RAQIIAYVRRYLDSLGFLEVETPMMNMIAGG------ATAKPFVTHHNDLNMDLYMRIAP 267
RA IIA +RR+ G LEVETP ++ +A F+ L++ +P
Sbjct: 19 RAAIIAAIRRFFAERGVLEVETPALS-VAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSP 77
Query: 268 ELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLI 325
E ++K L+ G ++++G+ FRNE + HNPEFT E+Y DY LM+ +DL+
Sbjct: 78 EYHMKRLLAAGSGPIFQLGKVFRNEEMGRLHNPEFTMLEWYRVGCDYYRLMNEVDDLL 135
|
Length = 322 |
| >gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 3e-18
Identities = 32/62 (51%), Positives = 46/62 (74%)
Query: 425 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELY 484
F VR++II +R ++D GFLEVETPM+ I GGA A+PF+ +N L +D Y+RI+P+L+
Sbjct: 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLF 60
Query: 485 LK 486
K
Sbjct: 61 KK 62
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. Length = 269 |
| >gnl|CDD|232984 TIGR00462, genX, EF-P lysine aminoacylase GenX | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 3e-17
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 229 GFLEVETPMMNMIAGGATA---KPFVTH---HNDLNMDLYMRIAPELYLKMLVVGGLDRV 282
G LEVETP++ T F T + LY++ +PE +K L+ G +
Sbjct: 6 GVLEVETPLL--SPAPVTDPHLDAFATEFVGPDGQGRPLYLQTSPEYAMKRLLAAGSGPI 63
Query: 283 YEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDRNRP 335
+++ + FRN HNPEFT E+Y DY+DLM E L+ D P
Sbjct: 64 FQICKVFRNGERGRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGDPFAP 116
|
Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown [Unknown function, General]. Length = 290 |
| >gnl|CDD|239766 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 4e-17
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 92 TLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGV 151
+++AG VH+ R+ G L+F DLR +QV+ N + EF + K++ ++GV
Sbjct: 1 EVTLAGWVHSRRDHG-GLIFIDLRDGSGIVQVVVNK---EELGEFFEEAEKLRTESVVGV 56
Query: 152 TGSPGKT-----KKGELSIIPKKLTLLSP 175
TG+ K GE+ + ++L +LS
Sbjct: 57 TGTVVKRPEGNLATGEIELQAEELEVLSK 85
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like AspRSs which are non-discriminating and can charge both tRNAAsp and tRNAAsn. E. coli cells have two isoforms of LysRSs (LysS and LysU) encoded by two distinct genes, which are differentially regulated. The cytoplasmic and the mitochondrial isoforms of human LysRS are encoded by a single gene. Yeast cytoplasmic and mitochondrial LysRSs participate in mitochondrial import of cytoplasmic tRNAlysCUU. In addition to their housekeeping role, human LysRS may function as a signaling molecule that activates immune cells. Tomato LysRS may participate in a process possibly connected to conditions of oxidative-stress conditions or heavy metal uptake. It is known that human tRNAlys and LysRS are specifically packaged into HIV-1 suggesting a role for LysRS in tRNA packaging. AsnRS is immunodominant antigen of the filarial nematode Brugia malayai and is of interest as a target for anti-parasitic drug design. Human AsnRS has been shown to be a pro-inflammatory chemokine which interacts with CCR3 chemokine receptors on T cells, immature dendritic cells and macrophages. Length = 85 |
| >gnl|CDD|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (199), Expect = 6e-16
Identities = 64/256 (25%), Positives = 122/256 (47%), Gaps = 33/256 (12%)
Query: 95 VAGRVHAIRESGTKLMFYDLRGEGLKIQVM-----ANARMYQSEEEFASDLVKIKRGDI- 148
+AG V A R+ G +L+F LR IQ + A A +Y+ ++ +G++
Sbjct: 23 LAGWVDAFRDHG-ELLFIHLRDRNGFIQAVFSPEAAPADVYELAASLRAEFCVALQGEVQ 81
Query: 149 --IGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK---------------- 190
+ T +P + G++ + ++L++L+ LP F + DK
Sbjct: 82 KRLEETENP-HIETGDIEVFVRELSILAASE-ALP---FAISDKAMTAGAGSAGADAVNE 136
Query: 191 ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPF 250
+ R + RYLD+ ++ R +II R +LDS GFLE+ETP++ + A+ +
Sbjct: 137 DLRLQYRYLDIR-RPAMQDHLAKRHRIIKCARDFLDSRGFLEIETPILTK-STPEGARDY 194
Query: 251 VTHHNDLNMDLY-MRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYM 309
+ + Y + +P+L+ ++L++ G +R +++ R FR+E + PEFT +
Sbjct: 195 LVPSRIHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFRDEDLRPNRQPEFTQLDIEA 254
Query: 310 AYADYNDLMHLTEDLI 325
++ D + L E+L
Sbjct: 255 SFIDEEFIFELIEELT 270
|
Length = 706 |
| >gnl|CDD|236474 PRK09350, PRK09350, poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 9e-16
Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 13/120 (10%)
Query: 214 RAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATA-----KPFVTH----HNDLNMDLYMR 264
RA+IIA +RR+ G LEVETP+++ AT PF T L++
Sbjct: 8 RAKIIAEIRRFFADRGVLEVETPILSQ----ATVTDIHLVPFETRFVGPGASQGKTLWLM 63
Query: 265 IAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDL 324
+PE ++K L+ G ++++ + FRNE HNPEFT E+Y + D LM+ +DL
Sbjct: 64 TSPEYHMKRLLAAGSGPIFQICKSFRNEEAGRYHNPEFTMLEWYRPHYDMYRLMNEVDDL 123
|
Length = 306 |
| >gnl|CDD|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 6e-14
Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 12/123 (9%)
Query: 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGAT---AKPFVT---HHNDLNMDLYMR 264
+R+++I +R +LD GF+E+ETP++ +T A+ F+ H L
Sbjct: 1 LRLRSRVIKAIRNFLDEQGFVEIETPIL----TKSTPEGARDFLVPSRLHPGKFYALPQ- 55
Query: 265 IAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDL 324
+P+L+ ++L+V G DR +++ R FR+E + PEFT + M++ D D+M L E L
Sbjct: 56 -SPQLFKQLLMVSGFDRYFQIARCFRDEDLRADRQPEFTQIDIEMSFVDQEDIMSLIEGL 114
Query: 325 ISG 327
+
Sbjct: 115 LKY 117
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. Length = 280 |
| >gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 1e-13
Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 16/130 (12%)
Query: 213 VRAQIIAYVRRYLDSLGFLEVETP-MMNMIAGGAT---AKPFVTHHNDLNMDLYMRIAPE 268
+R++I +RR++ LGF EVETP + K + + DLY+R E
Sbjct: 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLE 60
Query: 269 LYLKMLVVGGL----DRVYEVGRQFRNEGI--DLTHNPEFTTCEFYMAYAD------YND 316
L L V + R+ E+G FRNEG L EFT E + D + +
Sbjct: 61 PGLVRLFVSHIRKLPLRLAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFEE 120
Query: 317 LMHLTEDLIS 326
L+ LTE+L+
Sbjct: 121 LIELTEELLR 130
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. Length = 211 |
| >gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 10/140 (7%)
Query: 191 ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMM--NMIAGGATAK 248
ET R+LDL +++ F +R++++ R +L GF EV TP + GGA
Sbjct: 5 ETLLDNRHLDLR-TPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELF 63
Query: 249 PFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLT-HNPEFTTCEF 307
+ Y+ +P+LY +ML + L+RVYE+G FR E + H EF E
Sbjct: 64 KV----SYFGKPAYLAQSPQLYKEML-IAALERVYEIGPVFRAEKSNTRRHLSEFWMLEA 118
Query: 308 YMAYA-DYNDLMHLTEDLIS 326
MA+ DYN++M L E+LI
Sbjct: 119 EMAFIEDYNEVMDLIEELIK 138
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 322 |
| >gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 71.6 bits (177), Expect = 4e-13
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 375 GELSIIPKKLTLLSPCLHMLPHMHFGVKD--KETRFRQRYLDLMINERIRHKFIVRAQII 432
GE+ ++ +L +L+ LP +D +E R + RYLDL ++ +R+++
Sbjct: 91 GEIEVLASELEVLNKS-KTLPFPIDDEEDVSEELRLKYRYLDLR-RPEMQKNLKLRSKVT 148
Query: 433 AYVRRYLDSLGFLEVETPMM 452
+ +R +LD GFLE+ETP++
Sbjct: 149 SAIRNFLDDNGFLEIETPIL 168
|
Length = 588 |
| >gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 9e-13
Identities = 76/276 (27%), Positives = 121/276 (43%), Gaps = 55/276 (19%)
Query: 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRG- 146
L + + GRVH IR G K F LR G +Q + + SE + +VK +
Sbjct: 79 LAGSEVLIRGRVHTIRGKG-KSAFLVLRQSGFTVQCVV----FVSEVTVSKGMVKYAKQL 133
Query: 147 ------DIIGVTGSPGKTKKG---ELSIIPKKLTLLSPCLHMLPHMHFGVKD-------- 189
D+ GV P K KG ++ I +K+ +S L LP F V+D
Sbjct: 134 SRESVVDVEGVVSVPKKPVKGTTQQVEIQVRKIYCVSKALATLP---FNVEDAARSESEI 190
Query: 190 --------------KETRFRQRYLDLMI--NERIRHKFIVRAQIIAYVRRYLDSLGFLEV 233
++TR R LDL N+ I F +++Q+ R +L S GF+E+
Sbjct: 191 EKALQTGEQLVRVGQDTRLNNRVLDLRTPANQAI---FRIQSQVCNLFREFLLSKGFVEI 247
Query: 234 ETPMMNMIAGGAT--AKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRN 291
TP +IAG + + F + L +P+L+ +M + G RV+E+G FR
Sbjct: 248 HTP--KLIAGASEGGSAVFRLDYKGQPACLAQ--SPQLHKQMAICGDFRRVFEIGPVFRA 303
Query: 292 EGIDLTHNP--EFTTCEFYMAYAD-YNDLMHLTEDL 324
E TH EFT + M + Y++++ + ++L
Sbjct: 304 ED-SFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDEL 338
|
Length = 530 |
| >gnl|CDD|216440 pfam01336, tRNA_anti, OB-fold nucleic acid binding domain | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 4e-12
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTG 153
+VAGRV ++R SG K+ F LR IQV+ +EE K+K GD++ VTG
Sbjct: 2 TVAGRVTSVRRSGGKVAFLTLRDGTGSIQVVLF------KEEAEKLAKKLKEGDVVLVTG 55
Query: 154 SPGKTKKGELSIIPKKLTLL 173
K GEL ++ +++ +L
Sbjct: 56 KVKKRPGGELELVVEEIEVL 75
|
This family contains OB-fold domains that bind to nucleic acids. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (See pfam00152). Aminoacyl-tRNA synthetases catalyze the addition of an amino acid to the appropriate tRNA molecule EC:6.1.1.-. This family also includes part of RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family. This domain is also found at the C-terminus of bacterial DNA polymerase III alpha chain. Length = 75 |
| >gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 7e-11
Identities = 68/264 (25%), Positives = 107/264 (40%), Gaps = 42/264 (15%)
Query: 86 QVLENVTLSVAGRVHAIRESGTKLMFYDLR-GEGLK-IQVMANARMYQSEEEFASDLVKI 143
V + VT+S G V R S K++F +L G L IQ + N + L
Sbjct: 14 FVGDEVTVS--GWVRTKRSSK-KIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKSL--- 67
Query: 144 KRGDIIGVTG----SPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFR---- 195
G + VTG SPGK + EL + KK+ ++ + ++ KE
Sbjct: 68 TTGSSVSVTGKVVESPGKGQPVELQV--KKIEVVGE----AEPDDYPLQKKEHSLEFLRD 121
Query: 196 QRYLDLMINERIRHKFI-----VRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPF 250
+L R+R + VR + + RY GF V P++ + F
Sbjct: 122 IAHL------RLRTNTLGAVMRVRNALSQAIHRYFQENGFTWVSPPILTSNDCEGAGELF 175
Query: 251 VTHHNDL-------NMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLT-HNPEF 302
++ + Y+ ++ +LYL+ + L +VY G FR E + + H EF
Sbjct: 176 RVSTGNIDFSQDFFGKEAYLTVSGQLYLETYALA-LSKVYTFGPTFRAEKSNTSRHLSEF 234
Query: 303 TTCEFYMAYADYNDLMHLTEDLIS 326
E MA+A+ NDL+ L E LI
Sbjct: 235 WMIEPEMAFANLNDLLQLAETLIK 258
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn [Protein synthesis, tRNA aminoacylation]. Length = 453 |
| >gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 1e-10
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 13/107 (12%)
Query: 356 KIKRGDIIGVTG-----SPG----KTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKD--K 404
+++ +I VTG G GE+ ++ +++ +L+ LP + +
Sbjct: 63 RLRNEFVIQVTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNAS-KTLPFQIEDETNASE 121
Query: 405 ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPM 451
E R + RYLDL ++ +R+++ +R +LD GFLE+ETP+
Sbjct: 122 EIRLKYRYLDLR-RPEMQKNLKLRSKVTKAIRNFLDDQGFLEIETPI 167
|
Length = 585 |
| >gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 3e-09
Identities = 62/256 (24%), Positives = 108/256 (42%), Gaps = 32/256 (12%)
Query: 92 TLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLV----KIKRGD 147
T+ + RV R+ G K+ F LR +Q MA E + +++ +I
Sbjct: 80 TVLIRARVSTTRKKG-KMAFMVLRDGSDSVQAMAAV-----EGDVPKEMIDFIGQIPTES 133
Query: 148 IIGVTGSPGK-------TKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKE--------- 191
I+ V + K T ++ + KK+ ++ L LP KE
Sbjct: 134 IVDVEATVCKVEQPITSTSHSDIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVNF 193
Query: 192 -TRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPF 250
TR R++DL F +++++ Y R++L F E+ +P + A F
Sbjct: 194 DTRLNSRWMDLRTPAS-GAIFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVF 252
Query: 251 VTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYM 309
+ N Y+ +P+LY +M++ G + RV+EVG FR+E + H EF + M
Sbjct: 253 KLEY--FNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHLTEFVGLDVEM 310
Query: 310 AYAD-YNDLMHLTEDL 324
+ Y +++ L E L
Sbjct: 311 RINEHYYEVLDLAESL 326
|
Length = 550 |
| >gnl|CDD|235808 PRK06462, PRK06462, asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 5e-09
Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 202 MINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-----GGATAKPFVTHHND 256
+ +E+ R V++ I+ Y R +LD GF+EV P+++ G+ +
Sbjct: 21 ISSEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDF 80
Query: 257 LNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGID---LTHNPEFTTCEFYMAYAD 313
++ Y+ + L+ ++ + L +++ + FR E +D H EFT + + AD
Sbjct: 81 YGVEYYLADSMILHKQLALR-MLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGAD 139
Query: 314 YNDLMHLTEDLISG 327
+++M L EDLI
Sbjct: 140 LDEVMDLIEDLIKY 153
|
Length = 335 |
| >gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 11/113 (9%)
Query: 345 QSEEEFASDLVKIKRGDIIGVTGSPGKTKK--GELSIIPKKLTLLSPCLHMLPHMHFGVK 402
+ +EE + K+KR ++ VTG+ K G + +IP+++ +L+ LP +
Sbjct: 53 KVDEELFETIKKLKRESVVSVTGTVKANPKAPGGVEVIPEEIEVLNKAEEPLP---LDIS 109
Query: 403 DK-----ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETP 450
K +TR R+LDL R+R F +R++++ R +L GF E+ TP
Sbjct: 110 GKVLAELDTRLDNRFLDLR-RPRVRAIFKIRSEVLRAFREFLYENGFTEIFTP 161
|
Length = 437 |
| >gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 11/145 (7%)
Query: 345 QSEEEFASDLVKIKRGDIIGVTG----SPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFG 400
EE F K+ + VTG SP + +K+ +L P
Sbjct: 55 VYEELF--KAKKLTLESSVVVTGIVKASPKA--PQGFELQVEKIEVLGEADPPYPIDKKE 110
Query: 401 VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGAT 460
+ ET R+LDL +I+ F +R+ I+ +R + GF EV TP++ A
Sbjct: 111 HSELETLLDNRHLDLR-TPKIQAVFKIRSSILRAIREFFYENGFTEVHTPIITASATEGG 169
Query: 461 AKPFVTHHNDLNMDLYMRIAPELYL 485
+ F + D Y+ +P+LY
Sbjct: 170 GELFKVDYFDKEA--YLTQSPQLYK 192
|
Length = 435 |
| >gnl|CDD|239812 cd04317, EcAspRS_like_N, EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 2e-07
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 21/129 (16%)
Query: 85 AQVLENVTLSVAGRVHAIRESGTKLMFYDLR-GEGLKIQVMANARMYQSEEEFASDLVKI 143
+ V + VTL G V R+ G L+F DLR G+ +QV+ + + EF K+
Sbjct: 11 SHVGQEVTL--CGWVQRRRDHG-GLIFIDLRDRYGI-VQVVFDP---EEAPEFEL-AEKL 62
Query: 144 KRGDIIGVTG-----SPG----KTKKGELSIIPKKLTLLSPC--LHMLPHMHFGVKDKET 192
+ +I VTG G K GE+ ++ +L +L+ L V +E
Sbjct: 63 RNESVIQVTGKVRARPEGTVNPKLPTGEIEVVASELEVLNKAKTLPFEIDDDVNV-SEEL 121
Query: 193 RFRQRYLDL 201
R + RYLDL
Sbjct: 122 RLKYRYLDL 130
|
These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with mitochondrial protein synthesis. Human mtAspRS participates in mitochondrial biosynthesis; this enzyme been shown to charge E.coli native tRNAsp in addition to in vitro transcribed human mitochondrial tRNAsp. T. thermophilus is rare among bacteria in having both a D_AspRS and a ND_AspRS. H.pylori ND-AspRS can charge both tRNAASp and tRNAAsn, it is fractionally more efficient at aminoacylating tRNAAsp over tRNAAsn. The H.pylori genome does not contain AsnRS. Length = 135 |
| >gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 371 KTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQ 430
GE+ I+ + +TLL+ + ++E R + RYLDL ++ + +R +
Sbjct: 85 NLDTGEIEILAESITLLNKSKTPPLIIEKTDAEEEVRLKYRYLDLR-RPEMQQRLKLRHK 143
Query: 431 IIAYVRRYLDSLGFLEVETPMM 452
+ VR +LD GFLE+ETPM+
Sbjct: 144 VTKAVRNFLDQQGFLEIETPML 165
|
Asparate--tRNA ligases in this family may be discriminating (6.1.1.12) or nondiscriminating (6.1.1.23). In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences [Protein synthesis, tRNA aminoacylation]. Length = 583 |
| >gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 18/95 (18%)
Query: 371 KTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKD------KETRFRQRYLDL-----MINE 419
K K G + ++ + + +L+ LP + + +E R R R LDL N
Sbjct: 144 KMKTGSVEVVAESVDILNVVTKSLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANL 203
Query: 420 RIRHKFIVRAQIIAYVRRYL-DSLGFLEVETPMMN 453
R+RH+ +V+ +RRYL D GF+E+ETP+++
Sbjct: 204 RLRHR-VVKL-----IRRYLEDVHGFVEIETPILS 232
|
Length = 652 |
| >gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 356 KIKRGDIIGVTGSPGKTKK--GELSIIPKKLTLLSPCLHMLPHMHFGVKDK-----ETRF 408
K+ ++ V G +K G IIP K+ +++ LP +K +TR
Sbjct: 61 KLNLESVVAVRGIVKIKEKAPGGFEIIPTKIEVINEAKEPLP---LDPTEKVPAELDTRL 117
Query: 409 RQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETP 450
R+LDL ++ F +R+ ++ VR +L GF+EV TP
Sbjct: 118 DYRFLDLR-RPTVQAIFRIRSGVLESVREFLAEEGFIEVHTP 158
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn) [Protein synthesis, tRNA aminoacylation]. Length = 428 |
| >gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 5e-05
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Query: 460 TAKPFVTHHNDLNMDLYMRIAPELYLKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLH 519
T + + D+ L MR+ +G+ V +P+ G+PV +D PFRR+
Sbjct: 335 TYEDLMPMTEDIFRQLAMRV---------NGTTVVQIYPENAH-GNPVTVDLGKPFRRVS 384
Query: 520 MFPALEAALGVKLPNPTEFDTPEANKFLS 548
++ ++ GV+ P P E +TP+ ++S
Sbjct: 385 VYDEIQRMSGVEFPPPNELNTPKGIAYMS 413
|
Length = 659 |
| >gnl|CDD|239766 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 6e-05
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 345 QSEEEFASDLVKIKRGDIIGVTGSPGKT-----KKGELSIIPKKLTLLSP 389
+ EF + K++ ++GVTG+ K GE+ + ++L +LS
Sbjct: 36 EELGEFFEEAEKLRTESVVGVTGTVVKRPEGNLATGEIELQAEELEVLSK 85
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like AspRSs which are non-discriminating and can charge both tRNAAsp and tRNAAsn. E. coli cells have two isoforms of LysRSs (LysS and LysU) encoded by two distinct genes, which are differentially regulated. The cytoplasmic and the mitochondrial isoforms of human LysRS are encoded by a single gene. Yeast cytoplasmic and mitochondrial LysRSs participate in mitochondrial import of cytoplasmic tRNAlysCUU. In addition to their housekeeping role, human LysRS may function as a signaling molecule that activates immune cells. Tomato LysRS may participate in a process possibly connected to conditions of oxidative-stress conditions or heavy metal uptake. It is known that human tRNAlys and LysRS are specifically packaged into HIV-1 suggesting a role for LysRS in tRNA packaging. AsnRS is immunodominant antigen of the filarial nematode Brugia malayai and is of interest as a target for anti-parasitic drug design. Human AsnRS has been shown to be a pro-inflammatory chemokine which interacts with CCR3 chemokine receptors on T cells, immature dendritic cells and macrophages. Length = 85 |
| >gnl|CDD|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 2e-04
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 403 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNM 454
+++ R + RYLD+ ++ R +II R +LDS GFLE+ETP++
Sbjct: 135 NEDLRLQYRYLDIR-RPAMQDHLAKRHRIIKCARDFLDSRGFLEIETPILTK 185
|
Length = 706 |
| >gnl|CDD|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 425 FIVRAQIIAYVRRYLDSLGFLEVETPM 451
+R+++I +R +LD GF+E+ETP+
Sbjct: 1 LRLRSRVIKAIRNFLDEQGFVEIETPI 27
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. Length = 280 |
| >gnl|CDD|225178 COG2269, COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 428 RAQIIAYVRRYLDSLGFLEVETPMMNMIAGG------ATAKPFVTHHNDLNMDLYMRIAP 481
RA IIA +RR+ G LEVETP ++ +A F+ L++ +P
Sbjct: 19 RAAIIAAIRRFFAERGVLEVETPALS-VAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSP 77
Query: 482 ELYLK 486
E ++K
Sbjct: 78 EYHMK 82
|
Length = 322 |
| >gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 4e-04
Identities = 66/268 (24%), Positives = 107/268 (39%), Gaps = 45/268 (16%)
Query: 82 LPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLR-GEGLK-IQVMANARMYQSEEEFASD 139
L V + VT V G V R+SG K+ F LR G K +QV+ + EE+ +
Sbjct: 10 LKGKYVGQEVT--VRGWVRTKRDSG-KIAFLQLRDGSCFKQLQVVKDN-----GEEYFEE 61
Query: 140 LVKIKRGDIIGVTG----SPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFR 195
+ K+ G + VTG SP + EL K+ ++ P ++ K
Sbjct: 62 IKKLTTGSSVIVTGTVVESPRAGQGYELQA--TKIEVIGEDPEDYP-----IQKKRHSIE 114
Query: 196 ----QRYLDLMINERIRHK-----FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGAT 246
+L R R +R + + + + GF+ V+TP++
Sbjct: 115 FLREIAHL------RPRTNKFGAVMRIRNTLAQAIHEFFNENGFVWVDTPIITASDCEGA 168
Query: 247 AKPFVTHHNDLNMDL-------YMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLT-H 298
+ F DL+ Y+ ++ +LY + + L +VY G FR E + H
Sbjct: 169 GELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAYAMA-LGKVYTFGPTFRAENSNTRRH 227
Query: 299 NPEFTTCEFYMAYADYNDLMHLTEDLIS 326
EF E MA+AD D M L E+++
Sbjct: 228 LAEFWMIEPEMAFADLEDNMDLAEEMLK 255
|
Length = 450 |
| >gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 427 VRAQIIAYVRRYLDSLGFLEVETP-MMNMIAGGAT---AKPFVTHHNDLNMDLYMRIAPE 482
+R++I +RR++ LGF EVETP + K + + DLY+R E
Sbjct: 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLE 60
Query: 483 LYLKSTHGS 491
L S
Sbjct: 61 PGLVRLFVS 69
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. Length = 211 |
| >gnl|CDD|239811 cd04316, ND_PkAspRS_like_N, ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 8e-04
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 92 TLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGV 151
++VAG VH IR+ G + F LR +QV A + + ++E + K+ R +I V
Sbjct: 14 EVTVAGWVHEIRDLG-GIKFVILRDREGIVQVTAPKK--KVDKELFKTVRKLSRESVISV 70
Query: 152 TGSPGKTKK--GELSIIPKKLTLLS 174
TG+ K + IIP+++ +LS
Sbjct: 71 TGTVKAEPKAPNGVEIIPEEIEVLS 95
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes. Length = 108 |
| >gnl|CDD|216440 pfam01336, tRNA_anti, OB-fold nucleic acid binding domain | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.002
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 347 EEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLL 387
+EE K+K GD++ VTG K GEL ++ +++ +L
Sbjct: 35 KEEAEKLAKKLKEGDVVLVTGKVKKRPGGELELVVEEIEVL 75
|
This family contains OB-fold domains that bind to nucleic acids. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (See pfam00152). Aminoacyl-tRNA synthetases catalyze the addition of an amino acid to the appropriate tRNA molecule EC:6.1.1.-. This family also includes part of RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family. This domain is also found at the C-terminus of bacterial DNA polymerase III alpha chain. Length = 75 |
| >gnl|CDD|232988 TIGR00468, pheS, phenylalanyl-tRNA synthetase, alpha subunit | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYN----DLMHLTEDLIS---GRKEDRN 333
R++ GR FRN+ +D TH PEF E D N +L E+ + G E R
Sbjct: 152 RIFSPGRVFRNDTVDATHLPEFHQVEG--LVIDKNISFTNLKGFLEEFLKKMFGETEIRF 209
Query: 334 RP 335
RP
Sbjct: 210 RP 211
|
Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment [Protein synthesis, tRNA aminoacylation]. Length = 293 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 553 | |||
| KOG1885|consensus | 560 | 100.0 | ||
| COG1190 | 502 | LysU Lysyl-tRNA synthetase (class II) [Translation | 100.0 | |
| PLN02502 | 553 | lysyl-tRNA synthetase | 100.0 | |
| TIGR00499 | 496 | lysS_bact lysyl-tRNA synthetase, eukaryotic and no | 100.0 | |
| PRK12445 | 505 | lysyl-tRNA synthetase; Reviewed | 100.0 | |
| PTZ00417 | 585 | lysine-tRNA ligase; Provisional | 100.0 | |
| PRK00484 | 491 | lysS lysyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK02983 | 1094 | lysS lysyl-tRNA synthetase; Provisional | 100.0 | |
| PTZ00385 | 659 | lysyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02850 | 530 | aspartate-tRNA ligase | 100.0 | |
| TIGR00458 | 428 | aspS_arch aspartyl-tRNA synthetase, archaeal type. | 100.0 | |
| PRK05159 | 437 | aspC aspartyl-tRNA synthetase; Provisional | 100.0 | |
| PTZ00401 | 550 | aspartyl-tRNA synthetase; Provisional | 100.0 | |
| TIGR00459 | 583 | aspS_bact aspartyl-tRNA synthetase, bacterial type | 100.0 | |
| COG0017 | 435 | AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl | 100.0 | |
| PRK03932 | 450 | asnC asparaginyl-tRNA synthetase; Validated | 100.0 | |
| TIGR00457 | 453 | asnS asparaginyl-tRNA synthetase. In a multiple se | 100.0 | |
| PLN02903 | 652 | aminoacyl-tRNA ligase | 100.0 | |
| PRK00476 | 588 | aspS aspartyl-tRNA synthetase; Validated | 100.0 | |
| PRK12820 | 706 | bifunctional aspartyl-tRNA synthetase/aspartyl/glu | 100.0 | |
| PLN02603 | 565 | asparaginyl-tRNA synthetase | 100.0 | |
| COG0173 | 585 | AspS Aspartyl-tRNA synthetase [Translation, riboso | 100.0 | |
| PLN02221 | 572 | asparaginyl-tRNA synthetase | 100.0 | |
| PTZ00425 | 586 | asparagine-tRNA ligase; Provisional | 100.0 | |
| KOG0556|consensus | 533 | 100.0 | ||
| PLN02532 | 633 | asparagine-tRNA synthetase | 100.0 | |
| KOG0555|consensus | 545 | 100.0 | ||
| KOG2411|consensus | 628 | 100.0 | ||
| KOG0554|consensus | 446 | 100.0 | ||
| cd00775 | 329 | LysRS_core Lys_tRNA synthetase (LysRS) class II co | 100.0 | |
| PF00152 | 335 | tRNA-synt_2: tRNA synthetases class II (D, K and N | 100.0 | |
| cd00776 | 322 | AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class | 100.0 | |
| PRK06462 | 335 | asparagine synthetase A; Reviewed | 100.0 | |
| PRK12445 | 505 | lysyl-tRNA synthetase; Reviewed | 99.98 | |
| KOG1885|consensus | 560 | 99.98 | ||
| TIGR00499 | 496 | lysS_bact lysyl-tRNA synthetase, eukaryotic and no | 99.97 | |
| COG1190 | 502 | LysU Lysyl-tRNA synthetase (class II) [Translation | 99.97 | |
| PRK05159 | 437 | aspC aspartyl-tRNA synthetase; Provisional | 99.97 | |
| PTZ00417 | 585 | lysine-tRNA ligase; Provisional | 99.97 | |
| PLN02502 | 553 | lysyl-tRNA synthetase | 99.97 | |
| TIGR00462 | 304 | genX lysyl-tRNA synthetase-like protein GenX. Many | 99.97 | |
| TIGR00458 | 428 | aspS_arch aspartyl-tRNA synthetase, archaeal type. | 99.97 | |
| PRK00484 | 491 | lysS lysyl-tRNA synthetase; Reviewed | 99.97 | |
| TIGR00459 | 583 | aspS_bact aspartyl-tRNA synthetase, bacterial type | 99.97 | |
| COG0173 | 585 | AspS Aspartyl-tRNA synthetase [Translation, riboso | 99.97 | |
| PRK00476 | 588 | aspS aspartyl-tRNA synthetase; Validated | 99.97 | |
| PTZ00385 | 659 | lysyl-tRNA synthetase; Provisional | 99.97 | |
| PRK02983 | 1094 | lysS lysyl-tRNA synthetase; Provisional | 99.96 | |
| PLN02903 | 652 | aminoacyl-tRNA ligase | 99.96 | |
| PLN02532 | 633 | asparagine-tRNA synthetase | 99.96 | |
| PRK12820 | 706 | bifunctional aspartyl-tRNA synthetase/aspartyl/glu | 99.96 | |
| PLN02850 | 530 | aspartate-tRNA ligase | 99.96 | |
| PRK03932 | 450 | asnC asparaginyl-tRNA synthetase; Validated | 99.96 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 99.96 | |
| PTZ00401 | 550 | aspartyl-tRNA synthetase; Provisional | 99.96 | |
| COG0017 | 435 | AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl | 99.96 | |
| TIGR00457 | 453 | asnS asparaginyl-tRNA synthetase. In a multiple se | 99.96 | |
| PLN02221 | 572 | asparaginyl-tRNA synthetase | 99.96 | |
| cd00777 | 280 | AspRS_core Asp tRNA synthetase (aspRS) class II co | 99.95 | |
| PTZ00425 | 586 | asparagine-tRNA ligase; Provisional | 99.95 | |
| PRK09350 | 306 | poxB regulator PoxA; Provisional | 99.95 | |
| PLN02603 | 565 | asparaginyl-tRNA synthetase | 99.95 | |
| KOG0556|consensus | 533 | 99.94 | ||
| COG2269 | 322 | Truncated, possibly inactive, lysyl-tRNA synthetas | 99.91 | |
| cd04322 | 108 | LysRS_N LysRS_N: N-terminal, anticodon recognition | 99.89 | |
| KOG2411|consensus | 628 | 99.88 | ||
| KOG0554|consensus | 446 | 99.88 | ||
| PF00152 | 335 | tRNA-synt_2: tRNA synthetases class II (D, K and N | 99.84 | |
| PRK06462 | 335 | asparagine synthetase A; Reviewed | 99.82 | |
| cd00776 | 322 | AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class | 99.82 | |
| cd04317 | 135 | EcAspRS_like_N EcAspRS_like_N: N-terminal, anticod | 99.81 | |
| KOG0555|consensus | 545 | 99.79 | ||
| cd04319 | 103 | PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticod | 99.73 | |
| cd04320 | 102 | AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon r | 99.72 | |
| TIGR00462 | 304 | genX lysyl-tRNA synthetase-like protein GenX. Many | 99.7 | |
| COG2269 | 322 | Truncated, possibly inactive, lysyl-tRNA synthetas | 99.7 | |
| cd04316 | 108 | ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, a | 99.69 | |
| cd00775 | 329 | LysRS_core Lys_tRNA synthetase (LysRS) class II co | 99.64 | |
| cd00777 | 280 | AspRS_core Asp tRNA synthetase (aspRS) class II co | 99.61 | |
| PRK09350 | 306 | poxB regulator PoxA; Provisional | 99.59 | |
| cd04100 | 85 | Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, ant | 99.58 | |
| cd04321 | 86 | ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, a | 99.55 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 99.52 | |
| cd04318 | 82 | EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticod | 99.51 | |
| cd04323 | 84 | AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, a | 99.5 | |
| PRK09537 | 417 | pylS pyrolysyl-tRNA synthetase; Reviewed | 99.32 | |
| cd04322 | 108 | LysRS_N LysRS_N: N-terminal, anticodon recognition | 99.13 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 99.12 | |
| PF01336 | 75 | tRNA_anti-codon: OB-fold nucleic acid binding doma | 99.05 | |
| cd04317 | 135 | EcAspRS_like_N EcAspRS_like_N: N-terminal, anticod | 98.93 | |
| TIGR02367 | 453 | PylS pyrrolysyl-tRNA synthetase. PylS is the archa | 98.92 | |
| cd00773 | 261 | HisRS-like_core Class II Histidinyl-tRNA synthetas | 98.7 | |
| cd04319 | 103 | PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticod | 98.67 | |
| cd00496 | 218 | PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe | 98.62 | |
| PF01409 | 247 | tRNA-synt_2d: tRNA synthetases class II core domai | 98.61 | |
| COG0124 | 429 | HisS Histidyl-tRNA synthetase [Translation, riboso | 98.59 | |
| TIGR00442 | 397 | hisS histidyl-tRNA synthetase. This model finds a | 98.54 | |
| PF00587 | 173 | tRNA-synt_2b: tRNA synthetase class II core domain | 98.51 | |
| cd00670 | 235 | Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t | 98.49 | |
| CHL00201 | 430 | syh histidine-tRNA synthetase; Provisional | 98.47 | |
| PRK12292 | 391 | hisZ ATP phosphoribosyltransferase regulatory subu | 98.44 | |
| PLN02972 | 763 | Histidyl-tRNA synthetase | 98.41 | |
| PLN02530 | 487 | histidine-tRNA ligase | 98.39 | |
| cd00772 | 264 | ProRS_core Prolyl-tRNA synthetase (ProRS) class II | 98.37 | |
| TIGR00468 | 294 | pheS phenylalanyl-tRNA synthetase, alpha subunit. | 98.37 | |
| PTZ00326 | 494 | phenylalanyl-tRNA synthetase alpha chain; Provisio | 98.36 | |
| PRK00037 | 412 | hisS histidyl-tRNA synthetase; Reviewed | 98.34 | |
| TIGR00443 | 314 | hisZ_biosyn_reg ATP phosphoribosyltransferase, reg | 98.33 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 98.32 | |
| PRK12421 | 392 | ATP phosphoribosyltransferase regulatory subunit; | 98.3 | |
| PRK00488 | 339 | pheS phenylalanyl-tRNA synthetase subunit alpha; V | 98.3 | |
| cd00774 | 254 | GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik | 98.29 | |
| PF13393 | 311 | tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI | 98.28 | |
| cd04320 | 102 | AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon r | 98.26 | |
| PRK12293 | 281 | hisZ ATP phosphoribosyltransferase regulatory subu | 98.25 | |
| cd00779 | 255 | ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla | 98.23 | |
| PRK12420 | 423 | histidyl-tRNA synthetase; Provisional | 98.23 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 98.2 | |
| cd00778 | 261 | ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) | 98.15 | |
| COG0016 | 335 | PheS Phenylalanyl-tRNA synthetase alpha subunit [T | 98.14 | |
| cd04316 | 108 | ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, a | 98.13 | |
| PRK09194 | 565 | prolyl-tRNA synthetase; Provisional | 98.13 | |
| cd00771 | 298 | ThrRS_core Threonyl-tRNA synthetase (ThrRS) class | 98.12 | |
| TIGR00409 | 568 | proS_fam_II prolyl-tRNA synthetase, family II. Pro | 98.05 | |
| PRK12295 | 373 | hisZ ATP phosphoribosyltransferase regulatory subu | 98.05 | |
| PLN02788 | 402 | phenylalanine-tRNA synthetase | 98.0 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 97.97 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 97.95 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 97.94 | |
| PRK14799 | 545 | thrS threonyl-tRNA synthetase; Provisional | 97.94 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 97.93 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 97.85 | |
| PRK08661 | 477 | prolyl-tRNA synthetase; Provisional | 97.78 | |
| TIGR00408 | 472 | proS_fam_I prolyl-tRNA synthetase, family I. Proly | 97.77 | |
| KOG1936|consensus | 518 | 97.76 | ||
| TIGR00414 | 418 | serS seryl-tRNA synthetase. This model represents | 97.74 | |
| PRK12325 | 439 | prolyl-tRNA synthetase; Provisional | 97.71 | |
| PRK05431 | 425 | seryl-tRNA synthetase; Provisional | 97.66 | |
| PRK03991 | 613 | threonyl-tRNA synthetase; Validated | 97.65 | |
| KOG2784|consensus | 483 | 97.63 | ||
| cd00770 | 297 | SerRS_core Seryl-tRNA synthetase (SerRS) class II | 97.62 | |
| PRK12294 | 272 | hisZ ATP phosphoribosyltransferase regulatory subu | 97.36 | |
| cd04489 | 78 | ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol | 97.35 | |
| cd04321 | 86 | ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, a | 97.29 | |
| PLN02837 | 614 | threonine-tRNA ligase | 97.27 | |
| cd04100 | 85 | Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, ant | 97.26 | |
| PLN02678 | 448 | seryl-tRNA synthetase | 97.24 | |
| COG0442 | 500 | ProS Prolyl-tRNA synthetase [Translation, ribosoma | 97.06 | |
| PRK04173 | 456 | glycyl-tRNA synthetase; Provisional | 97.04 | |
| PLN02320 | 502 | seryl-tRNA synthetase | 96.79 | |
| cd04323 | 84 | AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, a | 96.77 | |
| cd04487 | 73 | RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB f | 96.72 | |
| TIGR00470 | 533 | sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam | 96.69 | |
| cd04318 | 82 | EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticod | 96.69 | |
| TIGR00415 | 520 | serS_MJ seryl-tRNA synthetase, Methanococcus janna | 96.46 | |
| cd04485 | 84 | DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp | 96.43 | |
| COG3705 | 390 | HisZ ATP phosphoribosyltransferase involved in his | 96.3 | |
| cd04478 | 95 | RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor | 96.28 | |
| PF13742 | 99 | tRNA_anti_2: OB-fold nucleic acid binding domain | 96.27 | |
| COG0172 | 429 | SerS Seryl-tRNA synthetase [Translation, ribosomal | 96.08 | |
| cd03524 | 75 | RPA2_OBF_family RPA2_OBF_family: A family of oligo | 96.01 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 95.98 | |
| cd04492 | 83 | YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol | 95.86 | |
| PRK09616 | 552 | pheT phenylalanyl-tRNA synthetase subunit beta; Re | 95.84 | |
| cd04482 | 91 | RPA2_OBF_like RPA2_OBF_like: A subgroup of unchara | 95.84 | |
| PRK00960 | 517 | seryl-tRNA synthetase; Provisional | 95.73 | |
| PRK07373 | 449 | DNA polymerase III subunit alpha; Reviewed | 95.61 | |
| KOG2324|consensus | 457 | 95.52 | ||
| TIGR00469 | 460 | pheS_mito phenylalanyl-tRNA synthetase, mitochondr | 95.48 | |
| TIGR00389 | 551 | glyS_dimeric glycyl-tRNA synthetase, dimeric type. | 95.23 | |
| cd04483 | 92 | hOBFC1_like hOBFC1_like: A subfamily of OB folds s | 95.23 | |
| cd04490 | 79 | PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds | 95.15 | |
| PRK06826 | 1151 | dnaE DNA polymerase III DnaE; Reviewed | 94.93 | |
| PF10451 | 256 | Stn1: Telomere regulation protein Stn1; InterPro: | 94.72 | |
| PRK09537 | 417 | pylS pyrolysyl-tRNA synthetase; Reviewed | 94.67 | |
| PF01336 | 75 | tRNA_anti-codon: OB-fold nucleic acid binding doma | 94.51 | |
| PF04076 | 103 | BOF: Bacterial OB fold (BOF) protein; InterPro: IP | 94.5 | |
| PRK05672 | 1046 | dnaE2 error-prone DNA polymerase; Validated | 94.31 | |
| PRK07374 | 1170 | dnaE DNA polymerase III subunit alpha; Validated | 94.14 | |
| COG0423 | 558 | GRS1 Glycyl-tRNA synthetase (class II) [Translatio | 94.09 | |
| PRK06920 | 1107 | dnaE DNA polymerase III DnaE; Reviewed | 94.07 | |
| PRK05673 | 1135 | dnaE DNA polymerase III subunit alpha; Validated | 93.89 | |
| cd00769 | 198 | PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR | 93.04 | |
| PRK07279 | 1034 | dnaE DNA polymerase III DnaE; Reviewed | 92.82 | |
| PRK14894 | 539 | glycyl-tRNA synthetase; Provisional | 92.59 | |
| TIGR00156 | 126 | conserved hypothetical protein TIGR00156. As of th | 92.58 | |
| COG3111 | 128 | Periplasmic protein with OB-fold [Function unknown | 92.52 | |
| cd04488 | 75 | RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f | 92.29 | |
| PRK10053 | 130 | hypothetical protein; Provisional | 92.23 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 92.01 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 91.9 | |
| KOG1035|consensus | 1351 | 91.25 | ||
| cd04484 | 82 | polC_OBF polC_OBF: A subfamily of OB folds corresp | 91.03 | |
| COG1107 | 715 | Archaea-specific RecJ-like exonuclease, contains D | 90.1 | |
| cd04474 | 104 | RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor | 89.72 | |
| PRK00286 | 438 | xseA exodeoxyribonuclease VII large subunit; Revie | 89.54 | |
| PF12869 | 144 | tRNA_anti-like: tRNA_anti-like; InterPro: IPR02442 | 88.97 | |
| PRK15491 | 374 | replication factor A; Provisional | 88.76 | |
| cd04479 | 101 | RPA3 RPA3: A subfamily of OB folds similar to huma | 88.38 | |
| PRK13480 | 314 | 3'-5' exoribonuclease YhaM; Provisional | 88.33 | |
| COG5235 | 258 | RFA2 Single-stranded DNA-binding replication prote | 88.3 | |
| PRK14699 | 484 | replication factor A; Provisional | 87.59 | |
| COG1570 | 440 | XseA Exonuclease VII, large subunit [DNA replicati | 87.42 | |
| COG4085 | 204 | Predicted RNA-binding protein, contains TRAM domai | 87.1 | |
| KOG2509|consensus | 455 | 86.89 | ||
| TIGR00237 | 432 | xseA exodeoxyribonuclease VII, large subunit. This | 85.6 | |
| PRK06461 | 129 | single-stranded DNA-binding protein; Reviewed | 85.18 | |
| cd04491 | 82 | SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil | 84.43 | |
| TIGR00471 | 551 | pheT_arch phenylalanyl-tRNA synthetase, beta subun | 84.03 | |
| PRK12366 | 637 | replication factor A; Reviewed | 83.04 | |
| PRK07459 | 121 | single-stranded DNA-binding protein; Provisional | 82.7 | |
| PRK04036 | 504 | DNA polymerase II small subunit; Validated | 80.06 | |
| PRK07211 | 485 | replication factor A; Reviewed | 80.01 |
| >KOG1885|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-86 Score=676.92 Aligned_cols=359 Identities=64% Similarity=1.116 Sum_probs=337.8
Q ss_pred ccccCChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecCCCceEEEE
Q psy11418 34 YTQQCLTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYD 113 (553)
Q Consensus 34 ~~~~~~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~g~kl~Fi~ 113 (553)
.+++.|++++++.|.+.+++|+..|.+|||++|.+++|+.+|.++|.++..+++..+..|+|+|||+++|.+|+||+|+|
T Consensus 48 ~e~~~d~~qy~~~R~r~i~~l~~s~~~Pyphkf~vs~si~~fieky~~l~~ge~~~n~~~svaGRI~s~R~sGsKL~Fyd 127 (560)
T KOG1885|consen 48 SEETSDPEQYFKIRSRAIEELRASGLNPYPHKFHVSISIPDFIEKYLHLATGEHLDNEIVSVAGRIHSKRESGSKLVFYD 127 (560)
T ss_pred ccccCCHHHHHHHHHHHHHHHhhcCCCCCcchhhccccHHHHHHHhcCcccccccccceeeeeeeEeeeeccCCceEEEE
Confidence 45566999999999999999999999999999999999999999999988888888889999999999999999999999
Q ss_pred EEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcchh
Q psy11418 114 LRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETR 193 (553)
Q Consensus 114 l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r 193 (553)
|++++.+||||++.+...+++.|....+.|++||+|+|.|.+++|++||+||.+.++.+|+||++++|..++||+|.|+|
T Consensus 128 l~~~g~klQvm~~~~~~~~~~~F~~~~~~lkrGDiig~~G~pgrt~~gELSi~~~~~~lLspcLh~lP~~~~gLkD~EtR 207 (560)
T KOG1885|consen 128 LHGDGVKLQVMANAKKITSEEDFEQLHKFLKRGDIIGVSGYPGRTKSGELSIIPNEIILLSPCLHMLPHEHFGLKDKETR 207 (560)
T ss_pred EecCCeEEEEEEehhhcCCHHHHHHHHhhhhccCEEeeecCCCcCCCceEEEeecchheecchhccCChhhcCCCcHHHH
Confidence 99999999999999886678889999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHH
Q psy11418 194 FRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKM 273 (553)
Q Consensus 194 ~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~ 273 (553)
||+|||||+.|+.++.+|++|++|+..||.||+++||+||+||||+..+|||+|+||+|+||.+++++|||+|||||||+
T Consensus 208 yrqRylDlilN~~~r~~f~~RakII~~iRkfld~rgFlEVETPmmn~iaGGA~AkPFIT~hndldm~LylRiAPEL~lK~ 287 (560)
T KOG1885|consen 208 YRKRYLDLILNPEVRDRFRIRAKIISYIRKFLDSRGFLEVETPMMNMIAGGATAKPFITHHNDLDMDLYLRIAPELYLKM 287 (560)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhcCceEecchhhccccCccccCceeecccccCcceeeeechHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcccccCCCcccccccccccChHHHHHh
Q psy11418 274 LVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDRNRPCVMANARMYQSEEEFASD 353 (553)
Q Consensus 274 l~~~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~~~~e~~~~~ 353 (553)
|+|||++||||||+.|||||+|.+||||||.||+||||+||+|+|+++|+|++.+
T Consensus 288 LvVGGldrVYEIGr~FRNEGIDlTHNPEFTTcEfY~AYady~dlm~~TE~l~s~m------------------------- 342 (560)
T KOG1885|consen 288 LVVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYEDLMDMTEELLSGM------------------------- 342 (560)
T ss_pred HHhccHHHHHHHHHHhhhcCcccccCCCcchHHHHHHHhhHHHHHHHHHHHHHHH-------------------------
Confidence 9999999999999999999999999999999999999999999999999999988
Q ss_pred hcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCChhhhccccceeeecChHHHHHHHHHHHHHH
Q psy11418 354 LVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIA 433 (553)
Q Consensus 354 ~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~ 433 (553)
T Consensus 343 -------------------------------------------------------------------------------- 342 (560)
T KOG1885|consen 343 -------------------------------------------------------------------------------- 342 (560)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhHHHHHhccCcceEecCCCCCCCCCcccCCCC
Q psy11418 434 YVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKSTHGSYKVTYHPDGPESGSPVEIDFTP 513 (553)
Q Consensus 434 ~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel~~k~l~~~~~~~~~~e~~~~~~~~~~~~~~ 513 (553)
.+.+.|+|++.|+|+..... ...++|.+
T Consensus 343 ---------------------------------------------------v~~i~G~~~i~y~p~~~~~~-~~eldf~~ 370 (560)
T KOG1885|consen 343 ---------------------------------------------------VKNITGSYKITYHPNGPEEP-ELELDFTR 370 (560)
T ss_pred ---------------------------------------------------HHhhcCceeEeecCCCCCCC-ceeeeccC
Confidence 24566778888887655422 56789999
Q ss_pred CceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHhC
Q psy11418 514 PFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSD 549 (553)
Q Consensus 514 ~f~rit~~eA~~~~~g~~~~~~~~~~~~~~~~~~~~ 549 (553)
||+|++|.+.+++.+|++++.++.+++++..+++.+
T Consensus 371 pfrri~mi~~L~k~lgi~l~~~~~l~~~e~~~~L~~ 406 (560)
T KOG1885|consen 371 PFRRIEMIEELEKELGIKLPPGSTLHTEETRELLKS 406 (560)
T ss_pred CeeeeeHHHHHHHHhCCCCCCccccCchhhHHHHHH
Confidence 999999999999999999998777888877666543
|
|
| >COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-81 Score=654.30 Aligned_cols=289 Identities=52% Similarity=0.836 Sum_probs=274.9
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCccccc-CCcEEEEEEEEEeeecCCCceEEEEEEe
Q psy11418 38 CLTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVL-ENVTLSVAGRVHAIRESGTKLMFYDLRG 116 (553)
Q Consensus 38 ~~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~v~Gri~~~R~~g~kl~Fi~l~d 116 (553)
...+++.+.|++|+++|+++|++|||+.|.+++++.+++++|.+....+.. ...+|+|+|||+++|.+| |++|++|.|
T Consensus 8 ~~~~~~~~~R~~kl~~lr~~g~~~yp~~~~~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~G-K~~F~~i~d 86 (502)
T COG1190 8 RDLNDQIAVRREKLAALREQGIDPYPNDFERTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMG-KASFADLQD 86 (502)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCcCcccccHHHHHHHHhccchhhhhhccceeEEecceeeecccC-ceeEEEEec
Confidence 366788999999999999999999999999999999999999875533322 233599999999999999 999999999
Q ss_pred CCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhcc
Q psy11418 117 EGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQ 196 (553)
Q Consensus 117 ~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~ 196 (553)
++++||++++++.. +++.|..+.+.+++||+|+|+|.+++|++||++|.|+++++|+||++|||++|||++|+|+|||+
T Consensus 87 ~~gkiQ~yi~k~~~-~~~~~~~~~~~~dlGDiigv~G~~~~T~~GelSv~v~~~~lLsKsL~pLPeK~hgL~D~E~RyR~ 165 (502)
T COG1190 87 GSGKIQLYVNKDEV-GEEVFEALFKKLDLGDIIGVEGPLFKTKTGELSVSVEELRLLSKSLRPLPEKFHGLTDKEIRYRQ 165 (502)
T ss_pred CCceEEEEEecccc-chhhHHHHHhccccCCEEeeeeeeeecCCCceEEEEEEEeeecccCCCCChhhcCCccHHHHHHH
Confidence 99999999999875 56778778899999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHH
Q psy11418 197 RYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVV 276 (553)
Q Consensus 197 R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~ 276 (553)
||+||++|++.+.+|..||+|+++||+||+++||+||+||+|++++|||+|+||.||||+++.++|||||||||||+|+|
T Consensus 166 RylDLi~N~e~r~~f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF~ThhNald~dlyLRIApELyLKRliV 245 (502)
T COG1190 166 RYLDLIVNPESRQTFIKRSKIIRAIREFLDDRGFLEVETPMLQPIPGGAAARPFITHHNALDMDLYLRIAPELYLKRLIV 245 (502)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCeEeccccccccCCCcccccceeeecccCCceEEeeccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcc
Q psy11418 277 GGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGR 328 (553)
Q Consensus 277 ~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~ 328 (553)
||++||||||++||||++|++|||||||||+|+||+||+|+|+++|+|++++
T Consensus 246 GG~erVfEIgr~FRNEGid~tHNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~ 297 (502)
T COG1190 246 GGFERVFEIGRNFRNEGIDTTHNPEFTMLEFYQAYADYEDLMDLTEELIKEL 297 (502)
T ss_pred cCchhheeeccccccCCCccccCcchhhHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999
|
|
| >PLN02502 lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-76 Score=641.52 Aligned_cols=290 Identities=59% Similarity=0.981 Sum_probs=274.9
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecCCCceEEEEEEeC
Q psy11418 38 CLTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGE 117 (553)
Q Consensus 38 ~~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~ 117 (553)
.++++++++|++|+++|++.|++|||++|.+++++++++++|.++..++...|++|+|+|||+++|.+| |++|++|+|+
T Consensus 56 ~~~~~~~~~r~~~~~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~G-k~~F~~LrD~ 134 (553)
T PLN02502 56 MDPTQYRANRLKKVEALRAKGVEPYPYKFDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFG-KLAFYDLRDD 134 (553)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccHHHHHHHhhccccccccCCCEEEEEEEEEEEecCC-CeEEEEEecC
Confidence 467889999999999999999999999999999999999999988767667788999999999999999 9999999999
Q ss_pred CEEEEEEEecccCCC-HHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhcc
Q psy11418 118 GLKIQVMANARMYQS-EEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQ 196 (553)
Q Consensus 118 ~~~iQvv~~~~~~~~-~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~ 196 (553)
++.||||++++.... .+.|..+.+.|++||+|+|+|++.+|++|++||.+++|+||++|+.|+|.++++++|.++||++
T Consensus 135 ~g~iQv~~~~~~~~~~~~~~~~~~~~l~~gdiV~V~G~~~~t~~gelel~~~~i~vLs~~l~plP~k~~~~~d~e~r~r~ 214 (553)
T PLN02502 135 GGKIQLYADKKRLDLDEEEFEKLHSLVDRGDIVGVTGTPGKTKKGELSIFPTSFEVLTKCLLMLPDKYHGLTDQETRYRQ 214 (553)
T ss_pred CccEEEEEECccccchhHHHHHHHhCCCCCcEEEEEEEEEecCCCCEEEEEeEEEEEeccCCCCCcccccccchhhhccc
Confidence 999999998765421 1347666667999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHH
Q psy11418 197 RYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVV 276 (553)
Q Consensus 197 R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~ 276 (553)
|||||++|+.++++|++||.|+++||+||.++||+||+||+|++++|||+++||.|++|++++++||++|||||||+|++
T Consensus 215 RyLdl~~n~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~gGA~a~pF~t~~n~~~~~~yL~~Spel~lK~L~v 294 (553)
T PLN02502 215 RYLDLIANPEVRDIFRTRAKIISYIRRFLDDRGFLEVETPMLNMIAGGAAARPFVTHHNDLNMDLYLRIATELHLKRLVV 294 (553)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeeeccCCCccccceeeecccCCcceeeecCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcc
Q psy11418 277 GGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGR 328 (553)
Q Consensus 277 ~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~ 328 (553)
+|++||||||||||||+++++|||||||||||++|+|++|||+++|+||+++
T Consensus 295 ~g~~rVfeIg~~FRnE~~~~rH~pEFtmlE~y~a~~d~~dlm~~~E~li~~i 346 (553)
T PLN02502 295 GGFERVYEIGRQFRNEGISTRHNPEFTTCEFYQAYADYNDMMELTEEMVSGM 346 (553)
T ss_pred hccCCEEEEcCeeeCCCCCCccccceeehhhhhhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988
|
|
| >TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-74 Score=628.75 Aligned_cols=289 Identities=50% Similarity=0.842 Sum_probs=269.3
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCcccc-cCCcEEEEEEEEEeeecCCCceEEEEEEeC
Q psy11418 39 LTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQV-LENVTLSVAGRVHAIRESGTKLMFYDLRGE 117 (553)
Q Consensus 39 ~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~ 117 (553)
|.+++.+.|++|+++|++.|++|||++|.+++++++++++|+++..++. ..+++|+|+|||+++|.+| |++|++|+|+
T Consensus 1 ~~~~~~~~r~~k~~~l~~~~~~~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~g-k~~F~~l~D~ 79 (496)
T TIGR00499 1 DLNDQLQTRREKLARLRQTGNNPYLNKFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMG-KATFITLQDE 79 (496)
T ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCC-CeEEEEEEcC
Confidence 3567899999999999999999999999999999999999987665442 3477899999999999998 9999999999
Q ss_pred CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhccc
Q psy11418 118 GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQR 197 (553)
Q Consensus 118 ~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R 197 (553)
++.||+|++++.. +++.+....+.|++||+|+|+|++.+|++|++||.+++|++||+|+.|+|.++++++|.++||++|
T Consensus 80 ~g~iQ~~~~~~~~-~~~~~~~~~~~l~~gd~V~v~G~~~~t~~gelel~~~~i~ilsk~~~plP~k~~~~~d~e~r~r~R 158 (496)
T TIGR00499 80 SGQIQLYVNKDDL-PEDFYEFDEYLLDLGDIIGVTGYPFKTKTGELSVHVTELQILTKALRPLPDKFHGLTDQETRYRQR 158 (496)
T ss_pred CccEEEEEECCcC-cHHHHHHHHhcCCCCCEEEEEEEEEECCCCcEEEEeeEEEEEecCCCCCCccccccCChhhhhhhh
Confidence 9999999988754 344343223358999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHc
Q psy11418 198 YLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG 277 (553)
Q Consensus 198 ~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~ 277 (553)
||||++|+.++++|++||.|++++|+||.++||+||+||+|++.+|||+|+||.|++|+++.++|||+|||||||+|++|
T Consensus 159 ~Ldl~~n~~~~~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~gga~a~pF~t~~~~~~~~~yLriSpELylKrlivg 238 (496)
T TIGR00499 159 YLDLIVNPDSRQTFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIPGGANARPFITHHNALDMDLYLRIAPELYLKRLIVG 238 (496)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCCCCccceeEEeecccCCCceEEecCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhccc
Q psy11418 278 GLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRK 329 (553)
Q Consensus 278 g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~ 329 (553)
|++||||||||||||++++||||||||||||++|+||+|||+++|+||++++
T Consensus 239 G~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~ 290 (496)
T TIGR00499 239 GFEKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLA 290 (496)
T ss_pred CCCceEEEecceecCCCCCcccchhheeehhhhcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999883
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms. |
| >PRK12445 lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-74 Score=627.35 Aligned_cols=287 Identities=45% Similarity=0.770 Sum_probs=269.7
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCcccc-cCCcEEEEEEEEEeeecCCCceEEEEEEeC
Q psy11418 39 LTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQV-LENVTLSVAGRVHAIRESGTKLMFYDLRGE 117 (553)
Q Consensus 39 ~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~ 117 (553)
+.+++.+.|++|+++|++.|+ |||++|.+++++++++++|+++..++. ..+++|+|+|||+++|.+| |++|++|+|+
T Consensus 14 ~~~~~~~~r~~k~~~l~~~g~-py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G-k~~F~~lrD~ 91 (505)
T PRK12445 14 DFNDELRNRREKLAALRQQGV-AFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG-KASFVTLQDV 91 (505)
T ss_pred CccHHHHHHHHHHHHHHHhCC-CCCCCCcCccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCC-CcEEEEEEeC
Confidence 467889999999999999999 999999999999999999987654332 3467899999999999999 8999999999
Q ss_pred CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhccc
Q psy11418 118 GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQR 197 (553)
Q Consensus 118 ~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R 197 (553)
++.||||++++.. +++.|....+.|++||+|+|+|++.+|++|++||.++++++||+|+.|+|.++++++|.++|||+|
T Consensus 92 ~g~iQ~~~~~~~~-~~~~~~~~~~~l~~Gd~V~v~G~~~~t~~gelel~~~~~~llsk~~~plP~~~~~~~d~e~r~r~R 170 (505)
T PRK12445 92 GGRIQLYVARDSL-PEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQR 170 (505)
T ss_pred CccEEEEEECCcc-chhhHHHHHhcCCCCCEEEEEEEEEecCCCcEEEEEeEEEEEecCCCCCCcccccccChhhhhhhh
Confidence 9999999987654 344554456789999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHc
Q psy11418 198 YLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG 277 (553)
Q Consensus 198 ~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~ 277 (553)
||||++|+..+++|++||+|++++|+||.++||+||+||+|++++|||+++||.|++|+++.++||++|||||||+|++|
T Consensus 171 yldl~~n~~~r~~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~~gGa~a~pF~t~~~~~~~~~yL~~SpELylKrlivg 250 (505)
T PRK12445 171 YLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVG 250 (505)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeeEecCCCCcccceecccccCCcceeeecCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcc
Q psy11418 278 GLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGR 328 (553)
Q Consensus 278 g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~ 328 (553)
|++||||||||||||+++++|||||||||||++|+|++|||+++|+||+++
T Consensus 251 G~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~l 301 (505)
T PRK12445 251 GFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTL 301 (505)
T ss_pred cCCcEEEEehhccCCCCCCCcCcccceeeeeeecCCHHHHHHHHHHHHHHH
Confidence 999999999999999998899999999999999999999999999999988
|
|
| >PTZ00417 lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-74 Score=630.30 Aligned_cols=294 Identities=55% Similarity=0.971 Sum_probs=274.7
Q ss_pred ccccCChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecCCCceEEEE
Q psy11418 34 YTQQCLTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYD 113 (553)
Q Consensus 34 ~~~~~~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~g~kl~Fi~ 113 (553)
.+++.++++++..|++|+++|++.|++|||++|.+++++++++++|+++..++...+..|+|+|||+++|.+|+|++|++
T Consensus 76 ~~~~~~~~~~~~~r~~k~~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k~~F~~ 155 (585)
T PTZ00417 76 EEAEVDPRLYYENRSKFIQEQKAKGINPYPHKFERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQKLRFFD 155 (585)
T ss_pred ccccCChHHHHHHHHHHHHHHHhcCCCCCCCCCcCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCCCEEEE
Confidence 44555889999999999999999999999999999999999999998776555445567999999999999997799999
Q ss_pred EEeCCEEEEEEEecccCC-CHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcch
Q psy11418 114 LRGEGLKIQVMANARMYQ-SEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKET 192 (553)
Q Consensus 114 l~d~~~~iQvv~~~~~~~-~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~ 192 (553)
|+|+++.||||++++... .++.|....+.|++||+|+|+|.+.+|++||++|.+++|++|++|+.|+|.++ |++|.++
T Consensus 156 L~d~~g~iQv~~~~~~~~~~~~~~~~~~~~l~~Gd~V~V~G~~~~t~~gel~i~~~~i~llsk~l~~lP~~~-g~~d~e~ 234 (585)
T PTZ00417 156 LVGDGAKIQVLANFAFHDHTKSNFAECYDKIRRGDIVGIVGFPGKSKKGELSIFPKETIILSPCLHMLPMKY-GLKDTEI 234 (585)
T ss_pred EEeCCeeEEEEEECCccCCCHHHHHHHHhcCCCCCEEEEEeEEcCCCCceEEEEEEEEEEEecCCCCCCccc-CCCCccc
Confidence 999999999999976431 24566555678999999999999999999999999999999999999999987 8999999
Q ss_pred hhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHH
Q psy11418 193 RFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLK 272 (553)
Q Consensus 193 r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk 272 (553)
||++|||||++|+..+++|++||+|+++||+||+++||+||+||+|++++|||+++||.|++|++++++|||+|||||||
T Consensus 235 r~r~RyLdL~~n~~~~~ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~GGA~a~PF~T~~n~~d~~lYLriSpEL~lK 314 (585)
T PTZ00417 235 RYRQRYLDLMINESTRSTFITRTKIINYLRNFLNDRGFIEVETPTMNLVAGGANARPFITHHNDLDLDLYLRIATELPLK 314 (585)
T ss_pred ccccchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccCCcccceeEEecccCCCcceEEeecHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcc
Q psy11418 273 MLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGR 328 (553)
Q Consensus 273 ~l~~~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~ 328 (553)
+|++||++||||||||||||+++++|||||||||||++|+||+|||+++|+||+++
T Consensus 315 rLlvgG~~rVfeIgp~FRnE~~~~rHnpEFTmlE~y~ay~dy~dlM~l~E~Li~~v 370 (585)
T PTZ00417 315 MLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYADFYDLIKWSEDFFSQL 370 (585)
T ss_pred HHHHhCCCCEEEEcccccCCCCCCCccceeeeeeeeeecCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988
|
|
| >PRK00484 lysS lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-72 Score=610.13 Aligned_cols=286 Identities=51% Similarity=0.826 Sum_probs=268.2
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCccccc-CCcEEEEEEEEEeeecCCCceEEEEEEeCCE
Q psy11418 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVL-ENVTLSVAGRVHAIRESGTKLMFYDLRGEGL 119 (553)
Q Consensus 41 ~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~ 119 (553)
+++.+.|++|+++|++.|++|||++|.+++++++++++|.++..++.. .+++|+|+|||+++|.+| |++|++|+|+++
T Consensus 4 ~~~~~~r~~k~~~~~~~g~~~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g-~~~Fi~lrD~~g 82 (491)
T PRK00484 4 NEQIAVRREKLAELREQGIDPYPNKFERTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMG-KASFATLQDGSG 82 (491)
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCCCCcCccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCC-ceEEEEEEcCCc
Confidence 568999999999999999999999999999999999999876554432 246799999999999999 999999999999
Q ss_pred EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhcccch
Q psy11418 120 KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYL 199 (553)
Q Consensus 120 ~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R~l 199 (553)
.||||++++.. +++.| +..+.|+.||+|+|+|++.++++|++||.+++++||++|+.|+|.+++++.+.++|+++|||
T Consensus 83 ~iQ~v~~~~~~-~~~~~-~~~~~l~~g~~v~v~G~v~~t~~ge~el~~~~~~vls~~~~plP~~~~~~~~~~~r~r~R~l 160 (491)
T PRK00484 83 RIQLYVSKDDV-GEEAL-EAFKKLDLGDIIGVEGTLFKTKTGELSVKATELTLLTKSLRPLPDKFHGLTDVETRYRQRYV 160 (491)
T ss_pred cEEEEEECCcC-CHHHH-HHHhcCCCCCEEEEEEEEEEcCCCcEEEEEeEEEEEeccCCCCCcccccccchhhhccceee
Confidence 99999987653 34445 34556999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccC
Q psy11418 200 DLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL 279 (553)
Q Consensus 200 dl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~ 279 (553)
|||+|+.++++|++||+|++++|+||.++||+||+||+|++++|||+|+||.|++++++.++||++|||||||+|+++|+
T Consensus 161 Dl~~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~l~v~g~ 240 (491)
T PRK00484 161 DLIVNPESRETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIAGGAAARPFITHHNALDIDLYLRIAPELYLKRLIVGGF 240 (491)
T ss_pred ehhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCceeccCCCccceeeeeccccCCCceEeccCHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhccc
Q psy11418 280 DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRK 329 (553)
Q Consensus 280 ~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~ 329 (553)
+|||+||||||||+++++|||||||||||++|+|++|+|+++|++|++++
T Consensus 241 ~rVfei~~~FR~E~~~~rH~pEFt~lE~e~a~~d~~d~m~~~E~li~~i~ 290 (491)
T PRK00484 241 ERVYEIGRNFRNEGIDTRHNPEFTMLEFYQAYADYNDMMDLTEELIRHLA 290 (491)
T ss_pred CcEEEEecceecCCCCCCcCCceEEEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999983
|
|
| >PRK02983 lysS lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-69 Score=626.45 Aligned_cols=280 Identities=43% Similarity=0.707 Sum_probs=265.4
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecCCCceEEEEEEeCC
Q psy11418 39 LTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEG 118 (553)
Q Consensus 39 ~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~ 118 (553)
..+++.++|++|+++|++.|++|||++|+++++++++.+. ..|++|+|+|||+++|.+| |++|++|+|++
T Consensus 609 ~~~~~~~~r~~k~~~l~~~g~~pyp~~~~~~~~~~~~~~~---------~~~~~V~v~Grv~~~R~~G-~~~F~~lrD~~ 678 (1094)
T PRK02983 609 RLPEQVRVRLAKLEALRAAGVDPYPVGVPPTHTVAEALDA---------PTGEEVSVSGRVLRIRDYG-GVLFADLRDWS 678 (1094)
T ss_pred CccHHHHHHHHHHHHHHHcCCCCCCCCCcCccCHHHHHHh---------cCCCEEEEEEEEEEEeeCC-CeEEEEEEeCC
Confidence 4567899999999999999999999999999999998764 2456799999999999999 99999999999
Q ss_pred EEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhcccc
Q psy11418 119 LKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRY 198 (553)
Q Consensus 119 ~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R~ 198 (553)
+.||+|++++.. +++.|..+.+.|++||+|+|+|++.+|++|++||.+++|+++++|+.|+|.++++++|+++|+|+||
T Consensus 679 g~iQ~v~~~~~~-~~~~~~~~~~~l~~gd~V~v~G~v~~t~~ge~ei~~~~i~ll~k~~~plP~k~~~~~d~e~R~r~R~ 757 (1094)
T PRK02983 679 GELQVLLDASRL-EQGSLADFRAAVDLGDLVEVTGTMGTSRNGTLSLLVTSWRLAGKCLRPLPDKWKGLTDPEARVRQRY 757 (1094)
T ss_pred eeEEEEEECCcc-chhhHHHHHhcCCCCCEEEEEEEEEEcCCCCEEEEEeEEEEEeccCcCCCCccccCCChhhcchhhh
Confidence 999999998764 4455655567799999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHcc
Q psy11418 199 LDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG 278 (553)
Q Consensus 199 ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g 278 (553)
|||++|+.++++|++||+|+++||+||.++||+||+||+|++++||++++||.|++|++|+++|||||||||||+|+++|
T Consensus 758 lDL~~n~~~~~~~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~gGa~a~pF~t~~~~~~~~~yLriSPELylKrLivgG 837 (1094)
T PRK02983 758 LDLAVNPEARDLLRARSAVVRAVRETLVARGFLEVETPILQQVHGGANARPFVTHINAYDMDLYLRIAPELYLKRLCVGG 837 (1094)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCEeeccCCCcccceeEeeecCCCccchhhcChHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhccc
Q psy11418 279 LDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRK 329 (553)
Q Consensus 279 ~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~ 329 (553)
++||||||||||||+++++|||||||||+|++|+||+|||+++|+||++++
T Consensus 838 ~erVFEIg~~FRnE~~~~rHnpEFTmLE~y~a~~dy~d~m~l~E~li~~i~ 888 (1094)
T PRK02983 838 VERVFELGRNFRNEGVDATHNPEFTLLEAYQAHADYDTMRDLTRELIQNAA 888 (1094)
T ss_pred cCceEEEcceecCCCCCCCccccccchhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999984
|
|
| >PTZ00385 lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-66 Score=565.07 Aligned_cols=265 Identities=38% Similarity=0.715 Sum_probs=242.7
Q ss_pred CCccccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccC
Q psy11418 64 HKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKI 143 (553)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l 143 (553)
++|.+++++++++++|+++..++...+++|+|+|||+++|.+| |++|++|||++|.||||++++...+++.|....+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~G-k~~F~~LrD~~G~IQvv~~~~~~~~~~~~~~~~~~l 159 (659)
T PTZ00385 81 SSFRGITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIG-KIIFVTIRSNGNELQVVGQVGEHFTREDLKKLKVSL 159 (659)
T ss_pred ccCcccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccC-CeEEEEEEECCceEEEEEECCccCCHHHHHHHHhCC
Confidence 4789999999999999887655444456799999999999999 899999999999999999987532444565555689
Q ss_pred CCCcEEEEEeecccccCCceeEeeeeEEEeccCC--CCC--CC--CCCCCCCcchhhcccchhhhccHHHHHHHHHHHHH
Q psy11418 144 KRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCL--HML--PH--MHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQI 217 (553)
Q Consensus 144 ~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~--~~l--P~--~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i 217 (553)
++||+|+|+|++.++++||+||.++++++||+++ +++ |. +++++.|.++||++||||||+|+.++++|++||+|
T Consensus 160 ~~gdiV~V~G~v~~t~~GeleI~~~~i~lLska~~~~~~~~p~~~k~~~~~d~e~R~r~RyLDL~~n~~~~~ifr~Rs~I 239 (659)
T PTZ00385 160 RVGDIIGADGVPCRMQRGELSVAASRMLILSPYVCTDQVVCPNLRGFTVLQDNDVKYRYRFTDMMTNPCVIETIKKRHVM 239 (659)
T ss_pred CCCCEEEEEEEEEecCCceEEEEeeEEEEechhhhccccCCCCCccccccCChhhhcccceeeeecCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999954 332 33 67899999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCCC
Q psy11418 218 IAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLT 297 (553)
Q Consensus 218 ~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~~ 297 (553)
+++||+||.++||+||+||+|++..||++|+||.|++|+++.++||++|||||||+|+++|++||||||||||||+++++
T Consensus 240 ~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~t~~n~~~~~~yL~~SPELylKrLivgG~erVyeIg~~FRnE~~~~r 319 (659)
T PTZ00385 240 LQALRDYFNERNFVEVETPVLHTVASGANAKSFVTHHNANAMDLFLRVAPELHLKQCIVGGMERIYEIGKVFRNEDADRS 319 (659)
T ss_pred HHHHHHHHHHCCCEEeeCCEeeccCCCCCccceEeecccCCCCEEecCChHHHHHHHhhcccCCEEEEeceecCCCCCCC
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcceeeeEeccCCHHHHHHHHHHHHhccc
Q psy11418 298 HNPEFTTCEFYMAYADYNDLMHLTEDLISGRK 329 (553)
Q Consensus 298 H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~ 329 (553)
|||||||||||++|+|++|||+++|++|++++
T Consensus 320 H~pEFTmlE~y~a~~d~~d~m~l~E~li~~~~ 351 (659)
T PTZ00385 320 HNPEFTSCEFYAAYHTYEDLMPMTEDIFRQLA 351 (659)
T ss_pred ccccccceeeeeecCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999883
|
|
| >PLN02850 aspartate-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-55 Score=481.79 Aligned_cols=243 Identities=25% Similarity=0.374 Sum_probs=213.9
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecc------cccC
Q psy11418 87 VLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPG------KTKK 160 (553)
Q Consensus 87 ~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~------~t~~ 160 (553)
...|++|+|+|||+++|.+| |++|++|||++++||+|+..+.......+.+++..|++||+|.|+|++. ++.+
T Consensus 78 ~~~g~~V~v~Grv~~~R~~g-k~~Fl~Lrd~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t 156 (530)
T PLN02850 78 ELAGSEVLIRGRVHTIRGKG-KSAFLVLRQSGFTVQCVVFVSEVTVSKGMVKYAKQLSRESVVDVEGVVSVPKKPVKGTT 156 (530)
T ss_pred hhCCCEEEEEEEEEEEccCC-CeEEEEEEeCCcCEEEEEECCccccCHHHHHHHhCCCCCCEEEEEEEEEccCcCCCCCC
Confidence 34688999999999999999 7999999999999999998764212345667788999999999999987 3557
Q ss_pred CceeEeeeeEEEeccCCCCCCCCCCC-------------------CCCcchhhcccchhhhccHHHHHHHHHHHHHHHHH
Q psy11418 161 GELSIIPKKLTLLSPCLHMLPHMHFG-------------------VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYV 221 (553)
Q Consensus 161 ge~~l~~~~i~il~~~~~~lP~~~~~-------------------l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~i 221 (553)
+++||++++|.|+|+|+.++|..... ..+.++|+++|||||| ++.++++|++||.|++++
T Consensus 157 ~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR-~~~~qaifrirs~i~~~~ 235 (530)
T PLN02850 157 QQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLR-TPANQAIFRIQSQVCNLF 235 (530)
T ss_pred ccEEEEEeEEEEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcchhhhhc-CHHHHHHHHHHHHHHHHH
Confidence 89999999999999999899964321 2457899999999998 899999999999999999
Q ss_pred HHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccC
Q psy11418 222 RRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNP 300 (553)
Q Consensus 222 r~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~ 300 (553)
|+||.++||+||+||+|++..+++++.+|.+ +|||.++||++|||||||+++++|++||||||||||||++++ ||+|
T Consensus 236 R~fl~~~gF~EV~TP~L~~~~~egga~~F~v--~yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~s~t~RHl~ 313 (530)
T PLN02850 236 REFLLSKGFVEIHTPKLIAGASEGGSAVFRL--DYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTHRHLC 313 (530)
T ss_pred HHHHHHCCcEEEeCCccccCCCccccceeee--ccCCcceecCCCHHHHHHHHHHhcCCceEEEecccccCCCCCCccch
Confidence 9999999999999999975443334679987 478999999999999999999999999999999999999876 8999
Q ss_pred CcceeeeEeccC-CHHHHHHHHHHHHhcccccCC
Q psy11418 301 EFTTCEFYMAYA-DYNDLMHLTEDLISGRKEDRN 333 (553)
Q Consensus 301 EFt~lE~e~a~~-~~~~~m~~~e~li~~~~~~~~ 333 (553)
|||||||||+|. +|+|+|+++|+||+++++++.
T Consensus 314 EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~ 347 (530)
T PLN02850 314 EFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLN 347 (530)
T ss_pred hhccchhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988 699999999999999976553
|
|
| >TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-55 Score=468.54 Aligned_cols=238 Identities=29% Similarity=0.467 Sum_probs=214.0
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc--CCceeEe
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSII 166 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~--~ge~~l~ 166 (553)
.|++|+|+|||+++|.+| |++|++|+|+++.||++++++.. +++.| +.++.|+.||+|.|+|++.+++ +|++||.
T Consensus 11 ~g~~v~i~G~v~~~R~~g-~~~Fi~lrd~~g~iQ~v~~~~~~-~~~~~-~~~~~l~~~s~v~v~G~v~~~~~~~~~~el~ 87 (428)
T TIGR00458 11 DGQEVTFMGWVHEIRDLG-GLIFVLLRDREGLIQITAPAKKV-SKNLF-KWAKKLNLESVVAVRGIVKIKEKAPGGFEII 87 (428)
T ss_pred CCCEEEEEEEEEEEecCC-CcEEEEEEeCCeeEEEEEECCcC-CHHHH-HHHhCCCCCcEEEEEEEEEecCCCCCcEEEE
Confidence 578899999999999999 79999999999999999987643 34444 5668899999999999998776 5999999
Q ss_pred eeeEEEeccCCCCCCCCCCC--CCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCC
Q psy11418 167 PKKLTLLSPCLHMLPHMHFG--VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGG 244 (553)
Q Consensus 167 ~~~i~il~~~~~~lP~~~~~--l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gg 244 (553)
+++++|||+|..++|.+..+ ..+.++|+++|||||| |+.++++|++||.|++++|+||.++||+||+||+|++++++
T Consensus 88 ~~~i~vl~~~~~~lP~~~~~~~~~~~~~r~~~R~ldlr-~~~~~~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~e 166 (428)
T TIGR00458 88 PTKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLR-RPTVQAIFRIRSGVLESVREFLAEEGFIEVHTPKLVASATE 166 (428)
T ss_pred EeEEEEEecCCCCCCCCccccCCCCHHHHhhhhhhhhC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCceecCCCC
Confidence 99999999999889976433 3467899999999996 99999999999999999999999999999999999866655
Q ss_pred CCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCCHHHHHHHHHH
Q psy11418 245 ATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYADYNDLMHLTED 323 (553)
Q Consensus 245 a~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~~~~~m~~~e~ 323 (553)
+++++|.+ ++|+.++||++|||||||+++++|++|||+||||||||++++ ||||||||||||++|+|++|+|+++|+
T Consensus 167 g~~~~f~v--~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~dlm~~~e~ 244 (428)
T TIGR00458 167 GGTELFPI--TYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEE 244 (428)
T ss_pred CCcceeee--EecCCcEEECcCHHHHHHHHHhcccCcEEEEecccccCCCCCccchheeeEeeeeeccCCHHHHHHHHHH
Confidence 55677865 478999999999999999999999999999999999999997 899999999999999999999999999
Q ss_pred HHhcccccC
Q psy11418 324 LISGRKEDR 332 (553)
Q Consensus 324 li~~~~~~~ 332 (553)
+|+++++.+
T Consensus 245 li~~i~~~~ 253 (428)
T TIGR00458 245 LVVRVFEDV 253 (428)
T ss_pred HHHHHHHHH
Confidence 999996544
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). |
| >PRK05159 aspC aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=468.05 Aligned_cols=235 Identities=32% Similarity=0.556 Sum_probs=211.0
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccC--CceeEe
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK--GELSII 166 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~--ge~~l~ 166 (553)
.|++|+|+|||+++|.+| |++|++|+|+++.||+|++++.. + .+.+.++.|++||+|.|+|++.++++ |++||.
T Consensus 15 ~g~~V~i~GrV~~~R~~g-k~~Fl~LrD~~g~iQ~v~~~~~~--~-~~~~~~~~L~~gs~V~v~G~v~~~~~~~~~~el~ 90 (437)
T PRK05159 15 DGEEVTLAGWVHEIRDLG-GIAFLILRDRSGIIQVVVKKKVD--E-ELFETIKKLKRESVVSVTGTVKANPKAPGGVEVI 90 (437)
T ss_pred CCCEEEEEEEeEeeecCC-CeEEEEEEcCCcEEEEEEeCCcc--H-HHHHHHhCCCCCcEEEEEEEEEcCCCCCCCEEEE
Confidence 578899999999999999 89999999999999999987643 2 33456788999999999999998875 899999
Q ss_pred eeeEEEeccCCCCCCCCCCC--CCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccc--c
Q psy11418 167 PKKLTLLSPCLHMLPHMHFG--VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI--A 242 (553)
Q Consensus 167 ~~~i~il~~~~~~lP~~~~~--l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~--~ 242 (553)
+++|+|||+|..++|....+ ..+.++|+++|||||| |+.++++|++||.|++++|+||.++||+||+||+|+++ +
T Consensus 91 ~~~i~vls~a~~~~P~~~~~~~~~~~~~~~~~r~Ldlr-~~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~e 169 (437)
T PRK05159 91 PEEIEVLNKAEEPLPLDISGKVLAELDTRLDNRFLDLR-RPRVRAIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGTE 169 (437)
T ss_pred EeEEEEEeCCCCCCCCCccccccCCHHHHhhCcceecC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCcccccCCC
Confidence 99999999999889965432 4578999999999995 99999999999999999999999999999999999744 5
Q ss_pred CCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCC-HHHHHHH
Q psy11418 243 GGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYAD-YNDLMHL 320 (553)
Q Consensus 243 gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~-~~~~m~~ 320 (553)
||+ +.|.+ ++||.++||++|||||||+++++|++|||+||||||||++++ ||||||||||||++|+| ++|+|++
T Consensus 170 g~~--~~f~~--~~~~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~lm~~ 245 (437)
T PRK05159 170 GGA--ELFPI--DYFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDDHEDVMDL 245 (437)
T ss_pred CCc--ceEeE--EecCCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCCCCCCcccchhhheeeeeeeecccHHHHHHH
Confidence 554 45654 579999999999999999999999999999999999999997 89999999999999998 9999999
Q ss_pred HHHHHhcccccC
Q psy11418 321 TEDLISGRKEDR 332 (553)
Q Consensus 321 ~e~li~~~~~~~ 332 (553)
+|++|+++++.+
T Consensus 246 ~e~lv~~i~~~~ 257 (437)
T PRK05159 246 LENLLRYMYEDV 257 (437)
T ss_pred HHHHHHHHHHHH
Confidence 999999986543
|
|
| >PTZ00401 aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-55 Score=476.99 Aligned_cols=241 Identities=25% Similarity=0.384 Sum_probs=212.7
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc-------ccCC
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK-------TKKG 161 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~-------t~~g 161 (553)
.|++|+|+|||+++|.+| |++|++|||+++.||+|++.+.. ..+.+.+++..|+.||+|.|+|+|.+ +.+|
T Consensus 77 ~g~~V~v~Grv~~~R~~G-k~~Fl~LRd~~~~iQ~v~~~~~~-~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~~~~ 154 (550)
T PTZ00401 77 VDKTVLIRARVSTTRKKG-KMAFMVLRDGSDSVQAMAAVEGD-VPKEMIDFIGQIPTESIVDVEATVCKVEQPITSTSHS 154 (550)
T ss_pred CCCEEEEEEEEEEEecCC-CeEEEEEEeCCcCEEEEEECCCc-cCHHHHHHHhcCCCCCEEEEEEEEEecCccCCCCCCc
Confidence 678999999999999999 89999999999999999975432 23455677889999999999998875 4578
Q ss_pred ceeEeeeeEEEeccCCCCCCCCCCC---------C-CCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeE
Q psy11418 162 ELSIIPKKLTLLSPCLHMLPHMHFG---------V-KDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFL 231 (553)
Q Consensus 162 e~~l~~~~i~il~~~~~~lP~~~~~---------l-~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~ 231 (553)
++||++++|.|||+|+.++|..... + .+.++|+++|||||| ++.++++|++||.|++++|+||.++||+
T Consensus 155 ~~El~v~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~dtrl~~R~LdlR-~~~~~~i~r~rs~i~~~~R~fl~~~gFi 233 (550)
T PTZ00401 155 DIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVNFDTRLNSRWMDLR-TPASGAIFRLQSRVCQYFRQFLIDSDFC 233 (550)
T ss_pred cEEEEeeEEEEEeCCCCCCCCCcccccccccccccccChhhhhhhhhhhhc-CHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 9999999999999999889964321 1 257899999999997 8999999999999999999999999999
Q ss_pred EEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEec
Q psy11418 232 EVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMA 310 (553)
Q Consensus 232 EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a 310 (553)
||+||+|+..++++++++|.+ +|||.++||++|||||+|+++++|++|||+||||||||+++| ||+||||||||||+
T Consensus 234 EV~TP~L~~~~~egga~~F~v--~yf~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRaE~s~T~RHl~EFt~Le~E~~ 311 (550)
T PTZ00401 234 EIHSPKIINAPSEGGANVFKL--EYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMR 311 (550)
T ss_pred EEeCCccccCCCCcccccccc--ccCCCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeCCCCCCCCCccchhhhhhhhH
Confidence 999999976544445678975 689999999999999999999999999999999999999997 89999999999999
Q ss_pred cC-CHHHHHHHHHHHHhcccccCCC
Q psy11418 311 YA-DYNDLMHLTEDLISGRKEDRNR 334 (553)
Q Consensus 311 ~~-~~~~~m~~~e~li~~~~~~~~~ 334 (553)
|. +|+|+|+++|+||.++++++..
T Consensus 312 ~~~~y~evm~~~e~l~~~i~~~l~~ 336 (550)
T PTZ00401 312 INEHYYEVLDLAESLFNYIFERLAT 336 (550)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHc
Confidence 85 7999999999999999765543
|
|
| >TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-54 Score=470.15 Aligned_cols=237 Identities=29% Similarity=0.518 Sum_probs=209.8
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc---------cc
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK---------TK 159 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~---------t~ 159 (553)
.|++|+|+|||+++|.+| |++|++|||++|.+|||++++ ++.+ +.++.|+.||+|.|+|++.+ ++
T Consensus 14 ~g~~V~l~GwV~~~R~~G-kl~Fi~LrD~sg~iQvv~~~~----~~~~-~~~~~L~~esvV~V~G~v~~r~~~~~n~~~~ 87 (583)
T TIGR00459 14 LGQTVTLAGWVNRRRDLG-GLIFIDLRDRSGIVQVVCDPD----ADAL-KLAKGLRNEDVVQVKGKVSARPEGNINRNLD 87 (583)
T ss_pred CCCEEEEEEEEEEEEcCC-CcEEEEEEeCCccEEEEEeCC----HHHH-HHHhcCCCCCEEEEEEEEEeCCccccCccCC
Confidence 577899999999999999 899999999999999999865 2334 45678999999999999975 45
Q ss_pred CCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceec
Q psy11418 160 KGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMN 239 (553)
Q Consensus 160 ~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~ 239 (553)
+|++||.++++++|++|..++|..+.+..+.++|+++|||||| |+.++++|++||+|++++|+||.++||+||+||+|+
T Consensus 88 tg~iEl~~~~i~iL~~a~~~P~~~~~~~~~~~~Rl~~RyLDLR-~~~~~~~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~ 166 (583)
T TIGR00459 88 TGEIEILAESITLLNKSKTPPLIIEKTDAEEEVRLKYRYLDLR-RPEMQQRLKLRHKVTKAVRNFLDQQGFLEIETPMLT 166 (583)
T ss_pred CCcEEEEEeEEEEeecCCCCCCcccccccchhhhcccceEEcC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeec
Confidence 8999999999999999975433333455678999999999995 899999999999999999999999999999999998
Q ss_pred c-ccCCCCCcceeeccCCCCccee-eeeCHHHHHHHHHHccCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHH
Q psy11418 240 M-IAGGATAKPFVTHHNDLNMDLY-MRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDL 317 (553)
Q Consensus 240 ~-~~gga~a~~F~t~~~~~~~~~~-L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~ 317 (553)
. .++| |++|.++++.++.++| |+||||||+|+|+++|++|||+||||||||+++++|+|||||||+|++|+|++|+
T Consensus 167 ~s~~eG--ar~f~vp~~~~~~~~y~L~qSpQlykq~l~v~G~ervfqI~~~FR~E~~~t~r~pEFT~le~E~af~d~~dv 244 (583)
T TIGR00459 167 KSTPEG--ARDYLVPSRVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQPEFTQIDMEMSFMTQEDV 244 (583)
T ss_pred cCCCCC--CcceeeeeecCCCceeecCCCHHHHHHHHHhcccCcEEEEcceeeCCCCCCCCCcccCcceeeecCCCHHHH
Confidence 5 4444 3679887776676666 9999999999999999999999999999999999877999999999999999999
Q ss_pred HHHHHHHHhcccccCCC
Q psy11418 318 MHLTEDLISGRKEDRNR 334 (553)
Q Consensus 318 m~~~e~li~~~~~~~~~ 334 (553)
|+++|+||+++++.+..
T Consensus 245 m~~~E~li~~v~~~v~~ 261 (583)
T TIGR00459 245 MELIEKLVSHVFLEVKG 261 (583)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999876544
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences. |
| >COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-53 Score=443.39 Aligned_cols=232 Identities=29% Similarity=0.410 Sum_probs=210.6
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc--CCceeEeee
Q psy11418 91 VTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSIIPK 168 (553)
Q Consensus 91 ~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~--~ge~~l~~~ 168 (553)
++|+|+|||+++|.+| +++|+.|||+++.||||+.++.. .++.| + ++.|..||+|.|+|++.+++ .|.+||+++
T Consensus 17 ~~V~v~GWV~~~R~~g-~i~Fi~lrDgsg~iQ~v~~~~~~-~~~~~-~-~~~L~~es~v~V~G~v~~~~~a~~g~El~v~ 92 (435)
T COG0017 17 QEVTVRGWVHNKRDLG-KIIFLVLRDGSGFIQAVVPKNKV-YEELF-K-AKKLTLESSVVVTGIVKASPKAPQGFELQVE 92 (435)
T ss_pred cEEEEEEEeeeecccC-CeEEEEEEcCCcEEEEEEECCCC-cHHHh-h-hhcCCCccEEEEEEEEEcCCCCCCCEEEEEE
Confidence 7899999999999999 89999999999999999997543 34555 3 78999999999999999875 688999999
Q ss_pred eEEEeccCCCCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCc
Q psy11418 169 KLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAK 248 (553)
Q Consensus 169 ~i~il~~~~~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~ 248 (553)
+++|++.+..++|.+..+-++.|+++++||||+| ++...++|++||.|++++|+||.++||+||+||+|++++.+++++
T Consensus 93 ~i~Vl~~a~~~~Pi~~~~~~~~e~lld~rhL~lR-~~~~~Av~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~EGg~e 171 (435)
T COG0017 93 KIEVLGEADPPYPIDKKEHSELETLLDNRHLDLR-TPKIQAVFKIRSSILRAIREFFYENGFTEVHTPIITASATEGGGE 171 (435)
T ss_pred EEEEeeccCCCCCcCcccccCHHHHHhchheecc-ccchHHHHhHHHHHHHHHHHHHHhCCcEEecCceEeccCCCCCce
Confidence 9999999966788765544468999999999997 899999999999999999999999999999999998766555578
Q ss_pred ceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCCHHHHHHHHHHHHhc
Q psy11418 249 PFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYADYNDLMHLTEDLISG 327 (553)
Q Consensus 249 ~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~ 327 (553)
+|.+ +||+.++||+||||||+|.++++ ++|||+|||+||+|+++| |||.||||+|+||+|++++|+|+++|+||++
T Consensus 172 lF~v--~yf~~~a~LtqS~QLyke~~~~a-l~rVf~igP~FRAE~s~T~RHL~EF~~ld~Emaf~~~~d~m~l~E~~i~~ 248 (435)
T COG0017 172 LFKV--DYFDKEAYLTQSPQLYKEALAAA-LERVFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFADLNDVMDLAEELIKY 248 (435)
T ss_pred eEEE--eecCcceEEecCHHHHHHHHHHH-hCceEEecCceecCCCCCcchhhhHheecceeccCcHHHHHHHHHHHHHH
Confidence 9986 69999999999999999998765 999999999999999998 7999999999999999999999999999999
Q ss_pred ccc
Q psy11418 328 RKE 330 (553)
Q Consensus 328 ~~~ 330 (553)
+++
T Consensus 249 i~~ 251 (435)
T COG0017 249 LFK 251 (435)
T ss_pred HHH
Confidence 943
|
|
| >PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-53 Score=455.06 Aligned_cols=238 Identities=22% Similarity=0.306 Sum_probs=210.8
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc--CCceeE
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSI 165 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~--~ge~~l 165 (553)
..|++|+|+|||+++|.+| |++|++|+|+++.+|+++..+. +...| +.++.|++||+|.|+|++.+++ +|++||
T Consensus 14 ~~~~~V~i~G~v~~~R~~g-~~~Fi~lrD~~g~iq~~~~~~~--~~~~~-~~~~~l~~~s~v~v~G~v~~~~~~~~~~el 89 (450)
T PRK03932 14 YVGQEVTVRGWVRTKRDSG-KIAFLQLRDGSCFKQLQVVKDN--GEEYF-EEIKKLTTGSSVIVTGTVVESPRAGQGYEL 89 (450)
T ss_pred cCCCEEEEEEEEEEEEeCC-CeEEEEEECCCCcEEEEEEcCC--ChHHH-HHHhcCCCCcEEEEEEEEEcCCCCCCCEEE
Confidence 3578999999999999998 9999999999999999997654 34444 4567899999999999999875 579999
Q ss_pred eeeeEEEeccCCCCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCC
Q psy11418 166 IPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGA 245 (553)
Q Consensus 166 ~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga 245 (553)
.+++++||++|..++|..... ...+.++++||||+| ++.++++|++||.|++++|+||.++||+||+||+|+++.+++
T Consensus 90 ~~~~i~vl~~~~~~~p~~~~~-~~~~~~~~~r~l~lR-~~~~~~~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~~eg 167 (450)
T PRK03932 90 QATKIEVIGEDPEDYPIQKKR-HSIEFLREIAHLRPR-TNKFGAVMRIRNTLAQAIHEFFNENGFVWVDTPIITASDCEG 167 (450)
T ss_pred EEEEEEEccCCCCCCCCCccc-cChHHHhhCceeecc-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCceeccCCCC
Confidence 999999999986656643211 245789999999997 689999999999999999999999999999999999777777
Q ss_pred CCcceeecc-------CCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCCHHHH
Q psy11418 246 TAKPFVTHH-------NDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYADYNDL 317 (553)
Q Consensus 246 ~a~~F~t~~-------~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~~~~~ 317 (553)
+++||.+++ ++||.++||++|||+|||++ ++|++|||+||||||||++++ ||||||||||||++|+|++|+
T Consensus 168 ~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l-~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~~~~~~~~~ 246 (450)
T PRK03932 168 AGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAY-AMALGKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAFADLEDN 246 (450)
T ss_pred CCCceEeecccccccccccCCCcccccCHHHHHHHH-HhccCCeEEeeeccccCCCCCccccccccccceEEeccCHHHH
Confidence 789999865 79999999999999999975 589999999999999999975 899999999999999999999
Q ss_pred HHHHHHHHhcccccC
Q psy11418 318 MHLTEDLISGRKEDR 332 (553)
Q Consensus 318 m~~~e~li~~~~~~~ 332 (553)
|+++|++|+++++.+
T Consensus 247 m~~~e~li~~~~~~~ 261 (450)
T PRK03932 247 MDLAEEMLKYVVKYV 261 (450)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999996544
|
|
| >TIGR00457 asnS asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-52 Score=449.13 Aligned_cols=238 Identities=24% Similarity=0.316 Sum_probs=210.9
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCC--EEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc--cCCce
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEG--LKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT--KKGEL 163 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~--~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t--~~ge~ 163 (553)
..|++|+|+|||+++|.+| |++|++|+|++ +.||+|++++. +. .+...++.|+.||+|.|+|++.++ ++|++
T Consensus 14 ~~g~~v~v~Gwv~~~R~~~-~~~F~~lrD~~~~g~iQ~v~~~~~--~~-~~~~~~~~l~~gs~V~v~G~v~~~~~~~~~~ 89 (453)
T TIGR00457 14 FVGDEVTVSGWVRTKRSSK-KIIFLELNDGSSLGPIQAVINGED--NP-YLFQLLKSLTTGSSVSVTGKVVESPGKGQPV 89 (453)
T ss_pred cCCCEEEEEEEeEEEEcCC-CeEEEEEECCCCCccEEEEEeCCc--Ch-HHHHHHHcCCCCcEEEEEEEEEcCCCCCCCE
Confidence 3578899999999999888 99999999999 99999998762 23 334567889999999999999876 57899
Q ss_pred eEeeeeEEEeccCC-CCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceecccc
Q psy11418 164 SIIPKKLTLLSPCL-HMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 242 (553)
Q Consensus 164 ~l~~~~i~il~~~~-~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~ 242 (553)
||.+++++||++|. .++|.+... ...++++++||||+| ++.++++|++||.|++++|+||.++||+||+||+|+.+.
T Consensus 90 El~~~~i~vl~~~~~~~~P~~~~~-~~~~~~~~~r~l~lR-~~~~~~~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~ 167 (453)
T TIGR00457 90 ELQVKKIEVVGEAEPDDYPLQKKE-HSLEFLRDIAHLRLR-TNTLGAVMRVRNALSQAIHRYFQENGFTWVSPPILTSND 167 (453)
T ss_pred EEEEeEEEEEecCCccCCCCCccc-cChhhHhhCcceecC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCeEeecC
Confidence 99999999999997 456644222 345778899999997 788999999999999999999999999999999999777
Q ss_pred CCCCCcceeecc-------CCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCCH
Q psy11418 243 GGATAKPFVTHH-------NDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYADY 314 (553)
Q Consensus 243 gga~a~~F~t~~-------~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~~ 314 (553)
+++++++|.+.. ++||.++||++|||||||++ ++|++|||+||||||||++++ ||||||||||||++|+|+
T Consensus 168 ~eg~~~~F~v~~~~~~~~~~~~~~~~yL~~Spql~lq~l-~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~~~~ 246 (453)
T TIGR00457 168 CEGAGELFRVSTDGIDFSQDFFGKEAYLTVSGQLYLETY-ALALSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFANL 246 (453)
T ss_pred CCCCCCceEecccccccchhccCCccccccCHHHHHHHH-hhcccCceEeeeccccCCCCCCcCcchhccceeeeecCCH
Confidence 777789998862 38999999999999999976 689999999999999999997 899999999999999999
Q ss_pred HHHHHHHHHHHhcccccC
Q psy11418 315 NDLMHLTEDLISGRKEDR 332 (553)
Q Consensus 315 ~~~m~~~e~li~~~~~~~ 332 (553)
+|+|+++|++++++++.+
T Consensus 247 ~dvm~~~E~lv~~i~~~~ 264 (453)
T TIGR00457 247 NDLLQLAETLIKYIIKAV 264 (453)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999997654
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn. |
| >PLN02903 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-52 Score=456.55 Aligned_cols=251 Identities=24% Similarity=0.447 Sum_probs=213.4
Q ss_pred cccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCC
Q psy11418 67 TVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRG 146 (553)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~g 146 (553)
.+||++.++... ..|++|+|+|||+++|.+| +++|++|||++|.+|||++.+.. .+ ..+.++.|+.|
T Consensus 58 ~rt~~cg~l~~~---------~~gk~V~l~GWV~~~R~~G-~l~FidLRD~~G~iQvV~~~~~~--~~-~~~~~~~L~~e 124 (652)
T PLN02903 58 SRSHLCGALSVN---------DVGSRVTLCGWVDLHRDMG-GLTFLDVRDHTGIVQVVTLPDEF--PE-AHRTANRLRNE 124 (652)
T ss_pred cCCCchhhcchh---------hCCCEEEEEEEEEEEecCC-CcEEEEEEcCCccEEEEEeCCcc--HH-HHHHHhcCCCC
Confidence 356666665432 3678899999999999999 89999999999999999987532 23 33567889999
Q ss_pred cEEEEEeecccc---------cCCceeEeeeeEEEeccCCCCCCCCCCC------CCCcchhhcccchhhhccHHHHHHH
Q psy11418 147 DIIGVTGSPGKT---------KKGELSIIPKKLTLLSPCLHMLPHMHFG------VKDKETRFRQRYLDLMINERIRHKF 211 (553)
Q Consensus 147 d~V~v~G~~~~t---------~~ge~~l~~~~i~il~~~~~~lP~~~~~------l~~~e~r~~~R~ldl~~~~~~~~~~ 211 (553)
|+|.|+|+|.+. ++|++||.+++++||++|..++|....+ ..+.++|+++|||||| ++.++++|
T Consensus 125 svV~V~G~V~~r~~~~~n~~~~tGeiEl~~~~i~VL~~a~~~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR-~~~~q~~l 203 (652)
T PLN02903 125 YVVAVEGTVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVTTADEQKDSIKEEVRLRYRVLDLR-RPQMNANL 203 (652)
T ss_pred CEEEEEEEEEeCCCcCcCCCCCCCCEEEEEeEEEEEecCCCCCCccccccccccccCChhhhhccceeecC-CHHHHHHH
Confidence 999999998743 4699999999999999998778854332 2467899999999997 79999999
Q ss_pred HHHHHHHHHHHHHhhh-CCeEEEecceeccccCCCCCcceeeccCC-CCcceeeeeCHHHHHHHHHHccCCcEEEEcccc
Q psy11418 212 IVRAQIIAYVRRYLDS-LGFLEVETPMMNMIAGGATAKPFVTHHND-LNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQF 289 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~~-~gF~EV~TPil~~~~gga~a~~F~t~~~~-~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~F 289 (553)
++||+|++++|+||.+ +||+||+||+|+.+.+++ |++|.+.... .+..+||+||||||+|+||++|++|||+|||||
T Consensus 204 r~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~eG-ardf~v~~~~~~g~~y~L~qSPQlykQ~Lm~~G~~RvFqIa~~F 282 (652)
T PLN02903 204 RLRHRVVKLIRRYLEDVHGFVEIETPILSRSTPEG-ARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDRYYQIARCF 282 (652)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEECCeeccCCCCC-CcccEEeeecCCCcccccCCCHHHHHHHHHhccCCcEEEEehhh
Confidence 9999999999999997 999999999998543322 3567665432 355677999999999999999999999999999
Q ss_pred ccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcccccC
Q psy11418 290 RNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDR 332 (553)
Q Consensus 290 R~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~~ 332 (553)
|+|+++++|+||||||||||+|+|++|+|+++|+|++++++.+
T Consensus 283 R~E~~~t~RhpEFTqLE~E~sf~d~~dvm~~~E~li~~v~~~~ 325 (652)
T PLN02903 283 RDEDLRADRQPEFTQLDMELAFTPLEDMLKLNEDLIRQVFKEI 325 (652)
T ss_pred ccCCCCCCcccceeeeeeeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999877999999999999999999999999999998744
|
|
| >PRK00476 aspS aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=455.57 Aligned_cols=248 Identities=28% Similarity=0.472 Sum_probs=216.1
Q ss_pred ccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCc
Q psy11418 68 VTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGD 147 (553)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd 147 (553)
+++++.++...+ .|++|+|+|||+++|.+| +++|++|||++|.+|+|++.. .+.| +.++.|+.||
T Consensus 4 r~~~~~~l~~~~---------~g~~V~l~GwV~~~R~~g-~l~Fi~LrD~~g~iQ~v~~~~----~~~~-~~~~~l~~es 68 (588)
T PRK00476 4 RTHYCGELRESH---------VGQTVTLCGWVHRRRDHG-GLIFIDLRDREGIVQVVFDPD----AEAF-EVAESLRSEY 68 (588)
T ss_pred cceeHHHhhHHh---------CCCEEEEEEEEEEEEeCC-CeEEEEEEeCCceEEEEEeCC----HHHH-HHHhCCCCCC
Confidence 566677665433 467899999999999999 999999999999999999862 2344 5668899999
Q ss_pred EEEEEeeccccc---------CCceeEeeeeEEEeccCCCCCCCCCCCC--CCcchhhcccchhhhccHHHHHHHHHHHH
Q psy11418 148 IIGVTGSPGKTK---------KGELSIIPKKLTLLSPCLHMLPHMHFGV--KDKETRFRQRYLDLMINERIRHKFIVRAQ 216 (553)
Q Consensus 148 ~V~v~G~~~~t~---------~ge~~l~~~~i~il~~~~~~lP~~~~~l--~~~e~r~~~R~ldl~~~~~~~~~~~~rs~ 216 (553)
+|.|+|++.+++ +|++||.+++++||++|. ++|....+. .+.++|+++|||||| ++.++++|++||+
T Consensus 69 ~V~V~G~v~~~~~~~~n~~~~~g~~El~~~~i~il~~a~-~lP~~~~~~~~~~~~~Rl~~R~LdlR-~~~~~~~l~~Rs~ 146 (588)
T PRK00476 69 VIQVTGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSK-TLPFPIDDEEDVSEELRLKYRYLDLR-RPEMQKNLKLRSK 146 (588)
T ss_pred EEEEEEEEEecCCcccCccCCCCcEEEEEeEEEEEecCC-CCCCcccccccCChhhhhhcceEeec-CHHHHHHHHHHHH
Confidence 999999998754 789999999999999998 788764332 467899999999997 8999999999999
Q ss_pred HHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccC-CCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCC
Q psy11418 217 IIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHN-DLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGID 295 (553)
Q Consensus 217 i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~-~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~ 295 (553)
+++++|+||.++||+||+||+|+++.+++ |++|.++.. +.+..+||++|||+|+|+|+++|++|||+||||||+|+++
T Consensus 147 i~~~iR~ff~~~gFiEV~TP~L~~s~~eg-a~~f~v~~~~~~~~~~~L~qSpql~kq~l~~~g~~rvfqi~~~FR~E~~~ 225 (588)
T PRK00476 147 VTSAIRNFLDDNGFLEIETPILTKSTPEG-ARDYLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLR 225 (588)
T ss_pred HHHHHHHHHHHCCCEEEECCeeecCCCCC-CccceecccccCCceeecCCCHHHHHHHHHhcccCceEEEeceeecCCCC
Confidence 99999999999999999999998644332 578988755 4566778999999999999999999999999999999999
Q ss_pred CCccCCcceeeeEeccCCHHHHHHHHHHHHhcccccCC
Q psy11418 296 LTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDRN 333 (553)
Q Consensus 296 ~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~~~ 333 (553)
++|+|||||||||++|+|++|+|+++|++++++++.+.
T Consensus 226 ~~r~~EFt~le~e~af~~~~dvm~~~E~li~~i~~~~~ 263 (588)
T PRK00476 226 ADRQPEFTQIDIEMSFVTQEDVMALMEGLIRHVFKEVL 263 (588)
T ss_pred CCcCcccccceeeecCCCHHHHHHHHHHHHHHHHHHHh
Confidence 97777999999999999999999999999999987543
|
|
| >PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=458.38 Aligned_cols=237 Identities=23% Similarity=0.457 Sum_probs=205.7
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc---------c
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT---------K 159 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t---------~ 159 (553)
.|++|+|+|||+++|.+| +++|++|||++|.+|||++++.. +.+.| ..++.|+.||+|.|+|++.++ +
T Consensus 17 ~g~~V~l~GWV~~~R~~G-~l~FidLRD~~G~iQvV~~~~~~-~~~~~-~~~~~L~~EsvV~V~G~v~~r~~~~~n~~~~ 93 (706)
T PRK12820 17 TGREVCLAGWVDAFRDHG-ELLFIHLRDRNGFIQAVFSPEAA-PADVY-ELAASLRAEFCVALQGEVQKRLEETENPHIE 93 (706)
T ss_pred CCCEEEEEEEEEEEEcCC-CcEEEEEEeCCccEEEEEeCCcC-CHHHH-HHHhcCCCCCEEEEEeEEeccCccccCCCCC
Confidence 577899999999999999 89999999999999999987643 33333 567889999999999998763 3
Q ss_pred CCceeEeeeeEEEeccCC-CCCCCC--CC---------CCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhh
Q psy11418 160 KGELSIIPKKLTLLSPCL-HMLPHM--HF---------GVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDS 227 (553)
Q Consensus 160 ~ge~~l~~~~i~il~~~~-~~lP~~--~~---------~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~ 227 (553)
+|++||.+++++||++|. .|+|.. ++ ...+.++|+++|||||| ++.++++|++||.+++++|+||.+
T Consensus 94 tg~iEl~~~~i~iL~~a~~lP~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR-~~~~~~~lr~Rs~i~~~iR~fl~~ 172 (706)
T PRK12820 94 TGDIEVFVRELSILAASEALPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIR-RPAMQDHLAKRHRIIKCARDFLDS 172 (706)
T ss_pred CCcEEEEeeEEEEEecCCCCCCCCcccccccccccccccccCHhhhhhCceeecC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999996 234321 11 13467899999999996 899999999999999999999999
Q ss_pred CCeEEEecceeccccCCCCCcceeeccCCCCccee-eeeCHHHHHHHHHHccCCcEEEEccccccCCCCCCccCCcceee
Q psy11418 228 LGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLY-MRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCE 306 (553)
Q Consensus 228 ~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~-L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~~H~~EFt~lE 306 (553)
+||+||+||+|+.+.+++ |++|.++.++++..+| |+||||||+|+|+++|++|||+||||||+|+++++|+|||||||
T Consensus 173 ~gFiEVeTPiL~~s~~eG-Ar~~~~p~~~~~~~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR~E~~~t~r~pEFT~LE 251 (706)
T PRK12820 173 RGFLEIETPILTKSTPEG-ARDYLVPSRIHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFRDEDLRPNRQPEFTQLD 251 (706)
T ss_pred CCCEEEeCCccccCCCCC-CcceEEeeecCCCcceecCCCHHHHHHHHHhccCCcEEEEechhcCCCCCCCcCccccccc
Confidence 999999999998543332 4778776666666665 99999999999999999999999999999999998889999999
Q ss_pred eEeccCCHHHHHHHHHHHHhcccc
Q psy11418 307 FYMAYADYNDLMHLTEDLISGRKE 330 (553)
Q Consensus 307 ~e~a~~~~~~~m~~~e~li~~~~~ 330 (553)
|||+|+|++|+|+++|+||+++++
T Consensus 252 ~E~af~d~~dvm~l~E~li~~v~~ 275 (706)
T PRK12820 252 IEASFIDEEFIFELIEELTARMFA 275 (706)
T ss_pred eeeccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999986
|
|
| >PLN02603 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-50 Score=437.47 Aligned_cols=240 Identities=18% Similarity=0.232 Sum_probs=206.4
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCE--EEEEEEecccCCCHHHHHHHhc-cCCCCcEEEEEeecccccCCc-
Q psy11418 87 VLENVTLSVAGRVHAIRESGTKLMFYDLRGEGL--KIQVMANARMYQSEEEFASDLV-KIKRGDIIGVTGSPGKTKKGE- 162 (553)
Q Consensus 87 ~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~--~iQvv~~~~~~~~~~~~~~~~~-~l~~gd~V~v~G~~~~t~~ge- 162 (553)
...|++|+|+|||+++|.+| +++|++|+|+++ .||||++++. ..|....+ .|+.||+|.|+|++.+++.++
T Consensus 104 ~~~g~~V~v~GwV~~iR~~g-~~~Fi~l~Dgs~~~~lQ~v~~~~~----~~~~~l~~~~l~~gs~V~V~G~v~~~~~~~~ 178 (565)
T PLN02603 104 ARVGKTLNVMGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTPDA----EGYDQVESGLITTGASVLVQGTVVSSQGGKQ 178 (565)
T ss_pred ccCCCEEEEEEEEEEEEeCC-CeEEEEEECCCCCEeEEEEEECcH----HHHHHHhhcCCCCCCEEEEEEEEEecCCCCc
Confidence 44688999999999999999 999999999985 7999997652 34433322 499999999999999877555
Q ss_pred -eeEeeeeEEEeccCCCCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccc
Q psy11418 163 -LSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI 241 (553)
Q Consensus 163 -~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~ 241 (553)
+||.++++++|++|+.++|..... ...+.....+|||+| ++.++++|++||++++++|+||.++||+||+||+|+++
T Consensus 179 ~~EL~v~~i~vlg~a~~~~Pi~~~~-~s~e~lr~~~hLr~R-t~~~~ai~RiRS~i~~air~ff~~~gF~eV~TPiLt~s 256 (565)
T PLN02603 179 KVELKVSKIVVVGKSDPSYPIQKKR-VSREFLRTKAHLRPR-TNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITAS 256 (565)
T ss_pred cEEEEEeEEEEEECCCCCCCCcccc-cchhhhhhhhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeeccc
Confidence 999999999999998888865432 235667778899997 79999999999999999999999999999999999876
Q ss_pred cCCCCCcceee-c---------------------------cCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCC
Q psy11418 242 AGGATAKPFVT-H---------------------------HNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEG 293 (553)
Q Consensus 242 ~gga~a~~F~t-~---------------------------~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~ 293 (553)
.++++++.|.+ + .+|||+++||++|||||+|.+ ++|++|||+||||||||+
T Consensus 257 ~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~~E~~-~~~l~rVy~igp~FRaE~ 335 (565)
T PLN02603 257 DCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETY-ATALSDVYTFGPTFRAEN 335 (565)
T ss_pred CCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCchHHHHHH-HhcccceEEEecceeCCC
Confidence 65555666643 2 257899999999999999985 679999999999999999
Q ss_pred CCC-CccCCcceeeeEeccCCHHHHHHHHHHHHhcccccCCC
Q psy11418 294 IDL-THNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDRNR 334 (553)
Q Consensus 294 ~~~-~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~~~~ 334 (553)
+++ |||+||||||+||+|+|++|+|+++|++|+++++.+..
T Consensus 336 s~T~RHL~EF~mlE~E~af~dl~d~m~~~E~~l~~~~~~v~~ 377 (565)
T PLN02603 336 SNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILE 377 (565)
T ss_pred CCCccccccceeeeeeeecCCHHHHHHHHHHHHHHHHHHHHc
Confidence 997 89999999999999999999999999999999766543
|
|
| >COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-50 Score=423.07 Aligned_cols=243 Identities=29% Similarity=0.518 Sum_probs=213.1
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc---------
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT--------- 158 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t--------- 158 (553)
..|++|+++|||++.|++| +++|+||||.+|.+|||++.+. +.+.| +.+..|+.+++|.|+|+|.+-
T Consensus 13 ~vG~~V~L~GWV~r~Rd~G-gliFiDLRDr~GivQvv~~~~~--~~~~~-~~a~~lr~E~vi~V~G~V~~R~e~~~N~~l 88 (585)
T COG0173 13 HVGQTVTLSGWVHRRRDHG-GLIFIDLRDREGIVQVVFDPED--SPEAF-EVASRLRNEFVIQVTGTVRARPEGTINPNL 88 (585)
T ss_pred HCCCEEEEEeeeeeccccC-CeEEEEcccCCCeEEEEECCcc--CHHHH-HHHHhcCceEEEEEEEEEEecCccccCCCC
Confidence 4789999999999999999 8999999999999999999863 34556 578899999999999987632
Q ss_pred cCCceeEeeeeEEEeccCCCCCCCCCCC--CCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecc
Q psy11418 159 KKGELSIIPKKLTLLSPCLHMLPHMHFG--VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETP 236 (553)
Q Consensus 159 ~~ge~~l~~~~i~il~~~~~~lP~~~~~--l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TP 236 (553)
++|++||.+++|+||++|. ++|....+ -...|+|+++|||||| +|.+.+.+++||+++.++|+||+++||+||+||
T Consensus 89 ~TGeiEv~a~~i~vln~s~-~lPf~i~d~~~~~Ee~RLkYRyLDLR-R~~m~~~l~lR~kv~~~iR~~ld~~gF~EiETP 166 (585)
T COG0173 89 PTGEIEVLAEEIEVLNASK-TLPFQIEDETNASEEIRLKYRYLDLR-RPEMQKNLKLRSKVTKAIRNFLDDQGFLEIETP 166 (585)
T ss_pred CcceEEEEeeeEEEEecCC-CCCcCCCCCCCcchhhhhhhhhhhhc-CHHHHHHHHHHHHHHHHHHHHHhhcCCeEeecC
Confidence 5899999999999999885 45643322 2456889999999997 799999999999999999999999999999999
Q ss_pred eec-cccCCCCCcceeeccCCCCccee-eeeCHHHHHHHHHHccCCcEEEEccccccCCCCCCccCCcceeeeEeccCCH
Q psy11418 237 MMN-MIAGGATAKPFVTHHNDLNMDLY-MRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADY 314 (553)
Q Consensus 237 il~-~~~gga~a~~F~t~~~~~~~~~~-L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~ 314 (553)
+|+ ++|.| |+-|.++..-..-.+| |.||||||+|.||++||+|+|+|++|||+|+..+.+.|||||+|+||+|.+-
T Consensus 167 iLtkSTPEG--ARDfLVPSRv~~G~FYALPQSPQlfKQLLMvsGfdRYyQIarCFRDEDlRaDRQPEFTQiD~EmSF~~~ 244 (585)
T COG0173 167 ILTKSTPEG--ARDFLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDLEMSFVDE 244 (585)
T ss_pred ccccCCCcc--ccccccccccCCCceeecCCCHHHHHHHHHHhcccceeeeeeeecccccccccCCcceeEeEEeecCCH
Confidence 998 56766 4888886554444455 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCCcccc
Q psy11418 315 NDLMHLTEDLISGRKEDRNRPCVM 338 (553)
Q Consensus 315 ~~~m~~~e~li~~~~~~~~~iqv~ 338 (553)
+|+|+++|+|+.++++....+-+.
T Consensus 245 edv~~~~E~l~~~vf~~~~~i~l~ 268 (585)
T COG0173 245 EDVMELIEKLLRYVFKEVKGIELK 268 (585)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccC
Confidence 999999999999999876654433
|
|
| >PLN02221 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-50 Score=436.33 Aligned_cols=253 Identities=17% Similarity=0.226 Sum_probs=206.7
Q ss_pred ccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecCCC-ceEEEEEEeCC--EEEEEEEecccCCCHHHHHHHhccCC
Q psy11418 68 VTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGT-KLMFYDLRGEG--LKIQVMANARMYQSEEEFASDLVKIK 144 (553)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~g~-kl~Fi~l~d~~--~~iQvv~~~~~~~~~~~~~~~~~~l~ 144 (553)
...+++++..+- ..+....|++|+|+|||+++|.+|+ +++|++|||++ |.||||+.++.. . ..+.|+
T Consensus 31 ~~~~~~~~~~~~---~~~~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~~g~iQvVv~~~~~----~---~~~~L~ 100 (572)
T PLN02221 31 DRVLIRSILDRP---DGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVMVDSSLY----D---LSTLVA 100 (572)
T ss_pred CceEHHHHhccc---cCChhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcccccEEEEEcCchh----h---HHhcCC
Confidence 333566654221 1233446889999999999999994 38999999999 799999976421 1 123689
Q ss_pred CCcEEEEEeecccc-----cCCceeEeeeeEEEeccCC-CCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHH
Q psy11418 145 RGDIIGVTGSPGKT-----KKGELSIIPKKLTLLSPCL-HMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQII 218 (553)
Q Consensus 145 ~gd~V~v~G~~~~t-----~~ge~~l~~~~i~il~~~~-~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~ 218 (553)
.|++|.|+|++.++ ++|++||+++++.|+|+|. .++|..... .+.+.++++|||++| ++.++++|++||.+.
T Consensus 101 ~ES~V~V~G~V~~~~~~~~~~~~iEl~v~~i~vl~~a~~~~~Pi~~~~-~~~e~lrr~~hLR~R-~~~~~Ai~RiRS~i~ 178 (572)
T PLN02221 101 TGTCVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYPLPKTK-LTLEFLRDVLHLRSR-TNSISAVARIRNALA 178 (572)
T ss_pred CceEEEEEEEEEeCCccCCCCccEEEEEeEEEEEecCCCCCCCCCCCc-CChHHHhhcchhhcC-CHHHHHHHHHHHHHH
Confidence 99999999998765 3568999999999999986 467754322 245667777777775 899999999999999
Q ss_pred HHHHHHhhhCCeEEEecceeccccCCCCCcceeec---------------------------------------------
Q psy11418 219 AYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTH--------------------------------------------- 253 (553)
Q Consensus 219 ~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~--------------------------------------------- 253 (553)
+++|+||.++||+||+||+|+.+.++++++.|.+.
T Consensus 179 ~aiR~ff~~~gFiEI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (572)
T PLN02221 179 FATHSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAK 258 (572)
T ss_pred HHHHHHHHHCCCEEEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhccc
Confidence 99999999999999999999765444445666541
Q ss_pred -------------------------------------------cCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccc
Q psy11418 254 -------------------------------------------HNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFR 290 (553)
Q Consensus 254 -------------------------------------------~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR 290 (553)
.+|||+++||++|||||+|+++ +|++|||+||||||
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~~-~~l~rVfeIgP~FR 337 (572)
T PLN02221 259 ASKEEITAAVAELKIAKESLAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVETYA-CALSSVYTFGPTFR 337 (572)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHHHHH-HhcCCeEEEcccee
Confidence 1699999999999999999964 68999999999999
Q ss_pred cCCCCC-CccCCcceeeeEeccCCHHHHHHHHHHHHhcccccCC
Q psy11418 291 NEGIDL-THNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDRN 333 (553)
Q Consensus 291 ~E~~~~-~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~~~ 333 (553)
||++++ ||||||||+|+||+|.|++|+|+++|+||+++++.+.
T Consensus 338 AE~s~T~RHL~EFtmlE~Emaf~d~~dvm~l~E~lv~~i~~~l~ 381 (572)
T PLN02221 338 AENSHTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKYMCKWLL 381 (572)
T ss_pred cCCCCCCcccccccceeeeeecCCHHHHHHHHHHHHHHHHHHHH
Confidence 999965 8999999999999999999999999999999976553
|
|
| >PTZ00425 asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-48 Score=421.78 Aligned_cols=236 Identities=21% Similarity=0.290 Sum_probs=202.2
Q ss_pred cCCcEEEEEEEEEeeecCCC-ceEEEEEEeCCE--EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc-----
Q psy11418 88 LENVTLSVAGRVHAIRESGT-KLMFYDLRGEGL--KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK----- 159 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~-kl~Fi~l~d~~~--~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~----- 159 (553)
..|++|+|+|||+++|.+|+ +++|++|+|+++ .+|||+++. ...| ..+++|+.|++|.|+|++.+++
T Consensus 79 ~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~~----~~~~-~~l~~l~~gs~v~v~G~v~~~~~~~~n 153 (586)
T PTZ00425 79 YIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQS----IENY-EKLLKCGVGCCFRFTGKLIISPVQNEN 153 (586)
T ss_pred cCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECCc----hHHH-HHHhcCCCccEEEEEEEEEcCCccccC
Confidence 46889999999999999984 599999999997 699999754 2344 3567799999999999987542
Q ss_pred -----CCceeEee-----eeEEEeccCC--CCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhh
Q psy11418 160 -----KGELSIIP-----KKLTLLSPCL--HMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDS 227 (553)
Q Consensus 160 -----~ge~~l~~-----~~i~il~~~~--~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~ 227 (553)
+|.+||.+ ++++||+++. .++|.... -...|.+..+||||+| ++.++++||+||.+..++|+||.+
T Consensus 154 ~~g~~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k-~~~~e~lr~~rhL~lR-~~~~~avlRiRs~l~~a~r~ff~~ 231 (586)
T PTZ00425 154 KKGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKK-NHGKEFLREVAHLRPR-SYFISSVIRIRNALAIATHLFFQS 231 (586)
T ss_pred cCCCCCccEEEEEecCCCceEEEEeccCCCCCCCCCCc-cCChhhhhhccceecc-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689987 7999999884 35564322 2356888899999997 799999999999999999999999
Q ss_pred CCeEEEecceeccccCCCCCcceeec------------------------------------------------------
Q psy11418 228 LGFLEVETPMMNMIAGGATAKPFVTH------------------------------------------------------ 253 (553)
Q Consensus 228 ~gF~EV~TPil~~~~gga~a~~F~t~------------------------------------------------------ 253 (553)
+||+||+||+|+++.++++++.|.+.
T Consensus 232 ~gF~eI~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 311 (586)
T PTZ00425 232 RGFLYIHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNANNNNGNSSSSNAVSSPAYPD 311 (586)
T ss_pred CCCEEeeCCeecccCCCCCcceEEeeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999876655556778651
Q ss_pred -------cCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCCHHHHHHHHHHHH
Q psy11418 254 -------HNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYADYNDLMHLTEDLI 325 (553)
Q Consensus 254 -------~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~~~~~m~~~e~li 325 (553)
.+|||+++||++|||||||++ ++|++|||+||||||||++++ ||++||||+|+||+|+|++|+|+++|++|
T Consensus 312 ~~~~~~~~~yF~k~ayL~~S~QLylE~~-~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li 390 (586)
T PTZ00425 312 QYLIDYKKDFFSKQAFLTVSGQLSLENL-CSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADLYDNMELAESYI 390 (586)
T ss_pred cccccccccccCcceEEEcCchHHHHHH-HhccCCEEEEeceEeCCCCCCCCCCcccceEEEEEecCCHHHHHHHHHHHH
Confidence 168999999999999999986 588999999999999999986 89999999999999999999999999999
Q ss_pred hccccc
Q psy11418 326 SGRKED 331 (553)
Q Consensus 326 ~~~~~~ 331 (553)
+++++.
T Consensus 391 ~~v~~~ 396 (586)
T PTZ00425 391 KYCIGY 396 (586)
T ss_pred HHHHHH
Confidence 999643
|
|
| >KOG0556|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=388.42 Aligned_cols=243 Identities=28% Similarity=0.422 Sum_probs=216.5
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccC-CCHHHHHHHhccCCCCcEEEEEeeccccc-------
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMY-QSEEEFASDLVKIKRGDIIGVTGSPGKTK------- 159 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~-~~~~~~~~~~~~l~~gd~V~v~G~~~~t~------- 159 (553)
..+..|+|+|||+..|..| |++|+.||+++.++||++..+.. ....++.++.+.|..+|+|.|.|+|.+.+
T Consensus 80 ~~~~~V~vRgrVhtsr~~G-K~~FlvLRq~~~tVQ~~~~~~~~~~isk~Mvkf~~~is~ESiV~v~g~v~k~~~~i~scT 158 (533)
T KOG0556|consen 80 NDGSEVLVRGRVHTSRLKG-KLCFLVLRQQGSTVQCLVAVNEDGTISKQMVKFAGSISKESIVDVRGVVVKVKEPIKSCT 158 (533)
T ss_pred cCCceEEEEEEEeeccccc-eEEEEEEeccCceEEEEEEcCCCchHHHHHHHHHhhcCcceEEEEEEEEecCCCcccccc
Confidence 3567899999999999999 99999999999999999977643 23567888899999999999999988653
Q ss_pred CCceeEeeeeEEEeccCCCCCCCCCC-------------------CCCCcchhhcccchhhhccHHHHHHHHHHHHHHHH
Q psy11418 160 KGELSIIPKKLTLLSPCLHMLPHMHF-------------------GVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAY 220 (553)
Q Consensus 160 ~ge~~l~~~~i~il~~~~~~lP~~~~-------------------~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ 220 (553)
++.+||++..+.++|.++..||.... .-.+.++|+++|.|||| +|..+++|++++.|+.+
T Consensus 159 ~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnRvlDLR-tptnqAiFriq~gvc~~ 237 (533)
T KOG0556|consen 159 VQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNRVLDLR-TPTNQAIFRIQAGVCFA 237 (533)
T ss_pred cceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccceecccccccceeeecc-cccchheeehHHHHHHH
Confidence 46799999999999999998985310 01246789999999997 89999999999999999
Q ss_pred HHHHhhhCCeEEEecceec--cccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-C
Q psy11418 221 VRRYLDSLGFLEVETPMMN--MIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-T 297 (553)
Q Consensus 221 ir~fl~~~gF~EV~TPil~--~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~ 297 (553)
+|+||..+||+||+||.|. +++||+ ..|.+ .||+.++||.||||||+|++++|+|+|||+|||+||+|++++ |
T Consensus 238 FRe~L~~kgF~EIhTpKli~asSEGGa--nvF~v--~Yfk~~A~LAQSPQLyKQMaI~gdf~rVyeIGpVfRAEdSnthR 313 (533)
T KOG0556|consen 238 FREYLRSKGFVEIHTPKLIGASSEGGA--NVFRV--SYFKQKAYLAQSPQLYKQMAICGDFERVYEIGPVFRAEDSNTHR 313 (533)
T ss_pred HHHHHHhcCcceecccccccccCCCCc--eeEEE--EeccCcchhhcChHHHHHHHHhcchhheeeecceeeccccchhh
Confidence 9999999999999999996 456665 47876 699999999999999999999999999999999999999998 8
Q ss_pred ccCCcceeeeEeccC-CHHHHHHHHHHHHhcccccCCCcc
Q psy11418 298 HNPEFTTCEFYMAYA-DYNDLMHLTEDLISGRKEDRNRPC 336 (553)
Q Consensus 298 H~~EFt~lE~e~a~~-~~~~~m~~~e~li~~~~~~~~~iq 336 (553)
|+.||+.||+||+|. +|+|+|+++.+++-.+++++.+.+
T Consensus 314 hltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~ery 353 (533)
T KOG0556|consen 314 HLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRERY 353 (533)
T ss_pred hhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997 799999999999999998886653
|
|
| >PLN02532 asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=411.79 Aligned_cols=220 Identities=16% Similarity=0.196 Sum_probs=188.3
Q ss_pred eecCCCceEEEEEEeCCEE--EEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc----cCCceeEeeeeEEEecc
Q psy11418 102 IRESGTKLMFYDLRGEGLK--IQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT----KKGELSIIPKKLTLLSP 175 (553)
Q Consensus 102 ~R~~g~kl~Fi~l~d~~~~--iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t----~~ge~~l~~~~i~il~~ 175 (553)
.|.+| +++|++|||+++. +|||++++.. .+ .+.|+.|++|.|+|++..+ ++|++||.+++|+||++
T Consensus 129 ~r~~g-~i~FI~LrDGSg~~~lQvVv~~~~~----~~---~~~L~~Es~V~V~G~V~~~~~~~~~g~iEl~v~~i~VLg~ 200 (633)
T PLN02532 129 APPPP-SVAYLLISDGSCVASLQVVVDSALA----PL---TQLMATGTCILAEGVLKLPLPAQGKHVIELEVEKILHIGT 200 (633)
T ss_pred cccCC-CcEEEEEECCCCccceEEEEeCCcc----cH---hhcCCCceEEEEEEEEEecCCCCCCCcEEEEeeEEEEEec
Confidence 78898 9999999999986 9999987642 11 2579999999999999866 27899999999999998
Q ss_pred CC-CCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceee--
Q psy11418 176 CL-HMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVT-- 252 (553)
Q Consensus 176 ~~-~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t-- 252 (553)
+. .++|..... ...|.++++||||+| ++.++++|++||.+..++|+||+++||+||+||+|+.+.++++++.|.+
T Consensus 201 a~~~p~Pi~~k~-~~~E~LR~~RhLdLR-t~~~~ailRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s~~EGa~elF~v~t 278 (633)
T PLN02532 201 VDPEKYPLSKKR-LPLDMLRDFSHFRPR-TTTVASVTRVRSALTHATHTFFQDHGFLYVQVPIITTTDATGFGEMFRVTT 278 (633)
T ss_pred CCCCCCcccccc-CCHHHHhhCcceecC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCccccccceec
Confidence 75 567754322 356777799999996 8999999999999999999999999999999999975443333344322
Q ss_pred --------------------------------------------------------------------------------
Q psy11418 253 -------------------------------------------------------------------------------- 252 (553)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (553)
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (633)
T PLN02532 279 LLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTNQLASQLEAKEKLKTGTSVKA 358 (633)
T ss_pred cccccccccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred -----ccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCCHHHHHHHHHHHHh
Q psy11418 253 -----HHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYADYNDLMHLTEDLIS 326 (553)
Q Consensus 253 -----~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~~~~~m~~~e~li~ 326 (553)
..+|||+++||++|||||||+++ +||+|||+|||+||||+++| |||+||||||+||+|+|++|+|+++|+||+
T Consensus 359 ~~~~f~~dyFg~~ayLtqS~QLylE~~~-~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~d~~dvM~l~E~lI~ 437 (633)
T PLN02532 359 DKLSFSKDFFSRPTYLTVSGRLHLESYA-CALGNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFSELEDAMNCAEDYFK 437 (633)
T ss_pred cccccccccCCCCeeeccCHHHHHHHHH-HhcCceEEEccceecCCCCCCcccccccceeeeehhcCHHHHHHHHHHHHH
Confidence 12589999999999999999965 69999999999999999996 899999999999999999999999999999
Q ss_pred cccccC
Q psy11418 327 GRKEDR 332 (553)
Q Consensus 327 ~~~~~~ 332 (553)
++++.+
T Consensus 438 ~v~k~v 443 (633)
T PLN02532 438 FLCKWV 443 (633)
T ss_pred HHHHHH
Confidence 996554
|
|
| >KOG0555|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=357.57 Aligned_cols=289 Identities=19% Similarity=0.247 Sum_probs=224.5
Q ss_pred cccccchhhhhhhccccccccCChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCcccccCCcEEEEE
Q psy11418 17 NSQQHTTAQTVTHLNTNYTQQCLTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVA 96 (553)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~ 96 (553)
|+++|+-.++..|..++.+.+.+. -+.|.+.+++.++..+.-+|+ ...+.....|+ +....|+.|+|.
T Consensus 62 kk~~kg~~~~~~k~~k~~~~ea~~---~ek~~~~le~a~ki~ised~s-----lp~ak~iki~~----s~~~r~qrVkv~ 129 (545)
T KOG0555|consen 62 KKIKKGWVRECKKSAKASQKEAEA---SEKREKNLEEAKKITISEDKS-----LPAAKKIKIYD----STENRGQRVKVF 129 (545)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHhHHhhhcccccCCCC-----Cchhheeeecc----cccccCceEEee
Confidence 444444444555544444422222 233445566666555543332 11111122222 233468899999
Q ss_pred EEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecc-----cccCCceeEeeeeEE
Q psy11418 97 GRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPG-----KTKKGELSIIPKKLT 171 (553)
Q Consensus 97 Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~-----~t~~ge~~l~~~~i~ 171 (553)
|||+++|.++ +++|+.||||+|.+|||++.+.+. .+. .-.|..++.|.|.|++. |+..|+.||.|+.|+
T Consensus 130 gWVhrlR~qk-~l~FivLrdg~gflqCVl~~kl~~---~yd--~~~Ls~essv~vYG~i~~~p~GK~apgghEl~vdy~E 203 (545)
T KOG0555|consen 130 GWVHRLRRQK-SLIFIVLRDGTGFLQCVLSDKLCQ---SYD--ALTLSTESSVTVYGTIKKLPEGKSAPGGHELNVDYWE 203 (545)
T ss_pred hhhHhhhhcC-ceEEEEEecCCceEEEEEcchhhh---hhc--cccccccceEEEEEEEecCcCCCCCCCCceEEeeeee
Confidence 9999999996 999999999999999999998762 232 33589999999999986 456889999999999
Q ss_pred EeccCCCC-CCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceec--cccCCCCCc
Q psy11418 172 LLSPCLHM-LPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMN--MIAGGATAK 248 (553)
Q Consensus 172 il~~~~~~-lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~--~~~gga~a~ 248 (553)
|++.+..+ .......-++++..+++|||-+| ....+.++++|+.+++++|++|.+.|++||.+|+|. +++||++
T Consensus 204 iig~Apag~~~n~lne~s~~~~~LdnrHl~iR-ge~~s~vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVEGGsT-- 280 (545)
T KOG0555|consen 204 IIGLAPAGGFDNPLNEESDVDVLLDNRHLVIR-GENASKVLKARAALLRAMRDHYFERGYTEVTPPTMVQTQVEGGST-- 280 (545)
T ss_pred eecccCCCcccccccccCCcceEeccceeEEe-chhHHHHHHHHHHHHHHHHHHHHhcCceecCCCceEEEEecCcce--
Confidence 99987543 11111223567889999999996 888999999999999999999999999999999995 5788875
Q ss_pred ceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCCHHHHHHHHHHHHhc
Q psy11418 249 PFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYADYNDLMHLTEDLISG 327 (553)
Q Consensus 249 ~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~ 327 (553)
.|. .||||.++||+||+||||+.++ ..+++||+|.++||+|.+.| |||+|||++|+|++|.+++|+|+.+|.++++
T Consensus 281 LFk--ldYyGEeAyLTQSSQLYLEtcl-pAlgdvy~I~~SyRAEkSrTRRHLsEytHVEaE~afltfd~ll~~iE~lvc~ 357 (545)
T KOG0555|consen 281 LFK--LDYYGEEAYLTQSSQLYLETCL-PALGDVYCIQQSYRAEKSRTRRHLSEYTHVEAECAFLTFDDLLDRIEALVCD 357 (545)
T ss_pred EEe--ecccCchhhccchhHHHHHHhh-hhcCceeEecHhhhhhhhhhhhhhhhheeeeeecccccHHHHHHHHHHHHHH
Confidence 565 4899999999999999999976 57999999999999999998 6999999999999999999999999999988
Q ss_pred cc
Q psy11418 328 RK 329 (553)
Q Consensus 328 ~~ 329 (553)
.+
T Consensus 358 ~v 359 (545)
T KOG0555|consen 358 SV 359 (545)
T ss_pred HH
Confidence 83
|
|
| >KOG2411|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=344.70 Aligned_cols=242 Identities=27% Similarity=0.463 Sum_probs=208.7
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecc---------cc
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPG---------KT 158 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~---------~t 158 (553)
..|+.|.++||+...|.+| .+.|..|||..|.+|+.++.+.. +.. ......++.+|+|.|.|++. +.
T Consensus 45 ~vg~kv~l~GWl~~~~~~k-~~~F~~LRD~~G~vq~lls~~s~-~l~--~~~~~~v~~e~vv~v~gtvv~Rp~~sin~km 120 (628)
T KOG2411|consen 45 DVGKKVVLCGWLELHRVHK-MLTFFNLRDAYGIVQQLLSPDSF-PLA--QKLENDVPLEDVVQVEGTVVSRPNESINSKM 120 (628)
T ss_pred ccCCEEEEeeeeeeeeccc-cceEEEeeccCcceEEEecchhh-hHH--hcccCCCChhheEeeeeeEecccccccCccc
Confidence 4788999999999999997 89999999999999999887653 111 12345689999999999875 33
Q ss_pred cCCceeEeeeeEEEeccCCCCCCCCCCC------CCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhC-CeE
Q psy11418 159 KKGELSIIPKKLTLLSPCLHMLPHMHFG------VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSL-GFL 231 (553)
Q Consensus 159 ~~ge~~l~~~~i~il~~~~~~lP~~~~~------l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~-gF~ 231 (553)
++|.+|+.+..+++++++...+|..... .....+|+++|||||| ++.++..++.||.+...+|+||.++ ||+
T Consensus 121 ~tg~vev~~e~~~vln~~~~~~p~~v~df~~ld~~~~er~rl~~RyldLR-~~kmq~nLrlRS~~v~~iR~yl~n~~GFv 199 (628)
T KOG2411|consen 121 KTGFVEVVAEKVEVLNPVNKKLPFEVTDFKELDDLAGERIRLRFRYLDLR-RPKMQNNLRLRSNVVKKIRRYLNNRHGFV 199 (628)
T ss_pred cccceEEEeeeeEEecCccCCCccchhhhhhhhccccccccchhhhhhhc-cHHHHHHHHHHHHHHHHHHHHHhhhcCee
Confidence 5899999999999999999888854322 1235578999999997 8999999999999999999999655 799
Q ss_pred EEecceec-cccCCCCCcceeeccCCC-CcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCCCccCCcceeeeEe
Q psy11418 232 EVETPMMN-MIAGGATAKPFVTHHNDL-NMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYM 309 (553)
Q Consensus 232 EV~TPil~-~~~gga~a~~F~t~~~~~-~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~ 309 (553)
||+||+|- .+|||| +.|.++...- |.-+.|.||||+|+|+||++|++|+|+|++|||+|+....+.|||||+|+||
T Consensus 200 evETPtLFkrTPgGA--~EFvVPtr~~~g~FYaLpQSPQQfKQlLMvsGidrYyQiARCfRDEdlR~DRQPEFTQvD~EM 277 (628)
T KOG2411|consen 200 EVETPTLFKRTPGGA--REFVVPTRTPRGKFYALPQSPQQFKQLLMVSGIDRYYQIARCFRDEDLRADRQPEFTQVDMEM 277 (628)
T ss_pred eccCcchhccCCCcc--ceeecccCCCCCceeecCCCHHHHHHHHHHhchhhHHhHHhhhcccccCcccCCcceeeeeEE
Confidence 99999995 678885 7888765444 4545599999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHhcccccCCCcc
Q psy11418 310 AYADYNDLMHLTEDLISGRKEDRNRPC 336 (553)
Q Consensus 310 a~~~~~~~m~~~e~li~~~~~~~~~iq 336 (553)
+|+|.+|+|.++|+++.+++.....++
T Consensus 278 sF~~~~dim~liEdll~~~ws~~k~~~ 304 (628)
T KOG2411|consen 278 SFTDQEDIMKLIEDLLRYVWSEDKGIQ 304 (628)
T ss_pred eccCHHHHHHHHHHHHHHhchhhcCCC
Confidence 999999999999999999997776654
|
|
| >KOG0554|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=337.42 Aligned_cols=229 Identities=21% Similarity=0.308 Sum_probs=198.5
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCCE--EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc--CCce
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGL--KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGEL 163 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~--~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~--~ge~ 163 (553)
..|++++|.|||+++|..| +++|++|+||+. .+|||++++ ..+.+..|+.|.|+|.+..++ ++++
T Consensus 18 ~~g~~~~i~GWvKsvr~~~-~~~Fl~i~DGs~~~~lQvVv~~~----------~~q~la~Gt~i~~~g~l~~~~~~~q~i 86 (446)
T KOG0554|consen 18 RAGDTISIGGWVKSVRKLK-KVTFLDINDGSCPSPLQVVVDSE----------QSQLLATGTCISAEGVLKVSKGAKQQI 86 (446)
T ss_pred CCCCceeecchhhhccccc-ceEEEEecCCCCCcceEEEechH----------HhhhccccceEEEEeeEEeccchheee
Confidence 3678899999999999999 899999999984 899999873 346799999999999876554 5678
Q ss_pred eEeeeeEEEeccCCCCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccC
Q psy11418 164 SIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAG 243 (553)
Q Consensus 164 ~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~g 243 (553)
++.++++.+++.+..++|.....+ .+|...+.-||.. |+..+.+++|+||++..++++||+++||++|+||||++++|
T Consensus 87 el~~eki~~vG~v~~~ypl~Kk~l-t~e~LR~~~HLR~-Rt~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DC 164 (446)
T KOG0554|consen 87 ELNAEKIKVVGTVDESYPLQKKKL-TPEMLRDKLHLRS-RTAKVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDC 164 (446)
T ss_pred eeeeeEEEEEeecCCCCCCccccC-CHHHHhhcccccc-hhhHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCC
Confidence 999999999999987766432222 2344445555555 58899999999999999999999999999999999998888
Q ss_pred CCCCcceeec------cCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCC-HH
Q psy11418 244 GATAKPFVTH------HNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYAD-YN 315 (553)
Q Consensus 244 ga~a~~F~t~------~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~-~~ 315 (553)
+++++.|.+. .++||+++||++|.|||++.+ ++++.|||++||+||+|++++ |||.||||+|.|+||++ ++
T Consensus 165 EGaGE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~~-a~~LsrvyTfgP~FRAEnS~tsRHLAEFwMlEaE~AF~~sl~ 243 (446)
T KOG0554|consen 165 EGAGEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLEAM-ACALSRVYTFGPTFRAENSHTSRHLAEFWMLEAELAFAESLD 243 (446)
T ss_pred CCCcceEEEEecCcccccccCCceEEEEeceehHHHH-HhhhcceEeeccceecccCCchhHHhhhhhhhhHHHHHHHHH
Confidence 7778999763 358999999999999999975 689999999999999999997 89999999999999998 99
Q ss_pred HHHHHHHHHHhcccc
Q psy11418 316 DLMHLTEDLISGRKE 330 (553)
Q Consensus 316 ~~m~~~e~li~~~~~ 330 (553)
|+|.++|.+++++++
T Consensus 244 d~m~~~e~~~K~mik 258 (446)
T KOG0554|consen 244 DLMSCAEAYIKHMIK 258 (446)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999953
|
|
| >cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=306.08 Aligned_cols=125 Identities=73% Similarity=1.255 Sum_probs=121.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEE
Q psy11418 204 NERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVY 283 (553)
Q Consensus 204 ~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVf 283 (553)
|+.++++|++||.+++++|+||.++||+||+||+|++.+||++++||.++.++++.++||++|||+|+|+++++|++|||
T Consensus 1 ~~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g~~~vf 80 (329)
T cd00775 1 NEEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVY 80 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEeccCCCCcceeeccCHHHHHHHHHhcCCCcEE
Confidence 67899999999999999999999999999999999988888889999998889999999999999999999999999999
Q ss_pred EEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcc
Q psy11418 284 EVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGR 328 (553)
Q Consensus 284 ei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~ 328 (553)
+||||||+|+++++|||||||||||++|+|++|+|+++|++|+++
T Consensus 81 ~i~~~FR~E~~~~rHl~EFt~le~e~~~~~~~~~m~~~e~li~~i 125 (329)
T cd00775 81 EIGRNFRNEGIDLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGL 125 (329)
T ss_pred EEeccccCCCCCCCCCCceEEEEEeeecCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=311.39 Aligned_cols=143 Identities=39% Similarity=0.659 Sum_probs=127.4
Q ss_pred CcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeec---cCCCCcceeeee
Q psy11418 189 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTH---HNDLNMDLYMRI 265 (553)
Q Consensus 189 ~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~---~~~~~~~~~L~~ 265 (553)
|.|+|+++||||+| ++..+++|++||.|++++|+||.++||+||+||+|++..+++++++|.|. ..+++.++||++
T Consensus 1 ~~e~~~~~r~l~~r-~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~ 79 (335)
T PF00152_consen 1 DEETRLDNRHLDLR-TPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQ 79 (335)
T ss_dssp -HHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-S
T ss_pred Chhhhhhccceecc-CcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcccceecCc
Confidence 46899999999997 79999999999999999999999999999999999987777778999997 458899999999
Q ss_pred CHHHHHHHHHHccCCcEEEEccccccCCC-CCCccCCcceeeeEeccCCHHHHHHHHHHHHhcccccC
Q psy11418 266 APELYLKMLVVGGLDRVYEVGRQFRNEGI-DLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDR 332 (553)
Q Consensus 266 Spql~lk~l~~~g~~rVfei~~~FR~E~~-~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~~ 332 (553)
|||+|+|+++++|++|||+||||||+|++ +.+|+|||||||||++|+|++++|+++|++|+++++.+
T Consensus 80 Spql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~~~ 147 (335)
T PF00152_consen 80 SPQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFKEL 147 (335)
T ss_dssp SSHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 56899999999999999999999999999999997644
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B .... |
| >cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=302.72 Aligned_cols=140 Identities=34% Similarity=0.530 Sum_probs=132.4
Q ss_pred CcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHH
Q psy11418 189 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPE 268 (553)
Q Consensus 189 ~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spq 268 (553)
+.++++++||||+| ++..++++++||.|++++|+||.++||+||+||+|+.+.++++++||.+ +++|.++||++|||
T Consensus 3 ~~~~~~~~r~l~lr-~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~--~~~~~~~yL~~Spq 79 (322)
T cd00776 3 NLETLLDNRHLDLR-TPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKV--SYFGKPAYLAQSPQ 79 (322)
T ss_pred ChHhhhhCceeeeC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCcccc--ccCCCcceecCCHH
Confidence 56899999999998 9999999999999999999999999999999999998888888999986 68999999999999
Q ss_pred HHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccC-CHHHHHHHHHHHHhcccccC
Q psy11418 269 LYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYA-DYNDLMHLTEDLISGRKEDR 332 (553)
Q Consensus 269 l~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~-~~~~~m~~~e~li~~~~~~~ 332 (553)
||||+++++ ++|||+||||||||++++ ||||||||||||++|+ |++|+|+++|++|+++++.+
T Consensus 80 l~lk~l~~~-~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l 144 (322)
T cd00776 80 LYKEMLIAA-LERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRV 144 (322)
T ss_pred HHHHHHHHh-hhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 999999887 999999999999999987 8999999999999999 99999999999999996544
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >PRK06462 asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=303.42 Aligned_cols=141 Identities=26% Similarity=0.409 Sum_probs=127.8
Q ss_pred CcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccc-----cCCCCCcceee-ccCCCCccee
Q psy11418 189 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI-----AGGATAKPFVT-HHNDLNMDLY 262 (553)
Q Consensus 189 ~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-----~gga~a~~F~t-~~~~~~~~~~ 262 (553)
+.++|+++|+++++ |+..+++|++||+|++++|+||.++||+||+||+|+++ .+|+. +||.+ +.+++|+++|
T Consensus 9 ~~~~~~~~r~~~lr-~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~-~~~~~~~~~~~~~~~y 86 (335)
T PRK06462 9 EYEEFLRMSWKHIS-SEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSD-LPVKQISIDFYGVEYY 86 (335)
T ss_pred chhhhhhhHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCcccc-CCccccccccCCCcee
Confidence 56889999999996 99999999999999999999999999999999999754 34555 78864 5789999999
Q ss_pred eeeCHHHHHHHHHHccCCcEEEEccccccCCCCC---CccCCcceeeeEeccCCHHHHHHHHHHHHhcccccC
Q psy11418 263 MRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL---THNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDR 332 (553)
Q Consensus 263 L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~~ 332 (553)
|++|||+||| ++++|++|||+||||||||++++ +|||||||||||++|+|++|+|+++|++|+++++.+
T Consensus 87 L~~Spql~k~-ll~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~~i~~~~ 158 (335)
T PRK06462 87 LADSMILHKQ-LALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVKEL 158 (335)
T ss_pred eccCHHHHHH-HHHhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999966 55678999999999999999999 999999999999999999999999999999986544
|
|
| >PRK12445 lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.1e-32 Score=296.00 Aligned_cols=171 Identities=43% Similarity=0.759 Sum_probs=153.5
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCCh
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK 404 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~~ 404 (553)
|..+-++.+.+|++++.... ..+.+...++.|+.||+|.|+|.+.++++|++||.+++++||++|..++|.++++..+.
T Consensus 85 F~~lrD~~g~iQ~~~~~~~~-~~~~~~~~~~~l~~Gd~V~v~G~~~~t~~gelel~~~~~~llsk~~~plP~~~~~~~d~ 163 (505)
T PRK12445 85 FVTLQDVGGRIQLYVARDSL-PEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQ 163 (505)
T ss_pred EEEEEeCCccEEEEEECCcc-chhhHHHHHhcCCCCCEEEEEEEEEecCCCcEEEEEeEEEEEecCCCCCCcccccccCh
Confidence 55677778899998874332 12234445678999999999999999999999999999999999999999999999999
Q ss_pred hhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhHH
Q psy11418 405 ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELY 484 (553)
Q Consensus 405 e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel~ 484 (553)
++|+++||||||+|+..+++|++||.++++||+||+++||+||+||+|++.+|||+++||.|++++|+.++||+||||||
T Consensus 164 e~r~r~Ryldl~~n~~~r~~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~~gGa~a~pF~t~~~~~~~~~yL~~SpELy 243 (505)
T PRK12445 164 EVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELY 243 (505)
T ss_pred hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeeEecCCCCcccceecccccCCcceeeecCHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHh-ccCcceEe
Q psy11418 485 LKST-HGSYKVTY 496 (553)
Q Consensus 485 ~k~l-~~~~~~~~ 496 (553)
+|+| +|+++++|
T Consensus 244 lKrlivgG~~rVf 256 (505)
T PRK12445 244 LKRLVVGGFERVF 256 (505)
T ss_pred HHHHHhccCCcEE
Confidence 9985 67777765
|
|
| >KOG1885|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-33 Score=288.15 Aligned_cols=171 Identities=65% Similarity=1.066 Sum_probs=162.5
Q ss_pred hcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCChh
Q psy11418 326 SGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKE 405 (553)
Q Consensus 326 ~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~~e 405 (553)
-.+..+..++||++|.+++.+.++|....+.|+.||+|.|+|.+.+|++|+++|.+.++.+|++|..++|....++++.|
T Consensus 126 ydl~~~g~klQvm~~~~~~~~~~~F~~~~~~lkrGDiig~~G~pgrt~~gELSi~~~~~~lLspcLh~lP~~~~gLkD~E 205 (560)
T KOG1885|consen 126 YDLHGDGVKLQVMANAKKITSEEDFEQLHKFLKRGDIIGVSGYPGRTKSGELSIIPNEIILLSPCLHMLPHEHFGLKDKE 205 (560)
T ss_pred EEEecCCeEEEEEEehhhcCCHHHHHHHHhhhhccCEEeeecCCCcCCCceEEEeecchheecchhccCChhhcCCCcHH
Confidence 34555667899999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhHHH
Q psy11418 406 TRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYL 485 (553)
Q Consensus 406 ~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel~~ 485 (553)
+|+++|||||..|+..+..|++||+|+..||.||+++||+|||||||...+|||.+.||.|+++.++.++||++|||||+
T Consensus 206 tRyrqRylDlilN~~~r~~f~~RakII~~iRkfld~rgFlEVETPmmn~iaGGA~AkPFIT~hndldm~LylRiAPEL~l 285 (560)
T KOG1885|consen 206 TRYRKRYLDLILNPEVRDRFRIRAKIISYIRKFLDSRGFLEVETPMMNMIAGGATAKPFITHHNDLDMDLYLRIAPELYL 285 (560)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhcCceEecchhhccccCccccCceeecccccCcceeeeechHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh-ccCcceEe
Q psy11418 486 KST-HGSYKVTY 496 (553)
Q Consensus 486 k~l-~~~~~~~~ 496 (553)
|+| .|++++||
T Consensus 286 K~LvVGGldrVY 297 (560)
T KOG1885|consen 286 KMLVVGGLDRVY 297 (560)
T ss_pred HHHHhccHHHHH
Confidence 998 67777766
|
|
| >TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-32 Score=294.85 Aligned_cols=170 Identities=48% Similarity=0.806 Sum_probs=152.9
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhc-ccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLV-KIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKD 403 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~-~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~ 403 (553)
|-.+.++.+.+|++++.... .++++...+ .|+.||+|.|+|.+.++++|++||.+++|++|++|..++|.++++..+
T Consensus 73 F~~l~D~~g~iQ~~~~~~~~--~~~~~~~~~~~l~~gd~V~v~G~~~~t~~gelel~~~~i~ilsk~~~plP~k~~~~~d 150 (496)
T TIGR00499 73 FITLQDESGQIQLYVNKDDL--PEDFYEFDEYLLDLGDIIGVTGYPFKTKTGELSVHVTELQILTKALRPLPDKFHGLTD 150 (496)
T ss_pred EEEEEcCCccEEEEEECCcC--cHHHHHHHHhcCCCCCEEEEEEEEEECCCCcEEEEeeEEEEEecCCCCCCccccccCC
Confidence 45677788899999876432 234455544 489999999999999999999999999999999999899999998889
Q ss_pred hhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhH
Q psy11418 404 KETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPEL 483 (553)
Q Consensus 404 ~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel 483 (553)
.++|+++||||||.|+.++++|++||.++++||+||+++||+||+||+|++++|||++.||.|++++|+.++||+|||||
T Consensus 151 ~e~r~r~R~Ldl~~n~~~~~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~gga~a~pF~t~~~~~~~~~yLriSpEL 230 (496)
T TIGR00499 151 QETRYRQRYLDLIVNPDSRQTFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIPGGANARPFITHHNALDMDLYLRIAPEL 230 (496)
T ss_pred hhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCCCCccceeEEeecccCCCceEEecCHHH
Confidence 99999999999998999999999999999999999999999999999999888999999999998899999999999999
Q ss_pred HHHHh-ccCcceEe
Q psy11418 484 YLKST-HGSYKVTY 496 (553)
Q Consensus 484 ~~k~l-~~~~~~~~ 496 (553)
|+|+| +|+++++|
T Consensus 231 ylKrlivgG~~rVf 244 (496)
T TIGR00499 231 YLKRLIVGGFEKVY 244 (496)
T ss_pred HHHHHHhCCCCceE
Confidence 99998 57777755
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms. |
| >COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-32 Score=287.21 Aligned_cols=171 Identities=49% Similarity=0.792 Sum_probs=158.8
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCCh
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK 404 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~~ 404 (553)
|..+-++.+++|+.++... ...+.+..+.+.++.||+|.|+|.+.+|++|+++|.|++|++|+||..|+|.+++++++.
T Consensus 81 F~~i~d~~gkiQ~yi~k~~-~~~~~~~~~~~~~dlGDiigv~G~~~~T~~GelSv~v~~~~lLsKsL~pLPeK~hgL~D~ 159 (502)
T COG1190 81 FADLQDGSGKIQLYVNKDE-VGEEVFEALFKKLDLGDIIGVEGPLFKTKTGELSVSVEELRLLSKSLRPLPEKFHGLTDK 159 (502)
T ss_pred EEEEecCCceEEEEEeccc-cchhhHHHHHhccccCCEEeeeeeeeecCCCceEEEEEEEeeecccCCCCChhhcCCccH
Confidence 4566778889999998754 234556667889999999999999999999999999999999999999999999999999
Q ss_pred hhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhHH
Q psy11418 405 ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELY 484 (553)
Q Consensus 405 e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel~ 484 (553)
|.|+++|||||.+|+..+..|..||+++++||+||+++||+|||||+|+..+|||++.||.|++|+++.++||+||||||
T Consensus 160 E~RyR~RylDLi~N~e~r~~f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF~ThhNald~dlyLRIApELy 239 (502)
T COG1190 160 EIRYRQRYLDLIVNPESRQTFIKRSKIIRAIREFLDDRGFLEVETPMLQPIPGGAAARPFITHHNALDMDLYLRIAPELY 239 (502)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCeEeccccccccCCCcccccceeeecccCCceEEeeccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh-ccCcceEe
Q psy11418 485 LKST-HGSYKVTY 496 (553)
Q Consensus 485 ~k~l-~~~~~~~~ 496 (553)
+|++ .|++.+||
T Consensus 240 LKRliVGG~erVf 252 (502)
T COG1190 240 LKRLIVGGFERVF 252 (502)
T ss_pred HHHHHhcCchhhe
Confidence 9998 67776655
|
|
| >PRK05159 aspC aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=285.82 Aligned_cols=216 Identities=23% Similarity=0.361 Sum_probs=175.9
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCC--CceeEEeeeEEEEeccCCCCCccccC--
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK--GELSIIPKKLTLLSPCLHMLPHMHFG-- 400 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~--g~~El~~~~i~vl~~~~~~~P~~~~~-- 400 (553)
|-.+-++.+.+|++++.... +++++.++.|+.||+|.|+|.+.+++. |++||.+++++||++|..++|+...+
T Consensus 36 Fl~LrD~~g~iQ~v~~~~~~---~~~~~~~~~L~~gs~V~v~G~v~~~~~~~~~~el~~~~i~vls~a~~~~P~~~~~~~ 112 (437)
T PRK05159 36 FLILRDRSGIIQVVVKKKVD---EELFETIKKLKRESVVSVTGTVKANPKAPGGVEVIPEEIEVLNKAEEPLPLDISGKV 112 (437)
T ss_pred EEEEEcCCcEEEEEEeCCcc---HHHHHHHhCCCCCcEEEEEEEEEcCCCCCCCEEEEEeEEEEEeCCCCCCCCCccccc
Confidence 45666777889998876432 567778899999999999999998874 89999999999999998889976553
Q ss_pred CCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcceeeeeecCCCCCcceeEE
Q psy11418 401 VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKPFVTHHNDLNMDLYMR 478 (553)
Q Consensus 401 ~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~~~~~t~~~~~~~~~yL~ 478 (553)
..+.++++++|||||| ++.++++|++||.++++||+||.++||+||+||+|+.++ ||+.+||+. |||.++||+
T Consensus 113 ~~~~~~~~~~r~Ldlr-~~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~~~----~~~~~~~L~ 187 (437)
T PRK05159 113 LAELDTRLDNRFLDLR-RPRVRAIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGTEGGAELFPID----YFEKEAYLA 187 (437)
T ss_pred cCCHHHHhhCcceecC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCcccccCCCCCcceEeEE----ecCCceEec
Confidence 3468999999999998 999999999999999999999999999999999998775 777799987 899999999
Q ss_pred eChhHHHHHhc-cCcceE----------------ecCCCCCCCC-----C------------------------------
Q psy11418 479 IAPELYLKSTH-GSYKVT----------------YHPDGPESGS-----P------------------------------ 506 (553)
Q Consensus 479 ~Spel~~k~l~-~~~~~~----------------~~~e~~~~~~-----~------------------------------ 506 (553)
+|||||+|++. ++++++ |+|||+|+.. .
T Consensus 188 ~Spql~~q~l~~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~~i~~~~~~~~~~~i~~ 267 (437)
T PRK05159 188 QSPQLYKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYEDVAENCEKELEL 267 (437)
T ss_pred CCHHHHHHHHHhcCCCcEEEEeceeeCCCCCCcccchhhheeeeeeeecccHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 99999999985 446554 4689987410 0
Q ss_pred cc--cC-CCCCceeeeHHHHHHHHh--CCCCCCCCCCChHHHHHHHh
Q psy11418 507 VE--ID-FTPPFRRLHMFPALEAAL--GVKLPNPTEFDTPEANKFLS 548 (553)
Q Consensus 507 ~~--~~-~~~~f~rit~~eA~~~~~--g~~~~~~~~~~~~~~~~~~~ 548 (553)
.. ++ +..||+||||.||++.+. |.++.++++++++....+++
T Consensus 268 ~~~~~~~~~~~f~rit~~eA~~~l~~~~~~~~~~~~~~~~~e~~l~~ 314 (437)
T PRK05159 268 LGIELPVPETPIPRITYDEAIEILKSKGNEISWGDDLDTEGERLLGE 314 (437)
T ss_pred hccCCCcCCCCceEeEHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHH
Confidence 01 11 347999999999998775 66666666666665555543
|
|
| >PTZ00417 lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=294.10 Aligned_cols=171 Identities=55% Similarity=0.914 Sum_probs=151.9
Q ss_pred HhcccccCCCccccccccccc-ChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQ-SEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKD 403 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~-~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~ 403 (553)
|..+.++.+.+|++++..... ..+.+....+.|+.||+|.|+|.+.++++|++||.++++++|++|..++|.++ +..+
T Consensus 153 F~~L~d~~g~iQv~~~~~~~~~~~~~~~~~~~~l~~Gd~V~V~G~~~~t~~gel~i~~~~i~llsk~l~~lP~~~-g~~d 231 (585)
T PTZ00417 153 FFDLVGDGAKIQVLANFAFHDHTKSNFAECYDKIRRGDIVGIVGFPGKSKKGELSIFPKETIILSPCLHMLPMKY-GLKD 231 (585)
T ss_pred EEEEEeCCeeEEEEEECCccCCCHHHHHHHHhcCCCCCEEEEEeEEcCCCCceEEEEEEEEEEEecCCCCCCccc-CCCC
Confidence 345556777899988753221 13344455688999999999999999999999999999999999999999887 7889
Q ss_pred hhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhH
Q psy11418 404 KETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPEL 483 (553)
Q Consensus 404 ~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel 483 (553)
.+.|+++||||||+|+..+++|++||+++++||+||+++||+||+||+|+++.|||+++||.|++++++.++||+|||||
T Consensus 232 ~e~r~r~RyLdL~~n~~~~~ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~GGA~a~PF~T~~n~~d~~lYLriSpEL 311 (585)
T PTZ00417 232 TEIRYRQRYLDLMINESTRSTFITRTKIINYLRNFLNDRGFIEVETPTMNLVAGGANARPFITHHNDLDLDLYLRIATEL 311 (585)
T ss_pred cccccccchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccCCcccceeEEecccCCCcceEEeecHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-ccCcceEe
Q psy11418 484 YLKST-HGSYKVTY 496 (553)
Q Consensus 484 ~~k~l-~~~~~~~~ 496 (553)
|+|+| +|+++++|
T Consensus 312 ~lKrLlvgG~~rVf 325 (585)
T PTZ00417 312 PLKMLIVGGIDKVY 325 (585)
T ss_pred HHHHHHHhCCCCEE
Confidence 99998 57777765
|
|
| >PLN02502 lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=293.40 Aligned_cols=172 Identities=56% Similarity=0.927 Sum_probs=154.2
Q ss_pred HhcccccCCCcccccccccccC-hHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQS-EEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKD 403 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~-~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~ 403 (553)
|..|.++.+.+|++++...... .+.+..+.+.|+.||+|.|+|.+.++++|++||.+++|+||++|..++|.++++..+
T Consensus 128 F~~LrD~~g~iQv~~~~~~~~~~~~~~~~~~~~l~~gdiV~V~G~~~~t~~gelel~~~~i~vLs~~l~plP~k~~~~~d 207 (553)
T PLN02502 128 FYDLRDDGGKIQLYADKKRLDLDEEEFEKLHSLVDRGDIVGVTGTPGKTKKGELSIFPTSFEVLTKCLLMLPDKYHGLTD 207 (553)
T ss_pred EEEEecCCccEEEEEECccccchhHHHHHHHhCCCCCcEEEEEEEEEecCCCCEEEEEeEEEEEeccCCCCCcccccccc
Confidence 4567778889999987654321 123556667899999999999999999999999999999999999999999999999
Q ss_pred hhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhH
Q psy11418 404 KETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPEL 483 (553)
Q Consensus 404 ~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel 483 (553)
.++|+++|||||++|+.++++|++||.|+++||+||+++||+||+||+|++++|||++.||.|++++|+.++||+|||||
T Consensus 208 ~e~r~r~RyLdl~~n~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~gGA~a~pF~t~~n~~~~~~yL~~Spel 287 (553)
T PLN02502 208 QETRYRQRYLDLIANPEVRDIFRTRAKIISYIRRFLDDRGFLEVETPMLNMIAGGAAARPFVTHHNDLNMDLYLRIATEL 287 (553)
T ss_pred hhhhccchhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeeeccCCCccccceeeecccCCcceeeecCHHH
Confidence 99999999999988999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHHh-ccCcceEe
Q psy11418 484 YLKST-HGSYKVTY 496 (553)
Q Consensus 484 ~~k~l-~~~~~~~~ 496 (553)
|+|+| +++++++|
T Consensus 288 ~lK~L~v~g~~rVf 301 (553)
T PLN02502 288 HLKRLVVGGFERVY 301 (553)
T ss_pred HHHHHHHhccCCEE
Confidence 99985 57777655
|
|
| >TIGR00462 genX lysyl-tRNA synthetase-like protein GenX | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-32 Score=280.39 Aligned_cols=121 Identities=32% Similarity=0.545 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceecccc-CCCCCcceeecc---CCCCcceeeeeCHHHHHHHHHHccCCcEEEEc
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHH---NDLNMDLYMRIAPELYLKMLVVGGLDRVYEVG 286 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~-gga~a~~F~t~~---~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~ 286 (553)
+++||.|++++|+||.++||+||+||+|++++ ++++++||.|++ +.+++++||++|||||+|+++++|++|||+||
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfeig 80 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQIC 80 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEEc
Confidence 47899999999999999999999999999774 556789999864 45678999999999999999999999999999
Q ss_pred cccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhccccc
Q psy11418 287 RQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKED 331 (553)
Q Consensus 287 ~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~ 331 (553)
||||||+++.||||||||||||++|+|++|+|+++|++++++++.
T Consensus 81 p~FRaE~~~~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~~ 125 (304)
T TIGR00462 81 KVFRNGERGRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGD 125 (304)
T ss_pred CceeCCCCCCCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999765
|
Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown. |
| >TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-31 Score=282.74 Aligned_cols=219 Identities=21% Similarity=0.343 Sum_probs=178.4
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC--CCceeEEeeeEEEEeccCCCCCccccCC-
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSIIPKKLTLLSPCLHMLPHMHFGV- 401 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~--~g~~El~~~~i~vl~~~~~~~P~~~~~~- 401 (553)
|..+.++.+.+|++++... ..++++..+..|+.||+|.|+|.+++++ +|++||.+++++||++|..++|++..+.
T Consensus 32 Fi~lrd~~g~iQ~v~~~~~--~~~~~~~~~~~l~~~s~v~v~G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~ 109 (428)
T TIGR00458 32 FVLLRDREGLIQITAPAKK--VSKNLFKWAKKLNLESVVAVRGIVKIKEKAPGGFEIIPTKIEVINEAKEPLPLDPTEKV 109 (428)
T ss_pred EEEEEeCCeeEEEEEECCc--CCHHHHHHHhCCCCCcEEEEEEEEEecCCCCCcEEEEEeEEEEEecCCCCCCCCccccC
Confidence 4567778888999887543 2356777889999999999999998766 5899999999999999988899877653
Q ss_pred -CChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcceeeeeecCCCCCcceeEE
Q psy11418 402 -KDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKPFVTHHNDLNMDLYMR 478 (553)
Q Consensus 402 -~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~~~~~t~~~~~~~~~yL~ 478 (553)
.+.++++++|||||| ++.++++|++||.++++||+||.++||+||+||+|++++ ||+.+||+. ||+.++||+
T Consensus 110 ~~~~~~r~~~R~ldlr-~~~~~~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~v~----~~~~~~yL~ 184 (428)
T TIGR00458 110 PAELDTRLDYRFLDLR-RPTVQAIFRIRSGVLESVREFLAEEGFIEVHTPKLVASATEGGTELFPIT----YFEREAFLG 184 (428)
T ss_pred CCCHHHHhhhhhhhhC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCceecCCCCCCcceeeeE----ecCCcEEEC
Confidence 467899999999999 999999999999999999999999999999999999887 677788876 899999999
Q ss_pred eChhHHHHHh-ccCcceEe----------------cCCCCCCCC----------------------------------Cc
Q psy11418 479 IAPELYLKST-HGSYKVTY----------------HPDGPESGS----------------------------------PV 507 (553)
Q Consensus 479 ~Spel~~k~l-~~~~~~~~----------------~~e~~~~~~----------------------------------~~ 507 (553)
+|||||+|++ +++++++| +|||+|+.. ..
T Consensus 185 ~Spql~~q~li~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~~~~~ 264 (428)
T TIGR00458 185 QSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEELVVRVFEDVPERCAHQLETL 264 (428)
T ss_pred cCHHHHHHHHHhcccCcEEEEecccccCCCCCccchheeeEeeeeeccCCHHHHHHHHHHHHHHHHHHHHhcchhhhhhc
Confidence 9999999986 56666544 688887400 01
Q ss_pred ccCC---CCCceeeeHHHHHHHH--hCCCCCCCCCCChHHHHHHHhCC
Q psy11418 508 EIDF---TPPFRRLHMFPALEAA--LGVKLPNPTEFDTPEANKFLSDP 550 (553)
Q Consensus 508 ~~~~---~~~f~rit~~eA~~~~--~g~~~~~~~~~~~~~~~~~~~~~ 550 (553)
..++ ..||+||||.||++.+ .|+++.+..+++++.+..+.+.+
T Consensus 265 ~~~~~~~~~pf~rity~eA~~~l~~~g~~~~~~~~l~~~~E~~l~~~~ 312 (428)
T TIGR00458 265 EFKLEKPEGKFVRLTYDEAIEMANAKGVEIGWGEDLSTEAEKALGEEM 312 (428)
T ss_pred ccccccCCCCceEEEHHHHHHHHHHcCCCCCCccccchHHHHHHHHHh
Confidence 1222 3589999999999744 47777776667777766666544
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). |
| >PRK00484 lysS lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=289.15 Aligned_cols=170 Identities=48% Similarity=0.782 Sum_probs=153.7
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCCh
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK 404 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~~ 404 (553)
|-.+-++.+.+|++++.... .++.+..++.|+.||+|.|+|.+.++++|++||.+++++||++|..++|.++++..+.
T Consensus 74 Fi~lrD~~g~iQ~v~~~~~~--~~~~~~~~~~l~~g~~v~v~G~v~~t~~ge~el~~~~~~vls~~~~plP~~~~~~~~~ 151 (491)
T PRK00484 74 FATLQDGSGRIQLYVSKDDV--GEEALEAFKKLDLGDIIGVEGTLFKTKTGELSVKATELTLLTKSLRPLPDKFHGLTDV 151 (491)
T ss_pred EEEEEcCCccEEEEEECCcC--CHHHHHHHhcCCCCCEEEEEEEEEEcCCCcEEEEEeEEEEEeccCCCCCcccccccch
Confidence 56677788899999875432 2445566677999999999999999999999999999999999998999998888899
Q ss_pred hhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhHH
Q psy11418 405 ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELY 484 (553)
Q Consensus 405 e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel~ 484 (553)
++|+++||||||+++.++++|++||.++++||+||+++||+||+||+|++++|||++.||.|+.++|+.++||++|||||
T Consensus 152 ~~r~r~R~lDl~~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~Ga~a~pF~t~~~~~~~~~yL~~Spql~ 231 (491)
T PRK00484 152 ETRYRQRYVDLIVNPESRETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIAGGAAARPFITHHNALDIDLYLRIAPELY 231 (491)
T ss_pred hhhccceeeehhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCceeccCCCccceeeeeccccCCCceEeccCHHHH
Confidence 99999999999989999999999999999999999999999999999998889999999999989999999999999999
Q ss_pred HHHh-ccCcceEe
Q psy11418 485 LKST-HGSYKVTY 496 (553)
Q Consensus 485 ~k~l-~~~~~~~~ 496 (553)
+|++ +++++++|
T Consensus 232 lk~l~v~g~~rVf 244 (491)
T PRK00484 232 LKRLIVGGFERVY 244 (491)
T ss_pred HHHHHhccCCcEE
Confidence 9997 57777766
|
|
| >TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=286.39 Aligned_cols=196 Identities=22% Similarity=0.384 Sum_probs=159.6
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEccccc---------CCCCceeEEeeeEEEEeccCCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK---------TKKGELSIIPKKLTLLSPCLHMLP 395 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~---------~~~g~~El~~~~i~vl~~~~~~~P 395 (553)
|..+.++.+.+|++++.. ++.+..++.|+.||+|.|+|++.+ +.+|++||.++++++|++|. .+|
T Consensus 35 Fi~LrD~sg~iQvv~~~~-----~~~~~~~~~L~~esvV~V~G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~-~~P 108 (583)
T TIGR00459 35 FIDLRDRSGIVQVVCDPD-----ADALKLAKGLRNEDVVQVKGKVSARPEGNINRNLDTGEIEILAESITLLNKSK-TPP 108 (583)
T ss_pred EEEEEeCCccEEEEEeCC-----HHHHHHHhcCCCCCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCC
Confidence 567778888999998752 455677899999999999999975 34889999999999999986 466
Q ss_pred cccc-CCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcceeeeeecCCCCCc
Q psy11418 396 HMHF-GVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHHNDLNM 473 (553)
Q Consensus 396 ~~~~-~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~~~~~~t~~~~~~~ 473 (553)
+... ...++++|+++|||||| ++.++++|++||.++++||+||+++||+||+||+|++++ +||.- |.++..+++.
T Consensus 109 ~~~~~~~~~~~~Rl~~RyLDLR-~~~~~~~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~eGar~--f~vp~~~~~~ 185 (583)
T TIGR00459 109 LIIEKTDAEEEVRLKYRYLDLR-RPEMQQRLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTPEGARD--YLVPSRVHKG 185 (583)
T ss_pred CcccccccchhhhcccceEEcC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeeccCCCCCCcc--eeeeeecCCC
Confidence 6553 34578999999999998 999999999999999999999999999999999999877 88763 2222224455
Q ss_pred cee-EEeChhHHHHHh-ccCcceEe---------------cCCCCCCC------------------------CCcccCCC
Q psy11418 474 DLY-MRIAPELYLKST-HGSYKVTY---------------HPDGPESG------------------------SPVEIDFT 512 (553)
Q Consensus 474 ~~y-L~~Spel~~k~l-~~~~~~~~---------------~~e~~~~~------------------------~~~~~~~~ 512 (553)
++| |++|||||+|++ +++++++| +|||+|+. ....+++.
T Consensus 186 ~~y~L~qSpQlykq~l~v~G~ervfqI~~~FR~E~~~t~r~pEFT~le~E~af~d~~dvm~~~E~li~~v~~~v~~~~~~ 265 (583)
T TIGR00459 186 EFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQPEFTQIDMEMSFMTQEDVMELIEKLVSHVFLEVKGIDLK 265 (583)
T ss_pred ceeecCCCHHHHHHHHHhcccCcEEEEcceeeCCCCCCCCCcccCcceeeecCCCHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 555 999999999985 57777655 89999751 11235778
Q ss_pred CCceeeeHHHHHHHHhC
Q psy11418 513 PPFRRLHMFPALEAALG 529 (553)
Q Consensus 513 ~~f~rit~~eA~~~~~g 529 (553)
.||+||||.|||++|+.
T Consensus 266 ~pf~r~ty~ea~~~yGs 282 (583)
T TIGR00459 266 KPFPVMTYAEAMERYGS 282 (583)
T ss_pred CCceEEEHHHHHHHHCC
Confidence 89999999999999943
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences. |
| >COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=275.17 Aligned_cols=215 Identities=21% Similarity=0.361 Sum_probs=177.0
Q ss_pred ceeeeEeccCCHHHHHHHHHHHHhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccC---------C
Q psy11418 303 TTCEFYMAYADYNDLMHLTEDLISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT---------K 373 (553)
Q Consensus 303 t~lE~e~a~~~~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~---------~ 373 (553)
|-+.|....-|+-.++ |..+-+..+.+||+|++. ..++.+..++.|+.|++|.|+|+|... +
T Consensus 19 ~L~GWV~r~Rd~Ggli------FiDLRDr~GivQvv~~~~---~~~~~~~~a~~lr~E~vi~V~G~V~~R~e~~~N~~l~ 89 (585)
T COG0173 19 TLSGWVHRRRDHGGLI------FIDLRDREGIVQVVFDPE---DSPEAFEVASRLRNEFVIQVTGTVRARPEGTINPNLP 89 (585)
T ss_pred EEEeeeeeccccCCeE------EEEcccCCCeEEEEECCc---cCHHHHHHHHhcCceEEEEEEEEEEecCccccCCCCC
Confidence 4445555444544443 678889999999999974 346789999999999999999988543 3
Q ss_pred CCceeEEeeeEEEEeccCCCCCccccC--CCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCce
Q psy11418 374 KGELSIIPKKLTLLSPCLHMLPHMHFG--VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPM 451 (553)
Q Consensus 374 ~g~~El~~~~i~vl~~~~~~~P~~~~~--~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPi 451 (553)
+|++||.+++++|||+|.. +|+...+ ..++++|++||||||| +|.++.+|++||+++.++|+||+++||+|||||+
T Consensus 90 TGeiEv~a~~i~vln~s~~-lPf~i~d~~~~~Ee~RLkYRyLDLR-R~~m~~~l~lR~kv~~~iR~~ld~~gF~EiETPi 167 (585)
T COG0173 90 TGEIEVLAEEIEVLNASKT-LPFQIEDETNASEEIRLKYRYLDLR-RPEMQKNLKLRSKVTKAIRNFLDDQGFLEIETPI 167 (585)
T ss_pred cceEEEEeeeEEEEecCCC-CCcCCCCCCCcchhhhhhhhhhhhc-CHHHHHHHHHHHHHHHHHHHHHhhcCCeEeecCc
Confidence 8999999999999998864 6666655 4688999999999999 9999999999999999999999999999999999
Q ss_pred eeccC-CCcc--eeeeeecCCCCCcceeEEeChhHHHHHh-ccCcceEe---------------cCCCCCC---------
Q psy11418 452 MNMIA-GGAT--AKPFVTHHNDLNMDLYMRIAPELYLKST-HGSYKVTY---------------HPDGPES--------- 503 (553)
Q Consensus 452 L~~~~-~ga~--~~~~~t~~~~~~~~~yL~~Spel~~k~l-~~~~~~~~---------------~~e~~~~--------- 503 (553)
|++|+ +||+ ++|.+++...| +-|-||||+|+|-| .++|++.| .|||+-+
T Consensus 168 LtkSTPEGARDfLVPSRv~~G~F---YALPQSPQlfKQLLMvsGfdRYyQIarCFRDEDlRaDRQPEFTQiD~EmSF~~~ 244 (585)
T COG0173 168 LTKSTPEGARDFLVPSRVHPGKF---YALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDLEMSFVDE 244 (585)
T ss_pred cccCCCccccccccccccCCCce---eecCCCHHHHHHHHHHhcccceeeeeeeecccccccccCCcceeEeEEeecCCH
Confidence 99999 9999 88998874333 67999999999986 56676644 7888732
Q ss_pred ---------------CCCcccCCCCCceeeeHHHHHHHHhCCC
Q psy11418 504 ---------------GSPVEIDFTPPFRRLHMFPALEAALGVK 531 (553)
Q Consensus 504 ---------------~~~~~~~~~~~f~rit~~eA~~~~~g~~ 531 (553)
.....+++..||+||||.|||++|+-=+
T Consensus 245 edv~~~~E~l~~~vf~~~~~i~l~~pFprmtY~eAm~~YGSDK 287 (585)
T COG0173 245 EDVMELIEKLLRYVFKEVKGIELKTPFPRMTYAEAMRRYGSDK 287 (585)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCCCcccccHHHHHHHhCCCC
Confidence 1233477788999999999999997443
|
|
| >PRK00476 aspS aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-30 Score=283.65 Aligned_cols=199 Identities=22% Similarity=0.378 Sum_probs=162.3
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC---------CCceeEEeeeEEEEeccCCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK---------KGELSIIPKKLTLLSPCLHMLP 395 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~---------~g~~El~~~~i~vl~~~~~~~P 395 (553)
|..+-++.+.+|++++. . ++.+..++.|+.||+|.|+|+|.+++ +|++||.+++++||++|. ++|
T Consensus 37 Fi~LrD~~g~iQ~v~~~----~-~~~~~~~~~l~~es~V~V~G~v~~~~~~~~n~~~~~g~~El~~~~i~il~~a~-~lP 110 (588)
T PRK00476 37 FIDLRDREGIVQVVFDP----D-AEAFEVAESLRSEYVIQVTGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSK-TLP 110 (588)
T ss_pred EEEEEeCCceEEEEEeC----C-HHHHHHHhCCCCCCEEEEEEEEEecCCcccCccCCCCcEEEEEeEEEEEecCC-CCC
Confidence 45667778889998874 1 45667889999999999999998754 788999999999999998 788
Q ss_pred ccccC--CCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcceeeeeecCC-CC
Q psy11418 396 HMHFG--VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHHN-DL 471 (553)
Q Consensus 396 ~~~~~--~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~~~~~~t~~~-~~ 471 (553)
+...+ ..++++|+++|||||| ++.++++|++||.+++++|+||+++||+||+||+|++++ +||+- |.+... +.
T Consensus 111 ~~~~~~~~~~~~~Rl~~R~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~ega~~--f~v~~~~~~ 187 (588)
T PRK00476 111 FPIDDEEDVSEELRLKYRYLDLR-RPEMQKNLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTPEGARD--YLVPSRVHP 187 (588)
T ss_pred CcccccccCChhhhhhcceEeec-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeeecCCCCCCcc--ceecccccC
Confidence 77643 3578999999999999 999999999999999999999999999999999999887 77753 222221 45
Q ss_pred CcceeEEeChhHHHHHh-ccCcceEe---------------cCCCCCCCC------------------------CcccCC
Q psy11418 472 NMDLYMRIAPELYLKST-HGSYKVTY---------------HPDGPESGS------------------------PVEIDF 511 (553)
Q Consensus 472 ~~~~yL~~Spel~~k~l-~~~~~~~~---------------~~e~~~~~~------------------------~~~~~~ 511 (553)
+..+||++|||+|+|++ +++++++| +|||+|+.. ....++
T Consensus 188 ~~~~~L~qSpql~kq~l~~~g~~rvfqi~~~FR~E~~~~~r~~EFt~le~e~af~~~~dvm~~~E~li~~i~~~~~~~~~ 267 (588)
T PRK00476 188 GKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDIEMSFVTQEDVMALMEGLIRHVFKEVLGVDL 267 (588)
T ss_pred CceeecCCCHHHHHHHHHhcccCceEEEeceeecCCCCCCcCcccccceeeecCCCHHHHHHHHHHHHHHHHHHHhCccC
Confidence 66778999999999985 57777655 789987510 112356
Q ss_pred CCCceeeeHHHHHHHHhCCCCC
Q psy11418 512 TPPFRRLHMFPALEAALGVKLP 533 (553)
Q Consensus 512 ~~~f~rit~~eA~~~~~g~~~~ 533 (553)
..||+||||.|||++| |.|-+
T Consensus 268 ~~pf~r~ty~ea~~~y-g~dkP 288 (588)
T PRK00476 268 PTPFPRMTYAEAMRRY-GSDKP 288 (588)
T ss_pred CCCceEEEHHHHHHHH-CCCCC
Confidence 7899999999999999 56544
|
|
| >PTZ00385 lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-30 Score=282.67 Aligned_cols=172 Identities=33% Similarity=0.585 Sum_probs=147.0
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccC--CCC--Cc--cc
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCL--HML--PH--MH 398 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~--~~~--P~--~~ 398 (553)
|..+-++.+++|++++.......+.+....+.|+.||+|.|+|.+.++++|++||.++++++|+++. .+. |. .+
T Consensus 127 F~~LrD~~G~IQvv~~~~~~~~~~~~~~~~~~l~~gdiV~V~G~v~~t~~GeleI~~~~i~lLska~~~~~~~~p~~~k~ 206 (659)
T PTZ00385 127 FVTIRSNGNELQVVGQVGEHFTREDLKKLKVSLRVGDIIGADGVPCRMQRGELSVAASRMLILSPYVCTDQVVCPNLRGF 206 (659)
T ss_pred EEEEEECCceEEEEEECCccCCHHHHHHHHhCCCCCCEEEEEEEEEecCCceEEEEeeEEEEechhhhccccCCCCCccc
Confidence 4556678889999987643222334444556899999999999999999999999999999999964 221 22 34
Q ss_pred cCCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEE
Q psy11418 399 FGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMR 478 (553)
Q Consensus 399 ~~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~ 478 (553)
++..+.++|+++||||||+|+.++++|++||+++++||+||+++||+||+||+|+++++|+++.||.|++++|+.++||+
T Consensus 207 ~~~~d~e~R~r~RyLDL~~n~~~~~ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~t~~n~~~~~~yL~ 286 (659)
T PTZ00385 207 TVLQDNDVKYRYRFTDMMTNPCVIETIKKRHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFVTHHNANAMDLFLR 286 (659)
T ss_pred cccCChhhhcccceeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccCCCCCccceEeecccCCCCEEec
Confidence 56779999999999999889999999999999999999999999999999999988889999999999999999999999
Q ss_pred eChhHHHHHh-ccCcceEe
Q psy11418 479 IAPELYLKST-HGSYKVTY 496 (553)
Q Consensus 479 ~Spel~~k~l-~~~~~~~~ 496 (553)
||||||+|+| +++++++|
T Consensus 287 ~SPELylKrLivgG~erVy 305 (659)
T PTZ00385 287 VAPELHLKQCIVGGMERIY 305 (659)
T ss_pred CChHHHHHHHhhcccCCEE
Confidence 9999999987 47777755
|
|
| >PRK02983 lysS lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-30 Score=301.05 Aligned_cols=171 Identities=39% Similarity=0.641 Sum_probs=154.7
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCCh
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK 404 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~~ 404 (553)
|-.+-++.+.+|++++.... ..+.+..+.+.|+.||+|.|+|++.++++|++||.+++|+|+++|..++|.++++..++
T Consensus 671 F~~lrD~~g~iQ~v~~~~~~-~~~~~~~~~~~l~~gd~V~v~G~v~~t~~ge~ei~~~~i~ll~k~~~plP~k~~~~~d~ 749 (1094)
T PRK02983 671 FADLRDWSGELQVLLDASRL-EQGSLADFRAAVDLGDLVEVTGTMGTSRNGTLSLLVTSWRLAGKCLRPLPDKWKGLTDP 749 (1094)
T ss_pred EEEEEeCCeeEEEEEECCcc-chhhHHHHHhcCCCCCEEEEEEEEEEcCCCCEEEEEeEEEEEeccCcCCCCccccCCCh
Confidence 55677888899999876433 23345556678999999999999999999999999999999999999999999999999
Q ss_pred hhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhHH
Q psy11418 405 ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELY 484 (553)
Q Consensus 405 e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel~ 484 (553)
++|+++||||||+|+.++++|++||+++++||+||+++||+|||||+|+++.|||++.||.|++++|+.++||+||||||
T Consensus 750 e~R~r~R~lDL~~n~~~~~~~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~gGa~a~pF~t~~~~~~~~~yLriSPELy 829 (1094)
T PRK02983 750 EARVRQRYLDLAVNPEARDLLRARSAVVRAVRETLVARGFLEVETPILQQVHGGANARPFVTHINAYDMDLYLRIAPELY 829 (1094)
T ss_pred hhcchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCEeeccCCCcccceeEeeecCCCccchhhcChHHH
Confidence 99999999999989999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHh-ccCcceEe
Q psy11418 485 LKST-HGSYKVTY 496 (553)
Q Consensus 485 ~k~l-~~~~~~~~ 496 (553)
+|+| .++++++|
T Consensus 830 lKrLivgG~erVF 842 (1094)
T PRK02983 830 LKRLCVGGVERVF 842 (1094)
T ss_pred HHHHHhcccCceE
Confidence 9996 47777755
|
|
| >PLN02903 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-29 Score=280.15 Aligned_cols=197 Identities=20% Similarity=0.337 Sum_probs=160.3
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccC---------CCCceeEEeeeEEEEeccCCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT---------KKGELSIIPKKLTLLSPCLHMLP 395 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~---------~~g~~El~~~~i~vl~~~~~~~P 395 (553)
|..+-++.+.+|++++... .+++...++.|+.||+|.|+|+|... ++|++||.+++++||++|..++|
T Consensus 92 FidLRD~~G~iQvV~~~~~---~~~~~~~~~~L~~esvV~V~G~V~~r~~~~~n~~~~tGeiEl~~~~i~VL~~a~~~lP 168 (652)
T PLN02903 92 FLDVRDHTGIVQVVTLPDE---FPEAHRTANRLRNEYVVAVEGTVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLP 168 (652)
T ss_pred EEEEEcCCccEEEEEeCCc---cHHHHHHHhcCCCCCEEEEEEEEEeCCCcCcCCCCCCCCEEEEEeEEEEEecCCCCCC
Confidence 5677788889999987532 24567788999999999999999753 36889999999999999977777
Q ss_pred ccccC------CCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHh-CCcEEeeCceeeccC-CCcc--eeeee
Q psy11418 396 HMHFG------VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDS-LGFLEVETPMMNMIA-GGAT--AKPFV 465 (553)
Q Consensus 396 ~~~~~------~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~-~~F~EV~TPiL~~~~-~ga~--~~~~~ 465 (553)
+...+ ..++++|+++|||||| ++.++++|++||.++++||+||.+ +||+||+||+|++++ +||. +.|..
T Consensus 169 f~i~~~~~~~~~~~ee~Rl~~RyLDLR-~~~~q~~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~eGardf~v~~~ 247 (652)
T PLN02903 169 FLVTTADEQKDSIKEEVRLRYRVLDLR-RPQMNANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSR 247 (652)
T ss_pred ccccccccccccCChhhhhccceeecC-CHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCCCCCcccEEeee
Confidence 76543 3578999999999999 999999999999999999999997 999999999999888 7776 33332
Q ss_pred ecCCCCCcceeEEeChhHHHHHh-ccCcceEe---------------cCCCCCCCC------------------------
Q psy11418 466 THHNDLNMDLYMRIAPELYLKST-HGSYKVTY---------------HPDGPESGS------------------------ 505 (553)
Q Consensus 466 t~~~~~~~~~yL~~Spel~~k~l-~~~~~~~~---------------~~e~~~~~~------------------------ 505 (553)
. +.+..+||++|||||+|++ +++++++| +|||+|+..
T Consensus 248 ~---~~g~~y~L~qSPQlykQ~Lm~~G~~RvFqIa~~FR~E~~~t~RhpEFTqLE~E~sf~d~~dvm~~~E~li~~v~~~ 324 (652)
T PLN02903 248 V---QPGTFYALPQSPQLFKQMLMVSGFDRYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLEDMLKLNEDLIRQVFKE 324 (652)
T ss_pred c---CCCcccccCCCHHHHHHHHHhccCCcEEEEehhhccCCCCCCcccceeeeeeeecCCCHHHHHHHHHHHHHHHHHH
Confidence 1 1255678999999999985 57777655 789987510
Q ss_pred CcccCCCCCceeeeHHHHHHHHh
Q psy11418 506 PVEIDFTPPFRRLHMFPALEAAL 528 (553)
Q Consensus 506 ~~~~~~~~~f~rit~~eA~~~~~ 528 (553)
...+++..||+||||.|||++|+
T Consensus 325 ~~~~~~~~PF~rity~eA~~~yg 347 (652)
T PLN02903 325 IKGVQLPNPFPRLTYAEAMSKYG 347 (652)
T ss_pred HhCCCCCCCceEEEHHHHHHHHc
Confidence 11245667999999999999986
|
|
| >PLN02532 asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=276.90 Aligned_cols=216 Identities=12% Similarity=0.069 Sum_probs=169.4
Q ss_pred HhcccccCCC--cccccccccccChHHHHHhhcccCCccEEEEEcccccCC----CCceeEEeeeEEEEeccC-CCCCcc
Q psy11418 325 ISGRKEDRNR--PCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK----KGELSIIPKKLTLLSPCL-HMLPHM 397 (553)
Q Consensus 325 i~~~~~~~~~--iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~----~g~~El~~~~i~vl~~~~-~~~P~~ 397 (553)
|..|-++.+. +||+++.... ...+.|+.|++|.|+|+|+.+. +|++||.+++++||+++. .++|+.
T Consensus 137 FI~LrDGSg~~~lQvVv~~~~~-------~~~~~L~~Es~V~V~G~V~~~~~~~~~g~iEl~v~~i~VLg~a~~~p~Pi~ 209 (633)
T PLN02532 137 YLLISDGSCVASLQVVVDSALA-------PLTQLMATGTCILAEGVLKLPLPAQGKHVIELEVEKILHIGTVDPEKYPLS 209 (633)
T ss_pred EEEEECCCCccceEEEEeCCcc-------cHhhcCCCceEEEEEEEEEecCCCCCCCcEEEEeeEEEEEecCCCCCCccc
Confidence 4556667676 8888864211 1126899999999999998762 789999999999999875 578877
Q ss_pred ccCCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcc-eeeeeec--------
Q psy11418 398 HFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGAT-AKPFVTH-------- 467 (553)
Q Consensus 398 ~~~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~-~~~~~t~-------- 467 (553)
... ...|+++++||||+| ++.++++|++||.++++||+||+++||+||+||+|++++ +||. +|++.|.
T Consensus 210 ~k~-~~~E~LR~~RhLdLR-t~~~~ailRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s~~EGa~elF~v~t~~~~~~~~~ 287 (633)
T PLN02532 210 KKR-LPLDMLRDFSHFRPR-TTTVASVTRVRSALTHATHTFFQDHGFLYVQVPIITTTDATGFGEMFRVTTLLGKSDDKE 287 (633)
T ss_pred ccc-CCHHHHhhCcceecC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCccccccceecccccccccc
Confidence 555 456777799999999 999999999999999999999999999999999999999 5544 8777652
Q ss_pred -----------------------------------------------------------------------------CCC
Q psy11418 468 -----------------------------------------------------------------------------HND 470 (553)
Q Consensus 468 -----------------------------------------------------------------------------~~~ 470 (553)
.+|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~dy 367 (633)
T PLN02532 288 EKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTNQLASQLEAKEKLKTGTSVKADKLSFSKDF 367 (633)
T ss_pred ccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 248
Q ss_pred CCcceeEEeChhHHHHHhccCcceEe----------------cCCCCCC----------------------------CC-
Q psy11418 471 LNMDLYMRIAPELYLKSTHGSYKVTY----------------HPDGPES----------------------------GS- 505 (553)
Q Consensus 471 ~~~~~yL~~Spel~~k~l~~~~~~~~----------------~~e~~~~----------------------------~~- 505 (553)
||.++||++|||||+|+++++++++| .+||+|+ ..
T Consensus 368 Fg~~ayLtqS~QLylE~~~~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~d~~dvM~l~E~lI~~v~k~v~~~~ 447 (633)
T PLN02532 368 FSRPTYLTVSGRLHLESYACALGNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFSELEDAMNCAEDYFKFLCKWVLENC 447 (633)
T ss_pred CCCCeeeccCHHHHHHHHHHhcCceEEEccceecCCCCCCcccccccceeeeehhcCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999988887765 6677753 00
Q ss_pred --C---------------cccCCCCCceeeeHHHHHHHH---hCC----CCCCCCCCChHHHHHHHhC
Q psy11418 506 --P---------------VEIDFTPPFRRLHMFPALEAA---LGV----KLPNPTEFDTPEANKFLSD 549 (553)
Q Consensus 506 --~---------------~~~~~~~~f~rit~~eA~~~~---~g~----~~~~~~~~~~~~~~~~~~~ 549 (553)
. ....+.+||+||||.||++.+ .|. ++.++.+++++.+..+++.
T Consensus 448 ~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~~~~~e~~~~~g~dL~~e~Er~L~~~ 515 (633)
T PLN02532 448 SEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFETKPEWGIALTTEHLSYLADE 515 (633)
T ss_pred hhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhcCCCcccccccCCccChHHHHHHHHH
Confidence 0 011345799999999999733 332 2456667888888877765
|
|
| >PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-29 Score=280.89 Aligned_cols=200 Identities=20% Similarity=0.349 Sum_probs=160.4
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccC---------CCCceeEEeeeEEEEeccCCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT---------KKGELSIIPKKLTLLSPCLHMLP 395 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~---------~~g~~El~~~~i~vl~~~~~~~P 395 (553)
|..+.++.+.+|++++... ..++++..+++|+.||+|.|+|.|.+. ++|++||.+++++||++|. ++|
T Consensus 38 FidLRD~~G~iQvV~~~~~--~~~~~~~~~~~L~~EsvV~V~G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~-~lP 114 (706)
T PRK12820 38 FIHLRDRNGFIQAVFSPEA--APADVYELAASLRAEFCVALQGEVQKRLEETENPHIETGDIEVFVRELSILAASE-ALP 114 (706)
T ss_pred EEEEEeCCccEEEEEeCCc--CCHHHHHHHhcCCCCCEEEEEeEEeccCccccCCCCCCCcEEEEeeEEEEEecCC-CCC
Confidence 5677788889999987543 235677888999999999999999763 2589999999999999986 344
Q ss_pred ccccC-------------CCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcc-
Q psy11418 396 HMHFG-------------VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGAT- 460 (553)
Q Consensus 396 ~~~~~-------------~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~- 460 (553)
+...+ ..++++|+++|||||| ++.++++|++||.++++||+||+++||+||+||+|++++ +||.
T Consensus 115 ~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR-~~~~~~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~eGAr~ 193 (706)
T PRK12820 115 FAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIR-RPAMQDHLAKRHRIIKCARDFLDSRGFLEIETPILTKSTPEGARD 193 (706)
T ss_pred CCCcccccccccccccccccCHhhhhhCceeecC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCCCCCcc
Confidence 43322 2468999999999999 999999999999999999999999999999999999887 7776
Q ss_pred -eeeeeecCCCCCcce-eEEeChhHHHHHh-ccCcceEe---------------cCCCCCCCC-----------------
Q psy11418 461 -AKPFVTHHNDLNMDL-YMRIAPELYLKST-HGSYKVTY---------------HPDGPESGS----------------- 505 (553)
Q Consensus 461 -~~~~~t~~~~~~~~~-yL~~Spel~~k~l-~~~~~~~~---------------~~e~~~~~~----------------- 505 (553)
++|.. +++.++ +|++|||||+|++ +++++++| +|||+|+..
T Consensus 194 ~~~p~~----~~~~~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR~E~~~t~r~pEFT~LE~E~af~d~~dvm~l~E~l 269 (706)
T PRK12820 194 YLVPSR----IHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFRDEDLRPNRQPEFTQLDIEASFIDEEFIFELIEEL 269 (706)
T ss_pred eEEeee----cCCCcceecCCCHHHHHHHHHhccCCcEEEEechhcCCCCCCCcCccccccceeeccCCHHHHHHHHHHH
Confidence 44544 344444 4999999999996 57777655 789987510
Q ss_pred ------CcccCCCCCceeeeHHHHHHHHhCCCCC
Q psy11418 506 ------PVEIDFTPPFRRLHMFPALEAALGVKLP 533 (553)
Q Consensus 506 ------~~~~~~~~~f~rit~~eA~~~~~g~~~~ 533 (553)
...+++..||+||||.|||++| |.|=+
T Consensus 270 i~~v~~~~~~~~~~pf~r~ty~eA~~~y-G~DKP 302 (706)
T PRK12820 270 TARMFAIGGIALPRPFPRMPYAEAMDTT-GSDRP 302 (706)
T ss_pred HHHHHHhcCcCCCCCceEEEHHHHHHHh-CCCCC
Confidence 1134666899999999999999 55533
|
|
| >PLN02850 aspartate-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-29 Score=273.97 Aligned_cols=217 Identities=18% Similarity=0.241 Sum_probs=168.9
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEccccc------CCCCceeEEeeeEEEEeccCCCCCccc
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK------TKKGELSIIPKKLTLLSPCLHMLPHMH 398 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~------~~~g~~El~~~~i~vl~~~~~~~P~~~ 398 (553)
|-.+-++.+.+|+++........++++.++.+|+.||+|.|+|+|++ +.++++||.+++|.||++|..++|++.
T Consensus 101 Fl~Lrd~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~a~~~lP~~~ 180 (530)
T PLN02850 101 FLVLRQSGFTVQCVVFVSEVTVSKGMVKYAKQLSRESVVDVEGVVSVPKKPVKGTTQQVEIQVRKIYCVSKALATLPFNV 180 (530)
T ss_pred EEEEEeCCcCEEEEEECCccccCHHHHHHHhCCCCCCEEEEEEEEEccCcCCCCCCccEEEEEeEEEEEeCCCCCCCCCh
Confidence 44566677889988765432234678899999999999999999973 346789999999999999988899876
Q ss_pred cC-------------------CCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--C
Q psy11418 399 FG-------------------VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--G 457 (553)
Q Consensus 399 ~~-------------------~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ 457 (553)
.+ ..+.++|+++|||||| ++.++++|++||.++++||+||.++||+||+||+|+.++ |
T Consensus 181 ~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR-~~~~qaifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~eg 259 (530)
T PLN02850 181 EDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLR-TPANQAIFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGASEG 259 (530)
T ss_pred hhcccccccccccccccccccccChhhhhcchhhhhc-CHHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCCcc
Confidence 53 1357899999999999 999999999999999999999999999999999998776 6
Q ss_pred CcceeeeeecCCCCCcceeEEeChhHHHHHh-ccCcceEe----------------cCCCCCCCC---------------
Q psy11418 458 GATAKPFVTHHNDLNMDLYMRIAPELYLKST-HGSYKVTY----------------HPDGPESGS--------------- 505 (553)
Q Consensus 458 ga~~~~~~t~~~~~~~~~yL~~Spel~~k~l-~~~~~~~~----------------~~e~~~~~~--------------- 505 (553)
|+..|.+. |||.++||++|||||+|++ +++++++| .+||+|+..
T Consensus 260 ga~~F~v~----yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~s~t~RHl~EFt~Le~Em~~~~~y~evm~~~ 335 (530)
T PLN02850 260 GSAVFRLD----YKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVV 335 (530)
T ss_pred ccceeeec----cCCcceecCCCHHHHHHHHHHhcCCceEEEecccccCCCCCCccchhhccchhhhhhhcCHHHHHHHH
Confidence 66655554 8999999999999999996 46676655 577876410
Q ss_pred ---------------Ccc---c---------CCCCCceeeeHHHHHHH--HhCCCCCCCCCCChHHHHHH
Q psy11418 506 ---------------PVE---I---------DFTPPFRRLHMFPALEA--ALGVKLPNPTEFDTPEANKF 546 (553)
Q Consensus 506 ---------------~~~---~---------~~~~~f~rit~~eA~~~--~~g~~~~~~~~~~~~~~~~~ 546 (553)
... + .+..+|.|++|.||+.- -.|+++.+..+++++....+
T Consensus 336 E~ll~~i~~~l~~~~~~el~~i~~~~~~~~~~~~~~~~rit~~ea~~~L~~~g~~~~~~~dl~~~~E~~L 405 (530)
T PLN02850 336 DELFVAIFDGLNERCKKELEAIREQYPFEPLKYLPKTLRLTFAEGIQMLKEAGVEVDPLGDLNTESERKL 405 (530)
T ss_pred HHHHHHHHHHHHhhhhhhHHhhcccCCcchhhhcCCcccCCHHHHHHHHHHcCCCCCCCCCcchHHHHHH
Confidence 000 1 11235569999998763 35777666666666655544
|
|
| >PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-29 Score=269.18 Aligned_cols=174 Identities=13% Similarity=0.156 Sum_probs=143.1
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC--CCceeEEeeeEEEEeccCCCCCccccCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSIIPKKLTLLSPCLHMLPHMHFGVK 402 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~--~g~~El~~~~i~vl~~~~~~~P~~~~~~~ 402 (553)
|..+.++.+.+|+++.... .++.+..++.|+.||+|.|+|.+.+++ +|++||.+++++||+++..++|+..+. .
T Consensus 36 Fi~lrD~~g~iq~~~~~~~---~~~~~~~~~~l~~~s~v~v~G~v~~~~~~~~~~el~~~~i~vl~~~~~~~p~~~~~-~ 111 (450)
T PRK03932 36 FLQLRDGSCFKQLQVVKDN---GEEYFEEIKKLTTGSSVIVTGTVVESPRAGQGYELQATKIEVIGEDPEDYPIQKKR-H 111 (450)
T ss_pred EEEEECCCCcEEEEEEcCC---ChHHHHHHhcCCCCcEEEEEEEEEcCCCCCCCEEEEEEEEEEccCCCCCCCCCccc-c
Confidence 4566677777777765432 245677788999999999999998876 578999999999999987677865443 4
Q ss_pred ChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecC-------CCCCcce
Q psy11418 403 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHH-------NDLNMDL 475 (553)
Q Consensus 403 ~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~-------~~~~~~~ 475 (553)
+.++++++||||+| ++.++++|++||.+++++|+||+++||+||+||+|+.+++++...+|.+++ +|||.++
T Consensus 112 ~~~~~~~~r~l~lR-~~~~~~~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~ 190 (450)
T PRK03932 112 SIEFLREIAHLRPR-TNKFGAVMRIRNTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEA 190 (450)
T ss_pred ChHHHhhCceeecc-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCceeccCCCCCCCceEeecccccccccccCCCc
Confidence 56889999999999 899999999999999999999999999999999999887333334454432 6999999
Q ss_pred eEEeChhHHHHHhccCcceEe----------------cCCCCCC
Q psy11418 476 YMRIAPELYLKSTHGSYKVTY----------------HPDGPES 503 (553)
Q Consensus 476 yL~~Spel~~k~l~~~~~~~~----------------~~e~~~~ 503 (553)
||++|||||+|+++++++++| .|||+|+
T Consensus 191 ~L~~Spql~lq~l~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~l 234 (450)
T PRK03932 191 YLTVSGQLYAEAYAMALGKVYTFGPTFRAENSNTRRHLAEFWMI 234 (450)
T ss_pred ccccCHHHHHHHHHhccCCeEEeeeccccCCCCCcccccccccc
Confidence 999999999999987776644 6888875
|
|
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-29 Score=253.43 Aligned_cols=122 Identities=50% Similarity=0.907 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccc
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFR 290 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR 290 (553)
|++||.|++++|+||.++||+||+||+|+..++|+++++|.+....+|.++||++|||+|+|+++++|++|||+||||||
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR 80 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNFR 80 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEeeecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEeccee
Confidence 47899999999999999999999999998766677789999865456999999999999999999999999999999999
Q ss_pred cCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcccccC
Q psy11418 291 NEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDR 332 (553)
Q Consensus 291 ~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~~ 332 (553)
+|..+.+|++||||||+|++|+|++|+|+++|++|+++++.+
T Consensus 81 ~e~~~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~ 122 (269)
T cd00669 81 NEDLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREV 122 (269)
T ss_pred CCCCCCCcccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHH
Confidence 997788999999999999999999999999999999997544
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >PTZ00401 aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=269.11 Aligned_cols=166 Identities=20% Similarity=0.318 Sum_probs=141.8
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEccccc-------CCCCceeEEeeeEEEEeccCCCCCcc
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK-------TKKGELSIIPKKLTLLSPCLHMLPHM 397 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~-------~~~g~~El~~~~i~vl~~~~~~~P~~ 397 (553)
|-.+-++.+.+|++++... ...+++..++..|+.||+|.|+|+|++ +.+|++||.+++++||++|..++|+.
T Consensus 98 Fl~LRd~~~~iQ~v~~~~~-~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~~~~~~El~v~~i~vls~a~~~lP~~ 176 (550)
T PTZ00401 98 FMVLRDGSDSVQAMAAVEG-DVPKEMIDFIGQIPTESIVDVEATVCKVEQPITSTSHSDIELKVKKIHTVTESLRTLPFT 176 (550)
T ss_pred EEEEEeCCcCEEEEEECCC-ccCHHHHHHHhcCCCCCEEEEEEEEEecCccCCCCCCccEEEEeeEEEEEeCCCCCCCCC
Confidence 4456678888998876432 134678899999999999999999875 33788999999999999998889987
Q ss_pred ccCC----------CChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcceeeee
Q psy11418 398 HFGV----------KDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKPFV 465 (553)
Q Consensus 398 ~~~~----------~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~~~~~ 465 (553)
..+. .+.++|+++|||||| ++.++++|++||.++++||+||.++||+||+||+|+.++ ||+..|.+.
T Consensus 177 ~~d~~~~~~~~~~~~~~dtrl~~R~LdlR-~~~~~~i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~egga~~F~v~ 255 (550)
T PTZ00401 177 LEDASRKESDEGAKVNFDTRLNSRWMDLR-TPASGAIFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVFKLE 255 (550)
T ss_pred cccccccccccccccChhhhhhhhhhhhc-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCCCccccccccc
Confidence 6442 257899999999999 999999999999999999999999999999999999876 678887765
Q ss_pred ecCCCCCcceeEEeChhHHHHHhc-cCcceEe
Q psy11418 466 THHNDLNMDLYMRIAPELYLKSTH-GSYKVTY 496 (553)
Q Consensus 466 t~~~~~~~~~yL~~Spel~~k~l~-~~~~~~~ 496 (553)
|||.++||++|||||+|++. |+++++|
T Consensus 256 ----yf~~~~~L~qSpql~kq~li~~g~~rVf 283 (550)
T PTZ00401 256 ----YFNRFAYLAQSPQLYKQMVLQGDVPRVF 283 (550)
T ss_pred ----cCCCCeecCCCHHHHHHHHHhcCCCCEE
Confidence 99999999999999999985 5676654
|
|
| >COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-29 Score=259.96 Aligned_cols=169 Identities=20% Similarity=0.264 Sum_probs=150.4
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC--CCceeEEeeeEEEEeccCCCCCccccCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSIIPKKLTLLSPCLHMLPHMHFGVK 402 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~--~g~~El~~~~i~vl~~~~~~~P~~~~~~~ 402 (553)
|..+-++.+.+|++++..+. .++.+. +++|+.||+|.|+|+|++++ ++++||.+++++|++.+..++|++..+.+
T Consensus 36 Fi~lrDgsg~iQ~v~~~~~~--~~~~~~-~~~L~~es~v~V~G~v~~~~~a~~g~El~v~~i~Vl~~a~~~~Pi~~~~~~ 112 (435)
T COG0017 36 FLVLRDGSGFIQAVVPKNKV--YEELFK-AKKLTLESSVVVTGIVKASPKAPQGFELQVEKIEVLGEADPPYPIDKKEHS 112 (435)
T ss_pred EEEEEcCCcEEEEEEECCCC--cHHHhh-hhcCCCccEEEEEEEEEcCCCCCCCEEEEEEEEEEeeccCCCCCcCccccc
Confidence 44566888889988875322 355666 89999999999999999887 88999999999999999668999888777
Q ss_pred ChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcceeeeeecCCCCCcceeEEeC
Q psy11418 403 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKPFVTHHNDLNMDLYMRIA 480 (553)
Q Consensus 403 ~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~~~~~t~~~~~~~~~yL~~S 480 (553)
+.++++++|||++| ++..+++|++||.+++++|+||+++||+||+||+|++++ ||+.+|++. ||+.++||++|
T Consensus 113 ~~e~lld~rhL~lR-~~~~~Av~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~EGg~elF~v~----yf~~~a~LtqS 187 (435)
T COG0017 113 ELETLLDNRHLDLR-TPKIQAVFKIRSSILRAIREFFYENGFTEVHTPIITASATEGGGELFKVD----YFDKEAYLTQS 187 (435)
T ss_pred CHHHHHhchheecc-ccchHHHHhHHHHHHHHHHHHHHhCCcEEecCceEeccCCCCCceeEEEe----ecCcceEEecC
Confidence 89999999999999 999999999999999999999999999999999999999 556799999 99999999999
Q ss_pred hhHHHHHhccCcceEe--cCCCC
Q psy11418 481 PELYLKSTHGSYKVTY--HPDGP 501 (553)
Q Consensus 481 pel~~k~l~~~~~~~~--~~e~~ 501 (553)
||||++.++.+++++| .|.|+
T Consensus 188 ~QLyke~~~~al~rVf~igP~FR 210 (435)
T COG0017 188 PQLYKEALAAALERVFTIGPTFR 210 (435)
T ss_pred HHHHHHHHHHHhCceEEecCcee
Confidence 9999999998899988 55554
|
|
| >TIGR00457 asnS asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=263.39 Aligned_cols=221 Identities=16% Similarity=0.169 Sum_probs=170.7
Q ss_pred HhcccccC--CCcccccccccccChHHHHHhhcccCCccEEEEEcccccC--CCCceeEEeeeEEEEeccC-CCCCcccc
Q psy11418 325 ISGRKEDR--NRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT--KKGELSIIPKKLTLLSPCL-HMLPHMHF 399 (553)
Q Consensus 325 i~~~~~~~--~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~--~~g~~El~~~~i~vl~~~~-~~~P~~~~ 399 (553)
|-.+-++. +.+|++++.. ..++++..++.|+.||+|.|+|.+.++ .++++||.+++++||++|. .++|++..
T Consensus 36 F~~lrD~~~~g~iQ~v~~~~---~~~~~~~~~~~l~~gs~V~v~G~v~~~~~~~~~~El~~~~i~vl~~~~~~~~P~~~~ 112 (453)
T TIGR00457 36 FLELNDGSSLGPIQAVINGE---DNPYLFQLLKSLTTGSSVSVTGKVVESPGKGQPVELQVKKIEVVGEAEPDDYPLQKK 112 (453)
T ss_pred EEEEECCCCCccEEEEEeCC---cChHHHHHHHcCCCCcEEEEEEEEEcCCCCCCCEEEEEeEEEEEecCCccCCCCCcc
Confidence 34455666 7899888753 134667788999999999999999876 4789999999999999997 56787654
Q ss_pred CCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CC-cceeeeeec-----CCCCC
Q psy11418 400 GVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GG-ATAKPFVTH-----HNDLN 472 (553)
Q Consensus 400 ~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~g-a~~~~~~t~-----~~~~~ 472 (553)
. .+.++++++|||++| ++.++++|++||.+++++|+||+++||+||+||+|+.++ +| +..|++.+. .+|||
T Consensus 113 ~-~~~~~~~~~r~l~lR-~~~~~~~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~eg~~~~F~v~~~~~~~~~~~~~ 190 (453)
T TIGR00457 113 E-HSLEFLRDIAHLRLR-TNTLGAVMRVRNALSQAIHRYFQENGFTWVSPPILTSNDCEGAGELFRVSTDGIDFSQDFFG 190 (453)
T ss_pred c-cChhhHhhCcceecC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCeEeecCCCCCCCceEecccccccchhccC
Confidence 4 466889999999999 999999999999999999999999999999999999887 33 335555431 33899
Q ss_pred cceeEEeChhHHHHHhccCcceEe----------------cCCCCCCCC-----------------------------C-
Q psy11418 473 MDLYMRIAPELYLKSTHGSYKVTY----------------HPDGPESGS-----------------------------P- 506 (553)
Q Consensus 473 ~~~yL~~Spel~~k~l~~~~~~~~----------------~~e~~~~~~-----------------------------~- 506 (553)
.++||++|||||+|+++++++++| .|||+|+.. .
T Consensus 191 ~~~yL~~Spql~lq~l~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~~~~~dvm~~~E~lv~~i~~~~~~~~~~ 270 (453)
T TIGR00457 191 KEAYLTVSGQLYLETYALALSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFANLNDLLQLAETLIKYIIKAVLENCSQ 270 (453)
T ss_pred CccccccCHHHHHHHHhhcccCceEeeeccccCCCCCCcCcchhccceeeeecCCHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999987776644 578886400 0
Q ss_pred ----cccCC------------CCCceeeeHHHHHHHHhCC------CCCCCCCCChHHHHHHHhCC
Q psy11418 507 ----VEIDF------------TPPFRRLHMFPALEAALGV------KLPNPTEFDTPEANKFLSDP 550 (553)
Q Consensus 507 ----~~~~~------------~~~f~rit~~eA~~~~~g~------~~~~~~~~~~~~~~~~~~~~ 550 (553)
...++ +.||+||||.||++..... +..++.+++.+.+..+++.+
T Consensus 271 ~~~~~~~~~~~~~~~~l~~~~~~~~~rit~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~L~~~~ 336 (453)
T TIGR00457 271 ELKFLEKNFDKDLIKRLENIINNKFARITYTDAIEILKESDKNFEYEDFWGDDLQTEHERFLAEEY 336 (453)
T ss_pred HHHHhhccCCchHHHHHHHhcCCCCceeEHHHHHHHHHhcCCCCcCCCCCCCCCCcHHHHHHHHHh
Confidence 01112 1379999999998855432 22344566777777777654
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn. |
| >PLN02221 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=267.52 Aligned_cols=216 Identities=13% Similarity=0.126 Sum_probs=167.0
Q ss_pred HhcccccC--CCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC-----CCceeEEeeeEEEEeccC-CCCCc
Q psy11418 325 ISGRKEDR--NRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-----KGELSIIPKKLTLLSPCL-HMLPH 396 (553)
Q Consensus 325 i~~~~~~~--~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~-----~g~~El~~~~i~vl~~~~-~~~P~ 396 (553)
|-.+-++. +.+|++++... ....+.|+.|++|.|+|+|+.++ +|++||.+++++|||++. .++|+
T Consensus 72 Fl~LRDgs~~g~iQvVv~~~~-------~~~~~~L~~ES~V~V~G~V~~~~~~~~~~~~iEl~v~~i~vl~~a~~~~~Pi 144 (572)
T PLN02221 72 FLEVNDGSCPANLQVMVDSSL-------YDLSTLVATGTCVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYPL 144 (572)
T ss_pred EEEEeCCcccccEEEEEcCch-------hhHHhcCCCceEEEEEEEEEeCCccCCCCccEEEEEeEEEEEecCCCCCCCC
Confidence 34556666 68898886421 12224689999999999997654 569999999999999986 47887
Q ss_pred cccCCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcceeeeeec-------
Q psy11418 397 MHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKPFVTH------- 467 (553)
Q Consensus 397 ~~~~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~~~~~t~------- 467 (553)
... ..+.++++++|||++| ++.++++||+||.++++||+||.++||+||+||+|+.++ ||+.+|++.|.
T Consensus 145 ~~~-~~~~e~lrr~~hLR~R-~~~~~Ai~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~ 222 (572)
T PLN02221 145 PKT-KLTLEFLRDVLHLRSR-TNSISAVARIRNALAFATHSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERL 222 (572)
T ss_pred CCC-cCChHHHhhcchhhcC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeeccccCCCCccceeeeecccccccc
Confidence 654 3467888999999999 999999999999999999999999999999999999999 55668888542
Q ss_pred -------------------------------------------------------------------------------C
Q psy11418 468 -------------------------------------------------------------------------------H 468 (553)
Q Consensus 468 -------------------------------------------------------------------------------~ 468 (553)
.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (572)
T PLN02221 223 EQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASKEEITAAVAELKIAKESLAHIEERSKLKPGLPKKDGKIDYSK 302 (572)
T ss_pred cccccccCcccchhhhhhhhhhhhhcchhhhhhccccchhhhhhhhhhhhhhhhhhhhhhhhhhcccCCccccccccccc
Confidence 1
Q ss_pred CCCCcceeEEeChhHHHHHhccCcceEe----------------cCCCCCCC----------------------------
Q psy11418 469 NDLNMDLYMRIAPELYLKSTHGSYKVTY----------------HPDGPESG---------------------------- 504 (553)
Q Consensus 469 ~~~~~~~yL~~Spel~~k~l~~~~~~~~----------------~~e~~~~~---------------------------- 504 (553)
+|||.++||++|||||+|+++++++++| .+||+|+.
T Consensus 303 dyFg~~ayLtqS~QLy~e~~~~~l~rVfeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~d~~dvm~l~E~lv~~i~~~l~~ 382 (572)
T PLN02221 303 DFFGRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKYMCKWLLD 382 (572)
T ss_pred ccCCCCeeeccCHHHHHHHHHHhcCCeEEEccceecCCCCCCcccccccceeeeeecCCHHHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999999987777755 66777640
Q ss_pred C---Cc-----ccC----------CCCCceeeeHHHHHHHH-----hCCC----CCCCCCCChHHHHHHHhC
Q psy11418 505 S---PV-----EID----------FTPPFRRLHMFPALEAA-----LGVK----LPNPTEFDTPEANKFLSD 549 (553)
Q Consensus 505 ~---~~-----~~~----------~~~~f~rit~~eA~~~~-----~g~~----~~~~~~~~~~~~~~~~~~ 549 (553)
. .. ..+ +..||+||||.||++.. .|.+ +.++.+++++.+..+.+.
T Consensus 383 ~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIty~EAi~~L~~~~~~g~~~~~~~~~G~dl~~e~Er~L~~~ 454 (572)
T PLN02221 383 KCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEV 454 (572)
T ss_pred hhHHHHHHHhhhcCchhhhhhhhccCCCceEEEHHHHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHH
Confidence 0 00 011 45699999999999844 2433 234556666776666554
|
|
| >cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-28 Score=250.53 Aligned_cols=121 Identities=29% Similarity=0.561 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCC-CcceeeeeCHHHHHHHHHHccCCcEEEEcccc
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDL-NMDLYMRIAPELYLKMLVVGGLDRVYEVGRQF 289 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~-~~~~~L~~Spql~lk~l~~~g~~rVfei~~~F 289 (553)
+++||+|++++|+||.++||+||+||+|+++.+++ +.+|.+..... +..+||++|||||||+|+++|++|||+|||||
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g-~~~f~~~~~~~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~f 79 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEG-ARDFLVPSRLHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCF 79 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCCC-CCCceeccccCCCceeecccCHHHHHHHHHhcCcCcEEEeccce
Confidence 47899999999999999999999999998544332 35698765443 44566999999999999999999999999999
Q ss_pred ccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcccccC
Q psy11418 290 RNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDR 332 (553)
Q Consensus 290 R~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~~ 332 (553)
|+|+++++|++||||||||++|+|++|+|+++|++|+++++.+
T Consensus 80 R~e~~~~~r~~Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~ 122 (280)
T cd00777 80 RDEDLRADRQPEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEV 122 (280)
T ss_pred eCCCCCCCccceeEEeEeeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999888899999999999999999999999999987543
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. |
| >PTZ00425 asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=261.00 Aligned_cols=218 Identities=13% Similarity=0.125 Sum_probs=169.3
Q ss_pred HhcccccCC--CcccccccccccChHHHHHhhcccCCccEEEEEcccccCC----------CCceeEEe-----eeEEEE
Q psy11418 325 ISGRKEDRN--RPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK----------KGELSIIP-----KKLTLL 387 (553)
Q Consensus 325 i~~~~~~~~--~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~----------~g~~El~~-----~~i~vl 387 (553)
|..+-++.+ .+|++.+.. ...+..+++|+.|++|.|+|+++.++ ++++||.+ ++++||
T Consensus 103 Fv~lrDgsg~~~iQiVv~~~-----~~~~~~l~~l~~gs~v~v~G~v~~~~~~~~n~~g~~~~~~El~~~~~~~~~~~il 177 (586)
T PTZ00425 103 FVNLNDGSCHLNLQIIVDQS-----IENYEKLLKCGVGCCFRFTGKLIISPVQNENKKGLLKENVELALKDNSIHNFEIY 177 (586)
T ss_pred EEEEECCCCCcceEEEECCc-----hHHHHHHhcCCCccEEEEEEEEEcCCccccCcCCCCCccEEEEEecCCCceEEEE
Confidence 445555655 488776531 22345678899999999999997643 35699998 799999
Q ss_pred eccC--CCCCccccCCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcc-eee
Q psy11418 388 SPCL--HMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGAT-AKP 463 (553)
Q Consensus 388 ~~~~--~~~P~~~~~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~-~~~ 463 (553)
+++. .++|+... ....|+++++||||+| ++.++++||+||.+..++|+||.++||+||+||+|++++ +||+ +|+
T Consensus 178 g~~~d~~~yPi~~k-~~~~e~lr~~rhL~lR-~~~~~avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~~EGa~elF~ 255 (586)
T PTZ00425 178 GENLDPQKYPLSKK-NHGKEFLREVAHLRPR-SYFISSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDCEGGGEMFT 255 (586)
T ss_pred eccCCCCCCCCCCc-cCChhhhhhccceecc-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCCCcceEE
Confidence 9884 36787654 3568999999999999 999999999999999999999999999999999999999 5554 788
Q ss_pred eeec-----------------------------------------------------------CCCCCcceeEEeChhHH
Q psy11418 464 FVTH-----------------------------------------------------------HNDLNMDLYMRIAPELY 484 (553)
Q Consensus 464 ~~t~-----------------------------------------------------------~~~~~~~~yL~~Spel~ 484 (553)
+.|. .+|||+++||++|||||
T Consensus 256 V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~yF~k~ayL~~S~QLy 335 (586)
T PTZ00425 256 VTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNANNNNGNSSSSNAVSSPAYPDQYLIDYKKDFFSKQAFLTVSGQLS 335 (586)
T ss_pred eeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCcceEEEcCchHH
Confidence 7542 15999999999999999
Q ss_pred HHHhccCcceEe----------------cCCCCCC----------------------------CC-Ccc---------cC
Q psy11418 485 LKSTHGSYKVTY----------------HPDGPES----------------------------GS-PVE---------ID 510 (553)
Q Consensus 485 ~k~l~~~~~~~~----------------~~e~~~~----------------------------~~-~~~---------~~ 510 (553)
+|+++++++++| .+||+|+ .. ... .+
T Consensus 336 lE~~~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li~~v~~~vl~~~~~~i~~~~~~~~~~ 415 (586)
T PTZ00425 336 LENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADLYDNMELAESYIKYCIGYVLNNNFDDIYYFEENVETG 415 (586)
T ss_pred HHHHHhccCCEEEEeceEeCCCCCCCCCCcccceEEEEEecCCHHHHHHHHHHHHHHHHHHHhccccccccccccccccc
Confidence 999998888766 4677753 00 000 11
Q ss_pred --------CCCCceeeeHHHHHHHH------hCCCCCCCCCCChHHHHHHHhC
Q psy11418 511 --------FTPPFRRLHMFPALEAA------LGVKLPNPTEFDTPEANKFLSD 549 (553)
Q Consensus 511 --------~~~~f~rit~~eA~~~~------~g~~~~~~~~~~~~~~~~~~~~ 549 (553)
+..||+||||.||++.. .+.++.++.+++++.+..+++.
T Consensus 416 l~~~l~~~~~~pf~rIty~EAi~iL~~~~~~~~~~~~~G~dL~~e~Er~L~~~ 468 (586)
T PTZ00425 416 LISRLKNILDEDFAKITYTNVIDLLQPYSDSFEVPVKWGMDLQSEHERFVAEQ 468 (586)
T ss_pred HHHHHHHhcCCCCCcCCHHHHHHHHHHhHHhcCCCCCcccccchHHHHHHHHH
Confidence 24689999999998754 2445677778888888777765
|
|
| >PRK09350 poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-28 Score=252.83 Aligned_cols=124 Identities=32% Similarity=0.521 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCeEEEecceecccc-CCCCCcceeeccC----CCCcceeeeeCHHHHHHHHHHccCCcE
Q psy11418 208 RHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHHN----DLNMDLYMRIAPELYLKMLVVGGLDRV 282 (553)
Q Consensus 208 ~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~-gga~a~~F~t~~~----~~~~~~~L~~Spql~lk~l~~~g~~rV 282 (553)
..+|++|+.|++.+|+||.++||+||+||+|+..+ +++.+.||.++.. ..|..+||++|||+++|+++++|++||
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la~~~~rv 81 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAGSGPI 81 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCceeeeeccccccCCcceEEecCHHHHHHHHhhccccce
Confidence 46899999999999999999999999999997543 5667889987633 337999999999999999999999999
Q ss_pred EEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhccccc
Q psy11418 283 YEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKED 331 (553)
Q Consensus 283 fei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~ 331 (553)
|+||||||+|+++.+|++||||+|||++|+|++|+|+++|+||+++++.
T Consensus 82 f~i~~~FR~e~~~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~~ 130 (306)
T PRK09350 82 FQICKSFRNEEAGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC 130 (306)
T ss_pred EEecceeecCCCCCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999998899999999999999999999999999999999753
|
|
| >PLN02603 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=260.00 Aligned_cols=219 Identities=11% Similarity=0.110 Sum_probs=168.9
Q ss_pred HhcccccCC--CcccccccccccChHHHHHhhc--ccCCccEEEEEcccccCCC--CceeEEeeeEEEEeccCCCCCccc
Q psy11418 325 ISGRKEDRN--RPCVMANARMYQSEEEFASDLV--KIKRGDIIGVTGSPGKTKK--GELSIIPKKLTLLSPCLHMLPHMH 398 (553)
Q Consensus 325 i~~~~~~~~--~iqv~~n~r~~~~~e~~~~~~~--~L~~gs~V~V~G~v~~~~~--g~~El~~~~i~vl~~~~~~~P~~~ 398 (553)
|..|-++.. .+|++++.. ... +..+. .|+.||+|.|+|++++++. +++||.+++++||++|..++|+..
T Consensus 127 Fi~l~Dgs~~~~lQ~v~~~~----~~~-~~~l~~~~l~~gs~V~V~G~v~~~~~~~~~~EL~v~~i~vlg~a~~~~Pi~~ 201 (565)
T PLN02603 127 FIEVNDGSCLSNMQCVMTPD----AEG-YDQVESGLITTGASVLVQGTVVSSQGGKQKVELKVSKIVVVGKSDPSYPIQK 201 (565)
T ss_pred EEEEECCCCCEeEEEEEECc----HHH-HHHHhhcCCCCCCEEEEEEEEEecCCCCccEEEEEeEEEEEECCCCCCCCcc
Confidence 455656554 588887542 122 33333 4999999999999988774 459999999999999988899865
Q ss_pred cCCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcc-eeeeee----------
Q psy11418 399 FGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGAT-AKPFVT---------- 466 (553)
Q Consensus 399 ~~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~-~~~~~t---------- 466 (553)
.. ...++++.++||++| ++.+++++|+||.+++++|+||.++||+||+||+|++++ |||+ .|++.|
T Consensus 202 ~~-~s~e~lr~~~hLr~R-t~~~~ai~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~ 279 (565)
T PLN02603 202 KR-VSREFLRTKAHLRPR-TNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGG 279 (565)
T ss_pred cc-cchhhhhhhhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeecccCCCccccCceeeecccccccccc
Confidence 44 456888899999999 999999999999999999999999999999999999998 6666 666643
Q ss_pred ----------------cCCCCCcceeEEeChhHHHHHhccCcceEe----------------cCCCCCCCC---------
Q psy11418 467 ----------------HHNDLNMDLYMRIAPELYLKSTHGSYKVTY----------------HPDGPESGS--------- 505 (553)
Q Consensus 467 ----------------~~~~~~~~~yL~~Spel~~k~l~~~~~~~~----------------~~e~~~~~~--------- 505 (553)
..+|||.++||++|||||+|.++++++++| .+||+|+..
T Consensus 280 ~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~~E~~~~~l~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~dl~d 359 (565)
T PLN02603 280 SLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETYATALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLND 359 (565)
T ss_pred ccccccccCcccccccchhhhCcceeeccCchHHHHHHHhcccceEEEecceeCCCCCCccccccceeeeeeeecCCHHH
Confidence 125899999999999999999988877755 467776400
Q ss_pred --------------------CcccC-----------------CCCCceeeeHHHHHHHHh------CCCCCCCCCCChHH
Q psy11418 506 --------------------PVEID-----------------FTPPFRRLHMFPALEAAL------GVKLPNPTEFDTPE 542 (553)
Q Consensus 506 --------------------~~~~~-----------------~~~~f~rit~~eA~~~~~------g~~~~~~~~~~~~~ 542 (553)
...++ ...||.||||.||++-.. +..+.++.+++++.
T Consensus 360 ~m~~~E~~l~~~~~~v~~~~~~el~~~~~~~~~~~~~~l~~~~~~~f~rity~EAi~iL~~~~~~~~~~~~~g~dl~~e~ 439 (565)
T PLN02603 360 DMACATAYLQYVVKYILENCKEDMEFFNTWIEKGIIDRLSDVVEKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEH 439 (565)
T ss_pred HHHHHHHHHHHHHHHHHcccHhHHHhcCCcccccHHHHHHHhcCCCCCCCCHHHHHHHHHHhccccCCCCCccccccHHH
Confidence 00111 134899999999987442 23456667888888
Q ss_pred HHHHHhCC
Q psy11418 543 ANKFLSDP 550 (553)
Q Consensus 543 ~~~~~~~~ 550 (553)
+..+++..
T Consensus 440 Er~L~~~~ 447 (565)
T PLN02603 440 ERYITEEA 447 (565)
T ss_pred HHHHHHHh
Confidence 88777654
|
|
| >KOG0556|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-26 Score=232.69 Aligned_cols=213 Identities=22% Similarity=0.294 Sum_probs=171.8
Q ss_pred ccCCCcccccc-cccccChHHHHHhhcccCCccEEEEEcccccCC-------CCceeEEeeeEEEEeccCCCCCccccCC
Q psy11418 330 EDRNRPCVMAN-ARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-------KGELSIIPKKLTLLSPCLHMLPHMHFGV 401 (553)
Q Consensus 330 ~~~~~iqv~~n-~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~-------~g~~El~~~~i~vl~~~~~~~P~~~~~~ 401 (553)
+....+|+++. +.......+|..+.+.|..||+|.|.|.|.+.+ .+.+||++.++.+|+.+...+|+...+.
T Consensus 107 q~~~tVQ~~~~~~~~~~isk~Mvkf~~~is~ESiV~v~g~v~k~~~~i~scT~qdvEi~v~~iyviS~a~~~LPl~veDa 186 (533)
T KOG0556|consen 107 QQGSTVQCLVAVNEDGTISKQMVKFAGSISKESIVDVRGVVVKVKEPIKSCTVQDVEIHVRKIYVISIALPNLPLQVEDA 186 (533)
T ss_pred ccCceEEEEEEcCCCchHHHHHHHHHhhcCcceEEEEEEEEecCCCcccccccceeEEEEEEEEEEecccccCCeeehhh
Confidence 34444554442 222234568999999999999999999997654 5689999999999999999999865431
Q ss_pred -------------------CChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcc
Q psy11418 402 -------------------KDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGAT 460 (553)
Q Consensus 402 -------------------~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~ 460 (553)
.+.++|+++|.|||| +|..+++|++.+.++.++|+||..+||+||+||.|..++ |||+
T Consensus 187 srse~~eE~a~~~~~~~~~Vn~dtRLdnRvlDLR-tptnqAiFriq~gvc~~FRe~L~~kgF~EIhTpKli~asSEGGan 265 (533)
T KOG0556|consen 187 SRSEPDEEKAAEPESTLARVNLDTRLDNRVLDLR-TPTNQAIFRIQAGVCFAFREYLRSKGFVEIHTPKLIGASSEGGAN 265 (533)
T ss_pred cccccchhhhcCCccccceecccccccceeeecc-cccchheeehHHHHHHHHHHHHHhcCcceecccccccccCCCCce
Confidence 255899999999999 999999999999999999999999999999999999887 8899
Q ss_pred eeeeeecCCCCCcceeEEeChhHHHHHh-ccCcceEecC------CCCC----------C--------------------
Q psy11418 461 AKPFVTHHNDLNMDLYMRIAPELYLKST-HGSYKVTYHP------DGPE----------S-------------------- 503 (553)
Q Consensus 461 ~~~~~t~~~~~~~~~yL~~Spel~~k~l-~~~~~~~~~~------e~~~----------~-------------------- 503 (553)
+|.+. ||+.++||.+|||||+||+ +|+|.++|.+ |... +
T Consensus 266 vF~v~----Yfk~~A~LAQSPQLyKQMaI~gdf~rVyeIGpVfRAEdSnthRhltEFvGLD~EMaf~~hYhEVm~~i~~l 341 (533)
T KOG0556|consen 266 VFRVS----YFKQKAYLAQSPQLYKQMAICGDFERVYEIGPVFRAEDSNTHRHLTEFVGLDLEMAFNEHYHEVMDTIGEL 341 (533)
T ss_pred eEEEE----eccCcchhhcChHHHHHHHHhcchhheeeecceeeccccchhhhhHHhhCcchhhHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999986 7888887722 2110 0
Q ss_pred ----------------------CCCcccCCCCCceeeeHHHHHH--HHhCCCCCCCCCCChHHHHHHH
Q psy11418 504 ----------------------GSPVEIDFTPPFRRLHMFPALE--AALGVKLPNPTEFDTPEANKFL 547 (553)
Q Consensus 504 ----------------------~~~~~~~~~~~f~rit~~eA~~--~~~g~~~~~~~~~~~~~~~~~~ 547 (553)
++.....|.+|--|++|.|++. +-+|+++.+.+|++|+.+.++.
T Consensus 342 fv~IF~~l~ery~~Eie~Vr~qyp~e~fkf~~~~lrl~~~e~v~mLreaGvE~g~~dDlsTe~Ek~LG 409 (533)
T KOG0556|consen 342 FVFIFKGLRERYAKEIETVRKQYPFEPFKFLEPPLRLTFKEGVAMLREAGVEMGDEDDLSTESEKKLG 409 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCceEeehHHHHHHHHHcCcccCCccccCChhHHHHH
Confidence 2223334445666999999866 7789999999999998877654
|
|
| >COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-24 Score=212.44 Aligned_cols=120 Identities=35% Similarity=0.588 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccccCC-CCCcceeecc----CCCCcceeeeeCHHHHHHHHHHccCCcEEE
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGG-ATAKPFVTHH----NDLNMDLYMRIAPELYLKMLVVGGLDRVYE 284 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gg-a~a~~F~t~~----~~~~~~~~L~~Spql~lk~l~~~g~~rVfe 284 (553)
.+..|+.|+.+||.||.++||+||+||.|+..++. ....+|.|.. ..-..++||+.|||.++|+|+++|-+++|+
T Consensus 15 ~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag~~~ifq 94 (322)
T COG2269 15 NLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAGSGPIFQ 94 (322)
T ss_pred HHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEeccCccccceeeeecCcHHHHHHHHHccCCcchh
Confidence 47899999999999999999999999999866543 4678898842 233688999999999999999999999999
Q ss_pred EccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhccc
Q psy11418 285 VGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRK 329 (553)
Q Consensus 285 i~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~ 329 (553)
||+||||+.....|+|||||||||..+.||.-+|+.+.++++.++
T Consensus 95 l~kvfRN~E~G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl 139 (322)
T COG2269 95 LGKVFRNEEMGRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVL 139 (322)
T ss_pred hhHHHhcccccccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998884
|
|
| >cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-23 Score=180.18 Aligned_cols=108 Identities=56% Similarity=0.740 Sum_probs=98.1
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEE
Q psy11418 92 TLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLT 171 (553)
Q Consensus 92 ~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~ 171 (553)
+|+|+|||+++|.+| +++|++|+|+++.+|+|++.+.. +++.|..+.+.|++||+|.|+|++.++++|++||.+++++
T Consensus 1 ~v~v~GwV~~~R~~g-~~~Fi~lrd~~~~lQ~v~~~~~~-~~~~~~~~~~~l~~g~~V~v~G~v~~~~~g~~El~~~~~~ 78 (108)
T cd04322 1 EVSVAGRIMSKRGSG-KLSFADLQDESGKIQVYVNKDDL-GEEEFEDFKKLLDLGDIIGVTGTPFKTKTGELSIFVKEFT 78 (108)
T ss_pred CEEEEEEEEEEecCC-CeEEEEEEECCeEEEEEEECCCC-CHHHHHHHHhcCCCCCEEEEEEEEEecCCCCEEEEeCEeE
Confidence 389999999999999 79999999999999999987654 4566765555599999999999999999999999999999
Q ss_pred EeccCCCCCCCCCCCCCCcchhhcccchhh
Q psy11418 172 LLSPCLHMLPHMHFGVKDKETRFRQRYLDL 201 (553)
Q Consensus 172 il~~~~~~lP~~~~~l~~~e~r~~~R~ldl 201 (553)
|+|+|+.|+|.+.++..+.++|+++|||||
T Consensus 79 ils~~~~plP~~~~~~~~~~~r~~~R~ldl 108 (108)
T cd04322 79 LLSKSLRPLPEKFHGLTDVETRYRQRYLDL 108 (108)
T ss_pred EeeccCCCCCCCccCcCChhheeecccccC
Confidence 999999999998888889999999999996
|
These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein |
| >KOG2411|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=211.62 Aligned_cols=195 Identities=22% Similarity=0.344 Sum_probs=154.1
Q ss_pred cccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccC---------CCCceeEEeeeEEEEeccCCCCCcc
Q psy11418 327 GRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT---------KKGELSIIPKKLTLLSPCLHMLPHM 397 (553)
Q Consensus 327 ~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~---------~~g~~El~~~~i~vl~~~~~~~P~~ 397 (553)
-+.+..+.+|++..+..+. ........++.+|+|.|+|++... ++|.+|+.++++++++++...+|+.
T Consensus 69 ~LRD~~G~vq~lls~~s~~---l~~~~~~~v~~e~vv~v~gtvv~Rp~~sin~km~tg~vev~~e~~~vln~~~~~~p~~ 145 (628)
T KOG2411|consen 69 NLRDAYGIVQQLLSPDSFP---LAQKLENDVPLEDVVQVEGTVVSRPNESINSKMKTGFVEVVAEKVEVLNPVNKKLPFE 145 (628)
T ss_pred EeeccCcceEEEecchhhh---HHhcccCCCChhheEeeeeeEecccccccCccccccceEEEeeeeEEecCccCCCccc
Confidence 3556677888877764321 123445668999999999998533 3889999999999999999889986
Q ss_pred ccCC------CChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCceeeccC-CCcce--eeeeec
Q psy11418 398 HFGV------KDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSL-GFLEVETPMMNMIA-GGATA--KPFVTH 467 (553)
Q Consensus 398 ~~~~------~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~-~F~EV~TPiL~~~~-~ga~~--~~~~t~ 467 (553)
..+. ..+.+|+++|||||| +|+|+..|++||.+...||+||.++ ||+||+||+|...+ |||.- +|.++.
T Consensus 146 v~df~~ld~~~~er~rl~~RyldLR-~~kmq~nLrlRS~~v~~iR~yl~n~~GFvevETPtLFkrTPgGA~EFvVPtr~~ 224 (628)
T KOG2411|consen 146 VTDFKELDDLAGERIRLRFRYLDLR-RPKMQNNLRLRSNVVKKIRRYLNNRHGFVEVETPTLFKRTPGGAREFVVPTRTP 224 (628)
T ss_pred hhhhhhhhccccccccchhhhhhhc-cHHHHHHHHHHHHHHHHHHHHHhhhcCeeeccCcchhccCCCccceeecccCCC
Confidence 6543 367899999999999 9999999999999999999999775 59999999999999 99994 455544
Q ss_pred CCCCCcceeEEeChhHHHHHh-ccCcceEe---------------cCCCCCC------------------------CCCc
Q psy11418 468 HNDLNMDLYMRIAPELYLKST-HGSYKVTY---------------HPDGPES------------------------GSPV 507 (553)
Q Consensus 468 ~~~~~~~~yL~~Spel~~k~l-~~~~~~~~---------------~~e~~~~------------------------~~~~ 507 (553)
. |.=+-|-+|||.|+|.| +|++++.| .|||+-+ ....
T Consensus 225 ~---g~FYaLpQSPQQfKQlLMvsGidrYyQiARCfRDEdlR~DRQPEFTQvD~EMsF~~~~dim~liEdll~~~ws~~k 301 (628)
T KOG2411|consen 225 R---GKFYALPQSPQQFKQLLMVSGIDRYYQIARCFRDEDLRADRQPEFTQVDMEMSFTDQEDIMKLIEDLLRYVWSEDK 301 (628)
T ss_pred C---CceeecCCCHHHHHHHHHHhchhhHHhHHhhhcccccCcccCCcceeeeeEEeccCHHHHHHHHHHHHHHhchhhc
Confidence 2 44467999999999997 56665533 7888721 1223
Q ss_pred ccCCCCCceeeeHHHHHHHHh
Q psy11418 508 EIDFTPPFRRLHMFPALEAAL 528 (553)
Q Consensus 508 ~~~~~~~f~rit~~eA~~~~~ 528 (553)
.+.+..||+||||+|||++|+
T Consensus 302 ~~~l~~PF~riTY~~Am~~YG 322 (628)
T KOG2411|consen 302 GIQLPVPFPRITYADAMDKYG 322 (628)
T ss_pred CCCCCCCcccccHHHHHHHhC
Confidence 345667999999999999996
|
|
| >KOG0554|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-22 Score=202.85 Aligned_cols=207 Identities=14% Similarity=0.138 Sum_probs=164.4
Q ss_pred CCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC--CCceeEEeeeEEEEeccCCCCCccccCCCChhhhccc
Q psy11418 333 NRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQ 410 (553)
Q Consensus 333 ~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~--~g~~El~~~~i~vl~~~~~~~P~~~~~~~~~e~~~~~ 410 (553)
..+||+.+. ...+.+..|++|.|+|.+..++ .+++|+.++++.+++.+..++|.+.. ...+++.++.
T Consensus 50 ~~lQvVv~~----------~~~q~la~Gt~i~~~g~l~~~~~~~q~iel~~eki~~vG~v~~~ypl~Kk-~lt~e~LR~~ 118 (446)
T KOG0554|consen 50 SPLQVVVDS----------EQSQLLATGTCISAEGVLKVSKGAKQQIELNAEKIKVVGTVDESYPLQKK-KLTPEMLRDK 118 (446)
T ss_pred cceEEEech----------HHhhhccccceEEEEeeEEeccchheeeeeeeeEEEEEeecCCCCCCccc-cCCHHHHhhc
Confidence 446777764 4567799999999999986654 66899999999999999888776644 4467999999
Q ss_pred cceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcc-eeeeeec----CCCCCcceeEEeChhHH
Q psy11418 411 RYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGAT-AKPFVTH----HNDLNMDLYMRIAPELY 484 (553)
Q Consensus 411 R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~-~~~~~t~----~~~~~~~~yL~~Spel~ 484 (553)
-||+.| +..+.+++|+||.+..++|+||.++||++|+||||+.++ +||+ +|.+.|. .+|||+++||++|.|||
T Consensus 119 ~HLR~R-t~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DCEGaGE~F~vtt~~d~~~~fFg~p~fLTVSgQLh 197 (446)
T KOG0554|consen 119 LHLRSR-TAKVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDCEGAGEVFQVTTLTDYSKDFFGRPAFLTVSGQLH 197 (446)
T ss_pred ccccch-hhHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCCCCCcceEEEEecCcccccccCCceEEEEeceeh
Confidence 999999 999999999999999999999999999999999999999 7766 8877764 45999999999999999
Q ss_pred HHHhccCcceEe--cCCCC--------------CC------------------------------C-------------C
Q psy11418 485 LKSTHGSYKVTY--HPDGP--------------ES------------------------------G-------------S 505 (553)
Q Consensus 485 ~k~l~~~~~~~~--~~e~~--------------~~------------------------------~-------------~ 505 (553)
++.++.+++++| .|.|+ |+ . +
T Consensus 198 lE~~a~~LsrvyTfgP~FRAEnS~tsRHLAEFwMlEaE~AF~~sl~d~m~~~e~~~K~mik~llek~~edmel~~k~~~~ 277 (446)
T KOG0554|consen 198 LEAMACALSRVYTFGPTFRAENSHTSRHLAEFWMLEAELAFAESLDDLMSCAEAYIKHMIKYLLEKCIEDMELMHKNEDP 277 (446)
T ss_pred HHHHHhhhcceEeeccceecccCCchhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhheeccccCC
Confidence 999999998877 44443 21 0 0
Q ss_pred C----cccCCCCCceeeeHHHHHHHHh-------CCCCCCCCCCChHHHHHHHhCCC
Q psy11418 506 P----VEIDFTPPFRRLHMFPALEAAL-------GVKLPNPTEFDTPEANKFLSDPN 551 (553)
Q Consensus 506 ~----~~~~~~~~f~rit~~eA~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~ 551 (553)
. ..-.+..+|.+|||.||++... ...+.++.++.++.+..+++-++
T Consensus 278 ~~~~rl~~~~~~~~~~~tYteAie~L~~a~t~~fk~~~kwG~~l~~ehe~yL~~~~~ 334 (446)
T KOG0554|consen 278 GSIDRLELVAKENLLRITYTEAIELLQKAVTKKFKTPPKWGIDLSTEHEKYLVEECF 334 (446)
T ss_pred CccchhhhhccchhhhccHHHHHHHHHHhcccccccCcccccccchhhHHHHHHHhc
Confidence 0 0011124578999999988332 34456777888888888776553
|
|
| >PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-21 Score=203.46 Aligned_cols=130 Identities=28% Similarity=0.442 Sum_probs=101.2
Q ss_pred ChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CC-cceeeeeec-CCCCCcceeEEe
Q psy11418 403 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GG-ATAKPFVTH-HNDLNMDLYMRI 479 (553)
Q Consensus 403 ~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~g-a~~~~~~t~-~~~~~~~~yL~~ 479 (553)
++|+++++|||++| ++.++++|++||.++++||+||+++||+||+||+|++++ +| +..|++.+. ..+||.++||++
T Consensus 1 ~~e~~~~~r~l~~r-~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~ 79 (335)
T PF00152_consen 1 DEETRLDNRHLDLR-TPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQ 79 (335)
T ss_dssp -HHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-S
T ss_pred Chhhhhhccceecc-CcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcccceecCc
Confidence 46899999999999 999999999999999999999999999999999999999 44 555555532 558999999999
Q ss_pred ChhHHHHHhccC-cceEe----------------cCCCCCCC------------------------CCc--------ccC
Q psy11418 480 APELYLKSTHGS-YKVTY----------------HPDGPESG------------------------SPV--------EID 510 (553)
Q Consensus 480 Spel~~k~l~~~-~~~~~----------------~~e~~~~~------------------------~~~--------~~~ 510 (553)
|||||||++..+ ++++| .|||+|+. ... .++
T Consensus 80 Spql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~~~~~~~~~~~~~~~ 159 (335)
T PF00152_consen 80 SPQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFKELLENAKELSLNID 159 (335)
T ss_dssp SSHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred ChHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHHHHHHHHHHHHHhccCcccccccc
Confidence 999999998433 66655 66787640 000 456
Q ss_pred CCCCceeeeHHHHHHHHhCCCCC
Q psy11418 511 FTPPFRRLHMFPALEAALGVKLP 533 (553)
Q Consensus 511 ~~~~f~rit~~eA~~~~~g~~~~ 533 (553)
+..||+|++|.||++.|++.++.
T Consensus 160 ~~~~f~ri~~~ea~~~~~~~~~~ 182 (335)
T PF00152_consen 160 LPKPFPRITYEEAFEIYGGDKPD 182 (335)
T ss_dssp SSSS-EEEEHHHHHHHHHHTTTT
T ss_pred ccCCceEeeehHHHHHhhccccc
Confidence 77789999999999999998743
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B .... |
| >PRK06462 asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-20 Score=194.92 Aligned_cols=144 Identities=19% Similarity=0.246 Sum_probs=111.3
Q ss_pred CChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-----CCcceeeeee-cCCCCCcce
Q psy11418 402 KDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-----GGATAKPFVT-HHNDLNMDL 475 (553)
Q Consensus 402 ~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-----~ga~~~~~~t-~~~~~~~~~ 475 (553)
.+.+.++++|++++| ++.++++|++||.+++++|+||+++||+||+||+|+.++ +|+. .|+.+ +.+|||.++
T Consensus 8 ~~~~~~~~~r~~~lr-~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~-~~~~~~~~~~~~~~~ 85 (335)
T PRK06462 8 KEYEEFLRMSWKHIS-SEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSD-LPVKQISIDFYGVEY 85 (335)
T ss_pred cchhhhhhhHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCcccc-CCccccccccCCCce
Confidence 356889999999999 999999999999999999999999999999999999885 3444 66654 466899999
Q ss_pred eEEeChhHHHHHhccCcce------------------EecCCCCCCCC--------------------------------
Q psy11418 476 YMRIAPELYLKSTHGSYKV------------------TYHPDGPESGS-------------------------------- 505 (553)
Q Consensus 476 yL~~Spel~~k~l~~~~~~------------------~~~~e~~~~~~-------------------------------- 505 (553)
||++|||||++.+++++++ .|+|||+|+..
T Consensus 86 yL~~Spql~k~ll~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~~i~~~~~~~~~~~ 165 (335)
T PRK06462 86 YLADSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELLEEHEDE 165 (335)
T ss_pred eeccCHHHHHHHHHhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999999998887655543 45778887400
Q ss_pred -----CcccCCCCCceeeeHHHHHH--HHhCCCCCCCCCCChHHHHHHH
Q psy11418 506 -----PVEIDFTPPFRRLHMFPALE--AALGVKLPNPTEFDTPEANKFL 547 (553)
Q Consensus 506 -----~~~~~~~~~f~rit~~eA~~--~~~g~~~~~~~~~~~~~~~~~~ 547 (553)
....+++.||+||||.||++ ++.|++.....+++.+.+..+.
T Consensus 166 i~~~~~~~~~~~~p~~rit~~eA~~~l~~~~~~~~~~~~l~~~~E~~l~ 214 (335)
T PRK06462 166 LEFFGRDLPHLKRPFKRITHKEAVEILNEEGCRGIDLEELGSEGEKSLS 214 (335)
T ss_pred HHhcCCccccCCCCCeEEEHHHHHHHHHhcCCCcchHHHHhHHHHHHHH
Confidence 00113557999999999999 6677765554444444444443
|
|
| >cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-20 Score=192.35 Aligned_cols=144 Identities=19% Similarity=0.230 Sum_probs=113.0
Q ss_pred ChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChh
Q psy11418 403 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPE 482 (553)
Q Consensus 403 ~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spe 482 (553)
+.++++++||||+| ++..++++++||.+++++|+||.++||+||+||+|+.++.++.+.+|.+ +|||.++||++|||
T Consensus 3 ~~~~~~~~r~l~lr-~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~--~~~~~~~yL~~Spq 79 (322)
T cd00776 3 NLETLLDNRHLDLR-TPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKV--SYFGKPAYLAQSPQ 79 (322)
T ss_pred ChHhhhhCceeeeC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCcccc--ccCCCcceecCCHH
Confidence 56899999999999 9999999999999999999999999999999999999884444444443 38999999999999
Q ss_pred HHHHHhccCcce----------------EecCCCCCCCC-----------------------------------------
Q psy11418 483 LYLKSTHGSYKV----------------TYHPDGPESGS----------------------------------------- 505 (553)
Q Consensus 483 l~~k~l~~~~~~----------------~~~~e~~~~~~----------------------------------------- 505 (553)
||||++..++++ .|+|||+|+..
T Consensus 80 l~lk~l~~~~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l~~~~~~~~~~~~~~~ 159 (322)
T cd00776 80 LYKEMLIAALERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVNQLN 159 (322)
T ss_pred HHHHHHHHhhhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhccC
Confidence 999999644544 35788887510
Q ss_pred CcccCCCCCceeeeHHHHHHHHhCCCC----CCCCCCChHHHHHHHhC
Q psy11418 506 PVEIDFTPPFRRLHMFPALEAALGVKL----PNPTEFDTPEANKFLSD 549 (553)
Q Consensus 506 ~~~~~~~~~f~rit~~eA~~~~~g~~~----~~~~~~~~~~~~~~~~~ 549 (553)
....++..||+||||.||++.+.+++. .++.+++.+....+++.
T Consensus 160 ~~~~~~~~~~~rit~~eA~~~l~~~~~~~~~~~~~~l~~~~e~~l~~~ 207 (322)
T cd00776 160 RELLKPLEPFPRITYDEAIELLREKGVEEEVKWGEDLSTEHERLLGEI 207 (322)
T ss_pred cccccCCCCceEEEHHHHHHHHHHcCCCCCCCccchhcHHHHHHHHHH
Confidence 001244579999999999998887653 34445555655555543
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-19 Score=163.75 Aligned_cols=109 Identities=28% Similarity=0.404 Sum_probs=93.0
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc---------c
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT---------K 159 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t---------~ 159 (553)
.|++|+|+|||+++|.+| |++|++|+|+++.+|+++..+.. ..| ..++.|+.||+|.|+|++.+. +
T Consensus 13 ~g~~V~i~Gwv~~~R~~g-k~~Fi~LrD~~g~~Q~v~~~~~~---~~~-~~~~~l~~gs~V~V~G~~~~~~~~~~~~~~~ 87 (135)
T cd04317 13 VGQEVTLCGWVQRRRDHG-GLIFIDLRDRYGIVQVVFDPEEA---PEF-ELAEKLRNESVIQVTGKVRARPEGTVNPKLP 87 (135)
T ss_pred CCCEEEEEEeEehhcccC-CEEEEEEecCCeeEEEEEeCCch---hHH-HHHhCCCCccEEEEEEEEECCCccccCCCCC
Confidence 467899999999999999 79999999999999999986542 224 456789999999999998753 3
Q ss_pred CCceeEeeeeEEEeccCCCCCCCCCC--CCCCcchhhcccchhhhc
Q psy11418 160 KGELSIIPKKLTLLSPCLHMLPHMHF--GVKDKETRFRQRYLDLMI 203 (553)
Q Consensus 160 ~ge~~l~~~~i~il~~~~~~lP~~~~--~l~~~e~r~~~R~ldl~~ 203 (553)
+|++||.++++++|++| .++|.... +..+.++|+++||||||.
T Consensus 88 ~~~~El~~~~i~vl~~~-~~lP~~~~~~~~~~~~~r~~~R~LdLR~ 132 (135)
T cd04317 88 TGEIEVVASELEVLNKA-KTLPFEIDDDVNVSEELRLKYRYLDLRR 132 (135)
T ss_pred CCcEEEEEeEEEEEECC-CCCCCccccccCCCHHHhhhcceeecCC
Confidence 68899999999999999 78997653 345789999999999973
|
These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh |
| >KOG0555|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-19 Score=182.08 Aligned_cols=212 Identities=16% Similarity=0.180 Sum_probs=166.1
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC-----CCceeEEeeeEEEEeccCCC-CCccc
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-----KGELSIIPKKLTLLSPCLHM-LPHMH 398 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~-----~g~~El~~~~i~vl~~~~~~-~P~~~ 398 (553)
|.-+.++.+-+|++.+.+-.+ --..-.|..+++|.|-|++++.+ +|++||.++.|+|++.|+.. +-+..
T Consensus 143 FivLrdg~gflqCVl~~kl~~-----~yd~~~Ls~essv~vYG~i~~~p~GK~apgghEl~vdy~Eiig~Apag~~~n~l 217 (545)
T KOG0555|consen 143 FIVLRDGTGFLQCVLSDKLCQ-----SYDALTLSTESSVTVYGTIKKLPEGKSAPGGHELNVDYWEIIGLAPAGGFDNPL 217 (545)
T ss_pred EEEEecCCceEEEEEcchhhh-----hhccccccccceEEEEEEEecCcCCCCCCCCceEEeeeeeeecccCCCcccccc
Confidence 455667888888888753211 11234588999999999997764 78999999999999988753 33444
Q ss_pred cCCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcceeeeeecCCCCCccee
Q psy11418 399 FGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKPFVTHHNDLNMDLY 476 (553)
Q Consensus 399 ~~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~~~~~t~~~~~~~~~y 476 (553)
...++++..+++|||.+| ....+.+|+.|+.+++++|++|.+.|++||.+|+|+... ||+++|.++ |||.++|
T Consensus 218 ne~s~~~~~LdnrHl~iR-ge~~s~vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVEGGsTLFkld----YyGEeAy 292 (545)
T KOG0555|consen 218 NEESDVDVLLDNRHLVIR-GENASKVLKARAALLRAMRDHYFERGYTEVTPPTMVQTQVEGGSTLFKLD----YYGEEAY 292 (545)
T ss_pred cccCCcceEeccceeEEe-chhHHHHHHHHHHHHHHHHHHHHhcCceecCCCceEEEEecCcceEEeec----ccCchhh
Confidence 556688999999999999 999999999999999999999999999999999999998 889999999 9999999
Q ss_pred EEeChhHHHHHhccCcceEe----------------cCCCCCC-----------------------------------CC
Q psy11418 477 MRIAPELYLKSTHGSYKVTY----------------HPDGPES-----------------------------------GS 505 (553)
Q Consensus 477 L~~Spel~~k~l~~~~~~~~----------------~~e~~~~-----------------------------------~~ 505 (553)
|++|.|||++...-+++.+| -.|+++. -.
T Consensus 293 LTQSSQLYLEtclpAlgdvy~I~~SyRAEkSrTRRHLsEytHVEaE~afltfd~ll~~iE~lvc~~vdr~l~dp~~~li~ 372 (545)
T KOG0555|consen 293 LTQSSQLYLETCLPALGDVYCIQQSYRAEKSRTRRHLSEYTHVEAECAFLTFDDLLDRIEALVCDSVDRLLEDPIAPLIK 372 (545)
T ss_pred ccchhHHHHHHhhhhcCceeEecHhhhhhhhhhhhhhhhheeeeeecccccHHHHHHHHHHHHHHHHHHHHhChhhhhHH
Confidence 99999999999754444433 1122110 01
Q ss_pred CcccCCC---CCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHH
Q psy11418 506 PVEIDFT---PPFRRLHMFPALEAALGVKLPNPTEFDTPEANKF 546 (553)
Q Consensus 506 ~~~~~~~---~~f~rit~~eA~~~~~g~~~~~~~~~~~~~~~~~ 546 (553)
..+++|. .||+||.|.||+++.-..++.+.+..+.+...++
T Consensus 373 ~lnP~f~~P~~PFkRm~Y~dAI~wLke~~vk~edg~~fefGdDI 416 (545)
T KOG0555|consen 373 QLNPDFKAPKRPFKRMNYSDAIEWLKEHDVKKEDGTDFEFGDDI 416 (545)
T ss_pred HhCCCCCCCCCchhcCCHHHHHHHHHhcCCcCccCcccccccch
Confidence 2345664 4899999999999999888887665555433333
|
|
| >cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-17 Score=142.12 Aligned_cols=101 Identities=23% Similarity=0.264 Sum_probs=85.0
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc--CCceeEeeee
Q psy11418 92 TLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSIIPKK 169 (553)
Q Consensus 92 ~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~--~ge~~l~~~~ 169 (553)
+|+|+|||+++|.+| |++|++|+|+++.+|++++.+ . +++.| ...+.|+.||+|.|+|.+.+++ .+++||.+++
T Consensus 1 ~V~v~Gwv~~~R~~g-k~~Fi~lrD~~g~iQ~v~~~~-~-~~~~~-~~~~~l~~~s~v~V~G~v~~~~~~~~~~Ei~~~~ 76 (103)
T cd04319 1 KVTLAGWVYRKREVG-KKAFIVLRDSTGIVQAVFSKD-L-NEEAY-REAKKVGIESSVIVEGAVKADPRAPGGAEVHGEK 76 (103)
T ss_pred CEEEEEEEEeEEcCC-CeEEEEEecCCeeEEEEEeCC-C-CHHHH-HHHhCCCCCCEEEEEEEEEECCCCCCCEEEEEEE
Confidence 389999999999999 899999999999999999875 2 34445 4557899999999999988654 5679999999
Q ss_pred EEEeccCCCCCCCCCCCCCCcchhhcccch
Q psy11418 170 LTLLSPCLHMLPHMHFGVKDKETRFRQRYL 199 (553)
Q Consensus 170 i~il~~~~~~lP~~~~~l~~~e~r~~~R~l 199 (553)
++++++|. ++|.... .+.++++++|||
T Consensus 77 i~vl~~a~-~~pi~~~--~~~~~~~~~rhL 103 (103)
T cd04319 77 LEIIQNVE-FFPITED--ASDEFLLDVRHL 103 (103)
T ss_pred EEEEecCC-CCccCCC--CCHHHHhhccCC
Confidence 99999996 7886533 378899999996
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. |
| >cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.5e-17 Score=140.72 Aligned_cols=92 Identities=24% Similarity=0.352 Sum_probs=78.2
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccC-------Ccee
Q psy11418 92 TLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK-------GELS 164 (553)
Q Consensus 92 ~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~-------ge~~ 164 (553)
+|+|+|||+++|.+|++++|++|||+++.+|++++.+.....+.+...++.|+.||+|.|+|++.++++ |++|
T Consensus 1 ~V~i~Gwv~~~R~~g~k~~Fi~LrD~sg~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~E 80 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGYTIQGVLAASAEGVSKQMVKWAGSLSKESIVDVEGTVKKPEEPIKSCTQQDVE 80 (102)
T ss_pred CEEEEEEEEEeecCCCceEEEEEecCCceEEEEEeCCcccCCHHHHHHHhcCCCccEEEEEEEEECCCCcccCCCcCcEE
Confidence 389999999999999889999999999999999987642112334466788999999999999987644 8999
Q ss_pred EeeeeEEEeccCCCCCCCC
Q psy11418 165 IIPKKLTLLSPCLHMLPHM 183 (553)
Q Consensus 165 l~~~~i~il~~~~~~lP~~ 183 (553)
|.++++++|++|..++|..
T Consensus 81 l~~~~i~il~~~~~~~P~~ 99 (102)
T cd04320 81 LHIEKIYVVSEAAEPLPFQ 99 (102)
T ss_pred EEEEEEEEEecCCCCCCCC
Confidence 9999999999998888854
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. |
| >TIGR00462 genX lysyl-tRNA synthetase-like protein GenX | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-17 Score=168.83 Aligned_cols=124 Identities=21% Similarity=0.285 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcceeeeeecC---CCCCcceeEEeChhHHHHH-hccCcceEe---
Q psy11418 425 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHH---NDLNMDLYMRIAPELYLKS-THGSYKVTY--- 496 (553)
Q Consensus 425 l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~~~~~~t~~---~~~~~~~yL~~Spel~~k~-l~~~~~~~~--- 496 (553)
|++||.+++++|+||.++||+||+||+|+.++ +++.+.+|.|+. ++++.++||++|||||+|+ ++++++++|
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfeig 80 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQIC 80 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEEc
Confidence 57999999999999999999999999999985 445566666642 3556899999999999996 466666654
Q ss_pred ------------cCCCCCCCC-----C--------------cccCCCCCceeeeHHHHHHHHhCCCCCCCCCCChHHHHH
Q psy11418 497 ------------HPDGPESGS-----P--------------VEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANK 545 (553)
Q Consensus 497 ------------~~e~~~~~~-----~--------------~~~~~~~~f~rit~~eA~~~~~g~~~~~~~~~~~~~~~~ 545 (553)
+|||+|+.. . .-..+..||+||||.||+++++|+++... +.+++..
T Consensus 81 p~FRaE~~~~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~~~~~~~~~it~~ea~~~~~~~~~~~~---~~~~~~~ 157 (304)
T TIGR00462 81 KVFRNGERGRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGDPFAPWERLSYQEAFLRYAGIDPLTA---SLDELAA 157 (304)
T ss_pred CceeCCCCCCCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcEEEEHHHHHHHHhCCCcccC---CHHHHHH
Confidence 778877410 0 00114579999999999999999988643 3455555
Q ss_pred HHhCCC
Q psy11418 546 FLSDPN 551 (553)
Q Consensus 546 ~~~~~~ 551 (553)
++.+.|
T Consensus 158 ~~~~~g 163 (304)
T TIGR00462 158 AAAAHG 163 (304)
T ss_pred HHHHcC
Confidence 555444
|
Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown. |
| >COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-17 Score=162.71 Aligned_cols=125 Identities=25% Similarity=0.314 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcceeeeeec----CCCCCcceeEEeChhHHHHHhc--cC----
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTH----HNDLNMDLYMRIAPELYLKSTH--GS---- 491 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~~~~~~t~----~~~~~~~~yL~~Spel~~k~l~--~~---- 491 (553)
..|..|+.++++||.||.++||+||+||.|+.++ ..+.+.+|.|. .+.-+.+.||++|||++||+|. |+
T Consensus 14 ~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag~~~if 93 (322)
T COG2269 14 DNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAGSGPIF 93 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEeccCccccceeeeecCcHHHHHHHHHccCCcch
Confidence 4589999999999999999999999999999999 66779999985 2233689999999999999982 11
Q ss_pred ----------cceEecCCCCCC--CCCc----------------ccCCCCCceeeeHHHHHHHHhCCCCCCCCCCChHHH
Q psy11418 492 ----------YKVTYHPDGPES--GSPV----------------EIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEA 543 (553)
Q Consensus 492 ----------~~~~~~~e~~~~--~~~~----------------~~~~~~~f~rit~~eA~~~~~g~~~~~~~~~~~~~~ 543 (553)
-+..|+|||+|+ +... -.+ ..+++++||+|||.+|+|+|+... +..++
T Consensus 94 ql~kvfRN~E~G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~-~~~~E~ls~~eaF~r~~gid~l~~---~~~~L 169 (322)
T COG2269 94 QLGKVFRNEEMGRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLE-CVEAERLSYQEAFLRYLGIDPLSA---DKTEL 169 (322)
T ss_pred hhhHHHhcccccccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHc-cCCcceeeHHHHHHHHhCCCcccc---cHHHH
Confidence 234679999994 3210 011 246999999999999999998763 33566
Q ss_pred HHHHhCCC
Q psy11418 544 NKFLSDPN 551 (553)
Q Consensus 544 ~~~~~~~~ 551 (553)
...+...|
T Consensus 170 ~~~~~~~~ 177 (322)
T COG2269 170 REAAAKLG 177 (322)
T ss_pred HHHHHhcC
Confidence 66665554
|
|
| >cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.7e-16 Score=137.44 Aligned_cols=93 Identities=31% Similarity=0.440 Sum_probs=80.2
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc--CCceeEe
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSII 166 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~--~ge~~l~ 166 (553)
.|++|+|+|||+++|.+| +++|++|||+++.+|++++.+.. +++.| +.++.|+.||+|.|+|++.+++ .+++||.
T Consensus 11 ~g~~V~v~Gwv~~~R~~g-~~~Fi~LrD~~g~iQ~v~~~~~~-~~~~~-~~~~~l~~es~V~V~G~v~~~~~~~~~~Ei~ 87 (108)
T cd04316 11 DGEEVTVAGWVHEIRDLG-GIKFVILRDREGIVQVTAPKKKV-DKELF-KTVRKLSRESVISVTGTVKAEPKAPNGVEII 87 (108)
T ss_pred CCCEEEEEEEEEeeeccC-CeEEEEEecCCeeEEEEEeCCCC-CHHHH-HHHhCCCCcCEEEEEEEEEeCCCCCCCEEEE
Confidence 577899999999999999 89999999999999999986542 33444 5678899999999999998765 3689999
Q ss_pred eeeEEEeccCCCCCCCCC
Q psy11418 167 PKKLTLLSPCLHMLPHMH 184 (553)
Q Consensus 167 ~~~i~il~~~~~~lP~~~ 184 (553)
+++++++++|..++|.++
T Consensus 88 ~~~i~il~~~~~~~P~~~ 105 (108)
T cd04316 88 PEEIEVLSEAKTPLPLDP 105 (108)
T ss_pred EeEEEEEeCCCCCCCcCc
Confidence 999999999988898653
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes. |
| >cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-16 Score=162.71 Aligned_cols=79 Identities=63% Similarity=1.146 Sum_probs=72.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhHHHHHh-ccCcceEe
Q psy11418 418 NERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKST-HGSYKVTY 496 (553)
Q Consensus 418 ~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel~~k~l-~~~~~~~~ 496 (553)
||.++++|++||.++++||+||.++||+||+||+|+++++|+++.+|.++.++|+.++||++|||||||++ +++++++|
T Consensus 1 ~~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g~~~vf 80 (329)
T cd00775 1 NEEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVY 80 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEeccCCCCcceeeccCHHHHHHHHHhcCCCcEE
Confidence 57889999999999999999999999999999999988888888899887779999999999999999997 46777766
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-15 Score=156.38 Aligned_cols=108 Identities=23% Similarity=0.423 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcceeeeeecCCC-CCcceeEEeChhHHHHHh-ccCcceEe-----
Q psy11418 425 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHHND-LNMDLYMRIAPELYLKST-HGSYKVTY----- 496 (553)
Q Consensus 425 l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~~~~~~t~~~~-~~~~~yL~~Spel~~k~l-~~~~~~~~----- 496 (553)
|++||.++++||+||.++||+||+||+|+.++ +|+.- |.+.... .+..+||++|||||||++ +++++++|
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~--f~~~~~~~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~ 78 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARD--FLVPSRLHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARC 78 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCC--ceeccccCCCceeecccCHHHHHHHHHhcCcCcEEEeccc
Confidence 57899999999999999999999999999877 66643 4443222 244566999999999986 57777655
Q ss_pred ----------cCCCCCCCC------------------------CcccCCCCCceeeeHHHHHHHHhCCCCCCC
Q psy11418 497 ----------HPDGPESGS------------------------PVEIDFTPPFRRLHMFPALEAALGVKLPNP 535 (553)
Q Consensus 497 ----------~~e~~~~~~------------------------~~~~~~~~~f~rit~~eA~~~~~g~~~~~~ 535 (553)
++||+++.. ....++..||+||||.||++.+ |+++.+.
T Consensus 79 fR~e~~~~~r~~Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~~~~~~~~p~~rity~eA~~~~-~~~~~~~ 150 (280)
T cd00777 79 FRDEDLRADRQPEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLGVELTTPFPRMTYAEAMERY-GFKFLWI 150 (280)
T ss_pred eeCCCCCCCccceeEEeEeeeccCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCceeeHHHHHHHh-CCCCccc
Confidence 567765310 0011455799999999999987 4444433
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. |
| >PRK09350 poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-15 Score=155.61 Aligned_cols=127 Identities=22% Similarity=0.291 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcceeeeeecCC----CCCcceeEEeChhHHHHHh-ccCcceE
Q psy11418 422 RHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHHN----DLNMDLYMRIAPELYLKST-HGSYKVT 495 (553)
Q Consensus 422 ~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~~~~~~t~~~----~~~~~~yL~~Spel~~k~l-~~~~~~~ 495 (553)
..+|++|+.++++||+||.++||+||+||+|+..+ +|+.+.||.++.. ..|..+||++|||+|+|++ ++++.++
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la~~~~rv 81 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAGSGPI 81 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCceeeeeccccccCCcceEEecCHHHHHHHHhhccccce
Confidence 47899999999999999999999999999999877 7788888877521 2279999999999999975 4455544
Q ss_pred e---------------cCCCCCCCCC-----------------cccCCCCCceeeeHHHHHHHHhCCCCCCCCCCChHHH
Q psy11418 496 Y---------------HPDGPESGSP-----------------VEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEA 543 (553)
Q Consensus 496 ~---------------~~e~~~~~~~-----------------~~~~~~~~f~rit~~eA~~~~~g~~~~~~~~~~~~~~ 543 (553)
| .+||+|+... ..+--..+|++|+|.|||.+|+|+++... +.+++
T Consensus 82 f~i~~~FR~e~~~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~~~~~~~i~~~eaf~~~~g~~~~~~---~~~~~ 158 (306)
T PRK09350 82 FQICKSFRNEEAGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCEPAESLSYQQAFLRYLGIDPLSA---DKTQL 158 (306)
T ss_pred EEecceeecCCCCCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHhcCCceEEEHHHHHHHHhCCCCCcC---CHHHH
Confidence 3 6677764110 00000258999999999999999986542 33555
Q ss_pred HHHHhCCC
Q psy11418 544 NKFLSDPN 551 (553)
Q Consensus 544 ~~~~~~~~ 551 (553)
..++.+.|
T Consensus 159 ~~~~~~~g 166 (306)
T PRK09350 159 REVAAKLG 166 (306)
T ss_pred HHHHHHcC
Confidence 55544443
|
|
| >cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=121.78 Aligned_cols=79 Identities=34% Similarity=0.563 Sum_probs=69.8
Q ss_pred EEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc-----CCceeEee
Q psy11418 93 LSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-----KGELSIIP 167 (553)
Q Consensus 93 V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~-----~ge~~l~~ 167 (553)
|+|+|||+++|.+| +++|++|+|+++.+|++++.+.. .+ +.+..+.|+.||+|.|+|.+.+++ ++++||.+
T Consensus 2 V~i~Gwv~~~R~~g-~~~Fi~Lrd~~~~iQ~v~~~~~~--~~-~~~~~~~l~~~s~V~v~G~~~~~~~~~~~~~~~El~~ 77 (85)
T cd04100 2 VTLAGWVHSRRDHG-GLIFIDLRDGSGIVQVVVNKEEL--GE-FFEEAEKLRTESVVGVTGTVVKRPEGNLATGEIELQA 77 (85)
T ss_pred EEEEEEEehhccCC-CEEEEEEEeCCeeEEEEEECCcC--hH-HHHHHhCCCCCCEEEEEeEEEECCCCCCCCCCEEEEE
Confidence 89999999999999 79999999999999999987643 22 445678899999999999998765 78999999
Q ss_pred eeEEEecc
Q psy11418 168 KKLTLLSP 175 (553)
Q Consensus 168 ~~i~il~~ 175 (553)
+++++|++
T Consensus 78 ~~i~il~~ 85 (85)
T cd04100 78 EELEVLSK 85 (85)
T ss_pred eEEEEECC
Confidence 99999975
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A |
| >cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.9e-14 Score=119.51 Aligned_cols=78 Identities=23% Similarity=0.319 Sum_probs=67.0
Q ss_pred EEEEEEEEEeeec-CCCceEEEEEEeCCE-EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccC------Cce
Q psy11418 92 TLSVAGRVHAIRE-SGTKLMFYDLRGEGL-KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK------GEL 163 (553)
Q Consensus 92 ~V~v~Gri~~~R~-~g~kl~Fi~l~d~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~------ge~ 163 (553)
+|+|+|||+++|. +| +++|++|+|+++ .+||+++++. +.| +.++.|+.||+|.|+|.+.+++. |++
T Consensus 1 ~V~v~Gwv~~~R~~~~-~~~Fi~LrD~~g~~iQvv~~~~~----~~~-~~~~~l~~~s~V~V~G~v~~~~~~~~~~~~~~ 74 (86)
T cd04321 1 KVTLNGWIDRKPRIVK-KLSFADLRDPNGDIIQLVSTAKK----DAF-SLLKSITAESPVQVRGKLQLKEAKSSEKNDEW 74 (86)
T ss_pred CEEEEEeEeeEeCCCC-ceEEEEEECCCCCEEEEEECCCH----HHH-HHHhcCCCCcEEEEEEEEEeCCCcCCCCCCCE
Confidence 3899999999999 56 899999999999 7999997642 345 45677999999999999987764 999
Q ss_pred eEeeeeEEEecc
Q psy11418 164 SIIPKKLTLLSP 175 (553)
Q Consensus 164 ~l~~~~i~il~~ 175 (553)
||.++++++|++
T Consensus 75 Ei~~~~i~il~~ 86 (86)
T cd04321 75 ELVVDDIQTLNA 86 (86)
T ss_pred EEEEEEEEEecC
Confidence 999999999974
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for |
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.7e-14 Score=145.21 Aligned_cols=104 Identities=41% Similarity=0.664 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhHHHHHh-ccCcceEe-------
Q psy11418 425 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKST-HGSYKVTY------- 496 (553)
Q Consensus 425 l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel~~k~l-~~~~~~~~------- 496 (553)
|++||.++++||+||.++||+||+||+|+.++.|+.+.+|.+....+|.++||++|||||+|++ +++++++|
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR 80 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNFR 80 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEeeecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEeccee
Confidence 4789999999999999999999999999987743343444443212499999999999999996 45555544
Q ss_pred --------cCCCCCCC---------------------------C-------CcccCCCCCceeeeHHHHHHHHh
Q psy11418 497 --------HPDGPESG---------------------------S-------PVEIDFTPPFRRLHMFPALEAAL 528 (553)
Q Consensus 497 --------~~e~~~~~---------------------------~-------~~~~~~~~~f~rit~~eA~~~~~ 528 (553)
.+||+++. . ....+++.||+||||.||++.+.
T Consensus 81 ~e~~~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~rit~~ea~~~~~ 154 (269)
T cd00669 81 NEDLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVTYGFELEDFGLPFPRLTYREALERYG 154 (269)
T ss_pred CCCCCCCcccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhccccccccccccccCCCceEeeHHHHHHHhC
Confidence 56666530 0 01235667999999999999995
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-13 Score=115.26 Aligned_cols=77 Identities=25% Similarity=0.474 Sum_probs=67.3
Q ss_pred EEEEEEEEeeecCCCceEEEEEEeCCE--EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccC--CceeEeee
Q psy11418 93 LSVAGRVHAIRESGTKLMFYDLRGEGL--KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK--GELSIIPK 168 (553)
Q Consensus 93 V~v~Gri~~~R~~g~kl~Fi~l~d~~~--~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~--ge~~l~~~ 168 (553)
|+|+|||+++|.+| +++|++|+|+++ .+|++++++.. .| +..+.|+.||+|.|+|.+.++++ |++||.++
T Consensus 2 v~v~Gwv~~~R~~g-~~~Fi~LrD~s~~~~lQvv~~~~~~----~~-~~~~~l~~gs~V~v~G~v~~~~~~~~~~El~~~ 75 (82)
T cd04318 2 VTVNGWVRSVRDSK-KISFIELNDGSCLKNLQVVVDKELT----NF-KEILKLSTGSSIRVEGVLVKSPGAKQPFELQAE 75 (82)
T ss_pred EEEEEeEEEEEcCC-cEEEEEEECCCCccCEEEEEeCccc----CH-HHHhcCCCceEEEEEEEEEeCCCCCCCEEEEEE
Confidence 79999999999999 899999999997 59999987642 23 45678999999999999988765 99999999
Q ss_pred eEEEecc
Q psy11418 169 KLTLLSP 175 (553)
Q Consensus 169 ~i~il~~ 175 (553)
++++++.
T Consensus 76 ~i~il~~ 82 (82)
T cd04318 76 KIEVLGE 82 (82)
T ss_pred EEEEecC
Confidence 9999863
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial |
| >cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-13 Score=115.16 Aligned_cols=79 Identities=25% Similarity=0.368 Sum_probs=67.8
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc-----CCceeEe
Q psy11418 92 TLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-----KGELSII 166 (553)
Q Consensus 92 ~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~-----~ge~~l~ 166 (553)
.|+|+|||+++|.+| +++|++|||+++.+|++++.+.. .+ | +.++.|+.||+|.|+|++.+++ .+++||.
T Consensus 1 ~V~v~Gwv~~~R~~g-~~~Fi~LrD~~~~iQ~v~~~~~~--~~-~-~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~Ei~ 75 (84)
T cd04323 1 RVKVFGWVHRLRSQK-KLMFLVLRDGTGFLQCVLSKKLV--TE-F-YDAKSLTQESSVEVTGEVKEDPRAKQAPGGYELQ 75 (84)
T ss_pred CEEEEEEEEEEecCC-CcEEEEEEcCCeEEEEEEcCCcc--hh-H-HHHhcCCCcCEEEEEEEEEECCcccCCCCCEEEE
Confidence 389999999999998 99999999999999999986542 22 4 4567899999999999998764 5679999
Q ss_pred eeeEEEecc
Q psy11418 167 PKKLTLLSP 175 (553)
Q Consensus 167 ~~~i~il~~ 175 (553)
++++++|++
T Consensus 76 ~~~i~vl~~ 84 (84)
T cd04323 76 VDYLEIIGE 84 (84)
T ss_pred EEEEEEEcC
Confidence 999999974
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with |
| >PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.8e-12 Score=133.81 Aligned_cols=136 Identities=18% Similarity=0.355 Sum_probs=101.8
Q ss_pred CCcchhhcccchhhhccHHHHHHHHH-----HHHHHHHHHHHhhhCCeEEEecceecccc-----CCCCCcceeeccCCC
Q psy11418 188 KDKETRFRQRYLDLMINERIRHKFIV-----RAQIIAYVRRYLDSLGFLEVETPMMNMIA-----GGATAKPFVTHHNDL 257 (553)
Q Consensus 188 ~~~e~r~~~R~ldl~~~~~~~~~~~~-----rs~i~~~ir~fl~~~gF~EV~TPil~~~~-----gga~a~~F~t~~~~~ 257 (553)
.+.|+++++| +++.+++++.+ .+.+.+++|++|...||.||.||+|...+ |.....++....-..
T Consensus 180 ~~~e~~l~~r-----r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~i 254 (417)
T PRK09537 180 KELESELVSR-----RKNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRV 254 (417)
T ss_pred hhHHHHHHHh-----cchhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheee
Confidence 3456777777 58999999999 99999999999999999999999996321 100001111111113
Q ss_pred Ccceeee--eCHHHHHHHHH----HccCCcEEEEccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 258 NMDLYMR--IAPELYLKMLV----VGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 258 ~~~~~L~--~Spql~lk~l~----~~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
+...+|| ..|.|+..... ...--|+|+||+|||+|..+.+|++||+|++++..+. ++.|++.++++++..+
T Consensus 255 deel~LRpsLtPsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiGs~~~f~dL~~lleeLL~~L 333 (417)
T PRK09537 255 DKNFCLRPMLAPGLYNYLRKLDRILPDPIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMGSGCTRENLENIIDDFLKHL 333 (417)
T ss_pred CCceEehhhhHHHHHHHHHhhhhcccCCeeEEEEeceEecCCCCCCCcceEEEEEEEEeCCchHHHHHHHHHHHHHHHC
Confidence 5578999 56777664310 0112389999999999998889999999999999876 4889999999999887
|
|
| >cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.2e-11 Score=103.82 Aligned_cols=90 Identities=48% Similarity=0.666 Sum_probs=75.5
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCCh
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK 404 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~~ 404 (553)
|-.+.++.+.+|++++.... ..+.|..+.+.|+.||+|.|+|.+.++++|++||.+++++|+++|..++|++.++..+.
T Consensus 19 Fi~lrd~~~~lQ~v~~~~~~-~~~~~~~~~~~l~~g~~V~v~G~v~~~~~g~~El~~~~~~ils~~~~plP~~~~~~~~~ 97 (108)
T cd04322 19 FADLQDESGKIQVYVNKDDL-GEEEFEDFKKLLDLGDIIGVTGTPFKTKTGELSIFVKEFTLLSKSLRPLPEKFHGLTDV 97 (108)
T ss_pred EEEEEECCeEEEEEEECCCC-CHHHHHHHHhcCCCCCEEEEEEEEEecCCCCEEEEeCEeEEeeccCCCCCCCccCcCCh
Confidence 44566788889998876433 23455555555999999999999999999999999999999999998899988888889
Q ss_pred hhhccccceee
Q psy11418 405 ETRFRQRYLDL 415 (553)
Q Consensus 405 e~~~~~R~L~l 415 (553)
++++++||||+
T Consensus 98 ~~r~~~R~ldl 108 (108)
T cd04322 98 ETRYRQRYLDL 108 (108)
T ss_pred hheeecccccC
Confidence 99999999986
|
These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein |
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-10 Score=111.18 Aligned_cols=116 Identities=34% Similarity=0.466 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhhhCCeEEEecceecccc----CCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHc----cCCcEEE
Q psy11418 213 VRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG----GLDRVYE 284 (553)
Q Consensus 213 ~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~----g~~rVfe 284 (553)
+|+.+.+.+|++|.+.||.||.||++.+.+ .+..........+..+...+||.|+...+.+.+.. .--|+||
T Consensus 1 ~~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfe 80 (211)
T cd00768 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAE 80 (211)
T ss_pred CHHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEE
Confidence 367889999999999999999999996431 11111112222334566789999999999887764 3459999
Q ss_pred EccccccCCCCC--CccCCcceeeeEeccCC------HHHHHHHHHHHHhcc
Q psy11418 285 VGRQFRNEGIDL--THNPEFTTCEFYMAYAD------YNDLMHLTEDLISGR 328 (553)
Q Consensus 285 i~~~FR~E~~~~--~H~~EFt~lE~e~a~~~------~~~~m~~~e~li~~~ 328 (553)
||+|||+|.... +|+.||+|+++++.+.+ +.+++.++++++..+
T Consensus 81 ig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~l 132 (211)
T cd00768 81 IGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRAL 132 (211)
T ss_pred EcceeecCCCccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHc
Confidence 999999997665 78999999999999864 588999999998877
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. |
| >PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-09 Score=86.92 Aligned_cols=75 Identities=37% Similarity=0.575 Sum_probs=64.3
Q ss_pred EEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEE
Q psy11418 93 LSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTL 172 (553)
Q Consensus 93 V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~i 172 (553)
|+|+|||.+++..|++++|++|.|+++.+|+++..+ .+......|..||+|.|+|.+...+.++++|.++++++
T Consensus 1 V~v~G~V~~~~~~~~~~~~~~l~D~tg~i~~~~~~~------~~~~~~~~l~~g~~v~v~G~v~~~~~~~~~l~~~~i~~ 74 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGGKIVFFTLEDGTGSIQVVFFNE------EYERFREKLKEGDIVRVRGKVKRYNGGELELIVPKIEI 74 (75)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETH------HHHHHHHTS-TTSEEEEEEEEEEETTSSEEEEEEEEEE
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEECCccEEEEEccH------HhhHHhhcCCCCeEEEEEEEEEEECCccEEEEECEEEE
Confidence 789999999954445999999999999999999872 23356788999999999999999888889999999987
Q ss_pred e
Q psy11418 173 L 173 (553)
Q Consensus 173 l 173 (553)
|
T Consensus 75 l 75 (75)
T PF01336_consen 75 L 75 (75)
T ss_dssp E
T ss_pred C
Confidence 6
|
The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A .... |
| >cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-09 Score=99.84 Aligned_cols=90 Identities=22% Similarity=0.302 Sum_probs=71.1
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccC---------CCCceeEEeeeEEEEeccCCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT---------KKGELSIIPKKLTLLSPCLHMLP 395 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~---------~~g~~El~~~~i~vl~~~~~~~P 395 (553)
|..+-++.+.+|++++.... ++ +.+++.|+.||+|.|+|.+.+. .+|++||.++++++|++| .++|
T Consensus 34 Fi~LrD~~g~~Q~v~~~~~~---~~-~~~~~~l~~gs~V~V~G~~~~~~~~~~~~~~~~~~~El~~~~i~vl~~~-~~lP 108 (135)
T cd04317 34 FIDLRDRYGIVQVVFDPEEA---PE-FELAEKLRNESVIQVTGKVRARPEGTVNPKLPTGEIEVVASELEVLNKA-KTLP 108 (135)
T ss_pred EEEEecCCeeEEEEEeCCch---hH-HHHHhCCCCccEEEEEEEEECCCccccCCCCCCCcEEEEEeEEEEEECC-CCCC
Confidence 44566677788888765321 22 4677899999999999998764 357899999999999999 6899
Q ss_pred ccccC--CCChhhhccccceeeecChH
Q psy11418 396 HMHFG--VKDKETRFRQRYLDLMINER 420 (553)
Q Consensus 396 ~~~~~--~~~~e~~~~~R~L~lR~~~~ 420 (553)
+...+ ..+.++++++|||||| +|.
T Consensus 109 ~~~~~~~~~~~~~r~~~R~LdLR-~~~ 134 (135)
T cd04317 109 FEIDDDVNVSEELRLKYRYLDLR-RPK 134 (135)
T ss_pred CccccccCCCHHHhhhcceeecC-CCC
Confidence 87754 3478999999999999 654
|
These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh |
| >TIGR02367 PylS pyrrolysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.92 E-value=6e-09 Score=110.87 Aligned_cols=112 Identities=21% Similarity=0.373 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhhhCCeEEEecceecccc-----CCCCC-----cceeeccCCCCcceeee--eCHHHHHHHHH----
Q psy11418 212 IVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-----GGATA-----KPFVTHHNDLNMDLYMR--IAPELYLKMLV---- 275 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~-----gga~a-----~~F~t~~~~~~~~~~L~--~Spql~lk~l~---- 275 (553)
.-.+.+.+.+|++|...||.||.||+|...+ +.... ..|. ++...+|| +.|+|+.-...
T Consensus 240 ~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk-----~ee~lvLRPdLTPsLaR~La~N~~~ 314 (453)
T TIGR02367 240 DYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR-----VDKNFCLRPMLAPNLYNYLRKLDRA 314 (453)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceE-----ecCceEecccCHHHHHHHHHHhhhh
Confidence 4567889999999999999999999995211 11001 2222 34568999 77887743211
Q ss_pred HccCCcEEEEccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 276 VGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 276 ~~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
...-.|+|+||+|||+|..+.+|+.||+|++++.+.. ++.|+..++.+++..+
T Consensus 315 l~~PqKIFEIGkVFR~E~~~~thlREF~QL~~eIaG~~atfaDlealL~e~Lr~L 369 (453)
T TIGR02367 315 LPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLEAIIKDFLDHL 369 (453)
T ss_pred ccCCeeEEEEcCeEecCCCCCCCcCeEEEEEEEEECCCCCHHHHHHHHHHHHHHC
Confidence 1112399999999999999999999999999999876 5999998888888777
|
PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase. |
| >cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-07 Score=96.00 Aligned_cols=127 Identities=18% Similarity=0.252 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHhhhCCeEEEecceecccc----C-C--CCCcceeeccCCCCcceeeeeCHHHHHHHHHHcc-----C
Q psy11418 212 IVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----G-G--ATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG-----L 279 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----g-g--a~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g-----~ 279 (553)
+.|..+.+.+++.|.++||.||.||++.+.+ + + ...+.|.. .+..|..+.||.-.....-++++.. .
T Consensus 3 ~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~-~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~~ 81 (261)
T cd00773 3 ALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRF-KDKGGRDLALRPDLTAPVARAVAENLLSLPL 81 (261)
T ss_pred HHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEE-ECCCCCEEEeCCCCcHHHHHHHHhcCccCCC
Confidence 5788999999999999999999999996421 1 1 12234432 2334678999977666666655532 2
Q ss_pred -CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCccccccc
Q psy11418 280 -DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANA 341 (553)
Q Consensus 280 -~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~ 341 (553)
-|+|++|+|||+|.....|..||+|+++|+-..+ ..|++.++.++++.+ ++....+..|.
T Consensus 82 p~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~~~~~daE~i~l~~~~l~~l--g~~~~~i~l~~ 146 (261)
T cd00773 82 PLKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSDSPLADAEVIALAVEILEAL--GLKDFQIKINH 146 (261)
T ss_pred CeEEEEEcCEEecCCCCCCCccceEEeceeeeCCCChHHHHHHHHHHHHHHHHc--CCCceEEEECC
Confidence 3999999999999988889999999999987664 346778887777777 34445555554
|
HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain. |
| >cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.6e-08 Score=85.97 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=67.0
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC--CCceeEEeeeEEEEeccCCCCCccccCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSIIPKKLTLLSPCLHMLPHMHFGVK 402 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~--~g~~El~~~~i~vl~~~~~~~P~~~~~~~ 402 (553)
|..+-++.+.+|++++.. . .++++..+++|+.||+|.|+|.+.+++ .+++||.+++++++++|. ++|+... .
T Consensus 19 Fi~lrD~~g~iQ~v~~~~-~--~~~~~~~~~~l~~~s~v~V~G~v~~~~~~~~~~Ei~~~~i~vl~~a~-~~pi~~~--~ 92 (103)
T cd04319 19 FIVLRDSTGIVQAVFSKD-L--NEEAYREAKKVGIESSVIVEGAVKADPRAPGGAEVHGEKLEIIQNVE-FFPITED--A 92 (103)
T ss_pred EEEEecCCeeEEEEEeCC-C--CHHHHHHHhCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEEEecCC-CCccCCC--C
Confidence 445667778889888653 1 245566778899999999999997765 678999999999999996 7887754 3
Q ss_pred Chhhhccccce
Q psy11418 403 DKETRFRQRYL 413 (553)
Q Consensus 403 ~~e~~~~~R~L 413 (553)
++++++++|||
T Consensus 93 ~~~~~~~~rhL 103 (103)
T cd04319 93 SDEFLLDVRHL 103 (103)
T ss_pred CHHHHhhccCC
Confidence 89999999997
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. |
| >cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-07 Score=91.77 Aligned_cols=108 Identities=25% Similarity=0.358 Sum_probs=79.4
Q ss_pred HHHHHHHHHhhhCCeEEEecceeccccCCC--CC-----------cceeeccCCCCcceeeeeC--HHHHHHHHHHc--c
Q psy11418 216 QIIAYVRRYLDSLGFLEVETPMMNMIAGGA--TA-----------KPFVTHHNDLNMDLYMRIA--PELYLKMLVVG--G 278 (553)
Q Consensus 216 ~i~~~ir~fl~~~gF~EV~TPil~~~~gga--~a-----------~~F~t~~~~~~~~~~L~~S--pql~lk~l~~~--g 278 (553)
.+.+.+|++|...||.||.|+.+.+..... .. .++... |-. .-+||.| |.|. + .++. .
T Consensus 5 ~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~-NP~--~~~LR~sLlp~LL-~-~l~~N~~ 79 (218)
T cd00496 5 KVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYIN-DPA--RLLLRTHTSAVQA-R-ALAKLKP 79 (218)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEEC-CCc--eEEEeccCcHHHH-H-HHHhcCC
Confidence 456778999999999999999996542110 00 111111 111 3678866 4554 3 3344 4
Q ss_pred CCcEEEEccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 279 LDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 279 ~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
--|+||||+|||++..+..|+|||+|+++..++. |+.|++..+|.++..+
T Consensus 80 ~~~lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l 131 (218)
T cd00496 80 PIRIFSIGRVYRNDEIDATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKEL 131 (218)
T ss_pred CeeEEEEcCeEECCCCCCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 5599999999999877778999999999999988 9999999999999877
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. |
| >PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.9e-07 Score=93.98 Aligned_cols=114 Identities=22% Similarity=0.271 Sum_probs=81.7
Q ss_pred HHHHHHHHHhhhCCeEEEecceeccc---------cCCC----CCcceeeccCCC--CcceeeeeCHHHHHHHHHH---c
Q psy11418 216 QIIAYVRRYLDSLGFLEVETPMMNMI---------AGGA----TAKPFVTHHNDL--NMDLYMRIAPELYLKMLVV---G 277 (553)
Q Consensus 216 ~i~~~ir~fl~~~gF~EV~TPil~~~---------~gga----~a~~F~t~~~~~--~~~~~L~~Spql~lk~l~~---~ 277 (553)
.+.+.+|++|...||.||.+|.+.+. +..- ..+.|......- +...-||...--.+-+.+. .
T Consensus 21 ~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l~~~~~ 100 (247)
T PF01409_consen 21 KFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTLNKHRP 100 (247)
T ss_dssp HHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHHTTTSH
T ss_pred HHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHHHHhcC
Confidence 45688999999999999999999431 1111 122343322222 5677888643333333331 1
Q ss_pred cCCcEEEEccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhccc
Q psy11418 278 GLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGRK 329 (553)
Q Consensus 278 g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~~ 329 (553)
.--|+|+||+|||+|..|.+|+|+|+|+|.-.+.. ++.++..+++.++++++
T Consensus 101 ~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lf 154 (247)
T PF01409_consen 101 PPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELF 154 (247)
T ss_dssp SSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHH
T ss_pred CCeEEEecCceEecCCcccccCccceeEeeEEEecccchhHHHHHHHHHHHHHh
Confidence 22499999999999999999999999999998876 69999999999999995
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B .... |
| >COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.4e-07 Score=99.61 Aligned_cols=134 Identities=20% Similarity=0.261 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc------cCCCC---CcceeeccCCCCcceeeeeCHHHHHHHHHHcc--
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI------AGGAT---AKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG-- 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~------~gga~---a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g-- 278 (553)
-+..|..|...+|+.+.+.||.||.||++-.. .|..+ .+...+..+.-|..+.||.-..-..-|+++..
T Consensus 17 d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe~Tapv~R~~~en~~ 96 (429)
T COG0124 17 DMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPELTAPVARAVAENKL 96 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecccCcHHHHHHHHhccc
Confidence 45688899999999999999999999999321 23321 13334445667889999966666666666533
Q ss_pred -C---CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCccccccccccc
Q psy11418 279 -L---DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANARMYQ 345 (553)
Q Consensus 279 -~---~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~~ 345 (553)
. -|.|.+|||||.|.....+.-||+||++|..+.+ ..|++.++-+++..+ ++...++..|.+...
T Consensus 97 ~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~l--Gi~~~~l~iN~~g~l 169 (429)
T COG0124 97 DLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDSPDADAEVIALAVEILEAL--GIGGFTLEINSRGIL 169 (429)
T ss_pred cccCCeeEEEecceecCCCCCCCCceeeEEcCeEEeCCCCcccCHHHHHHHHHHHHHc--CCCcEEEEEcCcccH
Confidence 1 3999999999999999999999999999998873 788999999999999 888888999987663
|
|
| >TIGR00442 hisS histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.2e-07 Score=97.63 Aligned_cols=133 Identities=16% Similarity=0.205 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceeccc-----cCCCC-----CcceeeccCCCCcceeeeeCHHHHHHHHHHcc
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI-----AGGAT-----AKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG 278 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-----~gga~-----a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g 278 (553)
.-.+.+..+...+++.|.++||.||.||++... .+|.. .+.|.. .+.-|..+.||.-.....-++++..
T Consensus 12 ~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~-~d~~g~~l~LRpD~T~~iaR~~~~~ 90 (397)
T TIGR00442 12 EEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTF-KDKGGRSLTLRPEGTAPVARAVIEN 90 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEE-ECCCCCEEeecCCCcHHHHHHHHhc
Confidence 345788899999999999999999999999532 11221 123332 2345678889977666666655432
Q ss_pred ------CCcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCcccccccccc
Q psy11418 279 ------LDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANARMY 344 (553)
Q Consensus 279 ------~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~ 344 (553)
--|+|++|+|||+|..+..|..||+|+++|....+ ..|++.++.+++..+ ++..+++..|.+.+
T Consensus 91 ~~~~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~~~~~d~E~i~l~~e~l~~l--g~~~~~i~i~~~~i 164 (397)
T TIGR00442 91 KLLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEIIALAAEILKEL--GIKDFTLEINSLGI 164 (397)
T ss_pred ccccCCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCCCCHHHHHHHHHHHHHHHHHc--CCCceEEEecCccc
Confidence 14999999999999988888999999999987764 248888888888888 66667777777654
|
This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff. |
| >PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=83.31 Aligned_cols=114 Identities=23% Similarity=0.323 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhh-hCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHcc-----
Q psy11418 213 VRAQIIAYVRRYLD-SLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG----- 278 (553)
Q Consensus 213 ~rs~i~~~ir~fl~-~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g----- 278 (553)
++++|++.+++.+. +.||.||.||+|.+.. .|- ....|... +.-+.+++|+-+.+..+-.++...
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~-~~~~~~~~L~pt~~~~~~~~~~~~~~~~~ 79 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVK-DRGDEEYCLRPTSEPGIYSLFKNEIRSSY 79 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEE-ETTTEEEEE-SSSHHHHHHHHHHHEEBHG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeee-ecccccEEeccccccceeeeecceeeecc
Confidence 47889999999999 9999999999996421 111 12344432 233467999987765554443321
Q ss_pred --CC-cEEEEccccccCCCCC---CccCCcceeeeEeccCCHHHHHHHHHHHHhcc
Q psy11418 279 --LD-RVYEVGRQFRNEGIDL---THNPEFTTCEFYMAYADYNDLMHLTEDLISGR 328 (553)
Q Consensus 279 --~~-rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~ 328 (553)
++ |+|++|+|||+|...+ .++-||+|.|++....+ ++..+..++++..+
T Consensus 80 ~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~~~~~ 134 (173)
T PF00587_consen 80 RDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEELLELY 134 (173)
T ss_dssp GGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHHHHHH
T ss_pred ccCCeEEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHHHHHH
Confidence 22 8999999999995433 59999999999998887 66666666665444
|
seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B .... |
| >cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.9e-07 Score=89.07 Aligned_cols=116 Identities=19% Similarity=0.305 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHhhhCCeEEEecceecccc----CC--C--CCcceeeccCCC----CcceeeeeCHHHHHHHHHHcc-
Q psy11418 212 IVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GG--A--TAKPFVTHHNDL----NMDLYMRIAPELYLKMLVVGG- 278 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gg--a--~a~~F~t~~~~~----~~~~~L~~Spql~lk~l~~~g- 278 (553)
+++..|.+.+++.|.+.||.||.||+|.+.. +| . ....|... +.- +..++||...+...-++++.-
T Consensus 3 ~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~LrP~~~~~i~~~~~~~~ 81 (235)
T cd00670 3 ALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFE-DKGRELRDTDLVLRPAACEPIYQIFSGEI 81 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeec-cCcccccCCeEEEecCCCHHHHHHHhccC
Confidence 5788999999999999999999999996422 22 1 11223221 111 567899977666655544432
Q ss_pred -----C-CcEEEEccccccCCCC---CCccCCcceeeeEeccCC------HHHHHHHHHHHHhcc
Q psy11418 279 -----L-DRVYEVGRQFRNEGID---LTHNPEFTTCEFYMAYAD------YNDLMHLTEDLISGR 328 (553)
Q Consensus 279 -----~-~rVfei~~~FR~E~~~---~~H~~EFt~lE~e~a~~~------~~~~m~~~e~li~~~ 328 (553)
+ -|+|++|+|||+|... ..+..||+|.|++....+ ..++++++.+++..+
T Consensus 82 ~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~l 146 (235)
T cd00670 82 LSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIAREL 146 (235)
T ss_pred ccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHc
Confidence 2 2899999999999887 357889999999997765 567777777777666
|
This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >CHL00201 syh histidine-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.8e-07 Score=95.92 Aligned_cols=132 Identities=14% Similarity=0.112 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecc------ccCCCC----CcceeeccCCCCcceeeeeCHHHHHHHHHHcc-
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNM------IAGGAT----AKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG- 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~------~~gga~----a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g- 278 (553)
-...|..+.+.+++.|..+||.||.||++-. ..|+.. .+.|.. .+.-|..+.||.-.....-+.++..
T Consensus 17 ~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~-~d~~g~~l~LRpd~T~~iaR~~~~~~ 95 (430)
T CHL00201 17 EINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRF-TDRSNRDITLRPEGTAGIVRAFIENK 95 (430)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEE-EcCCCCEEEeCCCCcHHHHHHHHHcc
Confidence 3457889999999999999999999999942 112221 234432 2334678899977777777754332
Q ss_pred -----CC-cEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCcccccccccc
Q psy11418 279 -----LD-RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANARMY 344 (553)
Q Consensus 279 -----~~-rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~ 344 (553)
.. |.|++|+|||+|.+.....-||+|+++|.-+.+ -.|++.++-+.++.+ ++...++..|.+.+
T Consensus 96 ~~~~~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l~~l--Gl~~~~i~l~~~~~ 169 (430)
T CHL00201 96 MDYHSNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSIDARADTEVIHLAMQIFNEL--QVKNLILDINSIGK 169 (430)
T ss_pred ccccCCCeEEEEEcceecCCCCcCCccceeEEeceEEECCCChhhHHHHHHHHHHHHHHc--CCCceEEEECCCCc
Confidence 22 999999999999998888899999999987763 358999999999888 67777777776443
|
|
| >PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.4e-07 Score=95.28 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceeccc------cCCC-CCcceeeccCC-CCcceeeeeCHHHHHHHHHHccC-
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI------AGGA-TAKPFVTHHND-LNMDLYMRIAPELYLKMLVVGGL- 279 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~------~gga-~a~~F~t~~~~-~~~~~~L~~Spql~lk~l~~~g~- 279 (553)
.-...|..+...+++.|..+||.||.||++... .|+. ..+.|.. .+. -|..+.||.-....+-|+++..+
T Consensus 15 ~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f-~d~~~g~~l~LRpD~T~~iaR~~a~~~~ 93 (391)
T PRK12292 15 EEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKL-VDQLSGRTLGLRPDMTAQIARIAATRLA 93 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEE-eecCCCCEEEECCCCcHHHHHHHHHhcc
Confidence 344678899999999999999999999999421 1212 1234432 233 46788999877777777766432
Q ss_pred -----CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCcccccccccc
Q psy11418 280 -----DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANARMY 344 (553)
Q Consensus 280 -----~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~ 344 (553)
-|+|++|+|||.|.....+.-||+|+++|.-+.+ --|++.++-+.+..+ ++...++..|.+.+
T Consensus 94 ~~~~p~r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~l--gl~~~~i~i~~~~i 165 (391)
T PRK12292 94 NRPGPLRLCYAGNVFRAQERGLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKAL--GLPNFTLDLGHVGL 165 (391)
T ss_pred CCCCCeEEEeeceeeecCCCcCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHc--CCCCeEEEeccHHH
Confidence 2899999999999998889999999999997663 478999999999888 55567777776543
|
|
| >PLN02972 Histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-06 Score=99.31 Aligned_cols=133 Identities=14% Similarity=0.222 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceeccc------cCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHcc---C
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI------AGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG---L 279 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~------~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g---~ 279 (553)
.-...|..|...+++.|..+||.||+||++-.. .|......|. ..+.-|..+.||.-.....-|+++.. -
T Consensus 339 ~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~-f~D~gGr~LaLRPDlTvPiAR~vA~n~~~p 417 (763)
T PLN02972 339 EQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYD-LADQGGELCSLRYDLTVPFARYVAMNGITS 417 (763)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEE-EECCCCCEEEeCCCChHHHHHHHHhCCCCc
Confidence 456789999999999999999999999999431 2222222332 23455778899988888888877643 2
Q ss_pred CcEEEEccccccCCCCCCccCCcceeeeEeccC-C----HHHHHHHHHHHHhcccccCCCcccccccccc
Q psy11418 280 DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA-D----YNDLMHLTEDLISGRKEDRNRPCVMANARMY 344 (553)
Q Consensus 280 ~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~-~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~ 344 (553)
-|.|+||++||.|.....+..||+||++|..+. + -.|++.++-+.+..+ ++...++..|.+.+
T Consensus 418 ~KrYyiG~VFR~e~pqkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~L--Gi~df~I~INh~~i 485 (763)
T PLN02972 418 FKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDEL--DIGTYEVKLNHRKL 485 (763)
T ss_pred ceEEEeccEEecCCCCCCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHhC--CCCceEEEeCCHHH
Confidence 388999999999998888999999999999875 2 578999999999888 67777888887655
|
|
| >PLN02530 histidine-tRNA ligase | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-06 Score=96.10 Aligned_cols=132 Identities=14% Similarity=0.164 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc------cCCCCC-cceeeccCCCCcceeeeeCHHHHHHHHHHccC---
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI------AGGATA-KPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL--- 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~------~gga~a-~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~--- 279 (553)
-...|..|...+++.|..+||.||.||++... .|+... +.|. ..+.-|..+-||.-.....-|+++...
T Consensus 83 ~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~-f~D~~g~~l~LRpD~T~~iaR~~~~~~~~~ 161 (487)
T PLN02530 83 DMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYN-FEDKGGRRVALRPELTPSLARLVLQKGKSL 161 (487)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEE-EECCCCCEEecCCCCcHHHHHHHHhccccc
Confidence 35678899999999999999999999999531 232222 2332 234457788999887777777766432
Q ss_pred ---CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCC--Ccccccccccc
Q psy11418 280 ---DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRN--RPCVMANARMY 344 (553)
Q Consensus 280 ---~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~--~iqv~~n~r~~ 344 (553)
-|.|++|+|||.|.....+.-||+|+++|.-+.+ ..|++.++-+.+..+ ++. ..++..|.+.+
T Consensus 162 ~~P~r~~y~g~vfR~e~~q~gr~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l~~l--gl~~~~~~i~i~~~~i 233 (487)
T PLN02530 162 SLPLKWFAIGQCWRYERMTRGRRREHYQWNMDIIGVPGVEAEAELLAAIVTFFKRV--GITSSDVGIKVSSRKV 233 (487)
T ss_pred CCCeEEEEEcCEEcCcCCCCCCccceEEcCeeEeCCCCcchhHHHHHHHHHHHHHc--CCCCCceEEEEcCHHH
Confidence 2899999999999988888999999999987653 568888888888877 554 46677776543
|
|
| >cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.1e-06 Score=84.58 Aligned_cols=121 Identities=15% Similarity=0.115 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHhhhCCeEEEecceeccc----cCCCC-----CcceeeccCCCC----cceeeeeCHHHHHHHHHHcc
Q psy11418 212 IVRAQIIAYVRRYLDSLGFLEVETPMMNMI----AGGAT-----AKPFVTHHNDLN----MDLYMRIAPELYLKMLVVGG 278 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~gga~-----a~~F~t~~~~~~----~~~~L~~Spql~lk~l~~~g 278 (553)
+++.+|.+.+++.+.+.||.||.||+|.+. ..|.. .+.|... +.-+ .+++||...+..+-.+...-
T Consensus 33 ~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~-~~~~~~~~~~l~LrPt~e~~~~~~~~~~ 111 (264)
T cd00772 33 AILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFK-DAGDEELEEDFALRPTLEENIGEIAAKF 111 (264)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEE-eCCCCccCceEEECCCCCHHHHHHHHhh
Confidence 578899999999999999999999999642 12221 1224332 1222 67999977665544443322
Q ss_pred ------CC-cEEEEccccccCCCCCC---ccCCcceeeeEeccCCHHHHHHHHHHHH---hcccccCC
Q psy11418 279 ------LD-RVYEVGRQFRNEGIDLT---HNPEFTTCEFYMAYADYNDLMHLTEDLI---SGRKEDRN 333 (553)
Q Consensus 279 ------~~-rVfei~~~FR~E~~~~~---H~~EFt~lE~e~a~~~~~~~m~~~e~li---~~~~~~~~ 333 (553)
+. |+|++++|||.|..+++ +..||+|.|.+....+.++.....+.++ ..+++.++
T Consensus 112 i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~~~i~~~l~ 179 (264)
T cd00772 112 IKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYAEIARDLA 179 (264)
T ss_pred hhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 23 99999999999965543 7889999999987788777777777766 44444444
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-06 Score=90.42 Aligned_cols=113 Identities=23% Similarity=0.318 Sum_probs=78.6
Q ss_pred HHHHHHHHHhhhCCeEEEecceeccccC--CCCC----cceeeccC--CCCcceeeeeCHHHHHHHHHHccC---CcEEE
Q psy11418 216 QIIAYVRRYLDSLGFLEVETPMMNMIAG--GATA----KPFVTHHN--DLNMDLYMRIAPELYLKMLVVGGL---DRVYE 284 (553)
Q Consensus 216 ~i~~~ir~fl~~~gF~EV~TPil~~~~g--ga~a----~~F~t~~~--~~~~~~~L~~Spql~lk~l~~~g~---~rVfe 284 (553)
.+.+.+|++|...||.|+.||.+.+... .+-. .|-....+ +......||.|.---+=+.+.... -|+||
T Consensus 76 ~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~d~~vLRtsl~p~ll~~l~~N~~~pirlFE 155 (294)
T TIGR00468 76 RVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIKDRLLLRTHTTAVQLRTMEENEKPPIRIFS 155 (294)
T ss_pred HHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeecCCcceecccHHHHHHHHHhcCCCCceEEE
Confidence 3456789999999999999999965311 0000 00000001 112345688664333333344444 39999
Q ss_pred EccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 285 VGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 285 i~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
||+|||++..+.+|+|||+|++.-+... |+.|+...+|.++..+
T Consensus 156 iGrVfr~d~~d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~l 201 (294)
T TIGR00468 156 PGRVFRNDTVDATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKKM 201 (294)
T ss_pred ecceEEcCCCCCccCChhhEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 9999999988889999999999998754 8999999999999877
|
Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment. |
| >PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.8e-06 Score=94.07 Aligned_cols=49 Identities=27% Similarity=0.449 Sum_probs=45.0
Q ss_pred CcEEEEccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 280 DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 280 ~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
-|+|.||+|||+|..|++|+|||+|+|...... ++.+++.++.++++.+
T Consensus 358 ~k~fsigrVfR~d~~DatH~~eFhQ~Eg~vi~~~~s~~~L~~~l~~f~~~l 408 (494)
T PTZ00326 358 KKYFSIDRVFRNETLDATHLAEFHQVEGFVIDRNLTLGDLIGTIREFFRRI 408 (494)
T ss_pred ceEEecCCEecCCCCCCCcCceeEEEEEEEEeCCCCHHHHHHHHHHHHHhc
Confidence 499999999999999999999999999998876 5889999999888877
|
|
| >PRK00037 hisS histidyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.8e-06 Score=91.68 Aligned_cols=125 Identities=15% Similarity=0.210 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc------cCCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHcc-
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI------AGGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG- 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~------~gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g- 278 (553)
-.+.+..+...+++.|.++||.||.||++... .|.. ..+.|.. .+.-|..+.||.-.....-+.++..
T Consensus 17 ~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~-~d~~g~~l~LRpd~T~~~ar~~~~~~ 95 (412)
T PRK00037 17 ESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTF-QDKGGRSLTLRPEGTAPVVRAVIEHK 95 (412)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEE-EcCCCCEEEecCCCcHHHHHHHHhCC
Confidence 44678889999999999999999999999531 1222 1233432 2335778889976555555554432
Q ss_pred --CCcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCccc
Q psy11418 279 --LDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCV 337 (553)
Q Consensus 279 --~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv 337 (553)
--|+|++|+|||+|..+..|..||+|+++|.-..+ ..|++.++.+++..+ ++...++
T Consensus 96 ~~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~~~~~~d~E~i~~~~~~l~~l--g~~~~~~ 158 (412)
T PRK00037 96 LQPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEVIALAADILKAL--GLKGLKL 158 (412)
T ss_pred CCCeEEEEEcCccccCCCCCCcccceEEcCeeeeCCCCcchhHHHHHHHHHHHHHc--CCCceee
Confidence 34999999999999988889999999999987653 367888888888777 4444433
|
|
| >TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.3e-06 Score=88.09 Aligned_cols=132 Identities=17% Similarity=0.166 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc-----cCCC-CCcceeeccCCCCcceeeeeCHHHHHHHHHHc---c--
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI-----AGGA-TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG---G-- 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-----~gga-~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~---g-- 278 (553)
-.+.+..+...+++.|.++||.||+||++... .+|. ..+.|.. .+.-|..+.||.-.....-+.++. +
T Consensus 7 ~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~-~d~~g~~l~LRpD~T~~iaR~~~~~~~~~~ 85 (314)
T TIGR00443 7 EAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKL-FDSLGRVLGLRPDMTTPIARAVSTRLRDRP 85 (314)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEE-ECCCCCEEeecCcCcHHHHHHHHHhcccCC
Confidence 35678999999999999999999999999532 1212 2344433 233477888996555555555443 2
Q ss_pred -CCcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCcccccccccc
Q psy11418 279 -LDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANARMY 344 (553)
Q Consensus 279 -~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~ 344 (553)
--|+|++|+|||.|.....+.-||+|+++|.-..+ -.|++.++-+.+..+ ++...++..|...+
T Consensus 86 ~p~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~l--g~~~~~i~l~~~~i 154 (314)
T TIGR00443 86 LPLRLCYAGNVFRTNESGAGRSREFTQAGVELIGAGGPAADAEVIALLIEALKAL--GLKDFKIELGHVGL 154 (314)
T ss_pred CCeEEEEeceEeecCCCcCCCcccccccceEEeCCCCchhHHHHHHHHHHHHHHc--CCCCeEEEeCcHHH
Confidence 24999999999999998889999999999986653 458888888888887 56666676666443
|
Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit. |
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=3e-06 Score=93.59 Aligned_cols=117 Identities=22% Similarity=0.343 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHhhhCCeEEEecceeccc-------------cCCCCCcceeecc------------------------
Q psy11418 212 IVRAQIIAYVRRYLDSLGFLEVETPMMNMI-------------AGGATAKPFVTHH------------------------ 254 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-------------~gga~a~~F~t~~------------------------ 254 (553)
..+..+++.+|+.|...||.|++||++.+. |.-...+.|....
T Consensus 233 ~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~he~g~~~ 312 (489)
T PRK04172 233 HPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHEHGGDT 312 (489)
T ss_pred ChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHHhccCCC
Confidence 456778899999999999999999999532 0000011111100
Q ss_pred ----------CCCCcceeeeeCHHHHHHHHHHc-cC--CcEEEEccccccCCCCCCccCCcceeeeEeccC--CHHHHHH
Q psy11418 255 ----------NDLNMDLYMRIAPELYLKMLVVG-GL--DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMH 319 (553)
Q Consensus 255 ----------~~~~~~~~L~~Spql~lk~l~~~-g~--~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~ 319 (553)
+..+..+.||...--.+-++++. +. -|+|+||+|||+|..+.+|++||+|+++.+++. ++.+++.
T Consensus 313 ~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~d~~~l~Ef~ql~~~i~G~~~~f~elkg 392 (489)
T PRK04172 313 GSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTIDATHLPEFYQLEGIVMGEDVSFRDLLG 392 (489)
T ss_pred CCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCCCcccCCchheEEEEEEeCCCCHHHHHH
Confidence 00123467886655555555542 22 299999999999999999999999999999986 6889999
Q ss_pred HHHHHHhcc
Q psy11418 320 LTEDLISGR 328 (553)
Q Consensus 320 ~~e~li~~~ 328 (553)
++++++..+
T Consensus 393 ~l~~ll~~l 401 (489)
T PRK04172 393 ILKEFYKRL 401 (489)
T ss_pred HHHHHHHHh
Confidence 999999877
|
|
| >PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=4e-06 Score=90.11 Aligned_cols=132 Identities=10% Similarity=-0.002 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc------cCCCC-CcceeeccCC-CCcceeeeeCHHHHHHHHHHcc---
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI------AGGAT-AKPFVTHHND-LNMDLYMRIAPELYLKMLVVGG--- 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~------~gga~-a~~F~t~~~~-~~~~~~L~~Spql~lk~l~~~g--- 278 (553)
-.+.+..|...+++.|..+||.||+||++... .|... ...|.. .+. -|..+-||.-.....-++++..
T Consensus 20 e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f-~D~~~g~~l~LRpD~T~~iaR~~a~~~~~ 98 (392)
T PRK12421 20 EAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKL-IDQLSGRLMGVRADITPQVARIDAHLLNR 98 (392)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEE-EcCCCCcEEEECCcCCHHHHHHHHhhcCC
Confidence 34678899999999999999999999999521 12221 223332 233 2566889966666666654422
Q ss_pred --CCcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCcccccccccc
Q psy11418 279 --LDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANARMY 344 (553)
Q Consensus 279 --~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~ 344 (553)
--|.|++|+|||.+........||+|+.+|.-+.+ -.|++.++-+.++.+ ++...++..|.+.+
T Consensus 99 ~~p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~l--gi~~~~l~ig~~~i 168 (392)
T PRK12421 99 EGVARLCYAGSVLHTLPQGLFGSRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNA--GVPALHLDLGHVGI 168 (392)
T ss_pred CCceEEEEeeeEEEcCCCcCCCcCccceeceEEeCCCCchhHHHHHHHHHHHHHHc--CCCCeEEEeCCHHH
Confidence 24999999999999888778899999999987763 558999999999888 66667777776443
|
|
| >PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.2e-06 Score=88.10 Aligned_cols=113 Identities=22% Similarity=0.287 Sum_probs=78.5
Q ss_pred HHHHHHHHHhhhCCeEEEecceecccc-C-----CCCCcceeeccC--CCCcceeee--eCHHHHHHHHHHccCC-cEEE
Q psy11418 216 QIIAYVRRYLDSLGFLEVETPMMNMIA-G-----GATAKPFVTHHN--DLNMDLYMR--IAPELYLKMLVVGGLD-RVYE 284 (553)
Q Consensus 216 ~i~~~ir~fl~~~gF~EV~TPil~~~~-g-----ga~a~~F~t~~~--~~~~~~~L~--~Spql~lk~l~~~g~~-rVfe 284 (553)
.+...||++|...||.|+.+|.|.+.. . -....|-...++ |.+...-|| .||-+..- +-..... |+|+
T Consensus 112 ~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~~~~lLRThTSp~qir~-L~~~~~Pirif~ 190 (339)
T PRK00488 112 QTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYIDDGLLLRTHTSPVQIRT-MEKQKPPIRIIA 190 (339)
T ss_pred HHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEEcCCceeeccCcHHHHHH-HHhcCCCeEEEE
Confidence 456889999999999999999995321 0 000011000001 224445677 45543222 2222222 9999
Q ss_pred EccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhccc
Q psy11418 285 VGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGRK 329 (553)
Q Consensus 285 i~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~~ 329 (553)
+|+|||++..|.+|.|+|+|+|.-.... ++.++...++.+++.++
T Consensus 191 ~G~VyR~D~~DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~f 237 (339)
T PRK00488 191 PGRVYRNDSDDATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFF 237 (339)
T ss_pred eeeEEEcCCCCcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999877764 79999999999999995
|
|
| >cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-06 Score=87.93 Aligned_cols=112 Identities=20% Similarity=0.181 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHhhhCC--eEEEecceeccccCCCCCcceeecc---CCCCcceeeeeCHH----HHHHHHHHcc---
Q psy11418 211 FIVRAQIIAYVRRYLDSLG--FLEVETPMMNMIAGGATAKPFVTHH---NDLNMDLYMRIAPE----LYLKMLVVGG--- 278 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~g--F~EV~TPil~~~~gga~a~~F~t~~---~~~~~~~~L~~Spq----l~lk~l~~~g--- 278 (553)
.+++..|++.+|+.|...| |.||+||+|.+. ..|.+.. +.-+..+|||.... ...++++...
T Consensus 32 ~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~------~mf~~~~g~~d~~~~~~~Lrp~~~~~~~~~~~~~~~~~~~~ 105 (254)
T cd00774 32 VELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE------LMFKTSIGPVESGGNLGYLRPETAQGIFVNFKNLLEFNRRK 105 (254)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEeccccCCH------HHheeeecccCCCCcccccCCcccchHHHHHHHHHHHhCCC
Confidence 4688899999999999885 999999999754 3555431 23356788985443 3344444332
Q ss_pred CC-cEEEEccccccCCCCC---CccCCcceeeeEeccCC------HHHHHHHHHHHHhcc
Q psy11418 279 LD-RVYEVGRQFRNEGIDL---THNPEFTTCEFYMAYAD------YNDLMHLTEDLISGR 328 (553)
Q Consensus 279 ~~-rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a~~~------~~~~m~~~e~li~~~ 328 (553)
+. |+|+||+|||+|.+.. .+.-||||+|+|.-..+ ++.+++...+++..+
T Consensus 106 lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~~~~~~e~~~~v~~~~~~~l~~~ 165 (254)
T cd00774 106 LPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLPKF 165 (254)
T ss_pred CCchhhhhchhhccccCcccceeeeccchhhheeeeECCCCchHHHHHHHHHHHHHHHHc
Confidence 22 9999999999998765 58899999999986542 445555555555444
|
GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly |
| >PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.6e-06 Score=86.52 Aligned_cols=133 Identities=19% Similarity=0.285 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceeccc------cCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccC---
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI------AGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL--- 279 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~------~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~--- 279 (553)
.-.+.+..+.+.+++.|..+||.+|+||++... .|....+.|.. .+.-|..+-||.-.....-++++...
T Consensus 8 ~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~-~D~~G~~l~LR~D~T~~iaR~~a~~~~~~ 86 (311)
T PF13393_consen 8 EEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRF-LDRSGRVLALRPDLTVPIARYVARNLNLP 86 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEE-ECTTSSEEEE-SSSHHHHHHHHHHCCGSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEE-EecCCcEeccCCCCcHHHHHHHHHhcCcC
Confidence 345788999999999999999999999999532 12222234433 34567889999888888888777543
Q ss_pred --CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHh-cccccCCCcccccccccc
Q psy11418 280 --DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLIS-GRKEDRNRPCVMANARMY 344 (553)
Q Consensus 280 --~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~-~~~~~~~~iqv~~n~r~~ 344 (553)
.|+|++|++||.+.....+.-||+|+.+|.-..+ -.|++.++-+++. .+ +++..++..|...+
T Consensus 87 ~~~r~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~~~l--~~~~~~i~i~h~~i 156 (311)
T PF13393_consen 87 RPKRYYYIGPVFRYERPGKGRPREFYQCGFEIIGSSSLEADAEVIKLADEILDREL--GLENFTIRINHTGI 156 (311)
T ss_dssp SSEEEEEEEEEEEEETTTTTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHH--TTTSEEEEEEEHHH
T ss_pred CCceEEEEcceeeccccCCCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHHhhc--CCCCcEEEEcCchh
Confidence 4899999999999888888999999999998764 4488999988886 65 46777777776443
|
... |
| >cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=98.26 E-value=2e-06 Score=74.76 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=58.5
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCC-------CceeEEeeeEEEEeccCCCCCcc
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK-------GELSIIPKKLTLLSPCLHMLPHM 397 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~-------g~~El~~~~i~vl~~~~~~~P~~ 397 (553)
|-.+-++.+.+|++++...-...++++.+++.|+.||+|.|+|.+.+++. +++||.++++++|++|..++|+.
T Consensus 20 Fi~LrD~sg~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~il~~~~~~~P~~ 99 (102)
T cd04320 20 FLVLRQQGYTIQGVLAASAEGVSKQMVKWAGSLSKESIVDVEGTVKKPEEPIKSCTQQDVELHIEKIYVVSEAAEPLPFQ 99 (102)
T ss_pred EEEEecCCceEEEEEeCCcccCCHHHHHHHhcCCCccEEEEEEEEECCCCcccCCCcCcEEEEEEEEEEEecCCCCCCCC
Confidence 34566777889988875321013567788899999999999999987653 88999999999999998889976
Q ss_pred c
Q psy11418 398 H 398 (553)
Q Consensus 398 ~ 398 (553)
.
T Consensus 100 ~ 100 (102)
T cd04320 100 L 100 (102)
T ss_pred C
Confidence 4
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. |
| >PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.4e-06 Score=84.61 Aligned_cols=125 Identities=14% Similarity=0.190 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc--CC-CCCcceeeccCCCCcceeeeeCHHHHHHHHHHccC------C
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GG-ATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL------D 280 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~--gg-a~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~------~ 280 (553)
-...+..+.+.+++.|..+||.||+||++-..+ +. ...+.|.. .+.-|..+-||.-.....-|+++..+ -
T Consensus 18 e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~-~D~~g~~l~LRpD~T~~iaR~~a~~~~~~~~p~ 96 (281)
T PRK12293 18 SAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRF-SDEKNHQISLRADSTLDVVRIVTKRLGRSTEHK 96 (281)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEEE-ECCCCCEEEECCcCCHHHHHHHHHhcccCCCce
Confidence 346788899999999999999999999995321 11 11234432 23456778899777776666655433 2
Q ss_pred cEEEEccccccCCCCCCccCCcceeeeEeccC-CHHHHHHHHHHHHhcccccCCCcccccccccc
Q psy11418 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA-DYNDLMHLTEDLISGRKEDRNRPCVMANARMY 344 (553)
Q Consensus 281 rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~-~~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~ 344 (553)
|.|++|+|||.|. .||+|+.+|.-+. +..|++.++-+.+..+ +++ .++..|.+.+
T Consensus 97 r~~Y~g~vfR~~~------rEf~Q~GvEliG~~~~~Evi~la~~~l~~l--gl~-~~i~ig~~~i 152 (281)
T PRK12293 97 KWFYIQPVFRYPS------NEIYQIGAELIGEEDLSEILNIAAEIFEEL--ELE-PILQISNIKI 152 (281)
T ss_pred eEEEeccEEecCC------CcccccCeEeeCCCCHHHHHHHHHHHHHHc--CCC-CEEEECCHHH
Confidence 8999999999984 6999999999876 5889999999988888 444 3566665443
|
|
| >cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.8e-06 Score=83.23 Aligned_cols=113 Identities=19% Similarity=0.255 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceeccc----cCCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHH----c-
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMI----AGGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVV----G- 277 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~----~- 277 (553)
.+++.+|.+.+++.|.+.||.||.||+|.+. .+|. ..+.|... +..+.+++||...+-.+-.++. .
T Consensus 31 ~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~-d~~~~~l~LrPt~e~~~t~~~~~~i~s~ 109 (255)
T cd00779 31 LRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLK-DRHGKEFLLGPTHEEVITDLVANEIKSY 109 (255)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEe-cCCCCeEEEecCCcHHHHHHHHhccccH
Confidence 4678999999999999999999999999641 1121 12344431 2335678999764432222222 1
Q ss_pred -cCC-cEEEEccccccCCCCC-C--ccCCcceeeeEeccCCHHHHHHHHHHH
Q psy11418 278 -GLD-RVYEVGRQFRNEGIDL-T--HNPEFTTCEFYMAYADYNDLMHLTEDL 324 (553)
Q Consensus 278 -g~~-rVfei~~~FR~E~~~~-~--H~~EFt~lE~e~a~~~~~~~m~~~e~l 324 (553)
.+. |+|++++|||+|.... . +.-||+|+|++....+-.+.....+++
T Consensus 110 ~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i 161 (255)
T cd00779 110 KQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEKM 161 (255)
T ss_pred hhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHHH
Confidence 233 9999999999994443 3 888999999999888654544433333
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes. |
| >PRK12420 histidyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.5e-06 Score=89.93 Aligned_cols=130 Identities=22% Similarity=0.367 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc----c--C-CCC--CcceeeccCCCCcceeeeeCHHHHHHHHHHcc--
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI----A--G-GAT--AKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG-- 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~--g-ga~--a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g-- 278 (553)
-...+..+...+++.|..+||.||.||+|... . | +.. .+.|.. .+.-|..+.||.-.....-++++..
T Consensus 17 ~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~-~D~~g~~l~LRpD~T~~iaR~va~~~~ 95 (423)
T PRK12420 17 EQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTL-TDQGKRDLALRYDLTIPFAKVVAMNPN 95 (423)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEE-ecCCCceecccccccHHHHHHHHhCcC
Confidence 44678889999999999999999999999542 1 1 111 123332 2445778899977777777766642
Q ss_pred C--C-cEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCccccccccc
Q psy11418 279 L--D-RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANARM 343 (553)
Q Consensus 279 ~--~-rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~ 343 (553)
. . |.|++|+|||.|.....+.-||+|+++|.-..+ ..|++.++-+.++.+ ++ ..++..|.+.
T Consensus 96 ~~~p~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~l--g~-~~~i~l~~~~ 164 (423)
T PRK12420 96 IRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRRL--NL-EVTIQYNNRK 164 (423)
T ss_pred CCCCeeEEEEcceECCCCCCCCccceeEECCeeeECCCCCcccHHHHHHHHHHHHHC--CC-CEEEEEcCHH
Confidence 2 2 899999999999988889999999999987653 588999998888887 55 4667676643
|
|
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.1e-06 Score=89.59 Aligned_cols=57 Identities=30% Similarity=0.406 Sum_probs=48.3
Q ss_pred cEEEEccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcccccCCCccccccc
Q psy11418 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGRKEDRNRPCVMANA 341 (553)
Q Consensus 281 rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~~~~~~~iqv~~n~ 341 (553)
|+|.||+|||+|..|++|+|||.|+|.-.... ++.+++.++++++..+ +. .++...+
T Consensus 344 k~fsigrVfR~d~iDatH~~eFhQ~EG~vvd~~~t~~~L~g~l~~f~~~l--g~--~~~RfrP 402 (492)
T PLN02853 344 RYFSIDRVFRNEAVDRTHLAEFHQVEGLVCDRGLTLGDLIGVLEDFFSRL--GM--TKLRFKP 402 (492)
T ss_pred EEEeccceecCCCCCcccCccceeEEEEEEeCCCCHHHHHHHHHHHHHHc--CC--ceEEEec
Confidence 99999999999999999999999999887754 7999999999999886 33 4444444
|
|
| >cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.7e-06 Score=85.41 Aligned_cols=116 Identities=16% Similarity=0.104 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceeccc----c-CCC----CCcceeeccC---CCCcceeeeeCHHHHHHHHHHcc
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMI----A-GGA----TAKPFVTHHN---DLNMDLYMRIAPELYLKMLVVGG 278 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~-gga----~a~~F~t~~~---~~~~~~~L~~Spql~lk~l~~~g 278 (553)
.+++.+|++.+++.+.+.||.||.||+|.+. . +|- ..+.|..... ..+.+++|+-..|-.+-.+++.-
T Consensus 32 ~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~~ 111 (261)
T cd00778 32 YAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMFSKW 111 (261)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHHHHhh
Confidence 4688899999999999999999999999642 1 221 1234443110 11247899977554443333221
Q ss_pred ------CC-cEEEEccccccCCCCC---CccCCcceeeeEeccCCHHHHHHHHHHHHh
Q psy11418 279 ------LD-RVYEVGRQFRNEGIDL---THNPEFTTCEFYMAYADYNDLMHLTEDLIS 326 (553)
Q Consensus 279 ------~~-rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~~e~li~ 326 (553)
+. |+|++++|||+|..++ -+.-||+|.|.+..+.+.++..+..++++.
T Consensus 112 i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~ 169 (261)
T cd00778 112 IRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILD 169 (261)
T ss_pred ccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHH
Confidence 22 8899999999999885 378899999999999987777777776653
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria. |
| >COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.14 E-value=7e-06 Score=85.22 Aligned_cols=111 Identities=25% Similarity=0.346 Sum_probs=74.9
Q ss_pred HHHHHHHHhhhCCeEEEecceeccccCC--C----CCcceeeccC--CCCcc---eeee--eCHHHHHHHHHHcc---CC
Q psy11418 217 IIAYVRRYLDSLGFLEVETPMMNMIAGG--A----TAKPFVTHHN--DLNMD---LYMR--IAPELYLKMLVVGG---LD 280 (553)
Q Consensus 217 i~~~ir~fl~~~gF~EV~TPil~~~~gg--a----~a~~F~t~~~--~~~~~---~~L~--~Spql~lk~l~~~g---~~ 280 (553)
++..++++|.+.||.+++.|-+.+..-. + --.|...-++ |++.+ .-|| .||-.-. .+... =-
T Consensus 116 ~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHTs~vq~R--~l~~~~~~P~ 193 (335)
T COG0016 116 TIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKDDREKLLLRTHTSPVQAR--TLAENAKIPI 193 (335)
T ss_pred HHHHHHHHHHHcCceeccCCcccccccchhhhcCCCCCCcccccceEEEcCCCCceeecccCcHhhHH--HHHhCCCCCc
Confidence 4688999999999999999977432111 0 0112211111 22222 3565 3332221 22232 34
Q ss_pred cEEEEccccccCCCCCCccCCcceeeeEecc--CCHHHHHHHHHHHHhccc
Q psy11418 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAY--ADYNDLMHLTEDLISGRK 329 (553)
Q Consensus 281 rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~--~~~~~~m~~~e~li~~~~ 329 (553)
|+|.+|+|||+|..|++|+|||+|+|.-... .++.+++.+++++++.++
T Consensus 194 k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~f 244 (335)
T COG0016 194 KIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFF 244 (335)
T ss_pred eEecccceecCCCCCcccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999965543 379999999999999995
|
|
| >cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.1e-06 Score=73.02 Aligned_cols=73 Identities=22% Similarity=0.276 Sum_probs=58.1
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC--CCceeEEeeeEEEEeccCCCCCcccc
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSIIPKKLTLLSPCLHMLPHMHF 399 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~--~g~~El~~~~i~vl~~~~~~~P~~~~ 399 (553)
|-.+-++.+.+|+++.... ..++++.+++.|+.||+|.|+|.+.+++ .+++||.++++++|+++..++|+++.
T Consensus 32 Fi~LrD~~g~iQ~v~~~~~--~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~Ei~~~~i~il~~~~~~~P~~~~ 106 (108)
T cd04316 32 FVILRDREGIVQVTAPKKK--VDKELFKTVRKLSRESVISVTGTVKAEPKAPNGVEIIPEEIEVLSEAKTPLPLDPT 106 (108)
T ss_pred EEEEecCCeeEEEEEeCCC--CCHHHHHHHhCCCCcCEEEEEEEEEeCCCCCCCEEEEEeEEEEEeCCCCCCCcCcC
Confidence 4455666777888876432 2355777889999999999999998776 47899999999999999888997654
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes. |
| >PRK09194 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.4e-05 Score=89.99 Aligned_cols=108 Identities=22% Similarity=0.234 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc----cCC----CCCcceeeccCCCCcceeeeeCHHHHHHHHHHc----
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI----AGG----ATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG---- 277 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~gg----a~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~---- 277 (553)
-++++.+|.+.+|+.|.+.||.||.||+|.+. .+| -..+.|... +..+.+++||-..+-..-.++..
T Consensus 46 g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~-d~~~~~l~LrPt~e~~~~~~~~~~~~s 124 (565)
T PRK09194 46 GLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLK-DRHGRDFVLGPTHEEVITDLVRNEIKS 124 (565)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEEe-cCCCCEEEECCCChHHHHHHHHhhhhh
Confidence 34689999999999999999999999999632 122 112345432 34567899996444332222221
Q ss_pred --cC-CcEEEEccccccCCCCC-C--ccCCcceeeeEeccCCHHHHH
Q psy11418 278 --GL-DRVYEVGRQFRNEGIDL-T--HNPEFTTCEFYMAYADYNDLM 318 (553)
Q Consensus 278 --g~-~rVfei~~~FR~E~~~~-~--H~~EFt~lE~e~a~~~~~~~m 318 (553)
.+ -|.|+|+++||.|.... . +.-||+|.|.|....+-++..
T Consensus 125 ~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~ 171 (565)
T PRK09194 125 YKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLD 171 (565)
T ss_pred cccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHH
Confidence 12 29999999999994333 3 788999999999887544433
|
|
| >cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.2e-05 Score=81.28 Aligned_cols=127 Identities=18% Similarity=0.190 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHc-----
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG----- 277 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~----- 277 (553)
.+++..|.+.+++.+.+.||.||.||+|...+ +|- ..+.|... .-+.+++||-..+-..-++.+.
T Consensus 30 ~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~--~~~~~l~LRP~~~~~~~~~~~~~~~s~ 107 (298)
T cd00771 30 AIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFE--EEDEEYGLKPMNCPGHCLIFKSKPRSY 107 (298)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEec--cCCceEEEcccCCHHHHHHHHhhccch
Confidence 46788999999999999999999999995321 121 12344432 2346789996555444333332
Q ss_pred -cCC-cEEEEccccccCCCCC----CccCCcceeeeEeccCC------HHHHHHHHHHHHhcccccCCCccccccc
Q psy11418 278 -GLD-RVYEVGRQFRNEGIDL----THNPEFTTCEFYMAYAD------YNDLMHLTEDLISGRKEDRNRPCVMANA 341 (553)
Q Consensus 278 -g~~-rVfei~~~FR~E~~~~----~H~~EFt~lE~e~a~~~------~~~~m~~~e~li~~~~~~~~~iqv~~n~ 341 (553)
.+. |+|++|+|||+|.... .+..||+|.|.+..... ..+++++++++++.+ ++....+..+.
T Consensus 108 ~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~e~~e~l~~~~~~l~~l--gl~~~~i~l~~ 181 (298)
T cd00771 108 RDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDF--GFFDYKVELST 181 (298)
T ss_pred hhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHHHHHHHHHHHHHHHHHc--CCCcEEEEEEc
Confidence 223 9999999999998753 36789999999986432 335777777777776 44444444443
|
ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.2e-05 Score=88.06 Aligned_cols=126 Identities=16% Similarity=0.160 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc----cCC----CCCcceeeccCCCCcceeeeeCHHHH----HHHHHHc
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI----AGG----ATAKPFVTHHNDLNMDLYMRIAPELY----LKMLVVG 277 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~gg----a~a~~F~t~~~~~~~~~~L~~Spql~----lk~l~~~ 277 (553)
-.+++.+|.+.+|+.|.+.||.||.||+|.+. .+| -..+.|... +..+.+++||-..|-. ..+.+.+
T Consensus 46 g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~-dr~~~~l~LrPT~Ee~~t~~~~~~i~s 124 (568)
T TIGR00409 46 GLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLK-DRKGREFVLGPTHEEVITDLARNEIKS 124 (568)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEEe-cCCCCEEEEcCCCcHHHHHHHHHHHhh
Confidence 35688999999999999999999999999752 111 123455542 3456789999652222 1222222
Q ss_pred --cCC-cEEEEccccccCC-CCCC--ccCCcceeeeEeccCCHHHHHHHHHHHH---hcccccCCCcc
Q psy11418 278 --GLD-RVYEVGRQFRNEG-IDLT--HNPEFTTCEFYMAYADYNDLMHLTEDLI---SGRKEDRNRPC 336 (553)
Q Consensus 278 --g~~-rVfei~~~FR~E~-~~~~--H~~EFt~lE~e~a~~~~~~~m~~~e~li---~~~~~~~~~iq 336 (553)
.+. |+|+|+++||+|. .... +..||+|.|.|....+.++.....+.++ ..+++.++...
T Consensus 125 yr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~LgL~~ 192 (568)
T TIGR00409 125 YKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRLGLDF 192 (568)
T ss_pred ccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 233 9999999999994 3333 8889999999998887555544444332 44444445443
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi. |
| >PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.4e-05 Score=83.44 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhhhCCeEEEecceeccc------cCCCC-CcceeeccCCCCcceeeeeCHHHHHHHHHHc----cCCcEE
Q psy11418 215 AQIIAYVRRYLDSLGFLEVETPMMNMI------AGGAT-AKPFVTHHNDLNMDLYMRIAPELYLKMLVVG----GLDRVY 283 (553)
Q Consensus 215 s~i~~~ir~fl~~~gF~EV~TPil~~~------~gga~-a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~----g~~rVf 283 (553)
..+.+.+++.|..+||.||+||++... .|... ...|.. .+.-|..+.||.-.....-++++. .-.|.|
T Consensus 8 ~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f-~D~~G~~l~LRpD~T~piaR~~~~~~~~~p~R~~ 86 (373)
T PRK12295 8 AAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVT-SDENGEELCLRPDFTIPVCRRHIATAGGEPARYA 86 (373)
T ss_pred HHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEE-ECCCCCEEeeCCCCcHHHHHHHHHcCCCCCeEEE
Confidence 377889999999999999999999532 12221 223432 234467888996666666654433 123899
Q ss_pred EEccccccCCCCCCccCCcceeeeEeccC-C----HHHHHHHHHHHHhcccccCCCcccccccccc
Q psy11418 284 EVGRQFRNEGIDLTHNPEFTTCEFYMAYA-D----YNDLMHLTEDLISGRKEDRNRPCVMANARMY 344 (553)
Q Consensus 284 ei~~~FR~E~~~~~H~~EFt~lE~e~a~~-~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~ 344 (553)
++|+|||.| ..+..||||+.+|.-+. + ..|++.++-+.+..+ ++...++..|.+.+
T Consensus 87 Y~g~VfR~~---~gr~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~l--gl~~~~i~ig~~~i 147 (373)
T PRK12295 87 YLGEVFRQR---RDRASEFLQAGIESFGRADPAAADAEVLALALEALAAL--GPGDLEVRLGDVGL 147 (373)
T ss_pred EEccEEECC---CCCCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHc--CCCceEEEeCCHHH
Confidence 999999999 34678999999999874 3 458999999999888 66667777666443
|
|
| >PLN02788 phenylalanine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.7e-05 Score=83.17 Aligned_cols=113 Identities=18% Similarity=0.206 Sum_probs=76.6
Q ss_pred HHHHHHHHhhhC---CeEEEe--cceeccccCC-----CCCcceeec--cCCCCcceeeeeCHHHHHHHHHHccCCcEEE
Q psy11418 217 IIAYVRRYLDSL---GFLEVE--TPMMNMIAGG-----ATAKPFVTH--HNDLNMDLYMRIAPELYLKMLVVGGLDRVYE 284 (553)
Q Consensus 217 i~~~ir~fl~~~---gF~EV~--TPil~~~~gg-----a~a~~F~t~--~~~~~~~~~L~~Spql~lk~l~~~g~~rVfe 284 (553)
+++.|+++|... ||.+++ .|+.+.-.+- ..-.|=... .-|.+...-||.-.--+--+++..+-.|++.
T Consensus 73 ~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~~~~lLRTHTSa~q~~~l~~~~~~~~~ 152 (402)
T PLN02788 73 LKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVDAQTVLRCHTSAHQAELLRAGHTHFLV 152 (402)
T ss_pred HHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEecCCccccCCCcHHHHHHHHhCCCcEEE
Confidence 457778888886 999998 6765421110 000011000 1144566667743333333344456789999
Q ss_pred EccccccCCCCCCccCCcceeeeEecc--------------CCHHHHHHHHHHHHhccc
Q psy11418 285 VGRQFRNEGIDLTHNPEFTTCEFYMAY--------------ADYNDLMHLTEDLISGRK 329 (553)
Q Consensus 285 i~~~FR~E~~~~~H~~EFt~lE~e~a~--------------~~~~~~m~~~e~li~~~~ 329 (553)
+|+|||+|.+|++|.|+|.|+|.-..+ .+..++...+|.++..++
T Consensus 153 ~g~VyRrD~iD~tH~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~~dLKg~Le~l~~~lf 211 (402)
T PLN02788 153 TGDVYRRDSIDATHYPVFHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLEGLARHLF 211 (402)
T ss_pred EeeEeecCCCCcccCccceeEEEEEEecccccccccccccccCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999988776 347889999999998775
|
|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.4e-05 Score=88.02 Aligned_cols=131 Identities=19% Similarity=0.197 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHc---
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG--- 277 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~--- 277 (553)
.-.+++..|.+.+++.+...||.||.||+|...+ +|. .-+.|.. .+.-|..+.||.-..-..-++.+.
T Consensus 268 ~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~-~d~~~~~~~LRP~~~~~~~r~~~~~~~ 346 (638)
T PRK00413 268 KGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPT-TESDGEEYALKPMNCPGHVQIYKQGLR 346 (638)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhcccee-ecCCCcEEEEecCCcHHHHHHHhCcCC
Confidence 3456899999999999999999999999994321 221 1234543 133467889996544443333332
Q ss_pred ---cCC-cEEEEccccccCCCCC----CccCCcceeeeEeccC------CHHHHHHHHHHHHhcccccCCCcccccccc
Q psy11418 278 ---GLD-RVYEVGRQFRNEGIDL----THNPEFTTCEFYMAYA------DYNDLMHLTEDLISGRKEDRNRPCVMANAR 342 (553)
Q Consensus 278 ---g~~-rVfei~~~FR~E~~~~----~H~~EFt~lE~e~a~~------~~~~~m~~~e~li~~~~~~~~~iqv~~n~r 342 (553)
.+. |.|++|+|||+|.+.. .+.-||||+|++.-.. +..+++.++.+++..+ ++....+..|.+
T Consensus 347 s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e~~eii~l~~~~~~~l--g~~~~~i~l~~r 423 (638)
T PRK00413 347 SYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKKVIDLILDVYKDF--GFEDYEVKLSTR 423 (638)
T ss_pred ChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHc--CCceEEEEEecC
Confidence 222 9999999999998863 3678999999998433 1266888888888777 555556666653
|
|
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.8e-05 Score=88.23 Aligned_cols=113 Identities=15% Similarity=0.179 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC-
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL- 279 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~- 279 (553)
.-.+++.+|++.+|+.+.++||.||.||.|.+.. +|- ....|.. +.-+.+++|+--.+-.+-.+.....
T Consensus 319 ~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~--~~~~~~~~Lrp~~~~~~~~~~~~~~~ 396 (686)
T PLN02908 319 HGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVF--EIEKQEFGLKPMNCPGHCLMFAHRVR 396 (686)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEE--ecCCeeEEEcCCCcHHHHHHHhcccc
Confidence 4468899999999999999999999999995321 111 1133433 2235788999766555554443321
Q ss_pred -----C-cEEEEccccccCCCCC----CccCCcceeeeEeccCCHHHHHHHHHHH
Q psy11418 280 -----D-RVYEVGRQFRNEGIDL----THNPEFTTCEFYMAYADYNDLMHLTEDL 324 (553)
Q Consensus 280 -----~-rVfei~~~FR~E~~~~----~H~~EFt~lE~e~a~~~~~~~m~~~e~l 324 (553)
. |+|++|+|||+|.+.. .+..||+|.|++. |...+++.+.++++
T Consensus 397 s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~~e~~~~ 450 (686)
T PLN02908 397 SYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIKDEVKGV 450 (686)
T ss_pred ChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHHHHHHHH
Confidence 1 8999999999999852 5888999999999 76645544444443
|
|
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.94 E-value=5e-05 Score=85.39 Aligned_cols=129 Identities=18% Similarity=0.198 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc----cCCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHcc---
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI----AGGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG--- 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g--- 278 (553)
-.+++..|.+.+|+.+...||.||.||+|... .+|- ..+.|.. .+.-|..++||...+-..-++++..
T Consensus 199 g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~-~d~~~~~~~LrP~~~~~i~~~~~~~~~s 277 (563)
T TIGR00418 199 GATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPF-TELDNREFMLKPMNCPGHFLIFKSSLRS 277 (563)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhccee-ccCCCceEEEecCCCHHHHHHHhCcCCC
Confidence 45688999999999999999999999999532 1221 1123322 1234578999977666655544432
Q ss_pred ---CC-cEEEEccccccCCCCC----CccCCcceeeeEeccC------CHHHHHHHHHHHHhcccccCCCccccccc
Q psy11418 279 ---LD-RVYEVGRQFRNEGIDL----THNPEFTTCEFYMAYA------DYNDLMHLTEDLISGRKEDRNRPCVMANA 341 (553)
Q Consensus 279 ---~~-rVfei~~~FR~E~~~~----~H~~EFt~lE~e~a~~------~~~~~m~~~e~li~~~~~~~~~iqv~~n~ 341 (553)
+. |+|++|+|||+|.... -+.-||+|.|+|.-.. .+.+++.++.++++.+ ++....+..|.
T Consensus 278 ~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~~~~~~~e~~~~i~~~~~~~~~l--gl~~~~~~l~~ 352 (563)
T TIGR00418 278 YRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYSDF--GFSFDKYELST 352 (563)
T ss_pred hHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcCHHHHHHHHHHHHHHHHHHHHHc--CCCeEEEEEeC
Confidence 22 9999999999996542 2788999999998654 1455888888877766 44433344543
|
This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether.. |
| >PRK14799 thrS threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=3e-05 Score=86.42 Aligned_cols=105 Identities=20% Similarity=0.179 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc----cCCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHccCC-
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI----AGGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLD- 280 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~- 280 (553)
-.++|..|.+.+|+.+.++||.||.||+|... .+|- ....|.. +.-+.+++||.-.+-..-++......
T Consensus 167 G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~--~~~~e~~~LrPm~cp~~~~~~~~~~~S 244 (545)
T PRK14799 167 GQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVF--NMEGDEYGVKPMNCPAHILIYKSKPRT 244 (545)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhccee--eccCceEEeccCCCHHHHHHHhccccC
Confidence 45789999999999999999999999999421 1211 1122332 23357899997766665554443321
Q ss_pred ------cEEEEccccccCCCCC----CccCCcceeeeEeccCCHHHH
Q psy11418 281 ------RVYEVGRQFRNEGIDL----THNPEFTTCEFYMAYADYNDL 317 (553)
Q Consensus 281 ------rVfei~~~FR~E~~~~----~H~~EFt~lE~e~a~~~~~~~ 317 (553)
|.|++|+|||+|.+.. .+..||||.|+.. |.+.+++
T Consensus 245 yrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~~~~q~ 290 (545)
T PRK14799 245 YRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FLREDQL 290 (545)
T ss_pred hhhCCHhhEEecceecCCCCCCccccccceeEEEcccEE-EeCHHHH
Confidence 8999999999999986 5889999999998 7765444
|
|
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.6e-05 Score=85.92 Aligned_cols=130 Identities=18% Similarity=0.192 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc----cCCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHc----
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI----AGGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG---- 277 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~---- 277 (553)
-.+++..|.+.+++.+...||.||.||+|... .+|. ..+.|... +.-|..++||.-..-..-++.+.
T Consensus 205 ~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~-d~~~~~~~LRP~~~~~~~~~~~~~~~s 283 (575)
T PRK12305 205 GAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPM-EIDEEEYYLKPMNCPGHILIYKSRLRS 283 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhccccc-ccCCceEEEecCCCHHHHHHHhcccCC
Confidence 45789999999999999999999999999532 1221 12344331 23467899995443333233332
Q ss_pred --cCC-cEEEEccccccCCCCC----CccCCcceeeeEeccC------CHHHHHHHHHHHHhcccccCCCcccccccc
Q psy11418 278 --GLD-RVYEVGRQFRNEGIDL----THNPEFTTCEFYMAYA------DYNDLMHLTEDLISGRKEDRNRPCVMANAR 342 (553)
Q Consensus 278 --g~~-rVfei~~~FR~E~~~~----~H~~EFt~lE~e~a~~------~~~~~m~~~e~li~~~~~~~~~iqv~~n~r 342 (553)
.+. |.|++|+|||+|.+.. .+..||+|+|++.-.. .+.++++++.+++..+ ++....+..+.+
T Consensus 284 ~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~~~~~~e~~e~i~l~~~~~~~l--gl~~~~i~l~~r 359 (575)
T PRK12305 284 YRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTPDQIEDEILKVLDFVLELLKDF--GFKDYYLELSTR 359 (575)
T ss_pred hhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCHHHHHHHHHHHHHHHHHHHHHc--CCCeEEEEEeCC
Confidence 223 9999999999998853 3678999999996433 1367777777777776 555455656654
|
|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.1e-05 Score=85.99 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC---
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL--- 279 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~--- 279 (553)
..++..|.+.+++.+.+.||.||.||+|.+.. +|- ..+.|.+ +.-+..++||...+-..-++....+
T Consensus 274 ~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~--d~~~~~~~LrP~~~~~~~~~~~~~~~sy 351 (639)
T PRK12444 274 QIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYFS--EVDNKSFALKPMNCPGHMLMFKNKLHSY 351 (639)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcCee--cCCCcEEEEccCCCHHHHHHHhCcccCh
Confidence 35677799999999999999999999995321 121 1123321 2235678899777666665554433
Q ss_pred ----CcEEEEccccccCCCCC----CccCCcceeeeEeccCC-------HHHHHHHHHHHHhcc
Q psy11418 280 ----DRVYEVGRQFRNEGIDL----THNPEFTTCEFYMAYAD-------YNDLMHLTEDLISGR 328 (553)
Q Consensus 280 ----~rVfei~~~FR~E~~~~----~H~~EFt~lE~e~a~~~-------~~~~m~~~e~li~~~ 328 (553)
-|.|++|+|||.|.+.. .+.-||+|.|++ .|.+ +.++++++++++..+
T Consensus 352 ~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~-~f~~~~~~~~e~~~~~~~~~~i~~~l 414 (639)
T PRK12444 352 RELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPDQIEDEIKSVMAQIDYVYKTF 414 (639)
T ss_pred hhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEE-EECCHHHHHHHHHHHHHHHHHHHHHc
Confidence 29999999999999763 277899999999 5776 334666666666555
|
|
| >PRK08661 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=7.9e-05 Score=82.14 Aligned_cols=115 Identities=17% Similarity=0.109 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc-----cCCC----CCcceeecc-C--CCCcceeeeeCHHHHH----HH
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI-----AGGA----TAKPFVTHH-N--DLNMDLYMRIAPELYL----KM 273 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-----~gga----~a~~F~t~~-~--~~~~~~~L~~Spql~l----k~ 273 (553)
-.+++..|.+.+++.|.+.||.||.||+|.+. .+|- ..+.|.+.. . .++.+++||...+-.. ++
T Consensus 43 g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~ 122 (477)
T PRK08661 43 GYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKK 122 (477)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHHh
Confidence 34788999999999999999999999999532 1221 124454421 1 2357899997663322 22
Q ss_pred HHHc--cCC-cEEEEccccccCCCCCC---ccCCcceeeeEeccCCHHHHHHHHHHHH
Q psy11418 274 LVVG--GLD-RVYEVGRQFRNEGIDLT---HNPEFTTCEFYMAYADYNDLMHLTEDLI 325 (553)
Q Consensus 274 l~~~--g~~-rVfei~~~FR~E~~~~~---H~~EFt~lE~e~a~~~~~~~m~~~e~li 325 (553)
.+.+ .+. |+|++++|||+|.. ++ +.-||+|.|.+.++.+.++.....+.++
T Consensus 123 ~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l 179 (477)
T PRK08661 123 WIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEETLEML 179 (477)
T ss_pred hhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHH
Confidence 2222 122 89999999999998 54 7889999999999998777766666554
|
|
| >TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I | Back alignment and domain information |
|---|
Probab=97.77 E-value=6.4e-05 Score=82.72 Aligned_cols=114 Identities=21% Similarity=0.171 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHhhhCCeEEEecceeccc-----cCCC----CCcceeeccC---CCCcceeeeeCHHHHHHHHHHcc-
Q psy11418 212 IVRAQIIAYVRRYLDSLGFLEVETPMMNMI-----AGGA----TAKPFVTHHN---DLNMDLYMRIAPELYLKMLVVGG- 278 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-----~gga----~a~~F~t~~~---~~~~~~~L~~Spql~lk~l~~~g- 278 (553)
+++..|...+++-+.+.||.||.||+|.+. .|+- ..+.|.+... ..+.+++||...+-.+-.++..-
T Consensus 39 ~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~i 118 (472)
T TIGR00408 39 KIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKWV 118 (472)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhccc
Confidence 568899999999999999999999999532 1221 2245544221 13578999977665544322221
Q ss_pred -----CC-cEEEEccccccCCCCC---CccCCcceeeeEeccCCHHHHHHHHHHHH
Q psy11418 279 -----LD-RVYEVGRQFRNEGIDL---THNPEFTTCEFYMAYADYNDLMHLTEDLI 325 (553)
Q Consensus 279 -----~~-rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~~e~li 325 (553)
+. |+|++++|||+|...+ -+..||+|-|.+.++.+.++.....+.++
T Consensus 119 ~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l 174 (472)
T TIGR00408 119 KSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRAL 174 (472)
T ss_pred cChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHH
Confidence 22 8999999999999875 37889999999999998777665555544
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. |
| >KOG1936|consensus | Back alignment and domain information |
|---|
Probab=97.76 E-value=9e-05 Score=78.10 Aligned_cols=134 Identities=13% Similarity=0.210 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceec------cccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHcc-C--
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMN------MIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG-L-- 279 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~------~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g-~-- 279 (553)
+-+.+|..|++.+.+.|..+|..+|+||++- ...|+.. +....--+..|.-+.||-.-...+.|+++.. .
T Consensus 72 ~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEds-kLiYdlkDQGGEl~SLRYDLTVPfARylAmNki~s 150 (518)
T KOG1936|consen 72 EQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDS-KLIYDLKDQGGELCSLRYDLTVPFARYLAMNKITS 150 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhccccc-ceeEehhhcCCcEEEeecccccHHHHHHHHccccc
Confidence 3457899999999999999999999999983 3455543 5544444566777889988888888877654 1
Q ss_pred CcEEEEccccccCCCC--CCccCCcceeeeEeccC-----CHHHHHHHHHHHHhcccccCCCccccccccccc
Q psy11418 280 DRVYEVGRQFRNEGID--LTHNPEFTTCEFYMAYA-----DYNDLMHLTEDLISGRKEDRNRPCVMANARMYQ 345 (553)
Q Consensus 280 ~rVfei~~~FR~E~~~--~~H~~EFt~lE~e~a~~-----~~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~~ 345 (553)
-+-|.|+++||-+... ..+.-||+||||..|+. .-.|.+..+-+++..+ +++..-|..|-|++.
T Consensus 151 ikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~~l--~Igd~~iKvNhRkiL 221 (518)
T KOG1936|consen 151 IKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEILSRL--GIGDYGIKVNHRKIL 221 (518)
T ss_pred ceeeeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHHhhc--CccceEEEecHHHHH
Confidence 1569999999988774 35899999999999973 3778888888899888 888888899988775
|
|
| >TIGR00414 serS seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00016 Score=78.48 Aligned_cols=112 Identities=19% Similarity=0.257 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc---c-CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC--
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI---A-GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL-- 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~---~-gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~-- 279 (553)
-.++..++++.+++.+.+.||.||.||.|.+. . +|- ..+.|.+. +.++||+...|..+-.+...-.
T Consensus 172 g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~----~~~~~L~pTsE~~~~~~~~~~i~s 247 (418)
T TIGR00414 172 GAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLE----DTDLYLIPTAEVPLTNLHRNEILE 247 (418)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEec----CCCEEEEeCCcHHHHHHHhCcCCC
Confidence 45788999999999999999999999999642 1 111 12334332 4678999888777765544322
Q ss_pred -----CcEEEEccccccCCC----CC---CccCCcceeeeEeccCCHHHHHHHHHHHHh
Q psy11418 280 -----DRVYEVGRQFRNEGI----DL---THNPEFTTCEFYMAYADYNDLMHLTEDLIS 326 (553)
Q Consensus 280 -----~rVfei~~~FR~E~~----~~---~H~~EFt~lE~e~a~~~~~~~m~~~e~li~ 326 (553)
-|+|++++|||+|.. ++ -+.-||+|.|.+ .|.+-++..+..++++.
T Consensus 248 ~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~-~f~~~e~s~~~~~~~~~ 305 (418)
T TIGR00414 248 EEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELV-KFCKPEESAEELEEMTS 305 (418)
T ss_pred hHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEE-EEcCHHHHHHHHHHHHH
Confidence 289999999999974 23 378899999995 47765555555555443
|
This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model. |
| >PRK12325 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00014 Score=79.33 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceeccc----cCCC----CCcceeeccCCCCcceeeeeCH-H----HHHHHHHH-
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMI----AGGA----TAKPFVTHHNDLNMDLYMRIAP-E----LYLKMLVV- 276 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~gga----~a~~F~t~~~~~~~~~~L~~Sp-q----l~lk~l~~- 276 (553)
.+++.+|.+.+|+.+.+.||.||.||+|.+. .+|- ..+.|... +..+.+++|+.-. + ++......
T Consensus 47 ~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~-d~~~~~~~L~Pt~e~~~~~~~~~~~~sy 125 (439)
T PRK12325 47 LKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIK-DRHDREMLYGPTNEEMITDIFRSYVKSY 125 (439)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEEe-cCCCCEEEEcCCCcHHHHHHHHHHhhhc
Confidence 5789999999999999999999999999643 1111 12445432 2346778888533 2 22222211
Q ss_pred ccC-CcEEEEccccccCCCCC---CccCCcceeeeEeccCCHHHHHHHHHHHH
Q psy11418 277 GGL-DRVYEVGRQFRNEGIDL---THNPEFTTCEFYMAYADYNDLMHLTEDLI 325 (553)
Q Consensus 277 ~g~-~rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~~e~li 325 (553)
..+ -|+|++|++||+|.... .+..||+|-|.|....+.+++.+..++++
T Consensus 126 rdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~ 178 (439)
T PRK12325 126 KDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMF 178 (439)
T ss_pred hhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHHHHH
Confidence 112 29999999999996653 27889999999998788665555444443
|
|
| >PRK05431 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00022 Score=77.47 Aligned_cols=112 Identities=18% Similarity=0.215 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHhh-hCCeEEEecceeccc---cCCCC-----CcceeeccCCCCcceeeeeCHHHHHHHHHHccC-
Q psy11418 210 KFIVRAQIIAYVRRYLD-SLGFLEVETPMMNMI---AGGAT-----AKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL- 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~-~~gF~EV~TPil~~~---~gga~-----a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~- 279 (553)
-.++..++++.+++.+. +.||.||.||.|... .+.+. ...|.+. +.++||+...|..+-.+.....
T Consensus 169 ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~----~~~~~L~pTsE~~l~~l~~~~~~ 244 (425)
T PRK05431 169 GARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIE----DDDLYLIPTAEVPLTNLHRDEIL 244 (425)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEec----CCCEEEEeCCcHHHHHHHhcccC
Confidence 34688889999999998 999999999999642 12111 1234332 4678999888887766655432
Q ss_pred ------CcEEEEccccccCCCC----C---CccCCcceeeeEeccCCHHHHHHHHHHHHh
Q psy11418 280 ------DRVYEVGRQFRNEGID----L---THNPEFTTCEFYMAYADYNDLMHLTEDLIS 326 (553)
Q Consensus 280 ------~rVfei~~~FR~E~~~----~---~H~~EFt~lE~e~a~~~~~~~m~~~e~li~ 326 (553)
-|+|++++|||.|... + -+.-||+|.|.+ .|..-++..+..++++.
T Consensus 245 s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~~e~s~~~~~~~l~ 303 (425)
T PRK05431 245 DEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTKPEDSYAELEELTA 303 (425)
T ss_pred CHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEECHHHHHHHHHHHHH
Confidence 2999999999999853 3 277899999999 56655655555555543
|
|
| >PRK03991 threonyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00025 Score=80.30 Aligned_cols=126 Identities=22% Similarity=0.242 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceeccc---c-----CCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccC-
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI---A-----GGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL- 279 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~---~-----gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~- 279 (553)
.-.+++..|.+.+++.+.+.||.+|.||.|... . .+=..+.|.+.. -+.+++||...+...-.+.....
T Consensus 225 ~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~--~~e~l~Lrp~~c~~~~~~~~~~~~ 302 (613)
T PRK03991 225 KGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKS--DKKDLMLRFAACFGQFLMLKDMTI 302 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecC--CCceEEEecCCCHHHHHHHhCCcC
Confidence 456899999999999999999999999999311 1 111235565432 24678999766544432222211
Q ss_pred ------CcEEEEcc-ccccCCCCC----CccCCcceeeeEeccCCHHHHHHHHHHHHhc---ccccCCCcc
Q psy11418 280 ------DRVYEVGR-QFRNEGIDL----THNPEFTTCEFYMAYADYNDLMHLTEDLISG---RKEDRNRPC 336 (553)
Q Consensus 280 ------~rVfei~~-~FR~E~~~~----~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~---~~~~~~~iq 336 (553)
-|+|++|+ |||+|.+.. .+..||||.|.+..-.+.++.++..++++.. +.+.++...
T Consensus 303 SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~~~lGl~~ 373 (613)
T PRK03991 303 SYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETGEDLGRDY 373 (613)
T ss_pred chhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 28999999 999998753 4888999999999777777777666665544 334444444
|
|
| >KOG2784|consensus | Back alignment and domain information |
|---|
Probab=97.63 E-value=7.1e-05 Score=77.23 Aligned_cols=52 Identities=29% Similarity=0.479 Sum_probs=47.2
Q ss_pred ccCC--cEEEEccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 277 GGLD--RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 277 ~g~~--rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
.||. |.|.|-++||||..|++|++||.|+|--.+.. ++.|+|.+.++++..+
T Consensus 329 ~~f~p~K~FSIDrVFRNEtvDaTHLAEFHQVEGviad~gltLgdLig~l~~ff~~l 384 (483)
T KOG2784|consen 329 KGFKPAKYFSIDRVFRNETVDATHLAEFHQVEGVIADKGLTLGDLIGILMEFFTKL 384 (483)
T ss_pred CCCCcccccchhhhhhccccchHHHHHHhhhceeeecCCCcHHHHHHHHHHHHhcc
Confidence 4553 99999999999999999999999999999866 6999999999999877
|
|
| >cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00025 Score=73.42 Aligned_cols=111 Identities=19% Similarity=0.284 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC--
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL-- 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~-- 279 (553)
-.+++.+|.+.+++.+.+.||.||.||.|.+.. +|- ..+.|.+. +.+++|+-..+..+-.++....
T Consensus 51 g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~----~~~~~L~pt~e~~~~~l~~~~~~s 126 (297)
T cd00770 51 GALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVE----GEDLYLIATAEVPLAALHRDEILE 126 (297)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEec----CCCEEEeecCCHHHHHHHhcccCC
Confidence 457889999999999999999999999996421 111 12344432 3678999888877776654422
Q ss_pred -----CcEEEEccccccCCCC----C---CccCCcceeeeEeccCCHHHHHHHHHHHH
Q psy11418 280 -----DRVYEVGRQFRNEGID----L---THNPEFTTCEFYMAYADYNDLMHLTEDLI 325 (553)
Q Consensus 280 -----~rVfei~~~FR~E~~~----~---~H~~EFt~lE~e~a~~~~~~~m~~~e~li 325 (553)
-|+|++|+|||+|... + -+..||+|.|.+. |..-++..+..++++
T Consensus 127 ~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~-f~~~e~~~~~~~~~l 183 (297)
T cd00770 127 EEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFV-FTKPEESWEELEELI 183 (297)
T ss_pred HhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEE-EECchHHHHHHHHHH
Confidence 2899999999999762 2 3788999999985 543244444333333
|
SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer. |
| >PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0011 Score=67.89 Aligned_cols=98 Identities=9% Similarity=-0.013 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCeEEEecceeccc----cCCC--CCcceeeccCCCCcceeeeeCHHHHHHHHHHc---c
Q psy11418 208 RHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI----AGGA--TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG---G 278 (553)
Q Consensus 208 ~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~gga--~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~---g 278 (553)
++.+..+..+.+.+++.|.++||.||+||++-.. ..+. ....|..-.+.-|+.+-||.-.....-|+++. +
T Consensus 4 ~~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~~~ 83 (272)
T PRK12294 4 SEQLIALKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHEDLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYPTA 83 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhccccchhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcCCC
Confidence 3455677888899999999999999999999421 1121 11222222233578889998887777776653 3
Q ss_pred CCcEEEEccccccCCCCCCccCCcceeeeEeccC
Q psy11418 279 LDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA 312 (553)
Q Consensus 279 ~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~ 312 (553)
..|.|++|++||++. +|+|+.+|.-+.
T Consensus 84 ~~Rl~Y~g~VfR~~~-------~~~Q~GvEliG~ 110 (272)
T PRK12294 84 ATKVAYAGLIIRNNE-------AAVQVGIENYAP 110 (272)
T ss_pred CceEEEeccEeccCC-------CcceeceEEECC
Confidence 459999999999874 489999998874
|
|
| >cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0022 Score=52.40 Aligned_cols=73 Identities=14% Similarity=0.250 Sum_probs=59.0
Q ss_pred EEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc-CCceeEeeeeEE
Q psy11418 93 LSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-KGELSIIPKKLT 171 (553)
Q Consensus 93 V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~-~ge~~l~~~~i~ 171 (553)
++|.|-|.++|...++++|++|.|.++.+.+++..+.+ ......|..|+.|.|.|.+.... .|++.|.++++.
T Consensus 2 ~~v~g~v~~i~~tk~g~~~~~L~D~~~~i~~~~f~~~~------~~~~~~l~~g~~v~v~g~v~~~~~~~~~~l~v~~i~ 75 (78)
T cd04489 2 VWVEGEISNLKRPSSGHLYFTLKDEDASIRCVMWRSNA------RRLGFPLEEGMEVLVRGKVSFYEPRGGYQLIVEEIE 75 (78)
T ss_pred EEEEEEEecCEECCCcEEEEEEEeCCeEEEEEEEcchh------hhCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEE
Confidence 67899999998633369999999999999999987632 33456799999999999998544 677889888774
|
E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis. |
| >cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00036 Score=58.69 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=46.6
Q ss_pred HhcccccCC-CcccccccccccChHHHHHhhcccCCccEEEEEcccccCCC------CceeEEeeeEEEEec
Q psy11418 325 ISGRKEDRN-RPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK------GELSIIPKKLTLLSP 389 (553)
Q Consensus 325 i~~~~~~~~-~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~------g~~El~~~~i~vl~~ 389 (553)
|-.+-++.+ .+|++.+.. .+.+..++.|+.||+|.|+|.+.+++. |++||.++++++|++
T Consensus 20 Fi~LrD~~g~~iQvv~~~~-----~~~~~~~~~l~~~s~V~V~G~v~~~~~~~~~~~~~~Ei~~~~i~il~~ 86 (86)
T cd04321 20 FADLRDPNGDIIQLVSTAK-----KDAFSLLKSITAESPVQVRGKLQLKEAKSSEKNDEWELVVDDIQTLNA 86 (86)
T ss_pred EEEEECCCCCEEEEEECCC-----HHHHHHHhcCCCCcEEEEEEEEEeCCCcCCCCCCCEEEEEEEEEEecC
Confidence 344556666 488877642 245567788999999999999988764 899999999999984
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for |
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0011 Score=75.31 Aligned_cols=125 Identities=15% Similarity=0.076 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC-
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL- 279 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~- 279 (553)
.-.+++.+|++.+++....+||.||.||.|.... +|- ....|.+. +.-+..+.|+.+.+-..-.+....+
T Consensus 245 ~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~-~~~~~~y~l~p~~~p~~~~~~~~~~~ 323 (614)
T PLN02837 245 KGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQM-DIEDELYQLRPMNCPYHILVYKRKLH 323 (614)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhccccc-CCCCceEEECCCCcHHHHHHHhCccC
Confidence 4568999999999999999999999999996421 110 11333321 1113445677665433222222222
Q ss_pred ------CcEEEEccccccCCCCC----CccCCcceeeeEeccCCHHHHHHHHHHHH---hcccccCCCc
Q psy11418 280 ------DRVYEVGRQFRNEGIDL----THNPEFTTCEFYMAYADYNDLMHLTEDLI---SGRKEDRNRP 335 (553)
Q Consensus 280 ------~rVfei~~~FR~E~~~~----~H~~EFt~lE~e~a~~~~~~~m~~~e~li---~~~~~~~~~i 335 (553)
-|++++|+|||+|.+.. -+.-||+|.|.+. |...++..+..++++ ..+++.++.+
T Consensus 324 SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~-f~~~~q~~~e~~~~l~~~~~~~~~lg~~ 391 (614)
T PLN02837 324 SYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRGVLDLTEEILKQFGFS 391 (614)
T ss_pred ChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEE-EeCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 28999999999998743 3788999999996 887666555555544 3344444444
|
|
| >cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00036 Score=58.40 Aligned_cols=61 Identities=25% Similarity=0.383 Sum_probs=48.7
Q ss_pred hcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC-----CCceeEEeeeEEEEec
Q psy11418 326 SGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-----KGELSIIPKKLTLLSP 389 (553)
Q Consensus 326 ~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~-----~g~~El~~~~i~vl~~ 389 (553)
-.+-++.+.+|++++.... ++++..+++|+.||+|.|+|.+.+++ ++++||.++++++|++
T Consensus 20 i~Lrd~~~~iQ~v~~~~~~---~~~~~~~~~l~~~s~V~v~G~~~~~~~~~~~~~~~El~~~~i~il~~ 85 (85)
T cd04100 20 IDLRDGSGIVQVVVNKEEL---GEFFEEAEKLRTESVVGVTGTVVKRPEGNLATGEIELQAEELEVLSK 85 (85)
T ss_pred EEEEeCCeeEEEEEECCcC---hHHHHHHhCCCCCCEEEEEeEEEECCCCCCCCCCEEEEEeEEEEECC
Confidence 3455677888888765322 22677889999999999999998765 7899999999999975
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A |
| >PLN02678 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0014 Score=71.40 Aligned_cols=116 Identities=18% Similarity=0.216 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc---cCCCCC-----cceeeccCCCCcceeeeeCHHHHHHHHHH-----
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI---AGGATA-----KPFVTHHNDLNMDLYMRIAPELYLKMLVV----- 276 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~---~gga~a-----~~F~t~~~~~~~~~~L~~Spql~lk~l~~----- 276 (553)
-.+++.++++.+++++.++||.||.||.|... .+.+.. ..|... .-+.+.||.-..|..+--+.+
T Consensus 173 ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~--~~~~~~yLi~TaE~~l~~~h~~~~~s 250 (448)
T PLN02678 173 GVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVT--GEGDDKYLIATSEQPLCAYHRGDWID 250 (448)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceec--CCCCceeeecccccccChHHhcccCC
Confidence 35789999999999999999999999999532 111111 223221 012356655433222221111
Q ss_pred -ccC-CcEEEEccccccCCC----CC---CccCCcceeeeEeccCC---------HHHHHHHHHHHHhcc
Q psy11418 277 -GGL-DRVYEVGRQFRNEGI----DL---THNPEFTTCEFYMAYAD---------YNDLMHLTEDLISGR 328 (553)
Q Consensus 277 -~g~-~rVfei~~~FR~E~~----~~---~H~~EFt~lE~e~a~~~---------~~~~m~~~e~li~~~ 328 (553)
..+ =|++++++|||+|.+ ++ .+.-+|++.|... +.. +++|++.+|++++.+
T Consensus 251 ~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~-~~~pe~~~s~~~~e~~l~~~~~i~~~L 319 (448)
T PLN02678 251 PKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFC-ITSPNGNESWEMHEEMLKNSEDFYQSL 319 (448)
T ss_pred HHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEE-EECCCchhHHHHHHHHHHHHHHHHHHc
Confidence 112 289999999999987 34 2666899999954 432 444555555555444
|
|
| >COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.002 Score=70.93 Aligned_cols=115 Identities=21% Similarity=0.239 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CC----CCCcceeeccCCCCcceeeeeCHHHHHHHHHHccC--
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GG----ATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL-- 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gg----a~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~-- 279 (553)
-++++.+|.+.+|+.|++-|..||--|+|++.. .| =+-+.|... +..+.++.||...|--.--++..-+
T Consensus 46 g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~-drg~~~l~L~PTsEe~it~~~~~~i~S 124 (500)
T COG0442 46 GLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVK-DRGDRPLALRPTSEEVITDMFRKWIRS 124 (500)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEEE-ccCCceeeeCCCcHHHHHHHHHHHhhh
Confidence 357889999999999999999999999998632 11 123555543 4458899999666543333322222
Q ss_pred -----CcEEEEccccccCCCCCC---ccCCcceeeeEeccCCHHHHHHHHHHHH
Q psy11418 280 -----DRVYEVGRQFRNEGIDLT---HNPEFTTCEFYMAYADYNDLMHLTEDLI 325 (553)
Q Consensus 280 -----~rVfei~~~FR~E~~~~~---H~~EFt~lE~e~a~~~~~~~m~~~e~li 325 (553)
-++|+|...||.|.--++ +..||+|=|.|...+|.+++....++++
T Consensus 125 YkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~ 178 (500)
T COG0442 125 YKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKML 178 (500)
T ss_pred hhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHH
Confidence 289999999999987663 8899999999999999999988888776
|
|
| >PRK04173 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0016 Score=71.36 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=30.7
Q ss_pred cEEEEccccccCCCCC---CccCCcceeeeEeccCCHHHHHHHHH
Q psy11418 281 RVYEVGRQFRNEGIDL---THNPEFTTCEFYMAYADYNDLMHLTE 322 (553)
Q Consensus 281 rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~~e 322 (553)
|+.++|+|||+|.+.. .+..||||.|.+ .|.+-+++.+.+.
T Consensus 188 r~aq~g~~~RnE~s~~~gL~RvReF~q~e~h-iF~~peq~~~e~~ 231 (456)
T PRK04173 188 GIAQIGKSFRNEITPRNFIFRTREFEQMELE-FFVKPGTDNEWFA 231 (456)
T ss_pred eeeEEchhHhCccCCCCCceeeceeeeeEEE-EEECcChHHHHHH
Confidence 8999999999998763 255899999998 5776444433333
|
|
| >PLN02320 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0055 Score=67.43 Aligned_cols=112 Identities=13% Similarity=0.199 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhhhCCeEEEecceeccc---cCCCCC------cceeeccCCCCcceeeeeCHHH-----HHHHHHH-
Q psy11418 212 IVRAQIIAYVRRYLDSLGFLEVETPMMNMI---AGGATA------KPFVTHHNDLNMDLYMRIAPEL-----YLKMLVV- 276 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~~~gF~EV~TPil~~~---~gga~a------~~F~t~~~~~~~~~~L~~Spql-----~lk~l~~- 276 (553)
++..++++.+++++.++||.||.||.|... .|.+.. ..|.+ -+.++||--..|. |....+.
T Consensus 234 ~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~i----e~ed~~Li~TaE~Pl~~~~~~~ils~ 309 (502)
T PLN02320 234 LLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSI----DGSDQCLIGTAEIPVGGIHMDSILLE 309 (502)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEE----CCCceEEeecccccccccccccccCH
Confidence 466788999999999999999999999522 221111 11211 1456787533332 3222111
Q ss_pred ccC-CcEEEEccccccCCC----CCC---ccCCcceeeeEeccCCHHHHHHHHHHHHhcc
Q psy11418 277 GGL-DRVYEVGRQFRNEGI----DLT---HNPEFTTCEFYMAYADYNDLMHLTEDLISGR 328 (553)
Q Consensus 277 ~g~-~rVfei~~~FR~E~~----~~~---H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~ 328 (553)
..+ -|++++|+|||.|-+ +++ +.-+|++.|... |..-++..+..++|+..+
T Consensus 310 ~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~i-f~~peqs~~e~e~ll~~~ 368 (502)
T PLN02320 310 SALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFV-ICRPEESESFHEELIQIE 368 (502)
T ss_pred hhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEE-EECHHHHHHHHHHHHHHH
Confidence 112 289999999999976 442 666799999987 665566666656555444
|
|
| >cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0018 Score=54.17 Aligned_cols=61 Identities=11% Similarity=0.139 Sum_probs=46.4
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC-----CCceeEEeeeEEEEec
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-----KGELSIIPKKLTLLSP 389 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~-----~g~~El~~~~i~vl~~ 389 (553)
|-.+-++.+.+|++.+.... ++ +..++.|+.||+|.|+|.+.+++ ++++||.++++++|++
T Consensus 19 Fi~LrD~~~~iQ~v~~~~~~---~~-~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~Ei~~~~i~vl~~ 84 (84)
T cd04323 19 FLVLRDGTGFLQCVLSKKLV---TE-FYDAKSLTQESSVEVTGEVKEDPRAKQAPGGYELQVDYLEIIGE 84 (84)
T ss_pred EEEEEcCCeEEEEEEcCCcc---hh-HHHHhcCCCcCEEEEEEEEEECCcccCCCCCEEEEEEEEEEEcC
Confidence 34556677778887764321 22 56778999999999999998764 5679999999999974
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with |
| >cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0096 Score=48.66 Aligned_cols=73 Identities=25% Similarity=0.373 Sum_probs=57.5
Q ss_pred EEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEE
Q psy11418 93 LSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTL 172 (553)
Q Consensus 93 V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~i 172 (553)
|.|.|-|.+.+..| .=.|+.|.|+++.|.|++-+... + .....+..||-|.|.|.+.- +.|.+.+.+.++++
T Consensus 1 v~v~GeVs~~~~~~-GHvyfsLkD~~a~i~cv~f~~~~-----~-~~~~~l~~Gd~V~v~G~v~~-~~G~~ql~v~~i~~ 72 (73)
T cd04487 1 VHIEGEVVQIKQTS-GPTIFTLRDETGTVWAAAFEEAG-----V-RAYPEVEVGDIVRVTGEVEP-RDGQLQIEVESLEV 72 (73)
T ss_pred CEEEEEEeccccCC-CCEEEEEEcCCEEEEEEEEchhc-----c-CCcCCCCCCCEEEEEEEEec-CCeEEEEEEeeEEE
Confidence 46888888764444 44799999999999999876531 1 12346899999999999875 89999999999987
Q ss_pred e
Q psy11418 173 L 173 (553)
Q Consensus 173 l 173 (553)
|
T Consensus 73 ~ 73 (73)
T cd04487 73 L 73 (73)
T ss_pred C
Confidence 5
|
RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function. |
| >TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.002 Score=69.57 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=45.4
Q ss_pred CcEEEEccccccCC-CCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 280 DRVYEVGRQFRNEG-IDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 280 ~rVfei~~~FR~E~-~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
-|+|++|+|||+|. .|++|+++|+|+|.-++.. ++.|++.+++.+++.+
T Consensus 208 iRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 208 LKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred eEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 39999999999995 6999999999999998876 6999999999999998
|
This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys. |
| >cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0026 Score=52.77 Aligned_cols=57 Identities=16% Similarity=0.270 Sum_probs=43.7
Q ss_pred cccccCC--CcccccccccccChHHHHHhhcccCCccEEEEEcccccCCC--CceeEEeeeEEEEe
Q psy11418 327 GRKEDRN--RPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK--GELSIIPKKLTLLS 388 (553)
Q Consensus 327 ~~~~~~~--~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~--g~~El~~~~i~vl~ 388 (553)
.+-++.. .+|++++... .. +..+++|+.||+|.|+|.+.+++. +++||.++++++++
T Consensus 21 ~LrD~s~~~~lQvv~~~~~----~~-~~~~~~l~~gs~V~v~G~v~~~~~~~~~~El~~~~i~il~ 81 (82)
T cd04318 21 ELNDGSCLKNLQVVVDKEL----TN-FKEILKLSTGSSIRVEGVLVKSPGAKQPFELQAEKIEVLG 81 (82)
T ss_pred EEECCCCccCEEEEEeCcc----cC-HHHHhcCCCceEEEEEEEEEeCCCCCCCEEEEEEEEEEec
Confidence 3445554 4888876532 11 456788999999999999988775 89999999999986
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial |
| >TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.025 Score=62.15 Aligned_cols=118 Identities=10% Similarity=0.067 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHh-hhCCeEEEecceeccc---cCCCCC-----cceee-ccC------------------------
Q psy11418 210 KFIVRAQIIAYVRRYL-DSLGFLEVETPMMNMI---AGGATA-----KPFVT-HHN------------------------ 255 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl-~~~gF~EV~TPil~~~---~gga~a-----~~F~t-~~~------------------------ 255 (553)
..++..++.+.+.+.+ .+.||.||-+|.|.+. .+.+.. ..|.+ +..
T Consensus 222 ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~L 301 (520)
T TIGR00415 222 ITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDKL 301 (520)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhccccccccccccccccc
Confidence 4457778888887655 5669999999999642 111111 22322 110
Q ss_pred --C-CCcceeeeeCHHHHHHHHHHccC-------CcEEEEc-cccccCCCCC---CccCCcceeeeEeccCCHHHHHHHH
Q psy11418 256 --D-LNMDLYMRIAPELYLKMLVVGGL-------DRVYEVG-RQFRNEGIDL---THNPEFTTCEFYMAYADYNDLMHLT 321 (553)
Q Consensus 256 --~-~~~~~~L~~Spql~lk~l~~~g~-------~rVfei~-~~FR~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~~ 321 (553)
. -+.+++|+-+.+..+=.+..+-+ -|+|++. +|||.|..++ .+.-||+|.|.-. +++.++..+..
T Consensus 302 ~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~tpEea~e~~ 380 (520)
T TIGR00415 302 KNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAEPEETEEIR 380 (520)
T ss_pred cccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeCHHHHHHHH
Confidence 0 11267799988887765544333 2788844 7999999766 4788999999999 89988888888
Q ss_pred HHHHhcc
Q psy11418 322 EDLISGR 328 (553)
Q Consensus 322 e~li~~~ 328 (553)
++++...
T Consensus 381 e~mle~~ 387 (520)
T TIGR00415 381 DKTLELA 387 (520)
T ss_pred HHHHHHH
Confidence 8888555
|
The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases. |
| >cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE) | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.022 Score=46.25 Aligned_cols=72 Identities=24% Similarity=0.380 Sum_probs=52.6
Q ss_pred EEEEEEeee----cCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeE
Q psy11418 95 VAGRVHAIR----ESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKL 170 (553)
Q Consensus 95 v~Gri~~~R----~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i 170 (553)
+.|.|.+++ +.|+.++++.|.|+++.+.+++-.+ .|......+..|..|.|.|.+... .|..++.+.++
T Consensus 2 i~g~v~~~~~~~~k~g~~~~~~~l~D~tg~~~~~~f~~------~~~~~~~~l~~g~~v~v~G~v~~~-~~~~~l~~~~i 74 (84)
T cd04485 2 VAGLVTSVRRRRTKKGKRMAFVTLEDLTGSIEVVVFPE------TYEKYRDLLKEDALLLVEGKVERR-DGGLRLIAERI 74 (84)
T ss_pred EEEEEEEeEEEEcCCCCEEEEEEEEeCCCeEEEEECHH------HHHHHHHHhcCCCEEEEEEEEEec-CCceEEEeecc
Confidence 456665543 3354589999999999999998753 233345678999999999999764 36788887766
Q ss_pred EEe
Q psy11418 171 TLL 173 (553)
Q Consensus 171 ~il 173 (553)
..+
T Consensus 75 ~~~ 77 (84)
T cd04485 75 EDL 77 (84)
T ss_pred ccH
Confidence 544
|
The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis. |
| >COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0096 Score=63.56 Aligned_cols=126 Identities=15% Similarity=0.134 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceeccc----cC-CC--CCcceeeccCCCCcceeeeeCHHHHHHHHHHcc----C
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMI----AG-GA--TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG----L 279 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~g-ga--~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g----~ 279 (553)
.+....|.+.+++.|..+||..|+||+|.+. .+ |+ ..+.|.+. +..+..+.||.-.....-+..+.. -
T Consensus 17 ~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~-d~~g~~l~LRpD~T~pVaR~~~~~~~~~P 95 (390)
T COG3705 17 ARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLE-DETGGRLGLRPDFTIPVARIHATLLAGTP 95 (390)
T ss_pred HhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEe-cCCCCeEEecccccHHHHHHHHHhcCCCC
Confidence 3566777888899999999999999999742 22 33 25778775 555666999977776666655543 3
Q ss_pred CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCccccc
Q psy11418 280 DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMA 339 (553)
Q Consensus 280 ~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~ 339 (553)
.|+++.|++||+.........||+|.-+|.-+.+ --+++.++-..++.+ ++...++..
T Consensus 96 ~Rl~Y~G~Vfr~~~~~~g~~~Ef~QaGiEllG~~~~~ADaEvi~la~~~L~~~--gl~~~~l~L 157 (390)
T COG3705 96 LRLSYAGKVFRAREGRHGRRAEFLQAGIELLGDDSAAADAEVIALALAALKAL--GLADLKLEL 157 (390)
T ss_pred ceeeecchhhhcchhccCcccchhhhhhHHhCCCcchhhHHHHHHHHHHHHHc--CCcCeEEEe
Confidence 5899999999999333356669999999986553 566777777777776 455555443
|
|
| >cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.044 Score=46.52 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=58.2
Q ss_pred EEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEE
Q psy11418 93 LSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTL 172 (553)
Q Consensus 93 V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~i 172 (553)
|++.|+|.++...+.. .=+.|.|++|.|-+.+........ ......+..|+.|.|.|.+..- .|...|.+..+..
T Consensus 2 v~~vG~V~~~~~~~~~-~~~tL~D~TG~I~~~~W~~~~~~~---~~~~~~~~~g~~v~v~G~v~~~-~g~~ql~i~~i~~ 76 (95)
T cd04478 2 VTLVGVVRNVEEQSTN-ITYTIDDGTGTIEVRQWLDDDNDD---SSEVEPIEEGTYVRVFGNLKSF-QGKKSIMAFSIRP 76 (95)
T ss_pred EEEEEEEEeeeEcccE-EEEEEECCCCcEEEEEeCCCCCcc---cccccccccCCEEEEEEEEccc-CCeeEEEEEEEEE
Confidence 7899999999988844 447899999999999876532100 0124579999999999998643 4778888888776
Q ss_pred ec
Q psy11418 173 LS 174 (553)
Q Consensus 173 l~ 174 (553)
+.
T Consensus 77 v~ 78 (95)
T cd04478 77 VT 78 (95)
T ss_pred eC
Confidence 54
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam |
| >PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.033 Score=48.18 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=61.1
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHh-ccCCCCcEEEEEeecccc-cCCceeEeee
Q psy11418 91 VTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDL-VKIKRGDIIGVTGSPGKT-KKGELSIIPK 168 (553)
Q Consensus 91 ~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~-~~l~~gd~V~v~G~~~~t-~~ge~~l~~~ 168 (553)
..|.|.|-|.+.+.++++-+|++|.|+...++|++-.... .... ..+..|+-|.|.|.+.-- +.|.+++.+.
T Consensus 22 ~~vwV~GEIs~~~~~~~gh~YftLkD~~a~i~~~~~~~~~------~~i~~~~l~~G~~V~v~g~~~~y~~~G~~sl~v~ 95 (99)
T PF13742_consen 22 PNVWVEGEISNLKRHSSGHVYFTLKDEEASISCVIFRSRA------RRIRGFDLKDGDKVLVRGRVSFYEPRGSLSLIVE 95 (99)
T ss_pred CCEEEEEEEeecEECCCceEEEEEEcCCcEEEEEEEHHHH------hhCCCCCCCCCCEEEEEEEEEEECCCcEEEEEEE
Confidence 4599999999999955478999999999999999987532 1222 468999999999998654 5778999998
Q ss_pred eEE
Q psy11418 169 KLT 171 (553)
Q Consensus 169 ~i~ 171 (553)
+++
T Consensus 96 ~i~ 98 (99)
T PF13742_consen 96 DID 98 (99)
T ss_pred EeE
Confidence 874
|
|
| >COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.074 Score=57.48 Aligned_cols=114 Identities=18% Similarity=0.257 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhhhCCeEEEecceecc---ccCCCCCcceeeccCCC---CcceeeeeCHHHHHHHHHHcc------C
Q psy11418 212 IVRAQIIAYVRRYLDSLGFLEVETPMMNM---IAGGATAKPFVTHHNDL---NMDLYMRIAPELYLKMLVVGG------L 279 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~~~gF~EV~TPil~~---~~gga~a~~F~t~~~~~---~~~~~L~~Spql~lk~l~~~g------~ 279 (553)
++--++++.+=++..++||.|+.+|.|.. ..|.+-..-|.- +.| +.++||--..|..+--+..+- +
T Consensus 175 ~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e--~~y~v~~~~~~LipTaEvpl~~l~~~Eil~~~~L 252 (429)
T COG0172 175 RLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEE--DLYKVEDPDLYLIPTAEVPLTNLHRDEILDEEDL 252 (429)
T ss_pred HHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCCCcc--cceEecCCCEEEEecchhhhHHhhcccccccccC
Confidence 45556677777788899999999999963 233332222321 111 236899888777766554321 2
Q ss_pred -CcEEEEccccccCCCC----CC---ccCCcceeeeEeccCC-------HHHHHHHHHHHHhcc
Q psy11418 280 -DRVYEVGRQFRNEGID----LT---HNPEFTTCEFYMAYAD-------YNDLMHLTEDLISGR 328 (553)
Q Consensus 280 -~rVfei~~~FR~E~~~----~~---H~~EFt~lE~e~a~~~-------~~~~m~~~e~li~~~ 328 (553)
-+.+-.+||||.|... ++ +.-+|..+|.-. ++. ++.|...+|++++.+
T Consensus 253 P~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~-~~~Pe~S~~~~E~m~~~ae~il~~L 315 (429)
T COG0172 253 PIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVV-ITKPEESEEELEEMLGNAEEVLQEL 315 (429)
T ss_pred CeeeEEEChhhhcccccccccccceeeeeeeeeEEEEE-EeCcchhHHHHHHHHHHHHHHHHHh
Confidence 2677789999999775 43 566799988765 444 455555555555444
|
|
| >cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.06 Score=41.95 Aligned_cols=70 Identities=21% Similarity=0.331 Sum_probs=53.4
Q ss_pred EEEEEEEeeecCC--CceEEEEEEeCC-EEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeE
Q psy11418 94 SVAGRVHAIRESG--TKLMFYDLRGEG-LKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKL 170 (553)
Q Consensus 94 ~v~Gri~~~R~~g--~kl~Fi~l~d~~-~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i 170 (553)
++.|.|.+++... ++.+++.|.|++ +.+.+++..+.. ......+..|+.|.|.|.+... .+...+.+.++
T Consensus 1 ~v~g~v~~~~~~~~~~~~~~~~l~D~~~~~i~~~~~~~~~------~~~~~~~~~g~~v~v~g~v~~~-~~~~~l~~~~~ 73 (75)
T cd03524 1 TIVGIVVAVEEIRTEGKVLIFTLTDGTGGTIRVTLFGELA------EELENLLKEGQVVYIKGKVKKF-RGRLQLIVESI 73 (75)
T ss_pred CeEEEEEeecccccCCeEEEEEEEcCCCCEEEEEEEchHH------HHHHhhccCCCEEEEEEEEEec-CCeEEEEeeee
Confidence 3678888887654 478999999999 999999987532 2234569999999999999753 56677776644
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco |
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0053 Score=68.88 Aligned_cols=111 Identities=21% Similarity=0.298 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHH-----HHHHHHHHcc
Q psy11418 212 IVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPE-----LYLKMLVVGG 278 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spq-----l~lk~l~~~g 278 (553)
.+|+.+.+.+|.-..+.||.||.||.|.... .|- ....|.+. .-+..+.|+...- .|+..+-..-
T Consensus 221 ~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~--~~~~~~~lKpmNCpgh~~ifk~~~~SYR 298 (589)
T COG0441 221 TIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTE--SDDREYALKPMNCPGHILIFKSGLRSYR 298 (589)
T ss_pred cHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhccccceeec--cCChhheeeeccCHhHHHHHhcCCccee
Confidence 5788899999999999999999999995321 111 01222221 1123444553322 2222111000
Q ss_pred -C-CcEEEEccccccCCCCC----CccCCcceeeeEeccCCHHHHHHHHHHHH
Q psy11418 279 -L-DRVYEVGRQFRNEGIDL----THNPEFTTCEFYMAYADYNDLMHLTEDLI 325 (553)
Q Consensus 279 -~-~rVfei~~~FR~E~~~~----~H~~EFt~lE~e~a~~~~~~~m~~~e~li 325 (553)
+ -|++|+|.|||+|.+.. +..-+|||=|.-. |...+.+.+-+.+.+
T Consensus 299 ~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHi-fc~~dQi~~E~~~~~ 350 (589)
T COG0441 299 ELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHI-FCTPDQIKDEFKGIL 350 (589)
T ss_pred ccchhhhhcceeecccCcchhhccccccceeecccce-eccHHHHHHHHHHHH
Confidence 1 28999999999999986 5789999999877 555555555444433
|
|
| >cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1) | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.13 Score=41.86 Aligned_cols=64 Identities=22% Similarity=0.322 Sum_probs=49.7
Q ss_pred cCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEecc
Q psy11418 104 ESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSP 175 (553)
Q Consensus 104 ~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~ 175 (553)
+.|+.++++.|.|++|.+.+++-.+.. .....+..|..|.|.|.+.. ..|..++.+.++..+..
T Consensus 15 k~g~~~~~~~l~D~tg~i~~~~f~~~~-------~~~~~l~~g~~v~v~G~v~~-~~~~~~l~~~~i~~l~~ 78 (83)
T cd04492 15 KNGKPYLALTLQDKTGEIEAKLWDASE-------EDEEKFKPGDIVHVKGRVEE-YRGRLQLKIQRIRLVTE 78 (83)
T ss_pred cCCCcEEEEEEEcCCCeEEEEEcCCCh-------hhHhhCCCCCEEEEEEEEEE-eCCceeEEEEEEEECCc
Confidence 446578999999999999999976431 12457999999999999965 46678888888876653
|
Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases. |
| >PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.05 Score=61.31 Aligned_cols=111 Identities=13% Similarity=0.112 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhhhCCeEEEecceeccccC------CCCC-cceeeccCCC-CcceeeeeCH--HHHHHHHHHccC-----
Q psy11418 215 AQIIAYVRRYLDSLGFLEVETPMMNMIAG------GATA-KPFVTHHNDL-NMDLYMRIAP--ELYLKMLVVGGL----- 279 (553)
Q Consensus 215 s~i~~~ir~fl~~~gF~EV~TPil~~~~g------ga~a-~~F~t~~~~~-~~~~~L~~Sp--ql~lk~l~~~g~----- 279 (553)
..+.+.+|++|...||.|+-|..+.+... -... .+... .|-. ..--+||.|. .|..- +....
T Consensus 362 ~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~i~l-~NPls~e~svLRtsLlpgLL~~--~~~N~~~~~~ 438 (552)
T PRK09616 362 EKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEEDYVEV-LNPISEDYTVVRTSLLPSLLEF--LSNNKHREYP 438 (552)
T ss_pred HHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCCCCeEEE-cCCCccchheEeccchHHHHHH--HHhccCCCCC
Confidence 34567789999999999999999964311 0111 12222 2322 2335688774 43322 22221
Q ss_pred CcEEEEccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 280 DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 280 ~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
-|+||||+||+.+..+..|..|++++.+-++.. |+.|+...+|.++..+
T Consensus 439 ~~lFEiG~Vf~~~~~~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~l 489 (552)
T PRK09616 439 QKIFEIGDVVLIDESTETGTRTERKLAAAIAHSEASFTEIKSVVQALLREL 489 (552)
T ss_pred eeEEEeeEEEecCCccccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 289999999998765556878999999888874 8999999999999766
|
|
| >cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.052 Score=46.27 Aligned_cols=74 Identities=22% Similarity=0.278 Sum_probs=56.0
Q ss_pred EEEEEEEeeecC--CCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEE
Q psy11418 94 SVAGRVHAIRES--GTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLT 171 (553)
Q Consensus 94 ~v~Gri~~~R~~--g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~ 171 (553)
+|.|.|.+++.+ | .=+|+.|.|+++.|.+++-+..- .+......|..||-|.|.|.+..-. .|.++.++
T Consensus 2 ~v~GeVs~~~~~~~s-GH~yFtlkD~~~~i~cv~f~~~g----~~~~~~~~l~~Gd~V~v~G~v~~y~----ql~ve~l~ 72 (91)
T cd04482 2 RVTGKVVEEPRTIEG-GHVFFKISDGTGEIDCAAYEPTK----EFRDVVRLLIPGDEVTVYGSVRPGT----TLNLEKLR 72 (91)
T ss_pred EEEEEEeCCeecCCC-CCEEEEEECCCcEEEEEEECccc----ccccccCCCCCCCEEEEEEEEecCC----EEEEEEEE
Confidence 689999988653 4 45789999999999998876431 1223456799999999999987544 68889988
Q ss_pred EeccC
Q psy11418 172 LLSPC 176 (553)
Q Consensus 172 il~~~ 176 (553)
+++-.
T Consensus 73 ~~glg 77 (91)
T cd04482 73 VIRLA 77 (91)
T ss_pred ECCCc
Confidence 87654
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende |
| >PRK00960 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.025 Score=62.66 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHH-hhhCCeEEEecceecccc---CCCC-----Ccceeecc-----CCC------------------
Q psy11418 210 KFIVRAQIIAYVRRY-LDSLGFLEVETPMMNMIA---GGAT-----AKPFVTHH-----NDL------------------ 257 (553)
Q Consensus 210 ~~~~rs~i~~~ir~f-l~~~gF~EV~TPil~~~~---gga~-----a~~F~t~~-----~~~------------------ 257 (553)
-.++..++.+.+++. +.+.||.||-||.|.+.. +.+. ...|.+.. +.+
T Consensus 222 Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~~ 301 (517)
T PRK00960 222 MTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEKL 301 (517)
T ss_pred HHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhcccccccccccc
Confidence 456778888889877 466699999999995321 1111 12232211 000
Q ss_pred -----CcceeeeeCHHHHHHHHHHccC----C---cEEE-EccccccCCCCC---CccCCcceeeeEeccCCHHHHHHHH
Q psy11418 258 -----NMDLYMRIAPELYLKMLVVGGL----D---RVYE-VGRQFRNEGIDL---THNPEFTTCEFYMAYADYNDLMHLT 321 (553)
Q Consensus 258 -----~~~~~L~~Spql~lk~l~~~g~----~---rVfe-i~~~FR~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~~ 321 (553)
+..+.|+.+..-+.-.+..+.. + |+|+ .|+|||+|...+ .+.-||+|.|.. .+++.+++.+..
T Consensus 302 ~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~tpEqs~ee~ 380 (517)
T PRK00960 302 KEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGTPEQVEEIR 380 (517)
T ss_pred ccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeCHHHHHHHH
Confidence 1122344443333222222221 1 7899 569999996444 478899999999 788888888888
Q ss_pred HHHHhcc
Q psy11418 322 EDLISGR 328 (553)
Q Consensus 322 e~li~~~ 328 (553)
++++.+.
T Consensus 381 e~ll~~~ 387 (517)
T PRK00960 381 DELLKYA 387 (517)
T ss_pred HHHHHHH
Confidence 8887544
|
|
| >PRK07373 DNA polymerase III subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.067 Score=58.62 Aligned_cols=78 Identities=9% Similarity=0.175 Sum_probs=62.5
Q ss_pred CCcEEEEEEEEEeeecC----CCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCcee
Q psy11418 89 ENVTLSVAGRVHAIRES----GTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~----g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
.++.|+|+|.|.++|.. |+.++|+.|.|.+|.+.+++-.+. |......|..|.+|.|+|++.. ..+++.
T Consensus 279 ~~~~v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~ie~vvFp~~------y~~~~~~l~~~~~v~v~G~v~~-~~~~~~ 351 (449)
T PRK07373 279 EKTKVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQSEAVVFPKS------YERISELLQVDARLIIWGKVDR-RDDQVQ 351 (449)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHHH------HHHHHHHhccCCEEEEEEEEEe-cCCeEE
Confidence 46789999999999844 556999999999999999998653 4455667999999999999975 346677
Q ss_pred EeeeeEEEe
Q psy11418 165 IIPKKLTLL 173 (553)
Q Consensus 165 l~~~~i~il 173 (553)
+.+.++.-+
T Consensus 352 liv~~i~~l 360 (449)
T PRK07373 352 LIVEDAEPI 360 (449)
T ss_pred EEEeEeecH
Confidence 887777543
|
|
| >KOG2324|consensus | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.04 Score=57.45 Aligned_cols=130 Identities=18% Similarity=0.238 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceecccc-----C---CCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCC--
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-----G---GATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLD-- 280 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~-----g---ga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~-- 280 (553)
+|.-.++++.++.-|++-|=.+|.-|+|++.+ | +-+.+.|.. ++.-|+.+.|...-|=-.-.+|+.-..
T Consensus 52 ~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl-~Dr~gkq~cL~pThEE~iT~lmat~~~ls 130 (457)
T KOG2324|consen 52 LRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRL-HDRKGKQMCLTPTHEEDITALMATYIPLS 130 (457)
T ss_pred HHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEe-eccCCCEeccCCchHHHHHHHHHhcCccc
Confidence 35667888999999999999999999997532 1 123455654 477888999987766666666654443
Q ss_pred ------cEEEEccccccCCCCC---CccCCcceeeeEeccCCHHHHHHHH---HHHHhcccccCCCccccccc
Q psy11418 281 ------RVYEVGRQFRNEGIDL---THNPEFTTCEFYMAYADYNDLMHLT---EDLISGRKEDRNRPCVMANA 341 (553)
Q Consensus 281 ------rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~~---e~li~~~~~~~~~iqv~~n~ 341 (553)
+||+||+-||+|---. -+-.||.|=|+|.--.|-++.|..- .+.-..+++.++.+.|..++
T Consensus 131 ykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA~qTy~~v~~aY~~iFkqL~~pfVkv~A 203 (457)
T KOG2324|consen 131 YKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETAQQTYQLVDQAYDRIFKQLGLPFVKVWA 203 (457)
T ss_pred cccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEee
Confidence 8999999999996543 3667999999998555655555432 22334566677888777766
|
|
| >TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.056 Score=58.76 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=39.5
Q ss_pred CCCcceeeeeCHHHHHHHHHHccCC-------cEEEEccccccCCCCCCccCCcceeeeEecc
Q psy11418 256 DLNMDLYMRIAPELYLKMLVVGGLD-------RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAY 311 (553)
Q Consensus 256 ~~~~~~~L~~Spql~lk~l~~~g~~-------rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~ 311 (553)
|++.+.-||.-.--+.-++|-.+.. ++...|.|||.+.+|++|.|-|.|+|.-..+
T Consensus 103 Yi~~~~lLRTHTSa~q~~~~~~~~~~~~~~~~~~i~~G~VYRrD~iDatH~p~FHQ~EG~~v~ 165 (460)
T TIGR00469 103 YINEQHLLRAHTSAHELECFQGGLDDSDNIKSGFLISADVYRRDEIDKTHYPVFHQADGAAIR 165 (460)
T ss_pred EecCCceeCCCCcHHHHHHHHhccccCCCcceeeEeecceeeCCCCccccCccceeeEEEEEe
Confidence 4566777884333333334444443 3888999999999999999999999954443
|
Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species. |
| >TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.035 Score=61.96 Aligned_cols=28 Identities=21% Similarity=0.548 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHh-hhCCeEEEecceec
Q psy11418 212 IVRAQIIAYVRRYL-DSLGFLEVETPMMN 239 (553)
Q Consensus 212 ~~rs~i~~~ir~fl-~~~gF~EV~TPil~ 239 (553)
.++..|.+..|++| ...|++||+||+|+
T Consensus 38 ~lk~ni~~~wr~~~v~~~~~~ei~~~~i~ 66 (551)
T TIGR00389 38 VLKNNIKNAWRKFFIKNERVLEIDTPIIT 66 (551)
T ss_pred HHHHHHHHHHHHHHHhcCCceEeeccccC
Confidence 57888999999988 57789999999995
|
This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases. |
| >cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1) | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.14 Score=43.74 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=52.2
Q ss_pred EEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCH--------------HHHHHHhccCCCCcEEEEEeecccccC
Q psy11418 95 VAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSE--------------EEFASDLVKIKRGDIIGVTGSPGKTKK 160 (553)
Q Consensus 95 v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~--------------~~~~~~~~~l~~gd~V~v~G~~~~t~~ 160 (553)
|.|+|.+++... .-.-+.|.|++|.|-+++-......+ .........+..|++|.|.|.+.. =.
T Consensus 2 ivG~V~sv~~~~-~~~~~tLdDgTG~Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~vvrV~G~i~~-fr 79 (92)
T cd04483 2 ILGTVVSRRERE-TFYSFGVDDGTGVVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEIGDLLRVRGSIRT-YR 79 (92)
T ss_pred eEEEEEEEEecC-CeEEEEEecCCceEEEEEEcCcCcccccccccccccccccccccccccccCCCCEEEEEEEEec-cC
Confidence 689999999887 45567899999999999876532100 000023456999999999999864 34
Q ss_pred CceeEeeeeEE
Q psy11418 161 GELSIIPKKLT 171 (553)
Q Consensus 161 ge~~l~~~~i~ 171 (553)
|...|.++.+.
T Consensus 80 g~~ql~i~~~~ 90 (92)
T cd04483 80 GEREINASVVY 90 (92)
T ss_pred CeeEEEEEEEE
Confidence 55666666553
|
Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization. |
| >cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.22 Score=41.26 Aligned_cols=70 Identities=24% Similarity=0.404 Sum_probs=50.7
Q ss_pred EEEEEEEEeeecCC-CceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeE
Q psy11418 93 LSVAGRVHAIRESG-TKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKL 170 (553)
Q Consensus 93 V~v~Gri~~~R~~g-~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i 170 (553)
|.++|-|.++|... ++- |+.|.|.+|.+.+++..+.+ +.| .....|..|.+|.|+|.+.. .++ .+.+.++
T Consensus 2 v~i~GiI~~v~~TK~g~~-~~~leD~~G~~Ev~~F~~~~---~~~-~~~~~l~~d~~v~v~g~v~~--~~~-~l~~~~I 72 (79)
T cd04490 2 VSIIGMVNDVRSTKNGHR-IVELEDTTGRITVLLTKDKE---ELF-EEAEDILPDEVIGVSGTVSK--DGG-LIFADEI 72 (79)
T ss_pred EEEEEEEeEEEEcCCCCE-EEEEECCCCEEEEEEeCchh---hhh-hhhhhccCCCEEEEEEEEec--CCC-EEEEEEe
Confidence 67899999987222 145 99999999999999987653 200 34567899999999999954 244 5555543
|
PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain. |
| >PRK06826 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.17 Score=61.37 Aligned_cols=81 Identities=11% Similarity=0.202 Sum_probs=64.5
Q ss_pred CCcEEEEEEEEEeeecC----CCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCcee
Q psy11418 89 ENVTLSVAGRVHAIRES----GTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~----g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
.+..|+|+|.|.++|.. |+.++|+.|.|.+|.+.+++..+ .|......|..|.+|.|+|++.....+.+.
T Consensus 990 ~~~~v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~~e~~vfp~------~~~~~~~~l~~~~~~~v~g~v~~~~~~~~~ 1063 (1151)
T PRK06826 990 DGDKVIIGGIITEVKRKTTRNNEMMAFLTLEDLYGTVEVIVFPK------VYEKYRSLLNEDNIVLIKGRVSLREDEEPK 1063 (1151)
T ss_pred CCcEEEEEEEEEEeEeeccCCCCeEEEEEEEECCCcEEEEECHH------HHHHHHHHhccCCEEEEEEEEEecCCCceE
Confidence 46789999999998843 44599999999999999999865 344556679999999999999754456688
Q ss_pred EeeeeEEEecc
Q psy11418 165 IIPKKLTLLSP 175 (553)
Q Consensus 165 l~~~~i~il~~ 175 (553)
+.+.++.-+..
T Consensus 1064 ~~~~~~~~l~~ 1074 (1151)
T PRK06826 1064 LICEEIEPLVI 1074 (1151)
T ss_pred EEEeeeecHhh
Confidence 88888765543
|
|
| >PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.11 Score=52.67 Aligned_cols=76 Identities=14% Similarity=0.250 Sum_probs=55.7
Q ss_pred cEEEEEEEEEeeecC----CCceEEEEEEeCCE--EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCcee
Q psy11418 91 VTLSVAGRVHAIRES----GTKLMFYDLRGEGL--KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 91 ~~V~v~Gri~~~R~~----g~kl~Fi~l~d~~~--~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
..|+|.|.|.++.-. . +-+|+.|-|++| .|.|++....... +......+ .|++|.|+|.+. .+..+
T Consensus 67 ~~v~i~G~Vv~~~~~~~~~~-~~~~l~iDD~Sg~~~i~~~~~~~~~~~---~~l~~~~~-~G~~V~VkG~vs---r~~~q 138 (256)
T PF10451_consen 67 RWVRIVGVVVGIDYKWIENE-DRIILTIDDSSGANTIECKCSKSSYLS---MGLPINDL-IGKVVEVKGTVS---RNERQ 138 (256)
T ss_dssp -EEEEEEEEEEEEEEE-BBT-CEEEEEEE-SSCS-EEEEEEEHHHHHC---CCHHCTT--TT-EEEEEEEEE---SSSEE
T ss_pred EEEEEEEEEEEEEEEeeccc-ceEEEEEeCCCCceeEEEEEEcccccc---cCCCccCC-CCcEEEEEEEEc---cCcEE
Confidence 469999999999855 5 678999999999 8999998753210 00123445 999999999998 77888
Q ss_pred EeeeeEEEec
Q psy11418 165 IIPKKLTLLS 174 (553)
Q Consensus 165 l~~~~i~il~ 174 (553)
|.++.+.++.
T Consensus 139 l~ve~i~~~~ 148 (256)
T PF10451_consen 139 LDVERIELVR 148 (256)
T ss_dssp EEEEEEEEET
T ss_pred EEEEEEEccC
Confidence 9999888764
|
Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A. |
| >PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.037 Score=59.73 Aligned_cols=80 Identities=16% Similarity=0.345 Sum_probs=56.1
Q ss_pred CChhhhccccceeeecChHHHHHHHH-----HHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcce---eeeeecCCCC
Q psy11418 402 KDKETRFRQRYLDLMINERIRHKFIV-----RAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATA---KPFVTHHNDL 471 (553)
Q Consensus 402 ~~~e~~~~~R~L~lR~~~~~~~~l~~-----Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~---~~~~t~~~~~ 471 (553)
.+.|.++.+| | ++..++++.. .+.+.++||++|...||.||.||+|+... +..+. .++....-..
T Consensus 180 ~~~e~~l~~r----r-~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~i 254 (417)
T PRK09537 180 KELESELVSR----R-KNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRV 254 (417)
T ss_pred hhHHHHHHHh----c-chhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheee
Confidence 3557777777 6 9999999999 99999999999999999999999997542 11110 0010000013
Q ss_pred CcceeEE--eChhHHHH
Q psy11418 472 NMDLYMR--IAPELYLK 486 (553)
Q Consensus 472 ~~~~yL~--~Spel~~k 486 (553)
+...+|+ ..|.++..
T Consensus 255 deel~LRpsLtPsLlr~ 271 (417)
T PRK09537 255 DKNFCLRPMLAPGLYNY 271 (417)
T ss_pred CCceEehhhhHHHHHHH
Confidence 4568888 45887653
|
|
| >PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.062 Score=42.92 Aligned_cols=54 Identities=30% Similarity=0.406 Sum_probs=43.7
Q ss_pred ccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEE
Q psy11418 328 RKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLL 387 (553)
Q Consensus 328 ~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl 387 (553)
+-++.+.+++++.. +.+....+.|..|+.|.|+|.+...+.++++|.++++++|
T Consensus 22 l~D~tg~i~~~~~~------~~~~~~~~~l~~g~~v~v~G~v~~~~~~~~~l~~~~i~~l 75 (75)
T PF01336_consen 22 LEDGTGSIQVVFFN------EEYERFREKLKEGDIVRVRGKVKRYNGGELELIVPKIEIL 75 (75)
T ss_dssp EEETTEEEEEEEET------HHHHHHHHTS-TTSEEEEEEEEEEETTSSEEEEEEEEEEE
T ss_pred EEECCccEEEEEcc------HHhhHHhhcCCCCeEEEEEEEEEEECCccEEEEECEEEEC
Confidence 44566667777664 5677888999999999999999988777899999999876
|
The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A .... |
| >PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif) | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.37 Score=42.12 Aligned_cols=70 Identities=14% Similarity=0.257 Sum_probs=48.9
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeee
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPK 168 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~ 168 (553)
.+..|++.|.|.+.-..- + +.++|++|.|+|-++.+... -..+++++-|.|.|.+.+.- +..+|.|.
T Consensus 33 Dd~~V~L~G~Iv~~l~~d-~---Y~F~D~TG~I~VeId~~~w~--------g~~vt~~~~Vri~GeVDk~~-~~~~IdV~ 99 (103)
T PF04076_consen 33 DDTPVTLEGNIVKQLGDD-K---YLFRDATGEIEVEIDDDVWR--------GQTVTPDDKVRISGEVDKDW-NKTEIDVD 99 (103)
T ss_dssp SSEEEEEEEEEEEEEETT-E---EEEEETTEEEEEE--GGGST--------T----TTSEEEEEEEEEEET-TEEEEEEE
T ss_pred CCCeEEEEEEEEEEecCC-E---EEEECCCCcEEEEEChhhcC--------CcccCCCCEEEEEEEEeCCC-CceEEEEE
Confidence 567899999987765443 4 45699999999999876442 23589999999999998554 35788887
Q ss_pred eEE
Q psy11418 169 KLT 171 (553)
Q Consensus 169 ~i~ 171 (553)
.|+
T Consensus 100 ~I~ 102 (103)
T PF04076_consen 100 RIE 102 (103)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A. |
| >PRK05672 dnaE2 error-prone DNA polymerase; Validated | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.19 Score=60.50 Aligned_cols=81 Identities=19% Similarity=0.269 Sum_probs=65.4
Q ss_pred CCcEEEEEEEEEeeecC--CCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEe
Q psy11418 89 ENVTLSVAGRVHAIRES--GTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSII 166 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~--g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~ 166 (553)
.+..|+|+|.|..++.. +++++|+.|.|.+|.+.+++..+. |......|..|.++.|+|++.+. .|++.+.
T Consensus 952 ~~~~v~v~g~i~~~~~~~TkkGmaf~~leD~~g~~e~~ifp~~------~~~~~~~l~~~~~~~v~g~v~~~-~~~~~~~ 1024 (1046)
T PRK05672 952 DGRRVRVAGVVTHRQRPGTASGVTFLTLEDETGMVNVVVWPGL------WERQRREALGARLLLVRGRVQNA-EGVRHLV 1024 (1046)
T ss_pred CCCEEEEEEEEEEEEEecCCCceEEEEEecCCCCEEEEECHHH------HHHHHHHhccCCEEEEEEEEEec-CCeEEEE
Confidence 46679999999998865 235999999999999999998753 44555679999999999999764 6678898
Q ss_pred eeeEEEeccC
Q psy11418 167 PKKLTLLSPC 176 (553)
Q Consensus 167 ~~~i~il~~~ 176 (553)
+.++.-+...
T Consensus 1025 ~~~i~~~~~~ 1034 (1046)
T PRK05672 1025 ADRLEDLSPL 1034 (1046)
T ss_pred EeeeechHHH
Confidence 9888766553
|
|
| >PRK07374 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.22 Score=60.58 Aligned_cols=78 Identities=6% Similarity=0.132 Sum_probs=62.6
Q ss_pred CCcEEEEEEEEEeeecC----CCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCcee
Q psy11418 89 ENVTLSVAGRVHAIRES----GTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~----g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
.+.+|+|+|.|.++|.. |+.++|+.|.|.+|.+.+++..+ .|......|..|.+|.|+|++.+ ..++..
T Consensus 999 ~~~~v~v~g~i~~~k~~~Tk~G~~maf~~leD~tg~~e~vvFp~------~y~~~~~~l~~~~~~~v~g~v~~-~~~~~~ 1071 (1170)
T PRK07374 999 DKAKVSAIAMIPEMKQVTTRKGDRMAILQLEDLTGSCEAVVFPK------SYERLSDHLMTDTRLLVWAKVDR-RDDRVQ 1071 (1170)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHH------HHHHHHHHhccCCEEEEEEEEEe-cCCeEE
Confidence 46789999999999743 44699999999999999999865 34455667999999999999975 346678
Q ss_pred EeeeeEEEe
Q psy11418 165 IIPKKLTLL 173 (553)
Q Consensus 165 l~~~~i~il 173 (553)
+.+.++.-+
T Consensus 1072 ~~~~~i~~l 1080 (1170)
T PRK07374 1072 LIIDDCREI 1080 (1170)
T ss_pred EEEeeeecH
Confidence 888777544
|
|
| >COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.12 Score=56.61 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.6
Q ss_pred cEEEEccccccCCCCC---CccCCcceeeeEec
Q psy11418 281 RVYEVGRQFRNEGIDL---THNPEFTTCEFYMA 310 (553)
Q Consensus 281 rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a 310 (553)
-|-+||++||||=+-. -++.||+|+|+|.-
T Consensus 189 giaQIGKsfRNEISPr~gl~R~REF~QaEiE~F 221 (558)
T COG0423 189 GIAQIGKSFRNEISPRNGLFRTREFEQAEIEFF 221 (558)
T ss_pred EEEeechhhccccCcccceeehhhhhhhheeeE
Confidence 5899999999996644 38999999999973
|
|
| >PRK06920 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.21 Score=60.44 Aligned_cols=79 Identities=15% Similarity=0.215 Sum_probs=63.4
Q ss_pred CCcEEEEEEEEEeeec----CCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCcee
Q psy11418 89 ENVTLSVAGRVHAIRE----SGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~----~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
.+..|+|+|.|..+|. .|+.++|+.|.|.+|.+.+++..+ .|......|..|.+|.|+|++.. ..++..
T Consensus 942 ~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~~e~~vFp~------~y~~~~~~l~~~~~~~v~G~v~~-~~~~~~ 1014 (1107)
T PRK06920 942 KKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDEMEAVVFPE------TYIHFSDKLQEGAIVLVDGTIEL-RNHKLQ 1014 (1107)
T ss_pred CCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCcEEEEECHH------HHHHHHHHhccCCEEEEEEEEEe-cCCcEE
Confidence 3568999999999863 355799999999999999999865 34455667999999999999975 356678
Q ss_pred EeeeeEEEec
Q psy11418 165 IIPKKLTLLS 174 (553)
Q Consensus 165 l~~~~i~il~ 174 (553)
+.+.++.-+.
T Consensus 1015 ~~~~~i~~l~ 1024 (1107)
T PRK06920 1015 WIVNGLYPLE 1024 (1107)
T ss_pred EEEeecccHH
Confidence 8888876554
|
|
| >PRK05673 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.23 Score=60.34 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=64.7
Q ss_pred CCcEEEEEEEEEeeecC----CCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCcee
Q psy11418 89 ENVTLSVAGRVHAIRES----GTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~----g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
.+..|.++|.|.++|.. |+.++|+.|.|.+|.+.+++..+ .|......|..|++|.|+|++.. ..+++.
T Consensus 976 ~g~~V~v~G~I~~vk~~~TKkG~~mafltLeD~TG~iEvviFp~------~ye~~~~~L~~g~iV~V~GkVe~-~~~~~q 1048 (1135)
T PRK05673 976 GGSVVTVAGLVVSVRRRVTKRGNKMAIVTLEDLSGRIEVMLFSE------ALEKYRDLLEEDRIVVVKGQVSF-DDGGLR 1048 (1135)
T ss_pred cCceEEEEEEEEEEEecccCCCCeEEEEEEEeCCCcEEEEECHH------HHHHHHHHhccCCEEEEEEEEEe-cCCeEE
Confidence 36789999999999843 55699999999999999999864 34455667999999999999965 346788
Q ss_pred EeeeeEEEeccC
Q psy11418 165 IIPKKLTLLSPC 176 (553)
Q Consensus 165 l~~~~i~il~~~ 176 (553)
|.++++.-+...
T Consensus 1049 lii~~I~~L~~~ 1060 (1135)
T PRK05673 1049 LTAREVMDLEEA 1060 (1135)
T ss_pred EEEeecccHHHH
Confidence 888887666443
|
|
| >cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.36 Score=46.85 Aligned_cols=109 Identities=23% Similarity=0.264 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhhCCeEEEecceeccc-cC----CCCCcceeeccCCC-CcceeeeeC--HHHHHHHH--HHccC--CcEE
Q psy11418 216 QIIAYVRRYLDSLGFLEVETPMMNMI-AG----GATAKPFVTHHNDL-NMDLYMRIA--PELYLKML--VVGGL--DRVY 283 (553)
Q Consensus 216 ~i~~~ir~fl~~~gF~EV~TPil~~~-~g----ga~a~~F~t~~~~~-~~~~~L~~S--pql~lk~l--~~~g~--~rVf 283 (553)
.+.+.+|++|...||.||-|..+.+. .- .....+... .|-. ..--+||.| |.|..-.. ...+. -|+|
T Consensus 4 ~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~~~~~~~~~i~l-~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~lF 82 (198)
T cd00769 4 KLERKLRRLLAGLGFQEVITYSLTSPEEAELFDGGLDEAVEL-SNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLRLF 82 (198)
T ss_pred HHHHHHHHHHHHCCCceeecccCCCHHHHHhccCCCCCeEEE-cCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCEeEE
Confidence 44567899999999999999999643 10 000111211 1111 112235544 23222111 11121 2999
Q ss_pred EEccccccCCCCCCccCCcceeeeEecc-------------CCHHHHHHHHHHHHhcc
Q psy11418 284 EVGRQFRNEGIDLTHNPEFTTCEFYMAY-------------ADYNDLMHLTEDLISGR 328 (553)
Q Consensus 284 ei~~~FR~E~~~~~H~~EFt~lE~e~a~-------------~~~~~~m~~~e~li~~~ 328 (553)
|||+||..+.. +..|.+.+-+-.+. .|+.|+-..+|.++..+
T Consensus 83 EiG~vf~~~~~---~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l 137 (198)
T cd00769 83 EIGRVFLKDED---GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRAL 137 (198)
T ss_pred EeEeEEecCCC---CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHc
Confidence 99999976531 32455555444443 37888999999988766
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain. |
| >PRK07279 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.45 Score=57.09 Aligned_cols=75 Identities=16% Similarity=0.336 Sum_probs=59.9
Q ss_pred CcEEEEEEEEEeee----c-CCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCcee
Q psy11418 90 NVTLSVAGRVHAIR----E-SGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 90 ~~~V~v~Gri~~~R----~-~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
+..+.+.|+|.++| + .|+.++|+.|.|.+|.+.+++..+ .|......|..|.+|.|+|++... .++..
T Consensus 884 ~~~~~~~~~i~~~~~~~tk~~g~~maf~~leD~~g~ie~~vFp~------~y~~~~~~l~~~~~~~v~G~v~~~-~~~~~ 956 (1034)
T PRK07279 884 NSEATILVQIQSIRVIRTKTKGQQMAFLSVTDTKKKLDVTLFPE------TYRQYKDELKEGKFYYLKGKIQER-DGRLQ 956 (1034)
T ss_pred CCcceEEEEEEEEEEEEEcCCCCeEEEEEEeeCCCcEEEEECHH------HHHHHHHHhccCCEEEEEEEEEec-CCeeE
Confidence 45688999998766 2 466799999999999999999865 344556679999999999999753 56777
Q ss_pred EeeeeEE
Q psy11418 165 IIPKKLT 171 (553)
Q Consensus 165 l~~~~i~ 171 (553)
+.+.++.
T Consensus 957 l~~~~i~ 963 (1034)
T PRK07279 957 MVLQQIQ 963 (1034)
T ss_pred EEEeeee
Confidence 8777775
|
|
| >PRK14894 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.51 Score=52.07 Aligned_cols=99 Identities=19% Similarity=0.190 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhh--hCCeEEEecceecc-----------------------------------cc-CCC----CCcc
Q psy11418 212 IVRAQIIAYVRRYLD--SLGFLEVETPMMNM-----------------------------------IA-GGA----TAKP 249 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~--~~gF~EV~TPil~~-----------------------------------~~-gga----~a~~ 249 (553)
.++..|++..|++|- ..+.+|++||||.+ || +|+ ..+|
T Consensus 41 ~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~aSGH~~~F~DpmV~CkkCk~ryRaD~LiikCP~CGs~dLTe~~~ 120 (539)
T PRK14894 41 ELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKYSGHEETFNDPLVDCRDCKMRWRADHIQGVCPNCGSRDLTEPRP 120 (539)
T ss_pred HHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHeeeccCCCCCCCceeECCCCCccccCccceeeCCCCCCcCCCccee
Confidence 467788888888883 56788999999731 11 111 0112
Q ss_pred ----eeeccCCC---CcceeeeeC----HHHHHHHHHHccCC----cEEEEccccccCCCCC---CccCCcceeeeEec
Q psy11418 250 ----FVTHHNDL---NMDLYMRIA----PELYLKMLVVGGLD----RVYEVGRQFRNEGIDL---THNPEFTTCEFYMA 310 (553)
Q Consensus 250 ----F~t~~~~~---~~~~~L~~S----pql~lk~l~~~g~~----rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a 310 (553)
|.|..-.. +...|||.- -=+.-+.++-..-. -+-+||++||||=+-. -+.-||+|+|+|.-
T Consensus 121 FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQIGk~FRNEIsPr~~l~R~REF~q~EiE~F 199 (539)
T PRK14894 121 FNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSARKLPFGIAQVGKAFRNEINPRNFLFRVREFEQMEIEYF 199 (539)
T ss_pred ccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcCCCCCeeEEeeeccccCccCCCCceeecccchhheEEEE
Confidence 33322111 246899932 22233343322111 6899999999994433 27889999999984
|
|
| >TIGR00156 conserved hypothetical protein TIGR00156 | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.91 Score=41.06 Aligned_cols=70 Identities=14% Similarity=0.311 Sum_probs=52.3
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeee
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPK 168 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~ 168 (553)
.+..|++.|.|.+.-..- . +..+|++|.|.|-++.+... -..++++|-|.|.|.+-+.- +..+|.|.
T Consensus 56 Ddt~V~L~G~Iv~~l~~d-~---Y~F~D~TG~I~VeId~~~w~--------G~~v~p~d~V~I~GeVDk~~-~~~~IdV~ 122 (126)
T TIGR00156 56 DGASVTLRGNIISHIGDD-R---YVFRDKSGEINVVIPAAVWN--------GREVQPKDMVNISGSLDKKS-APAEVDVT 122 (126)
T ss_pred CCCEEEEEEEEEEEeCCc-e---EEEECCCCCEEEEECHHHcC--------CCcCCCCCEEEEEEEECCCC-CCeEEEEE
Confidence 567899999998776544 3 55699999999998765321 23589999999999998643 34677777
Q ss_pred eEE
Q psy11418 169 KLT 171 (553)
Q Consensus 169 ~i~ 171 (553)
.|+
T Consensus 123 ~I~ 125 (126)
T TIGR00156 123 HIQ 125 (126)
T ss_pred EEE
Confidence 664
|
As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae. |
| >COG3111 Periplasmic protein with OB-fold [Function unknown] | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.77 Score=41.03 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=53.6
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeee
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPK 168 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~ 168 (553)
.+..|++.|-|.+.-..- - +..||++|.|+|-++.+... -..+++.|-|.+.|.+-+. -...+|.|+
T Consensus 56 Dda~V~l~GnIv~qi~~D-~---y~FrD~sGeI~VeIdd~~w~--------g~tv~P~dkV~I~GevDk~-~~~~eIdV~ 122 (128)
T COG3111 56 DDAWVSLEGNIVRQIGDD-R---YVFRDASGEINVDIDDKVWN--------GQTVTPKDKVRIQGEVDKD-WNSVEIDVK 122 (128)
T ss_pred cCCeEEEEeeEEEeeCCc-e---EEEEcCCccEEEEecccccC--------CcccCcccEEEEEeEEcCC-CccceeEhh
Confidence 456899999987654333 2 45699999999999876542 2358999999999999875 335677777
Q ss_pred eEEEe
Q psy11418 169 KLTLL 173 (553)
Q Consensus 169 ~i~il 173 (553)
.|+.+
T Consensus 123 ~I~k~ 127 (128)
T COG3111 123 HIEKL 127 (128)
T ss_pred heEec
Confidence 77654
|
|
| >cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG | Back alignment and domain information |
|---|
Probab=92.29 E-value=1 Score=35.44 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=45.6
Q ss_pred EEEEEEeeecC---CCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeE
Q psy11418 95 VAGRVHAIRES---GTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKL 170 (553)
Q Consensus 95 v~Gri~~~R~~---g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i 170 (553)
+.|.|.+.... |++..-+.+.|+++.+.+++-... .+ ..+.+..|+.+.|.|++... .|.+++.--++
T Consensus 2 i~~~V~~~~~~~~~~~~~~~~~~~D~~g~i~~~~F~~~-----~~--~~~~~~~G~~~~v~Gkv~~~-~~~~qi~~P~~ 72 (75)
T cd04488 2 VEGTVVSVEVVPRRGRRRLKVTLSDGTGTLTLVFFNFQ-----PY--LKKQLPPGTRVRVSGKVKRF-RGGLQIVHPEY 72 (75)
T ss_pred EEEEEEEEEeccCCCccEEEEEEEcCCCEEEEEEECCC-----HH--HHhcCCCCCEEEEEEEEeec-CCeeEEeCCcE
Confidence 55666654321 336777888999999999887521 12 24679999999999999754 35555544333
|
RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha |
| >PRK10053 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.88 Score=41.39 Aligned_cols=70 Identities=19% Similarity=0.325 Sum_probs=52.4
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeee
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPK 168 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~ 168 (553)
.+..|++.|.|.+.=..- + +..+|++|.|+|-++.+... -..+++.|-|.+.|.+-+.-+ ..+|.|+
T Consensus 60 Dd~~V~L~G~Iv~~lg~d-~---Y~F~D~tG~I~VeID~~~w~--------G~~v~p~~kV~I~GevDk~~~-~~~IdV~ 126 (130)
T PRK10053 60 DGATVSLRGNLIDHKGDD-R---YVFRDKSGEINVIIPAAVFD--------GREVQPDQMININGSLDKKSA-PPVVRVT 126 (130)
T ss_pred CCCeEEEEEEEEEEeCCc-e---EEEECCCCcEEEEeCHHHcC--------CCcCCCCCEEEEEEEECCCCC-CeEEEEE
Confidence 567899999997654333 3 45699999999998865431 236899999999999987633 4677777
Q ss_pred eEE
Q psy11418 169 KLT 171 (553)
Q Consensus 169 ~i~ 171 (553)
.|+
T Consensus 127 ~i~ 129 (130)
T PRK10053 127 HLQ 129 (130)
T ss_pred EEe
Confidence 764
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=92.01 E-value=1.7 Score=50.43 Aligned_cols=96 Identities=11% Similarity=0.160 Sum_probs=62.8
Q ss_pred CCCCCccccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecC--CCceEEEEEEeCCEEEEEEEecccCCCHHHHHH
Q psy11418 61 PYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRES--GTKLMFYDLRGEGLKIQVMANARMYQSEEEFAS 138 (553)
Q Consensus 61 pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~--g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~ 138 (553)
-||.++.....+..+. +...|+.|+|.|.|.+.+.. |+++.-+.+.|++|.+++++-.-. ..|
T Consensus 39 ~~P~~y~d~~~~~~i~---------~l~~g~~vtv~g~V~~~~~~~~~~~~~~v~l~D~tg~i~l~~F~~n----~~~-- 103 (681)
T PRK10917 39 HLPRRYEDRTRLKPIA---------ELRPGEKVTVEGEVLSAEVVFGKRRRLTVTVSDGTGNLTLRFFNFN----QPY-- 103 (681)
T ss_pred cCCCceEEcCCcCCHH---------HCCCCCEEEEEEEEEEEEEccCCceEEEEEEEECCeEEEEEEEccC----cHH--
Confidence 5787775543222221 12356789999999887533 446778889999999999887311 123
Q ss_pred HhccCCCCcEEEEEeecccccCCceeEeeeeEEE
Q psy11418 139 DLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTL 172 (553)
Q Consensus 139 ~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~i 172 (553)
..+.+..|+.+.|.|++.. ..|.+++.--++.+
T Consensus 104 ~~~~l~~G~~~~v~Gkv~~-~~~~~qm~~P~~~~ 136 (681)
T PRK10917 104 LKKQLKVGKRVAVYGKVKR-GKYGLEMVHPEYEV 136 (681)
T ss_pred HHhhCCCCCEEEEEEEEEe-cCCeEEEEcCEEEe
Confidence 2467999999999999975 33445554444433
|
|
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.21 Score=47.95 Aligned_cols=62 Identities=31% Similarity=0.423 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhCCcEEeeCceeeccC--CCccee--eeeecCCCCCcceeEEeChhHHHHHhc
Q psy11418 428 RAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAK--PFVTHHNDLNMDLYMRIAPELYLKSTH 489 (553)
Q Consensus 428 Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~~--~~~t~~~~~~~~~yL~~Spel~~k~l~ 489 (553)
|+.+.+.+|++|...||.||.||+|+... ...... ......+..+...+|+.|....+.++.
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~ 67 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLF 67 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHH
Confidence 67899999999999999999999998874 211100 111112244678899999999998764
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. |
| >KOG1035|consensus | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.57 Score=56.14 Aligned_cols=119 Identities=17% Similarity=0.199 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceecc---cc-CCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHcc---CCcEE
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNM---IA-GGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG---LDRVY 283 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~---~~-gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g---~~rVf 283 (553)
-.+|+.+...+-+.|+++|++|++||-+.. ++ +..++-.+.+ --|..+-|...--+..-+.++.. .-|-|
T Consensus 932 ~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~~~~~~~~~v~~ld---~sG~~v~Lp~DLr~pfar~vs~N~~~~~Kry 1008 (1351)
T KOG1035|consen 932 NELREYVVEEVVKIFRKHGAIELETPPLSLRNACAYFSRKAVELLD---HSGDVVELPYDLRLPFARYVSRNSVLSFKRY 1008 (1351)
T ss_pred HHHHHHHHHHHHHHHHHhcceeccCCccccccccchhccceeeeec---CCCCEEEeeccccchHHHHhhhchHHHHHHh
Confidence 356788888888999999999999997752 11 2222222222 23444444433333344433321 23779
Q ss_pred EEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCC
Q psy11418 284 EVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNR 334 (553)
Q Consensus 284 ei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~ 334 (553)
+|++|||-+. +. |-.|++.|+|.+...+ -.|++.++-+++..++.+.+-
T Consensus 1009 ~i~rVyr~~~-~~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~l~~~n~ 1061 (1351)
T KOG1035|consen 1009 CISRVYRPAI-HN-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTEILHEGNC 1061 (1351)
T ss_pred hhheeecccc-cC-CCccccceeeeEecCCCCccHHHHHHHHHHHHHHHhccCce
Confidence 9999999998 43 9999999999987663 678888888888887655543
|
|
| >cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC) | Back alignment and domain information |
|---|
Probab=91.03 E-value=2.8 Score=34.91 Aligned_cols=73 Identities=25% Similarity=0.388 Sum_probs=50.6
Q ss_pred EEEEEEEEeee----cCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCC-CCcEEEEEeeccccc-CCceeEe
Q psy11418 93 LSVAGRVHAIR----ESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIK-RGDIIGVTGSPGKTK-KGELSII 166 (553)
Q Consensus 93 V~v~Gri~~~R----~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~-~gd~V~v~G~~~~t~-~ge~~l~ 166 (553)
|+|.|-|-.+- +.|+.+.-+.|.|.+..+-|..-.+. ..+ ....|. .|++|.|+|.+.-.+ .+++.+.
T Consensus 2 v~i~G~Vf~~e~re~k~g~~i~~~~itD~t~Si~~K~F~~~--~~~----~~~~ik~~G~~v~v~G~v~~D~f~~e~~~~ 75 (82)
T cd04484 2 VVVEGEVFDLEIRELKSGRKILTFKVTDYTSSITVKKFLRK--DEK----DKEELKSKGDWVRVRGKVQYDTFSKELVLM 75 (82)
T ss_pred EEEEEEEEEEEEEEecCCCEEEEEEEEcCCCCEEEEEeccC--Chh----HHhhcccCCCEEEEEEEEEEccCCCceEEE
Confidence 67889887663 35545666899998876666544321 122 235688 999999999986544 6788888
Q ss_pred eeeEE
Q psy11418 167 PKKLT 171 (553)
Q Consensus 167 ~~~i~ 171 (553)
+..+.
T Consensus 76 i~~i~ 80 (82)
T cd04484 76 INDIE 80 (82)
T ss_pred eeeEE
Confidence 77654
|
Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis. |
| >COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.10 E-value=0.45 Score=52.71 Aligned_cols=78 Identities=23% Similarity=0.321 Sum_probs=58.5
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEee
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIP 167 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~ 167 (553)
..|++|.|.|-|..++.-+ +-.-+.|+|+++.+++-.-... |. ...-.+.+||+|.|+|.+.. ..|.+-|.+
T Consensus 211 ~ig~tV~I~GeV~qikqT~-GPTVFtltDetg~i~aAAFe~a--Gv----RAyP~IevGdiV~ViG~V~~-r~g~lQiE~ 282 (715)
T COG1107 211 MIGKTVRIEGEVTQIKQTS-GPTVFTLTDETGAIWAAAFEEA--GV----RAYPEIEVGDIVEVIGEVTR-RDGRLQIEI 282 (715)
T ss_pred hcCceEEEEEEEEEEEEcC-CCEEEEEecCCCceehhhhccC--Cc----ccCCCCCCCceEEEEEEEee-cCCcEEEee
Confidence 4688999999999999888 6677899999999988654322 11 12346999999999999863 455566666
Q ss_pred eeEEEe
Q psy11418 168 KKLTLL 173 (553)
Q Consensus 168 ~~i~il 173 (553)
.+++.|
T Consensus 283 ~~me~L 288 (715)
T COG1107 283 EAMEKL 288 (715)
T ss_pred hhhHHh
Confidence 666554
|
|
| >cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70) | Back alignment and domain information |
|---|
Probab=89.72 E-value=1.2 Score=38.80 Aligned_cols=58 Identities=22% Similarity=0.299 Sum_probs=43.9
Q ss_pred EEEEEEEEEe---ee---c---CCCceEEEEEEeC-CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecc
Q psy11418 92 TLSVAGRVHA---IR---E---SGTKLMFYDLRGE-GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPG 156 (553)
Q Consensus 92 ~V~v~Gri~~---~R---~---~g~kl~Fi~l~d~-~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~ 156 (553)
.++|.|||.+ +| . .| ++.-++|.|. ++.|++.+..+.. + .+...|..|+++.+.|--+
T Consensus 11 ~~~I~~rV~~k~~~~~f~~~~~~g-~~~~~~l~De~~~~I~~t~~~~~~---~---~f~~~l~eG~vy~i~~~~V 78 (104)
T cd04474 11 KWTIKARVTNKSDIRTWSNARGEG-KLFSFDLLDEDGGEIRATFFNDAV---D---KFYDLLEVGKVYYISKGSV 78 (104)
T ss_pred cEEEEEEEeeccccccccCCCCCc-EEEEEEEEECCCCEEEEEEehHHH---H---HhhcccccccEEEEeccEE
Confidence 4899999985 33 2 25 7888999999 8899999987542 2 3456799999999986433
|
RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct |
| >PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=89.54 E-value=1.4 Score=48.12 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=62.6
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc-ccCCceeEeeee
Q psy11418 91 VTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK-TKKGELSIIPKK 169 (553)
Q Consensus 91 ~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~-t~~ge~~l~~~~ 169 (553)
..|+|.|=|.+.+.++++=+|+.|.|....|-|++.+.... ...-.+..|+-|.|.|.+.- .+.|.+.|.+.+
T Consensus 24 ~~v~v~gEis~~~~~~sGH~Yf~Lkd~~a~i~~~~~~~~~~------~~~~~~~~G~~v~v~g~~~~y~~~g~~ql~v~~ 97 (438)
T PRK00286 24 GQVWVRGEISNFTRHSSGHWYFTLKDEIAQIRCVMFKGSAR------RLKFKPEEGMKVLVRGKVSLYEPRGDYQLIVEE 97 (438)
T ss_pred CcEEEEEEeCCCeeCCCCeEEEEEEcCCcEEEEEEEcChhh------cCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEE
Confidence 46999999999987644678999999999999999886431 12235899999999999874 568889999999
Q ss_pred EEEec
Q psy11418 170 LTLLS 174 (553)
Q Consensus 170 i~il~ 174 (553)
+...+
T Consensus 98 i~~~g 102 (438)
T PRK00286 98 IEPAG 102 (438)
T ss_pred eeeCC
Confidence 87643
|
|
| >PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [] | Back alignment and domain information |
|---|
Probab=88.97 E-value=0.87 Score=41.58 Aligned_cols=85 Identities=18% Similarity=0.230 Sum_probs=46.6
Q ss_pred cCCHHHHHHHhCC--CCcccccCCcEEEEEEEEEeeecCCCceEEEEEEeCC--EEEEEEEecccCCCHHHHHHHhccCC
Q psy11418 69 TSSLEDFIEKYSD--LPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEG--LKIQVMANARMYQSEEEFASDLVKIK 144 (553)
Q Consensus 69 ~~~~~~~~~~~~~--~~~~~~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~--~~iQvv~~~~~~~~~~~~~~~~~~l~ 144 (553)
..+..++.+.|.+ ........|+.|.|.|.|..+.....+-.++...+.. ..+++.+..+.. .. .....|.
T Consensus 44 ~~sa~~L~~~y~~N~~~A~~kY~gK~i~vtG~V~~I~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~-~~~~~l~ 118 (144)
T PF12869_consen 44 SVSAEELYKDYKDNEVAADKKYKGKIIEVTGTVSSIDKGFGDNYVVLLGTENGFAGVQCYFSNDQE----KR-ASVAKLK 118 (144)
T ss_dssp EEEHHHHHHHHHH-HHHHHHHHTT-EEEEEEEEEEEEE-STT-EEEEEE-TT-S-S--EEEEEEGG----GH-HHHHH--
T ss_pred eecHHHHHHHHHhCHHHHHhhcCCCEEEEEEEEEEEEEcCCCcEEEEccCCCCceeEEEEEccchh----hh-hhHhcCC
Confidence 3455677777732 1122334688999999999998633244555555533 478888877631 11 1234599
Q ss_pred CCcEEEEEeecccc
Q psy11418 145 RGDIIGVTGSPGKT 158 (553)
Q Consensus 145 ~gd~V~v~G~~~~t 158 (553)
.||.|.|+|...-.
T Consensus 119 ~G~~Vti~G~~~g~ 132 (144)
T PF12869_consen 119 KGQKVTIKGICTGY 132 (144)
T ss_dssp TTSEEEEEEE----
T ss_pred CCCEEEEEEEEEee
Confidence 99999999998644
|
; PDB: 3F1Z_I. |
| >PRK15491 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=88.76 E-value=2.2 Score=45.78 Aligned_cols=82 Identities=13% Similarity=0.157 Sum_probs=60.1
Q ss_pred cEEEEEEEEEee-------ecCC--CceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCC
Q psy11418 91 VTLSVAGRVHAI-------RESG--TKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKG 161 (553)
Q Consensus 91 ~~V~v~Gri~~~-------R~~g--~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~g 161 (553)
..|+|.|||.++ |..| .++.=+.|-|.+|.+++++-.+.. +.|. ...|..|+++.|.|.+.+.-.|
T Consensus 68 ~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG~ir~tlW~~~a---~~~~--~~~le~G~v~~I~~~~~~~y~g 142 (374)
T PRK15491 68 SNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETGSIRLTLWDDLA---DLIK--TGDIEVGKSLNISGYAKEGYSG 142 (374)
T ss_pred CceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCCeEEEEEECchh---hhhc--cCCcCCCCEEEEeeeeccCccc
Confidence 469999999987 3334 267668999999999999988642 1111 1358999999999985544444
Q ss_pred ceeEeeeeEEEeccCCC
Q psy11418 162 ELSIIPKKLTLLSPCLH 178 (553)
Q Consensus 162 e~~l~~~~i~il~~~~~ 178 (553)
++|.+..-..+.+|..
T Consensus 143 -~Ei~i~~~~~i~~~~~ 158 (374)
T PRK15491 143 -IEVNIGRYGGISESDE 158 (374)
T ss_pred -EEEEeCCCceeeeccc
Confidence 8888887777777754
|
|
| >cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14) | Back alignment and domain information |
|---|
Probab=88.38 E-value=4.5 Score=35.03 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=47.2
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCC-EEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEee
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEG-LKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIP 167 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~-~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~ 167 (553)
.|+.|++-|+|.+.+... +.+.+.. +.++|.++... .+..+-+|.|.|++.. ..+|.+
T Consensus 14 ~gk~V~ivGkV~~~~~~~-----~~~~~~Dg~~v~v~l~~~~------------~~~~~~~vEViG~V~~----~~~I~~ 72 (101)
T cd04479 14 VGKTVRIVGKVEKVDGDS-----LTLISSDGVNVTVELNRPL------------DLPISGYVEVIGKVSP----DLTIRV 72 (101)
T ss_pred CCCEEEEEEEEEEecCCe-----EEEEcCCCCEEEEEeCCCC------------CcccCCEEEEEEEECC----CCeEEE
Confidence 568999999999997543 4445443 58999987642 3577789999999973 366777
Q ss_pred eeEEEec
Q psy11418 168 KKLTLLS 174 (553)
Q Consensus 168 ~~i~il~ 174 (553)
..+.-++
T Consensus 73 ~~~~~~g 79 (101)
T cd04479 73 LSYIDFG 79 (101)
T ss_pred EEEEECC
Confidence 7765554
|
RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer. |
| >PRK13480 3'-5' exoribonuclease YhaM; Provisional | Back alignment and domain information |
|---|
Probab=88.33 E-value=5.6 Score=41.69 Aligned_cols=65 Identities=15% Similarity=0.139 Sum_probs=50.2
Q ss_pred cCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccC
Q psy11418 104 ESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPC 176 (553)
Q Consensus 104 ~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~ 176 (553)
+.|+.-..+.|.|.+|.|.+.+.... ++ ....+..|++|.|.|.+.. =+|.+.+.+..+..+.+.
T Consensus 29 knG~~yl~l~l~D~tG~I~ak~W~~~---~~----~~~~~~~g~vv~v~G~v~~-y~g~~Ql~i~~i~~~~~~ 93 (314)
T PRK13480 29 SNGKPFLTLILQDKSGDIEAKLWDVS---PE----DEATYVPETIVHVKGDIIN-YRGRKQLKVNQIRLATEE 93 (314)
T ss_pred CCCCeEEEEEEEcCCcEEEEEeCCCC---hh----hHhhcCCCCEEEEEEEEEE-ECCcceEEEEEeEECCCC
Confidence 44545667888899999999997653 22 2456899999999999974 467788889999988764
|
|
| >COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=88.30 E-value=2.8 Score=40.83 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=55.4
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEE
Q psy11418 92 TLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLT 171 (553)
Q Consensus 92 ~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~ 171 (553)
.|++.|||+++..+- .-+|+.|.||+|.|-|-...... .-.+..+.+.-|-.|.|.|.+. +=.|...|.+.-|.
T Consensus 68 ~V~fVGvvrni~~~t-tn~~~~iEDGTG~Ievr~W~~~~----~~~e~~~d~~~~~yvkV~G~lk-~F~GK~~I~~~~i~ 141 (258)
T COG5235 68 NVQFVGVVRNIKTST-TNSMFVIEDGTGSIEVRFWPGNS----YEEEQCKDLEEQNYVKVNGSLK-TFNGKRSISASHIS 141 (258)
T ss_pred eEEEEEEEEeeeecc-cceEEEEecCCceEEEEecCCCc----hHHHhccccccccEEEEeccee-eeCCeeEEehhhee
Confidence 589999999999997 56789999999999998877542 1123456677888999999864 34566666665443
|
|
| >PRK14699 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=87.59 E-value=2.7 Score=46.62 Aligned_cols=83 Identities=18% Similarity=0.196 Sum_probs=58.9
Q ss_pred CcEEEEEEEEEee-------ecCC--CceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhc--cCCCCcEEEEEeecccc
Q psy11418 90 NVTLSVAGRVHAI-------RESG--TKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLV--KIKRGDIIGVTGSPGKT 158 (553)
Q Consensus 90 ~~~V~v~Gri~~~-------R~~g--~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~--~l~~gd~V~v~G~~~~t 158 (553)
+..|++.|||.++ |..| .+++=+.|-|.+|+|.+++-.+.. ..+. .|..||+|.|.|.+ +.
T Consensus 67 ~~~v~i~~rVl~i~~~r~f~r~dG~~g~v~~~~iaDeTG~ir~tlW~~~a-------~~~~~g~l~~GDvv~I~~~~-r~ 138 (484)
T PRK14699 67 SGPVNFIARVVSVFDTKEFTRNDGTIGRVGNLIVGDETGKIKLTLWDNMA-------DLIKAGKIKAGQTLQISGYA-KQ 138 (484)
T ss_pred CceEEEEEEEEEecCceEEecCCCCceEEEEEEEecCCCeEEEEEecCcc-------chhhhcCCCCCCEEEEccee-cc
Confidence 3579999999998 3345 256666889999999999987642 1222 59999999999974 34
Q ss_pred cCCceeEeeeeEEEeccCCCCC
Q psy11418 159 KKGELSIIPKKLTLLSPCLHML 180 (553)
Q Consensus 159 ~~ge~~l~~~~i~il~~~~~~l 180 (553)
..+.++|.+.....+.++...+
T Consensus 139 ~~~g~el~~~~~~~i~~~~~~i 160 (484)
T PRK14699 139 GYSGVEVNIGNNGVLTESEEEI 160 (484)
T ss_pred CCCCceEEeCCCceeeccCccc
Confidence 3445788887666666644333
|
|
| >COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=87.42 E-value=1.9 Score=46.90 Aligned_cols=75 Identities=13% Similarity=0.251 Sum_probs=61.0
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc-ccCCceeEeeeeE
Q psy11418 92 TLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK-TKKGELSIIPKKL 170 (553)
Q Consensus 92 ~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~-t~~ge~~l~~~~i 170 (553)
.|+|.|-|.+++...++-.|+.|.|+...|+|++.+.... ...-.+.-|+-|.|+|.+.- .+.|.+.|.++++
T Consensus 25 ~V~v~GEISn~t~~~sgH~YFtLKD~~A~i~c~mf~~~~~------~l~f~p~eG~~V~v~G~is~Y~~rG~YQi~~~~~ 98 (440)
T COG1570 25 QVWVRGEISNFTRPASGHLYFTLKDERAQIRCVMFKGNNR------RLKFRPEEGMQVLVRGKISLYEPRGDYQIVAESM 98 (440)
T ss_pred eEEEEEEecCCccCCCccEEEEEccCCceEEEEEEcCccc------ccCCCccCCCEEEEEEEEEEEcCCCceEEEEecC
Confidence 5999999999997765678999999999999999886431 12234899999999999875 4689999988877
Q ss_pred EE
Q psy11418 171 TL 172 (553)
Q Consensus 171 ~i 172 (553)
+-
T Consensus 99 ~p 100 (440)
T COG1570 99 EP 100 (440)
T ss_pred Cc
Confidence 64
|
|
| >COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.10 E-value=2.2 Score=41.14 Aligned_cols=75 Identities=24% Similarity=0.207 Sum_probs=53.3
Q ss_pred CCcEEEEEEEEEeee-cCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHh---ccCCCCcEEEEEeecccccCCcee
Q psy11418 89 ENVTLSVAGRVHAIR-ESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDL---VKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R-~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~---~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
..+.|+|.|-|.+.+ ..|.++.++.|.|++|+|-+++..+. +.+.... --+..|++|.|+|.+..- +|..+
T Consensus 50 l~e~v~vkg~V~~~~n~~~~gi~~l~lndgtGti~vva~~~t----ee~l~~n~~~p~~~eGe~veVtGrv~~y-rG~~e 124 (204)
T COG4085 50 LNEEVTVKGEVTADQNAIGGGIESLVLNDGTGTITVVASRST----EETLELNEGMPVTVEGEIVEVTGRVEEY-RGSSE 124 (204)
T ss_pred eeccceeeeEEEeeecccccceEEEEEECCCCcEEEEEecCh----hHhHhhcCCCCccccCcEEEEEEEEEEe-CCCce
Confidence 345688999999998 55668999999999999998887753 2222211 135689999999987532 34445
Q ss_pred Eeee
Q psy11418 165 IIPK 168 (553)
Q Consensus 165 l~~~ 168 (553)
|.+.
T Consensus 125 Vkvn 128 (204)
T COG4085 125 VKVN 128 (204)
T ss_pred eecc
Confidence 5443
|
|
| >KOG2509|consensus | Back alignment and domain information |
|---|
Probab=86.89 E-value=2.5 Score=45.58 Aligned_cols=118 Identities=19% Similarity=0.261 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc----cCCCCCcceee---ccCCCCcceeeeeCHHHHHHHHHHcc-C--
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI----AGGATAKPFVT---HHNDLNMDLYMRIAPELYLKMLVVGG-L-- 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~gga~a~~F~t---~~~~~~~~~~L~~Spql~lk~l~~~g-~-- 279 (553)
...+-.++++..-+|+.++||+-+.||.|... .+|-..+ |.- +.-.-+.+.||--..|..+-.+-.+- |
T Consensus 184 ~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~cg~~~~-~d~~~~y~ld~~~~~~LiaTaE~plAa~~~~e~~~~ 262 (455)
T KOG2509|consen 184 GAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQKCGQLPR-FDEEQYYVLDGGDEKYLIATAEQPLAAYHRDEWLEE 262 (455)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHHhccCcC-CCcceEEeecCCccceeEeeccchhhhhhccccccc
Confidence 44677788999999999999999999999531 2332111 210 00011234677766666665442211 0
Q ss_pred ----CcEEEEccccccCCC----CCC---ccCCcceeeeEe------ccCCHHHHHHHHHHHHhcc
Q psy11418 280 ----DRVYEVGRQFRNEGI----DLT---HNPEFTTCEFYM------AYADYNDLMHLTEDLISGR 328 (553)
Q Consensus 280 ----~rVfei~~~FR~E~~----~~~---H~~EFt~lE~e~------a~~~~~~~m~~~e~li~~~ 328 (553)
-|+--.+.|||.|-. |++ +.-+|+-+|.-. ++.-+++|+...|++++.+
T Consensus 263 ~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~Pe~S~~~~eEmi~~~eef~qsL 328 (455)
T KOG2509|consen 263 DQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGPEDSWEMLEEMINNQEEFYQSL 328 (455)
T ss_pred ccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEecCcchhHHHHHHHHHHHHHHHHHh
Confidence 155567999999963 343 445788888653 2223888888888888877
|
|
| >TIGR00237 xseA exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Probab=85.60 E-value=3.1 Score=45.50 Aligned_cols=75 Identities=12% Similarity=0.217 Sum_probs=60.4
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc-ccCCceeEeeeeE
Q psy11418 92 TLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK-TKKGELSIIPKKL 170 (553)
Q Consensus 92 ~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~-t~~ge~~l~~~~i 170 (553)
.|+|.|-|.+.+.+.++=+|+.|.|....|.||+.+.... ...-.+.-|+-|.|.|.+.- .+.|.+.|.+.++
T Consensus 19 ~v~V~GEisn~~~~~sGH~YFtLkD~~a~i~~vmf~~~~~------~l~f~~~~G~~V~v~g~v~~y~~~G~~ql~v~~i 92 (432)
T TIGR00237 19 QVWIQGEISNFTQPVSGHWYFTLKDENAQVRCVMFRGNNN------RLKFRPQNGQQVLVRGGISVYEPRGDYQIICFEM 92 (432)
T ss_pred cEEEEEEecCCeeCCCceEEEEEEcCCcEEEEEEEcChhh------CCCCCCCCCCEEEEEEEEEEECCCCcEEEEEEEe
Confidence 5999999999986654568999999999999999876421 11224799999999999864 5688899999988
Q ss_pred EE
Q psy11418 171 TL 172 (553)
Q Consensus 171 ~i 172 (553)
..
T Consensus 93 ~~ 94 (432)
T TIGR00237 93 QP 94 (432)
T ss_pred cc
Confidence 75
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits. |
| >PRK06461 single-stranded DNA-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=85.18 E-value=7.5 Score=35.22 Aligned_cols=75 Identities=12% Similarity=0.164 Sum_probs=53.2
Q ss_pred cEEEEEEEEEeee-------cCC-CceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCc
Q psy11418 91 VTLSVAGRVHAIR-------ESG-TKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGE 162 (553)
Q Consensus 91 ~~V~v~Gri~~~R-------~~g-~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge 162 (553)
..|.+.|.|.++- +.| ..+.-+.|.|.+|.|.+.+..+. ...+..||+|.|.|-....-.|.
T Consensus 15 ~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG~I~~tlW~~~----------a~~l~~GdvV~I~na~v~~f~G~ 84 (129)
T PRK06461 15 ERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETGRVKLTLWGEQ----------AGSLKEGEVVEIENAWTTLYRGK 84 (129)
T ss_pred CceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCCEEEEEEeCCc----------cccCCCCCEEEEECcEEeeeCCE
Confidence 3588888888432 222 23666888999999999987753 12478999999995544455788
Q ss_pred eeEeeee---EEEecc
Q psy11418 163 LSIIPKK---LTLLSP 175 (553)
Q Consensus 163 ~~l~~~~---i~il~~ 175 (553)
++|.+.. +..+..
T Consensus 85 lqL~i~~~~~i~~~~~ 100 (129)
T PRK06461 85 VQLNVGKYGSISESDD 100 (129)
T ss_pred EEEEECCCEEEEECCc
Confidence 8998884 565554
|
|
| >cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB) | Back alignment and domain information |
|---|
Probab=84.43 E-value=6.4 Score=32.31 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=40.1
Q ss_pred ceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE-eecccccCCceeEeeeeE
Q psy11418 108 KLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT-GSPGKTKKGELSIIPKKL 170 (553)
Q Consensus 108 kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~-G~~~~t~~ge~~l~~~~i 170 (553)
++.=+.|.|++|.|.+++-... . ...+..||+|.+. |.+ +.-.|.++|.+.+.
T Consensus 23 ~~~~~~l~D~TG~i~~~~W~~~----~-----~~~~~~G~vv~i~~~~v-~~~~g~~ql~i~~~ 76 (82)
T cd04491 23 KVQSGLVGDETGTIRFTLWDEK----A-----ADDLEPGDVVRIENAYV-REFNGRLELSVGKN 76 (82)
T ss_pred EEEEEEEECCCCEEEEEEECch----h-----cccCCCCCEEEEEeEEE-EecCCcEEEEeCCc
Confidence 6777888899999999988652 1 3468999999999 555 34457788877654
|
SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating |
| >TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit | Back alignment and domain information |
|---|
Probab=84.03 E-value=4.1 Score=46.01 Aligned_cols=115 Identities=15% Similarity=0.155 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhhhCCeEEEecceeccccCC--C---CCcceeeccCCCCcc-eeeeeCHHHHHHHHHHccCC-----cE
Q psy11418 214 RAQIIAYVRRYLDSLGFLEVETPMMNMIAGG--A---TAKPFVTHHNDLNMD-LYMRIAPELYLKMLVVGGLD-----RV 282 (553)
Q Consensus 214 rs~i~~~ir~fl~~~gF~EV~TPil~~~~gg--a---~a~~F~t~~~~~~~~-~~L~~Spql~lk~l~~~g~~-----rV 282 (553)
.....+.+|++|...||.|+-|-.+++...- . ....+..-.|-...+ -+||.|.=--|=..+..... |+
T Consensus 364 ~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~~~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~~~~~~~~l 443 (551)
T TIGR00471 364 LNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIEDNNDVKVANPKTLEYTIVRTSLLPGLLETLSENKHHELPQKI 443 (551)
T ss_pred HHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhccCCCCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcccCCCCeeE
Confidence 3455678899999999999999999653110 0 000111112222222 35776632222112222221 79
Q ss_pred EEEccccccCCCCCCccCCcceeeeEecc--CCHHHHHHHHHHHHhcc
Q psy11418 283 YEVGRQFRNEGIDLTHNPEFTTCEFYMAY--ADYNDLMHLTEDLISGR 328 (553)
Q Consensus 283 fei~~~FR~E~~~~~H~~EFt~lE~e~a~--~~~~~~m~~~e~li~~~ 328 (553)
||||++|...+.+..+..+|.++-+-.+. .|+.|+...+|.++..+
T Consensus 444 FEiG~Vf~~~~~~~~~e~~~~~l~~~~~g~~~df~d~Kg~ve~ll~~l 491 (551)
T TIGR00471 444 FEIGDVVVKDDKSETRSRVVTKLAVGITHSEANFNEIKSIVAALAREL 491 (551)
T ss_pred EEEEEEEEcCCccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 99999996532211244455777776664 48999999999999766
|
Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes. |
| >PRK12366 replication factor A; Reviewed | Back alignment and domain information |
|---|
Probab=83.04 E-value=4.9 Score=46.27 Aligned_cols=77 Identities=13% Similarity=0.189 Sum_probs=56.2
Q ss_pred CCcEEEEEEEEEeee---------cCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc--
Q psy11418 89 ENVTLSVAGRVHAIR---------ESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK-- 157 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R---------~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~-- 157 (553)
.|..++|.|||.++- ..| ++.=++|.|++|.|.+++-.+.. +.| ..|..||++.+.|-..+
T Consensus 290 ~g~~~~I~grV~~~~~~R~f~~~~g~g-kv~s~~l~D~tG~IR~t~w~~~~---d~~----~~l~~G~vy~is~~~vk~y 361 (637)
T PRK12366 290 DGEEVDVKGRIIAISDKREVERDDRTA-EVQDIELADGTGRVRVSFWGEKA---KIL----ENLKEGDAVKIENCKVRTY 361 (637)
T ss_pred CCCEEEEEEEEEecCCceEEEcCCCcE-EEEEEEEEcCCCeEEEEEeCchh---hhh----cccCCCCEEEEecCEEeec
Confidence 345799999999873 235 78889999999999999987643 222 34679999999975555
Q ss_pred ---ccCCceeEeeeeEEEe
Q psy11418 158 ---TKKGELSIIPKKLTLL 173 (553)
Q Consensus 158 ---t~~ge~~l~~~~i~il 173 (553)
...++++|.+..-..+
T Consensus 362 ~~~~~~~~~El~~~~~s~I 380 (637)
T PRK12366 362 YDNEGEKRVDLNAGYSSEI 380 (637)
T ss_pred cccCCCcCEEEEcCCceEE
Confidence 4456788877554433
|
|
| >PRK07459 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=82.70 E-value=13 Score=33.22 Aligned_cols=79 Identities=24% Similarity=0.329 Sum_probs=50.8
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE-------eCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc-
Q psy11418 92 TLSVAGRVHA---IRE--SGTKLMFYDLR-------GEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT- 158 (553)
Q Consensus 92 ~V~v~Gri~~---~R~--~g~kl~Fi~l~-------d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t- 158 (553)
.|.|.||+.+ +|. .|+.++=+.|- +.+.-+.|++-.+. .+ ...+.|..||.|.|+|.+...
T Consensus 5 ~v~LiGrL~~DPelr~t~~G~~v~~fslAv~~~~~~~~t~w~~v~~wg~~----Ae--~~~~~l~KG~~V~V~G~l~~~~ 78 (121)
T PRK07459 5 SVTLVGRAGRDPEVRYFESGSVVCNLTLAVNRRSRDDEPDWFNLEIWGKT----AQ--VAADYVKKGSLIGITGSLKFDR 78 (121)
T ss_pred EEEEEEEccCCCEEEEcCCCCEEEEEEEEecccccCCCceEEEEEEehHH----HH--HHHHHcCCCCEEEEEEEEEecc
Confidence 4788888876 343 34333333333 23446777776542 12 235679999999999998632
Q ss_pred ---cC-C----ceeEeeeeEEEeccC
Q psy11418 159 ---KK-G----ELSIIPKKLTLLSPC 176 (553)
Q Consensus 159 ---~~-g----e~~l~~~~i~il~~~ 176 (553)
+. | ..+|.+++|.+|++.
T Consensus 79 ~~d~d~G~~r~~~ei~a~~i~~L~~k 104 (121)
T PRK07459 79 WTDRNTGEDRSKPVIRVDRLELLGSK 104 (121)
T ss_pred eEcCCCCeEEEEEEEEEeEEEECcCC
Confidence 22 4 368899999999743
|
|
| >PRK04036 DNA polymerase II small subunit; Validated | Back alignment and domain information |
|---|
Probab=80.06 E-value=18 Score=40.37 Aligned_cols=109 Identities=18% Similarity=0.249 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecCCCceEEEEEEeCCE
Q psy11418 40 TSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGL 119 (553)
Q Consensus 40 ~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~ 119 (553)
-..+++.|+.+|..+.....+. ..+..+. ++.. .++++.|.|-|..+|...++-..+.|.|.+|
T Consensus 119 ~~~~y~~R~~~L~~~l~~~~~~--------~~i~~l~----~~~~----~~~~~~viG~v~~~~~~~~g~~~~~LED~sg 182 (504)
T PRK04036 119 FVAYFRDRYEKLSKIIRGRVNH--------RPIESLK----KLKR----GGEEVSIIGMVSDIRSTKNGHKIVELEDTTG 182 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhccc--------ccHHHHh----cCcc----CCceEEEEEEEEEeecccCCceEEEEECCCC
Confidence 4556788999887765432221 1222222 2210 3457999999999985432222478999999
Q ss_pred EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEE
Q psy11418 120 KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLT 171 (553)
Q Consensus 120 ~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~ 171 (553)
.+++++.++. ..+......+-.|.+|+|.|... ..| -.+.|.++.
T Consensus 183 rv~l~~~~~~----~~~~~~~~~lvtg~vv~v~G~~~--~~g-~~f~v~~i~ 227 (504)
T PRK04036 183 TFPVLIMKDR----EDLAELADELLLDEVIGVEGTLS--GDG-GLIFADEII 227 (504)
T ss_pred eEEEEeecch----hhhhhhhhcccCceEEEEEEEEc--CCC-CEEEEEEEE
Confidence 9999986532 12222234689999999999865 333 124455543
|
|
| >PRK07211 replication factor A; Reviewed | Back alignment and domain information |
|---|
Probab=80.01 E-value=10 Score=42.09 Aligned_cols=72 Identities=14% Similarity=0.239 Sum_probs=53.6
Q ss_pred cEEEEEEEEEeeec-----------CCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc
Q psy11418 91 VTLSVAGRVHAIRE-----------SGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK 159 (553)
Q Consensus 91 ~~V~v~Gri~~~R~-----------~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~ 159 (553)
..|+|.|||.++-. .| ++.=+.|-|.+|.|.+++..+.. + .....|..||++.|.|.+. ..
T Consensus 64 ~~vtI~aRV~~~~~~Rt~~~~~~~~eG-kv~~v~l~DeTG~Ir~TlW~d~a---d---~~~~~Le~GdV~~I~~~~~-~~ 135 (485)
T PRK07211 64 DEVKFLAKVLSIGDLRTFERDGEDEDG-RVINVEVADETGSVRVAFWDEQA---V---AAEEELEVGQVLRIKGRPK-DG 135 (485)
T ss_pred CceEEEEEEeEccCceEEEeCCCCCCc-EEEEEEEEcCCCeEEEEEechHh---H---hhhcccCCCCEEEEeceEe-cc
Confidence 45999999987633 34 89899999999999999987643 1 2346799999999998764 33
Q ss_pred CCceeEeeeeE
Q psy11418 160 KGELSIIPKKL 170 (553)
Q Consensus 160 ~ge~~l~~~~i 170 (553)
-+.++|.+..+
T Consensus 136 ys~~El~i~~v 146 (485)
T PRK07211 136 YNGLEVSVDKV 146 (485)
T ss_pred ccceEEEEeeE
Confidence 33467777643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 553 | ||||
| 4dpg_A | 513 | Crystal Structure Of Human Lysrs: P38/aimp2 Complex | 1e-123 | ||
| 4dpg_A | 513 | Crystal Structure Of Human Lysrs: P38/aimp2 Complex | 7e-63 | ||
| 4dpg_A | 513 | Crystal Structure Of Human Lysrs: P38/aimp2 Complex | 6e-15 | ||
| 3bju_A | 521 | Crystal Structure Of Tetrameric Form Of Human Lysyl | 1e-123 | ||
| 3bju_A | 521 | Crystal Structure Of Tetrameric Form Of Human Lysyl | 7e-63 | ||
| 3bju_A | 521 | Crystal Structure Of Tetrameric Form Of Human Lysyl | 7e-15 | ||
| 1lyl_A | 504 | Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexe | 3e-66 | ||
| 1lyl_A | 504 | Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexe | 4e-38 | ||
| 3e9h_A | 493 | Lysyl-Trna Synthetase From Bacillus Stearothermophi | 1e-65 | ||
| 3e9h_A | 493 | Lysyl-Trna Synthetase From Bacillus Stearothermophi | 6e-36 | ||
| 1bbu_A | 504 | Lysyl-Trna Synthetase (Lyss) Complexed With Lysine | 4e-63 | ||
| 1bbu_A | 504 | Lysyl-Trna Synthetase (Lyss) Complexed With Lysine | 1e-36 | ||
| 4ex5_A | 529 | Crystal Structure Of Lysyl-Trna Synthetase Lysrs Fr | 3e-56 | ||
| 4ex5_A | 529 | Crystal Structure Of Lysyl-Trna Synthetase Lysrs Fr | 1e-32 | ||
| 4ah6_A | 617 | Human Mitochondrial Aspartyl-Trna Synthetase Length | 6e-16 | ||
| 1wyd_A | 429 | Crystal Structure Of Aspartyl-Trna Synthetase From | 1e-14 | ||
| 1c0a_A | 585 | Crystal Structure Of The E. Coli Aspartyl-Trna Synt | 3e-14 | ||
| 1c0a_A | 585 | Crystal Structure Of The E. Coli Aspartyl-Trna Synt | 3e-07 | ||
| 3a5y_A | 345 | Crystal Structure Of Genx From Escherichia Coli In | 3e-14 | ||
| 1eqr_A | 590 | Crystal Structure Of Free Aspartyl-Trna Synthetase | 3e-14 | ||
| 1eqr_A | 590 | Crystal Structure Of Free Aspartyl-Trna Synthetase | 3e-07 | ||
| 3a5z_A | 328 | Crystal Structure Of Escherichia Coli Genx In Compl | 3e-14 | ||
| 3g1z_A | 326 | Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthe | 1e-13 | ||
| 1b8a_A | 438 | Aspartyl-trna Synthetase Length = 438 | 1e-13 | ||
| 1b8a_A | 438 | Aspartyl-trna Synthetase Length = 438 | 2e-04 | ||
| 3nel_A | 438 | Aspartyl-Trna Synthetase Complexed With Aspartic Ac | 1e-13 | ||
| 3nel_A | 438 | Aspartyl-Trna Synthetase Complexed With Aspartic Ac | 2e-04 | ||
| 1efw_A | 580 | Crystal Structure Of Aspartyl-Trna Synthetase From | 1e-12 | ||
| 1n9w_A | 422 | Crystal Structure Of The Non-Discriminating And Arc | 4e-09 | ||
| 1eov_A | 487 | Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.1 | 2e-08 | ||
| 1asy_A | 490 | Class Ii Aminoacyl Transfer Rna Synthetases: Crysta | 2e-08 | ||
| 3i7f_A | 548 | Aspartyl Trna Synthetase From Entamoeba Histolytica | 8e-06 |
| >pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I Length = 513 | Back alignment and structure |
|
| >pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I Length = 513 | Back alignment and structure |
|
| >pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I Length = 513 | Back alignment and structure |
|
| >pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna Synthetase Length = 521 | Back alignment and structure |
|
| >pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna Synthetase Length = 521 | Back alignment and structure |
|
| >pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna Synthetase Length = 521 | Back alignment and structure |
|
| >pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With Lysine Length = 504 | Back alignment and structure |
|
| >pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With Lysine Length = 504 | Back alignment and structure |
|
| >pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus Complexed With L-Lysylsulfamoyl Adenosine Length = 493 | Back alignment and structure |
|
| >pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus Complexed With L-Lysylsulfamoyl Adenosine Length = 493 | Back alignment and structure |
|
| >pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine Length = 504 | Back alignment and structure |
|
| >pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine Length = 504 | Back alignment and structure |
|
| >pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From Burkholderia Thailandensis Bound To Lysine Length = 529 | Back alignment and structure |
|
| >pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From Burkholderia Thailandensis Bound To Lysine Length = 529 | Back alignment and structure |
|
| >pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase Length = 617 | Back alignment and structure |
|
| >pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Sulfolobus Tokodaii Length = 429 | Back alignment and structure |
|
| >pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase : Trnaasp : Aspartyl-Adenylate Complex Length = 585 | Back alignment and structure |
|
| >pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase : Trnaasp : Aspartyl-Adenylate Complex Length = 585 | Back alignment and structure |
|
| >pdb|3A5Y|A Chain A, Crystal Structure Of Genx From Escherichia Coli In Complex With Lysyladenylate Analog Length = 345 | Back alignment and structure |
|
| >pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From Escherichia Coli Length = 590 | Back alignment and structure |
|
| >pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From Escherichia Coli Length = 590 | Back alignment and structure |
|
| >pdb|3A5Z|A Chain A, Crystal Structure Of Escherichia Coli Genx In Complex With Elongation Factor P Length = 328 | Back alignment and structure |
|
| >pdb|3G1Z|A Chain A, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase From Salmonella Typhimurium Length = 326 | Back alignment and structure |
|
| >pdb|1B8A|A Chain A, Aspartyl-trna Synthetase Length = 438 | Back alignment and structure |
|
| >pdb|1B8A|A Chain A, Aspartyl-trna Synthetase Length = 438 | Back alignment and structure |
|
| >pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid Length = 438 | Back alignment and structure |
|
| >pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid Length = 438 | Back alignment and structure |
|
| >pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus Thermophilus Complexed To Trnaasp From Escherichia Coli Length = 580 | Back alignment and structure |
|
| >pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal- Type Aspartyl-Trna Synthetase From Thermus Thermophilus Length = 422 | Back alignment and structure |
|
| >pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From Yeast Length = 487 | Back alignment and structure |
|
| >pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal Structure Of Yeast Aspartyl-Trna Synthetase Complexed With Trna Asp Length = 490 | Back alignment and structure |
|
| >pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica Length = 548 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Length = 521 | Back alignment and structure |
|---|
Score = 512 bits (1321), Expect = e-178
Identities = 201/287 (70%), Positives = 248/287 (86%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVH 100
++++++RS A+ Q+K G PYPHKF V SL DFI+KYS L L ++TL VAGR+H
Sbjct: 6 NQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIH 65
Query: 101 AIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK 160
A R SG KL+FYDLRGEG+K+QVMAN+R Y+SEEEF K++RGDIIGV G+PGKTKK
Sbjct: 66 AKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKK 125
Query: 161 GELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAY 220
GELSIIP ++TLLSPCLHMLPH+HFG+KDKETR+RQRYLDL++N+ +R KFI+R++II Y
Sbjct: 126 GELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITY 185
Query: 221 VRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLD 280
+R +LD LGFLE+ETPMMN+I GGA AKPF+T+HN+L+M+LYMRIAPELY KMLVVGG+D
Sbjct: 186 IRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGID 245
Query: 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
RVYE+GRQFRNEGIDLTHNPEFTTCEFYMAYADY+DLM +TE ++SG
Sbjct: 246 RVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSG 292
|
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Length = 521 | Back alignment and structure |
|---|
Score = 315 bits (810), Expect = e-101
Identities = 144/271 (53%), Positives = 177/271 (65%), Gaps = 59/271 (21%)
Query: 337 VMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPH 396
VMAN+R Y+SEEEF K++RGDIIGV G+PGKTKKGELSIIP ++TLLSPCLHMLPH
Sbjct: 88 VMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPH 147
Query: 397 MHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456
+HFG+KDKETR+RQRYLDL++N+ +R KFI+R++II Y+R +LD LGFLE+ETPMMN+I
Sbjct: 148 LHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIP 207
Query: 457 GGATAKPFVTHHNDLNMDLYMRIAP----------------------------------- 481
GGA AKPF+T+HN+L+M+LYMRIAP
Sbjct: 208 GGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEF 267
Query: 482 ---ELY--------------------LKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRL 518
E Y +K GSYKVTYHPDGPE G ++DFTPPFRR+
Sbjct: 268 TTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPE-GQAYDVDFTPPFRRI 326
Query: 519 HMFPALEAALGVKLPNPTEFDTPEANKFLSD 549
+M LE ALG+KLP F+T E K L D
Sbjct: 327 NMVEELEKALGMKLPETNLFETEETRKILDD 357
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Length = 493 | Back alignment and structure |
|---|
Score = 387 bits (996), Expect = e-130
Identities = 133/287 (46%), Positives = 184/287 (64%), Gaps = 4/287 (1%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLE-NVTLSVAGRV 99
++ R+R +++++E G P+ +F T E+ E Y DL ++ E + ++VAGR+
Sbjct: 6 NDQLRVRREKLKKIEELGVDPFGKRFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRI 65
Query: 100 HAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK 159
R G K F ++ +IQ+ + E+++ GDI+GV G+ KTK
Sbjct: 66 MTKRGMG-KAGFAHIQDVTGQIQIYVR-QDDVGEQQYE-LFKISDLGDIVGVRGTMFKTK 122
Query: 160 KGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIA 219
GELSI L+ L LP + G+KD E R+RQRYLDL++N + FI R+ II
Sbjct: 123 VGELSIKVSSYEFLTKALRPLPEKYHGLKDIEQRYRQRYLDLIMNPESKKTFITRSLIIQ 182
Query: 220 YVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL 279
+RRYLDS G+LEVETPMM+ +AGGA A+PF+THHN L+M LYMRIA EL+LK L+VGGL
Sbjct: 183 SMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELHLKRLIVGGL 242
Query: 280 DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
++VYE+GR FRNEGI HNPEFT E Y AYAD+ D+M LTE+LI+
Sbjct: 243 EKVYEIGRVFRNEGISTRHNPEFTMLELYEAYADFRDIMKLTENLIA 289
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Length = 493 | Back alignment and structure |
|---|
Score = 221 bits (567), Expect = 4e-66
Identities = 75/139 (53%), Positives = 94/139 (67%)
Query: 348 EEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETR 407
E+ GDI+GV G+ KTK GELSI L+ L LP + G+KD E R
Sbjct: 97 EQQYELFKISDLGDIVGVRGTMFKTKVGELSIKVSSYEFLTKALRPLPEKYHGLKDIEQR 156
Query: 408 FRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTH 467
+RQRYLDL++N + FI R+ II +RRYLDS G+LEVETPMM+ +AGGA A+PF+TH
Sbjct: 157 YRQRYLDLIMNPESKKTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITH 216
Query: 468 HNDLNMDLYMRIAPELYLK 486
HN L+M LYMRIA EL+LK
Sbjct: 217 HNALDMTLYMRIAIELHLK 235
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Length = 529 | Back alignment and structure |
|---|
Score = 385 bits (992), Expect = e-128
Identities = 123/327 (37%), Positives = 174/327 (53%), Gaps = 9/327 (2%)
Query: 1 MINERIRHLPNLSGAENSQQHTTAQTVTHLNTNYTQQCLTSEFFRLRSAAVEQMKEQGPH 60
M + H+ L E Q + T ++ R + +++QG
Sbjct: 1 MAHHHHHHMGTL---EAQTQGPGSMTEPIQPQAAVAADE-NQIVAERRDKLRALRDQGI- 55
Query: 61 PYPHKFTVTSSLEDFIEKYSDLPDAQVLE-NVTLSVAGRVHAIRESGTKLMFYDLRGEGL 119
YP+ F T D Y+D + ++ +++AGR+ R G K F ++
Sbjct: 56 AYPNDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMG-KASFATVQDGSG 114
Query: 120 KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHM 179
+IQ E + K GDI+ G +T KGELS+ +L LL+ L
Sbjct: 115 QIQFFVT-PADVGAETYD-AFKKWDLGDIVAARGVLFRTNKGELSVKCTQLRLLAKALRP 172
Query: 180 LPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMN 239
LP G+ D+ETR+RQRY+DL++ R F R + IA +R+++ F+EVETPM++
Sbjct: 173 LPDKFHGLADQETRYRQRYVDLIVTPETRTTFRARTKAIASIRKFMGDADFMEVETPMLH 232
Query: 240 MIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHN 299
I GGA AKPFVTHHN L+M++++RIAPELYLK L+VGG +RV+E+ R FRNEG+ HN
Sbjct: 233 PIPGGAAAKPFVTHHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVSPRHN 292
Query: 300 PEFTTCEFYMAYADYNDLMHLTEDLIS 326
PEFT EFY AY DY LM TE LI
Sbjct: 293 PEFTMMEFYAAYTDYRWLMDFTERLIR 319
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Length = 529 | Back alignment and structure |
|---|
Score = 222 bits (567), Expect = 9e-66
Identities = 66/139 (47%), Positives = 90/139 (64%)
Query: 348 EEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETR 407
E K GDI+ G +T KGELS+ +L LL+ L LP G+ D+ETR
Sbjct: 127 AETYDAFKKWDLGDIVAARGVLFRTNKGELSVKCTQLRLLAKALRPLPDKFHGLADQETR 186
Query: 408 FRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTH 467
+RQRY+DL++ R F R + IA +R+++ F+EVETPM++ I GGA AKPFVTH
Sbjct: 187 YRQRYVDLIVTPETRTTFRARTKAIASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVTH 246
Query: 468 HNDLNMDLYMRIAPELYLK 486
HN L+M++++RIAPELYLK
Sbjct: 247 HNALDMEMFLRIAPELYLK 265
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Length = 504 | Back alignment and structure |
|---|
Score = 384 bits (988), Expect = e-128
Identities = 129/287 (44%), Positives = 186/287 (64%), Gaps = 4/287 (1%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLE-NVTLSVAGRV 99
++ R R + +++QG +P+ F + + E++ + ++ N+ +SVAGR+
Sbjct: 15 NDELRNRREKLAALRQQGV-AFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRM 73
Query: 100 HAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK 159
R G K F L+ G +IQ+ R E + K GDIIG G+ KT+
Sbjct: 74 MTRRIMG-KASFVTLQDVGGRIQLYVA-RDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQ 131
Query: 160 KGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIA 219
GELSI +L LL+ L LP G++D+E R+RQRYLDL+ N++ R F+VR++I+A
Sbjct: 132 TGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILA 191
Query: 220 YVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL 279
+R+++ + GF+EVETPMM +I GGA+A+PF+THHN L++D+Y+RIAPELYLK LVVGG
Sbjct: 192 AIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGF 251
Query: 280 DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
+RV+E+ R FRNEGI + HNPEFT E YMAYADY+DL+ LTE L
Sbjct: 252 ERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFR 298
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Length = 504 | Back alignment and structure |
|---|
Score = 223 bits (570), Expect = 2e-66
Identities = 72/140 (51%), Positives = 102/140 (72%)
Query: 347 EEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKET 406
E + K GDIIG G+ KT+ GELSI +L LL+ L LP G++D+E
Sbjct: 105 EGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEV 164
Query: 407 RFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVT 466
R+RQRYLDL+ N++ R F+VR++I+A +R+++ + GF+EVETPMM +I GGA+A+PF+T
Sbjct: 165 RYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFIT 224
Query: 467 HHNDLNMDLYMRIAPELYLK 486
HHN L++D+Y+RIAPELYLK
Sbjct: 225 HHNALDLDMYLRIAPELYLK 244
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Length = 345 | Back alignment and structure |
|---|
Score = 223 bits (572), Expect = 2e-68
Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 208 RHKFIVRAQIIAYVRRYLDSLGFLEVETPMMN-MIAGGATAKPFVTHH----NDLNMDLY 262
+ RA I+A +RR+ G LEVETP M+ PF T + M+L+
Sbjct: 33 IPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLW 92
Query: 263 MRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTE 322
+ +PE ++K L+V G V+++ R FRNE + HNPEFT E+Y + D LM+ +
Sbjct: 93 LMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVD 152
Query: 323 DLIS 326
DL+
Sbjct: 153 DLLQ 156
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Length = 345 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 2e-29
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 422 RHKFIVRAQIIAYVRRYLDSLGFLEVETPMMN-MIAGGATAKPFVTHH----NDLNMDLY 476
+ RA I+A +RR+ G LEVETP M+ PF T + M+L+
Sbjct: 33 IPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLW 92
Query: 477 MRIAPELYLK 486
+ +PE ++K
Sbjct: 93 LMTSPEYHMK 102
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Length = 487 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 8e-29
Identities = 65/284 (22%), Positives = 106/284 (37%), Gaps = 50/284 (17%)
Query: 78 KYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLR-GEGLKIQVMANARMYQS-EEE 135
K+ DL +A+ + + RVH R+ G L F LR L IQ + A + +
Sbjct: 25 KFVDLDEAK-DSDKEVLFRARVHNTRQQGATLAFLTLRQQASL-IQGLVKANKEGTISKN 82
Query: 136 FASDLVKIKRGDIIGVTG-------SPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVK 188
+ I+ V G L I K+ +S LP ++
Sbjct: 83 MVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALP---ILLE 139
Query: 189 DK-----------------ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFL 231
D +TR R +DL + F ++A + R YL + F
Sbjct: 140 DASRSEAEAEAAGLPVVNLDTRLDYRVIDLR-TVTNQAIFRIQAGVCELFREYLATKKFT 198
Query: 232 EVETPMMNMIA--GGATAKPFVTHHNDLNMDLYMRIA-----PELYLKMLVVGGLDRVYE 284
EV TP + GG++ F + + A P+ + L+V +RVYE
Sbjct: 199 EVHTPKLLGAPSEGGSSV--F-------EVTYFKGKAYLAQSPQFNKQQLIVADFERVYE 249
Query: 285 VGRQFRNEGIDLT-HNPEFTTCEFYMAYAD-YNDLMHLTEDLIS 326
+G FR E + H EFT + MA+ + Y++++ +L
Sbjct: 250 IGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFV 293
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Length = 487 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 30/151 (19%)
Query: 336 CVMANARMYQSEEEFASDLVKIKRGDIIGVTG-------SPGKTKKGELSIIPKKLTLLS 388
++ + + + I+ V G L I K+ +S
Sbjct: 69 GLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTIS 128
Query: 389 PCLHMLPHMHFGVKDK-----------------ETRFRQRYLDLMINERIRHKFIVRAQI 431
LP ++D +TR R +DL + F ++A +
Sbjct: 129 ETPEALP---ILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLR-TVTNQAIFRIQAGV 184
Query: 432 IAYVRRYLDSLGFLEVETPMMNMIA--GGAT 460
R YL + F EV TP + GG++
Sbjct: 185 CELFREYLATKKFTEVHTPKLLGAPSEGGSS 215
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Length = 429 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 1e-28
Identities = 71/263 (26%), Positives = 116/263 (44%), Gaps = 39/263 (14%)
Query: 80 SDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLR-GEGLKIQVMANARMYQSEEEFAS 138
+D+ + V AG VH +R+ G F LR GL QV+ +
Sbjct: 8 ADVTPEYDGKEVI--WAGWVHLLRDLG-GKKFIILRDKTGL-GQVVVDK-----NSSAFG 58
Query: 139 DLVKIKRGDIIGVTG--SPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK-----E 191
++ + +I V G K + + +++TLLS LP V K +
Sbjct: 59 ISQELTQESVIQVRGIVKADKRAPRGIELHAEEITLLSKAKAPLP---LDVSGKVKADID 115
Query: 192 TRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKP 249
TR R+R LDL + ++ +++ + R L GF+E+ TP + A GGA
Sbjct: 116 TRLRERVLDLR-RQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQL-- 172
Query: 250 FVTHHNDLNMDLYMRIA-----PELYLKMLVVGGLDRVYEVGRQFRNEGIDLT-HNPEFT 303
F + + + A P+LY +++ G ++RV+EV +R E D H EF
Sbjct: 173 F-------PVIYFGKEAFLAQSPQLYKELM-AGVVERVFEVAPAWRAEESDTPFHLAEFI 224
Query: 304 TCEFYMAYADYNDLMHLTEDLIS 326
+ + MA+ADYND+M L E ++
Sbjct: 225 SMDVEMAFADYNDVMQLLEKILH 247
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Length = 429 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 7e-10
Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 13/126 (10%)
Query: 344 YQSEEEFASDLVKIKRGDIIGVTG--SPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGV 401
++ + +I V G K + + +++TLLS LP V
Sbjct: 50 VDKNSSAFGISQELTQESVIQVRGIVKADKRAPRGIELHAEEITLLSKAKAPLP---LDV 106
Query: 402 KDK-----ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456
K +TR R+R LDL + ++ +++ + R L GF+E+ TP + A
Sbjct: 107 SGKVKADIDTRLRERVLDLR-RQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASA 165
Query: 457 --GGAT 460
GGA
Sbjct: 166 TEGGAQ 171
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 3e-28
Identities = 66/263 (25%), Positives = 117/263 (44%), Gaps = 34/263 (12%)
Query: 80 SDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASD 139
S++ + + V VAG V +++ G + F +R +Q+ A + + + E
Sbjct: 8 SEITEELNGQKVK--VAGWVWEVKDLG-GIKFLWIRDRDGIVQITAPKK--KVDPELFKL 62
Query: 140 LVKIKRGDIIGVTGSPGKT--KKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK-----ET 192
+ K++ D++ V G T K I+P+K+ +L+ LP K +T
Sbjct: 63 IPKLRSEDVVAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLP---LDPTGKVKAELDT 119
Query: 193 RFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGA--TAKPF 250
R R++DL + F +R+ + VR + GF+E+ TP +IA + F
Sbjct: 120 RLDNRFMDLR-RPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPK--IIATATEGGTELF 176
Query: 251 VTHHNDLNMDLYMRIA-----PELYLKMLVVGGLDRVYEVGRQFRNEGIDLT-HNPEFTT 304
M + A P+LY ++++ GLDRVYE+ FR E + T H E +
Sbjct: 177 -------PMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWS 229
Query: 305 CEFYMAY-ADYNDLMHLTEDLIS 326
+ MA+ D ++M E L++
Sbjct: 230 IDSEMAFIEDEEEVMSFLERLVA 252
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 7e-10
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 347 EEEFASDLVKIKRGDIIGVTGSPGKT--KKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK 404
+ E + K++ D++ V G T K I+P+K+ +L+ LP K
Sbjct: 56 DPELFKLIPKLRSEDVVAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLP---LDPTGK 112
Query: 405 -----ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGA 459
+TR R++DL + F +R+ + VR + GF+E+ TP I A
Sbjct: 113 VKAELDTRLDNRFMDLR-RPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTP---KIIATA 168
Query: 460 T 460
T
Sbjct: 169 T 169
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Length = 422 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 2e-24
Identities = 68/264 (25%), Positives = 109/264 (41%), Gaps = 43/264 (16%)
Query: 78 KYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLR-GEGLKIQVMANARMYQSEEEF 136
DL + + G +H R+ G ++ F LR G+ +QV+
Sbjct: 4 LVRDLKA---HVGQEVELLGFLHWRRDLG-RIQFLLLRDRSGV-VQVVT----------- 47
Query: 137 ASDLVKIKRGDIIGVTG--SPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK---E 191
L + V G G L + K++ +LSP L P + + +
Sbjct: 48 -GGLKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPD 106
Query: 192 TRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKP 249
T RY+ L E+ R V+A ++ RRYLD F E+ TP + GG+
Sbjct: 107 TLLEYRYVTLR-GEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGL-- 163
Query: 250 FVTHHNDLNMDLYMRIA-----PELYLKMLVVGGLDRVYEVGRQFRNEGIDLT-HNPEFT 303
F +D + + A P+LY +++ VG +RVYEV +R E + H E+
Sbjct: 164 F-------GVDYFEKRAYLAQSPQLYKQIM-VGVFERVYEVAPVWRMEEHHTSRHLNEYL 215
Query: 304 TCEFYMAY-ADYNDLMHLTEDLIS 326
+ + M + AD DLM L E L++
Sbjct: 216 SLDVEMGFIADEEDLMRLEEALLA 239
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Length = 422 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 8/117 (6%)
Query: 351 ASDLVKIKRGDIIGVTG--SPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK---E 405
L + V G G L + K++ +LSP L P + + +
Sbjct: 47 TGGLKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPD 106
Query: 406 TRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGAT 460
T RY+ L E+ R V+A ++ RRYLD F E+ TP + GG+
Sbjct: 107 TLLEYRYVTLR-GEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSG 162
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Length = 434 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 2e-20
Identities = 58/262 (22%), Positives = 101/262 (38%), Gaps = 36/262 (13%)
Query: 80 SDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLR-GEGLKIQVMANARMYQSEEEFAS 138
++ + V +AG V+ G K +F +R G+ +Q + + EE
Sbjct: 8 QEVKPELDGKKVR--LAGWVYTNMRVG-KKIFLWIRDSTGI-VQAVVAKNV--VGEETFE 61
Query: 139 DLVKIKRGDIIGVTGS--PGKTKKGELSIIPKKLTLLSPC----LHMLPHMHFGVKDKET 192
K+ R + V G + G + +KL ++ + P E
Sbjct: 62 KAKKLGRESSVIVEGIVKADERAPGGAEVHVEKLEVIQAVSEFPIPENPEQA----SPEL 117
Query: 193 RFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKPF 250
R+L + + V+ +I R +L G+ EV P++ A GGAT F
Sbjct: 118 LLDYRHLHIR-TPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATL--F 174
Query: 251 VTHHNDLNMDLYMRIA-----PELYLKMLVVGGLDRVYEVGRQFRNEGIDLT-HNPEFTT 304
+ + + A +LYL+ + GL++V+ + FR E H EF
Sbjct: 175 -------KLKYFDKYAYLSQSAQLYLEAAI-FGLEKVWSLTPSFRAEKSRTRRHLTEFWH 226
Query: 305 CEFYMAYADYNDLMHLTEDLIS 326
E A+ D D+M + E+L+S
Sbjct: 227 LELEAAWMDLWDIMKVEEELVS 248
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Length = 434 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 11/111 (9%)
Query: 348 EEFASDLVKIKRGDIIGVTGS--PGKTKKGELSIIPKKLTLLSPC----LHMLPHMHFGV 401
EE K+ R + V G + G + +KL ++ + P
Sbjct: 57 EETFEKAKKLGRESSVIVEGIVKADERAPGGAEVHVEKLEVIQAVSEFPIPENPEQA--- 113
Query: 402 KDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMM 452
E R+L + + V+ +I R +L G+ EV P++
Sbjct: 114 -SPELLLDYRHLHIR-TPKASAIMKVKETLIMAAREWLLKDGWHEVFPPIL 162
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 | Back alignment and structure |
|---|
Score = 92.9 bits (232), Expect = 4e-20
Identities = 70/273 (25%), Positives = 123/273 (45%), Gaps = 51/273 (18%)
Query: 81 DLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLR-GEGLKIQVMANARMYQSEEEFASD 139
L + V E V L G V+ R+ G L+F DLR EGL +Q++A+ +
Sbjct: 9 SLRETHVGEEVVL--EGWVNRRRDLG-GLIFLDLRDREGL-VQLVAH-----PASPAYAT 59
Query: 140 LVKIKRGDIIGVTGS----PGKTKK---GELSIIPKKLTLLSPC------LHMLPHMHFG 186
+++ ++ G P + G + + L +L+ +
Sbjct: 60 AERVRPEWVVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEE 119
Query: 187 VK-DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGA 245
+ +E R + RYLDL R++ +R ++I + +LD GF++VETP + +
Sbjct: 120 KEASEELRLKYRYLDLR-RRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFL----TKS 174
Query: 246 T---AKPFV----THHNDLNMDLYMRIA----PELYLKMLVVGGLDRVYEVGRQFRNEGI 294
T A+ F+ Y A P+L+ +ML+V GLDR +++ R FR+E
Sbjct: 175 TPEGARDFLVPYRHEPG----LFY---ALPQSPQLFKQMLMVAGLDRYFQIARCFRDE-- 225
Query: 295 DLTHN--PEFTTCEFYMAYADYNDLMHLTEDLI 325
DL + P+FT + M++ + D++ L E L+
Sbjct: 226 DLRADRQPDFTQLDLEMSFVEVEDVLELNERLM 258
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 | Back alignment and structure |
|---|
Score = 64.8 bits (159), Expect = 3e-11
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 375 GELSIIPKKLTLLSPC------LHMLPHMHFGVK-DKETRFRQRYLDLMINERIRHKFIV 427
G + + L +L+ + + +E R + RYLDL R++ +
Sbjct: 88 GRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLR-RRRMQENLRL 146
Query: 428 RAQIIAYVRRYLDSLGFLEVETPMM 452
R ++I + +LD GF++VETP +
Sbjct: 147 RHRVIKAIWDFLDREGFVQVETPFL 171
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Length = 585 | Back alignment and structure |
|---|
Score = 92.5 bits (231), Expect = 6e-20
Identities = 77/275 (28%), Positives = 126/275 (45%), Gaps = 60/275 (21%)
Query: 81 DLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLR-GEGLKIQVMANARMYQSEEEF--A 137
L + V + VTL G V+ R+ G L+F D+R EG+ +QV + + A
Sbjct: 8 QLRLSHVGQQVTL--CGWVNRRRDLG-SLIFIDMRDREGI-VQVFFDP---DRADALKLA 60
Query: 138 SDLVKIKRGDIIGVTGS----PGKT-----KKGELSIIPKKLTLLSPCLHMLPHMHFGVK 188
S+L + I VTG+ K GE+ ++ LT+++ +LP
Sbjct: 61 SEL---RNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRAD-VLP---LDSN 113
Query: 189 DK---ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGA 245
E R + RYLDL + + RA+I + VRR++D GFL++ETPM+ A
Sbjct: 114 HVNTEEARLKYRYLDLR-RPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPML----TKA 168
Query: 246 T---AKPFV----THHNDLNMDLYMRIA----PELYLKMLVVGGLDRVYEVGRQFRNEGI 294
T A+ ++ H Y A P+L+ ++L++ G DR Y++ + FR+E
Sbjct: 169 TPEGARDYLVPSRVHKG----KFY---ALPQSPQLFKQLLMMSGFDRYYQIVKCFRDE-- 219
Query: 295 DLTHN--PEFTT--CEFYMAYADYNDLMHLTEDLI 325
DL + PEFT E ++ + + E L+
Sbjct: 220 DLRADRQPEFTQIDVE--TSFMTAPQVREVMEALV 252
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Length = 585 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 1e-11
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 375 GELSIIPKKLTLLSPCLHMLPHMHFGVKDK---ETRFRQRYLDLMINERIRHKFIVRAQI 431
GE+ ++ LT+++ +LP E R + RYLDL + + RA+I
Sbjct: 90 GEIEVLASSLTIINRAD-VLP---LDSNHVNTEEARLKYRYLDLR-RPEMAQRLKTRAKI 144
Query: 432 IAYVRRYLDSLGFLEVETPMM 452
+ VRR++D GFL++ETPM+
Sbjct: 145 TSLVRRFMDDHGFLDIETPML 165
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Length = 435 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 3e-19
Identities = 52/290 (17%), Positives = 104/290 (35%), Gaps = 35/290 (12%)
Query: 84 DAQVLENVTLSVAGRVHAIRESGTKLMFYDLR-GEGLKIQVMANARMYQSEEEFASDLVK 142
D N + + G +H +R G LMF+ LR G G +QV+ ++ Q+ D +
Sbjct: 5 DLVKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF-LQVLLMDKLCQTY-----DALT 58
Query: 143 IKRGDIIGVTG----SP-GKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKD--KETRFR 195
+ + + G P GK +I ++ + ++ +
Sbjct: 59 VNTECTVEIYGAIKEVPEGKEAPNGHELIADFWKIIGNA-PPGGIDNVLNEEASVDKMLD 117
Query: 196 QRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHN 255
R+L + +RA +R + + G++EV P + + F
Sbjct: 118 NRHLVIRGE-NAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLF----- 171
Query: 256 DLNMDLYMRIA-----PELYLKMLVVGGLDRVYEVGRQFRNEGIDLT-HNPEFTTCEFYM 309
N+D + + +LYL+ + L V+ + + +R E H E+ E
Sbjct: 172 --NLDYFGEQSFLTQSSQLYLETCI-PTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAEC 228
Query: 310 AYADYNDLMHLTEDLISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKR 359
+ +DLM E+L+ + ++A+ + E +R
Sbjct: 229 PFITLDDLMEKIEELVCDTVDR-----LLADEEAKKLLEHINPKFQPPER 273
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Length = 456 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 1e-18
Identities = 48/260 (18%), Positives = 100/260 (38%), Gaps = 31/260 (11%)
Query: 84 DAQVLENVTLSVAGRVHAIRESGTKLMFYDLR-GEGLKIQVMANARMYQSEEEFASDLVK 142
DA LE ++ G + IR++ L+F +LR G G Q + E +
Sbjct: 24 DAAGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGY-CQCVIFG----KELCEPEKVKL 78
Query: 143 IKRGDIIGVTG----SPGKTKKGELS------IIPKKLTLLSPCLHMLPHMHFGVKDKET 192
+ R + +TG GK E++ + + ++ L ++
Sbjct: 79 LTRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQ 138
Query: 193 RFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVT 252
+ + R++ + +E + +R++I Y R+Y F E++ P + + F
Sbjct: 139 KMQNRHIVIR-SEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLF-- 195
Query: 253 HHNDLNMDLYMRIA-----PELYLKMLVVGGLDRVYEVGRQFRNEGIDLT-HNPEFTTCE 306
+ + A +LYL+ ++ L + + + +R E H E+ E
Sbjct: 196 -----KLQYFNEPAYLTQSSQLYLESVI-ASLGKSFCMLSSYRAEQSRTVRHLAEYLHLE 249
Query: 307 FYMAYADYNDLMHLTEDLIS 326
+ + + DL++ EDL+
Sbjct: 250 AELPFISFEDLLNHLEDLVC 269
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 7e-16
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 19/145 (13%)
Query: 191 ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAK 248
+TR R LDL F +++ R +L S F+E+ TP + + GG+
Sbjct: 225 DTRLDNRMLDLR-TVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNI- 282
Query: 249 PFVTHHNDLNMDLYMRIA-----PELYLKMLVVGGLDRVYEVGRQFRNEGIDLT-HNPEF 302
F + + R A P+LY +M ++G +V+EVG FR E + H EF
Sbjct: 283 -F-------EVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEF 334
Query: 303 TTCEFYMAYAD-YNDLMHLTEDLIS 326
+ M + Y++ + + E L +
Sbjct: 335 EGLDIEMEIVENYHECIDVMEKLFT 359
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 4/131 (3%)
Query: 322 EDLISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIP 381
+ + P + + S + + + I +L+ P
Sbjct: 145 TSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGK---DLTKRP 201
Query: 382 KKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDS 441
K + ++TR R LDL F +++ R +L S
Sbjct: 202 LKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLR-TVTNIAIFRIQSACCGLFREFLTS 260
Query: 442 LGFLEVETPMM 452
F+E+ TP +
Sbjct: 261 QKFVEIHTPKL 271
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Length = 294 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 1e-13
Identities = 21/138 (15%), Positives = 54/138 (39%), Gaps = 9/138 (6%)
Query: 197 RYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPM----MNMIAGGATAKPFVT 252
++++ I ++ +I+ Y+ + GF + + + + +
Sbjct: 2 NAVEIISR-EISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEP 60
Query: 253 HHNDL-NMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLT---HNPEFTTCEFY 308
++ + + + + L+ ++ + GL +++ + R E H EFT +F
Sbjct: 61 AEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFE 120
Query: 309 MAYADYNDLMHLTEDLIS 326
+ A D+M L E L+
Sbjct: 121 VERAKMEDIMRLIERLVY 138
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 7e-09
Identities = 57/435 (13%), Positives = 126/435 (28%), Gaps = 119/435 (27%)
Query: 28 THLNTNYTQQCLTSEFFRLRSAAVEQ-----MKEQGPHPYPHKFTV------TSSLEDFI 76
++ N+T + S +LR +++ +K PY + V + F
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS---KPYENCLLVLLNVQNAKAWNAF- 262
Query: 77 EKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEF 136
+L ++L +T + + T + D L + +
Sbjct: 263 ----NL-SCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--------EVKSLL 307
Query: 137 ASDLVKIKRGDI--IGVTGSP------GKTKKGELSII--------PKKLTLLSPCLHML 180
+ + D+ +T +P ++ + L+ K T++ L++L
Sbjct: 308 LK-YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 181 PHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSL-GFLEVETPM-- 237
+ +R+ + L + F A I + L + + M
Sbjct: 367 ---------EPAEYRKMFDRLSV-------FPPSAHIPTIL---LSLIWFDVIKSDVMVV 407
Query: 238 MN------MIAGGATAKPFVTHHNDLNMDLYMRIAPELYL-KMLVVGGLDRVYEVGRQFR 290
+N ++ K + ++L +++ E L + +V D Y + + F
Sbjct: 408 VNKLHKYSLVEKQ--PKESTISIPSIYLELKVKLENEYALHRSIV----DH-YNIPKTFD 460
Query: 291 NEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDRNRPCVMANARMYQSEEEF 350
++ DL ++ + H + N + F
Sbjct: 461 SD--DLIPPYLDQYFYSHIGH-------H------------------LKNIEHPERMTLF 493
Query: 351 AS---DL----VKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPH--MHFGV 401
D KI+ +L + P L + + F
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 402 KDKETRFRQRYLDLM 416
K +E +Y DL+
Sbjct: 554 KIEENLICSKYTDLL 568
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 2e-05
Identities = 77/564 (13%), Positives = 158/564 (28%), Gaps = 169/564 (29%)
Query: 4 ERIRHLPNLSGAENSQQHTTAQTV-THLNTNYTQQCLTSEFFRLRSAAVEQMKEQGPHPY 62
L + Q+ + V L NY +F + +K + P
Sbjct: 62 SGTLRL--FWTLLSKQEEMVQKFVEEVLRINY-------KFL------MSPIKTEQRQP- 105
Query: 63 PHKFTVTSSLEDFIEKYSDLP-DAQVLENVTLSVAGRVHAIRE------SGTKLMFYDLR 115
+ +IE+ L D QV +S +R+ ++ +
Sbjct: 106 ------SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 116 GEGLKIQVMAN--ARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLL 173
G G K +A Y+ + + I + + + L ++ K L +
Sbjct: 160 GSG-K-TWVALDVCLSYKVQCKMD--------FKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 174 SPCLHMLPHMHFG-------VKDKETRF--RQRYLD-LMI-----NERIRHKFIVRAQII 218
P ++ + R + Y + L++ N + + F + +I+
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 219 AYVR--RYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIA-------PEL 269
R + D L ++ + T D L ++ P
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTP--------DEVKSLLLKYLDCRPQDLPRE 321
Query: 270 YLKM--LVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
L + + R+ T + + + + + L + E ++
Sbjct: 322 VLTTNPRRLSI------IAESIRDG---------LATWDNW-KHVNCDKLTTIIESSLNV 365
Query: 328 ------RK---------EDRNRP----CVMANARMYQSEEEFASDLVK---IKRGDIIGV 365
RK + P ++ + + L K +++
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 366 TGSPG-----KTK---KGEL--SII-----PKKL---TLLSPCL------HMLPHM-HFG 400
P K K + L SI+ PK L+ P L H+ H+ +
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 401 VKDKETRFRQRYLDL-MINERIRH----------------------KFIVRAQIIAYVRR 437
++ T FR +LD + ++IRH +I Y R
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD-NDPKYERL 544
Query: 438 YLDSLGFLE------VETPMMNMI 455
L FL + + +++
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLL 568
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 4e-05
Identities = 77/559 (13%), Positives = 158/559 (28%), Gaps = 199/559 (35%)
Query: 56 EQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGR--VHAI-----RESGTK 108
E G H Y +K ++ + F++ + D + ++++ S+ + + I SGT
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVD---NF-DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 109 LMFYDLR-----------GEGL---------KIQVMANA-------------RMYQSEEE 135
+F+ L E L I+ R+Y +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 136 FASD--------------LVKIKRGDII---GVTGSPGKT-------------------- 158
FA L++++ + GV GS GKT
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS-GKTWVALDVCLSYKVQCKMDFKI 184
Query: 159 ---------KKGELSIIPKKL-TLLSPCLHMLPHMHFG-------VKDKETRF--RQRYL 199
+ + +KL + P ++ + R + Y
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 200 D-LMI-----NERIRHKFIVRAQIIAYVR--RYLDSLGFLEVETPMMNMIAGGATAKPFV 251
+ L++ N + + F + +I+ R + D L ++ + T
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP---- 300
Query: 252 THHNDLNMDLYMRIA-------PELYLKM--LVVGGLDRVYEVGRQFRNEGIDLTHNPEF 302
D L ++ P L + + R+
Sbjct: 301 ----DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI------IAESIRD---------GL 341
Query: 303 TTCEFYMAYADYNDLMHLTEDLISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDI 362
T + + + + + L + E ++ + R +M+ F I
Sbjct: 342 ATWDNW-KHVNCDKLTTIIESSLNVLEPAEYR-------KMFDRLSVFPPS-AHI----- 387
Query: 363 IGVTGSPGKT--------KKGELSIIPKKLTLLSPCLHMLPHMHFGVKD-KETRFR--QR 411
P K ++ ++ KL S ++ K KE+
Sbjct: 388 ------PTILLSLIWFDVIKSDVMVVVNKLHKYS----LV------EKQPKESTISIPSI 431
Query: 412 YLDLMI---NERIRHKFIVRAQIIAY-VRRYLDSLGFLEVETPMMNMIAGGATAKPFVTH 467
YL+L + NE H+ IV Y + + DS + + + H
Sbjct: 432 YLELKVKLENEYALHRSIVD----HYNIPKTFDSDDLI--PPYLDQYFYS------HIGH 479
Query: 468 H-NDLNMDLYMRIAPELYL 485
H ++ M + ++L
Sbjct: 480 HLKNIEHPERMTLFRMVFL 498
|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* Length = 290 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 6e-07
Identities = 24/153 (15%), Positives = 55/153 (35%), Gaps = 20/153 (13%)
Query: 187 VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA---- 242
++ + R++ L + E + ++ + R+ GFLE+++P++ +
Sbjct: 55 LESELLSRRKKDLQQIYAEEREN---YLGKLEREITRFFVDRGFLEIKSPILIPLEYIER 111
Query: 243 -GGATAKPFVTHHNDLNMDLYMRIAPE--------LYLKMLVVGGLDRVYEVGRQFRNEG 293
G ++ + +R P L + +++E+G +R E
Sbjct: 112 MGIDNDTELSKQIFRVDKNFCLR--PMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKES 169
Query: 294 IDLTHNPEFTTCEFYMAYADYN--DLMHLTEDL 324
H EFT F+ + +L + D
Sbjct: 170 DGKEHLEEFTMLVFWQMGSGCTRENLESIITDF 202
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 553 | |||
| 3bju_A | 521 | Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 4ex5_A | 529 | Lysine--tRNA ligase; structural genomics, niaid, n | 100.0 | |
| 1e1o_A | 504 | Lysyl-tRNA synthetase, heat inducible; ligase, ami | 100.0 | |
| 3a74_A | 493 | Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, | 100.0 | |
| 1c0a_A | 585 | Aspartyl tRNA synthetase; protein-RNA complex, lig | 100.0 | |
| 3nem_A | 438 | Aspartyl-tRNA synthetase; rossmann fold, OB fold, | 100.0 | |
| 1l0w_A | 580 | Aspartyl-tRNA synthetase; space-grown crystal, dim | 100.0 | |
| 3i7f_A | 548 | Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi | 100.0 | |
| 3m4p_A | 456 | Ehasnrs, asparaginyl-tRNA synthetase, putative; am | 100.0 | |
| 2xgt_A | 435 | Asparaginyl-tRNA synthetase, cytoplasmic; ligase, | 100.0 | |
| 1eov_A | 487 | ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy | 100.0 | |
| 1wyd_A | 429 | Hypothetical aspartyl-tRNA synthetase; archaea, LI | 100.0 | |
| 4ah6_A | 617 | Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo | 100.0 | |
| 1x54_A | 434 | Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe | 100.0 | |
| 1n9w_A | 422 | Aspartyl-tRNA synthetase 2; biosynthetic protein; | 100.0 | |
| 3a5y_A | 345 | GENX, putative lysyl-tRNA synthetase; aminoacyl-tR | 100.0 | |
| 3nem_A | 438 | Aspartyl-tRNA synthetase; rossmann fold, OB fold, | 100.0 | |
| 4ex5_A | 529 | Lysine--tRNA ligase; structural genomics, niaid, n | 99.98 | |
| 3bju_A | 521 | Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 99.98 | |
| 1l0w_A | 580 | Aspartyl-tRNA synthetase; space-grown crystal, dim | 99.97 | |
| 3i7f_A | 548 | Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi | 99.97 | |
| 1c0a_A | 585 | Aspartyl tRNA synthetase; protein-RNA complex, lig | 99.97 | |
| 3m4p_A | 456 | Ehasnrs, asparaginyl-tRNA synthetase, putative; am | 99.97 | |
| 4ah6_A | 617 | Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo | 99.97 | |
| 1e1o_A | 504 | Lysyl-tRNA synthetase, heat inducible; ligase, ami | 99.97 | |
| 1nnh_A | 294 | Asparaginyl-tRNA synthetase-related peptide; struc | 99.97 | |
| 1wyd_A | 429 | Hypothetical aspartyl-tRNA synthetase; archaea, LI | 99.97 | |
| 3a74_A | 493 | Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, | 99.96 | |
| 1eov_A | 487 | ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy | 99.96 | |
| 1x54_A | 434 | Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe | 99.96 | |
| 2xgt_A | 435 | Asparaginyl-tRNA synthetase, cytoplasmic; ligase, | 99.96 | |
| 1n9w_A | 422 | Aspartyl-tRNA synthetase 2; biosynthetic protein; | 99.95 | |
| 3qtc_A | 290 | Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet | 99.85 | |
| 3a5y_A | 345 | GENX, putative lysyl-tRNA synthetase; aminoacyl-tR | 99.79 | |
| 1nnh_A | 294 | Asparaginyl-tRNA synthetase-related peptide; struc | 99.58 | |
| 2rhq_A | 294 | Phenylalanyl-tRNA synthetase alpha chain; heterote | 99.2 | |
| 1b7y_A | 350 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 99.07 | |
| 3qtc_A | 290 | Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet | 98.99 | |
| 3dsq_A | 288 | Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t | 98.93 | |
| 1z7m_A | 344 | ATP phosphoribosyltransferase regulatory subunit; | 98.67 | |
| 3od1_A | 400 | ATP phosphoribosyltransferase regulatory subunit; | 98.58 | |
| 3lc0_A | 456 | Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t | 98.52 | |
| 3net_A | 465 | Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas | 98.49 | |
| 1wu7_A | 434 | Histidyl-tRNA synthetase; ligase, structural genom | 98.49 | |
| 1qe0_A | 420 | Histidyl-tRNA synthetase; class II tRNA synthetase | 98.48 | |
| 1evl_A | 401 | Threonyl-tRNA synthetase; amino acid recognition, | 98.48 | |
| 4e51_A | 467 | Histidine--tRNA ligase; seattle structural genomic | 98.48 | |
| 3rac_A | 373 | Histidine-tRNA ligase; structural genomics, PSI-bi | 98.46 | |
| 2i4l_A | 458 | Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud | 98.45 | |
| 1h4v_B | 421 | Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA | 98.4 | |
| 3pco_A | 327 | Phenylalanyl-tRNA synthetase, alpha subunit; amino | 98.36 | |
| 4g85_A | 517 | Histidine-tRNA ligase, cytoplasmic; synthetase; 3. | 98.35 | |
| 1htt_A | 423 | Histidyl-tRNA synthetase; complex (tRNA synthetase | 98.35 | |
| 4g84_A | 464 | Histidine--tRNA ligase, cytoplasmic; synthetase; 2 | 98.32 | |
| 2dq3_A | 425 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 98.22 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 98.21 | |
| 3l4g_A | 508 | Phenylalanyl-tRNA synthetase alpha chain; aminoacy | 98.21 | |
| 1hc7_A | 477 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 98.19 | |
| 3a32_A | 471 | Probable threonyl-tRNA synthetase 1; aeropyrum per | 98.17 | |
| 1nj8_A | 459 | Proline-tRNA synthetase, proline--tRNA ligase; cla | 98.16 | |
| 2j3l_A | 572 | Prolyl-tRNA synthetase; class II aminoacyl- T synt | 98.16 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 98.15 | |
| 3uh0_A | 460 | Threonyl-tRNA synthetase, mitochondrial; threonine | 98.06 | |
| 1nj1_A | 501 | PROR, proline-tRNA synthetase, proline--tRNA ligas | 98.0 | |
| 4hvc_A | 519 | Bifunctional glutamate/proline--tRNA ligase; ligas | 97.98 | |
| 3ial_A | 518 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.98 | |
| 2dq0_A | 455 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 97.98 | |
| 1ses_A | 421 | Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A | 97.95 | |
| 1wle_A | 501 | Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo | 97.91 | |
| 12as_A | 330 | Asparagine synthetase; ligase, nitrogen fixation; | 97.9 | |
| 1usy_A | 275 | ATP phosphoribosyltransferase regulatory subunit; | 97.89 | |
| 3vbb_A | 522 | Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l | 97.78 | |
| 3qne_A | 485 | Seryl-tRNA synthetase, cytoplasmic; amino acid bio | 97.71 | |
| 3lss_A | 484 | Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.69 | |
| 3err_A | 536 | Fusion protein of microtubule binding domain from | 97.68 | |
| 1ati_A | 505 | Glycyl-tRNA synthetase; protein biosynthesis, liga | 97.61 | |
| 2cja_A | 522 | Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE | 97.57 | |
| 2du3_A | 534 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 97.37 | |
| 2du7_A | 549 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 97.29 | |
| 3cmq_A | 415 | Phenylalanyl-tRNA synthetase, mitochondrial; class | 97.24 | |
| 2odr_B | 648 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 97.22 | |
| 2odr_A | 665 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 97.2 | |
| 2odr_D | 685 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 97.19 | |
| 2odr_C | 701 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 97.17 | |
| 2k50_A | 115 | Replication factor A related protein; uncharacteri | 97.03 | |
| 2zt5_A | 693 | Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP | 96.96 | |
| 3mf2_A | 346 | BLL0957 protein; aminoacyl-tRNA synthetase, seryl- | 96.81 | |
| 1g5h_A | 454 | Mitochondrial DNA polymerase accessory subunit; in | 96.63 | |
| 3kf6_A | 159 | Protein STN1; OB fold, chromosomal protein, DNA-bi | 96.46 | |
| 3ikl_A | 459 | DNA polymerase subunit gamma-2, mitochondrial; tra | 96.42 | |
| 4gop_B | 136 | Putative uncharacterized protein; OB fold, ssDNA b | 96.27 | |
| 3dm3_A | 105 | Replication factor A; probably plays AN essential | 96.11 | |
| 3kdf_D | 132 | Replication protein A 32 kDa subunit; wheat GERM c | 96.02 | |
| 3e0e_A | 97 | Replication protein A; structural genomics, PSI-2, | 95.98 | |
| 2rhq_B | 795 | Phenylalanyl-tRNA synthetase beta chain; heterotet | 95.92 | |
| 3l4g_B | 589 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl | 95.88 | |
| 3ig2_A | 213 | Phenylalanyl-tRNA synthetase beta chain; phers, MC | 95.49 | |
| 3ica_A | 213 | Phenylalanyl-tRNA synthetase beta chain; APC61692. | 95.45 | |
| 1nnx_A | 109 | Protein YGIW; structural genomics, hypothetical pr | 95.17 | |
| 3au7_A | 402 | TIAS, putative uncharacterized protein; ATP hydrol | 94.73 | |
| 2pi2_A | 270 | Replication protein A 32 kDa subunit; FULL-length | 93.22 | |
| 2hpi_A | 1220 | DNA polymerase III alpha subunit; POL-beta-like nu | 91.99 | |
| 1b7y_B | 785 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 91.48 | |
| 1ynx_A | 114 | Replication factor-A protein 1; canonical OB fold, | 91.29 | |
| 2kbn_A | 109 | Conserved protein; nucleic acid binding protein, b | 90.85 | |
| 2k75_A | 106 | Uncharacterized protein TA0387; closed beta barrel | 90.7 | |
| 1o7i_A | 119 | SSB, SSO2364, single stranded DNA binding protein; | 89.39 | |
| 3kf8_A | 220 | Protein STN1; OB fold; 2.40A {Candida tropicalis m | 89.22 | |
| 1jmc_A | 246 | Protein (replication protein A (RPA)); human ssDNA | 89.09 | |
| 3kdf_A | 121 | Replication protein A 14 kDa subunit; wheat GERM c | 86.2 | |
| 3tqy_A | 158 | Single-stranded DNA-binding protein; DNA replicati | 83.18 | |
| 3fhw_A | 115 | Primosomal replication protein N; PRIB BPR162 X-RA | 81.77 | |
| 3pco_B | 795 | Phenylalanyl-tRNA synthetase, beta chain; aminoacy | 81.15 | |
| 3vdy_A | 116 | SSB, single-stranded DNA-binding protein SSBB; OB | 80.73 |
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-76 Score=647.88 Aligned_cols=292 Identities=69% Similarity=1.179 Sum_probs=273.7
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecCCCceEEEEEEeC
Q psy11418 38 CLTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGE 117 (553)
Q Consensus 38 ~~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~ 117 (553)
.+++++.+.|++|+++|++.|++|||++|.+++++++++++|.++..++...+++|+|+|||+++|.+|+|++|++|+|+
T Consensus 3 ~~~~~~~~~r~~k~~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~ 82 (521)
T 3bju_A 3 VDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGE 82 (521)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCSSCSCCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEET
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCCCcCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEEC
Confidence 46788999999999999999999999999999999999999998877666678889999999999999988999999999
Q ss_pred CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhccc
Q psy11418 118 GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQR 197 (553)
Q Consensus 118 ~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R 197 (553)
++.||||++++...+++.|..+.+.|++||+|+|+|++.++++|++||.|++|++|++|+.|+|.+++++.++++|+++|
T Consensus 83 sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~ge~ei~~~~i~~l~~~~~~lP~~~~~~~~~e~r~r~R 162 (521)
T 3bju_A 83 GVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQR 162 (521)
T ss_dssp TEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECCCSCCCCC----CCHHHHHHCH
T ss_pred CEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecCCCCEEEEEeEEEEeecCCCCCCCccccccChhhhhhhh
Confidence 99999999887542455675556789999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHc
Q psy11418 198 YLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG 277 (553)
Q Consensus 198 ~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~ 277 (553)
|||||+|+.++++|++||+|++++|+||.++||+||+||+|++++|||+|+||.|++|+||+++||+||||||||+|+++
T Consensus 163 yLdLr~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~ 242 (521)
T 3bju_A 163 YLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVG 242 (521)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEEEETTTTEEEEECSCSHHHHHHHHHT
T ss_pred hhhHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCceeeccCCCccccceeeecccCCcceEeeCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhccc
Q psy11418 278 GLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRK 329 (553)
Q Consensus 278 g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~ 329 (553)
|++||||||||||||+++++|||||||||+|+||+|++|+|+++|+||++++
T Consensus 243 g~~rVyeig~~FR~E~~~trH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~ 294 (521)
T 3bju_A 243 GIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMV 294 (521)
T ss_dssp TCCEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHH
T ss_pred CcCceEEEEcceeCCCCCCccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999994
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-76 Score=638.82 Aligned_cols=288 Identities=41% Similarity=0.701 Sum_probs=265.3
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCccccc-CCcEEEEEEEEEeeecCCCceEEEEEEe
Q psy11418 38 CLTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVL-ENVTLSVAGRVHAIRESGTKLMFYDLRG 116 (553)
Q Consensus 38 ~~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~v~Gri~~~R~~g~kl~Fi~l~d 116 (553)
.+++++++.|++|+++|++.|+ |||++|.+++++.+++++|.++.+++.. .|++|+|+|||+++|.+| |++|++|+|
T Consensus 34 ~~~~~~~~~r~~k~~~l~~~g~-~yp~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~G-k~~Fi~LrD 111 (529)
T 4ex5_A 34 ADENQIVAERRDKLRALRDQGI-AYPNDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMG-KASFATVQD 111 (529)
T ss_dssp --CHHHHHHHHHHHHHHHHTSC-SSCCCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHcCC-CCCCCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCC-CeEEEEEEe
Confidence 5789999999999999999998 9999999999999999999887654322 378999999999999999 899999999
Q ss_pred CCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhcc
Q psy11418 117 EGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQ 196 (553)
Q Consensus 117 ~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~ 196 (553)
+++.||||++++.. +++.| +..+.|+.||+|+|+|+|.++++|++||.+++|+||++|+.|+|.++++++|+|+||++
T Consensus 112 ~sg~iQvv~~~~~~-~~~~~-~~~~~l~~gd~V~V~G~v~~t~~gelel~~~~i~vLs~a~~plP~k~~~l~d~e~r~r~ 189 (529)
T 4ex5_A 112 GSGQIQFFVTPADV-GAETY-DAFKKWDLGDIVAARGVLFRTNKGELSVKCTQLRLLAKALRPLPDKFHGLADQETRYRQ 189 (529)
T ss_dssp SSCEEEEEECHHHH-CHHHH-HHHHTCCTTCEEEEEEEEEECTTSCEEEEEEEEEEEECCSSCCCC------CTTHHHHT
T ss_pred CCeeEEEEEECCcC-CHHHH-HHHhcCCCCCEEEEEEEEEEcCCCcEEEEEEEEEEEecCCCCCCccccCCcChhhhhhh
Confidence 99999999988654 34455 56678999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHH
Q psy11418 197 RYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVV 276 (553)
Q Consensus 197 R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~ 276 (553)
||||||+|+.++++|++||+|+++||+||+++||+||+||+|++++|||+++||.|++|++|+++||+||||||||+|+|
T Consensus 190 RyLdLr~~~~~~~~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~gGA~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v 269 (529)
T 4ex5_A 190 RYVDLIVTPETRTTFRARTKAIASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVTHHNALDMEMFLRIAPELYLKRLIV 269 (529)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHH
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeeeccCCCCcccccccccccCCcceecccCHHHHHHHHHh
Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhccc
Q psy11418 277 GGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRK 329 (553)
Q Consensus 277 ~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~ 329 (553)
+|++||||||||||||+++++|||||||||||++|+|++|+|+++|+||++++
T Consensus 270 ~G~~rVyeIg~~FR~E~~~~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~ 322 (529)
T 4ex5_A 270 GGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAA 322 (529)
T ss_dssp TTCSEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHH
T ss_pred cCCCcEEEeehheecCCCCCCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999993
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-74 Score=624.46 Aligned_cols=288 Identities=44% Similarity=0.754 Sum_probs=262.9
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCccccc-CCcEEEEEEEEEeeecCCCceEEEEEEeC
Q psy11418 39 LTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVL-ENVTLSVAGRVHAIRESGTKLMFYDLRGE 117 (553)
Q Consensus 39 ~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~ 117 (553)
+.+++.+.|++|+++|+ .|++|||++|.+++++.+++++|.++..++.. .|++|+|+|||+++|.+| |++|++|+|+
T Consensus 13 ~~~~~~~~r~~k~~~l~-~g~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g-k~~F~~LrD~ 90 (504)
T 1e1o_A 13 DFNDELRNRREKLAALR-QQGVAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG-KASFVTLQDV 90 (504)
T ss_dssp HHHHHHHHHHHHHHHHH-HHSCSSCCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEET
T ss_pred ChhHHHHHHHHHHHHHH-hCCCCCCCCCcCceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCC-CcEEEEEEEC
Confidence 46789999999999999 99999999999999999999999877543221 278899999999999999 9999999999
Q ss_pred CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhccc
Q psy11418 118 GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQR 197 (553)
Q Consensus 118 ~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R 197 (553)
++.||||++++.. +++.|.+..+.|+.||+|+|+|+|.++++|++||.|++|+||++|+.|+|.+++++.++++|+++|
T Consensus 91 sg~iQvv~~~~~~-~~~~~~~~~~~l~~g~~V~V~G~v~~~~~ge~ei~~~~i~vl~~a~~plP~k~~~~~~~e~r~r~R 169 (504)
T 1e1o_A 91 GGRIQLYVARDSL-PEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQR 169 (504)
T ss_dssp TEEEEEEEETTTS-STTHHHHTGGGCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECCSSCCCC-------TTHHHHTH
T ss_pred CeeEEEEEECCcC-CHHHHHHHHhcCCCCCEEEEEEEEEecCCceEEEEEEEEEEecccCCCCCccccCCcChhhhhhcc
Confidence 9999999988754 344564256889999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHc
Q psy11418 198 YLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG 277 (553)
Q Consensus 198 ~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~ 277 (553)
|||||+|+.++++|++||+|++++|+||+++||+||+||+|++++|||+|+||.|+++++|+++|||+|||||+|+|+++
T Consensus 170 yLdL~~~~~~~~~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~~~~~~~~~yL~~SpqLylk~L~v~ 249 (504)
T 1e1o_A 170 YLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVG 249 (504)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETTTTEEEEECSCSHHHHHHHHHH
T ss_pred chhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEeccCCCCceEEeccCHHHHHHHHhhc
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhccc
Q psy11418 278 GLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRK 329 (553)
Q Consensus 278 g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~ 329 (553)
|++||||||||||||+++++|||||||||+|++|+|++|+|+++|+||++++
T Consensus 250 G~~rVyeIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~dlm~l~E~li~~~~ 301 (504)
T 1e1o_A 250 GFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLA 301 (504)
T ss_dssp TCCEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEcccccCCCCCccccCceeeeeeeecCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999994
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-73 Score=618.40 Aligned_cols=288 Identities=46% Similarity=0.748 Sum_probs=265.2
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCccccc-CCcEEEEEEEEEeeecCCCceEEEEEEeC
Q psy11418 39 LTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVL-ENVTLSVAGRVHAIRESGTKLMFYDLRGE 117 (553)
Q Consensus 39 ~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~ 117 (553)
+.+++.+.|++|+++|++.|++|||++|.+++++.+++++|.++..++.. .|++|+|+|||+++|.+| |++|++|+|+
T Consensus 4 ~~~~~~~~r~~k~~~l~~~g~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g-k~~F~~LrD~ 82 (493)
T 3a74_A 4 ELNDQLRVRREKLKKIEELGVDPFGKRFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMG-KAGFAHIQDV 82 (493)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCCTTCCCCCCSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEET
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCCCCcCceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCC-CcEEEEEEEC
Confidence 57889999999999999999999999999999999999999877643221 378899999999999999 8999999999
Q ss_pred CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhccc
Q psy11418 118 GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQR 197 (553)
Q Consensus 118 ~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R 197 (553)
++.||||++++.. +++.| +..+.|+.||+|+|+|++.++++|++||.|++|+||++|+.|+|.+++++.++++|+++|
T Consensus 83 sg~iQvv~~~~~~-~~~~~-~~~~~l~~g~~v~V~G~v~~~~~ge~ei~~~~i~vl~~~~~plP~k~~~~~~~e~r~r~R 160 (493)
T 3a74_A 83 TGQIQIYVRQDDV-GEQQY-ELFKISDLGDIVGVRGTMFKTKVGELSIKVSSYEFLTKALRPLPEKYHGLKDIEQRYRQR 160 (493)
T ss_dssp TEEEEEEEEHHHH-HHHHH-HHHHHCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECCSSCCCCC-----CHHHHHHTH
T ss_pred CEeEEEEEECCcC-CHHHH-HHHhcCCCCCEEEEEEEEEeCCCCcEEEEEEEEEEcccccCCCCccccCCCCHhhhhhcc
Confidence 9999999987643 23344 345789999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHc
Q psy11418 198 YLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG 277 (553)
Q Consensus 198 ~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~ 277 (553)
|||||+|+.++++|++||.|++++|+||.++||+||+||+|++++||++|+||.|+++++|+++|||+|||||+|+|+++
T Consensus 161 yldL~~~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~~~~~~~~~yLr~SpqLylk~l~v~ 240 (493)
T 3a74_A 161 YLDLIMNPESKKTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELHLKRLIVG 240 (493)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHHT
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEecccCCCceeEEecCHHHHHHHHhhc
Confidence 99999899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhccc
Q psy11418 278 GLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRK 329 (553)
Q Consensus 278 g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~ 329 (553)
|++|||+||||||||+++++|+|||||||+|++|+|++|+|+++|+||++++
T Consensus 241 G~~rVyeig~~FR~E~~~~rH~pEFT~lE~e~af~d~~dlm~l~E~ll~~l~ 292 (493)
T 3a74_A 241 GLEKVYEIGRVFRNEGISTRHNPEFTMLELYEAYADFRDIMKLTENLIAHIA 292 (493)
T ss_dssp TCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHH
T ss_pred ccCceEEECccccCCCCCcccCCceeEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999994
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-57 Score=503.67 Aligned_cols=236 Identities=26% Similarity=0.482 Sum_probs=215.6
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc---------c
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT---------K 159 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t---------~ 159 (553)
.|++|+|+|||+++|.+| |++|++|||++|.+|||++.+. .+.| +.++.|+.||+|.|+|+|.++ +
T Consensus 14 ~g~~V~l~GwV~~~R~~G-~~~Fi~LrD~~g~iQvv~~~~~---~~~~-~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~ 88 (585)
T 1c0a_A 14 VGQQVTLCGWVNRRRDLG-SLIFIDMRDREGIVQVFFDPDR---ADAL-KLASELRNEFCIQVTGTVRARDEKNINRDMA 88 (585)
T ss_dssp TTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECGGG---HHHH-HHHTTCCTTCEEEEEEEEEECCTTTCCTTST
T ss_pred CCCEEEEEEEEEEEecCC-CcEEEEEEECCeeEEEEEeCCc---hHHH-HHHhcCCCCCEEEEEeEEEccCcccccccCC
Confidence 477899999999999999 9999999999999999998653 3345 456889999999999999876 5
Q ss_pred CCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceec
Q psy11418 160 KGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMN 239 (553)
Q Consensus 160 ~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~ 239 (553)
+|++||.|++++||++|. ++|.+.++..+.++|+++|||||| |+.++++|++||+|++++|+||+++||+||+||+|+
T Consensus 89 ~geiEl~~~~i~vl~~a~-~lP~~~~~~~~~e~Rl~~R~LdLR-~~~~~~~l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~ 166 (585)
T 1c0a_A 89 TGEIEVLASSLTIINRAD-VLPLDSNHVNTEEARLKYRYLDLR-RPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLT 166 (585)
T ss_dssp TTTEEEEEEEEEEEECCC-SCSSCTTSCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSB
T ss_pred CccEEEEEeEEEEEeccC-CCCCCccccCCHhHhhhchHhhhc-CHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEe
Confidence 899999999999999997 678776677889999999999997 999999999999999999999999999999999998
Q ss_pred c-ccCCCCCcceeeccCCCCccee-eeeCHHHHHHHHHHccCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHH
Q psy11418 240 M-IAGGATAKPFVTHHNDLNMDLY-MRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDL 317 (553)
Q Consensus 240 ~-~~gga~a~~F~t~~~~~~~~~~-L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~ 317 (553)
. .++| |++|.|+++.++.++| |+||||||||+||++|++||||||||||||+++++|+|||||||+||+|+|++|+
T Consensus 167 ~s~~eG--Ar~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~t~r~pEFT~lE~e~af~d~~dv 244 (585)
T 1c0a_A 167 KATPEG--ARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQV 244 (585)
T ss_dssp CCCSSS--SCCCEEECSSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCCHHHH
T ss_pred cCCCCC--CccceecccccCCceEeCccCHHHHHHHHHhcCCCceEEEeceeecCCCCCCcCcccceeeeeecCCCHHHH
Confidence 5 4555 4789999888776665 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCC
Q psy11418 318 MHLTEDLISGRKEDRN 333 (553)
Q Consensus 318 m~~~e~li~~~~~~~~ 333 (553)
|+++|+||+++++.+.
T Consensus 245 m~~~E~li~~i~~~v~ 260 (585)
T 1c0a_A 245 REVMEALVRHLWLEVK 260 (585)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987653
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-57 Score=487.21 Aligned_cols=236 Identities=26% Similarity=0.446 Sum_probs=214.5
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccC--CceeEe
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK--GELSII 166 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~--ge~~l~ 166 (553)
.|++|+|+|||+++|.+| |++|++|+|+++.||||++++.. +++.| +..+.|+.||+|+|+|++.++++ |++||.
T Consensus 15 ~g~~V~v~Gwv~~~R~~g-~~~Fi~LrD~~g~iQ~v~~~~~~-~~~~~-~~~~~l~~~~~V~V~G~v~~~~~~~~~~el~ 91 (438)
T 3nem_A 15 NGQKVKVAGWVWEVKDLG-GIKFLWIRDRDGIVQITAPKKKV-DPELF-KLIPKLRSEDVVAVEGVVNFTPKAKLGFEIL 91 (438)
T ss_dssp TTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEETTTS-CHHHH-HHGGGCCTTCEEEEEEEEEECTTSTTSEEEE
T ss_pred CCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCCcC-CHHHH-HHHhcCCCCCEEEEEEEEEeCCCCCCcEEEE
Confidence 578999999999999999 89999999999999999998754 44445 56788999999999999998876 999999
Q ss_pred eeeEEEeccCCCCCCCCCCC--CCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccc--c
Q psy11418 167 PKKLTLLSPCLHMLPHMHFG--VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI--A 242 (553)
Q Consensus 167 ~~~i~il~~~~~~lP~~~~~--l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~--~ 242 (553)
+++++||++|..++|.++++ ..+.|+|+++|||||| |+.++++|++||+|++++|+||.++||+||+||+|+++ +
T Consensus 92 ~~~i~vl~~~~~~lP~~~~~~~~~~~e~r~~~R~Ldlr-~~~~~~~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~e 170 (438)
T 3nem_A 92 PEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLR-RPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATE 170 (438)
T ss_dssp EEEEEEEECBCSSCSSCTTSSSCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSS
T ss_pred EEEEEEEecCCCCCCCCccccccCCHHHHhhchHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCCC
Confidence 99999999999999988766 3689999999999995 99999999999999999999999999999999999754 4
Q ss_pred CCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCC-HHHHHHH
Q psy11418 243 GGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYAD-YNDLMHL 320 (553)
Q Consensus 243 gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~-~~~~m~~ 320 (553)
||+. .|.+ +++++++||++|||||+|+|+++|++|||+||||||||++++ ||+|||||||||++|+| ++|+|++
T Consensus 171 g~~~--~f~~--~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~~~~d~m~~ 246 (438)
T 3nem_A 171 GGTE--LFPM--KYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSF 246 (438)
T ss_dssp CSSS--CCEE--EETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCSSHHHHHHH
T ss_pred CCcc--ceeE--eeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCCCcccccceeeeeeeeccCccHHHHHHH
Confidence 5554 4543 368999999999999999999999999999999999999997 89999999999999999 9999999
Q ss_pred HHHHHhcccccC
Q psy11418 321 TEDLISGRKEDR 332 (553)
Q Consensus 321 ~e~li~~~~~~~ 332 (553)
+|+||+++++.+
T Consensus 247 ~E~li~~~~~~v 258 (438)
T 3nem_A 247 LERLVAHAINYV 258 (438)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997543
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-57 Score=498.78 Aligned_cols=236 Identities=25% Similarity=0.456 Sum_probs=213.4
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc-------cCC
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT-------KKG 161 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t-------~~g 161 (553)
.|++|+|+|||+++|.+| |++|++|||++|.||||++.+. + .| +..+.|+.||+|.|+|+|.++ ++|
T Consensus 15 ~g~~V~l~GwV~~~R~~G-~~~Fi~LrD~~g~iQvv~~~~~---~-~~-~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~g 88 (580)
T 1l0w_A 15 VGEEVVLEGWVNRRRDLG-GLIFLDLRDREGLVQLVAHPAS---P-AY-ATAERVRPEWVVRAKGLVRLRPEPNPRLATG 88 (580)
T ss_dssp TTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECTTS---T-TH-HHHTTCCTTCEEEEEEEEEECSSCCTTSTTT
T ss_pred CCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCCh---h-HH-HHHhcCCCCcEEEEEEEEEcCCCcCccCCCc
Confidence 477899999999999999 9999999999999999998753 1 34 456889999999999999876 589
Q ss_pred ceeEeeeeEEEeccCCCCCCCC--C------CCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEE
Q psy11418 162 ELSIIPKKLTLLSPCLHMLPHM--H------FGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEV 233 (553)
Q Consensus 162 e~~l~~~~i~il~~~~~~lP~~--~------~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV 233 (553)
++||.|++++||++|+ ++|.. . ++..+.++|+++|||||| |+.++++|++||+|++++|+||+++||+||
T Consensus 89 e~Ei~~~~i~vl~~a~-~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR-~~~~~~~l~~Rs~i~~~iR~fl~~~gF~EV 166 (580)
T 1l0w_A 89 RVEVELSALEVLAEAK-TPPFPVDAGWRGEEEKEASEELRLKYRYLDLR-RRRMQENLRLRHRVIKAIWDFLDREGFVQV 166 (580)
T ss_dssp TEEEEEEEEEEEECCC-CCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred cEEEEEeEEEEeccCc-CCCCCcchhccccccccCCHHHhhhhhHHHhc-CHHHHHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 9999999999999997 45532 2 557789999999999997 999999999999999999999999999999
Q ss_pred ecceecc-ccCCCCCcceeeccCCCCccee-eeeCHHHHHHHHHHccCCcEEEEccccccCCCCCCccCCcceeeeEecc
Q psy11418 234 ETPMMNM-IAGGATAKPFVTHHNDLNMDLY-MRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAY 311 (553)
Q Consensus 234 ~TPil~~-~~gga~a~~F~t~~~~~~~~~~-L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~ 311 (553)
+||+|+. .++| |++|.|+++.++.++| |+||||||||+||++|++||||||||||||+++++|+|||||||+||+|
T Consensus 167 eTPiL~~s~~eG--Ar~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~~~r~pEFT~lE~e~af 244 (580)
T 1l0w_A 167 ETPFLTKSTPEG--ARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSF 244 (580)
T ss_dssp CCCSSBCCCSSS--SCCCEEECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCCSSCCSEEEEEEEEEES
T ss_pred eCCEEecCCCCC--CCCccccccccCCceeECccCHHHHHHHHHHhccCCeEEEeceeeCCCCCCCcCCCccceeeeecC
Confidence 9999985 4555 4789999888877766 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcccccCCC
Q psy11418 312 ADYNDLMHLTEDLISGRKEDRNR 334 (553)
Q Consensus 312 ~~~~~~m~~~e~li~~~~~~~~~ 334 (553)
+|++|+|+++|+||+++++.+..
T Consensus 245 ~d~~dvm~~~E~li~~i~~~v~~ 267 (580)
T 1l0w_A 245 VEVEDVLELNERLMAHVFREALG 267 (580)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999886543
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-56 Score=486.27 Aligned_cols=240 Identities=24% Similarity=0.355 Sum_probs=201.4
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc-------C
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-------K 160 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~-------~ 160 (553)
..|++|+|+|||+++|.+| |++|++|||+++.||+|++++...+ +.+.++.+.|+.||+|.|+|+|.+++ +
T Consensus 60 ~~g~~V~v~Gwv~~~R~~g-kl~Fi~LrD~~g~iQ~v~~~~~~~~-~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~ 137 (548)
T 3i7f_A 60 MAEKTVTIRARVQAVRGKG-NMVFLFLRKGIYTCQALVMKSETIS-KEFVQFCQKISAESICDITGIVKAVEKPIEKATQ 137 (548)
T ss_dssp GTTCEEEEEEEEEEEEECS-SEEEEEEEETTEEEEEEEECSSSSC-HHHHHHHHTCCTTEEEEEEEEEEECSSCCTTSSS
T ss_pred cCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEECCCccC-HHHHHHHhCCCCCCEEEEEEEEEeCCcccccCCC
Confidence 4688999999999999999 9999999999999999998743223 34556788999999999999998864 5
Q ss_pred CceeEeeeeEEEeccCCCCCCCCCC-------------------------------------------------------
Q psy11418 161 GELSIIPKKLTLLSPCLHMLPHMHF------------------------------------------------------- 185 (553)
Q Consensus 161 ge~~l~~~~i~il~~~~~~lP~~~~------------------------------------------------------- 185 (553)
|++||++++|+|||+|+.++|.+..
T Consensus 138 ~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~ 217 (548)
T 3i7f_A 138 QDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQ 217 (548)
T ss_dssp CSEEEEEEEEEEEECCCBSCSSCSGGGSCCHHHHHHHHHHTTCC-------------------------------CCCCC
T ss_pred CcEEEEEeEEEEEecCCCCCCCCchhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999999997621
Q ss_pred C--CCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceee
Q psy11418 186 G--VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYM 263 (553)
Q Consensus 186 ~--l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L 263 (553)
+ ..+.++|+++|||||| ++.++++|++||+|++++|+||.++||+||+||+|++++++++|++|.+ ++++.++||
T Consensus 218 ~~~~~~~e~rl~~R~LdLR-~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~egga~~F~v--~~~~~~~yL 294 (548)
T 3i7f_A 218 KYVKVSQDTRLDNRMLDLR-TVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEV--KYFDRKAYL 294 (548)
T ss_dssp CCCCCCHHHHHTTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSBC---------------------CCB
T ss_pred ccccCCHHHhhhchhhccC-CHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccCCCCcceeEE--ecCCCceEe
Confidence 1 3578899999999998 8999999999999999999999999999999999998877777899986 679999999
Q ss_pred eeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccC-CHHHHHHHHHHHHhcccccC
Q psy11418 264 RIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYA-DYNDLMHLTEDLISGRKEDR 332 (553)
Q Consensus 264 ~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~-~~~~~m~~~e~li~~~~~~~ 332 (553)
++|||||||+|+++|++|||+||||||||++++ |||||||||||||+|. |++|+|+++|+||+++++.+
T Consensus 295 ~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~ 365 (548)
T 3i7f_A 295 AQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEI 365 (548)
T ss_dssp CSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999975 8999999999999998 79999999999999997654
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-56 Score=481.45 Aligned_cols=235 Identities=19% Similarity=0.296 Sum_probs=208.6
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccC-------
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK------- 160 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~------- 160 (553)
..|++|+|+|||+++|.+|++++|++|||+++.||||++++.. . +.+ ....|+.||+|.|+|++.+++.
T Consensus 28 ~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~iQvv~~~~~~-~-~~~--~~~~l~~g~~V~V~G~v~~~~~~~~~~~~ 103 (456)
T 3m4p_A 28 LEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKEL-C-EPE--KVKLLTRECSLEITGRLNAYAGKNHPPEI 103 (456)
T ss_dssp CCSSEEEEEEEEEEEECCSSSEEEEEEECSSCEEEEEEESTTT-T-CHH--HHTTCCTTCEEEEEEEEECCCSSSCCCSC
T ss_pred cCCCEEEEEEEEEEEecCCCceEEEEEEeCCccEEEEEecccc-h-hhH--HhhcCCCccEEEEEeEEEecCCcccCccc
Confidence 4688999999999999998679999999999999999997543 1 223 2457999999999999987653
Q ss_pred ---CceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecce
Q psy11418 161 ---GELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPM 237 (553)
Q Consensus 161 ---ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPi 237 (553)
|++||.+++++||++|+.++|.++++..+.|+|+++|||||| |+.++++|++||+|++++|+||.++||+||+||+
T Consensus 104 ~t~g~~El~~~~i~vl~~a~~~~~~~~~~~~~~e~r~~~R~LdlR-~~~~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPi 182 (456)
T 3m4p_A 104 ADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIR-SEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPT 182 (456)
T ss_dssp TTBCSSEEEEEEEEEEECCCGGGTTTSCTTCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCS
T ss_pred CCCCcEEEEEeEEEEEecCCCCCcccccccCCHHHHhhchHHhhh-cHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCe
Confidence 899999999999999988788777778899999999999995 9999999999999999999999999999999999
Q ss_pred eccc--cCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCCH
Q psy11418 238 MNMI--AGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYADY 314 (553)
Q Consensus 238 l~~~--~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~~ 314 (553)
|+++ +|| +.+|.+ ++||+++||++|||||||+|++ |++||||||||||||++++ ||||||||||||++|+|+
T Consensus 183 L~~s~~eGg--~~~f~~--~~~~~~~~L~~SpqL~lq~l~~-g~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d~ 257 (456)
T 3m4p_A 183 IVKTQCEGG--STLFKL--QYFNEPAYLTQSSQLYLESVIA-SLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISF 257 (456)
T ss_dssp EEC--------CCCCEE--EETTEEEEECSCCHHHHHTTHH-HHSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCCH
T ss_pred eecCCCCCc--cccccc--cccCCCcccccCHHHHHHHHHh-ccCcEEEEEhheecCCCCCCcchHHHHHhHHHHhcCCH
Confidence 9643 444 457854 7899999999999999999875 7999999999999999986 899999999999999999
Q ss_pred HHHHHHHHHHHhcccccC
Q psy11418 315 NDLMHLTEDLISGRKEDR 332 (553)
Q Consensus 315 ~~~m~~~e~li~~~~~~~ 332 (553)
+|+|+++|+||+++++.+
T Consensus 258 ~d~m~~~E~li~~~~~~v 275 (456)
T 3m4p_A 258 EDLLNHLEDLVCTVIDNV 275 (456)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999997543
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-55 Score=472.69 Aligned_cols=233 Identities=18% Similarity=0.292 Sum_probs=201.6
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc-----ccCCc
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK-----TKKGE 162 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~-----t~~ge 162 (553)
..|++|+|+|||+++|.+|++++|++|||+++.||||++.+.. +.|.. . .|+.||+|.|+|++.+ +++|+
T Consensus 9 ~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~iQvv~~~~~~---~~~~~-~-~l~~~~~v~v~G~v~~~~~~~~~~g~ 83 (435)
T 2xgt_A 9 HRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDKLC---QTYDA-L-TVNTECTVEIYGAIKEVPEGKEAPNG 83 (435)
T ss_dssp GTTSEEEEEEEEEEEEECTTSEEEEEEECSSCEEEEEEEGGGG---SSHHH-H-HCCTTCEEEEEEEEEECC------TT
T ss_pred cCCCEEEEEEEEEEecccCCCcEEEEEEECCceEEEEECCcch---hHHHH-h-cCCCCCEEEEEEEEEecCCCcCCCCc
Confidence 4678999999999999998689999999999999999985431 23432 3 6999999999999987 56899
Q ss_pred eeEeeeeEEEeccCC----CCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEeccee
Q psy11418 163 LSIIPKKLTLLSPCL----HMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMM 238 (553)
Q Consensus 163 ~~l~~~~i~il~~~~----~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil 238 (553)
+||.++++++|+++. .|+|.+ ..++|+|+++|||||| |+.++++|++||+|++++|+||+++||+||+||+|
T Consensus 84 ~El~~~~~~vl~~~~p~~~~pl~~~---~~~~e~r~~~R~Ldlr-~~~~~~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL 159 (435)
T 2xgt_A 84 HELIADFWKIIGNAPPGGIDNVLNE---EASVDKMLDNRHLVIR-GENAAALLRLRAAATRAMREHFYNAGYVEVAPPTL 159 (435)
T ss_dssp EEEEEEEEEEEECCCTTHHHHHCC-----CCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSE
T ss_pred EEEEEEEEEEeecCCCccccccccc---CCCHHHHhhCeeeeec-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeE
Confidence 999999999999853 234433 5789999999999995 99999999999999999999999999999999999
Q ss_pred ccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCCHHHH
Q psy11418 239 NMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYADYNDL 317 (553)
Q Consensus 239 ~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~~~~~ 317 (553)
+++..++++++|.+ +++|+++||++|||||||++++ |++||||||||||||++++ ||+|||||||||++|+|++|+
T Consensus 160 ~~s~~eG~~~~F~~--~~~g~~~~L~~SpqLylq~l~~-g~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d~~d~ 236 (435)
T 2xgt_A 160 VQTQVEGGSTLFNL--DYFGEQSFLTQSSQLYLETCIP-TLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDL 236 (435)
T ss_dssp ESCCSSCTTSCCEE--EETTEEEEECSCSHHHHHHHHH-HHCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCCHHHH
T ss_pred eeccCCCchhceee--ccCCcccccCCChHHHHHHhhh-ccCceEEEecceecCCCCccccccceeEEEEEEecCCHHHH
Confidence 75432233578865 6899999999999999999874 7999999999999999997 899999999999999999999
Q ss_pred HHHHHHHHhcccccC
Q psy11418 318 MHLTEDLISGRKEDR 332 (553)
Q Consensus 318 m~~~e~li~~~~~~~ 332 (553)
|+++|+|++++++.+
T Consensus 237 m~~~E~li~~~~~~v 251 (435)
T 2xgt_A 237 MEKIEELVCDTVDRL 251 (435)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999997654
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-55 Score=474.81 Aligned_cols=241 Identities=25% Similarity=0.345 Sum_probs=216.0
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccC--CCHHHHHHHhccCCCCcEEEEEeeccccc------
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMY--QSEEEFASDLVKIKRGDIIGVTGSPGKTK------ 159 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~--~~~~~~~~~~~~l~~gd~V~v~G~~~~t~------ 159 (553)
..|++|+|+|||+++|.+|+.++|++|||+++.||||++++.. .+++ +.+..+.|+.||+|+|+|+|.+++
T Consensus 34 ~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g~iQvv~~~~~~~~~~~~-~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~ 112 (487)
T 1eov_A 34 DSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKN-MVKWAGSLNLESIVLVRGIVKKVDEPIKSA 112 (487)
T ss_dssp TTTCEEEEEEEEEEEEECSSSEEEEEEEETTEEEEEEEECCSSSSSCHH-HHHHHTTCCTTCEEEEEEEEEECSSCCTTS
T ss_pred cCCCEEEEEEEEEEeeccCCccEEEEEEECCccEEEEEeccccccccHH-HHHHHhcCCCCCEEEEEEEEEeCCCCCcCC
Confidence 3578999999999999999334999999999999999987521 1333 345678899999999999999886
Q ss_pred -CCceeEeeeeEEEeccCCCCCCCCC------------CCC--CCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHH
Q psy11418 160 -KGELSIIPKKLTLLSPCLHMLPHMH------------FGV--KDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRY 224 (553)
Q Consensus 160 -~ge~~l~~~~i~il~~~~~~lP~~~------------~~l--~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~f 224 (553)
+|++||.|++|+||++|+.++|... +++ .+.|+|+++|||||| ++.+++++++||.|++++|+|
T Consensus 113 ~~g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr-~~~~~~~~~~rs~i~~~ir~~ 191 (487)
T 1eov_A 113 TVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLR-TVTNQAIFRIQAGVCELFREY 191 (487)
T ss_dssp SEEEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEEEEeecccccCCcchhhcccccccccccccccCChhhhhhcceeecC-CHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999998899632 333 688999999999998 899999999999999999999
Q ss_pred hhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcc
Q psy11418 225 LDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFT 303 (553)
Q Consensus 225 l~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt 303 (553)
|.++||+||+||+|+++++|++|++|.++ ++|.++|||||||||+|+|+++|++|||+||||||+|++++ ||+||||
T Consensus 192 ~~~~gF~EV~TPil~~~~~~~ga~~f~~~--~~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt 269 (487)
T 1eov_A 192 LATKKFTEVHTPKLLGAPSEGGSSVFEVT--YFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFT 269 (487)
T ss_dssp HHHTTCEECCCCSEESSCSSSSSCCCEEE--ETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEE
T ss_pred HHhCCcEEEeCCEEEEecCCCCcccceec--cCCccEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhh
Confidence 99999999999999987777788999986 58999999999999999999999999999999999999986 8999999
Q ss_pred eeeeEeccC-CHHHHHHHHHHHHhcccccC
Q psy11418 304 TCEFYMAYA-DYNDLMHLTEDLISGRKEDR 332 (553)
Q Consensus 304 ~lE~e~a~~-~~~~~m~~~e~li~~~~~~~ 332 (553)
|||+|++|. +++|+|+++|+|++++++.+
T Consensus 270 ~le~e~af~~~~~dlm~l~E~ll~~l~~~v 299 (487)
T 1eov_A 270 GLDMEMAFEEHYHEVLDTLSELFVFIFSEL 299 (487)
T ss_dssp EEEEEEECSSCTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999997 69999999999999997654
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-53 Score=455.59 Aligned_cols=234 Identities=27% Similarity=0.388 Sum_probs=214.0
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccC--CceeEe
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK--GELSII 166 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~--ge~~l~ 166 (553)
.|++|+|+|||+++|.+| |++|++|||+++.||||++++. +.| +..+.|+.||+|+|+|++.++++ |++||.
T Consensus 15 ~~~~V~v~Gwv~~~R~~g-~~~F~~lrD~~g~iQ~v~~~~~----~~~-~~~~~l~~~~~v~v~G~v~~~~~~~~~~el~ 88 (429)
T 1wyd_A 15 DGKEVIWAGWVHLLRDLG-GKKFIILRDKTGLGQVVVDKNS----SAF-GISQELTQESVIQVRGIVKADKRAPRGIELH 88 (429)
T ss_dssp TTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEECTTS----TTH-HHHTTCCTTCEEEEEEEEEECSSSGGGEEEE
T ss_pred CCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCCh----HHH-HHHHhCCCCCEEEEEEEEEecCCCCccEEEE
Confidence 578899999999999999 8999999999999999998753 234 34578999999999999998875 599999
Q ss_pred eeeEEEeccCCCCCCCCC-CC-CCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCC
Q psy11418 167 PKKLTLLSPCLHMLPHMH-FG-VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGG 244 (553)
Q Consensus 167 ~~~i~il~~~~~~lP~~~-~~-l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gg 244 (553)
|++++||++|+.++|... ++ ..+.|+|+++|||||| |+.+++++++||.|++++|+||.++||+||+||+|+++.++
T Consensus 89 ~~~~~vl~~~~~~~P~~~~~~~~~~~e~r~~~R~Ldlr-~~~~~~~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~~~e 167 (429)
T 1wyd_A 89 AEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLR-RQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATE 167 (429)
T ss_dssp EEEEEEEECCCSSCSSCSSSCCCCCHHHHHHTHHHHHT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSS
T ss_pred EeEEEEeccCCCCCCCCccccccCChhHhhhccceecc-CHHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCEEEeeCCC
Confidence 999999999988999543 33 3789999999999998 99999999999999999999999999999999999987777
Q ss_pred CCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCCHHHHHHHHHH
Q psy11418 245 ATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYADYNDLMHLTED 323 (553)
Q Consensus 245 a~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~~~~~m~~~e~ 323 (553)
+++++|.| +++|.++||++|||+|+|+ +++|++|||+||||||+|++++ ||+|||||||+|++|+|++|+|+++|+
T Consensus 168 ~~~~~f~~--~~~~~~~~L~~Spql~~~~-~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ 244 (429)
T 1wyd_A 168 GGAQLFPV--IYFGKEAFLAQSPQLYKEL-MAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEK 244 (429)
T ss_dssp TTCCCCEE--EETTEEEEECSCCHHHHHH-HHHHHSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEETCCHHHHHHHHHH
T ss_pred CCceeEEE--ecCCceEEecCCcHHHHHH-HHhCcCceEEEcccccccCCccccccceeeEeeeeecCCCHHHHHHHHHH
Confidence 77899998 5889999999999999999 7789999999999999999998 899999999999999999999999999
Q ss_pred HHhcccccC
Q psy11418 324 LISGRKEDR 332 (553)
Q Consensus 324 li~~~~~~~ 332 (553)
+++++++.+
T Consensus 245 ll~~l~~~~ 253 (429)
T 1wyd_A 245 ILHNIVKTI 253 (429)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999997643
|
| >4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-53 Score=468.24 Aligned_cols=248 Identities=26% Similarity=0.422 Sum_probs=218.9
Q ss_pred ccccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCC
Q psy11418 66 FTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKR 145 (553)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~ 145 (553)
+.+|+++.++.+.+ .|++|+|+|||+++|.+ +|++|||++|.+|||++++.. +++ +.+..+.|+.
T Consensus 9 ~~rt~~~~~l~~~~---------~g~~V~l~GwV~~~R~~----~Fi~LrD~~g~iQvv~~~~~~-~~~-~~~~~~~l~~ 73 (617)
T 4ah6_A 9 VVRTNTCGELRSSH---------LGQEVTLCGWIQYRRQN----TFLVLRDFDGLVQVIIPQDES-AAS-VKKILCEAPV 73 (617)
T ss_dssp SSCSSCGGGCCGGG---------TTCEEEEEEEECCCCTT----TEEEEECSSCEEEEECCCSSS-SHH-HHHHHHHCCS
T ss_pred ccCceEHHHhHHHh---------CCCEEEEEEEeeeecCe----EEEEEEeCCcCEEEEEeCCcC-cHH-HHHHHhcCCC
Confidence 35678877765432 57789999999999964 399999999999999987653 333 3356788999
Q ss_pred CcEEEEEeeccc---------ccCCceeEeeeeEEEeccCCCCCCCC--CCCCCCcchhhcccchhhhccHHHHHHHHHH
Q psy11418 146 GDIIGVTGSPGK---------TKKGELSIIPKKLTLLSPCLHMLPHM--HFGVKDKETRFRQRYLDLMINERIRHKFIVR 214 (553)
Q Consensus 146 gd~V~v~G~~~~---------t~~ge~~l~~~~i~il~~~~~~lP~~--~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~r 214 (553)
||+|.|+|+|.+ +++|++||.+++|+||++|. ++|.+ .++..+.++|+++|||||| ++.++++|++|
T Consensus 74 e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~-~lP~~~~~~~~~~ee~Rl~~R~LdLR-~~~~~~~lr~R 151 (617)
T 4ah6_A 74 ESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNACK-KLPFEIKNFVKKTEALRLQYRYLDLR-SFQMQYNLRLR 151 (617)
T ss_dssp SCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECBC-CCSSCTTTTCCSCHHHHHHTHHHHTT-SHHHHHHHHHH
T ss_pred CCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCCcccccccccChhhhccceeeeec-chHHHHHHHHH
Confidence 999999999875 45799999999999999998 88874 3456678999999999998 57899999999
Q ss_pred HHHHHHHHHHhh-hCCeEEEecceec-cccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccC
Q psy11418 215 AQIIAYVRRYLD-SLGFLEVETPMMN-MIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNE 292 (553)
Q Consensus 215 s~i~~~ir~fl~-~~gF~EV~TPil~-~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E 292 (553)
|+|++++|+||. ++||+||+||+|+ +++||| ++|.++++.++..+||++|||||+|+|+++|++||||||||||||
T Consensus 152 s~i~~~iR~f~~~~~gF~EVeTPiL~~st~~GA--~~F~v~~~~~g~~~~L~qSpql~kq~l~v~g~~rvfqi~~~FR~E 229 (617)
T 4ah6_A 152 SQMVMKMREYLCNLHGFVDIETPTLFKRTPGGA--KEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDE 229 (617)
T ss_dssp HHHHHHHHHHHHTTSCCEECCCCSSBCCCCSSS--CCCEEECSSTTCEEECCSSTTHHHHHHHHTSCSEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHhcCCeEEEeCCeeccCCCCCC--cCceeccccCCcccccccCHHHHHHHHHhcccCcEEEEEhheecc
Confidence 999999999995 7999999999997 456665 689999888999999999999999999999999999999999999
Q ss_pred CCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcccccC
Q psy11418 293 GIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDR 332 (553)
Q Consensus 293 ~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~~ 332 (553)
+++++|+|||||||+|++|+|++|+|+++|+|++++++..
T Consensus 230 ~~~t~r~pEFt~lE~e~af~d~~d~m~~~E~l~~~~~~~~ 269 (617)
T 4ah6_A 230 GSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPND 269 (617)
T ss_dssp SSCSSSCSEEEEEEEEEESCCHHHHHHHHHHHHHHHSCSS
T ss_pred cCCCCcCcceecceeeecCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998754
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-53 Score=450.99 Aligned_cols=235 Identities=23% Similarity=0.296 Sum_probs=214.3
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccC--CceeEe
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK--GELSII 166 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~--ge~~l~ 166 (553)
.|++|+|+|||+++|.+| |++|++|||+++.||||++++.. +++.| +.++.|+.||+|+|+|++.++++ |++||.
T Consensus 15 ~~~~V~v~G~v~~~R~~g-~~~F~~lrD~~g~iQ~v~~~~~~-~~~~~-~~~~~l~~~~~v~v~G~v~~~~~~~~~~el~ 91 (434)
T 1x54_A 15 DGKKVRLAGWVYTNMRVG-KKIFLWIRDSTGIVQAVVAKNVV-GEETF-EKAKKLGRESSVIVEGIVKADERAPGGAEVH 91 (434)
T ss_dssp TTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEECHHHH-CHHHH-HHHHTCCTTCEEEEEEEEEECTTSGGGEEEE
T ss_pred CCCEEEEEEEEEEEecCC-CeEEEEEEECCEEEEEEEECCcC-CHHHH-HHHhcCCCCCEEEEEEEEEecCCCCccEEEE
Confidence 578899999999999999 89999999999999999986543 34455 45578999999999999998875 499999
Q ss_pred eeeEEEeccCCCCCCC--CCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCC
Q psy11418 167 PKKLTLLSPCLHMLPH--MHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGG 244 (553)
Q Consensus 167 ~~~i~il~~~~~~lP~--~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gg 244 (553)
|+++++|++| .++|. ... ..+.|+|+++|||||| |+.+++++++|+.|++++|+||.++||+||+||+|+++.++
T Consensus 92 ~~~~~vl~~~-~~~P~~~~~~-~~~~e~r~~~R~Ldlr-~~~~~~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~~~e 168 (434)
T 1x54_A 92 VEKLEVIQAV-SEFPIPENPE-QASPELLLDYRHLHIR-TPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVE 168 (434)
T ss_dssp EEEEEEEECC-SCCSSCSSGG-GSCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCSS
T ss_pred EeEEEEeecC-CCCCCccccc-CCCHHHhhhceeeeec-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEeecCC
Confidence 9999999999 88996 322 3688999999999998 99999999999999999999999999999999999988777
Q ss_pred CCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCCHHHHHHHHHH
Q psy11418 245 ATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYADYNDLMHLTED 323 (553)
Q Consensus 245 a~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~~~~~m~~~e~ 323 (553)
+++++|.| +++|.++|||+|||+|+|+ +++|++|||+||||||+|++++ ||+|||||||+|++|.|++|+|+++|+
T Consensus 169 ~~~~~f~~--~~~~~~~~Lr~Spel~~~~-~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ 245 (434)
T 1x54_A 169 GGATLFKL--KYFDKYAYLSQSAQLYLEA-AIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEE 245 (434)
T ss_dssp CGGGCCEE--EETTEEEEECSCSHHHHHH-HHHHHSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCCHHHHHHHHHH
T ss_pred CCceeEEE--eecCCcEEeccChHHHHHH-HhcCccceEEEecceecCCCCCcccccEEEEeeEEEcCCCHHHHHHHHHH
Confidence 77899998 5889999999999999999 6789999999999999999998 899999999999999999999999999
Q ss_pred HHhcccccC
Q psy11418 324 LISGRKEDR 332 (553)
Q Consensus 324 li~~~~~~~ 332 (553)
+++++++.+
T Consensus 246 ll~~l~~~v 254 (434)
T 1x54_A 246 LVSYMVQRT 254 (434)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999997653
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-53 Score=449.29 Aligned_cols=226 Identities=28% Similarity=0.418 Sum_probs=162.8
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCC-CCcEEEEEeecccccC--CceeE
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIK-RGDIIGVTGSPGKTKK--GELSI 165 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~-~gd~V~v~G~~~~t~~--ge~~l 165 (553)
.|++|+|+|||+++|.+| |++|++|||+++.||||+++ +.|+ .||+|.|+|++.++++ |++||
T Consensus 12 ~~~~V~v~Gwv~~~R~~g-~~~F~~lrD~~g~iQ~v~~~-------------~~l~~~~~~v~v~G~v~~~~~~~~~~el 77 (422)
T 1n9w_A 12 VGQEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQVVTGG-------------LKLPLPESALRVRGLVVENAKAPGGLEV 77 (422)
T ss_dssp TTSEEEEEEEEEEEEECS-SEEEEEEEETTEEEEEEEES-------------CCCCCTTCEEEEEEEEEECTTSTTSEEE
T ss_pred CCCEEEEEEEEEEEecCC-CeEEEEEEECCEEEEEEEEc-------------cccCCCCCEEEEEEEEEecCCCCccEEE
Confidence 578899999999999999 89999999999999999975 3589 9999999999998874 59999
Q ss_pred eeeeEEEeccCCCCCCCCC-C--CCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceecccc
Q psy11418 166 IPKKLTLLSPCLHMLPHMH-F--GVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 242 (553)
Q Consensus 166 ~~~~i~il~~~~~~lP~~~-~--~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~ 242 (553)
.|+++++|++|+.++|... . +..+.|+|+++|||||| |+.+++++++|+.|++++|+||.++||+||+||+|+++.
T Consensus 78 ~~~~~~vl~~~~~~~P~~~~~~~~~~~~e~r~~~R~Ldlr-~~~~~~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~ 156 (422)
T 1n9w_A 78 QAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLR-GEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAG 156 (422)
T ss_dssp EEEEEEEEECCCSCCC-----------------CHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC------
T ss_pred EEeEEEEeccCCcCCCCCccccccCCCHHHHhhhhHHhhc-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeC
Confidence 9999999999988999532 2 45788999999999998 999999999999999999999999999999999999777
Q ss_pred CCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccC-CHHHHHHH
Q psy11418 243 GGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYA-DYNDLMHL 320 (553)
Q Consensus 243 gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~-~~~~~m~~ 320 (553)
+|+++++|.+ +++|.++||++|||+|+|+++ +|++|||+||||||+|++++ ||+|||||||+|++|+ |++|+|++
T Consensus 157 ~e~~~~~f~~--~~~g~~~~L~~Spel~~~~l~-~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d~~dlm~l 233 (422)
T 1n9w_A 157 AEGGSGLFGV--DYFEKRAYLAQSPQLYKQIMV-GVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRL 233 (422)
T ss_dssp ------------------------CHHHHHHHH-HHHSEEEEEEEC-------------CCEEEEEEEESCSSHHHHHHH
T ss_pred CCCCceeEEE--eeCCCcEEeeeCHHHHHHHHh-hCCCceeEEeCceECCCCCCCcccceeEEeeeeeeCCCCHHHHHHH
Confidence 7777899988 588999999999999999987 78999999999999999998 8999999999999999 99999999
Q ss_pred HHHHHhcccccC
Q psy11418 321 TEDLISGRKEDR 332 (553)
Q Consensus 321 ~e~li~~~~~~~ 332 (553)
+|+|++++++.+
T Consensus 234 ~e~ll~~l~~~~ 245 (422)
T 1n9w_A 234 EEALLAEMLEEA 245 (422)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997644
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=298.01 Aligned_cols=124 Identities=35% Similarity=0.554 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCeEEEecceecccc-CCCCCcceeeccC----CCCcceeeeeCHHHHHHHHHHccCCc
Q psy11418 207 IRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHHN----DLNMDLYMRIAPELYLKMLVVGGLDR 281 (553)
Q Consensus 207 ~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~-gga~a~~F~t~~~----~~~~~~~L~~Spql~lk~l~~~g~~r 281 (553)
.+++|++||+|+++||+||.++||+||+||+|+++. +|+.++||.|+++ ..+.++||+||||||+|+|+++|++|
T Consensus 32 ~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~~g~~r 111 (345)
T 3a5y_A 32 SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGP 111 (345)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEEEecCcccccCCCEeecCCHHHHHHHHHHcCCCc
Confidence 789999999999999999999999999999999654 4577999998643 23378999999999999999999999
Q ss_pred EEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcccc
Q psy11418 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKE 330 (553)
Q Consensus 282 Vfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~ 330 (553)
|||||||||||+++++|+|||||||+|++|+|++|+|+++|+||+++++
T Consensus 112 vyqIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~ 160 (345)
T 3a5y_A 112 VFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLD 160 (345)
T ss_dssp EEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHC
T ss_pred EEEEEcceeCCCCcccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHc
Confidence 9999999999999889999999999999999999999999999999986
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=298.66 Aligned_cols=217 Identities=23% Similarity=0.355 Sum_probs=181.3
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCC--CceeEEeeeEEEEeccCCCCCccccC--
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK--GELSIIPKKLTLLSPCLHMLPHMHFG-- 400 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~--g~~El~~~~i~vl~~~~~~~P~~~~~-- 400 (553)
|..+-++.+.+|++++.... .++.+..++.|+.||+|.|+|.+.++++ |++||.+++++||++|..++|+++++
T Consensus 36 Fi~LrD~~g~iQ~v~~~~~~--~~~~~~~~~~l~~~~~V~V~G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~ 113 (438)
T 3nem_A 36 FLWIRDRDGIVQITAPKKKV--DPELFKLIPKLRSEDVVAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKV 113 (438)
T ss_dssp EEEEEETTEEEEEEEETTTS--CHHHHHHGGGCCTTCEEEEEEEEEECTTSTTSEEEEEEEEEEEECBCSSCSSCTTSSS
T ss_pred EEEEEECCeeEEEEEeCCcC--CHHHHHHHhcCCCCCEEEEEEEEEeCCCCCCcEEEEEEEEEEEecCCCCCCCCccccc
Confidence 45667778889999876432 2456778899999999999999998875 89999999999999999889998876
Q ss_pred CCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcceeeeeecCCCCCcceeEE
Q psy11418 401 VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKPFVTHHNDLNMDLYMR 478 (553)
Q Consensus 401 ~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~~~~~t~~~~~~~~~yL~ 478 (553)
..+.++|+++|||||| ++.++++|++||.++++||+||.++||+||+||+|++++ ||+.+||+. +||.++||+
T Consensus 114 ~~~~e~r~~~R~Ldlr-~~~~~~~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~eg~~~~f~~~----~~~~~~yL~ 188 (438)
T 3nem_A 114 KAELDTRLDNRFMDLR-RPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMK----YFEEDAFLA 188 (438)
T ss_dssp CCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSCSSSCCEEE----ETTEEEEEC
T ss_pred cCCHHHHhhchHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCCCCCccceeEe----eCCccEEEe
Confidence 3689999999999998 999999999999999999999999999999999999987 677799998 889999999
Q ss_pred eChhHHHHHhc-cCcceEe----------------cCCCCCCC-----CC------------------------------
Q psy11418 479 IAPELYLKSTH-GSYKVTY----------------HPDGPESG-----SP------------------------------ 506 (553)
Q Consensus 479 ~Spel~~k~l~-~~~~~~~----------------~~e~~~~~-----~~------------------------------ 506 (553)
+|||||+|++. ++++++| +|||+|+. ..
T Consensus 189 ~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~ 268 (438)
T 3nem_A 189 QSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDI 268 (438)
T ss_dssp SCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cChHHHHHHHHhcCCCceEEEcceEECCCCCCcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHhh
Confidence 99999999884 7787765 47887640 00
Q ss_pred cccC---CCCCceeeeHHHHHHH--HhCCCCCCCCCCChHHHHHHHh
Q psy11418 507 VEID---FTPPFRRLHMFPALEA--ALGVKLPNPTEFDTPEANKFLS 548 (553)
Q Consensus 507 ~~~~---~~~~f~rit~~eA~~~--~~g~~~~~~~~~~~~~~~~~~~ 548 (553)
...+ +..||+||||.||++. ..|+++.+..+++++....+++
T Consensus 269 ~~~~l~~~~~pf~rity~eai~~l~~~g~~~~~~~dl~~~~e~~l~~ 315 (438)
T 3nem_A 269 LNFELEEPKLPFPRVSYDKALEILGDLGKEIPWGEDIDTEGERLLGK 315 (438)
T ss_dssp TTCCCCCCCSSCCEEEHHHHHHHHHHTTCCCCTTSCCCHHHHHHHHH
T ss_pred cccccccCCCCceEEEHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHH
Confidence 0112 3569999999999985 5688888777888776665543
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.6e-33 Score=304.76 Aligned_cols=170 Identities=39% Similarity=0.675 Sum_probs=149.9
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCCh
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK 404 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~~ 404 (553)
|..+-++.+.+|++++.... .++.+..+++|+.||+|.|+|.|.++++|++||.+++|+||++|..++|.++++..++
T Consensus 106 Fi~LrD~sg~iQvv~~~~~~--~~~~~~~~~~l~~gd~V~V~G~v~~t~~gelel~~~~i~vLs~a~~plP~k~~~l~d~ 183 (529)
T 4ex5_A 106 FATVQDGSGQIQFFVTPADV--GAETYDAFKKWDLGDIVAARGVLFRTNKGELSVKCTQLRLLAKALRPLPDKFHGLADQ 183 (529)
T ss_dssp EEEEECSSCEEEEEECHHHH--CHHHHHHHHTCCTTCEEEEEEEEEECTTSCEEEEEEEEEEEECCSSCCCC------CT
T ss_pred EEEEEeCCeeEEEEEECCcC--CHHHHHHHhcCCCCCEEEEEEEEEEcCCCcEEEEEEEEEEEecCCCCCCccccCCcCh
Confidence 45677788899999876332 2345577788999999999999999999999999999999999998999999898899
Q ss_pred hhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhHH
Q psy11418 405 ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELY 484 (553)
Q Consensus 405 e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel~ 484 (553)
++|+++||||||+|+.++++|++||+++++||+||+++||+||+||+|++++|||++.||.|++++|+.++||+||||||
T Consensus 184 e~r~r~RyLdLr~~~~~~~~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~gGA~a~pF~t~~n~~~~~~yL~~SpqLy 263 (529)
T 4ex5_A 184 ETRYRQRYVDLIVTPETRTTFRARTKAIASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVTHHNALDMEMFLRIAPELY 263 (529)
T ss_dssp THHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTTTEEEEECSCSHHH
T ss_pred hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeeeccCCCCcccccccccccCCcceecccCHHHH
Confidence 99999999999889999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHh-ccCcceEe
Q psy11418 485 LKST-HGSYKVTY 496 (553)
Q Consensus 485 ~k~l-~~~~~~~~ 496 (553)
+|++ +++++++|
T Consensus 264 lk~L~v~G~~rVy 276 (529)
T 4ex5_A 264 LKRLIVGGFERVF 276 (529)
T ss_dssp HHHHHHTTCSEEE
T ss_pred HHHHHhcCCCcEE
Confidence 9986 68888876
|
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.9e-33 Score=303.19 Aligned_cols=172 Identities=64% Similarity=1.077 Sum_probs=151.2
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCCh
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK 404 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~~ 404 (553)
|..+-++.+.+|++++.......+.+..+.+.|+.||+|.|+|.+.++++|++||.+++|+||++|..++|.+.++..++
T Consensus 76 F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~ge~ei~~~~i~~l~~~~~~lP~~~~~~~~~ 155 (521)
T 3bju_A 76 FYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 155 (521)
T ss_dssp EEEEEETTEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECCCSCCCCC----CCH
T ss_pred EEEEEECCEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecCCCCEEEEEeEEEEeecCCCCCCCccccccCh
Confidence 45666777889999876443223445555678999999999999999999999999999999999998999998888899
Q ss_pred hhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhHH
Q psy11418 405 ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELY 484 (553)
Q Consensus 405 e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel~ 484 (553)
++|+++||||||+|+.++++|++||.++++||+||.++||+||+||+|++++|||++.||.|++++||.++||+||||||
T Consensus 156 e~r~r~RyLdLr~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t~~~~~~~~~yL~~SpqL~ 235 (521)
T 3bju_A 156 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELY 235 (521)
T ss_dssp HHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEEEETTTTEEEEECSCSHHH
T ss_pred hhhhhhhhhhHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCceeeccCCCccccceeeecccCCcceEeeCCHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHh-ccCcceEe
Q psy11418 485 LKST-HGSYKVTY 496 (553)
Q Consensus 485 ~k~l-~~~~~~~~ 496 (553)
+|++ +++++++|
T Consensus 236 lk~liv~g~~rVy 248 (521)
T 3bju_A 236 HKMLVVGGIDRVY 248 (521)
T ss_dssp HHHHHHTTCCEEE
T ss_pred HHHHHhcCcCceE
Confidence 9986 67788876
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-32 Score=299.54 Aligned_cols=197 Identities=19% Similarity=0.304 Sum_probs=162.0
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccC-------CCCceeEEeeeEEEEeccC-CCCCc
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT-------KKGELSIIPKKLTLLSPCL-HMLPH 396 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~-------~~g~~El~~~~i~vl~~~~-~~~P~ 396 (553)
|..+-++.+.+|++++... + .+..++.|+.||+|.|+|+|.++ ++|++||.+++++||++|. .|+|+
T Consensus 36 Fi~LrD~~g~iQvv~~~~~----~-~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i 110 (580)
T 1l0w_A 36 FLDLRDREGLVQLVAHPAS----P-AYATAERVRPEWVVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPV 110 (580)
T ss_dssp EEEEEETTEEEEEEECTTS----T-THHHHTTCCTTCEEEEEEEEEECSSCCTTSTTTTEEEEEEEEEEEECCCCCSSCC
T ss_pred EEEEEECCeeEEEEEeCCh----h-HHHHHhcCCCCcEEEEEEEEEcCCCcCccCCCccEEEEEeEEEEeccCcCCCCCc
Confidence 4567778888999987532 2 45567899999999999999876 5789999999999999996 23444
Q ss_pred cc------cCCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcceeeeeecCC
Q psy11418 397 MH------FGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHHN 469 (553)
Q Consensus 397 ~~------~~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~~~~~~t~~~ 469 (553)
.. +...++++|+++|||||| +|.++++|++||+++++||+||+++||+|||||+|++++ |||. +|.++++
T Consensus 111 ~~~~~~~~~~~~~~e~Rl~~RyLdLR-~~~~~~~l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~~eGAr--~F~v~~~ 187 (580)
T 1l0w_A 111 DAGWRGEEEKEASEELRLKYRYLDLR-RRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGAR--DFLVPYR 187 (580)
T ss_dssp SSGGGTCCCCCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSC--CCEEECT
T ss_pred chhccccccccCCHHHhhhhhHHHhc-CHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCCCCCC--Ccccccc
Confidence 33 446789999999999999 999999999999999999999999999999999999887 8875 5666666
Q ss_pred CCCccee-EEeChhHHHHHh-ccCcceEe---------------cCCCCCCC------------------------CCcc
Q psy11418 470 DLNMDLY-MRIAPELYLKST-HGSYKVTY---------------HPDGPESG------------------------SPVE 508 (553)
Q Consensus 470 ~~~~~~y-L~~Spel~~k~l-~~~~~~~~---------------~~e~~~~~------------------------~~~~ 508 (553)
.++.+.| |+||||||+|+| +++++++| +|||+|+. ....
T Consensus 188 ~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~~~r~pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~ 267 (580)
T 1l0w_A 188 HEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALG 267 (580)
T ss_dssp TSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCCceeECccCHHHHHHHHHHhccCCeEEEeceeeCCCCCCCcCCCccceeeeecCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 6665555 999999999985 77888766 88888641 0112
Q ss_pred cCCCCCceeeeHHHHHHHHhC
Q psy11418 509 IDFTPPFRRLHMFPALEAALG 529 (553)
Q Consensus 509 ~~~~~~f~rit~~eA~~~~~g 529 (553)
+++..||+||||.|||++|++
T Consensus 268 ~~~~~pf~rity~eA~~~~g~ 288 (580)
T 1l0w_A 268 VELPLPFPRLSYEEAMERYGS 288 (580)
T ss_dssp CCCCSSCCEEEHHHHHHHHSS
T ss_pred CccCCCccEEEHHHHHHHhcC
Confidence 456779999999999999954
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-31 Score=290.57 Aligned_cols=216 Identities=20% Similarity=0.254 Sum_probs=162.7
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC-------CCceeEEeeeEEEEeccCCCCCcc
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-------KGELSIIPKKLTLLSPCLHMLPHM 397 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~-------~g~~El~~~~i~vl~~~~~~~P~~ 397 (553)
|..+-++.+.+|++++.... ..+++..+++.|+.||+|.|+|+|.+++ +|++||++++|+||++|..++|++
T Consensus 82 Fi~LrD~~g~iQ~v~~~~~~-~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a~~~lP~~ 160 (548)
T 3i7f_A 82 FLFLRKGIYTCQALVMKSET-ISKEFVQFCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQ 160 (548)
T ss_dssp EEEEEETTEEEEEEEECSSS-SCHHHHHHHHTCCTTEEEEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECCCBSCSSC
T ss_pred EEEEEECCeeEEEEEECCCc-cCHHHHHHHhCCCCCCEEEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecCCCCCCCC
Confidence 45666778889988875222 2357888899999999999999998765 589999999999999998889987
Q ss_pred ccC---------------------------------------------------------CCChhhhccccceeeecChH
Q psy11418 398 HFG---------------------------------------------------------VKDKETRFRQRYLDLMINER 420 (553)
Q Consensus 398 ~~~---------------------------------------------------------~~~~e~~~~~R~L~lR~~~~ 420 (553)
+.+ ..+.++|+++|||||| ++.
T Consensus 161 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR-~~~ 239 (548)
T 3i7f_A 161 IEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLR-TVT 239 (548)
T ss_dssp SGGGSCCHHHHHHHHHHTTCC-------------------------------CCCCCCCCCCCHHHHHTTHHHHTT-SHH
T ss_pred chhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCHHHhhhchhhccC-CHH
Confidence 421 3478999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcceeeeeecCCCCCcceeEEeChhHHHHHh-ccCcceEe-
Q psy11418 421 IRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKPFVTHHNDLNMDLYMRIAPELYLKST-HGSYKVTY- 496 (553)
Q Consensus 421 ~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~~~~~t~~~~~~~~~yL~~Spel~~k~l-~~~~~~~~- 496 (553)
++++|++||.++++||+||.++||+||+||+|++++ |||..|.+. ||+.++||++|||||||++ +++++++|
T Consensus 240 ~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~egga~~F~v~----~~~~~~yL~~Spql~~k~ll~~g~~rVfe 315 (548)
T 3i7f_A 240 NIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVK----YFDRKAYLAQSPQLYKQMAIMGDFRKVFE 315 (548)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEECCCCSBC-----------------------CCBCSCTHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccCCCCcceeEEe----cCCCceEeccCHHHHHHHHHhcCcCcEEE
Confidence 999999999999999999999999999999999998 355555443 8999999999999999976 66777655
Q ss_pred ---------------cCCCCCCC-----C-------------------------------------CcccCCCCCceeee
Q psy11418 497 ---------------HPDGPESG-----S-------------------------------------PVEIDFTPPFRRLH 519 (553)
Q Consensus 497 ---------------~~e~~~~~-----~-------------------------------------~~~~~~~~~f~rit 519 (553)
+|||+|+. . ...+++ .||+|||
T Consensus 316 I~~~FR~E~~~t~RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~~~~~~el~~~~~~~~~~~~~~-~pf~rit 394 (548)
T 3i7f_A 316 VGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIY-RPFLRLT 394 (548)
T ss_dssp EEEECCCSCCCSSSCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCCCC-CSCEEEE
T ss_pred EeeeEecCCCCCCCcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCcccccc-CCcceeE
Confidence 57887640 0 001122 6899999
Q ss_pred HHHHHHHH--hCCCCCCCCCCChHHHHHHH
Q psy11418 520 MFPALEAA--LGVKLPNPTEFDTPEANKFL 547 (553)
Q Consensus 520 ~~eA~~~~--~g~~~~~~~~~~~~~~~~~~ 547 (553)
|.||++.+ .|+++.+..+++++....+.
T Consensus 395 ~~eai~~l~~~g~~~~~~~dl~~~~e~~l~ 424 (548)
T 3i7f_A 395 YKEAIEMLRASGETIGDYDDFTTPQEVKLG 424 (548)
T ss_dssp HHHHHHHHHHTTCCCCTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCccccchHHHHHHH
Confidence 99999865 78888877778777655444
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=296.71 Aligned_cols=196 Identities=21% Similarity=0.348 Sum_probs=162.3
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccC---------CCCceeEEeeeEEEEeccCCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT---------KKGELSIIPKKLTLLSPCLHMLP 395 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~---------~~g~~El~~~~i~vl~~~~~~~P 395 (553)
|..+-++.+.+|++++... ++.+..++.|+.||+|.|+|+|.++ ++|++||.+++++||++|. ++|
T Consensus 35 Fi~LrD~~g~iQvv~~~~~----~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~~geiEl~~~~i~vl~~a~-~lP 109 (585)
T 1c0a_A 35 FIDMRDREGIVQVFFDPDR----ADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRAD-VLP 109 (585)
T ss_dssp EEEEEETTEEEEEEECGGG----HHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTTSTTTTEEEEEEEEEEEECCC-SCS
T ss_pred EEEEEECCeeEEEEEeCCc----hHHHHHHhcCCCCCEEEEEeEEEccCcccccccCCCccEEEEEeEEEEEeccC-CCC
Confidence 5567778888999987532 4556677899999999999999876 4789999999999999997 577
Q ss_pred ccccCCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcceeeeeecCCCCCcc
Q psy11418 396 HMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHHNDLNMD 474 (553)
Q Consensus 396 ~~~~~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~~~~~~t~~~~~~~~ 474 (553)
+.+.+..++++|+++|||||| +|.++++|++||+++++||+||+++||+|||||+|++++ |||+ +|.++++.++.+
T Consensus 110 ~~~~~~~~~e~Rl~~R~LdLR-~~~~~~~l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~eGAr--~F~v~~~~~~~~ 186 (585)
T 1c0a_A 110 LDSNHVNTEEARLKYRYLDLR-RPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGAR--DYLVPSRVHKGK 186 (585)
T ss_dssp SCTTSCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSC--CCEEECSSSTTC
T ss_pred CCccccCCHhHhhhchHhhhc-CHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCCCCCc--cceecccccCCc
Confidence 777677889999999999999 999999999999999999999999999999999999877 8875 566666566555
Q ss_pred e-eEEeChhHHHHHh-ccCcceEe---------------cCCCCCCCC------------------------CcccCCCC
Q psy11418 475 L-YMRIAPELYLKST-HGSYKVTY---------------HPDGPESGS------------------------PVEIDFTP 513 (553)
Q Consensus 475 ~-yL~~Spel~~k~l-~~~~~~~~---------------~~e~~~~~~------------------------~~~~~~~~ 513 (553)
. ||+||||||+|+| +++++++| +|||+|+.. ....++..
T Consensus 187 ~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~t~r~pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~~~~~ 266 (585)
T 1c0a_A 187 FYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGD 266 (585)
T ss_dssp EEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSCCCCS
T ss_pred eEeCccCHHHHHHHHHhcCCCceEEEeceeecCCCCCCcCcccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 5 5999999999985 77788766 788887410 01123444
Q ss_pred CceeeeHHHHHHHHhC
Q psy11418 514 PFRRLHMFPALEAALG 529 (553)
Q Consensus 514 ~f~rit~~eA~~~~~g 529 (553)
|+||||.|||++|+.
T Consensus 267 -f~r~ty~ea~~~~g~ 281 (585)
T 1c0a_A 267 -FPVMTFAEAERRYGS 281 (585)
T ss_dssp -CCEEEHHHHHHHHSC
T ss_pred -cceeeHHHHHHHhcC
Confidence 999999999999954
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=287.71 Aligned_cols=216 Identities=15% Similarity=0.206 Sum_probs=166.5
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCC----------CceeEEeeeEEEEeccCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK----------GELSIIPKKLTLLSPCLHML 394 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~----------g~~El~~~~i~vl~~~~~~~ 394 (553)
|..+-++.+.+|++++..... +.. .+..|+.||+|.|+|.|++++. |++||.+++++||++|..++
T Consensus 51 Fi~LrD~sg~iQvv~~~~~~~---~~~-~~~~l~~g~~V~V~G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~~~~ 126 (456)
T 3m4p_A 51 FVELRDGSGYCQCVIFGKELC---EPE-KVKLLTRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDL 126 (456)
T ss_dssp EEEEECSSCEEEEEEESTTTT---CHH-HHTTCCTTCEEEEEEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECCCGGG
T ss_pred EEEEEeCCccEEEEEecccch---hhH-HhhcCCCccEEEEEeEEEecCCcccCcccCCCCcEEEEEeEEEEEecCCCCC
Confidence 456667788899988763322 122 2458999999999999987653 89999999999999998666
Q ss_pred CccccCCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcceeeeeecCCCCC
Q psy11418 395 PHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKPFVTHHNDLN 472 (553)
Q Consensus 395 P~~~~~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~~~~~t~~~~~~ 472 (553)
|....+..++|+|+++|||||| ++.++++|++||.++++||+||+++||+||+||+|++++ ||+.+|++. |||
T Consensus 127 ~~~~~~~~~~e~r~~~R~LdlR-~~~~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~eGg~~~f~~~----~~~ 201 (456)
T 3m4p_A 127 ENIINKDSSIPQKMQNRHIVIR-SEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKLQ----YFN 201 (456)
T ss_dssp TTTSCTTCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEC------CCCCEEE----ETT
T ss_pred cccccccCCHHHHhhchHHhhh-cHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCCCCcccccccc----ccC
Confidence 6555667889999999999998 999999999999999999999999999999999998886 666677665 999
Q ss_pred cceeEEeChhHHHHHhccCcceEe----------------cCCCCCCCC-------------------------------
Q psy11418 473 MDLYMRIAPELYLKSTHGSYKVTY----------------HPDGPESGS------------------------------- 505 (553)
Q Consensus 473 ~~~yL~~Spel~~k~l~~~~~~~~----------------~~e~~~~~~------------------------------- 505 (553)
.++||++|||||+|++.++++++| +|||+|+..
T Consensus 202 ~~~~L~~SpqL~lq~l~~g~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~ 281 (456)
T 3m4p_A 202 EPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGD 281 (456)
T ss_dssp EEEEECSCCHHHHHTTHHHHSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccCHHHHHHHHHhccCcEEEEEhheecCCCCCCcchHHHHHhHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999876666654 578876410
Q ss_pred ---CcccCC---CCCceeeeHHHHHHHH--hCCCC-----CCCCCCChHHHHHHHhC
Q psy11418 506 ---PVEIDF---TPPFRRLHMFPALEAA--LGVKL-----PNPTEFDTPEANKFLSD 549 (553)
Q Consensus 506 ---~~~~~~---~~~f~rit~~eA~~~~--~g~~~-----~~~~~~~~~~~~~~~~~ 549 (553)
...++| ..||+||||.||++.+ .|++. .++.+++......+.+.
T Consensus 282 ~~~~~~~~~~~~~~pf~rity~eAi~~l~~~g~~~~~~~~~~g~~l~~~~e~~l~~~ 338 (456)
T 3m4p_A 282 KIRKMNPHLKLPTRPFKRMTYADAIKYCNDHGILNKDKPFEYGEDISEKPERQMTDE 338 (456)
T ss_dssp HHHHHCTTCCCCCSSCEEEEHHHHHHHHHHHTCCSSSSCCCTTCCCCHHHHHHHHHH
T ss_pred hHhhcCcccccCCCCCeEeeHHHHHHHHHHcCCCccccCcchHHHHHHHHHHHHHHH
Confidence 011223 4689999999999844 47643 24556666655554443
|
| >4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-31 Score=292.87 Aligned_cols=198 Identities=21% Similarity=0.279 Sum_probs=166.2
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEccccc---------CCCCceeEEeeeEEEEeccCCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK---------TKKGELSIIPKKLTLLSPCLHMLP 395 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~---------~~~g~~El~~~~i~vl~~~~~~~P 395 (553)
|..+-++.+.+|++++... ..++++..++.|+.||+|.|+|+|.+ +++|++||.+++|+||++|. ++|
T Consensus 41 Fi~LrD~~g~iQvv~~~~~--~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~-~lP 117 (617)
T 4ah6_A 41 FLVLRDFDGLVQVIIPQDE--SAASVKKILCEAPVESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNACK-KLP 117 (617)
T ss_dssp EEEEECSSCEEEEECCCSS--SSHHHHHHHHHCCSSCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECBC-CCS
T ss_pred EEEEEeCCcCEEEEEeCCc--CcHHHHHHHhcCCCCCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCC
Confidence 6678888899999987632 22467788899999999999999975 34689999999999999998 888
Q ss_pred ccccC--CCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHH-hCCcEEeeCceeeccC-CCcceeeeeecCCCC
Q psy11418 396 HMHFG--VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLD-SLGFLEVETPMMNMIA-GGATAKPFVTHHNDL 471 (553)
Q Consensus 396 ~~~~~--~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~-~~~F~EV~TPiL~~~~-~ga~~~~~~t~~~~~ 471 (553)
++..+ ..++++|+++|||||| ++.++++|++||+++++||+||. ++||+||+||+|++++ |||+. |.++++++
T Consensus 118 ~~~~~~~~~~ee~Rl~~R~LdLR-~~~~~~~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st~~GA~~--F~v~~~~~ 194 (617)
T 4ah6_A 118 FEIKNFVKKTEALRLQYRYLDLR-SFQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGAKE--FLVPSREP 194 (617)
T ss_dssp SCTTTTCCSCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCCCSSSCC--CEEECSST
T ss_pred cccccccccChhhhccceeeeec-chHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCCCCCCcC--ceeccccC
Confidence 87654 4578999999999999 89999999999999999999996 7999999999999877 88874 45555578
Q ss_pred CcceeEEeChhHHHHHh-ccCcceEe---------------cCCCCCC-----------------------CCCcccCCC
Q psy11418 472 NMDLYMRIAPELYLKST-HGSYKVTY---------------HPDGPES-----------------------GSPVEIDFT 512 (553)
Q Consensus 472 ~~~~yL~~Spel~~k~l-~~~~~~~~---------------~~e~~~~-----------------------~~~~~~~~~ 512 (553)
|..+||++|||||+|++ +++++++| +|||+|+ ......++.
T Consensus 195 g~~~~L~qSpql~kq~l~v~g~~rvfqi~~~FR~E~~~t~r~pEFt~lE~e~af~d~~d~m~~~E~l~~~~~~~~~~~~~ 274 (617)
T 4ah6_A 195 GKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKDPVV 274 (617)
T ss_dssp TCEEECCSSTTHHHHHHHHTSCSEEEEEEEEECCCSSCSSSCSEEEEEEEEEESCCHHHHHHHHHHHHHHHSCSSSCCCC
T ss_pred CcccccccCHHHHHHHHHhcccCcEEEEEhheecccCCCCcCcceecceeeecCCCHHHHHHHHHHHHHHHHHHhcCccC
Confidence 89999999999999985 68887766 7778764 112234667
Q ss_pred CCceeeeHHHHHHHHh
Q psy11418 513 PPFRRLHMFPALEAAL 528 (553)
Q Consensus 513 ~~f~rit~~eA~~~~~ 528 (553)
.||+||||.|||.+|+
T Consensus 275 ~pf~r~ty~eA~~~yg 290 (617)
T 4ah6_A 275 VPFPTMTFAEVLATYG 290 (617)
T ss_dssp SSCCEEEHHHHHHHTS
T ss_pred CCceEeEHHHHHHHHc
Confidence 8999999999999996
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=291.53 Aligned_cols=223 Identities=37% Similarity=0.623 Sum_probs=181.8
Q ss_pred HhcccccCCCcccccccccccChHHHHH-hhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFAS-DLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKD 403 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~-~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~ 403 (553)
|..+-++.+.+|++++.... . ++.+. .++.|+.||+|.|+|.|.++++|++||.+++|+||++|..++|.+.++..+
T Consensus 84 F~~LrD~sg~iQvv~~~~~~-~-~~~~~~~~~~l~~g~~V~V~G~v~~~~~ge~ei~~~~i~vl~~a~~plP~k~~~~~~ 161 (504)
T 1e1o_A 84 FVTLQDVGGRIQLYVARDSL-P-EGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQD 161 (504)
T ss_dssp EEEEEETTEEEEEEEETTTS-S-TTHHHHTGGGCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECCSSCCCC-------
T ss_pred EEEEEECCeeEEEEEECCcC-C-HHHHHHHHhcCCCCCEEEEEEEEEecCCceEEEEEEEEEEecccCCCCCccccCCcC
Confidence 45667778889999876432 1 23344 678999999999999999999999999999999999998889988777788
Q ss_pred hhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhH
Q psy11418 404 KETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPEL 483 (553)
Q Consensus 404 ~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel 483 (553)
+++|+++||||||++|.++++|++||.++++||+||+++||+||+||+|++++|||++.+|.|++++||.++||+|||||
T Consensus 162 ~e~r~r~RyLdL~~~~~~~~~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~~~~~~~~~yL~~SpqL 241 (504)
T 1e1o_A 162 QEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPEL 241 (504)
T ss_dssp TTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETTTTEEEEECSCSHH
T ss_pred hhhhhhccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEeccCCCCceEEeccCHHH
Confidence 99999999999988999999999999999999999999999999999999888999999999998999999999999999
Q ss_pred HHHHh-ccCcceEe---------------cCCCCCCC----------------------------------CCcccCCCC
Q psy11418 484 YLKST-HGSYKVTY---------------HPDGPESG----------------------------------SPVEIDFTP 513 (553)
Q Consensus 484 ~~k~l-~~~~~~~~---------------~~e~~~~~----------------------------------~~~~~~~~~ 513 (553)
|+|+| +++++++| +|||+|+. ....++|..
T Consensus 242 ylk~L~v~G~~rVyeIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~dlm~l~E~li~~~~~~v~~~~~i~~~~~~i~~~~ 321 (504)
T 1e1o_A 242 YLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGK 321 (504)
T ss_dssp HHHHHHHHTCCEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSEEEETTEEEETTS
T ss_pred HHHHHhhcCCCcEEEEcccccCCCCCccccCceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCceeeeCCEeeccCC
Confidence 99996 56776655 78888640 112357888
Q ss_pred CceeeeHHHHHHHHhC-CCCCCCCCCChHHHHHHHhCCC
Q psy11418 514 PFRRLHMFPALEAALG-VKLPNPTEFDTPEANKFLSDPN 551 (553)
Q Consensus 514 ~f~rit~~eA~~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 551 (553)
||+||||.||+++++| +++... .+.+++.+++++.|
T Consensus 322 pf~rity~eAi~~~~~d~d~~~~--~~~~~~~~~~~~~g 358 (504)
T 1e1o_A 322 PFEKLTMREAIKKYRPETDMADL--DNFDAAKALAESIG 358 (504)
T ss_dssp CCEEEEHHHHHHHHSTTCCGGGG--GSHHHHHHHHHHTT
T ss_pred CceEEeHHHHHHHHcCCCCcccc--CCHHHHHHHHHHcC
Confidence 9999999999999999 876432 12355555655544
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-31 Score=270.05 Aligned_cols=132 Identities=21% Similarity=0.311 Sum_probs=123.1
Q ss_pred cccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccc--------cCCCCCcceeeccCCCCcceeeeeC
Q psy11418 195 RQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI--------AGGATAKPFVTHHNDLNMDLYMRIA 266 (553)
Q Consensus 195 ~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~--------~gga~a~~F~t~~~~~~~~~~L~~S 266 (553)
++||+||| |+ +++++++|+.|++.+|+||.++||+||+||+|.++ .|++ +++|.+. ++|.++||++|
T Consensus 1 ~~r~l~lr-~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~~--~~~~~~~L~~S 75 (294)
T 1nnh_A 1 MNAVEIIS-RE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEVE--IYGVKMRLTHS 75 (294)
T ss_dssp -CHHHHHT-SC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEEE--ETTEEEEECSC
T ss_pred CchHHhhh-cc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEEE--cCCCCEEeccC
Confidence 47999997 78 99999999999999999999999999999999887 6666 8999874 78999999999
Q ss_pred HHHHHHHHHHccCCcEEEEccccccCC--CCC-CccCCcceeeeEeccCCHHHHHHHHHHHHhccccc
Q psy11418 267 PELYLKMLVVGGLDRVYEVGRQFRNEG--IDL-THNPEFTTCEFYMAYADYNDLMHLTEDLISGRKED 331 (553)
Q Consensus 267 pql~lk~l~~~g~~rVfei~~~FR~E~--~~~-~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~ 331 (553)
||+|+|+++++|++|||+||||||+|+ +++ ||+|||||||+|++|.|++|+|+++|++++++++.
T Consensus 76 pe~~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~l~~~~e~l~~~l~~~ 143 (294)
T 1nnh_A 76 MILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRK 143 (294)
T ss_dssp SHHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 885 99999999999999999999999999999999643
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=278.01 Aligned_cols=216 Identities=20% Similarity=0.248 Sum_probs=172.8
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCC--CceeEEeeeEEEEeccCCCCCccccC--
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK--GELSIIPKKLTLLSPCLHMLPHMHFG-- 400 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~--g~~El~~~~i~vl~~~~~~~P~~~~~-- 400 (553)
|..+-++.+.+|++++... +.+..++.|+.||+|.|+|.+.++++ |++||.+++++||++|..++|++...
T Consensus 36 F~~lrD~~g~iQ~v~~~~~-----~~~~~~~~l~~~~~v~v~G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~ 110 (429)
T 1wyd_A 36 FIILRDKTGLGQVVVDKNS-----SAFGISQELTQESVIQVRGIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKV 110 (429)
T ss_dssp EEEEEETTEEEEEEECTTS-----TTHHHHTTCCTTCEEEEEEEEEECSSSGGGEEEEEEEEEEEECCCSSCSSCSSSCC
T ss_pred EEEEEECCeeEEEEEeCCh-----HHHHHHHhCCCCCEEEEEEEEEecCCCCccEEEEEeEEEEeccCCCCCCCCccccc
Confidence 4567778888999987532 33556689999999999999998874 59999999999999998789987664
Q ss_pred CCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeC
Q psy11418 401 VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIA 480 (553)
Q Consensus 401 ~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~S 480 (553)
..+.++|+++|||||| +|.+++++++||.++++||+||.++||+||+||+|+.+++++...+|.|. ++|.++||++|
T Consensus 111 ~~~~e~r~~~R~Ldlr-~~~~~~~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~~~e~~~~~f~~~--~~~~~~~L~~S 187 (429)
T 1wyd_A 111 KADIDTRLRERVLDLR-RQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVI--YFGKEAFLAQS 187 (429)
T ss_dssp CCCHHHHHHTHHHHHT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEEE--ETTEEEEECSC
T ss_pred cCChhHhhhccceecc-CHHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCEEEeeCCCCCceeEEEe--cCCceEEecCC
Confidence 3789999999999999 99999999999999999999999999999999999988833333334432 88999999999
Q ss_pred hhHHHHHhccCcceEe----------------cCCCCCCC-----C-------------------------------Ccc
Q psy11418 481 PELYLKSTHGSYKVTY----------------HPDGPESG-----S-------------------------------PVE 508 (553)
Q Consensus 481 pel~~k~l~~~~~~~~----------------~~e~~~~~-----~-------------------------------~~~ 508 (553)
||+|+|++++++.++| +|||+|+. . ...
T Consensus 188 pql~~~~~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~~~~~~~~~l~~~~~~ 267 (429)
T 1wyd_A 188 PQLYKELMAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYE 267 (429)
T ss_dssp CHHHHHHHHHHHSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCC
T ss_pred cHHHHHHHHhCcCceEEEcccccccCCccccccceeeEeeeeecCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcccc
Confidence 9999999877776654 56777530 0 011
Q ss_pred cCC-CCCceeeeHHHHHHHHh--CCCCCCCCCCChHHHHHHHh
Q psy11418 509 IDF-TPPFRRLHMFPALEAAL--GVKLPNPTEFDTPEANKFLS 548 (553)
Q Consensus 509 ~~~-~~~f~rit~~eA~~~~~--g~~~~~~~~~~~~~~~~~~~ 548 (553)
+++ ..||+||||.||++.+. |+++.+..+++.+....+.+
T Consensus 268 ~~~l~~pf~rity~eA~~~~~~~g~~~~~~~~l~~~~e~~l~~ 310 (429)
T 1wyd_A 268 PPEVKIPIKRLKYTEAIEILRSKGYNIKFGDDIGTPELRILNE 310 (429)
T ss_dssp CCCCCSSCEEEEHHHHHHHHHHSSCCCCTTSCCCHHHHHHHHH
T ss_pred cccCCCCccEEEHHHHHHHHHhcCCCcccCcccCcHHHHHHHH
Confidence 222 47999999999999884 77666666677766555544
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-31 Score=284.57 Aligned_cols=223 Identities=41% Similarity=0.616 Sum_probs=186.5
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCCh
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK 404 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~~ 404 (553)
|..+-++.+.+|++++.... .++.+..++.|+.||+|.|+|.|.++++|++||.+++|+||++|..++|.+.++..++
T Consensus 76 F~~LrD~sg~iQvv~~~~~~--~~~~~~~~~~l~~g~~v~V~G~v~~~~~ge~ei~~~~i~vl~~~~~plP~k~~~~~~~ 153 (493)
T 3a74_A 76 FAHIQDVTGQIQIYVRQDDV--GEQQYELFKISDLGDIVGVRGTMFKTKVGELSIKVSSYEFLTKALRPLPEKYHGLKDI 153 (493)
T ss_dssp EEEEEETTEEEEEEEEHHHH--HHHHHHHHHHCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECCSSCCCCC-----CH
T ss_pred EEEEEECCEeEEEEEECCcC--CHHHHHHHhcCCCCCEEEEEEEEEeCCCCcEEEEEEEEEEcccccCCCCccccCCCCH
Confidence 45677778889999875322 2345566688999999999999999999999999999999999988999887778889
Q ss_pred hhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhHH
Q psy11418 405 ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELY 484 (553)
Q Consensus 405 e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel~ 484 (553)
++|+++||||||++|.++++|++||.++++||+||.++||+||+||+|+++++|+++.+|.|++++||.++||+||||||
T Consensus 154 e~r~r~RyldL~~~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~~~~~~~~~yLr~SpqLy 233 (493)
T 3a74_A 154 EQRYRQRYLDLIMNPESKKTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELH 233 (493)
T ss_dssp HHHHHTHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTTTEEEEECSCSHHH
T ss_pred hhhhhcchhhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEecccCCCceeEEecCHHHH
Confidence 99999999999889999999999999999999999999999999999998888888889999888999999999999999
Q ss_pred HHHh-ccCcceEe---------------cCCCCCCC----------------------------------CCcccCCCCC
Q psy11418 485 LKST-HGSYKVTY---------------HPDGPESG----------------------------------SPVEIDFTPP 514 (553)
Q Consensus 485 ~k~l-~~~~~~~~---------------~~e~~~~~----------------------------------~~~~~~~~~~ 514 (553)
+|++ +++++++| +|||+|+. ....++|..|
T Consensus 234 lk~l~v~G~~rVyeig~~FR~E~~~~rH~pEFT~lE~e~af~d~~dlm~l~E~ll~~l~~~v~~~~~i~~~~~~i~~~~p 313 (493)
T 3a74_A 234 LKRLIVGGLEKVYEIGRVFRNEGISTRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTKIQYGEHLVDLTPE 313 (493)
T ss_dssp HHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSEEEETTEEEECCSS
T ss_pred HHHHhhcccCceEEECccccCCCCCcccCCceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHhCCceEeeCCEeeccCCC
Confidence 9996 67777765 78887640 1123578889
Q ss_pred ceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHhCCC
Q psy11418 515 FRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDPN 551 (553)
Q Consensus 515 f~rit~~eA~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 551 (553)
|+||||.||+++++|++++ .+++.+++.+++++.|
T Consensus 314 f~rity~eai~~~~~~d~~--~~~~~~~~~~~~~~~g 348 (493)
T 3a74_A 314 WRRLHMVDAIKEYVGVDFW--RQMSDEEARELAKEHG 348 (493)
T ss_dssp CEEEEHHHHHHHHTCCCTT--SCCCHHHHHHHHHHTT
T ss_pred cceeeHHHHHHHHhCCCCc--cccCHHHHHHHHHHcC
Confidence 9999999999999999873 2245677777776665
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=275.82 Aligned_cols=217 Identities=18% Similarity=0.204 Sum_probs=171.8
Q ss_pred HhcccccCCCccccccccccc-ChHHHHHhhcccCCccEEEEEcccccCC-------CCceeEEeeeEEEEeccCCCCCc
Q psy11418 325 ISGRKEDRNRPCVMANARMYQ-SEEEFASDLVKIKRGDIIGVTGSPGKTK-------KGELSIIPKKLTLLSPCLHMLPH 396 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~-~~e~~~~~~~~L~~gs~V~V~G~v~~~~-------~g~~El~~~~i~vl~~~~~~~P~ 396 (553)
|..+-++.+.+|++++..... ..++++..++.|+.||+|.|+|+|.+++ +|++||.+++|+||++|..++|+
T Consensus 57 Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~~~lP~ 136 (487)
T 1eov_A 57 FLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPI 136 (487)
T ss_dssp EEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCSSCSS
T ss_pred EEEEEECCccEEEEEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecccccCCc
Confidence 456777888999998753211 2356777889999999999999998876 47899999999999999888998
Q ss_pred cccC--------------CCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcc
Q psy11418 397 MHFG--------------VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGAT 460 (553)
Q Consensus 397 ~~~~--------------~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~ 460 (553)
+..+ ..++|+|+++|||||| +|.+++++++||.++++||+||.++||+||+||+|+.++ +||.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr-~~~~~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~ 215 (487)
T 1eov_A 137 LLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLR-TVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSS 215 (487)
T ss_dssp CHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSC
T ss_pred chhhcccccccccccccccCChhhhhhcceeecC-CHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCcc
Confidence 5431 2688999999999999 999999999999999999999999999999999999986 4455
Q ss_pred eeeeeecCCCCCcceeEEeChhHHHHHh-ccCcceEe----------------cCCCCCCC-------------------
Q psy11418 461 AKPFVTHHNDLNMDLYMRIAPELYLKST-HGSYKVTY----------------HPDGPESG------------------- 504 (553)
Q Consensus 461 ~~~~~t~~~~~~~~~yL~~Spel~~k~l-~~~~~~~~----------------~~e~~~~~------------------- 504 (553)
.|.+. +||.++||+||||||+|++ +++++++| .|||+|+.
T Consensus 216 ~f~~~----~~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~l 291 (487)
T 1eov_A 216 VFEVT----YFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSEL 291 (487)
T ss_dssp CCEEE----ETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHH
T ss_pred cceec----cCCccEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHH
Confidence 55554 6899999999999999997 66677655 46777530
Q ss_pred -----------------------CCcccCCCC--CceeeeHHHHHH--HHhCCCCCCCCCCChHHHHHH
Q psy11418 505 -----------------------SPVEIDFTP--PFRRLHMFPALE--AALGVKLPNPTEFDTPEANKF 546 (553)
Q Consensus 505 -----------------------~~~~~~~~~--~f~rit~~eA~~--~~~g~~~~~~~~~~~~~~~~~ 546 (553)
....+++.. ||.|++|.||++ +..|+++.+..+++.+....+
T Consensus 292 l~~l~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ri~~~ea~~~l~~~g~~~~~~~d~~~~~e~~l 360 (487)
T 1eov_A 292 FVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFL 360 (487)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHSCCCCCCCCTTCCCEEEEHHHHHHHHHHTTCCCCTTCCCCHHHHHHH
T ss_pred HHHHHHHHHhhchhHHHhhhhhcCCcceecccCCCeeEEEHHHHHHHHHHhCCCCCcccchhhHHHHHH
Confidence 001123333 899999999986 557888776666665544433
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-29 Score=269.99 Aligned_cols=218 Identities=17% Similarity=0.186 Sum_probs=171.9
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCC--CceeEEeeeEEEEeccCCCCCc--cccC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK--GELSIIPKKLTLLSPCLHMLPH--MHFG 400 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~--g~~El~~~~i~vl~~~~~~~P~--~~~~ 400 (553)
|..+-++.+.+|++++.... .++.+..++.|+.||+|.|+|.+.++++ |++||.+++++||++| .++|+ +..
T Consensus 36 F~~lrD~~g~iQ~v~~~~~~--~~~~~~~~~~l~~~~~v~v~G~v~~~~~~~~~~el~~~~~~vl~~~-~~~P~~~~~~- 111 (434)
T 1x54_A 36 FLWIRDSTGIVQAVVAKNVV--GEETFEKAKKLGRESSVIVEGIVKADERAPGGAEVHVEKLEVIQAV-SEFPIPENPE- 111 (434)
T ss_dssp EEEEEETTEEEEEEECHHHH--CHHHHHHHHTCCTTCEEEEEEEEEECTTSGGGEEEEEEEEEEEECC-SCCSSCSSGG-
T ss_pred EEEEEECCEEEEEEEECCcC--CHHHHHHHhcCCCCCEEEEEEEEEecCCCCccEEEEEeEEEEeecC-CCCCCccccc-
Confidence 45666788889999875321 2345667789999999999999998875 5999999999999999 78997 443
Q ss_pred CCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeC
Q psy11418 401 VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIA 480 (553)
Q Consensus 401 ~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~S 480 (553)
..+.|+|+++|||||| ++.+++++++||.++++||+||.++||+||+||+|+.+++++...+|.|. ++|.++||+||
T Consensus 112 ~~~~e~r~~~R~Ldlr-~~~~~~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~~~e~~~~~f~~~--~~~~~~~Lr~S 188 (434)
T 1x54_A 112 QASPELLLDYRHLHIR-TPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLK--YFDKYAYLSQS 188 (434)
T ss_dssp GSCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCSSCGGGCCEEE--ETTEEEEECSC
T ss_pred CCCHHHhhhceeeeec-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEeecCCCCceeEEEe--ecCCcEEeccC
Confidence 4788999999999999 99999999999999999999999999999999999988833333334442 88999999999
Q ss_pred hhHHHHHhccCcceEe----------------cCCCCCCC------------------------C------------Ccc
Q psy11418 481 PELYLKSTHGSYKVTY----------------HPDGPESG------------------------S------------PVE 508 (553)
Q Consensus 481 pel~~k~l~~~~~~~~----------------~~e~~~~~------------------------~------------~~~ 508 (553)
||+|+|++++++.++| +|||+++. . ...
T Consensus 189 pel~~~~~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~v~~~~~~~i~~~~~~ 268 (434)
T 1x54_A 189 AQLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDD 268 (434)
T ss_dssp SHHHHHHHHHHHSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSC
T ss_pred hHHHHHHHhcCccceEEEecceecCCCCCcccccEEEEeeEEEcCCCHHHHHHHHHHHHHHHHHHHhhhchhhhhhcCcc
Confidence 9999998766665544 56776530 0 011
Q ss_pred c----CCCCCceeeeHHHHHHHHh--CCCCCCCCCCChHHHHHHHhC
Q psy11418 509 I----DFTPPFRRLHMFPALEAAL--GVKLPNPTEFDTPEANKFLSD 549 (553)
Q Consensus 509 ~----~~~~~f~rit~~eA~~~~~--g~~~~~~~~~~~~~~~~~~~~ 549 (553)
+ .+..||+||||.||++.+. |+++.+..+++.+....+++.
T Consensus 269 ~~~~~~~~~pf~rity~ea~~~~~~~g~~~~~~~dl~~~~e~~l~~~ 315 (434)
T 1x54_A 269 LTTLKNTEPPFPRISYDEAIDILQSKGVNVEWGDDLGADEERVLTEE 315 (434)
T ss_dssp CHHHHTCCSSCCEEEHHHHHHHHHHTTCCCCTTCCCCHHHHHHHHTT
T ss_pred cccccccCCCCcEEEHHHHHHHHHhcCCCcccCCccChHHHHHHHHH
Confidence 1 1245999999999999886 666666667777766666553
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-30 Score=274.17 Aligned_cols=196 Identities=13% Similarity=0.167 Sum_probs=151.2
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEccccc-----CCCCceeEEeeeEEEEeccCC--CCCcc
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK-----TKKGELSIIPKKLTLLSPCLH--MLPHM 397 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~-----~~~g~~El~~~~i~vl~~~~~--~~P~~ 397 (553)
|..+-++.+.+|++++.. .. +.+. .. .|+.||+|.|+|+|.+ +++|++||.+++++||+++.. .+|+.
T Consensus 32 Fi~LrD~~g~iQvv~~~~-~~--~~~~-~~-~l~~~~~v~v~G~v~~~~~~~~~~g~~El~~~~~~vl~~~~p~~~~pl~ 106 (435)
T 2xgt_A 32 FFILRDGTGFLQVLLMDK-LC--QTYD-AL-TVNTECTVEIYGAIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVL 106 (435)
T ss_dssp EEEEECSSCEEEEEEEGG-GG--SSHH-HH-HCCTTCEEEEEEEEEECC------TTEEEEEEEEEEEECCCTTHHHHHC
T ss_pred EEEEEECCceEEEEECCc-ch--hHHH-Hh-cCCCCCEEEEEEEEEecCCCcCCCCcEEEEEEEEEEeecCCCccccccc
Confidence 456667888899998742 11 1222 22 6999999999999987 447899999999999998531 12322
Q ss_pred ccCCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcceeeeeecCCCCCcce
Q psy11418 398 HFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKPFVTHHNDLNMDL 475 (553)
Q Consensus 398 ~~~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~~~~~t~~~~~~~~~ 475 (553)
.+..++++|+++|||||| +|.++++|++||+++++||+||+++||+||+||+|++++ ||+.+|++. +||.++
T Consensus 107 -~~~~~~e~r~~~R~Ldlr-~~~~~~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~eG~~~~F~~~----~~g~~~ 180 (435)
T 2xgt_A 107 -NEEASVDKMLDNRHLVIR-GENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLD----YFGEQS 180 (435)
T ss_dssp -C--CCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCSSCTTSCCEEE----ETTEEE
T ss_pred -ccCCCHHHHhhCeeeeec-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccCCCchhceeec----cCCccc
Confidence 236789999999999998 999999999999999999999999999999999998876 555677665 899999
Q ss_pred eEEeChhHHHHHhccCcceEe----------------cCCCCCCC---------------------------CC------
Q psy11418 476 YMRIAPELYLKSTHGSYKVTY----------------HPDGPESG---------------------------SP------ 506 (553)
Q Consensus 476 yL~~Spel~~k~l~~~~~~~~----------------~~e~~~~~---------------------------~~------ 506 (553)
||++|||||+|++.++++++| +|||+|+. ..
T Consensus 181 ~L~~SpqLylq~l~~g~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~ 260 (435)
T 2xgt_A 181 FLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADEEAKKL 260 (435)
T ss_dssp EECSCSHHHHHHHHHHHCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred ccCCChHHHHHHhhhccCceEEEecceecCCCCccccccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhccccchhh
Confidence 999999999999876776655 66887640 00
Q ss_pred ---cccCCC---CCceeeeHHHHHHHHhCCC
Q psy11418 507 ---VEIDFT---PPFRRLHMFPALEAALGVK 531 (553)
Q Consensus 507 ---~~~~~~---~~f~rit~~eA~~~~~g~~ 531 (553)
..++|. .||+||||.||++.+.+..
T Consensus 261 ~~~~~~~~~~~~~pf~rity~ea~~~~~~~~ 291 (435)
T 2xgt_A 261 LEHINPKFQPPERPFLRMEYKDAIKWLQEHN 291 (435)
T ss_dssp HHHHSTTCCCCCSSCEEEEHHHHHHHHHHTT
T ss_pred hhhccccccccCCCceEEEHHHHHHHHHhcC
Confidence 023432 6999999999999776543
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.8e-29 Score=264.61 Aligned_cols=207 Identities=19% Similarity=0.218 Sum_probs=132.2
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccC-CccEEEEEcccccCC--CCceeEEeeeEEEEeccCCCCCccccC-
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIK-RGDIIGVTGSPGKTK--KGELSIIPKKLTLLSPCLHMLPHMHFG- 400 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~-~gs~V~V~G~v~~~~--~g~~El~~~~i~vl~~~~~~~P~~~~~- 400 (553)
|..+-++.+.+|++++. +.|+ .||+|.|+|++.+++ +|++||.+++++||++|..++|++...
T Consensus 33 F~~lrD~~g~iQ~v~~~-------------~~l~~~~~~v~v~G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~ 99 (422)
T 1n9w_A 33 FLLLRDRSGVVQVVTGG-------------LKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKE 99 (422)
T ss_dssp EEEEEETTEEEEEEEES-------------CCCCCTTCEEEEEEEEEECTTSTTSEEEEEEEEEEEECCCSCCC------
T ss_pred EEEEEECCEEEEEEEEc-------------cccCCCCCEEEEEEEEEecCCCCccEEEEEeEEEEeccCCcCCCCCcccc
Confidence 45566777888988863 6799 999999999998887 459999999999999998789976643
Q ss_pred --CCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEE
Q psy11418 401 --VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMR 478 (553)
Q Consensus 401 --~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~ 478 (553)
..++++|+++|||||| +|.+++++++||.++++||+||.++||+||+||+|+.+++|+...+|.+ +++|.++||+
T Consensus 100 ~~~~~~e~r~~~R~Ldlr-~~~~~~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~~e~~~~~f~~--~~~g~~~~L~ 176 (422)
T 1n9w_A 100 EWRANPDTLLEYRYVTLR-GEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGV--DYFEKRAYLA 176 (422)
T ss_dssp -----------CHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC----------------------------
T ss_pred ccCCCHHHHhhhhHHhhc-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeCCCCCceeEEE--eeCCCcEEee
Confidence 4688999999999999 9999999999999999999999999999999999998883333333443 2889999999
Q ss_pred eChhHHHHHhccCcceEe----------------cCCCCCC-----CC--------------------------------
Q psy11418 479 IAPELYLKSTHGSYKVTY----------------HPDGPES-----GS-------------------------------- 505 (553)
Q Consensus 479 ~Spel~~k~l~~~~~~~~----------------~~e~~~~-----~~-------------------------------- 505 (553)
+|||+|+|++++++.++| .|||+|+ ..
T Consensus 177 ~Spel~~~~l~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~l~~~~~~~~~~~i~~~ 256 (422)
T 1n9w_A 177 QSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLL 256 (422)
T ss_dssp --CHHHHHHHHHHHSEEEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHT
T ss_pred eCHHHHHHHHhhCCCceeEEeCceECCCCCCCcccceeEEeeeeeeCCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhc
Confidence 999999999876565544 6788763 10
Q ss_pred CcccCCC-CCceeeeHHHHHHHHhCC-CCCCCCCCChHHHHHHH
Q psy11418 506 PVEIDFT-PPFRRLHMFPALEAALGV-KLPNPTEFDTPEANKFL 547 (553)
Q Consensus 506 ~~~~~~~-~~f~rit~~eA~~~~~g~-~~~~~~~~~~~~~~~~~ 547 (553)
...+++. .||+||||.||++.+.+. ++.+..+++.+....+.
T Consensus 257 ~~~~~~~~~pf~rity~eA~~~~~~~~~~~~~~dl~~~~e~~l~ 300 (422)
T 1n9w_A 257 GATWPSFPQDIPRLTHAEAKRILKEELGYPVGQDLSEEAERLLG 300 (422)
T ss_dssp TCCCCCCSSSCCEEEHHHHHHHHHHTSCCCCCSSCCHHHHHHHH
T ss_pred CccccccCCCcceeEHHHHHHHHHhcCCcccccccCcHHHHHHH
Confidence 0112222 699999999999998633 45555566665554443
|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-22 Score=202.42 Aligned_cols=171 Identities=16% Similarity=0.268 Sum_probs=132.8
Q ss_pred ecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHH-----HHHHHHHHHHHhhhC
Q psy11418 154 SPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIV-----RAQIIAYVRRYLDSL 228 (553)
Q Consensus 154 ~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~-----rs~i~~~ir~fl~~~ 228 (553)
...+..+|++||++++|++|++|..++|.+. .+...++++||||+| ++.+.++++. ++++.+.+|++|.+.
T Consensus 18 ~~~~~~~~~~ei~~~~~~vl~~a~~~~P~~~---~~~~~~l~~r~l~~R-~~~~~~i~~~g~~~~~~~i~~~ir~~l~~~ 93 (290)
T 3qtc_A 18 SHGASAPALTKSQTDRLEVLLNPKDEISLNS---GKPFRELESELLSRR-KKDLQQIYAEERENYLGKLEREITRFFVDR 93 (290)
T ss_dssp ------CCCCHHHHHHHHHHCCTTCC----C---CSCHHHHHHHHHHHH-HHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred ccccCCCceEEEEhhhhhhhccCCCCCCCCc---chhhhhhhhHHHHhc-cchHHHHhccccccHHHHHHHHHHHHHHHC
Confidence 3456678999999999999999988888653 222348999999997 7999999999 999999999999999
Q ss_pred CeEEEecceecccc-----CCCCCcceeeccCCCCcceeee--eCHHHHHHHHHH----ccCCcEEEEccccccCCCCCC
Q psy11418 229 GFLEVETPMMNMIA-----GGATAKPFVTHHNDLNMDLYMR--IAPELYLKMLVV----GGLDRVYEVGRQFRNEGIDLT 297 (553)
Q Consensus 229 gF~EV~TPil~~~~-----gga~a~~F~t~~~~~~~~~~L~--~Spql~lk~l~~----~g~~rVfei~~~FR~E~~~~~ 297 (553)
||.||.||+|++.. +.....|+.....+++...+|| ++|+++...... .+..|+||||+|||+|..+.+
T Consensus 94 Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~p~rlfeiG~vFR~E~~~~~ 173 (290)
T 3qtc_A 94 GFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKE 173 (290)
T ss_dssp TCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCSSEEEEEEEEEECCCSCSSS
T ss_pred CCEEEECCceeeHHHHHhcCCCcCCchhhhheeeCCCeeEcccChHHHHHHHHHhhccCCCCeEEEEEcCEEecCCCCCc
Confidence 99999999997432 1111123322233556789999 999999554332 455799999999999988889
Q ss_pred ccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 298 HNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 298 H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
|++||||+|+++++. ++.++..++++++..+
T Consensus 174 ~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~~l 206 (290)
T 3qtc_A 174 HLEEFTMLVFWQMGSGCTRENLESIITDFLNHL 206 (290)
T ss_dssp CCSEEEEEEEEEESTTCCHHHHHHHHHHHHHHH
T ss_pred CcchheEEEEEEEcCChHHHHHHHHHHHHHHHc
Confidence 999999999999987 5999999999999877
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.2e-20 Score=189.70 Aligned_cols=126 Identities=23% Similarity=0.322 Sum_probs=92.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcceeeeeecCCCCC------cceeEEeChhHHHHH-hc
Q psy11418 418 NERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHHNDLN------MDLYMRIAPELYLKS-TH 489 (553)
Q Consensus 418 ~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~~~~~~t~~~~~~------~~~yL~~Spel~~k~-l~ 489 (553)
++ .+++|++||+++++||+||.++||+||+||+|++++ +||.+.||.|+ ||+ .++||+||||||+|+ ++
T Consensus 30 ~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~~--~~~~~~~~~~~~yL~~Spql~~k~l~~ 106 (345)
T 3a5y_A 30 SA-SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETR--FVGPGHSQGMNLWLMTSPEYHMKRLLV 106 (345)
T ss_dssp SS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEEE--ECCSTTSCCEEEEECSCSHHHHHHHHH
T ss_pred ch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEEE--ecCcccccCCCEeecCCHHHHHHHHHH
Confidence 54 889999999999999999999999999999999888 66788888876 554 789999999999996 47
Q ss_pred cCcceEe---------------cCCCCCCCC-----Cc-------------ccCCCCCceeeeHHHHHHHHhCCCCCCCC
Q psy11418 490 GSYKVTY---------------HPDGPESGS-----PV-------------EIDFTPPFRRLHMFPALEAALGVKLPNPT 536 (553)
Q Consensus 490 ~~~~~~~---------------~~e~~~~~~-----~~-------------~~~~~~~f~rit~~eA~~~~~g~~~~~~~ 536 (553)
++++++| +|||+|+.. .. .+.+ .||+||||.|||.+|+|+|.+..
T Consensus 107 ~g~~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~~-~~~~rity~ea~~~~~g~d~~~~- 184 (345)
T 3a5y_A 107 AGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC-PAAESLSYQQAFLRYLEIDPLSA- 184 (345)
T ss_dssp TTCCSEEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHCC-CCCEEEEHHHHHHHHTCCCTTCC-
T ss_pred cCCCcEEEEEcceeCCCCcccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHcC-CCCcEeeHHHHHHHHhCCCCCCC-
Confidence 7777755 777776410 00 0111 38999999999999999986542
Q ss_pred CCChHHHHHHHhCC
Q psy11418 537 EFDTPEANKFLSDP 550 (553)
Q Consensus 537 ~~~~~~~~~~~~~~ 550 (553)
+.+++.+++.+.
T Consensus 185 --~~~~l~~~~~~~ 196 (345)
T 3a5y_A 185 --DKTQLREVAAKL 196 (345)
T ss_dssp --C-----------
T ss_pred --CHHHHHHHHHHc
Confidence 334445444443
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-15 Score=156.10 Aligned_cols=81 Identities=15% Similarity=0.148 Sum_probs=68.5
Q ss_pred cccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeecc--------C-CCcceeeeeecCCCCCcceeEEe
Q psy11418 409 RQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI--------A-GGATAKPFVTHHNDLNMDLYMRI 479 (553)
Q Consensus 409 ~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~--------~-~ga~~~~~~t~~~~~~~~~yL~~ 479 (553)
+||||+|| ++ +++++++|+.++++||+||.++||+||+||+|+.+ . +||. +|.+. ++|.++||++
T Consensus 1 ~~r~l~lr-~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~a~--~f~~~--~~~~~~~L~~ 74 (294)
T 1nnh_A 1 MNAVEIIS-RE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGME--PAEVE--IYGVKMRLTH 74 (294)
T ss_dssp -CHHHHHT-SC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCCCC--CCEEE--ETTEEEEECS
T ss_pred CchHHhhh-cc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCcce--eEEEE--cCCCCEEecc
Confidence 48999999 88 99999999999999999999999999999999999 5 4444 44443 7899999999
Q ss_pred ChhHHHHHhc-cCcceE
Q psy11418 480 APELYLKSTH-GSYKVT 495 (553)
Q Consensus 480 Spel~~k~l~-~~~~~~ 495 (553)
|||+|+|++. +++.++
T Consensus 75 Spe~~~~~l~~~g~~rv 91 (294)
T 1nnh_A 75 SMILHKQLAIAMGLKKI 91 (294)
T ss_dssp CSHHHHHHHHHTTCCEE
T ss_pred ChHHHHHHHhhcCccce
Confidence 9999999973 335443
|
| >2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-11 Score=124.27 Aligned_cols=115 Identities=16% Similarity=0.103 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeecc--------CCCCcceeeeeCHHHHHHHHHHcc----CCcE
Q psy11418 215 AQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHH--------NDLNMDLYMRIAPELYLKMLVVGG----LDRV 282 (553)
Q Consensus 215 s~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~--------~~~~~~~~L~~Spql~lk~l~~~g----~~rV 282 (553)
+.+.+.+|++|...||.||++|.+.+...+..+..|...+ -+++...+||+|.--.+.++++.+ -.|+
T Consensus 56 ~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~e~~vLRtsl~p~ll~~l~~N~~~~~~ri 135 (294)
T 2rhq_A 56 TRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQARTMEKRNGQGPVKI 135 (294)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSSSSEEECSSSHHHHHHHHHHTTTCSCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEcCcceeeccCHHHHHHHHHhcCCCCCccE
Confidence 4567899999999999999999996532211111121111 122345679988888888888877 5699
Q ss_pred EEEccccccCCCCCCccCCcceeeeEecc--CCHHHHHHHHHHHHhccc
Q psy11418 283 YEVGRQFRNEGIDLTHNPEFTTCEFYMAY--ADYNDLMHLTEDLISGRK 329 (553)
Q Consensus 283 fei~~~FR~E~~~~~H~~EFt~lE~e~a~--~~~~~~m~~~e~li~~~~ 329 (553)
||||+|||+++.+.+|+|||+|||+++++ .|+.|++..+|.++..++
T Consensus 136 FEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l~ 184 (294)
T 2rhq_A 136 ICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLF 184 (294)
T ss_dssp EEEEEEECCCCCBTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEcCEEecCCCCCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 99999999988788899999999999998 589999999999998774
|
| >1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3e-10 Score=118.13 Aligned_cols=114 Identities=20% Similarity=0.144 Sum_probs=83.6
Q ss_pred HHHHHHHHHhhhCCeEEEecceeccccC--CC-----------CCcceeeccCCC----------CcceeeeeCHHHHHH
Q psy11418 216 QIIAYVRRYLDSLGFLEVETPMMNMIAG--GA-----------TAKPFVTHHNDL----------NMDLYMRIAPELYLK 272 (553)
Q Consensus 216 ~i~~~ir~fl~~~gF~EV~TPil~~~~g--ga-----------~a~~F~t~~~~~----------~~~~~L~~Spql~lk 272 (553)
.+.+.||++|...||.||.+|.+.+... .+ ..++|......- .....||.+.--.+-
T Consensus 105 ~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp~ll 184 (350)
T 1b7y_A 105 LMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQV 184 (350)
T ss_dssp HHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTHHHH
T ss_pred HHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchHHHH
Confidence 4568899999999999999999964211 00 022343321111 134567765544444
Q ss_pred HHHHccC--CcEEEEccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhccc
Q psy11418 273 MLVVGGL--DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGRK 329 (553)
Q Consensus 273 ~l~~~g~--~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~~ 329 (553)
+++..+- -|+|+||+|||+|..|.+|+|||+|+|++.++. |+.|++..++.+++.++
T Consensus 185 r~l~~~~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~lf 245 (350)
T 1b7y_A 185 RYMVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALF 245 (350)
T ss_dssp HHHHHCCSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHHS
T ss_pred HHHHhcCCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhhc
Confidence 6666543 389999999999988889999999999999987 89999999999999884
|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.9e-11 Score=123.01 Aligned_cols=111 Identities=13% Similarity=0.209 Sum_probs=84.7
Q ss_pred CCCCceeEEeeeEEEEeccCCCCCccccCCCChhhhccccceeeecChHHHHHHHH-----HHHHHHHHHHHHHhCCcEE
Q psy11418 372 TKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIV-----RAQIIAYVRRYLDSLGFLE 446 (553)
Q Consensus 372 ~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~~e~~~~~R~L~lR~~~~~~~~l~~-----Rs~i~~~iR~f~~~~~F~E 446 (553)
..+|++||.+++|+||++|..++|++..+. ..++++|||++| ++.+.++++. ++++.+.||++|.++||.|
T Consensus 22 ~~~~~~ei~~~~~~vl~~a~~~~P~~~~~~---~~~l~~r~l~~R-~~~~~~i~~~g~~~~~~~i~~~ir~~l~~~Gf~E 97 (290)
T 3qtc_A 22 SAPALTKSQTDRLEVLLNPKDEISLNSGKP---FRELESELLSRR-KKDLQQIYAEERENYLGKLEREITRFFVDRGFLE 97 (290)
T ss_dssp --CCCCHHHHHHHHHHCCTTCC----CCSC---HHHHHHHHHHHH-HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCEE
T ss_pred CCCceEEEEhhhhhhhccCCCCCCCCcchh---hhhhhhHHHHhc-cchHHHHhccccccHHHHHHHHHHHHHHHCCCEE
Confidence 347999999999999999988889876442 348999999999 9999999999 9999999999999999999
Q ss_pred eeCceeeccC-C---Cc-ceeeeeecCCCCCcceeEE--eChhHHHH
Q psy11418 447 VETPMMNMIA-G---GA-TAKPFVTHHNDLNMDLYMR--IAPELYLK 486 (553)
Q Consensus 447 V~TPiL~~~~-~---ga-~~~~~~t~~~~~~~~~yL~--~Spel~~k 486 (553)
|+||+|++.. . +. .--|+.....+|+...+|+ +||+++..
T Consensus 98 V~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~LR~slsp~L~~~ 144 (290)
T 3qtc_A 98 IKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLTPNLYNY 144 (290)
T ss_dssp ECCCSEEETHHHHHTTCCTTSSGGGGCCEETTTEEECSCSHHHHHHH
T ss_pred EECCceeeHHHHHhcCCCcCCchhhhheeeCCCeeEcccChHHHHHH
Confidence 9999999775 1 10 0011111123556789999 88999943
|
| >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-09 Score=110.19 Aligned_cols=118 Identities=20% Similarity=0.242 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHhhhCCeEEEecceecccc----CCCCCc-ceeeccCCCCcceeeee--CHHHHH-HHHHHccCC---cE
Q psy11418 214 RAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGATAK-PFVTHHNDLNMDLYMRI--APELYL-KMLVVGGLD---RV 282 (553)
Q Consensus 214 rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga~a~-~F~t~~~~~~~~~~L~~--Spql~l-k~l~~~g~~---rV 282 (553)
..++.+.+|++|...||.||.||.|.+.. .|...+ .+....+..+.+++||. +|.+.. -+.....-+ |+
T Consensus 73 ~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~~~~Plrl 152 (288)
T 3dsq_A 73 LLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPIRI 152 (288)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEeecccccchhhhhcChHHHHHHHHHHHhCCCCCEEE
Confidence 46889999999999999999999996421 111111 22222234456789994 465542 112222233 89
Q ss_pred EEEccccccCCCCCCccCCcceeeeEeccC----CHHHHHHHHHHHHhcccccCC
Q psy11418 283 YEVGRQFRNEGIDLTHNPEFTTCEFYMAYA----DYNDLMHLTEDLISGRKEDRN 333 (553)
Q Consensus 283 fei~~~FR~E~~~~~H~~EFt~lE~e~a~~----~~~~~m~~~e~li~~~~~~~~ 333 (553)
|++|+|||+|..+..|.+||+|+|++.... ++.++..+++++++.+ ++.
T Consensus 153 feiG~vFR~E~~~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~L--Gl~ 205 (288)
T 3dsq_A 153 FEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAA--GIR 205 (288)
T ss_dssp EEEEEEECSCCSSSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHH--TCC
T ss_pred EEEeeEEecCCCCCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHc--CCC
Confidence 999999999999999999999999998775 4889999999999888 553
|
| >1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-07 Score=98.72 Aligned_cols=130 Identities=16% Similarity=0.100 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceeccc-------cC-C-C-CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC-
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMI-------AG-G-A-TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL- 279 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-------~g-g-a-~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~- 279 (553)
.+.+..|.+.+|+.|...||.||.||++.+. .| + . ..+.|.. .+.-|..+.||.-.....-++++...
T Consensus 36 ~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~-~D~~g~~l~LRpd~T~~~aR~~~~~~~ 114 (344)
T 1z7m_A 36 VKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQF-IKHEGQSITLRYDFTLPLVRLYSQIKD 114 (344)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEE-ECTTCCEEEECCCSHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEE-ECCCCCEEecCCCCcHHHHHHHHhcCC
Confidence 4678899999999999999999999999532 12 1 1 2244432 24567889999777777777665532
Q ss_pred ---CcEEEEccccccCCCCCCccCCcceeeeEeccCCH----HHHHHHHHHHHhcccccCCCccccccccc
Q psy11418 280 ---DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADY----NDLMHLTEDLISGRKEDRNRPCVMANARM 343 (553)
Q Consensus 280 ---~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~----~~~m~~~e~li~~~~~~~~~iqv~~n~r~ 343 (553)
-|.|+||++||+|.++..|..||+|+++|.-..+- .+++.++.++++.+ ++...++..|.+.
T Consensus 115 ~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~~~~aDaEvi~l~~~~l~~l--gl~~~~i~l~~~g 183 (344)
T 1z7m_A 115 STSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQL--GLNKTVFEIGSAK 183 (344)
T ss_dssp CCCEEEEEEEECCCCCC-------CCEEEEEEEESSCHHHHHHHHHHHHHHHHHHH--TCSSEEEEEEEHH
T ss_pred CCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcCCCcHHHHHHHHHHHHHHHHC--CCCcEEEEECCHH
Confidence 39999999999998888899999999999987752 58888888888887 6666777777653
|
| >3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.7e-07 Score=99.35 Aligned_cols=131 Identities=14% Similarity=0.133 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceeccc-----cCCC-CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC-----
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMI-----AGGA-TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL----- 279 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-----~gga-~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~----- 279 (553)
.+++..|.+.+|+.|..+||.||.||++... .|+. ..+.|.. .+.-|..+.||.-.....-++++..+
T Consensus 24 ~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f-~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~~ 102 (400)
T 3od1_A 24 YKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKL-LDQQGNTLVLRPDMTAPIARLVASSLKDRAY 102 (400)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEE-ECTTSCEEEECSCSHHHHHHHHHHHCSSSCS
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEE-ECCCCCEEEECCCCHHHHHHHHHhhcccCCC
Confidence 4678899999999999999999999999432 1221 2234443 24557788899776666666655432
Q ss_pred -CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCcccccccccc
Q psy11418 280 -DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANARMY 344 (553)
Q Consensus 280 -~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~ 344 (553)
-|.|++|+|||+|.+...|..||+|+++|.-..+ -.+++.++-++++.+ ++...++..|.+.+
T Consensus 103 P~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~~l--gl~~~~i~l~~~~i 170 (400)
T 3od1_A 103 PLRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDGTASADGEVIALMIAALKRA--GLSEFKVAIGHVGY 170 (400)
T ss_dssp CEEEEEEEEEECCCC---CCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHT--TCCSEEEEEEEHHH
T ss_pred CeEEEEEcCEEeCCCCCCCCCCccEEeEEEEECCCChHhHHHHHHHHHHHHHHC--CCCceEEEecCHHH
Confidence 2999999999999888889999999999997764 357888888888887 66677788877653
|
| >3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.9e-07 Score=100.62 Aligned_cols=131 Identities=15% Similarity=0.156 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceecccc------CCC-CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC----
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA------GGA-TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL---- 279 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~------gga-~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~---- 279 (553)
.+++..|.+.+|+.|...||.||.||++...+ |.. ..+.|.. .+.-|..+.||.-.....-++++...
T Consensus 43 ~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f-~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~ 121 (456)
T 3lc0_A 43 MRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNF-ITKGGHRVALRPEMTPSLARLLLGKGRSLL 121 (456)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEE-ECSSSCEEEECSCSHHHHHHHHHHSCTTCC
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEE-EcCCCCEEecCCcCHHHHHHHHHhcCcccC
Confidence 36788999999999999999999999995321 221 1234432 24567788899777666666665532
Q ss_pred --CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccC--CCcccccccccc
Q psy11418 280 --DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDR--NRPCVMANARMY 344 (553)
Q Consensus 280 --~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~--~~iqv~~n~r~~ 344 (553)
-|.|+||+|||+|.+...|..||+|+++|.-..+ ..+++.++.+++..+ ++ +..++..|.+.+
T Consensus 122 ~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~l--gl~~~~~~i~in~~~i 192 (456)
T 3lc0_A 122 LPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSL--GLSSKDVGIKVNSRKV 192 (456)
T ss_dssp SSEEEEECCEEECCCC-----CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHHT--TCCTTTEEEEEEEHHH
T ss_pred CCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHHc--CCCCCceEEEEcCHHH
Confidence 3899999999999988889999999999997653 357888888888887 66 567788877543
|
| >3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.2e-07 Score=100.44 Aligned_cols=131 Identities=15% Similarity=0.201 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceec------cccCCCCCc-ceeeccCC---------------CCcceeeeeCH
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMN------MIAGGATAK-PFVTHHND---------------LNMDLYMRIAP 267 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~------~~~gga~a~-~F~t~~~~---------------~~~~~~L~~Sp 267 (553)
-...|..|.+.+|+.|..+||.||.||++. .. |....+ .|... +. -+..+.||.-.
T Consensus 25 ~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~-G~~~ke~m~~~~-d~~~~g~~~~~~~~~~~~g~~l~LRpd~ 102 (465)
T 3net_A 25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAK-GNQGDNIIYGLE-PILPPNRQAEKDKSGDTGSEARALKFDQ 102 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGG-GCC--CBEEEEE-EEC----------------CCEEECSCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhcc-CCCCccceEEEe-cccccccccccccccCCCCCEEEeCCCC
Confidence 346788999999999999999999999993 23 422223 45432 22 26788999777
Q ss_pred HHHHHHHHHccC------CcEEEEccccccCCCCCCccCCcceeeeEeccCC------HHHHHHHHHHHHhcccccCCCc
Q psy11418 268 ELYLKMLVVGGL------DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD------YNDLMHLTEDLISGRKEDRNRP 335 (553)
Q Consensus 268 ql~lk~l~~~g~------~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~------~~~~m~~~e~li~~~~~~~~~i 335 (553)
....-++++... -|.|++|+|||.|.....|..||+|+++|.-..+ -.|++.++-++++.+ ++...
T Consensus 103 T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~l~~~~l~~l--gl~~~ 180 (465)
T 3net_A 103 TVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAV--NIGDF 180 (465)
T ss_dssp HHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHH--TCSCE
T ss_pred hHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECCCCccchhhHHHHHHHHHHHHHc--CCCce
Confidence 777766655432 2999999999999988889999999999987653 236999999999888 67778
Q ss_pred ccccccccc
Q psy11418 336 CVMANARMY 344 (553)
Q Consensus 336 qv~~n~r~~ 344 (553)
++..|.+.+
T Consensus 181 ~i~in~~~~ 189 (465)
T 3net_A 181 VIRINNRKV 189 (465)
T ss_dssp EEEEEEHHH
T ss_pred EEEECCHHH
Confidence 888886543
|
| >1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=5e-07 Score=96.64 Aligned_cols=130 Identities=12% Similarity=0.141 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc------cCCC-CCcceeeccCCCCcceeeeeCHHHHHHHHHHcc----
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI------AGGA-TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG---- 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~------~gga-~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g---- 278 (553)
-.+++..|.+.+|+.|...||.||.||++.+. .|.. ..+.|.. .+.-|..+.||.-.....-++++..
T Consensus 19 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~-~D~~g~~l~LrPd~t~~~aR~~~~~~~~~ 97 (434)
T 1wu7_A 19 DMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSF-VDKGGREVTLIPEATPSTVRMVTSRKDLQ 97 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEE-ECTTSCEEEECSCSHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEE-ECCCCCEEEeCCCChHHHHHHHHhcCCCC
Confidence 34688899999999999999999999999642 2221 1234432 2456788999987777777766643
Q ss_pred C-CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCC-cccccccc
Q psy11418 279 L-DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNR-PCVMANAR 342 (553)
Q Consensus 279 ~-~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~-iqv~~n~r 342 (553)
+ -|.|+||++||+|.+...+..||+|+++|.-..+ ..+++.++.+++..+ +++. ..+..|.+
T Consensus 98 lP~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~~~~ad~E~i~~~~~~l~~l--gl~~~~~i~l~~~ 165 (434)
T 1wu7_A 98 RPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILDRL--GLQDIYEIRINSR 165 (434)
T ss_dssp SSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHT--TTTTSEEEEEEEH
T ss_pred CCeEEEEEcCeecCCCCCCCCccceEEeeEEEEcCCChHhhHHHHHHHHHHHHHc--CCCCceEEEECCh
Confidence 2 3999999999999887778999999999998765 256777777777776 5544 56666643
|
| >1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=2e-07 Score=99.09 Aligned_cols=129 Identities=11% Similarity=0.122 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc------cCCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHc--
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI------AGGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG-- 277 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~------~gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~-- 277 (553)
-.+++..|.+.+|+.|...||.||.||+|.+. .||. .-+.|.. .+.-|..++||.-.+...-++++.
T Consensus 15 ~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~-~D~~g~~~~Lrp~~t~~~~r~~~~~~ 93 (420)
T 1qe0_A 15 DSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTF-KDKGDRSITLRPEGTAAVVRSYIEHK 93 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEE-CHHHHCCEEECSCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEE-EcCCCCEEEeCCCChHHHHHHHHhcc
Confidence 34688999999999999999999999999642 1221 1133432 122356789997766666555542
Q ss_pred -----cC-CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCccccccc
Q psy11418 278 -----GL-DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANA 341 (553)
Q Consensus 278 -----g~-~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~ 341 (553)
.+ -|+|++|+|||+|.....|..||+|+|+|....+ -.+++.++.+++..+ ++....+..|.
T Consensus 94 ~~~~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~~l--gl~~~~i~l~~ 165 (420)
T 1qe0_A 94 MQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSF--GLKHLKLVINS 165 (420)
T ss_dssp GGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHHT--TCCCEEEEEEE
T ss_pred ccccCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCCCchhHHHHHHHHHHHHHHc--CCCceEEEEcc
Confidence 22 3999999999999877778999999999998774 267888888888877 55555566654
|
| >1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.4e-07 Score=98.07 Aligned_cols=127 Identities=20% Similarity=0.202 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHcc---
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG--- 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g--- 278 (553)
-.+++..|.+.+|+.|.+.||.||.||+|.+.+ +|- .-+.|. .+.-+.+++||...+...-+++...
T Consensus 29 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~--~d~~~~~~~LrP~~~~~~~~~~~~~~~s 106 (401)
T 1evl_A 29 GWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT--TSSENREYCIKPMNCPGHVQIFNQGLKS 106 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCE--EEETTEEEEECSCSHHHHHHHHTSSCCB
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEe--EecCCceEEEcCCCCHHHHHHHHhhhhh
Confidence 346888999999999999999999999996432 221 123444 2344678999988877776665533
Q ss_pred ---C-CcEEEEccccccCCCC--CC--ccCCcceeeeEeccCC-------HHHHHHHHHHHHhcccccCCCccccccc
Q psy11418 279 ---L-DRVYEVGRQFRNEGID--LT--HNPEFTTCEFYMAYAD-------YNDLMHLTEDLISGRKEDRNRPCVMANA 341 (553)
Q Consensus 279 ---~-~rVfei~~~FR~E~~~--~~--H~~EFt~lE~e~a~~~-------~~~~m~~~e~li~~~~~~~~~iqv~~n~ 341 (553)
+ -|+|+||+|||+|... .. +..||+|+|+|. |.+ +++++++..+++..+ ++....+..+.
T Consensus 107 ~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~-f~~~~~~~~e~~e~i~~~~~~~~~l--gl~~~~~~~~~ 181 (401)
T 1evl_A 107 YRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDEVNGCIRLVYDMYSTF--GFEKIVVKLST 181 (401)
T ss_dssp GGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHHHHHHHTT--TCSCCEEEEEC
T ss_pred hhhCChhhccccceecCCCCcccccccccCcEEecceEE-eCCHHHHHHHHHHHHHHHHHHHHHc--CCCceEEEEec
Confidence 2 2999999999999973 23 889999999995 554 224666777777665 44334444443
|
| >4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.48 E-value=3e-07 Score=99.42 Aligned_cols=131 Identities=14% Similarity=0.158 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc------CCC----CCcceeeccCCC-CcceeeeeCHHHHHHHHHHcc
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA------GGA----TAKPFVTHHNDL-NMDLYMRIAPELYLKMLVVGG 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~------gga----~a~~F~t~~~~~-~~~~~L~~Spql~lk~l~~~g 278 (553)
-.+++..|.+.+|+.|..+||.||.||+|...+ |.. ..+.|.. .+.- |..+.||.-.....-++++..
T Consensus 45 ~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~-~D~~~g~~l~LRPd~t~~~ar~~~~~ 123 (467)
T 4e51_A 45 DAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSF-VDALNGENLTLRPENTAAVVRAAIEH 123 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEE-ECTTTCCEEEECSCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEE-ecCCCCCEEEeCcccHHHHHHHHHHc
Confidence 346889999999999999999999999995321 321 1234533 2344 778999977777776665532
Q ss_pred -C-----CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCccccccccc
Q psy11418 279 -L-----DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANARM 343 (553)
Q Consensus 279 -~-----~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~ 343 (553)
. -|.|++|+|||+|.+...+..||+|+++|.-..+ ..+++.++.++++.+ ++...++..|.+.
T Consensus 124 ~~~~~lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~~l--Gl~~~~i~in~~g 196 (467)
T 4e51_A 124 NMLYDGPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWEDL--GLTGIKLEINSLG 196 (467)
T ss_dssp TTTTTSCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHHHH--TCCCEEEEEEECC
T ss_pred ccccCCCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCCChHHHHHHHHHHHHHHHHc--CCCceEEEEeCCC
Confidence 1 3999999999999988888999999999987653 367888998888888 6766777777643
|
| >3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.1e-07 Score=94.83 Aligned_cols=131 Identities=9% Similarity=0.047 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceeccc-----cCCC-C-CcceeeccCCCCcceeeeeCHHHHHHHHHHcc-----
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMI-----AGGA-T-AKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG----- 278 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-----~gga-~-a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g----- 278 (553)
.+++..|...+|+.|..+||.||.||++... .|+. . .+.|.. .+.-|..+.||.-.....-++++..
T Consensus 37 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~-~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~ 115 (373)
T 3rac_A 37 AKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRL-FDGGGDAVALRPEMTPSIARMAAPRVAAGR 115 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBC-CCCSSSCEEECSSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEE-ECCCCCEEEECCcCHHHHHHHHHhccccCC
Confidence 4578889999999999999999999999532 1221 1 234432 2445778889976655555555432
Q ss_pred -CCcEEEEccccccCCC------CCCccCCcceeeeEeccCC-----HHHHHHHHHHHHhcccccCCCcccccccccc
Q psy11418 279 -LDRVYEVGRQFRNEGI------DLTHNPEFTTCEFYMAYAD-----YNDLMHLTEDLISGRKEDRNRPCVMANARMY 344 (553)
Q Consensus 279 -~~rVfei~~~FR~E~~------~~~H~~EFt~lE~e~a~~~-----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~ 344 (553)
--|.|+||++||+|.. ...|..||+|+++|.-..+ -.+++.++-+++..+ ++...++..|.+.+
T Consensus 116 ~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~~l--gl~~~~i~l~~~~i 191 (373)
T 3rac_A 116 TPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASAAA--GVRHHRIVVSHARL 191 (373)
T ss_dssp CCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHH--TCCSCEEEEEETTH
T ss_pred CCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHHHHHHHHHHHHHc--CCCceEEEecCHHH
Confidence 2499999999999988 6678899999999997654 157888888888887 67677788877654
|
| >2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=3.4e-07 Score=98.77 Aligned_cols=107 Identities=16% Similarity=0.159 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeC---HHHHHHHHHHc
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIA---PELYLKMLVVG 277 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~S---pql~lk~l~~~ 277 (553)
.-.+++.+|.+.+|+.|...||.||.||+|.+.+ +|. .-+.|.. .+.-+.+++||.. +-..+-+..+.
T Consensus 65 ~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~-~d~~~~~~~LrPt~ee~t~~i~r~~~~ 143 (458)
T 2i4l_A 65 LGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRI-ADRHKRELLYGPTNEEMITEIFRAYIK 143 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEE-ECTTCCEEEECSCCHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEE-EeCCCCeEEECCCChHHHHHHHHHHHh
Confidence 3467899999999999999999999999996432 221 1233432 2445788999973 22233333333
Q ss_pred cC----CcEEEEccccccC-CCCCC--ccCCcceeeeEeccCCHHH
Q psy11418 278 GL----DRVYEVGRQFRNE-GIDLT--HNPEFTTCEFYMAYADYND 316 (553)
Q Consensus 278 g~----~rVfei~~~FR~E-~~~~~--H~~EFt~lE~e~a~~~~~~ 316 (553)
.. -|+|+||+|||+| ..... +..||+|+|+|....+..+
T Consensus 144 s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ 189 (458)
T 2i4l_A 144 SYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAG 189 (458)
T ss_dssp BGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHH
T ss_pred hccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHH
Confidence 33 3999999999999 44334 8899999999998766443
|
| >1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.2e-06 Score=93.15 Aligned_cols=128 Identities=19% Similarity=0.244 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceecccc----C-CC-----CCcceeeccCCCCcceeeeeCHHHHHHHHHHcc-C
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----G-GA-----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG-L 279 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----g-ga-----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g-~ 279 (553)
.+++..|.+.+|+.|...||.||.||++.+.+ + |. .-+.|.. .+.-|..+.||.-.....-++++.. +
T Consensus 17 ~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~-~D~~g~~l~Lrpd~t~~~ar~~~~~~~ 95 (421)
T 1h4v_B 17 LRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTF-QDRGGRSLTLRPEGTAAMVRAYLEHGM 95 (421)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEE-ECCCCCEEeeCCcchHHHHHHHHhccc
Confidence 46788999999999999999999999996421 1 22 1134433 2456788999977766666655532 2
Q ss_pred ------CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCccccccc
Q psy11418 280 ------DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANA 341 (553)
Q Consensus 280 ------~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~ 341 (553)
-|.|+||++||+|.....+..||+|+++|.-..+ ..+++.++.+++..+ ++....+..|.
T Consensus 96 ~~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~~~~ad~e~i~~~~~~l~~l--gl~~~~i~i~~ 165 (421)
T 1h4v_B 96 KVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKEL--GLRRLKVKLSS 165 (421)
T ss_pred cccCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCCChhhhHHHHHHHHHHHHHc--CCCceEEEEcC
Confidence 3999999999999877778999999999997764 236777777777776 55556666665
|
| >3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.36 E-value=8.1e-07 Score=91.36 Aligned_cols=114 Identities=19% Similarity=0.239 Sum_probs=79.3
Q ss_pred HHHHHHHHHhhhCCeEEEecceeccccCCCCC------cceee--ccCCCCcceeeeeCHHHHHHHHHHccCC--cEEEE
Q psy11418 216 QIIAYVRRYLDSLGFLEVETPMMNMIAGGATA------KPFVT--HHNDLNMDLYMRIAPELYLKMLVVGGLD--RVYEV 285 (553)
Q Consensus 216 ~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a------~~F~t--~~~~~~~~~~L~~Spql~lk~l~~~g~~--rVfei 285 (553)
.+.+.||++|...||.|+.+|.+.+..-.-.+ .|-.. ..-+.+....||.+.--.+-+.+..+-. |+|++
T Consensus 111 ~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~e~~vLRThtsp~~lr~l~~~~~pirifei 190 (327)
T 3pco_A 111 RTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFDTTRLLRTQTSGVQIRTMKAQQPPIRIIAP 190 (327)
T ss_dssp HHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSSSSCEECSCTHHHHHHHHTTCCSSCCBCCE
T ss_pred HHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeCCCceecccCCHHHHHHHHhCCCCeeEEee
Confidence 35688999999999999999988543211000 01000 0012334456885543333444555444 99999
Q ss_pred ccccccCCCCCCccCCcceeeeEecc--CCHHHHHHHHHHHHhcccc
Q psy11418 286 GRQFRNEGIDLTHNPEFTTCEFYMAY--ADYNDLMHLTEDLISGRKE 330 (553)
Q Consensus 286 ~~~FR~E~~~~~H~~EFt~lE~e~a~--~~~~~~m~~~e~li~~~~~ 330 (553)
|+|||++ .|.+|+|+|+|+|..... .++.|+...+|.+++.++.
T Consensus 191 GrVyR~d-~d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~lfg 236 (327)
T 3pco_A 191 GRVYRND-YDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFE 236 (327)
T ss_dssp ECCBCSC-CBTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHHHC
T ss_pred ccEEecC-CCcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHHhC
Confidence 9999998 688999999999988774 4799999999999999853
|
| >4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=8.7e-07 Score=96.94 Aligned_cols=132 Identities=17% Similarity=0.258 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc-----cCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccC---Cc
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI-----AGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL---DR 281 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-----~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~---~r 281 (553)
-.++|..|.+.+|+.|..+||.||.||++.+. ..|...+...+..+.-|..+.||.-.....-|+++..- -|
T Consensus 80 ~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D~~g~~l~LRPd~T~~~aR~~~~~~~~p~k 159 (517)
T 4g85_A 80 QMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNIK 159 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCCTTSCCEEECSCSHHHHHHHHHHTTCSCEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEECCCCCEEEeCCcCcHHHHHHHHhCCCCCce
Confidence 45788999999999999999999999999532 12222222222335567888999755555555544321 28
Q ss_pred EEEEccccccCCCCC--CccCCcceeeeEeccC-C----HHHHHHHHHHHHhcccccCCCccccccccc
Q psy11418 282 VYEVGRQFRNEGIDL--THNPEFTTCEFYMAYA-D----YNDLMHLTEDLISGRKEDRNRPCVMANARM 343 (553)
Q Consensus 282 Vfei~~~FR~E~~~~--~H~~EFt~lE~e~a~~-~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~ 343 (553)
.|+||++||.|.... .|.-||+|+++|.... + ..+++.++-++++.+ +++...+..|.+.
T Consensus 160 ~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~l--gl~~~~i~in~~~ 226 (517)
T 4g85_A 160 RYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSL--QIGDFLVKVNDRR 226 (517)
T ss_dssp EEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHHH--CCCCEEEEEEEHH
T ss_pred eEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHhh--cCCcccccccchh
Confidence 999999999997753 5889999999998764 2 357888888888887 6777777777643
|
| >1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-06 Score=92.94 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceeccc-----c-CCCC----CcceeeccCCCCcceeeeeCHHHHHHHHHHcc--
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMI-----A-GGAT----AKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG-- 278 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-----~-gga~----a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g-- 278 (553)
.+++..|.+.+|+.|...||.||.||++.+. . |... .+.|.. .+.-|..+.||.-.....-++++..
T Consensus 18 ~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~-~D~~g~~l~Lrpd~t~~~aR~~~~~~~ 96 (423)
T 1htt_A 18 TAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTF-EDRNGDSLTLRPEGTAGCVRAGIEHGL 96 (423)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEE-ECTTSCEEEECSCSHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEE-EcCCCCEEEeCCCchHHHHHHHHhccc
Confidence 4678899999999999999999999999643 1 3211 244543 2456788999977766666665522
Q ss_pred ----CCcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccC-CCccccccc
Q psy11418 279 ----LDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDR-NRPCVMANA 341 (553)
Q Consensus 279 ----~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~-~~iqv~~n~ 341 (553)
--|.|+||++||+|.....+..||+|+++|.-..+ ..+++.++.+++..+ ++ ....+..|.
T Consensus 97 ~~~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~~~~ad~e~i~~~~~~l~~l--gl~~~~~i~i~~ 166 (423)
T 1htt_A 97 LYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRAL--GISEHVTLELNS 166 (423)
T ss_dssp STTCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHH--TCGGGCEEEEEE
T ss_pred ccCCCeEEEEEcCEecCCCCCCCccceeEEeeEEEECCCCchhhHHHHHHHHHHHHHC--CCCCCcEEEEcC
Confidence 13999999999999887779999999999998765 336777777777766 55 445666665
|
| >4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.3e-06 Score=92.07 Aligned_cols=130 Identities=17% Similarity=0.281 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc-----cCCCCC-cceeeccCCCCcceeeeeCHHHHHHHHHHcc-C--C
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI-----AGGATA-KPFVTHHNDLNMDLYMRIAPELYLKMLVVGG-L--D 280 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-----~gga~a-~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g-~--~ 280 (553)
-.+.+..|.+.+|+.|..+||.||.||++.+. ..|... ..| +..+.-|..+.||.-.....-|.++.. . -
T Consensus 27 ~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y-~f~D~~g~~l~LRPd~T~~~aR~~~~~~~~p~ 105 (464)
T 4g84_A 27 QMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIY-DLKDQGGELLSLRYDLTVPFARYLAMNKLTNI 105 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCC-BBCCCSSCCEEECSCSHHHHHHHHHHTTCSCE
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeE-EEECCCCCEEEeCCcCcHHHHHHHHhcCCCCc
Confidence 34688899999999999999999999999532 122222 233 233556788899965544555554432 1 3
Q ss_pred cEEEEccccccCCCCC--CccCCcceeeeEeccC-C----HHHHHHHHHHHHhcccccCCCcccccccc
Q psy11418 281 RVYEVGRQFRNEGIDL--THNPEFTTCEFYMAYA-D----YNDLMHLTEDLISGRKEDRNRPCVMANAR 342 (553)
Q Consensus 281 rVfei~~~FR~E~~~~--~H~~EFt~lE~e~a~~-~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r 342 (553)
|.|+||++||.|.... .+.-||+|+++|.-.. + -.+++.++-++++.+ +++...+..|.+
T Consensus 106 k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~l--gl~~~~i~i~~~ 172 (464)
T 4g84_A 106 KRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSL--QIGDFLVKVNDR 172 (464)
T ss_dssp EEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHHH--TCCCEEEEEEEH
T ss_pred eeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHHHh--CCCCcceeecch
Confidence 8999999999997754 4788999999998764 2 357888888888877 666677766654
|
| >2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.2e-06 Score=91.48 Aligned_cols=115 Identities=15% Similarity=0.163 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CC----CCCcceeeccCCCCcceeeeeCHHHHHHHHHHcc---
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GG----ATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG--- 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gg----a~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g--- 278 (553)
-.+++.+|.+.+++.+.+.||.||.||+|.... +| -.-..|.. -+.++||+-..+..+-.+....
T Consensus 171 ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~----~~~~l~LrPt~e~~i~~~~~~~i~s 246 (425)
T 2dq3_A 171 GARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKC----ERDNLYLIPTAEVPLTNLYREEILK 246 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBC----TTTCCEECSSTHHHHHGGGTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEe----cCCeEEEcCCCcHHHHHHHHhhccc
Confidence 456789999999999999999999999996321 11 11133322 2568999977766555443322
Q ss_pred ---C-CcEEEEccccccCCCC----C---CccCCcceeeeEeccCC------HHHHHHHHHHHHhcc
Q psy11418 279 ---L-DRVYEVGRQFRNEGID----L---THNPEFTTCEFYMAYAD------YNDLMHLTEDLISGR 328 (553)
Q Consensus 279 ---~-~rVfei~~~FR~E~~~----~---~H~~EFt~lE~e~a~~~------~~~~m~~~e~li~~~ 328 (553)
+ -|+|++|+|||+|.+. + -+..||+|.|++....+ +.+++++++++++.+
T Consensus 247 ~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~L 313 (425)
T 2dq3_A 247 EENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLL 313 (425)
T ss_dssp TTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHC
Confidence 1 3999999999999864 2 27789999999874432 245555555555554
|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=2e-06 Score=96.58 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCC-cceeeeeCHHHHHHHHHHccC
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLN-MDLYMRIAPELYLKMLVVGGL 279 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~-~~~~L~~Spql~lk~l~~~g~ 279 (553)
.-.+++..|.+.+|+.+.+.||.||.||+|.+.. +|. .-..|.. .+.-+ .+++||.-.+-..-+++....
T Consensus 269 ~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~-~d~~~~~~~~LrP~~~~~~~~~~~~~~ 347 (645)
T 1nyr_A 269 NGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPP-MQLDETESMVLRPMNCPHHMMIYANKP 347 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCC-EEETTTEEEEECSSSHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCccee-EecCCCeEEEeCCCCCHHHHHHHHhhh
Confidence 3468999999999999999999999999996421 121 1233432 12235 789999877666666555442
Q ss_pred -------CcEEEEccccccCCCCCC----ccCCcceeeeEeccCC-------HHHHHHHHHHHHhcccccCCCccccccc
Q psy11418 280 -------DRVYEVGRQFRNEGIDLT----HNPEFTTCEFYMAYAD-------YNDLMHLTEDLISGRKEDRNRPCVMANA 341 (553)
Q Consensus 280 -------~rVfei~~~FR~E~~~~~----H~~EFt~lE~e~a~~~-------~~~~m~~~e~li~~~~~~~~~iqv~~n~ 341 (553)
-|+|+||+|||+|.+..+ +..||||+|+|. |.+ +.++++++.+++..+ ++....+..+.
T Consensus 348 ~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~-f~~~~~~~d~~~e~i~~~~~~l~~l--Gl~~~~~~l~~ 424 (645)
T 1nyr_A 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHI-FVRPDQIKEEFKRVVNMIIDVYKDF--GFEDYSFRLSY 424 (645)
T ss_dssp CBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHHHHHHHHT--TCCCEEEEEEE
T ss_pred hhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEE-EcCHHHHHHHHHHHHHHHHHHHHHc--CCCeEEEEEeC
Confidence 299999999999999643 679999999998 443 356677777777766 55444455444
Q ss_pred c
Q psy11418 342 R 342 (553)
Q Consensus 342 r 342 (553)
+
T Consensus 425 ~ 425 (645)
T 1nyr_A 425 R 425 (645)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=2e-06 Score=93.06 Aligned_cols=48 Identities=29% Similarity=0.434 Sum_probs=44.7
Q ss_pred cEEEEccccccCCCCCCccCCcceeeeEecc--CCHHHHHHHHHHHHhcc
Q psy11418 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAY--ADYNDLMHLTEDLISGR 328 (553)
Q Consensus 281 rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~--~~~~~~m~~~e~li~~~ 328 (553)
|+|+||+|||+|..|.+|+|+|+|+|...+. .++.|++.+++.++..+
T Consensus 349 riFeiGrVFR~d~~DatHlpeFhQlegl~~~~~v~f~dLKg~Le~~l~~l 398 (508)
T 3l4g_A 349 KYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKL 398 (508)
T ss_dssp EEEEEEEEECCSCCCSSSCSEEEEEEEEEEEESCCHHHHHHHHHHHHHTT
T ss_pred eEEEEccEEecCCCCCCcCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 8999999999999999999999999998874 48999999999999887
|
| >1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A | Back alignment and structure |
|---|
Probab=98.19 E-value=3.8e-06 Score=90.99 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceecccc-----CCC----CCcceeeccC---CCCcceeeeeCHHHHHHHHHHc-
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-----GGA----TAKPFVTHHN---DLNMDLYMRIAPELYLKMLVVG- 277 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~-----gga----~a~~F~t~~~---~~~~~~~L~~Spql~lk~l~~~- 277 (553)
.+++..|.+.+|+.|...||.||.||+|.+.. +|- .-+.|..... ..+.+++||.-.+-..-+++..
T Consensus 44 ~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~~ 123 (477)
T 1hc7_A 44 YAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKW 123 (477)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHHHhh
Confidence 46888999999999999999999999996432 221 1233432211 1257899997665322222221
Q ss_pred -----cC-CcEEEEccccccCCCCCC--ccCCcceeeeEeccCCHHHHHHHHHH
Q psy11418 278 -----GL-DRVYEVGRQFRNEGIDLT--HNPEFTTCEFYMAYADYNDLMHLTED 323 (553)
Q Consensus 278 -----g~-~rVfei~~~FR~E~~~~~--H~~EFt~lE~e~a~~~~~~~m~~~e~ 323 (553)
.+ -|+|+||+|||+|..... +.-||+|+|++..+.+.++....+..
T Consensus 124 ~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~ 177 (477)
T 1hc7_A 124 IRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRR 177 (477)
T ss_dssp CCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHH
T ss_pred hhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHHHHHH
Confidence 22 299999999999966434 88999999999999876554444333
|
| >3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A | Back alignment and structure |
|---|
Probab=98.17 E-value=3.4e-06 Score=91.25 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHH-----c
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVV-----G 277 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~-----~ 277 (553)
.+++..|.+.+|+.|...||.||.||+|.+.+ +|. .-+.|.. +.-+..++||.-.+...-++++ .
T Consensus 49 ~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~--d~~~~~l~LRP~~t~~i~~~~~~~~~s~ 126 (471)
T 3a32_A 49 GPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLF--DIEGHEFAVKPMNCPYHILLFLNEVAKH 126 (471)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEE--EETTEEEEECSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEE--ecCCcEEEEccccHHHHHHHHHhhhhhc
Confidence 46888999999999999999999999996421 221 2244543 3346789999665443333222 1
Q ss_pred ----cC-CcEEEEccccccCCCC--CC--ccCCcceeeeEeccCC------HHHHHHHHHHHHhc-ccccC----CCccc
Q psy11418 278 ----GL-DRVYEVGRQFRNEGID--LT--HNPEFTTCEFYMAYAD------YNDLMHLTEDLISG-RKEDR----NRPCV 337 (553)
Q Consensus 278 ----g~-~rVfei~~~FR~E~~~--~~--H~~EFt~lE~e~a~~~------~~~~m~~~e~li~~-~~~~~----~~iqv 337 (553)
.+ -|+|+||+|||+|... .. +.-||+|+|+|..... +.+++.++.+++.. + ++ ....+
T Consensus 127 r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~~~~~~de~~e~i~~~~~~l~~~l--Gl~~~~~~~~l 204 (471)
T 3a32_A 127 RSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLF--KLGVSSETFKV 204 (471)
T ss_dssp GGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHTS--CCCCSTTTEEE
T ss_pred cccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcChHHHHHHHHHHHHHHHHHHHHhh--CCCcCCCCeEE
Confidence 23 3999999999999876 44 7889999999986442 25577777777777 5 45 34555
Q ss_pred ccccc
Q psy11418 338 MANAR 342 (553)
Q Consensus 338 ~~n~r 342 (553)
..+.+
T Consensus 205 ~i~~~ 209 (471)
T 3a32_A 205 RLSMS 209 (471)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 55544
|
| >1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=6.5e-06 Score=88.72 Aligned_cols=119 Identities=18% Similarity=0.201 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc-----CCC----CCcceeeccCC---CCcceeeeeCHHHHHHHHHHc
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-----GGA----TAKPFVTHHND---LNMDLYMRIAPELYLKMLVVG 277 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~-----gga----~a~~F~t~~~~---~~~~~~L~~Spql~lk~l~~~ 277 (553)
-.+++..|.+.+|+.|...||.||.||+|.+.. .|- .-+.|...... .+.+++||.-.+-..-++++.
T Consensus 37 g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~ 116 (459)
T 1nj8_A 37 GFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKL 116 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHHHH
Confidence 346889999999999999999999999996421 221 12345432111 267899998777666665553
Q ss_pred cC-------CcEEEEccccccCCC-CCC--ccCCcc-eeeeEeccCCHHH-------HHHHHHHHHhcc
Q psy11418 278 GL-------DRVYEVGRQFRNEGI-DLT--HNPEFT-TCEFYMAYADYND-------LMHLTEDLISGR 328 (553)
Q Consensus 278 g~-------~rVfei~~~FR~E~~-~~~--H~~EFt-~lE~e~a~~~~~~-------~m~~~e~li~~~ 328 (553)
.+ -|+|+||+|||+|.. ... +.-||+ |+|.+..+.+.++ ++++..+++..+
T Consensus 117 ~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~~~~~~~~~L 185 (459)
T 1nj8_A 117 WVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTL 185 (459)
T ss_dssp TCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHHHHHHHHHHC
Confidence 32 299999999999998 333 888999 9999998887444 455555555444
|
| >2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=4.5e-06 Score=92.32 Aligned_cols=106 Identities=15% Similarity=0.198 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC--
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL-- 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~-- 279 (553)
-.+++..|.+.+|+.|...||.||.||+|.+.+ +|. .-+.|.. .+.-+..++||.-.+-..-+++...+
T Consensus 46 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~-~d~~~~~~~LrP~~~~~~~~~~~~~~~s 124 (572)
T 2j3l_A 46 ANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRL-KDRNDRDYILGPTHEETFTELIRDEINS 124 (572)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEE-ECTTCCEEEECSCCHHHHHHHHHHHCCB
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEE-ecCCCCeEEEccccHHHHHHHHHhhccC
Confidence 467899999999999999999999999996431 221 1233432 23456889999666544433333322
Q ss_pred -----CcEEEEccccccCCCCCC---ccCCcceeeeEeccCCHHH
Q psy11418 280 -----DRVYEVGRQFRNEGIDLT---HNPEFTTCEFYMAYADYND 316 (553)
Q Consensus 280 -----~rVfei~~~FR~E~~~~~---H~~EFt~lE~e~a~~~~~~ 316 (553)
-|+|+||+|||+|..... +..||+|+|+|.-..+-.+
T Consensus 125 ~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~ 169 (572)
T 2j3l_A 125 YKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEAS 169 (572)
T ss_dssp GGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHH
T ss_pred hhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHH
Confidence 299999999999988422 7899999999998775443
|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=3.7e-06 Score=94.26 Aligned_cols=127 Identities=20% Similarity=0.203 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC--
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL-- 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~-- 279 (553)
-.+++..|.+.+|+.+.+.||.||.||+|.+.. +|- .-..|. .+.-+.+++||.-.+-..=+++....
T Consensus 270 g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~--~d~~~~~~~LrP~~~~~~~~~~~~~~~s 347 (642)
T 1qf6_A 270 GWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT--TSSENREYCIKPMNCPGHVQIFNQGLKS 347 (642)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEE--EEETTEEEEECSSSHHHHHHHHTTSCEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCcccccccccee--eecCCceEEecCCCCHHHHHHHHhhhhh
Confidence 457899999999999999999999999996432 121 123454 23346789999776665555544332
Q ss_pred -----CcEEEEccccccCCCCC----CccCCcceeeeEeccCC-------HHHHHHHHHHHHhcccccCCCccccccc
Q psy11418 280 -----DRVYEVGRQFRNEGIDL----THNPEFTTCEFYMAYAD-------YNDLMHLTEDLISGRKEDRNRPCVMANA 341 (553)
Q Consensus 280 -----~rVfei~~~FR~E~~~~----~H~~EFt~lE~e~a~~~-------~~~~m~~~e~li~~~~~~~~~iqv~~n~ 341 (553)
-|+|+||+|||+|.+.. .+.-||||.|++. |.+ +.++++++.+++..+ ++....+..+.
T Consensus 348 yr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~-f~~~~~~~~e~~~~i~~~~~i~~~l--Gl~~~~v~l~~ 422 (642)
T 1qf6_A 348 YRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDEVNGCIRLVYDMYSTF--GFEKIVVKLST 422 (642)
T ss_dssp GGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHHHHHHGGG--TCCCCEEEEEC
T ss_pred ccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEE-EcCHHHHHHHHHHHHHHHHHHHHHc--CCCceEEEEec
Confidence 29999999999999832 2789999999998 543 233566667777666 44334444443
|
| >3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=8.6e-06 Score=87.77 Aligned_cols=118 Identities=13% Similarity=0.090 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHh-hhCCeEEEecceecccc----CCC----CCcceeeccC-CCCcceeeeeCHHHHHHHHHHccC
Q psy11418 210 KFIVRAQIIAYVRRYL-DSLGFLEVETPMMNMIA----GGA----TAKPFVTHHN-DLNMDLYMRIAPELYLKMLVVGGL 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl-~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~-~~~~~~~L~~Spql~lk~l~~~g~ 279 (553)
-.+++..|.+.+|+.+ .+.||.||.||+|.... +|- .-+.|..... .-+.+++||--.+...-+++....
T Consensus 63 g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~~ 142 (460)
T 3uh0_A 63 GAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKD 142 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHhcc
Confidence 3578999999999999 99999999999995321 121 1234443211 135789999777666655554432
Q ss_pred -------CcEEEEccccccCCCC--CC--ccCCcceeeeEeccCCHH-------HHHHHHHHHH-hcc
Q psy11418 280 -------DRVYEVGRQFRNEGID--LT--HNPEFTTCEFYMAYADYN-------DLMHLTEDLI-SGR 328 (553)
Q Consensus 280 -------~rVfei~~~FR~E~~~--~~--H~~EFt~lE~e~a~~~~~-------~~m~~~e~li-~~~ 328 (553)
-|+|++|+|||+|... .- +..||+|.|.+. |.+-+ ++++++.+++ +.+
T Consensus 143 ~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~~e~~~~e~~~~i~~~~~~~~~~l 209 (460)
T 3uh0_A 143 RSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCTPSQVKSEIFNSLKLIDIVYNKIF 209 (460)
T ss_dssp CBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHHHHHHTTTS
T ss_pred ccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2899999999999986 23 889999999996 45433 2555666666 444
|
| >1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.1e-05 Score=87.81 Aligned_cols=110 Identities=23% Similarity=0.205 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc---C--C----CCCcceeeccC---CCCcceeeeeCHHHHHHHHHHc
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA---G--G----ATAKPFVTHHN---DLNMDLYMRIAPELYLKMLVVG 277 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~---g--g----a~a~~F~t~~~---~~~~~~~L~~Spql~lk~l~~~ 277 (553)
-.+++..|.+.+++.|.+ ||.||.||+|.+.. + | -.-+.|..... ..+.+++||--.+..+-+++..
T Consensus 70 g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~ 148 (501)
T 1nj1_A 70 GFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFAL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHHh
Confidence 346788899999999999 99999999996421 1 1 01234443211 0256899997776665555443
Q ss_pred c------C-CcEEEEccccccCCCCC-C--ccCCcc-eeeeEeccCCHHHHHHH
Q psy11418 278 G------L-DRVYEVGRQFRNEGIDL-T--HNPEFT-TCEFYMAYADYNDLMHL 320 (553)
Q Consensus 278 g------~-~rVfei~~~FR~E~~~~-~--H~~EFt-~lE~e~a~~~~~~~m~~ 320 (553)
. + -|+|++|+|||+|..++ . +.-||+ |+|.+..+.+.++....
T Consensus 149 ~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e 202 (501)
T 1nj1_A 149 WVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQ 202 (501)
T ss_dssp HCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHH
T ss_pred hhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHH
Confidence 2 2 29999999999999844 3 788999 99999988875544333
|
| >4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.3e-05 Score=87.33 Aligned_cols=115 Identities=14% Similarity=0.063 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc---cC-CCCC-----cceeecc-C--CCCcceeeeeCHHHHHHHHHHc
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI---AG-GATA-----KPFVTHH-N--DLNMDLYMRIAPELYLKMLVVG 277 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~---~g-ga~a-----~~F~t~~-~--~~~~~~~L~~Spql~lk~l~~~ 277 (553)
-.+++..|.+.+++.+.+.||.||.||+|.+. .. .+.. +.|.+.. . ..+.+++||.-.+-.+-.+...
T Consensus 60 G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~~ 139 (519)
T 4hvc_A 60 AYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAK 139 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHHh
Confidence 35688999999999999999999999999532 11 1111 2332211 0 0124689986655544443333
Q ss_pred c------C-CcEEEEccccccCCCCC---CccCCcceeeeEeccCCHHHHHHHHHHH
Q psy11418 278 G------L-DRVYEVGRQFRNEGIDL---THNPEFTTCEFYMAYADYNDLMHLTEDL 324 (553)
Q Consensus 278 g------~-~rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~~e~l 324 (553)
. + -|+|++|+|||+|...+ -+.-||+|.|.+..|.+.++..+.++.+
T Consensus 140 ~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~ 196 (519)
T 4hvc_A 140 WVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQI 196 (519)
T ss_dssp HCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred hccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHH
Confidence 2 2 28999999999995554 2788999999999999866666555543
|
| >3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=97.98 E-value=6.1e-06 Score=89.92 Aligned_cols=128 Identities=14% Similarity=0.097 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc-----CCC----CCcceeeccC---CCCcceeeeeCHHHHHHHHHHc
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-----GGA----TAKPFVTHHN---DLNMDLYMRIAPELYLKMLVVG 277 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~-----gga----~a~~F~t~~~---~~~~~~~L~~Spql~lk~l~~~ 277 (553)
-.+++..|.+.+|+.+.+.||.||.||+|.+.. +|- .-+.|..... ..+.+++||...+-.+-.++..
T Consensus 54 G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~~ 133 (518)
T 3ial_A 54 GFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSK 133 (518)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHHh
Confidence 457889999999999999999999999996421 110 1234543211 1256899997766554444433
Q ss_pred cC------C-cEEEEccccccCCCCC-C--ccCCcceeeeEeccCCHHHHHHHHHHHH---hccc-ccCCCccc
Q psy11418 278 GL------D-RVYEVGRQFRNEGIDL-T--HNPEFTTCEFYMAYADYNDLMHLTEDLI---SGRK-EDRNRPCV 337 (553)
Q Consensus 278 g~------~-rVfei~~~FR~E~~~~-~--H~~EFt~lE~e~a~~~~~~~m~~~e~li---~~~~-~~~~~iqv 337 (553)
.+ . |+|++|+|||+|...+ - +.-||+|.|.+....+.++..+.++.++ ..++ +.++....
T Consensus 134 ~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~~i~~~~LGlp~~ 207 (518)
T 3ial_A 134 WVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDTIFSDELCFKGQ 207 (518)
T ss_dssp HCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHTTTTCCCCE
T ss_pred hhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 22 2 8999999999994433 3 8889999999998788777766666654 4455 55555543
|
| >2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A | Back alignment and structure |
|---|
Probab=97.98 E-value=1.8e-05 Score=84.98 Aligned_cols=113 Identities=21% Similarity=0.209 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc---cCCCCCcceeecc-CCCCcceeeeeCHHHHHHHHHHcc------C
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI---AGGATAKPFVTHH-NDLNMDLYMRIAPELYLKMLVVGG------L 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~---~gga~a~~F~t~~-~~~~~~~~L~~Spql~lk~l~~~g------~ 279 (553)
-.+++.+|.+.+++.+.+.||.||.||+|... .+.+...-|.-.. ..-+.++||+-..+..+-.+.... +
T Consensus 192 ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~d~~l~LrPt~e~~~~~~~~~~~~s~~~L 271 (455)
T 2dq0_A 192 IVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKVEDEDLYLIPTAEHPLAGMHANEILDGKDL 271 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBBTTSSCEECSSTHHHHHHTTTTEEEETTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCeecCCcEEEcCcCcHHHHHHHHhCccCchhC
Confidence 45678999999999999999999999999642 1211111221100 011468999988777666554432 1
Q ss_pred -CcEEEEccccccCCCC----C---CccCCcceeeeEeccCCHHHHHHHHHH
Q psy11418 280 -DRVYEVGRQFRNEGID----L---THNPEFTTCEFYMAYADYNDLMHLTED 323 (553)
Q Consensus 280 -~rVfei~~~FR~E~~~----~---~H~~EFt~lE~e~a~~~~~~~m~~~e~ 323 (553)
-|+|++|+|||+|... + -+.-||+|.|++. |.+-++..+..++
T Consensus 272 Plr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~-f~~pe~s~~~~~e 322 (455)
T 2dq0_A 272 PLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFV-YSRPEESWEWHEK 322 (455)
T ss_dssp SEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEE-EECTTTHHHHHHH
T ss_pred CEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEE-ecCHHHHHHHHHH
Confidence 2899999999999863 2 2778999999994 5533444333333
|
| >1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A | Back alignment and structure |
|---|
Probab=97.95 E-value=1.5e-05 Score=84.90 Aligned_cols=112 Identities=20% Similarity=0.294 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHcc---
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG--- 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g--- 278 (553)
-.+++.+|.+.+++.+.+.||.||.||+|.... +|- .-+.|.. -+.++||+...+-.+-.++...
T Consensus 165 ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~----~d~~l~L~Pt~e~~~~~~~~~~~~s 240 (421)
T 1ses_A 165 LALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAI----AETDLYLTGTAEVVLNALHSGEILP 240 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBB----TTSSEEECSSTHHHHHHTTTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEE----cCCeEEEeecCcHHHHHHhcccccC
Confidence 346889999999999999999999999995321 121 1123322 1467999988777766654432
Q ss_pred ---C-CcEEEEccccccCCC----CC---CccCCcceeeeEeccCC-HHHHHHHHHHHH
Q psy11418 279 ---L-DRVYEVGRQFRNEGI----DL---THNPEFTTCEFYMAYAD-YNDLMHLTEDLI 325 (553)
Q Consensus 279 ---~-~rVfei~~~FR~E~~----~~---~H~~EFt~lE~e~a~~~-~~~~m~~~e~li 325 (553)
+ -|+|++|+|||+|.+ ++ -+.-||+|.|++..-.+ .++..+..++++
T Consensus 241 ~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~ 299 (421)
T 1ses_A 241 YEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELL 299 (421)
T ss_dssp GGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHH
T ss_pred chhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHH
Confidence 1 299999999999963 22 27789999999986554 344444333333
|
| >1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.91 E-value=5e-05 Score=82.38 Aligned_cols=116 Identities=16% Similarity=0.132 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc-----CCC---CC-cceeeccCCCCcceeeeeCHHHHHHHHHHccC-
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-----GGA---TA-KPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL- 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~-----gga---~a-~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~- 279 (553)
-.+++.+|++.+++.+.+.||.||.||.|.... |.- .. +.|.+.. .-+.++||+-..|..+-.+.....
T Consensus 218 GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~-~~~~~l~L~PTaE~~~~~l~~~~i~ 296 (501)
T 1wle_A 218 GALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDP-SRFEDLNLAGTAEVGLAGYFMDHSV 296 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCT-TTSSSCEECSSHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEec-CCCCeEEECCcCcHHHHHHHhhccC
Confidence 457888899999999999999999999996421 111 11 4555421 124689999888877765544322
Q ss_pred ------CcEEEEccccccCCC---CC---CccCCcceeeeEeccCCH-HHHHHHHHHHHh
Q psy11418 280 ------DRVYEVGRQFRNEGI---DL---THNPEFTTCEFYMAYADY-NDLMHLTEDLIS 326 (553)
Q Consensus 280 ------~rVfei~~~FR~E~~---~~---~H~~EFt~lE~e~a~~~~-~~~m~~~e~li~ 326 (553)
-|+|++++|||+|.. ++ -+.-||+|.|.+..-.+. ++..+..++++.
T Consensus 297 s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~ 356 (501)
T 1wle_A 297 AFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLS 356 (501)
T ss_dssp EGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHH
T ss_pred CcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHH
Confidence 299999999999976 33 367799999999866653 555555555543
|
| >12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=2.2e-05 Score=79.22 Aligned_cols=118 Identities=13% Similarity=0.280 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHhh-----hCCeEEEecceeccccCCC------CCcceeeccCCC-CcceeeeeCHHHHHHHHHHc-
Q psy11418 211 FIVRAQIIAYVRRYLD-----SLGFLEVETPMMNMIAGGA------TAKPFVTHHNDL-NMDLYMRIAPELYLKMLVVG- 277 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~-----~~gF~EV~TPil~~~~gga------~a~~F~t~~~~~-~~~~~L~~Spql~lk~l~~~- 277 (553)
++-....+..+++||. +.|+++|.+|+++....|- ..+|-....... +..+-+..|.-.|++..+..
T Consensus 5 ~~~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~~~~~~~~eivhSLaKWKR~aL~~y 84 (330)
T 12as_A 5 YIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQH 84 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecceEecccCCCceEEEeeeHHHHHHHHHHhC
Confidence 4566778899999998 8999999999997543321 135554433333 77888999999999987654
Q ss_pred cC---CcEEEEccccccCC--CCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcc
Q psy11418 278 GL---DRVYEVGRQFRNEG--IDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGR 328 (553)
Q Consensus 278 g~---~rVfei~~~FR~E~--~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~ 328 (553)
|| +.+|+-.++.|.+. .|.+|.-+|+|.|||......+..|+++++.++.+
T Consensus 85 ~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~I 140 (330)
T 12as_A 85 DFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAI 140 (330)
T ss_dssp TCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHH
T ss_pred CCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHHH
Confidence 47 89999999999755 35689999999999999997777777777775544
|
| >1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.7e-05 Score=79.81 Aligned_cols=116 Identities=11% Similarity=-0.030 Sum_probs=81.4
Q ss_pred HHHHH--HHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCH--HHHHHHHHHc-c-C-CcEEEEccccc
Q psy11418 218 IAYVR--RYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAP--ELYLKMLVVG-G-L-DRVYEVGRQFR 290 (553)
Q Consensus 218 ~~~ir--~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Sp--ql~lk~l~~~-g-~-~rVfei~~~FR 290 (553)
.+.+| +.|..+||.||.||++...+--.. +.|. +.-|..+.||.-. .+....+ .. . + -|.|++|+|||
T Consensus 7 e~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~-d~f~---d~~g~~l~LRpd~T~~~a~~~~-~~~~~~p~R~~y~g~vfR 81 (275)
T 1usy_A 7 EKVFSFYSKATKKGFSPFFVPALEKAEEPAG-NFFL---DRKGNLFSIREDFTKTVLNHRK-RYSPDSQIKVWYADFVYR 81 (275)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEEECSSCCS-SCEE---ETTSCEEEECCCHHHHHHHHHT-TCTTCCCEEEECCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEecCccccchhhhcc-cccC---CCCCCEEEeCCcChHHHHHHHh-hcCCCCceEEEEeceEEe
Confidence 44555 999999999999999964321111 2443 3457788899432 2222221 11 1 2 49999999999
Q ss_pred cCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCccccccccc
Q psy11418 291 NEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANARM 343 (553)
Q Consensus 291 ~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~ 343 (553)
.|.+.. .||||+++|.-..+ -.+++.++-++++.+ ++...++..|.+.
T Consensus 82 ~e~~~~---Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~~l--gl~~~~i~l~~~~ 133 (275)
T 1usy_A 82 YSGSDL---VAEYQLGLEKVPRNSLDDSLEVLEIIVESASEF--FEGPVIVEIGHTG 133 (275)
T ss_dssp EETTEE---EEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHH--CCSCEEEEEEETT
T ss_pred cCCCCC---CeeeEeCEEEecCCCchhHHHHHHHHHHHHHHc--CCCCeEEEeCCHH
Confidence 998877 89999999997663 367888888888887 6666777777654
|
| >3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.78 E-value=1.8e-05 Score=85.78 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc---C-C----CCCcceeeccC-------CCCcceeeeeCHHHHHHHH
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA---G-G----ATAKPFVTHHN-------DLNMDLYMRIAPELYLKML 274 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~---g-g----a~a~~F~t~~~-------~~~~~~~L~~Spql~lk~l 274 (553)
-.+++.++++.+++.+.++||.||.||.|.+.. + | =..+.|.+... ..+.++||+-..|..+-.+
T Consensus 200 GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l 279 (522)
T 3vbb_A 200 LVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAAL 279 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHHH
Confidence 458899999999999999999999999995321 1 1 01234544211 1246799998777766443
Q ss_pred HHccC-------CcEEEEccccccCCC----CC---CccCCcceeeeEe
Q psy11418 275 VVGGL-------DRVYEVGRQFRNEGI----DL---THNPEFTTCEFYM 309 (553)
Q Consensus 275 ~~~g~-------~rVfei~~~FR~E~~----~~---~H~~EFt~lE~e~ 309 (553)
..... -|+|++++|||+|.+ ++ -+.-||+|.|.+.
T Consensus 280 ~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~ 328 (522)
T 3vbb_A 280 HRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFV 328 (522)
T ss_dssp STTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEE
T ss_pred HhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEE
Confidence 32211 189999999999985 23 3677999999986
|
| >3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A | Back alignment and structure |
|---|
Probab=97.71 E-value=8.6e-05 Score=79.95 Aligned_cols=115 Identities=15% Similarity=0.209 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC-
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL- 279 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~- 279 (553)
.-.+++.++++.+++.+.+.||.||.||.|.... .|- ..+.|.+.. -+.++||.-..|..+-.++..-.
T Consensus 183 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~--~~~~~~LipTaE~pl~~l~~~ei~ 260 (485)
T 3qne_A 183 YGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVID--GEDEKYLIATSEQPISAYHAGEWF 260 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEE--TTEEEEECSSTHHHHHHHTTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeC--CCCeEEEeccccHHHHHHHhcccc
Confidence 3558899999999999999999999999996421 110 123454421 15679998877877766644321
Q ss_pred C--------cEEEEccccccCCCC----C---CccCCcceeeeEeccCCHHHHHHHHHHHHh
Q psy11418 280 D--------RVYEVGRQFRNEGID----L---THNPEFTTCEFYMAYADYNDLMHLTEDLIS 326 (553)
Q Consensus 280 ~--------rVfei~~~FR~E~~~----~---~H~~EFt~lE~e~a~~~~~~~m~~~e~li~ 326 (553)
. |+|++++|||+|... + -+.-||+|.|.+. |..-++..+..++++.
T Consensus 261 ~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~pe~s~~e~e~ml~ 321 (485)
T 3qne_A 261 ESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTEPEKSWEEFDRMIG 321 (485)
T ss_dssp SSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHH
T ss_pred ccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeCHHHHHHHHHHHHH
Confidence 1 699999999999753 3 2677999999997 5554555555555443
|
| >3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=4.3e-05 Score=82.31 Aligned_cols=114 Identities=14% Similarity=0.163 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC-
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL- 279 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~- 279 (553)
.-.+++.++++.+++.+.++||.||.||.|.... .|- ..+.|.+.. -+.++||.-..+..+-.+.....
T Consensus 206 ~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~--~~~~~~L~PTaE~~l~~l~~~~i~ 283 (484)
T 3lss_A 206 GLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSG--DGDKKYLIATSEMPIAAYHRGRWF 283 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEES--SSSCEEECSSTHHHHHHHTTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeec--CCcceEEeccCcHHHHHHHhcccc
Confidence 3568899999999999999999999999996421 111 013454432 15789999888887754432211
Q ss_pred ------CcEEEEccccccCCC----CC---CccCCcceeeeEeccCCHHH--HHHHHHHHH
Q psy11418 280 ------DRVYEVGRQFRNEGI----DL---THNPEFTTCEFYMAYADYND--LMHLTEDLI 325 (553)
Q Consensus 280 ------~rVfei~~~FR~E~~----~~---~H~~EFt~lE~e~a~~~~~~--~m~~~e~li 325 (553)
-|+|++++|||+|.. ++ -+.-||+|.|.+. |..-++ ..+..++++
T Consensus 284 sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~-f~~pe~~~s~~e~e~~~ 343 (484)
T 3lss_A 284 TELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFV-VCSPRQEESWRHLEDMI 343 (484)
T ss_dssp SCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEE-EECSSTTHHHHHHHHHH
T ss_pred chhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEE-EeCcchHHHHHHHHHHH
Confidence 189999999999963 33 2667999999985 433222 444444443
|
| >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00013 Score=79.92 Aligned_cols=114 Identities=18% Similarity=0.289 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC--
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL-- 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~-- 279 (553)
-.+++.++++.+++.+.++||.||.||.|.+.. .|- ..+.|.+. +.++||+-..+..+-.+.....
T Consensus 274 Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~----~~~~~L~PT~E~~~~~l~~~~i~s 349 (536)
T 3err_A 274 LALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA----ETDLYLTGTAEVVLNALHSGEILP 349 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET----TTTEEECSSTHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEec----CCCEEEccCCcHHHHHHHhccccc
Confidence 468899999999999999999999999996321 110 12445442 3679999877776554433221
Q ss_pred -----CcEEEEccccccCCC----CC---CccCCcceeeeEeccCC-HHHHHHHHHHHHhc
Q psy11418 280 -----DRVYEVGRQFRNEGI----DL---THNPEFTTCEFYMAYAD-YNDLMHLTEDLISG 327 (553)
Q Consensus 280 -----~rVfei~~~FR~E~~----~~---~H~~EFt~lE~e~a~~~-~~~~m~~~e~li~~ 327 (553)
-|+|++|+|||+|.. ++ -+.-||+|.|.+.--.+ .++..+..++++..
T Consensus 350 ~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~ 410 (536)
T 3err_A 350 YEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLEN 410 (536)
T ss_dssp GGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred HhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHH
Confidence 289999999999974 33 37789999999963332 23566555555543
|
| >1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=9e-05 Score=80.73 Aligned_cols=30 Identities=3% Similarity=-0.037 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhh--hCCeEEEecceecc
Q psy11418 211 FIVRAQIIAYVRRYLD--SLGFLEVETPMMNM 240 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~--~~gF~EV~TPil~~ 240 (553)
.+++..|.+.+|+.+. +.||.||.||+|.+
T Consensus 39 ~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~ 70 (505)
T 1ati_A 39 VELKNNLKQAWWRRNVYERDDMEGLDASVLTH 70 (505)
T ss_dssp HHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCcEEEEccccCC
Confidence 4688899999999999 99999999999954
|
| >2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A | Back alignment and structure |
|---|
Probab=97.57 E-value=3.7e-05 Score=83.70 Aligned_cols=115 Identities=19% Similarity=0.209 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHH-HhhhCCeEEEecceecccc----CCC----CCcceeecc-C--C---------------------
Q psy11418 210 KFIVRAQIIAYVRR-YLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHH-N--D--------------------- 256 (553)
Q Consensus 210 ~~~~rs~i~~~ir~-fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~-~--~--------------------- 256 (553)
-.+++.+|.+.+++ ++.+.||.||.||+|.+.. +|- .-..|.+.. . .
T Consensus 230 G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~~ 309 (522)
T 2cja_A 230 SARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKL 309 (522)
T ss_dssp HHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhccccccccc
Confidence 34688899999996 6899999999999995321 111 113343311 1 1
Q ss_pred -----CCcceeeeeCHHHHHHHHHHcc------CC-cEEE-EccccccCCCCC---CccCCcceeeeEeccCCHHHHHHH
Q psy11418 257 -----LNMDLYMRIAPELYLKMLVVGG------LD-RVYE-VGRQFRNEGIDL---THNPEFTTCEFYMAYADYNDLMHL 320 (553)
Q Consensus 257 -----~~~~~~L~~Spql~lk~l~~~g------~~-rVfe-i~~~FR~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~ 320 (553)
-+.++|||...+..+=.++... +. |+|+ +|+|||+|...+ -+.-||+|.|++. |.+.++..+.
T Consensus 310 ~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~-F~~pe~s~ee 388 (522)
T 2cja_A 310 IKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVW-IGTKEEVLKC 388 (522)
T ss_dssp HHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEEEE-EEEHHHHHHH
T ss_pred cccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEE-EeChHHHHHH
Confidence 2567899966544333222211 22 8999 999999994322 4888999999998 7777777666
Q ss_pred HHHHH
Q psy11418 321 TEDLI 325 (553)
Q Consensus 321 ~e~li 325 (553)
.++++
T Consensus 389 ~ee~i 393 (522)
T 2cja_A 389 AEELH 393 (522)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66666
|
| >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00054 Score=74.49 Aligned_cols=48 Identities=19% Similarity=0.258 Sum_probs=44.5
Q ss_pred cEEEEccccccCCC-CCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 281 RVYEVGRQFRNEGI-DLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 281 rVfei~~~FR~E~~-~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
|+||||+|||.|.. +.+|.+||+|++..+.+. |+.|+..++|.++..+
T Consensus 207 rLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~L 257 (534)
T 2du3_A 207 KLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQF 257 (534)
T ss_dssp EEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGG
T ss_pred eEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 89999999999877 788999999999999885 7999999999999887
|
| >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0011 Score=72.06 Aligned_cols=48 Identities=19% Similarity=0.303 Sum_probs=44.2
Q ss_pred cEEEEccccccCCC-CCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 281 RVYEVGRQFRNEGI-DLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 281 rVfei~~~FR~E~~-~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
|+||+|+|||.+.. +.+|.+||+|++.-+++. |+.|+...+|.++..+
T Consensus 219 rlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~L 269 (549)
T 2du7_A 219 KLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQF 269 (549)
T ss_dssp EEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGG
T ss_pred EEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 89999999998876 778999999999999886 7999999999999887
|
| >3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0006 Score=72.37 Aligned_cols=93 Identities=20% Similarity=0.186 Sum_probs=60.4
Q ss_pred HHHHHHHHhhhC--------CeEEEec-ceeccc---------cCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHcc
Q psy11418 217 IIAYVRRYLDSL--------GFLEVET-PMMNMI---------AGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG 278 (553)
Q Consensus 217 i~~~ir~fl~~~--------gF~EV~T-Pil~~~---------~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g 278 (553)
+.+.||++|... ||.|+.+ |.+.+. +..--|+. .+..-|++...-||.+.--++-+++..+
T Consensus 53 ~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~-~~Dtfyi~~~~vLRThts~~~~~~l~~~ 131 (415)
T 3cmq_A 53 IKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRK-KGDNYYLNRTHMLRAHTSAHQWDLLHAG 131 (415)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGC-GGGSCBSSSSEEECSSGGGGHHHHHHTT
T ss_pred HHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCccc-ccceEEecCCeEEcCCCcHHHHHHHHHC
Confidence 345566666555 8999998 666321 11000111 0111144566778866444444445667
Q ss_pred CCcEEEEccccccCCCCCCccCCcceeeeEec
Q psy11418 279 LDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMA 310 (553)
Q Consensus 279 ~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a 310 (553)
..|+|++|.|||.+..|+.|.|+|.|+|--..
T Consensus 132 ~~k~~~~G~VyR~D~~da~h~n~fhQ~egv~l 163 (415)
T 3cmq_A 132 LDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRL 163 (415)
T ss_dssp CSEEEEEEEEECCCCCBTTBCSEEEEEEEEEE
T ss_pred CCCEEEeeeEEeccchhhhhhHHhcCCCcEEE
Confidence 78999999999999999999999999995443
|
| >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00035 Score=76.69 Aligned_cols=68 Identities=24% Similarity=0.294 Sum_probs=52.5
Q ss_pred eeeeeC--HHHHHHHHHH--ccC--CcEEEEccccccCCC-CCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 261 LYMRIA--PELYLKMLVV--GGL--DRVYEVGRQFRNEGI-DLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 261 ~~L~~S--pql~lk~l~~--~g~--~rVfei~~~FR~E~~-~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
..||.| |.|..+.-.. .+. -|+||+|+|||++.. +.+|.+||+|++.-++.. |+.|+...+|.++..+
T Consensus 200 sVLRTsLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (648)
T 2odr_B 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (648)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred CcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 457754 5444443211 122 289999999998876 888999999999999885 8999999999999887
|
| >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00037 Score=76.65 Aligned_cols=68 Identities=24% Similarity=0.294 Sum_probs=52.5
Q ss_pred eeeeeC--HHHHHHHHHH--ccC--CcEEEEccccccCCC-CCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 261 LYMRIA--PELYLKMLVV--GGL--DRVYEVGRQFRNEGI-DLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 261 ~~L~~S--pql~lk~l~~--~g~--~rVfei~~~FR~E~~-~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
..||.| |.|..+.-.. .+. -|+||+|+|||++.. +.+|.+||+|++.-++.. |+.|+...+|.++..+
T Consensus 200 sVLRTSLlPGLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (665)
T 2odr_A 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (665)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred CcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 457754 5444443211 122 289999999998876 888999999999999885 8999999999999887
|
| >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00039 Score=76.57 Aligned_cols=68 Identities=24% Similarity=0.294 Sum_probs=52.5
Q ss_pred eeeeeC--HHHHHHHHHH--ccC--CcEEEEccccccCCC-CCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 261 LYMRIA--PELYLKMLVV--GGL--DRVYEVGRQFRNEGI-DLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 261 ~~L~~S--pql~lk~l~~--~g~--~rVfei~~~FR~E~~-~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
..||.| |.|..+.-.. .+. -|+||+|+|||++.. +.+|.+||+|++.-++.. |+.|+...+|.++..+
T Consensus 200 sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (685)
T 2odr_D 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (685)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred CcccccchhhHHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 457754 5444443211 122 289999999998876 788999999999999885 8999999999999887
|
| >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00042 Score=76.46 Aligned_cols=48 Identities=27% Similarity=0.384 Sum_probs=44.4
Q ss_pred cEEEEccccccCCC-CCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 281 RVYEVGRQFRNEGI-DLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 281 rVfei~~~FR~E~~-~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
|+||+|+|||++.. +.+|.+||+|++.-++.. |+.|+...+|.++..+
T Consensus 226 RLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (701)
T 2odr_C 226 KLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (701)
T ss_dssp EEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred EEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 89999999998876 888999999999999885 8999999999999887
|
| >2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0037 Score=54.01 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=62.2
Q ss_pred CCcEEEEEEEEEee-------ecCC--CceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc-
Q psy11418 89 ENVTLSVAGRVHAI-------RESG--TKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT- 158 (553)
Q Consensus 89 ~~~~V~v~Gri~~~-------R~~g--~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t- 158 (553)
.|+.|.+.|+|.++ ++.| +++..+.|.|++|.|.+.+-.+.. . ....+..|++|.|+|.+.+.
T Consensus 15 ~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~---~----~~~~l~~G~vv~i~g~~v~~~ 87 (115)
T 2k50_A 15 EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENI---K----LLKKFREGDVIRIKDVNIRGG 87 (115)
T ss_dssp TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGG---G----GGGTCCTTSEEEEEEEEECCC
T ss_pred CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchh---h----hhhcCCCCCEEEEEeeEEccc
Confidence 46678999999998 2344 478999999999999999886532 1 23568999999999998654
Q ss_pred cCCceeEeeeeEEEeccC
Q psy11418 159 KKGELSIIPKKLTLLSPC 176 (553)
Q Consensus 159 ~~ge~~l~~~~i~il~~~ 176 (553)
-.|.++|.+.....+.++
T Consensus 88 f~g~~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 88 FGGRKEAHLMPRSTVEVL 105 (115)
T ss_dssp SSSSCEEEECTTCCEEEE
T ss_pred cCCeEEEEECCCceEEEC
Confidence 467888888776555544
|
| >2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00079 Score=75.90 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhh-hCCeEEEecceecc
Q psy11418 211 FIVRAQIIAYVRRYLD-SLGFLEVETPMMNM 240 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~-~~gF~EV~TPil~~ 240 (553)
.+++..|.+.+|+.|. ..||.||.||+|.+
T Consensus 101 ~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~ 131 (693)
T 2zt5_A 101 CALKNNIIQTWRQHFIQEEQILEIDCTMLTP 131 (693)
T ss_dssp HHHHHHHHHHHHHHTHHHHTCEECCCCSEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCcEEEEeCCccc
Confidence 4788999999999998 56999999999963
|
| >3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0015 Score=67.09 Aligned_cols=117 Identities=15% Similarity=0.068 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc---cCCCC-----CcceeeccCC-----------------------CC
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI---AGGAT-----AKPFVTHHND-----------------------LN 258 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~---~gga~-----a~~F~t~~~~-----------------------~~ 258 (553)
--+++..+.+.+++ ..++||.||.||.|... .+.+- -..|.+..-. -+
T Consensus 63 ~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l~~ 141 (346)
T 3mf2_A 63 YESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSP 141 (346)
T ss_dssp HHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEEE
T ss_pred HHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhccccccccccCC
Confidence 44678889999999 88999999999999532 11110 1234432100 13
Q ss_pred cceeeeeCHHHHHHHHHHc-c-C----CcEEEEccccccCCC-CCCccCCcceeeeEeccCCHHHHHHHHHHHHhcc
Q psy11418 259 MDLYMRIAPELYLKMLVVG-G-L----DRVYEVGRQFRNEGI-DLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGR 328 (553)
Q Consensus 259 ~~~~L~~Spql~lk~l~~~-g-~----~rVfei~~~FR~E~~-~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~ 328 (553)
.++||.-..+..+=.+... | + -|+-++|+|||.|.+ +--++-+|+|.|+-. |.+-++..+..|+++..+
T Consensus 142 ~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~tpEqs~~e~e~l~~~a 217 (346)
T 3mf2_A 142 ADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IGTPDDVSDFRERWMVRA 217 (346)
T ss_dssp EEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EESHHHHHHHHHHHHHHH
T ss_pred CCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-EeCHHHHHHHHHHHHHHH
Confidence 4689987766665555442 2 2 366779999999996 235888999999887 567777666666666544
|
| >1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00097 Score=71.59 Aligned_cols=114 Identities=12% Similarity=0.056 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHh--hhCCeEEEecceecccc---CCCC-----Cccee---------------eccCCCCcceeeee
Q psy11418 211 FIVRAQIIAYVRRYL--DSLGFLEVETPMMNMIA---GGAT-----AKPFV---------------THHNDLNMDLYMRI 265 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl--~~~gF~EV~TPil~~~~---gga~-----a~~F~---------------t~~~~~~~~~~L~~ 265 (553)
..++..|.+.+++.+ .+.|+.||.||+|.+.. +... ++-+. +-...++.++|||.
T Consensus 62 ~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LRP 141 (454)
T 1g5h_A 62 VELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLRA 141 (454)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEECS
T ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeecc
Confidence 478899999888774 58899999999996432 1100 11111 00012345789995
Q ss_pred --CHH---HHHHHHHHc--cCC-cEEEEccccc---cCCCCC---CccCCcceeeeEeccCCHHHHHHHHHHHH
Q psy11418 266 --APE---LYLKMLVVG--GLD-RVYEVGRQFR---NEGIDL---THNPEFTTCEFYMAYADYNDLMHLTEDLI 325 (553)
Q Consensus 266 --Spq---l~lk~l~~~--g~~-rVfei~~~FR---~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~~e~li 325 (553)
+|. .|...+-.. .+. ++++||+||| ||-+.. .+.-||+|.|++. |.+.++..+..+.++
T Consensus 142 eta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~-F~~pe~~~e~~~~~~ 214 (454)
T 1g5h_A 142 TLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVW-FTPTRTSSQWLDFWL 214 (454)
T ss_dssp CSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEE-EECHHHHHHHHHHHH
T ss_pred cccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEE-EeCHhhHHHHHHHHH
Confidence 322 223332222 233 9999999999 696532 3678999999996 666665554444433
|
| >3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.029 Score=51.55 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=62.6
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCE-EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeee
Q psy11418 91 VTLSVAGRVHAIRESGTKLMFYDLRGEGL-KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKK 169 (553)
Q Consensus 91 ~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~ 169 (553)
..|+|.|.|.+++... +-..+.|-|++| .|.|++..+.. .+. ......+..|++|.|.|.+. +-.|+.+|.+..
T Consensus 48 ~~V~IvGiVv~~~~~~-~~~~ytIDD~TG~~I~cv~w~~~~--~~~-~~~~~~l~~G~~VrV~G~v~-~fr~~rqI~~~~ 122 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYE-GKHVLTVDDCSGMVLRVVFIIQDD--FSM-SKRAISMSPGNVVCVFGKIN-SFRSEVELIAQS 122 (159)
T ss_dssp CEEEEEEEEEEEEEET-TEEEEEEECSSSCEEEEEEEGGGC--HHH-HHHHTTCCTTCEEEEEEEEE-CSSSSCEEEEEE
T ss_pred EEEEEEEEEEEEEEeC-CEEEEEEecCCCCeEEEEEEccCC--CCc-ccccccCCCCCEEEEEEEEE-eeCCEEEEEEEE
Confidence 4699999999999887 667899999998 69999987641 111 11234589999999999985 457788999999
Q ss_pred EEEec
Q psy11418 170 LTLLS 174 (553)
Q Consensus 170 i~il~ 174 (553)
+.++.
T Consensus 123 i~~v~ 127 (159)
T 3kf6_A 123 FEELR 127 (159)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 98886
|
| >3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0054 Score=65.65 Aligned_cols=103 Identities=10% Similarity=-0.088 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhh-hCC-eEEEecceeccccCCCCCcceeeccCCCCcceeeee-CHHHHHHHH---HHc---cCC-
Q psy11418 211 FIVRAQIIAYVRRYLD-SLG-FLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRI-APELYLKML---VVG---GLD- 280 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~-~~g-F~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~-Spql~lk~l---~~~---g~~- 280 (553)
..+|+.|++..|+.+. ++| +.||.||+...-.-.+ |.+.|. +|||. .-|-++..+ +-. .+.
T Consensus 104 ~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SG-------H~d~~~--~~LRPeTaqg~~~nfk~~~~s~r~~LP~ 174 (459)
T 3ikl_A 104 VELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLP-------GDSAFR--GGLRENLLHGALEHYVNCLDLVNKRLPY 174 (459)
T ss_dssp HHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCS-------SCSCCT--TB-CSCSHHHHHHHTTTTTGGGTTBSSE
T ss_pred HHHHHHHHHHHHHHHhhccCceEeeccccccccccCc-------chhhhc--ceECCCCChhHHHHHhhhhhhccccCCe
Confidence 3688889986666654 365 8889999954211111 122232 88985 333333221 111 111
Q ss_pred cEEEEccccccCC--CCC----CccCCcceeeeEeccCCHHHHHHHHHH
Q psy11418 281 RVYEVGRQFRNEG--IDL----THNPEFTTCEFYMAYADYNDLMHLTED 323 (553)
Q Consensus 281 rVfei~~~FR~E~--~~~----~H~~EFt~lE~e~a~~~~~~~m~~~e~ 323 (553)
++.+||+|||+|. +.. -+.-||||.|.+. |.+-++..+..+.
T Consensus 175 ~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~-F~~Pe~~~e~~~~ 222 (459)
T 3ikl_A 175 GLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVW-FTPPRTSNQWLDF 222 (459)
T ss_dssp EEEEEEEEECCC----------CCCCEEEEEEEEE-EECGGGHHHHHHH
T ss_pred EEEEEeeeeecccccccCCCCcccccceeeeeEEE-EeChhHHHHHHHH
Confidence 7999999999995 343 3568999999985 5554443333333
|
| >4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.024 Score=50.49 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=58.0
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeE
Q psy11418 91 VTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKL 170 (553)
Q Consensus 91 ~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i 170 (553)
..|++.|+|.+++... .-.-+.|.|++|.|.+....+.. +.. ......+..|+.|.|.|.+. +-.|...|.+..+
T Consensus 37 ~~V~iVG~V~~~~~~~-~~~~~~ldD~TG~I~~~~W~~~~--~~~-~~~~~~~~~g~yVrV~G~v~-~f~g~~qi~~~~i 111 (136)
T 4gop_B 37 GQLTFVAVVRNISRNA-TNVAYSVEDGTGQIEVRQWLDSS--SDD-SSKASEIRNNVYVRVLGTLK-SFQNRRSISSGHM 111 (136)
T ss_dssp CEEEEEEEEEEEEECS-SEEEEEEECSSCEEEEEEECC-----------CCSCCTTCEEEEEEEEE-EETTEEEEEESEE
T ss_pred EEEEEEEEEEEEEecC-CeEEEEEECCCCCEEEEEecccC--Ccc-cccccccCCCCEEEEEEEEE-EeCCEEEEEEEEE
Confidence 4699999999999887 55557899999999998876531 100 01356799999999999974 4567778888877
Q ss_pred EEec
Q psy11418 171 TLLS 174 (553)
Q Consensus 171 ~il~ 174 (553)
..+.
T Consensus 112 r~v~ 115 (136)
T 4gop_B 112 RPVI 115 (136)
T ss_dssp EECS
T ss_pred EECC
Confidence 6653
|
| >3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.051 Score=46.32 Aligned_cols=79 Identities=24% Similarity=0.303 Sum_probs=62.8
Q ss_pred CcEEEEEEEEEeee-------cCCC--ceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccC
Q psy11418 90 NVTLSVAGRVHAIR-------ESGT--KLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK 160 (553)
Q Consensus 90 ~~~V~v~Gri~~~R-------~~g~--kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ 160 (553)
+..|.|.|+|.++- ..|+ ++.=+.|.|++|.|.+++-.+.. .. .+.+||+|.+.|.+.....
T Consensus 14 ~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a--------~~-~l~~Gdvv~i~g~vk~~~~ 84 (105)
T 3dm3_A 14 GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLT--------DI-DVGRGDYVRVRGYIREGYY 84 (105)
T ss_dssp SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGG--------GS-CCCTTCEEEEEEEEEECTT
T ss_pred CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECccc--------cc-ccCCCCEEEEEEEEEEccC
Confidence 35799999998764 2331 45568899999999999876542 11 6999999999998887778
Q ss_pred CceeEeeeeEEEeccCC
Q psy11418 161 GELSIIPKKLTLLSPCL 177 (553)
Q Consensus 161 ge~~l~~~~i~il~~~~ 177 (553)
|+++|.+.....+.+|.
T Consensus 85 g~~eL~~g~~~~i~~~~ 101 (105)
T 3dm3_A 85 GGLECTANYVEILKKGE 101 (105)
T ss_dssp SSEEEEEEEEEEEECCC
T ss_pred CCEEEEeCCceEEEecc
Confidence 89999999999998885
|
| >3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B | Back alignment and structure |
|---|
Probab=96.02 E-value=0.036 Score=49.06 Aligned_cols=78 Identities=12% Similarity=0.167 Sum_probs=57.3
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCE-EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeee
Q psy11418 91 VTLSVAGRVHAIRESGTKLMFYDLRGEGL-KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKK 169 (553)
Q Consensus 91 ~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~ 169 (553)
..|++.|+|.++.... .-.-+.|.|++| .|.+....+.. ... .....+..|+.|.|.|.+.. -.|...|.+..
T Consensus 32 ~~V~iVG~V~~~~~~~-~~~~~~ldD~TG~~I~~~~W~~~~--~~~--~~~~~~~~g~yVrV~G~l~~-f~g~~qi~~~~ 105 (132)
T 3kdf_D 32 SQVTIVGIIRHAEKAP-TNIVYKIDDMTAAPMDVRQWVDTD--DTS--SENTVVPPETYVKVAGHLRS-FQNKKSLVAFK 105 (132)
T ss_dssp CEEEEEEEEEEEEECS-SEEEEEEECSSSSCEEEEEEC-------------CCCCTTCEEEEEEEEEE-ETTEEEEEEEE
T ss_pred EEEEEEEEEEEEEEcC-CeEEEEEECCCCCEEEEEEEccCC--Ccc--cccccccCCCEEEEEEEEEe-ECCEEEEEEEE
Confidence 3699999999999887 555588999999 99999887532 111 12467999999999999764 45778888887
Q ss_pred EEEec
Q psy11418 170 LTLLS 174 (553)
Q Consensus 170 i~il~ 174 (553)
+..+.
T Consensus 106 ir~v~ 110 (132)
T 3kdf_D 106 IMPLE 110 (132)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 77653
|
| >3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.062 Score=45.02 Aligned_cols=78 Identities=22% Similarity=0.288 Sum_probs=57.2
Q ss_pred CcEEEEEEEEEeee-------cCCC--ceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccC
Q psy11418 90 NVTLSVAGRVHAIR-------ESGT--KLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK 160 (553)
Q Consensus 90 ~~~V~v~Gri~~~R-------~~g~--kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ 160 (553)
+..|+|.|+|.++- ..|+ ++.=+.|.|++|.|.+.+..+.. .. .+..||+|.|.|.+. ...
T Consensus 11 g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~~--------~~-~i~~Gdvv~i~g~v~-~~~ 80 (97)
T 3e0e_A 11 NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELA--------DF-EVKKGDIAEVSGYVK-QGY 80 (97)
T ss_dssp TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGGG--------GC-CCCTTCEEEEEEEEE-EC-
T ss_pred CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCcc--------cc-ccCCCCEEEEEEEEE-EcC
Confidence 35789999998863 1331 46668889999999999876532 01 699999999999774 446
Q ss_pred CceeEeeeeEEEeccCC
Q psy11418 161 GELSIIPKKLTLLSPCL 177 (553)
Q Consensus 161 ge~~l~~~~i~il~~~~ 177 (553)
|.++|.+.+...+.+|+
T Consensus 81 ~~~el~~g~~~~i~k~~ 97 (97)
T 3e0e_A 81 SGLEISVDNIGIIEKSL 97 (97)
T ss_dssp -CEEEEEEEEEEEECCC
T ss_pred CeEEEEECCCcEEEECC
Confidence 68999999988887774
|
| >2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.019 Score=65.71 Aligned_cols=112 Identities=13% Similarity=0.045 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhhhCCeEEEecceeccccCC----CCCc-ceeeccCCCCc-ceeeeeCHHHHHHHHHHc----cCC--cE
Q psy11418 215 AQIIAYVRRYLDSLGFLEVETPMMNMIAGG----ATAK-PFVTHHNDLNM-DLYMRIAPELYLKMLVVG----GLD--RV 282 (553)
Q Consensus 215 s~i~~~ir~fl~~~gF~EV~TPil~~~~gg----a~a~-~F~t~~~~~~~-~~~L~~Spql~lk~l~~~----g~~--rV 282 (553)
..+.+.+|+.|...||.|+.|..+.+..-- ...+ ++... |-... .-.||.|.=--+=..+.. +.. |+
T Consensus 496 ~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L~-NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~vrl 574 (795)
T 2rhq_B 496 QHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISLL-MPMSEAHATLRQSLLPHLIEATAYNVARKNKDVRL 574 (795)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEECS-SCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhCCCCCceEEEc-CCCchhhhhhhhccHHHHHHHHHHHhcCCCCCeEE
Confidence 345678999999999999999988643211 1122 23321 22222 246887642222222222 232 99
Q ss_pred EEEccccccCCCCCCccCCcceeeeEecc-------------CCHHHHHHHHHHHHhcc
Q psy11418 283 YEVGRQFRNEGIDLTHNPEFTTCEFYMAY-------------ADYNDLMHLTEDLISGR 328 (553)
Q Consensus 283 fei~~~FR~E~~~~~H~~EFt~lE~e~a~-------------~~~~~~m~~~e~li~~~ 328 (553)
||+|+|||.+..+..| +||+++..-++. .|+.|+...+|.++..+
T Consensus 575 FEiG~Vf~~d~~~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~l 632 (795)
T 2rhq_B 575 YEIGRVFFGNGEGELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKL 632 (795)
T ss_dssp EEEEEEEECCCTTSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHH
T ss_pred EEEeeEEecCCcccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 9999999975544367 999999877665 58999999999999877
|
| >3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.025 Score=62.53 Aligned_cols=112 Identities=11% Similarity=0.081 Sum_probs=75.6
Q ss_pred HHHHHHHHHhhhCCeEEEecceeccccC-----C---CCCcceeeccCCCCcc-eeeeeCHHHHHHHHHHccC-----Cc
Q psy11418 216 QIIAYVRRYLDSLGFLEVETPMMNMIAG-----G---ATAKPFVTHHNDLNMD-LYMRIAPELYLKMLVVGGL-----DR 281 (553)
Q Consensus 216 ~i~~~ir~fl~~~gF~EV~TPil~~~~g-----g---a~a~~F~t~~~~~~~~-~~L~~Spql~lk~l~~~g~-----~r 281 (553)
++.+.+|+.|...||.||.|+.+.+..- + ....++.. .|-...+ -.||.|.=--|=..+.... =|
T Consensus 395 ~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L-~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~vr 473 (589)
T 3l4g_B 395 KLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHI-SNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLK 473 (589)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBB-SSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCEE
T ss_pred HHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEE-cCCCchhHhHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 4567899999999999999999964210 0 00122322 1222223 4688774222222222222 28
Q ss_pred EEEEccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 282 Vfei~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
+||+|+|||.+..+.+|.+|+.++..-+... ++.++...++.++..+
T Consensus 474 lFEiG~Vf~~d~~~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~l 522 (589)
T 3l4g_B 474 LFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLL 522 (589)
T ss_dssp EEEEEEEEEECTTSTTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHHT
T ss_pred EEEeeeEEecCCccccCCccccEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 9999999998877678899999999877654 6999999999988776
|
| >3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.032 Score=53.55 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=69.8
Q ss_pred HHHHHHHHHhhhCCeEEEecceeccccCC------CCCcceeeccCCCCc-ceeeeeCHHHHHHHHHHc----cCC--cE
Q psy11418 216 QIIAYVRRYLDSLGFLEVETPMMNMIAGG------ATAKPFVTHHNDLNM-DLYMRIAPELYLKMLVVG----GLD--RV 282 (553)
Q Consensus 216 ~i~~~ir~fl~~~gF~EV~TPil~~~~gg------a~a~~F~t~~~~~~~-~~~L~~Spql~lk~l~~~----g~~--rV 282 (553)
++.+.+|+.|...||.||-|-.+++..-- ....+... .|-... --.||.|.=--|=..+.. +.. |+
T Consensus 8 ~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~~~~v~l-~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v~l 86 (213)
T 3ig2_A 8 KLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNLVML-LNPLSADLNCMRQTLLFGGLESIAHNANRKNADLKF 86 (213)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGCEEB-SSGGGCSCCEECSCSHHHHHHHHHHC------CCEE
T ss_pred HHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccCcCCeEEE-eCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCeeE
Confidence 56688999999999999999999643210 00112221 122222 346887743322222232 232 89
Q ss_pred EEEccccccCCCCC------CccCCcceeeeEecc-------------CCHHHHHHHHHHHHhcc
Q psy11418 283 YEVGRQFRNEGIDL------THNPEFTTCEFYMAY-------------ADYNDLMHLTEDLISGR 328 (553)
Q Consensus 283 fei~~~FR~E~~~~------~H~~EFt~lE~e~a~-------------~~~~~~m~~~e~li~~~ 328 (553)
||||+||+.++.+. .+..|..++-+-+++ .|+.|+...+|.++..+
T Consensus 87 FEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~l 151 (213)
T 3ig2_A 87 FEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRL 151 (213)
T ss_dssp EEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHT
T ss_pred EEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 99999999876432 234577888776655 37999999999999877
|
| >3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.046 Score=52.43 Aligned_cols=113 Identities=15% Similarity=0.089 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhhhCCeEEEecceeccccCC------CCCcceeeccCCCCcc-eeeeeCHHHH-HHHH---HHccCC--c
Q psy11418 215 AQIIAYVRRYLDSLGFLEVETPMMNMIAGG------ATAKPFVTHHNDLNMD-LYMRIAPELY-LKML---VVGGLD--R 281 (553)
Q Consensus 215 s~i~~~ir~fl~~~gF~EV~TPil~~~~gg------a~a~~F~t~~~~~~~~-~~L~~Spql~-lk~l---~~~g~~--r 281 (553)
.++.+.+|+.|...||.||-|-.+++..-- ....+.. -.|-...+ -.||.|.=-- |+.+ ...+.. |
T Consensus 7 ~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~v~-l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~~ 85 (213)
T 3ica_A 7 YKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVE-LMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSLY 85 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGCCB-CSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEEE
T ss_pred HHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCcCCeEE-ecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCee
Confidence 356788999999999999999999643210 0011111 12333333 4588874222 2222 123444 8
Q ss_pred EEEEccccccCCCCC------CccCCcceeeeEecc-------------CCHHHHHHHHHHHHhcc
Q psy11418 282 VYEVGRQFRNEGIDL------THNPEFTTCEFYMAY-------------ADYNDLMHLTEDLISGR 328 (553)
Q Consensus 282 Vfei~~~FR~E~~~~------~H~~EFt~lE~e~a~-------------~~~~~~m~~~e~li~~~ 328 (553)
+||||+||+.++.+. .+..|..++-.-+++ .|+.|+...+|.++..+
T Consensus 86 lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~l 151 (213)
T 3ica_A 86 LFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRV 151 (213)
T ss_dssp EEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHT
T ss_pred EEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 999999999765321 345677888776655 48999999999999887
|
| >1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.1 Score=44.85 Aligned_cols=74 Identities=15% Similarity=0.255 Sum_probs=56.0
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeee
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPK 168 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~ 168 (553)
.+..|++.|.|.+.-..- + +.++|++|.|+|-++.+... -..+++++-|.|.|.+-+.- +..+|.|.
T Consensus 36 Dd~~V~L~G~Iv~~~~~d-~---Y~F~D~TG~I~VeId~~~w~--------g~~v~p~~~Vri~GevDkd~-~~~eIdV~ 102 (109)
T 1nnx_A 36 DDTWVTLRGNIVERISDD-L---YVFKDASGTINVDIDHKRWN--------GVTVTPKDTVEIQGEVDKDW-NSVEIDVK 102 (109)
T ss_dssp SSEEEEEEEEEEEEEETT-E---EEEEETTEEEEEECCGGGST--------TCCCCTTSCEEEEEEEEEET-TEEEEEEE
T ss_pred CCCeEEEEEEEEEEeCCC-e---EEEECCCccEEEEEChhhcC--------CcccCCCCEEEEEEEECCCC-CceEEEEE
Confidence 567899999998765443 4 55699999999998765431 24689999999999998643 35688999
Q ss_pred eEEEecc
Q psy11418 169 KLTLLSP 175 (553)
Q Consensus 169 ~i~il~~ 175 (553)
.|+++.+
T Consensus 103 ~i~~~~~ 109 (109)
T 1nnx_A 103 QIRKVNP 109 (109)
T ss_dssp EEEEC--
T ss_pred EEEEccC
Confidence 9988753
|
| >3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.21 Score=52.27 Aligned_cols=77 Identities=19% Similarity=0.312 Sum_probs=63.1
Q ss_pred CcEEEEEEEEEee-e-cCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEee
Q psy11418 90 NVTLSVAGRVHAI-R-ESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIP 167 (553)
Q Consensus 90 ~~~V~v~Gri~~~-R-~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~ 167 (553)
...+.|.|.|.+. + ..| .=+|+.|.|+++.|.|++-... ..|......|..||.|.|.|.+.. | +|.+
T Consensus 284 ~~~~~v~G~V~~~P~~~~G-GHV~f~l~d~~~~i~c~ayept----k~fr~~vr~L~~GD~V~v~G~v~~---g--tLnv 353 (402)
T 3au7_A 284 YRSYRLRGRVTLEPYDIEG-GHVFFEIDTKFGSVKCAAFEPT----KQFRNVIRLLRKGDVVEVYGSMKK---D--TINL 353 (402)
T ss_dssp TCEEEEEEEEEEEEEEETT-TEEEEEEEETTEEEEEEECGGG----TTHHHHHTTCCTTCEEEEEEEEET---T--EEEE
T ss_pred CceEEEEEEEecCcEeccC-ceEEEEEEcCCCEEEEEEEccc----hHHHHHHhcCCCCCEEEEEEeecC---C--EEEE
Confidence 3579999999988 4 445 6689999999999999997642 357788899999999999999764 4 8999
Q ss_pred eeEEEeccC
Q psy11418 168 KKLTLLSPC 176 (553)
Q Consensus 168 ~~i~il~~~ 176 (553)
+++.+++-+
T Consensus 354 Ek~~v~~l~ 362 (402)
T 3au7_A 354 EKIQIVELA 362 (402)
T ss_dssp EEEEEEECC
T ss_pred EEEEEcccC
Confidence 999998653
|
| >2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A | Back alignment and structure |
|---|
Probab=93.22 E-value=0.39 Score=47.69 Aligned_cols=78 Identities=12% Similarity=0.171 Sum_probs=57.1
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCE-EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeee
Q psy11418 91 VTLSVAGRVHAIRESGTKLMFYDLRGEGL-KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKK 169 (553)
Q Consensus 91 ~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~ 169 (553)
..|++.|+|.++...+ .-.-+.|.|++| .|.+.+..+.. +. ......+..|++|.|.|.+.. -.|...|.+..
T Consensus 72 ~~V~ivG~V~~i~~~~-~~~~~~L~D~TG~~I~~k~W~~~~--~~--~~~~~~~~~G~yVrV~G~v~~-f~g~~qi~i~~ 145 (270)
T 2pi2_A 72 SQVTIVGIIRHAEKAP-TNIVYKIDDMTAAPMDVRQWVDTD--DT--SSENTVVPPETYVKVAGHLRS-FQNKKSLVAFK 145 (270)
T ss_dssp SEEEEEEEEEEEEECS-SEEEEEEECSSSSCEEEEEECC-----------CCCCCTTCEEEEEEEEEE-ETTEEEEEEEE
T ss_pred EEEEEEEEEEEEEecc-ceEEEEEECCCCCEEEEEEEcCcC--cc--cchhhcCCCCCEEEEEEEEEe-cCCeeEEEEEE
Confidence 3699999999998777 555678999999 89999886531 11 012457999999999999874 35667788877
Q ss_pred EEEec
Q psy11418 170 LTLLS 174 (553)
Q Consensus 170 i~il~ 174 (553)
|..+.
T Consensus 146 ir~v~ 150 (270)
T 2pi2_A 146 IMPLE 150 (270)
T ss_dssp EEECS
T ss_pred EEecC
Confidence 76654
|
| >2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* | Back alignment and structure |
|---|
Probab=91.99 E-value=0.2 Score=59.52 Aligned_cols=80 Identities=20% Similarity=0.235 Sum_probs=48.8
Q ss_pred CCcEEEEEEEEEeeec----CCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCcee
Q psy11418 89 ENVTLSVAGRVHAIRE----SGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~----~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
.|+.|+|+|.|.+++. .|+.++|+.|.|.+|.+.+++..+.+ ......|..+.+|.|+|++.+.. .+.
T Consensus 1041 ~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~~evvvf~~~~------~~~~~~l~~~~~~~v~G~v~~~~--~~~ 1112 (1220)
T 2hpi_A 1041 GKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRAY------EGVSPKLKEDIPLLVLAEVEKGE--ELR 1112 (1220)
T ss_dssp SSCEEEEEEEECCC------------CEEEEETTEEEEEC-------------------CTTCEEEEEEEEC-------C
T ss_pred CCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCCEEEEEcHHHH------HHHHHHhccCCEEEEEEEEEECC--CcE
Confidence 5678999999999884 34459999999999999999987643 34456689999999999998654 578
Q ss_pred EeeeeEEEeccC
Q psy11418 165 IIPKKLTLLSPC 176 (553)
Q Consensus 165 l~~~~i~il~~~ 176 (553)
|.+.++.-++..
T Consensus 1113 l~~~~i~~l~~~ 1124 (1220)
T 2hpi_A 1113 VLAQAVWTLEEV 1124 (1220)
T ss_dssp EEEEEEEEHHHH
T ss_pred EEEeeeecHHHH
Confidence 899998877654
|
| >1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* | Back alignment and structure |
|---|
Probab=91.48 E-value=0.55 Score=53.53 Aligned_cols=106 Identities=24% Similarity=0.114 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhhhCCeEEEecceecccc----CCCCCcceeeccCCCCc-ceeeeeCHHHHHHHHHH----cc-CC--c
Q psy11418 214 RAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGATAKPFVTHHNDLNM-DLYMRIAPELYLKMLVV----GG-LD--R 281 (553)
Q Consensus 214 rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga~a~~F~t~~~~~~~-~~~L~~Spql~lk~l~~----~g-~~--r 281 (553)
..++.+.+|+.|...||.|+-|-.+.+.. -+...+++... |-... .-.||.|.=--|=..+. .+ .. |
T Consensus 491 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L~-NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~vr 569 (785)
T 1b7y_B 491 PYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLLL-NPLAPEKAALRTHLFPGLVRVLKENLDLDRPERAL 569 (785)
T ss_dssp HHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEES-SCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCEE
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEEc-CCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCeE
Confidence 44567889999999999999988886431 00012233332 22222 23588764222222222 13 33 9
Q ss_pred EEEEccccccCCCCCCccCCcceeeeEecc------------CCHHHHHHHHHHHHhcc
Q psy11418 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAY------------ADYNDLMHLTEDLISGR 328 (553)
Q Consensus 282 Vfei~~~FR~E~~~~~H~~EFt~lE~e~a~------------~~~~~~m~~~e~li~~~ 328 (553)
+||+|+||| + +||+++..-++. .|+.|+...+|.++..+
T Consensus 570 lFEiG~Vf~-~-------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~l 620 (785)
T 1b7y_B 570 LFEVGRVFR-E-------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARL 620 (785)
T ss_dssp EEEEEEEES-S-------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHH
T ss_pred EEEEeeeec-c-------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHc
Confidence 999999999 2 889999887765 48999999999999877
|
| >1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.29 E-value=0.36 Score=41.46 Aligned_cols=79 Identities=14% Similarity=0.155 Sum_probs=56.2
Q ss_pred EEEEEEEEEee------e---cCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc----
Q psy11418 92 TLSVAGRVHAI------R---ESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT---- 158 (553)
Q Consensus 92 ~V~v~Gri~~~------R---~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t---- 158 (553)
..+|.|||.++ + ..| ++.=++|.|.+|.|++.+..+.. +. +...|..|+++.|.|--.+.
T Consensus 16 ~w~I~~rV~~k~~~r~~~~~~~~g-~~~~~~L~De~G~I~at~~~~~~---~~---f~~~l~eG~vy~Is~~~V~~a~~~ 88 (114)
T 1ynx_A 16 VWTIKARVSYKGEIKTWHNQRGDG-KLFNVNFLDTSGEIRATAFNDFA---TK---FNEILQEGKVYYVSKAKLQPAKPQ 88 (114)
T ss_dssp CCEEEEEEEEEEEEEEEECSSCEE-EEEEEEEEETTEEEEEEECHHHH---HH---HHHHSCSSSEEEEESCEEEECCTT
T ss_pred ceEEEEEEEEeccceEEecCCCCc-eEEEEEEECCCCeEEEEECHHHH---HH---HHhhcccCcEEEECCcEEEECCCC
Confidence 37888888854 1 235 78889999999999999976532 22 34569999999999743322
Q ss_pred ---cCCceeEeeeeEEEeccCC
Q psy11418 159 ---KKGELSIIPKKLTLLSPCL 177 (553)
Q Consensus 159 ---~~ge~~l~~~~i~il~~~~ 177 (553)
-.+.++|....-+.+.+|.
T Consensus 89 y~~~~~~yei~f~~~T~I~~~~ 110 (114)
T 1ynx_A 89 FTNLTHPYELNLDRDTVIEECF 110 (114)
T ss_dssp TSSSSSCEEEEECSSCEEEESC
T ss_pred cccCCCCEEEEECCCCEEEECC
Confidence 1457788777777777664
|
| >2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A | Back alignment and structure |
|---|
Probab=90.85 E-value=1.2 Score=37.85 Aligned_cols=78 Identities=10% Similarity=-0.023 Sum_probs=57.2
Q ss_pred CcEEEEEEEEEeeec--CCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEee
Q psy11418 90 NVTLSVAGRVHAIRE--SGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIP 167 (553)
Q Consensus 90 ~~~V~v~Gri~~~R~--~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~ 167 (553)
+..|.+.|+|.++-. .|+....+.|.|.+|.|-+++..+.. ...+..||+|.|.|-..+.-.|.++|.+
T Consensus 15 ~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~I~~t~W~~~~---------~~~~~~G~~V~i~n~~v~~~~G~~~L~v 85 (109)
T 2kbn_A 15 GQWANLKAKVIQLWENTHESISQVGLLGDETGIIKFTIWKNAE---------LPLLEQGESYLLRSVVVGEYNDRFQVQV 85 (109)
T ss_dssp TCEEEEEEEEEEEEECCCSSEEEEEEEECTTCCEEEEEEGGGC---------CCCCCTTCEEEEEEEEEEEETTEEEEEE
T ss_pred CCcEEEEEEEEEeEcCCCCeEEEEEEEECCCCeEEEEEECccc---------ccccCCCCEEEEEEEEEEEECCEEEEEE
Confidence 456999999998753 33345568899999999999987421 3468999999999544444568899988
Q ss_pred eeEEEeccC
Q psy11418 168 KKLTLLSPC 176 (553)
Q Consensus 168 ~~i~il~~~ 176 (553)
..+..+.+.
T Consensus 86 ~~~~~I~~~ 94 (109)
T 2kbn_A 86 NKNSSIEKL 94 (109)
T ss_dssp CSSSEEEEC
T ss_pred CCceEEEEC
Confidence 877655543
|
| >2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=90.70 E-value=1.5 Score=37.10 Aligned_cols=76 Identities=16% Similarity=0.278 Sum_probs=54.6
Q ss_pred EEEEEEEEEee-----ecCCC--ceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE-eecccccCCce
Q psy11418 92 TLSVAGRVHAI-----RESGT--KLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT-GSPGKTKKGEL 163 (553)
Q Consensus 92 ~V~v~Gri~~~-----R~~g~--kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~-G~~~~t~~ge~ 163 (553)
.|++.|+|.++ ++.|+ .+.=+.|.|.+|.|.+.+-.+. +..||+|.|. |.+ ..-.|.+
T Consensus 15 ~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~I~~tlW~~~-------------l~~Gdvv~i~ng~v-~~~~g~~ 80 (106)
T 2k75_A 15 YVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGKQ-------------LQDSDVVRIDNARV-AQFNGYL 80 (106)
T ss_dssp EEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEESSC-------------CCTTEEEEEEEEEE-EEETTEE
T ss_pred eEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCeEEEEEEcCc-------------cCCCCEEEEEeeEE-eEECCEE
Confidence 46777777664 23452 2666788899999998887641 8999999999 554 3457889
Q ss_pred eEeeeeEEEeccCCCCCC
Q psy11418 164 SIIPKKLTLLSPCLHMLP 181 (553)
Q Consensus 164 ~l~~~~i~il~~~~~~lP 181 (553)
+|.+..+..+.+.....|
T Consensus 81 ~L~v~~~~~I~~~~~~~~ 98 (106)
T 2k75_A 81 SLSVGDSSRIESVNVNIP 98 (106)
T ss_dssp EEEECTTSEEEECCSCCC
T ss_pred EEEECCcEEEEECCCCCc
Confidence 999987766666655444
|
| >1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 | Back alignment and structure |
|---|
Probab=89.39 E-value=2.4 Score=36.36 Aligned_cols=74 Identities=16% Similarity=0.210 Sum_probs=54.1
Q ss_pred EEEEEEEEEee---e----cCCC-ceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE-eecccccCCc
Q psy11418 92 TLSVAGRVHAI---R----ESGT-KLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT-GSPGKTKKGE 162 (553)
Q Consensus 92 ~V~v~Gri~~~---R----~~g~-kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~-G~~~~t~~ge 162 (553)
.|.+.|+|.++ | +.|+ +..=+.|.|.+|.|.+.+..+.. ..+..||+|.|+ |.+. .-.|.
T Consensus 14 ~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~I~~tlW~~~~----------~~~~~G~vv~i~~g~v~-~~~g~ 82 (119)
T 1o7i_A 14 SVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHA----------GSIKEGQVVKIENAWTT-AFKGQ 82 (119)
T ss_dssp SEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGGT----------TCCCTTCEEEEEEEEEE-EETTE
T ss_pred cEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCEEEEEEECChh----------hcCCCCCEEEEEeEEEE-EeCCE
Confidence 48888888877 4 3453 56678888999999999886532 247999999999 6654 34677
Q ss_pred eeEeeeeEEEeccC
Q psy11418 163 LSIIPKKLTLLSPC 176 (553)
Q Consensus 163 ~~l~~~~i~il~~~ 176 (553)
++|.+.....+.++
T Consensus 83 ~qL~i~~~~~i~~~ 96 (119)
T 1o7i_A 83 VQLNAGSKTKIAEA 96 (119)
T ss_dssp EEEEECTTCEEEEC
T ss_pred EEEEECCCEEEEEc
Confidence 88888775444443
|
| >3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404} | Back alignment and structure |
|---|
Probab=89.22 E-value=2 Score=41.18 Aligned_cols=80 Identities=19% Similarity=0.147 Sum_probs=55.9
Q ss_pred cEEEEEEEEEeeecCC-------CceEEEEEEeCCE---EEEEEEecccCCCHHHHHHH---hccCCCCcEEEEEeeccc
Q psy11418 91 VTLSVAGRVHAIRESG-------TKLMFYDLRGEGL---KIQVMANARMYQSEEEFASD---LVKIKRGDIIGVTGSPGK 157 (553)
Q Consensus 91 ~~V~v~Gri~~~R~~g-------~kl~Fi~l~d~~~---~iQvv~~~~~~~~~~~~~~~---~~~l~~gd~V~v~G~~~~ 157 (553)
..|.|.|.|..++-.- ....|+.|-|++| .|.|.++... |... +.....|.+|.|+|.+..
T Consensus 86 ~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~------~~~~gl~l~~~~~G~iV~VkG~i~~ 159 (220)
T 3kf8_A 86 NQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQ------FKEVGLTLDKKNYGKIVELEGEIYN 159 (220)
T ss_dssp CEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHH------HHTTTCCTTSCCTTCEEEEEEEEEE
T ss_pred EEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHH------hhccCccccccCCCeEEEEEEEEEe
Confidence 4699999999997543 1358899999987 4777665432 2111 112458999999999864
Q ss_pred cc-------CCceeEeeeeEEEeccC
Q psy11418 158 TK-------KGELSIIPKKLTLLSPC 176 (553)
Q Consensus 158 t~-------~ge~~l~~~~i~il~~~ 176 (553)
-. .-+-+|.++.+.+++..
T Consensus 160 ~r~~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 160 WYDSINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp CCCSTTTTSCCCEEEEEEEEEEEESS
T ss_pred eccccccccccceEEEEEEEEEeccC
Confidence 21 11569999999999754
|
| >1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A | Back alignment and structure |
|---|
Probab=89.09 E-value=0.95 Score=43.79 Aligned_cols=79 Identities=20% Similarity=0.221 Sum_probs=56.4
Q ss_pred EEEEEEEEEee---e------cCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc----
Q psy11418 92 TLSVAGRVHAI---R------ESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT---- 158 (553)
Q Consensus 92 ~V~v~Gri~~~---R------~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t---- 158 (553)
.++|.|||.++ | ..| ++.-++|.|.+|.|++.+..+.. + .+...|..|+++.+.+--.+.
T Consensus 20 ~w~I~~rV~~k~~~r~~~~~~~~g-~~~~~~L~De~G~I~at~~~~~~---~---~~~~~l~~G~vy~i~~~~v~~~~~~ 92 (246)
T 1jmc_A 20 KWTICARVTNKSQIRTWSNSRGEG-KLFSLELVDESGEIRATAFNEQV---D---KFFPLIEVNKVYYFSKGTLKIANKQ 92 (246)
T ss_dssp CCEEEEEEEEECCCEEEECSSCEE-EEEEEEEECSSCEEEEEEEHHHH---H---HHGGGCCTTCEEEEECCEEEECCGG
T ss_pred ceEEEEEEEEecccceeeCCCCCc-eEEEEEEECCCCeEEEEEChHHH---H---HhhhhcccCCEEEECCCEEEEcccC
Confidence 47899999875 3 234 67778899999999999986532 2 345679999999999743322
Q ss_pred ---cCCceeEeeeeEEEeccCC
Q psy11418 159 ---KKGELSIIPKKLTLLSPCL 177 (553)
Q Consensus 159 ---~~ge~~l~~~~i~il~~~~ 177 (553)
-.+.++|....-+.+.+|.
T Consensus 93 y~~~~~~~ei~~~~~T~I~~~~ 114 (246)
T 1jmc_A 93 FTAVKNDYEMTFNNETSVMPCE 114 (246)
T ss_dssp GCCCCCSEEEECCTTCEEEECC
T ss_pred cccCCCCEEEEEcCCcEEEEcc
Confidence 2577888887666566654
|
| >3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A | Back alignment and structure |
|---|
Probab=86.20 E-value=3.8 Score=35.54 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=48.7
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEe-CCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEee
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRG-EGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIP 167 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d-~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~ 167 (553)
.|++|++-|+|.+++..| +. +.|.+ +++.++|.++.... ..++.+|.|.|++.. ..+|.+
T Consensus 21 vgk~VrivGkV~~~~~~g-~~--~~l~s~Dg~~Vtv~l~~p~~------------~~l~~~vEViG~V~~----~~tI~~ 81 (121)
T 3kdf_A 21 IDKPVCFVGRLEKIHPTG-KM--FILSDGEGKNGTIELMEPLD------------EEISGIVEVVGRVTA----KATILC 81 (121)
T ss_dssp TTCEEEEEEEEEEECTTS-SE--EEEECTTSCEEEEECSSCCS------------SCCCSEEEEEEEECT----TSCEEE
T ss_pred CCCeEEEEEEEEEEcCCC-CE--EEEEeCCCCEEEEEeCCCCC------------cccCcEEEEEEEECC----CCeEEE
Confidence 678999999999999888 43 23343 44678887765321 122559999999983 357888
Q ss_pred eeEEEeccC
Q psy11418 168 KKLTLLSPC 176 (553)
Q Consensus 168 ~~i~il~~~ 176 (553)
..+.-++..
T Consensus 82 ~~~~~fg~~ 90 (121)
T 3kdf_A 82 TSYVQFKED 90 (121)
T ss_dssp EEEEECCCS
T ss_pred EEEEecCCC
Confidence 888777644
|
| >3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=83.18 E-value=5.6 Score=36.02 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=50.4
Q ss_pred EEEEEEEEEe---eecC--CCceEEEEEE------eC--------CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 92 TLSVAGRVHA---IRES--GTKLMFYDLR------GE--------GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 92 ~V~v~Gri~~---~R~~--g~kl~Fi~l~------d~--------~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.|+|.|||.. +|.. |..++-+.|. |. +..+.|++-.+. .+ ...+.|..||.|.|+
T Consensus 10 ~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~----Ae--~~~~~l~KG~~V~Ve 83 (158)
T 3tqy_A 10 KVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRL----AE--IVGEYLRKGSKIYIE 83 (158)
T ss_dssp EEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHH----HH--HHHHHCCTTCEEEEE
T ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHH----HH--HHHhhcCCCCEEEEE
Confidence 5889999986 5543 4344433332 21 235677776642 12 234569999999999
Q ss_pred eeccc----ccCCc----eeEeeeeEEEeccC
Q psy11418 153 GSPGK----TKKGE----LSIIPKKLTLLSPC 176 (553)
Q Consensus 153 G~~~~----t~~ge----~~l~~~~i~il~~~ 176 (553)
|.+.. .+.|. ++|.|.+|.+|...
T Consensus 84 G~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k 115 (158)
T 3tqy_A 84 GSLRTRKWQDKNGVDRYTTEIIANEMHMLDNR 115 (158)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEEEEEECC--
T ss_pred EEEEeeeEECCCCCEEEEEEEEEeEEEEccCC
Confidence 99863 23443 78999999999643
|
| >3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A | Back alignment and structure |
|---|
Probab=81.77 E-value=13 Score=31.77 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=39.3
Q ss_pred EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc-ccC-CceeEeeeeEEEeccCCCCCC
Q psy11418 120 KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK-TKK-GELSIIPKKLTLLSPCLHMLP 181 (553)
Q Consensus 120 ~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~-t~~-ge~~l~~~~i~il~~~~~~lP 181 (553)
.|+|++..+. .++ .+.+..|+-|.|+|.+.. ++. ..++|+++.|+.+++....-|
T Consensus 48 ~i~vv~~Gk~----AE~---~~~l~kGs~V~VeGrL~trs~~G~kl~l~a~~Ie~l~~~~~~~~ 104 (115)
T 3fhw_A 48 TISAVALGDL----ALL---LADTPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAGSMGRDP 104 (115)
T ss_dssp EEEEEEETHH----HHH---HTTCCTTCEEEEEEEEEESSTTCSSEEEEEEEEEECCCSCCC--
T ss_pred EEEEEEEhHH----HHh---hhccCCCCEEEEEEEEEECCCCCCEEEEEEEEEEEcCCCCCCCC
Confidence 3888887653 222 377999999999999873 433 357899999999976644333
|
| >3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} | Back alignment and structure |
|---|
Probab=81.15 E-value=3 Score=47.58 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=68.2
Q ss_pred HHHHHHHhhhCCeEEEecceecccc-----CCCCCcceeeccCCCCcc-eeeeeCHHHHHHHHHH----ccCC--cEEEE
Q psy11418 218 IAYVRRYLDSLGFLEVETPMMNMIA-----GGATAKPFVTHHNDLNMD-LYMRIAPELYLKMLVV----GGLD--RVYEV 285 (553)
Q Consensus 218 ~~~ir~fl~~~gF~EV~TPil~~~~-----gga~a~~F~t~~~~~~~~-~~L~~Spql~lk~l~~----~g~~--rVfei 285 (553)
.+.+|+.|...||.||-|-.+.+.. +.. ..+... .|-...+ -.||.|.=--|=..+. .+.. |+|||
T Consensus 495 ~~~~r~~l~~~G~~Evitysf~~~~~~~~~~~~-~~~v~l-~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFEi 572 (795)
T 3pco_B 495 LKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPG-VEALLL-PSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFES 572 (795)
T ss_dssp HHHHHHHHHHTTCEECCCCSEECHHHHHHHSSS-CCCCBC-SSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEEEE
T ss_pred HHHHHHHHHHCCCeeeeccCcCCHHHHHhhCCC-CCeEEE-cCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEe
Confidence 4578999999999999999996421 111 112211 2333333 4588874322211222 2333 89999
Q ss_pred ccccccCCCCCCccCCcceeeeEecc-------------CCHHHHHHHHHHHHhcc
Q psy11418 286 GRQFRNEGIDLTHNPEFTTCEFYMAY-------------ADYNDLMHLTEDLISGR 328 (553)
Q Consensus 286 ~~~FR~E~~~~~H~~EFt~lE~e~a~-------------~~~~~~m~~~e~li~~~ 328 (553)
|+||+.++....+..|..++-+-+++ .|+.|+...+|.++..+
T Consensus 573 G~Vf~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~l 628 (795)
T 3pco_B 573 GLRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLT 628 (795)
T ss_dssp EEEEEECTTSSTTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTS
T ss_pred eeEEecCCCcccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHHc
Confidence 99998765433444566666655443 47999999999999877
|
| >3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=80.73 E-value=6.8 Score=33.32 Aligned_cols=79 Identities=16% Similarity=0.368 Sum_probs=48.7
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE-e----------CCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeec
Q psy11418 92 TLSVAGRVHA---IRE--SGTKLMFYDLR-G----------EGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSP 155 (553)
Q Consensus 92 ~V~v~Gri~~---~R~--~g~kl~Fi~l~-d----------~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~ 155 (553)
.|.|.|+|.+ +|. .|..++-+.|. + .+..++|++-.+. .+ ...+.|..||.|.|+|.+
T Consensus 7 ~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~----Ae--~~~~~l~KG~~V~V~G~l 80 (116)
T 3vdy_A 7 QVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKT----AE--NTALYCQKGSLVGVSGRI 80 (116)
T ss_dssp CEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHH----HH--HHHHHCCTTCEEEEEEEE
T ss_pred EEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCCCCccccEEEEEEEECHH----HH--HHHHhCCCCCEEEEEEEE
Confidence 4788888876 453 34334433332 1 1235888877652 12 234569999999999998
Q ss_pred ccc----cCCc----eeEeeeeEEEeccC
Q psy11418 156 GKT----KKGE----LSIIPKKLTLLSPC 176 (553)
Q Consensus 156 ~~t----~~ge----~~l~~~~i~il~~~ 176 (553)
... +.|+ ++|.|++|.+|++.
T Consensus 81 ~~~~~~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 81 QTRSYENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp EEEEEC----CCEEEEEEEEEEEEECC--
T ss_pred EeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 632 3343 68999999998654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 553 | ||||
| d1c0aa3 | 346 | d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synt | 2e-40 | |
| d1c0aa3 | 346 | d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synt | 5e-25 | |
| d1l0wa3 | 356 | d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synt | 5e-36 | |
| d1l0wa3 | 356 | d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synt | 1e-21 | |
| d1e1oa2 | 342 | d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS | 6e-36 | |
| d1e1oa2 | 342 | d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS | 4e-26 | |
| d1n9wa2 | 304 | d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (As | 2e-26 | |
| d1n9wa2 | 304 | d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (As | 6e-18 | |
| d1nnha_ | 293 | d.104.1.1 (A:) Hypothetical protein PF1951 {Archae | 2e-26 | |
| d1nnha_ | 293 | d.104.1.1 (A:) Hypothetical protein PF1951 {Archae | 6e-15 | |
| d1eova2 | 353 | d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (As | 5e-26 | |
| d1eova2 | 353 | d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (As | 8e-17 | |
| d1e1oa1 | 143 | b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) | 6e-26 | |
| d1e1oa1 | 143 | b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) | 1e-10 | |
| d1b8aa2 | 335 | d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (As | 7e-25 | |
| d1b8aa2 | 335 | d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (As | 9e-18 | |
| d1eova1 | 134 | b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspR | 4e-12 | |
| d1n9wa1 | 93 | b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) | 2e-10 | |
| d1b8aa1 | 103 | b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS | 3e-07 |
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 147 bits (373), Expect = 2e-40
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 1/172 (0%)
Query: 179 MLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMM 238
+LP V +E R + RYLDL + + RA+I + VRR++D GFL++ETPM+
Sbjct: 1 VLPLDSNHVNTEEARLKYRYLDLR-RPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPML 59
Query: 239 NMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTH 298
V + +P+L+ ++L++ G DR Y++ + FR+E +
Sbjct: 60 TKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADR 119
Query: 299 NPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDRNRPCVMANARMYQSEEEF 350
PEFT + ++ + + E L+ + + M +E E
Sbjct: 120 QPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAER 171
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 104 bits (259), Expect = 5e-25
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 393 MLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMM 452
+LP V +E R + RYLDL + + RA+I + VRR++D GFL++ETPM+
Sbjct: 1 VLPLDSNHVNTEEARLKYRYLDLR-RPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPML 59
Query: 453 NMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKSTHGSYKVTYH 497
V + +P+L+ + S Y+
Sbjct: 60 TKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYY 104
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 135 bits (341), Expect = 5e-36
Identities = 40/138 (28%), Positives = 76/138 (55%), Gaps = 1/138 (0%)
Query: 189 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAK 248
+E R + RYLDL R++ +R ++I + +LD GF++VETP +
Sbjct: 19 SEELRLKYRYLDL-RRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARD 77
Query: 249 PFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFY 308
V + ++ + + +P+L+ +ML+V GLDR +++ R FR+E + P+FT +
Sbjct: 78 FLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLE 137
Query: 309 MAYADYNDLMHLTEDLIS 326
M++ + D++ L E L++
Sbjct: 138 MSFVEVEDVLELNERLMA 155
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 94.5 bits (234), Expect = 1e-21
Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 403 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAK 462
+E R + RYLDL R++ +R ++I + +LD GF++VETP +
Sbjct: 19 SEELRLKYRYLDL-RRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARD 77
Query: 463 PFVTHHNDLNMDLYMRIAPELYLKSTHGSYKVTYHPDGP-----ESGSPVEIDFTP 513
V + ++ + + +P+L+ + + Y + + + DFT
Sbjct: 78 FLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQ 133
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Score = 135 bits (340), Expect = 6e-36
Identities = 84/135 (62%), Positives = 113/135 (83%)
Query: 189 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAK 248
D+E R+RQRYLDL+ N++ R F+VR++I+A +R+++ + GF+EVETPMM +I GGA+A+
Sbjct: 1 DQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASAR 60
Query: 249 PFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFY 308
PF+THHN L++D+Y+RIAPELYLK LVVGG +RV+E+ R FRNEGI + HNPEFT E Y
Sbjct: 61 PFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELY 120
Query: 309 MAYADYNDLMHLTED 323
MAYADY+DL+ LTE
Sbjct: 121 MAYADYHDLIELTES 135
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Score = 107 bits (267), Expect = 4e-26
Identities = 50/87 (57%), Positives = 73/87 (83%)
Query: 403 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAK 462
D+E R+RQRYLDL+ N++ R F+VR++I+A +R+++ + GF+EVETPMM +I GGA+A+
Sbjct: 1 DQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASAR 60
Query: 463 PFVTHHNDLNMDLYMRIAPELYLKSTH 489
PF+THHN L++D+Y+RIAPELYLK
Sbjct: 61 PFITHHNALDLDMYLRIAPELYLKRLV 87
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 107 bits (268), Expect = 2e-26
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 197 RYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHND 256
RY+ L E+ R V+A ++ RRYLD F E+ TP ++ GA + +
Sbjct: 2 RYVTLR-GEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPK--VVRAGAEGGSGLFGVDY 58
Query: 257 LNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRN-EGIDLTHNPEFTTCEFYMAY-ADY 314
Y+ +P+LY K ++VG +RVYEV +R E H E+ + + M + AD
Sbjct: 59 FEKRAYLAQSPQLY-KQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADE 117
Query: 315 NDLMHLTEDLIS 326
DLM L E L++
Sbjct: 118 EDLMRLEEALLA 129
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 82.5 bits (203), Expect = 6e-18
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 411 RYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHND 470
RY+ L E+ R V+A ++ RRYLD F E+ TP ++ GA + +
Sbjct: 2 RYVTLR-GEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPK--VVRAGAEGGSGLFGVDY 58
Query: 471 LNMDLYMRIAPELYLKSTHGSYKVTYHP 498
Y+ +P+LY + G ++ Y
Sbjct: 59 FEKRAYLAQSPQLYKQIMVGVFERVYEV 86
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 107 bits (267), Expect = 2e-26
Identities = 25/137 (18%), Positives = 57/137 (41%), Gaps = 9/137 (6%)
Query: 199 LDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLN 258
++++ + I ++ +I+ Y+ + GF + +++ I P
Sbjct: 3 VEII-SREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAE 61
Query: 259 MD-----LYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGI---DLTHNPEFTTCEFYMA 310
++ + + + L+ ++ + GL +++ + R E D H EFT +F +
Sbjct: 62 VEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVE 121
Query: 311 YADYNDLMHLTEDLISG 327
A D+M L E L+ G
Sbjct: 122 RAKMEDIMRLIERLVYG 138
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 73.2 bits (179), Expect = 6e-15
Identities = 8/68 (11%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 413 LDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLN 472
++++ + I ++ +I+ Y+ + GF + +++ I P
Sbjct: 3 VEII-SREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAE 61
Query: 473 MDLYMRIA 480
+++Y
Sbjct: 62 VEIYGVKM 69
|
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 107 bits (267), Expect = 5e-26
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 5/145 (3%)
Query: 182 HMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI 241
V + +TR R +DL + F ++A + R YL + F EV TP +
Sbjct: 16 AAGLPVVNLDTRLDYRVIDLR-TVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGA 74
Query: 242 AGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNP 300
+ F + Y+ +P+ + L+V +RVYE+G FR E + H
Sbjct: 75 PSEGGSSVFEVTY--FKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMT 132
Query: 301 EFTTCEFYMAYAD-YNDLMHLTEDL 324
EFT + MA+ + Y++++ +L
Sbjct: 133 EFTGLDMEMAFEEHYHEVLDTLSEL 157
|
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.5 bits (195), Expect = 8e-17
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 396 HMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI 455
V + +TR R +DL + F ++A + R YL + F EV TP +
Sbjct: 16 AAGLPVVNLDTRLDYRVIDLR-TVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGA 74
Query: 456 AGGATAKPFVTHHNDLNMDLYMRIAPELY 484
+ F + Y+ +P+
Sbjct: 75 PSEGGSSVFEVTY--FKGKAYLAQSPQFN 101
|
| >d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Score = 101 bits (252), Expect = 6e-26
Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 4/142 (2%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLE-NVTLSVAGRV 99
++ R R + +++QG +P+ F + + E++ + ++ N+ +SVAGR+
Sbjct: 5 NDELRNRREKLAALRQQG-VAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRM 63
Query: 100 HAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK 159
R G K F L+ G +IQ+ R E + K GDIIG G+ KT+
Sbjct: 64 MTRRIMG-KASFVTLQDVGGRIQLYVA-RDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQ 121
Query: 160 KGELSIIPKKLTLLSPCLHMLP 181
GELSI +L LL+ L LP
Sbjct: 122 TGELSIHCTELRLLTKALRPLP 143
|
| >d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Score = 57.7 bits (139), Expect = 1e-10
Identities = 28/101 (27%), Positives = 39/101 (38%)
Query: 295 DLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDRNRPCVMANARMYQSEEEFASDL 354
D N E + ++ A + +D + AR E +
Sbjct: 43 DAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQF 102
Query: 355 VKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLP 395
K GDIIG G+ KT+ GELSI +L LL+ L LP
Sbjct: 103 KKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLP 143
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 103 bits (257), Expect = 7e-25
Identities = 39/184 (21%), Positives = 76/184 (41%), Gaps = 5/184 (2%)
Query: 189 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAK 248
+ +TR R++DL + F +R+ + VR + GF+E+ TP + A +
Sbjct: 13 ELDTRLNNRFMDLR-RPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTE 71
Query: 249 PFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTH--NPEFTTCE 306
F + + + ++ +P+LY ++++ GLDRVYE+ FR E + T N ++
Sbjct: 72 LFPMKYFEEDA--FLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDS 129
Query: 307 FYMAYADYNDLMHLTEDLISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVT 366
D ++M E L++ + EE ++ + +
Sbjct: 130 EMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKLPFPRVSYDKALEIL 189
Query: 367 GSPG 370
G G
Sbjct: 190 GDLG 193
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 82.6 bits (203), Expect = 9e-18
Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 403 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAK 462
+ +TR R++DL + F +R+ + VR + GF+E+ TP + A +
Sbjct: 13 ELDTRLNNRFMDLR-RPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTE 71
Query: 463 PFVTHHNDLNMDLYMRIAPELYLKSTHGSYKVTYH 497
F + + + ++ +P+LY + S +
Sbjct: 72 LFPMKYFEEDA--FLAESPQLYKEIMMASGLDRVY 104
|
| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 134 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.6 bits (149), Expect = 4e-12
Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 10/131 (7%)
Query: 58 GPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGE 117
G P + + + K+ DL +A+ + + RVH R+ G L F LR +
Sbjct: 6 GKLPLIQSRDSDRTGQKRV-KFVDLDEAK-DSDKEVLFRARVHNTRQQGATLAFLTLRQQ 63
Query: 118 GLKIQVMANARMYQSEEEFASDLVK-IKRGDIIGVTGSPGKTKK-------GELSIIPKK 169
IQ + A + + + I+ V G K + L I K
Sbjct: 64 ASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITK 123
Query: 170 LTLLSPCLHML 180
+ +S L
Sbjct: 124 IYTISETPEAL 134
|
| >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 55.2 bits (133), Expect = 2e-10
Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 18/106 (16%)
Query: 78 KYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFA 137
DL + + G +H R+ G ++ F LR +QV+
Sbjct: 4 LVRDLKA---HVGQEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQVVTGGLK-------- 51
Query: 138 SDLVKIKRGDIIGVTGSPGKTKK--GELSIIPKKLTLLSPCLHMLP 181
+ V G + K G L + K++ +LSP L P
Sbjct: 52 ----LPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTP 93
|
| >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 47.0 bits (111), Expect = 3e-07
Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 80 SDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASD 139
S++ + + V + AG V +++ G + F +R +Q+ A + + E
Sbjct: 8 SEITEELNGQKVKV--AGWVWEVKDLG-GIKFLWIRDRDGIVQITAP--KKKVDPELFKL 62
Query: 140 LVKIKRGDIIGVTGSPGKTKKGELS--IIPKKLTLLS 174
+ K++ D++ V G T K +L I+P+K+ +L+
Sbjct: 63 IPKLRSEDVVAVEGVVNFTPKAKLGFEILPEKIVVLN 99
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 553 | |||
| d1c0aa3 | 346 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 100.0 | |
| d1e1oa2 | 342 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 100.0 | |
| d1eova2 | 353 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 100.0 | |
| d1l0wa3 | 356 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1b8aa2 | 335 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 100.0 | |
| d1nnha_ | 293 | Hypothetical protein PF1951 {Archaeon Pyrococcus f | 100.0 | |
| d1e1oa1 | 143 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 99.98 | |
| d1n9wa2 | 304 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.97 | |
| d1e1oa2 | 342 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 99.87 | |
| d1l0wa3 | 356 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.86 | |
| d1b8aa2 | 335 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 99.86 | |
| d1c0aa3 | 346 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 99.85 | |
| d1eova2 | 353 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 99.84 | |
| d1b8aa1 | 103 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 99.75 | |
| d1n9wa2 | 304 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.73 | |
| d1n9wa1 | 93 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.72 | |
| d1nnha_ | 293 | Hypothetical protein PF1951 {Archaeon Pyrococcus f | 99.72 | |
| d1eova1 | 134 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 99.7 | |
| d1l0wa1 | 104 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.68 | |
| d1c0aa1 | 106 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 99.67 | |
| d1e1oa1 | 143 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 98.52 | |
| d1z7ma1 | 318 | ATP phosphoribosyltransferase regulatory subunit H | 98.5 | |
| d1qe0a2 | 325 | Histidyl-tRNA synthetase (HisRS) {Staphylococcus a | 98.28 | |
| d1wu7a2 | 327 | Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop | 98.19 | |
| d1nyra4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a | 98.18 | |
| d1jjca_ | 266 | Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS | 98.16 | |
| d1h4vb2 | 324 | Histidyl-tRNA synthetase (HisRS) {Thermus thermoph | 98.1 | |
| d1kmma2 | 322 | Histidyl-tRNA synthetase (HisRS) {Escherichia coli | 98.01 | |
| d1b8aa1 | 103 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 97.92 | |
| d1qf6a4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Escherichia coli | 97.84 | |
| d1nj8a3 | 268 | Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc | 97.83 | |
| d1hc7a2 | 272 | Prolyl-tRNA synthetase (ProRS) {Thermus thermophil | 97.76 | |
| d1n9wa1 | 93 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 97.72 | |
| d1eova1 | 134 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 97.68 | |
| d1c0aa1 | 106 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 97.57 | |
| d1usya_ | 275 | ATP phosphoribosyltransferase regulatory subunit H | 97.5 | |
| d1l0wa1 | 104 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 97.49 | |
| d1b76a2 | 331 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 97.38 | |
| d1nj1a3 | 265 | Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth | 97.35 | |
| d1seta2 | 311 | Seryl-tRNA synthetase (SerRS) {Thermus thermophilu | 96.83 | |
| d1nnxa_ | 106 | Hypothetical protein YgiW {Escherichia coli [TaxId | 95.64 | |
| d2pi2a1 | 128 | Replication protein A 32 KDa subunit (RPA32) fragm | 95.3 | |
| d1o7ia_ | 115 | Archaeal ssDNA-binding protein {Archaeon Sulfolobu | 95.14 | |
| d1jmca1 | 116 | Replication protein A 70 KDa subunit (RPA70) {Huma | 94.39 | |
| d1gm5a2 | 180 | RecG "wedge" domain {Thermotoga maritima [TaxId: 2 | 89.07 | |
| d1jjcb5 | 207 | Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, | 88.82 | |
| d2pi2e1 | 115 | Replication protein A 14 KDa (RPA14) subunit {Huma | 88.31 | |
| d1v1qa_ | 111 | Primosomal replication protein N, PriB {Escherichi | 86.02 | |
| d1atia2 | 394 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 84.91 |
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.3e-40 Score=339.25 Aligned_cols=156 Identities=26% Similarity=0.459 Sum_probs=143.9
Q ss_pred CCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCc
Q psy11418 180 LPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNM 259 (553)
Q Consensus 180 lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~ 259 (553)
||.+++++++.|+|+++|||||| |+..+++|++||+|++++|+||.++||+||+||+|+++++++++..|....++++.
T Consensus 2 lP~~~~~~~~~e~Rl~~R~LdLr-~~~~~~ilr~Rs~i~~~iR~ff~~~gFlEV~TPiL~~~~~~g~~~~~~~~~~~~~~ 80 (346)
T d1c0aa3 2 LPLDSNHVNTEEARLKYRYLDLR-RPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGK 80 (346)
T ss_dssp CSSCTTSCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEECSSSTTC
T ss_pred CCCCCCCCCCHHHHhhchHHhhC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCccccccccccccCCCc
Confidence 67777888899999999999995 99999999999999999999999999999999999877766666777777778899
Q ss_pred ceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcccccCCCcc
Q psy11418 260 DLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDRNRPC 336 (553)
Q Consensus 260 ~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~~~~iq 336 (553)
.+||++|||||+|+|+++|++|||+||||||||+++++|+|||||||||++|+|++++|+++|+|++++++.+..++
T Consensus 81 ~~~L~~Spel~lk~ll~~g~~~Vf~i~~~FR~E~~~~~H~~EFtmLE~e~a~~~~~~~m~~~E~li~~l~~~~~~~~ 157 (346)
T d1c0aa3 81 FYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVD 157 (346)
T ss_dssp EEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred cccCCcCHHHHHHHHhhcCCCceEEEeeeccccccCchhhhHhhhhccccccccHhHhHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987655433
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=100.00 E-value=8.1e-40 Score=339.26 Aligned_cols=143 Identities=59% Similarity=1.099 Sum_probs=137.1
Q ss_pred CcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHH
Q psy11418 189 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPE 268 (553)
Q Consensus 189 ~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spq 268 (553)
|+|+|+++|||||++|+.++++|++||+|++++|+||.++||+||+||+|++++||+++++|.++.++++.++||++|||
T Consensus 1 d~~~Rl~~R~lDl~r~~~~~~~~r~Rs~i~~~iR~ff~~~gFiEV~TPil~~~~~~~~~~~f~~~~~~~~~~~yL~~Spq 80 (342)
T d1e1oa2 1 DQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPE 80 (342)
T ss_dssp CTTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETTTTEEEEECSCSH
T ss_pred ChHhhhhcchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCccccCCCCCCcceeecccCCCcccccchhhH
Confidence 57999999999998899999999999999999999999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHHccCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhccccc
Q psy11418 269 LYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKED 331 (553)
Q Consensus 269 l~lk~l~~~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~ 331 (553)
+|+|+++++|++|||+||||||+|+.+++|+|||||||||++|+|++|+|+++|++++++++.
T Consensus 81 l~~k~~l~~g~~~vf~i~p~FR~E~~~~rHl~EFtmlE~e~a~~~~~d~m~~~e~l~~~i~~~ 143 (342)
T d1e1oa2 81 LYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQE 143 (342)
T ss_dssp HHHHHHHHHTCCEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccceeeeccccccccccccchHHHHHHHHHHHhhhhhhHHHhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998644
|
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.7e-39 Score=333.23 Aligned_cols=142 Identities=26% Similarity=0.427 Sum_probs=133.7
Q ss_pred CCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeC
Q psy11418 187 VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIA 266 (553)
Q Consensus 187 l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~S 266 (553)
++|.|+|+++|||||| ++.++++|++||+|++++|+||.++||+||+||+|+++++++++++|.+. +++.++||++|
T Consensus 21 ~~~~e~r~~~R~lDlr-~~~~~~ilr~Rs~i~~~iR~ff~~~gflEV~TPiL~~~~~eg~~~~f~~~--~~~~~~yL~~S 97 (353)
T d1eova2 21 VVNLDTRLDYRVIDLR-TVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVT--YFKGKAYLAQS 97 (353)
T ss_dssp CCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEEE--ETTEEEEECSC
T ss_pred CCCHHHHhhhhHHhhC-CHhHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCcchhccccce--eeCCcceeccc
Confidence 5789999999999996 89999999999999999999999999999999999988888889999874 58899999999
Q ss_pred HHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCC-HHHHHHHHHHHHhccccc
Q psy11418 267 PELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYAD-YNDLMHLTEDLISGRKED 331 (553)
Q Consensus 267 pql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~-~~~~m~~~e~li~~~~~~ 331 (553)
||+|+|+|+++|++|||+||||||||++++ +|||||||||||++|.| ++++|+++|+++.++++.
T Consensus 98 pel~lk~ll~~g~~~vf~I~~~FR~E~~~~~rH~pEFtmLE~y~a~~d~~~~i~~~~e~l~~~~~~~ 164 (353)
T d1eova2 98 PQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSE 164 (353)
T ss_dssp THHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhcccccceeechhhhccccccccccchhcccccccccchhhHHHHHHHHHHHhhhccc
Confidence 999999999999999999999999999998 79999999999999997 899999999999988543
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=100.00 E-value=4.3e-38 Score=327.78 Aligned_cols=153 Identities=27% Similarity=0.527 Sum_probs=141.8
Q ss_pred CCCCCCCCCCCc----chhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeecc
Q psy11418 179 MLPHMHFGVKDK----ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHH 254 (553)
Q Consensus 179 ~lP~~~~~l~~~----e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~ 254 (553)
|+|.+|+|..+. ++||++|||||| ++.++++|++||+|++++|+||.++||+||+||+|+++.+++.+..|.+..
T Consensus 5 p~~~~~~~~~~~~~~~~~Rl~~R~LdLR-~~~~~~ilr~Rs~i~~~iR~ff~~~gfiEV~TP~L~~~~~eg~~~~~~~~~ 83 (356)
T d1l0wa3 5 PVDAGWRGEEEKEASEELRLKYRYLDLR-RRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLVPYR 83 (356)
T ss_dssp CCSSGGGTCCCCCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEECT
T ss_pred ccCcccccccccccCHHHHhhchhhhhC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCcccccchhhhh
Confidence 455677877665 579999999995 999999999999999999999999999999999998877777678888888
Q ss_pred CCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcccccC
Q psy11418 255 NDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDR 332 (553)
Q Consensus 255 ~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~~ 332 (553)
++++..+||++|||||+|+|+++|++|||+||||||||+++++|+|||||||||++|+|++++|+++|++++++++..
T Consensus 84 ~~~~~~~yL~~Spel~lk~ll~~g~~~Vf~i~~~FRaE~~~t~H~~EFtmLE~e~~~~~~~~~m~~~E~li~~v~~~~ 161 (356)
T d1l0wa3 84 HEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREA 161 (356)
T ss_dssp TSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCcChhHHHHHhhhcccCcEEEEeccccccccCCcchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997644
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=100.00 E-value=1.3e-34 Score=299.08 Aligned_cols=149 Identities=28% Similarity=0.479 Sum_probs=134.5
Q ss_pred CCCCCCCCC--CCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCC
Q psy11418 179 MLPHMHFGV--KDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHND 256 (553)
Q Consensus 179 ~lP~~~~~l--~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~ 256 (553)
|||.+.++. .+.++|+++|||||| |+.++++|++||+|+++||+||.++||+||+||+|+.+++++.+.+|.+. +
T Consensus 1 plp~~~~~~~~~~~~~r~~~R~ldlr-~~~~~~~l~~Rs~i~~~iR~ff~~~gflEV~TPil~~~~~~~~~~~f~~~--~ 77 (335)
T d1b8aa2 1 PLPLDPTGKVKAELDTRLNNRFMDLR-RPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMK--Y 77 (335)
T ss_dssp SCSSCTTSSSCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCCSSSSSCCEEE--E
T ss_pred CCCCCcCCCCCCCHHHHhhchhheeC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCccCCchhhhhcccc--c
Confidence 577766654 467789999999995 99999999999999999999999999999999999877777777889874 5
Q ss_pred CCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEecc-CCHHHHHHHHHHHHhcccc
Q psy11418 257 LNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAY-ADYNDLMHLTEDLISGRKE 330 (553)
Q Consensus 257 ~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~-~~~~~~m~~~e~li~~~~~ 330 (553)
+++++||++|||+|+|+++++|++|||+||||||||++++ +|++||||+|+|+++ .+++++|+++++++..+.+
T Consensus 78 ~~~~~yL~~SpE~~lkrll~~g~~~if~i~~~FR~e~~~~~rh~~Ef~~le~~~~~~~~~~~l~~~~e~~~~~~~~ 153 (335)
T d1b8aa2 78 FEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAIN 153 (335)
T ss_dssp TTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCSSCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHH
T ss_pred cccccccccChHHHHHHHHhhhhhhHHHhhcccccccccccccchHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999987 799999999888887 5899999999999988854
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=9.8e-34 Score=286.97 Aligned_cols=130 Identities=18% Similarity=0.315 Sum_probs=116.2
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCC-------CcceeeccCCCCcceeeeeCHHHHH
Q psy11418 199 LDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGAT-------AKPFVTHHNDLNMDLYMRIAPELYL 271 (553)
Q Consensus 199 ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~-------a~~F~t~~~~~~~~~~L~~Spql~l 271 (553)
|||| |++++++|++||.|++++|+||.++||+||+||+|+++.+++. +.+|.+ +++|+++||++|||+||
T Consensus 3 l~l~-~~~~~~il~~Rs~i~~~iR~ff~~~gf~EV~tPil~~~~~~~~~~~~~~~~~~~~~--~~~~~~~yL~~SPel~l 79 (293)
T d1nnha_ 3 VEII-SREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEV--EIYGVKMRLTHSMILHK 79 (293)
T ss_dssp HHHH-TSCCHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCCCCCCEE--EETTEEEEECSCSHHHH
T ss_pred cccc-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCcccccCCCCCCccccCccccccc--cCCCceeecccChhhhH
Confidence 7886 8999999999999999999999999999999999986543332 445543 57899999999999999
Q ss_pred HHHHHccCCcEEEEccccccCCCCC---CccCCcceeeeEeccCCHHHHHHHHHHHHhccccc
Q psy11418 272 KMLVVGGLDRVYEVGRQFRNEGIDL---THNPEFTTCEFYMAYADYNDLMHLTEDLISGRKED 331 (553)
Q Consensus 272 k~l~~~g~~rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~ 331 (553)
|+++++|++|||+||||||||+.++ ||||||||||||++|+|++|+|+++|++++++++.
T Consensus 80 k~lla~g~~~Vf~I~~~FR~E~~~s~t~RH~~EFtmLE~e~~~~d~~d~m~~~e~li~~~~~~ 142 (293)
T d1nnha_ 80 QLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRK 142 (293)
T ss_dssp HHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccceeechhhhcCcccCCCCccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997643 79999999999999999999999999999998653
|
| >d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=99.98 E-value=3.7e-32 Score=246.64 Aligned_cols=140 Identities=30% Similarity=0.446 Sum_probs=129.0
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCcccc-cCCcEEEEEEEEEeeecCCCceEEEEEEeC
Q psy11418 39 LTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQV-LENVTLSVAGRVHAIRESGTKLMFYDLRGE 117 (553)
Q Consensus 39 ~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~ 117 (553)
|.+++.+.|++|+++|++.|+ |||++|++++++++++++|+.+.+++. ..+.+|+|+|||+++|.+| |++|++|+|+
T Consensus 3 ~~~e~~~~R~~Kl~~Lr~~G~-pYP~~~~~t~~~~ei~~~~~~~~~~~~~~~~~~V~vaGRI~~~R~~G-k~~F~~i~D~ 80 (143)
T d1e1oa1 3 DFNDELRNRREKLAALRQQGV-AFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG-KASFVTLQDV 80 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-SSCCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEET
T ss_pred CccHHHHHHHHHHHHHHHhCC-CCCCCCcCCccHHHHHHHHhcccchhhhccCceEEEEEEEEEEcccC-CeeEEEEEeC
Confidence 678999999999999999998 999999999999999999988765542 2467899999999999999 9999999999
Q ss_pred CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCC
Q psy11418 118 GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLP 181 (553)
Q Consensus 118 ~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP 181 (553)
++.+|++++++.. +++.|..+.+.+++||+|+|+|.+.+|++||++|.|++|++|+||++|||
T Consensus 81 ~g~iQi~~~~~~~-~~~~~~~~~k~ld~GDiIgv~G~~~~TktGElsi~~~~~~lLsK~l~PLP 143 (143)
T d1e1oa1 81 GGRIQLYVARDSL-PEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLP 143 (143)
T ss_dssp TEEEEEEEETTTS-STTHHHHTGGGCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECCSSCCC
T ss_pred CceEEEEEccccc-hhhhHHHHHhcCCcccEEEeecccEECCCCcEEEEeeEEEEeccccCCCC
Confidence 9999999998876 56677667799999999999999999999999999999999999999998
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=99.97 E-value=2.1e-31 Score=271.34 Aligned_cols=131 Identities=31% Similarity=0.486 Sum_probs=85.0
Q ss_pred ccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHH
Q psy11418 196 QRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLV 275 (553)
Q Consensus 196 ~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~ 275 (553)
+|||||| |+.++++|++||+|++++|+||.++||+||+||+|+++.+++++++|. .+++++++||++|||+||+ ++
T Consensus 1 yR~ldlr-~~~~~~~l~~Rs~i~~~iR~ff~~~gf~Ev~TP~l~~~~~e~~~~~f~--~~~~~~~~~L~~Spel~k~-ll 76 (304)
T d1n9wa2 1 YRYVTLR-GEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFG--VDYFEKRAYLAQSPQLYKQ-IM 76 (304)
T ss_dssp CHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC------------------------------CHHHHH-HH
T ss_pred CCeEEec-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCCCCCceEC--CcccccchhccccHHHHHH-Hh
Confidence 5899996 999999999999999999999999999999999997654444455664 5789999999999999955 67
Q ss_pred HccCCcEEEEccccccCCCCC-CccCCcceeeeEeccC-CHHHHHHHHHHHHhcccc
Q psy11418 276 VGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYA-DYNDLMHLTEDLISGRKE 330 (553)
Q Consensus 276 ~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~-~~~~~m~~~e~li~~~~~ 330 (553)
++|++|||+||||||+|++.+ +|+|||||+|||++|. +++++|+++|++++++++
T Consensus 77 ~~g~~~if~i~~~FR~ee~~~~rh~~EF~~le~~~~~~~~~~~~~~l~E~l~~~~~~ 133 (304)
T d1n9wa2 77 VGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLE 133 (304)
T ss_dssp HHHHSEEEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHH
T ss_pred hcccccceeehhhcccccccccccccHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 899999999999999998765 8999999999999986 789999999999988853
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=99.87 E-value=2.8e-23 Score=214.16 Aligned_cols=129 Identities=46% Similarity=0.842 Sum_probs=109.6
Q ss_pred ChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChh
Q psy11418 403 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPE 482 (553)
Q Consensus 403 ~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spe 482 (553)
|+|+|++|||||||+++.++++|++||+++++||+||.++||+||+||+|+.+++|+...+|.++.++|+.++||++|||
T Consensus 1 d~~~Rl~~R~lDl~r~~~~~~~~r~Rs~i~~~iR~ff~~~gFiEV~TPil~~~~~~~~~~~f~~~~~~~~~~~yL~~Spq 80 (342)
T d1e1oa2 1 DQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPE 80 (342)
T ss_dssp CTTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETTTTEEEEECSCSH
T ss_pred ChHhhhhcchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCccccCCCCCCcceeecccCCCcccccchhhH
Confidence 57899999999996599999999999999999999999999999999999988877777777777789999999999999
Q ss_pred HHHHHh-ccCcceEe---------------cCCCCCC----------------------------------CCCcccCCC
Q psy11418 483 LYLKST-HGSYKVTY---------------HPDGPES----------------------------------GSPVEIDFT 512 (553)
Q Consensus 483 l~~k~l-~~~~~~~~---------------~~e~~~~----------------------------------~~~~~~~~~ 512 (553)
+|||++ +++++++| .|||+|+ ......++.
T Consensus 81 l~~k~~l~~g~~~vf~i~p~FR~E~~~~rHl~EFtmlE~e~a~~~~~d~m~~~e~l~~~i~~~~~~~~~~~~~~~~~~~~ 160 (342)
T d1e1oa2 81 LYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFG 160 (342)
T ss_dssp HHHHHHHHHTCCEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSEEEETTEEEETT
T ss_pred HHHHHHhhhcccceeeeccccccccccccchHHHHHHHHHHHhhhhhhHHHhhhHHHHHHHHHHhCcchhhccchhcccC
Confidence 999964 56666644 7778764 012234667
Q ss_pred CCceeeeHHHHHHHHhCCC
Q psy11418 513 PPFRRLHMFPALEAALGVK 531 (553)
Q Consensus 513 ~~f~rit~~eA~~~~~g~~ 531 (553)
.||.++++.+++.++.+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~ 179 (342)
T d1e1oa2 161 KPFEKLTMREAIKKYRPET 179 (342)
T ss_dssp SCCEEEEHHHHHHHHSTTC
T ss_pred CchhhhhHHHHHHHHhccc
Confidence 8999999999999997654
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=99.86 E-value=7.1e-23 Score=212.21 Aligned_cols=127 Identities=25% Similarity=0.430 Sum_probs=105.2
Q ss_pred ChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcceeeeeecCCCCCcceeEEeCh
Q psy11418 403 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHHNDLNMDLYMRIAP 481 (553)
Q Consensus 403 ~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~~~~~~t~~~~~~~~~yL~~Sp 481 (553)
++++|+++|||||| ++.++++|++||.++++||+||.++||+||+||+|+.++ +|+.. .+.+..++++.++||++||
T Consensus 19 ~~~~Rl~~R~LdLR-~~~~~~ilr~Rs~i~~~iR~ff~~~gfiEV~TP~L~~~~~eg~~~-~~~~~~~~~~~~~yL~~Sp 96 (356)
T d1l0wa3 19 SEELRLKYRYLDLR-RRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARD-FLVPYRHEPGLFYALPQSP 96 (356)
T ss_dssp CHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCC-CEEECTTSTTEEEECCSCS
T ss_pred CHHHHhhchhhhhC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCccccc-chhhhhcccccccCCCcCh
Confidence 56789999999998 999999999999999999999999999999999999888 55543 4455566899999999999
Q ss_pred hHHHHHh-ccCcceEe---------------cCCCCCCC------------------------CCcccCCCCCceeeeHH
Q psy11418 482 ELYLKST-HGSYKVTY---------------HPDGPESG------------------------SPVEIDFTPPFRRLHMF 521 (553)
Q Consensus 482 el~~k~l-~~~~~~~~---------------~~e~~~~~------------------------~~~~~~~~~~f~rit~~ 521 (553)
|||||++ +++++++| +|||+|+. ......+..||+|++|.
T Consensus 97 el~lk~ll~~g~~~Vf~i~~~FRaE~~~t~H~~EFtmLE~e~~~~~~~~~m~~~E~li~~v~~~~~~~~~~~~f~r~~~~ 176 (356)
T d1l0wa3 97 QLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVELPLPFPRLSYE 176 (356)
T ss_dssp HHHHHHHHHTTCSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHTCCCCCSSCCEEEHH
T ss_pred hHHHHHhhhcccCcEEEEeccccccccCCcchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHH
Confidence 9999986 56676655 77888741 01123456789999999
Q ss_pred HHHHHHhCCC
Q psy11418 522 PALEAALGVK 531 (553)
Q Consensus 522 eA~~~~~g~~ 531 (553)
+|+.+|....
T Consensus 177 ~a~~~~~~~~ 186 (356)
T d1l0wa3 177 EAMERYGSDK 186 (356)
T ss_dssp HHHHHHSSSS
T ss_pred hhHHHHhcCc
Confidence 9999987554
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=99.86 E-value=5.4e-22 Score=203.77 Aligned_cols=144 Identities=25% Similarity=0.373 Sum_probs=111.5
Q ss_pred CCCccccCCC--ChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcceeeeeecC
Q psy11418 393 MLPHMHFGVK--DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKPFVTHH 468 (553)
Q Consensus 393 ~~P~~~~~~~--~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~~~~~t~~ 468 (553)
|+|+++.+.. +.++|+++|||||| ++.++++|++||+++++||+||.++||+||+||+|+.++ |++..+++.
T Consensus 1 plp~~~~~~~~~~~~~r~~~R~ldlr-~~~~~~~l~~Rs~i~~~iR~ff~~~gflEV~TPil~~~~~~~~~~~f~~~--- 76 (335)
T d1b8aa2 1 PLPLDPTGKVKAELDTRLNNRFMDLR-RPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMK--- 76 (335)
T ss_dssp SCSSCTTSSSCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCCSSSSSCCEEE---
T ss_pred CCCCCcCCCCCCCHHHHhhchhheeC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCccCCchhhhhcccc---
Confidence 4676666544 67889999999998 999999999999999999999999999999999999888 444466655
Q ss_pred CCCCcceeEEeChhHHHHHh-ccCcceEe----------------cCCCCCC----------------------------
Q psy11418 469 NDLNMDLYMRIAPELYLKST-HGSYKVTY----------------HPDGPES---------------------------- 503 (553)
Q Consensus 469 ~~~~~~~yL~~Spel~~k~l-~~~~~~~~----------------~~e~~~~---------------------------- 503 (553)
+++.++||++|||+|||++ +++++++| ++||+|+
T Consensus 77 -~~~~~~yL~~SpE~~lkrll~~g~~~if~i~~~FR~e~~~~~rh~~Ef~~le~~~~~~~~~~~l~~~~e~~~~~~~~~~ 155 (335)
T d1b8aa2 77 -YFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYV 155 (335)
T ss_dssp -ETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCSSCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHH
T ss_pred -ccccccccccChHHHHHHHHhhhhhhHHHhhcccccccccccccchHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 6789999999999999986 56676655 3455542
Q ss_pred ----------CCCcccCCCCCceeeeHHHHHHHHh--CCCCCCCCCCChH
Q psy11418 504 ----------GSPVEIDFTPPFRRLHMFPALEAAL--GVKLPNPTEFDTP 541 (553)
Q Consensus 504 ----------~~~~~~~~~~~f~rit~~eA~~~~~--g~~~~~~~~~~~~ 541 (553)
......+...||+|++|.+|++.+. |.++....+.+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~e~~~~l~~~~~~~~~~~~~~~~ 205 (335)
T d1b8aa2 156 REHNAKELDILNFELEEPKLPFPRVSYDKALEILGDLGKEIPWGEDIDTE 205 (335)
T ss_dssp HHHCHHHHHHTTCCCCCCCSSCCEEEHHHHHHHHHHTTCCCCTTSCCCHH
T ss_pred hhcccchhhhhccccccCCCCcccccHHHHHHHHHhhccccCcccccccc
Confidence 0001113356899999999998665 6667766565544
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.8e-22 Score=208.33 Aligned_cols=134 Identities=25% Similarity=0.374 Sum_probs=108.6
Q ss_pred CCccccCCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcceeeeeecCCCCC
Q psy11418 394 LPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHHNDLN 472 (553)
Q Consensus 394 ~P~~~~~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~~~~~~t~~~~~~ 472 (553)
+|+++++.+++|+|+++|||||| ++.++++|++||.++++||+||.++||+||+||+|+.++ +|+..+.+ ....+++
T Consensus 2 lP~~~~~~~~~e~Rl~~R~LdLr-~~~~~~ilr~Rs~i~~~iR~ff~~~gFlEV~TPiL~~~~~~g~~~~~~-~~~~~~~ 79 (346)
T d1c0aa3 2 LPLDSNHVNTEEARLKYRYLDLR-RPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLV-PSRVHKG 79 (346)
T ss_dssp CSSCTTSCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEE-ECSSSTT
T ss_pred CCCCCCCCCCHHHHhhchHHhhC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCcccccccc-ccccCCC
Confidence 68888888889999999999998 999999999999999999999999999999999999888 55553322 2334678
Q ss_pred cceeEEeChhHHHHHh-ccCcceEe---------------cCCCCCCCC------------------------CcccCCC
Q psy11418 473 MDLYMRIAPELYLKST-HGSYKVTY---------------HPDGPESGS------------------------PVEIDFT 512 (553)
Q Consensus 473 ~~~yL~~Spel~~k~l-~~~~~~~~---------------~~e~~~~~~------------------------~~~~~~~ 512 (553)
..+||++|||||||++ +++++++| +|||+|+.. ...+++
T Consensus 80 ~~~~L~~Spel~lk~ll~~g~~~Vf~i~~~FR~E~~~~~H~~EFtmLE~e~a~~~~~~~m~~~E~li~~l~~~~~~~~~- 158 (346)
T d1c0aa3 80 KFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDL- 158 (346)
T ss_dssp CEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSCCC-
T ss_pred ccccCCcCHHHHHHHHhhcCCCceEEEeeeccccccCchhhhHhhhhccccccccHhHhHHHHHHHHHHHHHHHhCCcC-
Confidence 9999999999999986 56677655 788887410 011222
Q ss_pred CCceeeeHHHHHHHHhCC
Q psy11418 513 PPFRRLHMFPALEAALGV 530 (553)
Q Consensus 513 ~~f~rit~~eA~~~~~g~ 530 (553)
.+|++++|.+++.++...
T Consensus 159 ~~~~~~~~~e~~~~~~~~ 176 (346)
T d1c0aa3 159 GDFPVMTFAEAERRYGSD 176 (346)
T ss_dssp CSCCEEEHHHHHHHHSCS
T ss_pred CccceeeHHHHHHHhccc
Confidence 479999999999988643
|
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=1.8e-21 Score=201.27 Aligned_cols=92 Identities=21% Similarity=0.322 Sum_probs=79.9
Q ss_pred CChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeCh
Q psy11418 402 KDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAP 481 (553)
Q Consensus 402 ~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Sp 481 (553)
.+.|+|+++|||||| ++.++++|++||+++++||+||.++||+||+||+|+++++++...+|.+. +++.++||++||
T Consensus 22 ~~~e~r~~~R~lDlr-~~~~~~ilr~Rs~i~~~iR~ff~~~gflEV~TPiL~~~~~eg~~~~f~~~--~~~~~~yL~~Sp 98 (353)
T d1eova2 22 VNLDTRLDYRVIDLR-TVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVT--YFKGKAYLAQSP 98 (353)
T ss_dssp CCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEEE--ETTEEEEECSCT
T ss_pred CCHHHHhhhhHHhhC-CHhHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCcchhccccce--eeCCcceeccch
Confidence 678999999999999 99999999999999999999999999999999999998844343444443 689999999999
Q ss_pred hHHHHHh-ccCcceEe
Q psy11418 482 ELYLKST-HGSYKVTY 496 (553)
Q Consensus 482 el~~k~l-~~~~~~~~ 496 (553)
|||||++ +++++++|
T Consensus 99 el~lk~ll~~g~~~vf 114 (353)
T d1eova2 99 QFNKQQLIVADFERVY 114 (353)
T ss_dssp HHHHHHHHHTTCCEEE
T ss_pred hhhhhhhhhcccccce
Confidence 9999997 56676654
|
| >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=99.75 E-value=2.7e-18 Score=146.38 Aligned_cols=98 Identities=24% Similarity=0.349 Sum_probs=82.9
Q ss_pred ccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCc
Q psy11418 68 VTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGD 147 (553)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd 147 (553)
+||++.++.+ ...|++|+|+|||+++|.+| +++|++|||+++.+|||++++.. +++.| +.++.|+.||
T Consensus 3 RTh~~~el~~---------~~~G~~V~v~Gwv~~~R~~g-~i~Fi~LrD~sg~iQ~v~~~~~~-~~~~~-~~~~~l~~es 70 (103)
T d1b8aa1 3 RTHYSSEITE---------ELNGQKVKVAGWVWEVKDLG-GIKFLWIRDRDGIVQITAPKKKV-DPELF-KLIPKLRSED 70 (103)
T ss_dssp CSCCGGGCCG---------GGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEETTTS-CHHHH-HHGGGCCTTC
T ss_pred cccChhhCCh---------hHCCCEEEEEEEEehhccCC-CcEEEEEEcCCEeeeEEEecccc-chhhh-hHHhhCCcce
Confidence 4666665532 23678999999999999999 89999999999999999998765 44444 6788999999
Q ss_pred EEEEEeeccccc--CCceeEeeeeEEEeccCC
Q psy11418 148 IIGVTGSPGKTK--KGELSIIPKKLTLLSPCL 177 (553)
Q Consensus 148 ~V~v~G~~~~t~--~ge~~l~~~~i~il~~~~ 177 (553)
+|.|+|.+.+++ ++++||.+++++||++|.
T Consensus 71 ~v~V~G~v~~~~~~~~~iEi~v~~i~ils~a~ 102 (103)
T d1b8aa1 71 VVAVEGVVNFTPKAKLGFEILPEKIVVLNRAE 102 (103)
T ss_dssp EEEEEEEEEECTTSTTSEEEEEEEEEEEECBC
T ss_pred EEEEEEEEEECCCCCccEEEEeeEEEEEEecC
Confidence 999999998876 667899999999999984
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=99.73 E-value=1.7e-18 Score=175.12 Aligned_cols=83 Identities=29% Similarity=0.482 Sum_probs=51.4
Q ss_pred ccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcceeeeeecCCCCCcceeEEeChhHHHHHh
Q psy11418 410 QRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHHNDLNMDLYMRIAPELYLKST 488 (553)
Q Consensus 410 ~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~~~~~~t~~~~~~~~~yL~~Spel~~k~l 488 (553)
||||||| ++.++++|++||+++++||+||.++||+||+||+|++++ +|+. ++|. .++++.++||++|||+|++.+
T Consensus 1 yR~ldlr-~~~~~~~l~~Rs~i~~~iR~ff~~~gf~Ev~TP~l~~~~~e~~~-~~f~--~~~~~~~~~L~~Spel~k~ll 76 (304)
T d1n9wa2 1 YRYVTLR-GEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGS-GLFG--VDYFEKRAYLAQSPQLYKQIM 76 (304)
T ss_dssp CHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC-------------------------------CHHHHHHH
T ss_pred CCeEEec-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCCCCC-ceEC--CcccccchhccccHHHHHHHh
Confidence 6999999 999999999999999999999999999999999999887 4433 3333 348999999999999998887
Q ss_pred ccCcceEe
Q psy11418 489 HGSYKVTY 496 (553)
Q Consensus 489 ~~~~~~~~ 496 (553)
+++++++|
T Consensus 77 ~~g~~~if 84 (304)
T d1n9wa2 77 VGVFERVY 84 (304)
T ss_dssp HHHHSEEE
T ss_pred hcccccce
Confidence 76665544
|
| >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=99.72 E-value=1.8e-17 Score=138.59 Aligned_cols=81 Identities=23% Similarity=0.301 Sum_probs=74.2
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc--CCceeE
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSI 165 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~--~ge~~l 165 (553)
..|++|+|+|||+++|.+| |++|++|||+++.+|+++++.. .+..||+|.|+|.+.+++ +|++||
T Consensus 11 ~~g~~V~v~GwV~~~R~~g-k~~Fi~LrD~sg~iQ~v~~~~~------------~~~~e~~v~v~G~v~~~~~~~~~~Ei 77 (93)
T d1n9wa1 11 HVGQEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQVVTGGLK------------LPLPESALRVRGLVVENAKAPGGLEV 77 (93)
T ss_dssp CTTSEEEEEEEEEEEEECS-SEEEEEEEETTEEEEEEEESCC------------CCCTTCEEEEEEEEEECTTSTTSEEE
T ss_pred cCCCEEEEEEEEEeEEeCC-CcEEEEEEcCCccceEEecccc------------ccccceEEEEEEEEEECCCCCCCEEE
Confidence 3678999999999999999 9999999999999999998753 367899999999998876 699999
Q ss_pred eeeeEEEeccCCCCCC
Q psy11418 166 IPKKLTLLSPCLHMLP 181 (553)
Q Consensus 166 ~~~~i~il~~~~~~lP 181 (553)
.++++++|++|..|||
T Consensus 78 ~v~~i~il~~a~~plP 93 (93)
T d1n9wa1 78 QAKEVEVLSPALEPTP 93 (93)
T ss_dssp EEEEEEEEECCCSCCC
T ss_pred EEeEEEEEecCCCCCC
Confidence 9999999999999988
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.72 E-value=1.3e-18 Score=175.11 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=89.0
Q ss_pred ceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcc-------eeeeeecCCCCCcceeEEeChhHH
Q psy11418 412 YLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGAT-------AKPFVTHHNDLNMDLYMRIAPELY 484 (553)
Q Consensus 412 ~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~-------~~~~~t~~~~~~~~~yL~~Spel~ 484 (553)
-|||| +++++++|++||.++++||+||.++||+||+||+|++.++++. +.++.+ ++||.++||++|||||
T Consensus 2 ~l~l~-~~~~~~il~~Rs~i~~~iR~ff~~~gf~EV~tPil~~~~~~~~~~~~~~~~~~~~~--~~~~~~~yL~~SPel~ 78 (293)
T d1nnha_ 2 AVEII-SREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEV--EIYGVKMRLTHSMILH 78 (293)
T ss_dssp HHHHH-TSCCHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCCCCCCEE--EETTEEEEECSCSHHH
T ss_pred ccccc-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCcccccCCCCCCccccCccccccc--cCCCceeecccChhhh
Confidence 36888 9999999999999999999999999999999999997653322 334433 3889999999999999
Q ss_pred HHH-hccCcceE------------------ecCCCCCCC-----------------------------CCcccCCCCCce
Q psy11418 485 LKS-THGSYKVT------------------YHPDGPESG-----------------------------SPVEIDFTPPFR 516 (553)
Q Consensus 485 ~k~-l~~~~~~~------------------~~~e~~~~~-----------------------------~~~~~~~~~~f~ 516 (553)
||+ |+++++++ |+|||+|+. ....++...+|+
T Consensus 79 lk~lla~g~~~Vf~I~~~FR~E~~~s~t~RH~~EFtmLE~e~~~~d~~d~m~~~e~li~~~~~~~~~~~~~~~~~~~~~~ 158 (293)
T d1nnha_ 79 KQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRFE 158 (293)
T ss_dssp HHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCSSCE
T ss_pred HHHHHHhccccceeechhhhcCcccCCCCccchhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCcccccCCccc
Confidence 997 46666554 467888741 012244457899
Q ss_pred eeeHHHHHHHH
Q psy11418 517 RLHMFPALEAA 527 (553)
Q Consensus 517 rit~~eA~~~~ 527 (553)
+++|.||++.+
T Consensus 159 ~~~~~eal~~~ 169 (293)
T d1nnha_ 159 VFEYSEVLEEF 169 (293)
T ss_dssp EEEHHHHHHHT
T ss_pred cccHHhhhccc
Confidence 99999999876
|
| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=5.7e-17 Score=144.65 Aligned_cols=93 Identities=23% Similarity=0.214 Sum_probs=80.0
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCC-CHHHHHHHhccCCCCcEEEEEeeccccc-------
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQ-SEEEFASDLVKIKRGDIIGVTGSPGKTK------- 159 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~-~~~~~~~~~~~l~~gd~V~v~G~~~~t~------- 159 (553)
..|++|+|+|||+++|.+|+|++|++|||+++.+|+++..+... ....+..+++.|+.||+|.|+|.+.+++
T Consensus 34 ~~g~~V~v~GwV~~~R~~G~kl~F~~LrD~sg~iQ~~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~ 113 (134)
T d1eova1 34 DSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSAT 113 (134)
T ss_dssp TTTCEEEEEEEEEEEEECSSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCCTTSS
T ss_pred cCCCEEEEEEEEEEEEeCCCcEEEEEEEcCCCcEEEEEEeccccchhHHHHHHHhcCCCCCEEEEEEEEEeCCccCCCCC
Confidence 46889999999999999997799999999999999999986532 1234456788999999999999998764
Q ss_pred CCceeEeeeeEEEeccCCCCC
Q psy11418 160 KGELSIIPKKLTLLSPCLHML 180 (553)
Q Consensus 160 ~ge~~l~~~~i~il~~~~~~l 180 (553)
+|++||+++++++|++|..||
T Consensus 114 ~~~~Ei~v~~i~vls~a~~~L 134 (134)
T d1eova1 114 VQNLEIHITKIYTISETPEAL 134 (134)
T ss_dssp EEEEEEEEEEEEEEECCCSSC
T ss_pred CCcEEEEEEEEEEEeCCCCCC
Confidence 578999999999999998765
|
| >d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=99.68 E-value=7.5e-17 Score=137.36 Aligned_cols=83 Identities=18% Similarity=0.287 Sum_probs=73.4
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc-------ccC
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK-------TKK 160 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~-------t~~ 160 (553)
..|++|+|+|||+++|.+| +++|++|||++|.+|++++.+. +.| +.++.|+.||+|.|+|++.+ .++
T Consensus 14 ~~g~~V~l~GWV~~~R~~g-~i~Fi~LRD~~G~iQ~v~~~~~----~~~-~~~~~l~~Es~I~V~G~V~~r~~~n~~~~t 87 (104)
T d1l0wa1 14 HVGEEVVLEGWVNRRRDLG-GLIFLDLRDREGLVQLVAHPAS----PAY-ATAERVRPEWVVRAKGLVRLRPEPNPRLAT 87 (104)
T ss_dssp GTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECTTS----TTH-HHHTTCCTTCEEEEEEEEEECSSCCTTSTT
T ss_pred HCCCEEEEEEEEEehhcCC-CeEEEEEECCCCceEEecccch----hHH-HHHhhcCcccEEEEEEEEeeCCccCCCCCC
Confidence 3788999999999999999 9999999999999999998753 345 46788999999999999863 357
Q ss_pred CceeEeeeeEEEeccC
Q psy11418 161 GELSIIPKKLTLLSPC 176 (553)
Q Consensus 161 ge~~l~~~~i~il~~~ 176 (553)
|++||.+++++||++|
T Consensus 88 G~iEi~v~~i~iL~~a 103 (104)
T d1l0wa1 88 GRVEVELSALEVLAEA 103 (104)
T ss_dssp TTEEEEEEEEEEEECC
T ss_pred CCEEEEEeEEEEEEcC
Confidence 8999999999999987
|
| >d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=1.2e-16 Score=136.69 Aligned_cols=85 Identities=21% Similarity=0.322 Sum_probs=73.9
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc---------
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT--------- 158 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t--------- 158 (553)
..|++|+|+|||+++|.+| +++|++|||++|.+|+++.++. .+ +.+.++.|+.||+|.|+|+|.+.
T Consensus 13 ~~g~~V~v~GWv~~~R~~g-~i~Fi~LRD~~G~~Q~v~~~~~---~~-~~~~~~~l~~Es~v~V~G~V~~r~~~~~n~~~ 87 (106)
T d1c0aa1 13 HVGQQVTLCGWVNRRRDLG-SLIFIDMRDREGIVQVFFDPDR---AD-ALKLASELRNEFCIQVTGTVRARDEKNINRDM 87 (106)
T ss_dssp GTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECGGG---HH-HHHHHTTCCTTCEEEEEEEEEECCTTTCCTTS
T ss_pred HCCCEEEEEEEEEEeeeCC-CcEEEEEEcCCeEEeEEecccc---hh-HHHHHHhhCccceEEEEeEEeccCccccCCCC
Confidence 3688999999999999999 9999999999999999998763 23 34567889999999999998642
Q ss_pred cCCceeEeeeeEEEeccCC
Q psy11418 159 KKGELSIIPKKLTLLSPCL 177 (553)
Q Consensus 159 ~~ge~~l~~~~i~il~~~~ 177 (553)
++|++||.+++++||++|.
T Consensus 88 ~tg~iEi~v~~i~vl~~ad 106 (106)
T d1c0aa1 88 ATGEIEVLASSLTIINRAD 106 (106)
T ss_dssp TTTTEEEEEEEEEEEECCC
T ss_pred CCCcEEEEEeEEEEEeCCC
Confidence 4689999999999999873
|
| >d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=98.52 E-value=3.8e-08 Score=87.46 Aligned_cols=70 Identities=31% Similarity=0.386 Sum_probs=61.0
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLP 395 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P 395 (553)
|..+.+..+++|+.++.... ..+.+..+.+.++.||+|.|+|.+.+|++|+++|.|++|++|+||..|+|
T Consensus 74 F~~i~D~~g~iQi~~~~~~~-~~~~~~~~~k~ld~GDiIgv~G~~~~TktGElsi~~~~~~lLsK~l~PLP 143 (143)
T d1e1oa1 74 FVTLQDVGGRIQLYVARDSL-PEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLP 143 (143)
T ss_dssp EEEEEETTEEEEEEEETTTS-STTHHHHTGGGCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECCSSCCC
T ss_pred EEEEEeCCceEEEEEccccc-hhhhHHHHHhcCCcccEEEeecccEECCCCcEEEEeeEEEEeccccCCCC
Confidence 45677888999999986433 34566677899999999999999999999999999999999999999888
|
| >d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Lactococcus lactis [TaxId: 1358]
Probab=98.50 E-value=2.7e-07 Score=91.86 Aligned_cols=129 Identities=17% Similarity=0.131 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceeccc--------cCCCC-C-cceeeccCCCCcceeeeeCHHHHHHHHHHc---
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMI--------AGGAT-A-KPFVTHHNDLNMDLYMRIAPELYLKMLVVG--- 277 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~--------~gga~-a-~~F~t~~~~~~~~~~L~~Spql~lk~l~~~--- 277 (553)
.+.+..+...+++.|..+||.||.||++... .|+.. . ..|. ..+.-|..+.||.-.....-++++.
T Consensus 15 ~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~-~~d~~g~~l~LRpD~T~~iaR~~~~~~~ 93 (318)
T d1z7ma1 15 VKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQ-FIKHEGQSITLRYDFTLPLVRLYSQIKD 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCE-EECTTCCEEEECCCSHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccchHHHhhccCCCcccccccceeE-eecCCccEEEeeccccchHHHHHHHhcc
Confidence 4567778999999999999999999999421 12221 1 2333 2344678899996544444454442
Q ss_pred -cCCcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCcccccccc
Q psy11418 278 -GLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANAR 342 (553)
Q Consensus 278 -g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r 342 (553)
...|+|++|+|||.|.....|..||+|+.+|.-+.+ ..|++.++-++++.+ ++....+..+.+
T Consensus 94 ~~~~r~~Y~g~vfR~~~~~~~r~rE~~Q~g~EiiG~~~~~ad~Eii~l~~e~l~~l--gi~~~~i~i~~~ 161 (318)
T d1z7ma1 94 STSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQL--GLNKTVFEIGSA 161 (318)
T ss_dssp CCCEEEEEEEECCCCCC-------CCEEEEEEEESSCHHHHHHHHHHHHHHHHHHH--TCSSEEEEEEEH
T ss_pred cCCcccccccceeEEccccccccchhhhhheeccccchhhHHHHHHHHHHHHHHHh--hhccccccchhh
Confidence 234899999999999988888899999999998775 456788888888776 566666666653
|
| >d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=98.28 E-value=6e-07 Score=89.60 Aligned_cols=130 Identities=12% Similarity=0.111 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceeccc------cCCCC----CcceeeccCCCCcceeeeeCHHHHHHHHHHcc--
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMI------AGGAT----AKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG-- 278 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~------~gga~----a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g-- 278 (553)
.+.|..|.+.+++.|..+||.+|.||++... .|+.. ...|. ..+..+....||..+..-..+.++..
T Consensus 16 ~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~-~~d~~~~~~~lr~d~t~~~~r~~~~~~~ 94 (325)
T d1qe0a2 16 SKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYT-FKDKGDRSITLRPEGTAAVVRSYIEHKM 94 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEE-ECHHHHCCEEECSCSHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHcCCeEeeCcccccHHHhccccCCchhHHHHHHhh-hhccccccccccccccccHHHHHHhhcc
Confidence 3678899999999999999999999999532 12221 12222 12334567888888777777654432
Q ss_pred ---C---CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCccccccccc
Q psy11418 279 ---L---DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANARM 343 (553)
Q Consensus 279 ---~---~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~ 343 (553)
. -|+|++|+|||.+.....+..||||+.+|.-+.+ --+++.++-+.++.+ ++..+.+..|...
T Consensus 95 ~~~~~~p~R~~Y~g~VfR~~~~~~~~~rE~~Q~G~EiiG~~~~~ad~Eii~l~~~~l~~~--g~~~~~i~i~~~~ 167 (325)
T d1qe0a2 95 QGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSF--GLKHLKLVINSVG 167 (325)
T ss_dssp GGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHHT--TCCCEEEEEEECC
T ss_pred ccccccchhhheecceeeeccccCCccceeeecceeecCCcCcHHHHHHHHHHHHHHHhh--CCcCcceeecccc
Confidence 1 2899999999999998888889999999998874 357888888888777 5666666666533
|
| >d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.19 E-value=3.1e-06 Score=84.46 Aligned_cols=118 Identities=13% Similarity=0.152 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecc------ccCCC-CCcceeeccCCCCcceeeeeCHHHHHHHHHHcc--C-
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNM------IAGGA-TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG--L- 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~------~~gga-~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g--~- 279 (553)
-...+..|...+++.|.++||.+|.||++.. ..|+. ..+.|.. .+.-|..+.||.-.....-++++.. .
T Consensus 17 ~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~f-~D~~g~~l~LRpD~T~~iar~~~~~~~~~ 95 (327)
T d1wu7a2 17 DMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSF-VDKGGREVTLIPEATPSTVRMVTSRKDLQ 95 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEE-ECTTSCEEEECSCSHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEeECCccchHhhccccCchhHHHHHhhh-hcccchhhcccccccchhhhHhhhhhhcc
Confidence 3467888899999999999999999999942 22332 2344443 3456888999977666666655432 2
Q ss_pred --CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcc
Q psy11418 280 --DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGR 328 (553)
Q Consensus 280 --~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~ 328 (553)
-|+|++|+|||.+.....+..||+|+.+|.-+.+ ..+++.++-+.++.+
T Consensus 96 ~p~k~~y~g~VfR~~~~~~g~~re~~Q~G~EiiG~~~~~~D~Eii~l~~~~l~~~ 150 (327)
T d1wu7a2 96 RPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILDRL 150 (327)
T ss_dssp SSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHT
T ss_pred ccceeeccCcceeccccccCCcchhhhhhhhhcCCcchHHHHHHHHHHHHHHhcc
Confidence 2999999999999998889999999999998774 456666666666665
|
| >d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=98.18 E-value=1.5e-06 Score=85.88 Aligned_cols=100 Identities=19% Similarity=0.186 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceecccc----CC----CCCcceeeccCCCCcceeeeeCHHHHHHHHHHccC---
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GG----ATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL--- 279 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gg----a~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~--- 279 (553)
.+++.+|.+.+++.+.+.||.||.||.|.+.. .| -....|.+..+.-+.+++|+...+-.+-.+.....
T Consensus 30 ~~l~~~L~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sG~~~~~~~~~~~~~~~~~~~~~~L~pt~e~~~~~~~~~~~~sy 109 (291)
T d1nyra4 30 ATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSY 109 (291)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHHHTSCCBG
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECccccchhHhhhhccccccccceEEEeeccccccccccccchhHHHHhhhcEeccc
Confidence 47888999999999999999999999996431 11 01234443333346789999998888876655432
Q ss_pred ---C-cEEEEccccccCCCCC----CccCCcceeeeEec
Q psy11418 280 ---D-RVYEVGRQFRNEGIDL----THNPEFTTCEFYMA 310 (553)
Q Consensus 280 ---~-rVfei~~~FR~E~~~~----~H~~EFt~lE~e~a 310 (553)
. |+|++++|||+|.+.. .+..||+|.|.+.-
T Consensus 110 ~dLPlr~~~~~~~fR~E~~~~~~Gl~Rvr~F~~~d~~~f 148 (291)
T d1nyra4 110 RELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF 148 (291)
T ss_dssp GGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEE
T ss_pred cccceEEeeccceeecCCCcccccccceeeeeeeeheee
Confidence 2 9999999999999864 37889999999974
|
| >d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS species: Thermus thermophilus [TaxId: 274]
Probab=98.16 E-value=3e-06 Score=82.02 Aligned_cols=112 Identities=21% Similarity=0.195 Sum_probs=78.0
Q ss_pred HHHHHHHHHhhhCCeEEEecceeccc---------cCC----CCCcceeeccCC----------CCcceeee--eCHHHH
Q psy11418 216 QIIAYVRRYLDSLGFLEVETPMMNMI---------AGG----ATAKPFVTHHND----------LNMDLYMR--IAPELY 270 (553)
Q Consensus 216 ~i~~~ir~fl~~~gF~EV~TPil~~~---------~gg----a~a~~F~t~~~~----------~~~~~~L~--~Spql~ 270 (553)
.+++.|+++|.+.||.|++.|.+.+. |-. ...+-|....+. .....-|| .|+-.
T Consensus 21 ~~~~~i~~if~~~GF~~~~gp~ies~~~NFDaLn~P~dHPAR~~~DTfYi~~~~~~~~~~~~~~~~~~~lLRTHTS~~q- 99 (266)
T d1jjca_ 21 LMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQ- 99 (266)
T ss_dssp HHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTSGGGGGSCCCBEECSSCCEECTTSCEECSCEEECSSSTHHH-
T ss_pred HHHHHHHHHHHHcCCeEeeCCccccchhhhhcccCCcccchhcccceEEEecccccccCcccccchhhhhhccCCcHHH-
Confidence 45688899999999999999988432 100 011222211110 11234577 34422
Q ss_pred HHHHHHccCC--cEEEEccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhccc
Q psy11418 271 LKMLVVGGLD--RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGRK 329 (553)
Q Consensus 271 lk~l~~~g~~--rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~~ 329 (553)
-+.+..+.. |++.+|+|||+|..|++|.|+|.|+|.-.... ++.+++..++.+++.++
T Consensus 100 -~r~~~~~~~p~~~~~~g~VyRrd~iD~tH~p~FhQ~eg~~vd~~~~~~~Lk~~l~~~~~~~f 161 (266)
T d1jjca_ 100 -VRYMVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALF 161 (266)
T ss_dssp -HHHHHHSCSSEEEEEEEEEECCSCCCSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred -HHHHhccCCCceEEecccceecCCCCCcccccceeeeeeeccccccHHHHHHHHHHHHHHhc
Confidence 233445553 89999999999999999999999999988754 69999999999999884
|
| >d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Thermus thermophilus [TaxId: 274]
Probab=98.10 E-value=7.7e-06 Score=81.35 Aligned_cols=129 Identities=19% Similarity=0.267 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc------cCCCC----CcceeeccCCCCcceeeeeCHHHHHHHHHH-cc
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI------AGGAT----AKPFVTHHNDLNMDLYMRIAPELYLKMLVV-GG 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~------~gga~----a~~F~t~~~~~~~~~~L~~Spql~lk~l~~-~g 278 (553)
-.+.|..|.+.+++.|..+||.+|.||++-.. .|... ...|. ..+.-|..+.||.......-+.++ .+
T Consensus 15 ~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~-~~d~~g~~l~LRpD~T~~iar~~~~~~ 93 (324)
T d1h4vb2 15 ELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFT-FQDRGGRSLTLRPEGTAAMVRAYLEHG 93 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCC------CCSCE-EECTTSCEEEECCCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEeeCCccccHHHhhcccCCchhHHHHHHhh-hhccCCcccccccccccHHHHHHHHhh
Confidence 44678889999999999999999999999421 12221 22332 234567889999776666566444 33
Q ss_pred C---C---cEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCccccccc
Q psy11418 279 L---D---RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANA 341 (553)
Q Consensus 279 ~---~---rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~ 341 (553)
+ . |.|++|+|||.+.....+..||+|+++|.-+.+ ..+++.++-+.+..+ ++...++..+.
T Consensus 94 ~~~~~~p~r~~Y~g~VfR~~~~~~gr~re~~Q~g~EiiG~~~~~ad~Eii~l~~~~l~~l--~~~~~~~~i~~ 164 (324)
T d1h4vb2 94 MKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKEL--GLRRLKVKLSS 164 (324)
T ss_dssp GGGSSSSEEEEEEEEEECCCCC----CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHHT--TCCSCEEEEEE
T ss_pred hhhhchhhhheeeCcccccCcccCCCcceeccccccccCCCChHHHHHHHHHHHHHHHHh--cccCcceeeec
Confidence 2 2 999999999999988888999999999998764 567788888888777 55555554443
|
| >d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Escherichia coli [TaxId: 562]
Probab=98.01 E-value=8.9e-06 Score=80.69 Aligned_cols=118 Identities=18% Similarity=0.181 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceeccc------cCCCC---CcceeeccCCCCcceeeeeCHHHHHHHHHHccC--
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMI------AGGAT---AKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL-- 279 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~------~gga~---a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~-- 279 (553)
.+.|..|...+++.|..+||.+|+||++... .|+.. .+.+.+..+.-|..+.||.......-+.++...
T Consensus 16 ~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~~~~~~d~~g~~l~Lr~D~T~~iaR~~~~~~~~ 95 (322)
T d1kmma2 16 TAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLL 95 (322)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCTTSHHHHHTCEEEECTTSCEEEECSCSHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHCCCeEeECcccccHHHhhcccCcchhhhHHHHhhhhhcccccccccccccchhhHHHHhhhhh
Confidence 3577889999999999999999999999432 23221 233334445668889999877666666555432
Q ss_pred ----CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcc
Q psy11418 280 ----DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGR 328 (553)
Q Consensus 280 ----~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~ 328 (553)
-|.|++|+|||.|.....+.-||+|+++|.-+.+ -.+++.++-+.++.+
T Consensus 96 ~~~p~r~~y~g~v~r~~~~~~gr~re~~Q~g~EiiG~~~~~ad~Eii~l~~~~l~~l 152 (322)
T d1kmma2 96 YNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRAL 152 (322)
T ss_dssp TTCCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHhhcccccccCCCCCCccchhhhhhHHHhccccchhHHHHHHHHHHHHHhc
Confidence 2899999999999998888999999999998764 456777777777776
|
| >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=97.92 E-value=4.8e-06 Score=69.39 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=54.8
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC--CCceeEEeeeEEEEeccC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSIIPKKLTLLSPCL 391 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~--~g~~El~~~~i~vl~~~~ 391 (553)
|..+-++.+.+|++++.... .+++++.+++|+.||+|.|+|.+.+++ ++++||.+++++||++|.
T Consensus 36 Fi~LrD~sg~iQ~v~~~~~~--~~~~~~~~~~l~~es~v~V~G~v~~~~~~~~~iEi~v~~i~ils~a~ 102 (103)
T d1b8aa1 36 FLWIRDRDGIVQITAPKKKV--DPELFKLIPKLRSEDVVAVEGVVNFTPKAKLGFEILPEKIVVLNRAE 102 (103)
T ss_dssp EEEEEETTEEEEEEEETTTS--CHHHHHHGGGCCTTCEEEEEEEEEECTTSTTSEEEEEEEEEEEECBC
T ss_pred EEEEEcCCEeeeEEEecccc--chhhhhHHhhCCcceEEEEEEEEEECCCCCccEEEEeeEEEEEEecC
Confidence 45677888889988875432 367889999999999999999998877 778999999999999974
|
| >d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Escherichia coli [TaxId: 562]
Probab=97.84 E-value=5.1e-06 Score=81.89 Aligned_cols=100 Identities=22% Similarity=0.247 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceecccc----CC----CCCcceeeccCCCCcceeeeeCHHHHHHHHHHccC---
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GG----ATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL--- 279 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gg----a~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~--- 279 (553)
.+++.+|.+.+++.+.+.||.||.||.|.+.. .| -..+.|.+. .-+.+++|+...+-..-.++....
T Consensus 30 ~~l~~~L~~~i~e~~~~~G~~eV~~P~L~~~~l~~~sG~~~~~~~~~~~~~--~~~~~~~L~Pt~e~~~~~~~~~~~~sy 107 (291)
T d1qf6a4 30 WTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTS--SENREYCIKPMNCPGHVQIFNQGLKSY 107 (291)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEE--ETTEEEEECSSSHHHHHHHHTTSCEEG
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEcccccchhHHhhhchhhhccchhcccc--ccchhhcccccCcHHHHHHHHccccch
Confidence 46789999999999999999999999997431 11 012344332 346789999888877666554333
Q ss_pred ----CcEEEEccccccCCCC-C---CccCCcceeeeEeccCC
Q psy11418 280 ----DRVYEVGRQFRNEGID-L---THNPEFTTCEFYMAYAD 313 (553)
Q Consensus 280 ----~rVfei~~~FR~E~~~-~---~H~~EFt~lE~e~a~~~ 313 (553)
-|+|++++|||+|... . .+..||+|-|.+. |..
T Consensus 108 ~~LPl~~~q~~~~fR~E~~~~~~Gl~R~reF~~~d~h~-f~~ 148 (291)
T d1qf6a4 108 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCT 148 (291)
T ss_dssp GGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EEC
T ss_pred hhcCeeEeecceeeecccccccccccccccceecccee-Eec
Confidence 2999999999999654 2 3889999999999 443
|
| >d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
Probab=97.83 E-value=3e-05 Score=75.26 Aligned_cols=115 Identities=20% Similarity=0.243 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceeccc-----cCC----CCCcceeecc---CCCCcceeeeeCHHHHHHHHHHcc
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMI-----AGG----ATAKPFVTHH---NDLNMDLYMRIAPELYLKMLVVGG 278 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-----~gg----a~a~~F~t~~---~~~~~~~~L~~Spql~lk~l~~~g 278 (553)
.+++.+|.+.+|+.+.+.||.||.||+|.+. .|+ ..-..|.... +..+.+++|+...+-..-.+....
T Consensus 35 ~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~ks~~~~~~~~~~~~~~~~~~~~~~~~~~~L~P~~~~~~~~i~~~~ 114 (268)
T d1nj8a3 35 FKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLW 114 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEeehhhhhhHhhhccCCCccccccceeEEeccccccchhhhhcccCCCchhHHhhhhh
Confidence 4789999999999999999999999998531 222 1112232211 122456899988877766655543
Q ss_pred CC-------cEEEEccccccCCCCCC---ccCCccee-eeEeccCCHHHHHHHHHHHH
Q psy11418 279 LD-------RVYEVGRQFRNEGIDLT---HNPEFTTC-EFYMAYADYNDLMHLTEDLI 325 (553)
Q Consensus 279 ~~-------rVfei~~~FR~E~~~~~---H~~EFt~l-E~e~a~~~~~~~m~~~e~li 325 (553)
.- |+|++|+|||+|..... ..-||++. +.+....+-++..+..+.++
T Consensus 115 ~~Syr~LP~r~~e~~~~fR~E~~~~~GllR~reF~~~dd~~~~~~~~~~~~~~~~~~~ 172 (268)
T d1nj8a3 115 VKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAI 172 (268)
T ss_dssp CCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccchhhhheEEeeccccccccccccccceeEEEEeeechhceeccccchhhHHHHHHH
Confidence 32 99999999999966553 77899755 56776777665555544443
|
| >d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.76 E-value=4.7e-05 Score=73.25 Aligned_cols=115 Identities=15% Similarity=0.122 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceecccc-----CCC----CCcceeec---cCCCCcceeeeeCHHHHHHHHHHcc
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-----GGA----TAKPFVTH---HNDLNMDLYMRIAPELYLKMLVVGG 278 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~-----gga----~a~~F~t~---~~~~~~~~~L~~Spql~lk~l~~~g 278 (553)
.+++.+|.+.+++.+.+.||.||.||+|.... |+- .-..|... .+..+.+++|+...+-..-.++...
T Consensus 40 ~~l~~~l~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sg~~~~~~~~~m~~~~~~~~~~~~~~~~L~pt~e~~~~~~~~~~ 119 (272)
T d1hc7a2 40 YAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKW 119 (272)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEeeccccchHHhhhcccchhhcccceeeeeccccccccchhhcccccccceeehhhce
Confidence 47899999999999999999999999885321 211 11223221 1223556899988775554433332
Q ss_pred CC-------cEEEEccccccCCCCCC--ccCCcceeeeEeccCCHHHHHHHHHHHH
Q psy11418 279 LD-------RVYEVGRQFRNEGIDLT--HNPEFTTCEFYMAYADYNDLMHLTEDLI 325 (553)
Q Consensus 279 ~~-------rVfei~~~FR~E~~~~~--H~~EFt~lE~e~a~~~~~~~m~~~e~li 325 (553)
.- |+|++++|||+|.+... ..-+|+|.+.+....+..+.....++++
T Consensus 120 ~~s~~~LPlr~~~~~~~fR~E~~~~g~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (272)
T d1hc7a2 120 IRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRML 175 (272)
T ss_dssp CCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred eccccccceeeeecccccccccccccccceEEEEEEhhhhhhcccccchhHHHHHH
Confidence 21 99999999999988763 5678999999988887666665555544
|
| >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=97.72 E-value=1.2e-05 Score=65.59 Aligned_cols=58 Identities=21% Similarity=0.217 Sum_probs=47.9
Q ss_pred hcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC--CCceeEEeeeEEEEeccCCCCC
Q psy11418 326 SGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSIIPKKLTLLSPCLHMLP 395 (553)
Q Consensus 326 ~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~--~g~~El~~~~i~vl~~~~~~~P 395 (553)
-.+-++.+.+|++++. ...+..||+|.|+|.+.+++ +|++||.++++++|++|..|+|
T Consensus 34 i~LrD~sg~iQ~v~~~------------~~~~~~e~~v~v~G~v~~~~~~~~~~Ei~v~~i~il~~a~~plP 93 (93)
T d1n9wa1 34 LLLRDRSGVVQVVTGG------------LKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTP 93 (93)
T ss_dssp EEEEETTEEEEEEEES------------CCCCCTTCEEEEEEEEEECTTSTTSEEEEEEEEEEEECCCSCCC
T ss_pred EEEEcCCccceEEecc------------ccccccceEEEEEEEEEECCCCCCCEEEEEeEEEEEecCCCCCC
Confidence 3455667778877764 24578899999999998877 6999999999999999988887
|
| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.68 E-value=1.3e-05 Score=69.73 Aligned_cols=70 Identities=14% Similarity=0.035 Sum_probs=54.8
Q ss_pred HhcccccCCCccccccccc-ccChHHHHHhhcccCCccEEEEEcccccCC-------CCceeEEeeeEEEEeccCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARM-YQSEEEFASDLVKIKRGDIIGVTGSPGKTK-------KGELSIIPKKLTLLSPCLHML 394 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~-~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~-------~g~~El~~~~i~vl~~~~~~~ 394 (553)
|-.+.++.+.+|+++.... .....+++.++++|+.||+|.|+|.+.+++ +|++||.+++++||++|..++
T Consensus 57 F~~LrD~sg~iQ~~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~Ei~v~~i~vls~a~~~L 134 (134)
T d1eova1 57 FLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEAL 134 (134)
T ss_dssp EEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCSSC
T ss_pred EEEEEcCCCcEEEEEEeccccchhHHHHHHHhcCCCCCEEEEEEEEEeCCccCCCCCCCcEEEEEEEEEEEeCCCCCC
Confidence 3566677777887766432 234457788899999999999999997765 478999999999999987653
|
| >d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=97.57 E-value=3.3e-05 Score=64.45 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=50.2
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccC---------CCCceeEEeeeEEEEeccC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT---------KKGELSIIPKKLTLLSPCL 391 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~---------~~g~~El~~~~i~vl~~~~ 391 (553)
|-.|-++.+.+|+++... ..+.+..+++|+.||+|.|+|+|.+. ++|++||.+++++||++|.
T Consensus 35 Fi~LRD~~G~~Q~v~~~~----~~~~~~~~~~l~~Es~v~V~G~V~~r~~~~~n~~~~tg~iEi~v~~i~vl~~ad 106 (106)
T d1c0aa1 35 FIDMRDREGIVQVFFDPD----RADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRAD 106 (106)
T ss_dssp EEEEEETTEEEEEEECGG----GHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTTSTTTTEEEEEEEEEEEECCC
T ss_pred EEEEEcCCeEEeEEeccc----chhHHHHHHhhCccceEEEEeEEeccCccccCCCCCCCcEEEEEeEEEEEeCCC
Confidence 345667788888887652 34567788999999999999998643 3578999999999999873
|
| >d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Thermotoga maritima [TaxId: 2336]
Probab=97.50 E-value=0.00011 Score=71.40 Aligned_cols=114 Identities=11% Similarity=-0.016 Sum_probs=82.6
Q ss_pred HHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHc-cCC---cEEEEccccccCCCCC
Q psy11418 221 VRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG-GLD---RVYEVGRQFRNEGIDL 296 (553)
Q Consensus 221 ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~-g~~---rVfei~~~FR~E~~~~ 296 (553)
+++-..++||.||.||++...+.-. ..-|. +.-|+.+.||.-.....-|+++. +.+ |+|++|+|||.++.+
T Consensus 12 f~~~~~~~Gy~~i~tP~~E~~e~~~-~~~F~---D~~g~~l~LRpD~T~~iaR~~~~~~~~~p~k~~Y~g~VfR~~~~~- 86 (275)
T d1usya_ 12 FYSKATKKGFSPFFVPALEKAEEPA-GNFFL---DRKGNLFSIREDFTKTVLNHRKRYSPDSQIKVWYADFVYRYSGSD- 86 (275)
T ss_dssp HHHHHHHTTCEECCCCSEEECSSCC-SSCEE---ETTSCEEEECCCHHHHHHHHHTTCTTCCCEEEECCEEEEEEETTE-
T ss_pred HHHHHHHcCCceeecCccccccccc-cceeE---cCCCCEEEECCCCcHHHHHHHHHcCCCCCeeeeEEeeEEEeCCCc-
Confidence 3444468999999999997544322 12343 44578899998777777776554 222 999999999988643
Q ss_pred CccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCccccccccc
Q psy11418 297 THNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANARM 343 (553)
Q Consensus 297 ~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~ 343 (553)
.-||+|+.+|.-+.+ --|++.++-++++.+ +++.+++..|...
T Consensus 87 --~re~~Q~G~EiiG~~~~~aD~Evi~l~~~~l~~l--gi~~~~i~l~~~~ 133 (275)
T d1usya_ 87 --LVAEYQLGLEKVPRNSLDDSLEVLEIIVESASEF--FEGPVIVEIGHTG 133 (275)
T ss_dssp --EEEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHH--CCSCEEEEEEETT
T ss_pred --ccceeecCceeechhhHHHHHHHHHHHHHHHHhh--cccccEEEecCcc
Confidence 569999999987653 467889988888888 6667777666643
|
| >d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=97.49 E-value=2.6e-05 Score=64.87 Aligned_cols=61 Identities=8% Similarity=0.105 Sum_probs=48.6
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEccccc-------CCCCceeEEeeeEEEEecc
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK-------TKKGELSIIPKKLTLLSPC 390 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~-------~~~g~~El~~~~i~vl~~~ 390 (553)
|..+-++.+.+|+++... .+.++.+++|+.||+|.|+|+|.+ .++|++||.+++++|||+|
T Consensus 36 Fi~LRD~~G~iQ~v~~~~-----~~~~~~~~~l~~Es~I~V~G~V~~r~~~n~~~~tG~iEi~v~~i~iL~~a 103 (104)
T d1l0wa1 36 FLDLRDREGLVQLVAHPA-----SPAYATAERVRPEWVVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEA 103 (104)
T ss_dssp EEEEEETTEEEEEEECTT-----STTHHHHTTCCTTCEEEEEEEEEECSSCCTTSTTTTEEEEEEEEEEEECC
T ss_pred EEEEECCCCceEEecccc-----hhHHHHHhhcCcccEEEEEEEEeeCCccCCCCCCCCEEEEEeEEEEEEcC
Confidence 345667777888887652 345678899999999999999863 2368999999999999987
|
| >d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.38 E-value=9.9e-05 Score=73.67 Aligned_cols=108 Identities=16% Similarity=0.191 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHh--hhCCeEEEecceecccc----CC---CCC-------------c------ceeecc---CCCCc
Q psy11418 211 FIVRAQIIAYVRRYL--DSLGFLEVETPMMNMIA----GG---ATA-------------K------PFVTHH---NDLNM 259 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl--~~~gF~EV~TPil~~~~----gg---a~a-------------~------~F~t~~---~~~~~ 259 (553)
.++|..|++.+|+.+ .+.|+.||.||+|++.. .| .-+ + .|.+.. ..-+.
T Consensus 39 ~~l~~~i~~~wr~~~v~~~~~~~ev~tp~i~~~~lw~~SGH~~~f~d~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (331)
T d1b76a2 39 VELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNAKARYWTPPRYFNMMFQDLRGPRGGRGL 118 (331)
T ss_dssp HHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEEHHHHHHTSHHHHCEEEECBSSSCBCCCCCEEEECCEEEECSSSCCGGG
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEEeccccCChHHhccCccccccCCceeeecccccccCccchhhccccccccccccCC
Confidence 468999999999987 57799999999996421 11 000 1 111211 11245
Q ss_pred ceeeee--CHHHHHH---HHHH--ccCC-cEEEEccccccCCCCC---CccCCcceeeeEeccCCHHHHHH
Q psy11418 260 DLYMRI--APELYLK---MLVV--GGLD-RVYEVGRQFRNEGIDL---THNPEFTTCEFYMAYADYNDLMH 319 (553)
Q Consensus 260 ~~~L~~--Spql~lk---~l~~--~g~~-rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~ 319 (553)
..||+. +...+.. .+.. ..+. |++|||.|||||.+.. .+.-||||.|+|. |.+-++..+
T Consensus 119 ~~~lr~~t~~~~~~~~~~~~~~syk~LP~~~aqig~~fR~E~s~~~gl~RvReFtq~D~~~-F~~~~q~~~ 188 (331)
T d1b76a2 119 LAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEY-FVRPGEDEY 188 (331)
T ss_dssp EEEECSCTHHHHHTTHHHHHHHHTCCSSEEEEEEEEEECCCSSCCTTTTSCSEEEEEEEEE-EECGGGHHH
T ss_pred cccccCcchhhHHHHHHhHHhccccccchhhhhccceecccccccccccccchhhhhhhhh-hcCCcchhH
Confidence 678883 3333322 1111 2233 9999999999998754 3677999999998 454333333
|
| >d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]
Probab=97.35 E-value=0.00029 Score=67.69 Aligned_cols=106 Identities=22% Similarity=0.205 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhhhCCeEEEecceecccc-----CC----CCCcceeecc---CCCCcceeeeeCHHHHHHHHHHccC
Q psy11418 212 IVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-----GG----ATAKPFVTHH---NDLNMDLYMRIAPELYLKMLVVGGL 279 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~-----gg----a~a~~F~t~~---~~~~~~~~L~~Spql~lk~l~~~g~ 279 (553)
+++..|.+.+++.+ ++||.||.||+|.+.. +| -..+.|.+.. +..+.+++|+...+-..=.++....
T Consensus 34 ~i~~~i~~~~~~~~-~~G~~ev~~P~l~~~~~l~~~sgh~~~~~~e~f~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~ 112 (265)
T d1nj1a3 34 MIRKNTLKILRRIL-DRDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWV 112 (265)
T ss_dssp HHHHHHHHHHHHHH-TTTCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH-HhcCceehhhhhhhhhhhhhcccccccccccceeeeccCccccceeEEeecccccceEEeeeeee
Confidence 67888999999876 5699999999874211 11 1124454321 2235678999887766655544333
Q ss_pred C-------cEEEEccccccCCCCC---CccCCccee-eeEeccCCHHHHH
Q psy11418 280 D-------RVYEVGRQFRNEGIDL---THNPEFTTC-EFYMAYADYNDLM 318 (553)
Q Consensus 280 ~-------rVfei~~~FR~E~~~~---~H~~EFt~l-E~e~a~~~~~~~m 318 (553)
- |+|++|+|||+|...+ -+.-||+++ +.+....+-++..
T Consensus 113 ~SyrdLPlr~~q~~~~fR~E~~~~~Gl~R~reF~~~~d~~~~~~~~~~~~ 162 (265)
T d1nj1a3 113 RSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAE 162 (265)
T ss_dssp CBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHH
T ss_pred ccccccceEEEeeccceeeecccCcCCEEEEEEEEeccceeecCCHHHHH
Confidence 2 9999999999995544 378899866 5555556644433
|
| >d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Seryl-tRNA synthetase (SerRS) species: Thermus thermophilus, strain hb27 [TaxId: 274]
Probab=96.83 E-value=0.0015 Score=64.19 Aligned_cols=117 Identities=18% Similarity=0.267 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceeccc---cCCCCCcceeecc-CCCCcceeeeeCHHHHHHHHHHccC-----
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI---AGGATAKPFVTHH-NDLNMDLYMRIAPELYLKMLVVGGL----- 279 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~---~gga~a~~F~t~~-~~~~~~~~L~~Spql~lk~l~~~g~----- 279 (553)
+..++..++++.+.+++.++||+||.||.|... .|.+...-|.... ..-+.++||.-..|..+-.+...-.
T Consensus 54 ~~a~Le~AL~~~~ld~~~~~gy~~v~~P~lv~~~~~~~~G~~p~f~~~~y~~~~~~~~LipTsE~~l~~~~~~~i~~~~~ 133 (311)
T d1seta2 54 DLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAETDLYLTGTAEVVLNALHSGEILPYEA 133 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBTTSSEEECSSTHHHHHHTTTTCEEEGGG
T ss_pred HHHHHHHHHHHHHHHhhhcccceEEeechhhccchhhhcccccccccccccccccceeecccccchhhhhhhhhhhhhhh
Confidence 345677889999999999999999999999521 1111111232111 1235678999777776654432211
Q ss_pred -C-cEEEEccccccCCCC----CC---ccCCcceeeeEec-cCCHHHHHHHHHHHH
Q psy11418 280 -D-RVYEVGRQFRNEGID----LT---HNPEFTTCEFYMA-YADYNDLMHLTEDLI 325 (553)
Q Consensus 280 -~-rVfei~~~FR~E~~~----~~---H~~EFt~lE~e~a-~~~~~~~m~~~e~li 325 (553)
. |++.+++|||.|... ++ +..+|+..|.... ..+.++-....++++
T Consensus 134 LPlr~~~~s~cfR~Eag~~g~~trGL~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~ 189 (311)
T d1seta2 134 LPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELL 189 (311)
T ss_dssp CSEEEEEEEEEECCCCSCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHH
T ss_pred ccceEEeecccchhhhccccccchhhhhhcccchhhhheeeccccccchhHHHHHH
Confidence 1 899999999999643 33 7789999998754 335454444444443
|
| >d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Hypothetical protein YgiW family: Hypothetical protein YgiW domain: Hypothetical protein YgiW species: Escherichia coli [TaxId: 562]
Probab=95.64 E-value=0.027 Score=46.10 Aligned_cols=72 Identities=13% Similarity=0.207 Sum_probs=56.9
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeee
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPK 168 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~ 168 (553)
.+..|+|.|.|.+.-..- +-. ++|++|.|+|-++.+... -..++++|-|.|.|.+-+. -+..+|.|.
T Consensus 35 Ddt~V~L~G~Iv~~l~~d-~Y~---F~D~TG~I~VeId~~~w~--------g~~v~p~~kV~i~GevDk~-~~~~eIdV~ 101 (106)
T d1nnxa_ 35 DDTWVTLRGNIVERISDD-LYV---FKDASGTINVDIDHKRWN--------GVTVTPKDTVEIQGEVDKD-WNSVEIDVK 101 (106)
T ss_dssp SSEEEEEEEEEEEEEETT-EEE---EEETTEEEEEECCGGGST--------TCCCCTTSCEEEEEEEEEE-TTEEEEEEE
T ss_pred CCCeEEEEEEEEEEeCCc-eEE---EECCCCcEEEEEChhhcC--------CcccCCCCEEEEEEEEcCC-CCceEEEEE
Confidence 466799999998877654 444 599999999999776431 2368999999999999976 356799999
Q ss_pred eEEEe
Q psy11418 169 KLTLL 173 (553)
Q Consensus 169 ~i~il 173 (553)
.|++|
T Consensus 102 ~I~~l 106 (106)
T d1nnxa_ 102 QIRKV 106 (106)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 98875
|
| >d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 32 KDa subunit (RPA32) fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.30 E-value=0.049 Score=45.86 Aligned_cols=78 Identities=13% Similarity=0.181 Sum_probs=56.5
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCE-EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeee
Q psy11418 91 VTLSVAGRVHAIRESGTKLMFYDLRGEGL-KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKK 169 (553)
Q Consensus 91 ~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~ 169 (553)
..|++.|+|.++..... -+-+.|-|++| .|.|....+.. .. ......+..|+.|.|.|.+.. -.|+..|.+..
T Consensus 29 ~~V~iVG~V~~i~~~~t-~~~y~idDgTG~~i~v~~w~~~~--~~--~~~~~~i~~g~yVrV~G~lk~-f~~~~~i~~~~ 102 (128)
T d2pi2a1 29 SQVTIVGIIRHAEKAPT-NIVYKIDDMTAAPMDVRQWVDTD--DT--SSENTVVPPETYVKVAGHLRS-FQNKKSLVAFK 102 (128)
T ss_dssp SEEEEEEEEEEEEECSS-EEEEEEECSSSSCEEEEEECC-----------CCCCCTTCEEEEEEEEEE-ETTEEEEEEEE
T ss_pred EEEEEEEEEEEEEecCC-EEEEEEECCCCCcEEEEEECCCC--CC--ccccccccCCCEEEEEEEEEe-eCCeEEEEEEE
Confidence 36999999999999884 45569999999 59888876532 11 123457999999999999863 35677787777
Q ss_pred EEEec
Q psy11418 170 LTLLS 174 (553)
Q Consensus 170 i~il~ 174 (553)
+..+.
T Consensus 103 i~~v~ 107 (128)
T d2pi2a1 103 IMPLE 107 (128)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 76553
|
| >d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Archaeal ssDNA-binding protein species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.14 E-value=0.038 Score=45.70 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=55.7
Q ss_pred EEEEEEEEEee---ec----CC-CceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCce
Q psy11418 92 TLSVAGRVHAI---RE----SG-TKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGEL 163 (553)
Q Consensus 92 ~V~v~Gri~~~---R~----~g-~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~ 163 (553)
.|+|.|+|.++ |. .| +++..+.|.|++|++.+++-.+. ...|..||+|.++|--.+.-.|.+
T Consensus 14 ~v~i~~~V~~~~~~r~~~~~~g~~~v~~~~i~DeTG~i~~~~W~~~----------~~~l~~Gdvv~i~na~v~~~~g~~ 83 (115)
T d1o7ia_ 14 SVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKH----------AGSIKEGQVVKIENAWTTAFKGQV 83 (115)
T ss_dssp SEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGG----------TTCCCTTCEEEEEEEEEEEETTEE
T ss_pred CEEEEEEEEECCCCceeecCCCCEEEEEEEEEcCCCeEEEEEeccc----------cccCCCCCEEEEeeEEEEEECCeE
Confidence 48999999987 32 12 27888999999999999988642 245899999999977666678889
Q ss_pred eEeeeeEEEec
Q psy11418 164 SIIPKKLTLLS 174 (553)
Q Consensus 164 ~l~~~~i~il~ 174 (553)
+|.+.+...+.
T Consensus 84 el~~~~~s~i~ 94 (115)
T d1o7ia_ 84 QLNAGSKTKIA 94 (115)
T ss_dssp EEEECTTCEEE
T ss_pred EEEECCCeEEE
Confidence 99886643333
|
| >d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 70 KDa subunit (RPA70) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.39 E-value=0.042 Score=45.43 Aligned_cols=80 Identities=18% Similarity=0.193 Sum_probs=57.6
Q ss_pred EEEEEEEEEee------ec---CCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEee-ccc----
Q psy11418 92 TLSVAGRVHAI------RE---SGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGS-PGK---- 157 (553)
Q Consensus 92 ~V~v~Gri~~~------R~---~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~-~~~---- 157 (553)
.++|.|||.++ |. .| ++.-++|.|.+|.|++++..+.. + .+...|..|++..+.|- |..
T Consensus 14 ~~~I~~RV~~k~~~r~f~~~~~~g-~v~~~~l~De~G~I~~t~~~~~~---~---~f~~~l~~G~vy~i~~~~V~~~~~~ 86 (116)
T d1jmca1 14 KWTICARVTNKSQIRTWSNSRGEG-KLFSLELVDESGEIRATAFNEQV---D---KFFPLIEVNKVYYFSKGTLKIANKQ 86 (116)
T ss_dssp CCEEEEEEEEECCCEEEECSSCEE-EEEEEEEECSSCEEEEEEEHHHH---H---HHGGGCCTTCEEEEECCEEEECCGG
T ss_pred CEEEEEEEEEeccceEEECCCCCc-eEEEEEEEcCCCCEEEEEchhhh---h---hhHhhcccCCEEEEcceEEEEccCc
Confidence 47899999754 22 23 67888999999999999987542 2 34567999999999864 321
Q ss_pred --ccCCceeEeeeeEEEeccCCC
Q psy11418 158 --TKKGELSIIPKKLTLLSPCLH 178 (553)
Q Consensus 158 --t~~ge~~l~~~~i~il~~~~~ 178 (553)
+-.+.++|.....+.+.+|..
T Consensus 87 y~~~~~~yei~f~~~T~I~~~~d 109 (116)
T d1jmca1 87 FTAVKNDYEMTFNNETSVMPCED 109 (116)
T ss_dssp GCCCCCSEEEECCTTCEEEECCS
T ss_pred EeccCCcEEEEECCCcEEEECCC
Confidence 224678888877777766643
|
| >d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: RecG "wedge" domain domain: RecG "wedge" domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.07 E-value=0.31 Score=42.86 Aligned_cols=71 Identities=15% Similarity=0.198 Sum_probs=47.8
Q ss_pred CCcEEEEEEEEEeeec--C-CCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc-CCcee
Q psy11418 89 ENVTLSVAGRVHAIRE--S-GTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-KGELS 164 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~--~-g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~-~ge~~ 164 (553)
.|+.|+|.|+|.+.+. . +..+.-+.+.|+++.|.+++-.... -.. .. ....|+.|.|.|++.... .|.++
T Consensus 59 ~g~~vti~g~V~~~~~~~~~~~~~~~~~v~D~~g~i~l~fFn~~~-~~~----~~-k~~~G~~v~v~Gkvk~~~~~~~~q 132 (180)
T d1gm5a2 59 PGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQDY-LQT----YL-KQLTGKEVFVTGTVKSNAYTGQYE 132 (180)
T ss_dssp SSCCCEEEECCCCCEEEECSSCEEEEEEECCSSCCEEEEECSCCT-THH----HH-HTTCSSCEEEEEEECSCCTTSSCC
T ss_pred cceeeeeeeEEEeeccccccccceeEEEEEeccceEEEEEeCcHH-HHH----HH-hhhcCceEEEEEEEeeccccceee
Confidence 4667899999986542 2 2355568888999999998765432 111 11 234799999999987643 55555
Q ss_pred E
Q psy11418 165 I 165 (553)
Q Consensus 165 l 165 (553)
+
T Consensus 133 ~ 133 (180)
T d1gm5a2 133 I 133 (180)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain species: Thermus thermophilus [TaxId: 274]
Probab=88.82 E-value=0.23 Score=44.96 Aligned_cols=106 Identities=22% Similarity=0.109 Sum_probs=63.1
Q ss_pred HHHHHHHhhhCCeEEEecceecccc-----CCCCCcceeeccCCCC-cceeeeeCH--HHHHHHH--HHccC-C--cEEE
Q psy11418 218 IAYVRRYLDSLGFLEVETPMMNMIA-----GGATAKPFVTHHNDLN-MDLYMRIAP--ELYLKML--VVGGL-D--RVYE 284 (553)
Q Consensus 218 ~~~ir~fl~~~gF~EV~TPil~~~~-----gga~a~~F~t~~~~~~-~~~~L~~Sp--ql~lk~l--~~~g~-~--rVfe 284 (553)
.+.+|++|...||.||-|-.+++.. +.. ...... .|-.. ..-+||.|. .|-.-.- +..|. + |+||
T Consensus 21 ~~~ir~~L~~~Gf~Ev~tysf~s~~~~~~~~~~-~~~i~l-~NPis~e~~~lR~sLlpgLL~~~~~N~~r~~~~~~~lFE 98 (207)
T d1jjcb5 21 EQRLREVLSGLGFQEVYTYSFMDPEDARRFRLD-PPRLLL-LNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFE 98 (207)
T ss_dssp HHHHHHHHHHHTCEECCCCSEECTTHHHHTTCC-CCSCEE-SSCSSGGGSEECSCSHHHHHHHHHHHHHHSCCSEEEEEE
T ss_pred HHHHHHHHHHCCcchhcCCCcCCHHHHHhhcCC-CCcEEE-eCCcchhhhhhhhhcchHHHHHHHhCcccccccceeeEe
Confidence 3568999999999999999996421 111 122222 23332 335799884 3332211 11233 3 6899
Q ss_pred EccccccCCCCC-------CccCCcceeeeEeccCCHHHHHHHHHHHHhcc
Q psy11418 285 VGRQFRNEGIDL-------THNPEFTTCEFYMAYADYNDLMHLTEDLISGR 328 (553)
Q Consensus 285 i~~~FR~E~~~~-------~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~ 328 (553)
||++|+...... .+.++.|+-. .-.|+.++...++.++..+
T Consensus 99 iG~vf~~~~~~~~~~~~~g~~~~~~~~~~---~~~df~~~Kg~v~~ll~~l 146 (207)
T d1jjcb5 99 VGRVFREREETHLAGLLFGEGVGLPWAKE---RLSGYFLLKGYLEALFARL 146 (207)
T ss_dssp EEEEESSSEEEEEEEEEEESCBSCTTSSC---CBCHHHHHHHHHHHHHHHH
T ss_pred eeeeeeccccccchhhhhhcccccccccc---cchhHHHHHHHHHHHHHhh
Confidence 999998654321 2333333321 1236889999999998877
|
| >d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14) subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 14 KDa (RPA14) subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.31 E-value=1.6 Score=35.59 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=50.1
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeC-CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEe
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGE-GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSII 166 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~-~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~ 166 (553)
..|+.|++.|+|.+++..|+ . +.+++. ++.++|.+.... ....+-+|.|.|++. +..+|.
T Consensus 18 ~~Gk~V~ivGkV~~v~~~g~-~--~~~~s~D~~~V~v~l~~~~------------~~~~~~~vEViG~V~----~~~sI~ 78 (115)
T d2pi2e1 18 FIDKPVCFVGRLEKIHPTGK-M--FILSDGEGKNGTIELMEPL------------DEEISGIVEVVGRVT----AKATIL 78 (115)
T ss_dssp STTCEEEEEEEEEEECTTSS-E--EEEECTTSCEEEEECSSCC------------SSCCCSEEEEEEEEC----TTSCEE
T ss_pred hCCCeEEEEEEEEEEcCCCC-E--EEEEcCCCCEEEEEeCCCC------------CCccCCeEEEEEEEC----CCCcEE
Confidence 36889999999999998883 2 446653 457777766542 246788999999994 456788
Q ss_pred eeeEEEec
Q psy11418 167 PKKLTLLS 174 (553)
Q Consensus 167 ~~~i~il~ 174 (553)
+..+.-++
T Consensus 79 ~~~~~~fg 86 (115)
T d2pi2e1 79 CTSYVQFK 86 (115)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcC
Confidence 88877665
|
| >d1v1qa_ b.40.4.3 (A:) Primosomal replication protein N, PriB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Primosomal replication protein N, PriB species: Escherichia coli [TaxId: 562]
Probab=86.02 E-value=2.6 Score=33.81 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=50.0
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE------eCCE------EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEee
Q psy11418 92 TLSVAGRVHA---IRE--SGTKLMFYDLR------GEGL------KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGS 154 (553)
Q Consensus 92 ~V~v~Gri~~---~R~--~g~kl~Fi~l~------d~~~------~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~ 154 (553)
.|.|.|+|.+ +|. .|..++=+.|. +.+. .+.|++-.+.. + ...+.|..||.|.|+|.
T Consensus 8 ~v~L~G~l~~dpelr~T~~G~~v~~f~la~~~~~~e~~~~r~~~~~i~vv~~g~~A---e---~~~~~l~kG~~v~v~G~ 81 (111)
T d1v1qa_ 8 RLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHEN---Q---AITHSITVGSRITVQGF 81 (111)
T ss_dssp EEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGG---G---GGGTTCCTTCEEEEEEE
T ss_pred EEEEEEEecCCcceEECCCCCEEEEEEEEeccEEecccceEEEEEEEEEEEeCHHH---H---HHHHHhcCCCEEEEEEE
Confidence 5889999985 453 44444444442 1222 25555554431 1 23567999999999999
Q ss_pred ccc----ccCCceeEeeeeEEEecc
Q psy11418 155 PGK----TKKGELSIIPKKLTLLSP 175 (553)
Q Consensus 155 ~~~----t~~ge~~l~~~~i~il~~ 175 (553)
+.. .+.+.+.|+++.|++|..
T Consensus 82 L~~~~~~~~~~r~v~~a~~ie~l~s 106 (111)
T d1v1qa_ 82 ISCHKAKNGLSKMVLHAEQIELIDS 106 (111)
T ss_dssp EEEECTTTTSCEEEEEEEEEEETTS
T ss_pred EEEecccCCCCEEEEEEEEEEEecC
Confidence 863 234678899999999854
|
| >d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=84.91 E-value=0.21 Score=49.59 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=26.0
Q ss_pred cEEEEccccccCCCCC---CccCCcceeeeEeccCC
Q psy11418 281 RVYEVGRQFRNEGIDL---THNPEFTTCEFYMAYAD 313 (553)
Q Consensus 281 rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a~~~ 313 (553)
-+.+||++||||=+-. -+.-||+|+|+|. |.+
T Consensus 211 GiAQIGk~FRNEIsPr~~l~R~REF~q~EiE~-Fv~ 245 (394)
T d1atia2 211 GIAQIGKAFRNEITPRNFIFRVREFEQMEIEY-FVR 245 (394)
T ss_dssp EEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEE-EEC
T ss_pred eeeeeccccccccCcccCCcccccceeeeeEE-EEe
Confidence 6899999999995433 2788999999998 443
|