Psyllid ID: psy11420

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKFELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK
ccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHcccccccccccccccccccHHHccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccHHHcccccccccccccccccccccccccccEEEccccccccccccccccccccccHHHccHHHHHccccc
cccHHHHHHHHHccccccccccccccccccccccHccccccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHcHccccccHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccEEcHHHHHHHHHHHHHcccHHHcccccHHEEccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccccccccc
MTYQKLVSVLeslpkpkpaddaptslprecqgilhpdehlvptmkemgldessiplckfpggetEALKRLEKSLANKEWVRkfekpntapnslepsttvlspylkfgclSVRLFYHELKKILatgphakppvsllgqiyWREFYYVvgsdtpnfdkmkgnkiccqVDWDTNEKYLEAWshgktgypFIDAIMRQLRLEGWIHHLARHAVACFLtrgdlylsweEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFfrvyspvafgkktDKFELLLDADWAMNAGNWMWLSASAFFHQFfrvyspvafgkktdk
MTYQKLVSVLeslpkpkpaddaptsLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRkfekpntapnslepsttvLSPYLKFGCLSVRLFYHELKKIlatgphakppvSLLGQIYWREFYYVVGSDtpnfdkmkgnKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKFELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK
MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKFELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK
*************************************************************************************************TVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKFELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAF******
MTYQKLVSVLESLPKPKPA*************ILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKK************SLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKFELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVA*G*****
MTYQKLVSVLESLPKP********SLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKFELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK
MTYQKLVSVLESLPKPKPADDAP**LPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKFELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFG*****
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MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKFELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query315 2.2.26 [Sep-21-2011]
P97784 606 Cryptochrome-1 OS=Mus mus yes N/A 0.847 0.440 0.553 7e-85
Q32Q86 588 Cryptochrome-1 OS=Rattus yes N/A 0.847 0.454 0.553 8e-85
Q6ZZY0 620 Cryptochrome-1 OS=Sylvia N/A N/A 0.847 0.430 0.542 2e-84
Q8QG61 621 Cryptochrome-1 OS=Gallus yes N/A 0.847 0.429 0.542 2e-84
Q16526 586 Cryptochrome-1 OS=Homo sa yes N/A 0.847 0.455 0.542 8e-84
Q8WP19 586 Cryptochrome-1 OS=Macaca N/A N/A 0.847 0.455 0.542 1e-83
Q5IZC5 620 Cryptochrome-1 OS=Erithac N/A N/A 0.847 0.430 0.538 5e-83
Q0E2Y1551 (6-4)DNA photolyase OS=Or yes N/A 0.847 0.484 0.574 7e-83
Q70AD6 587 Cryptochrome-1 OS=Spalax N/A N/A 0.847 0.454 0.531 7e-82
Q9R194 592 Cryptochrome-2 OS=Mus mus no N/A 0.838 0.445 0.539 2e-80
>sp|P97784|CRY1_MOUSE Cryptochrome-1 OS=Mus musculus GN=Cry1 PE=1 SV=1 Back     alignment and function desciption
 Score =  313 bits (803), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 151/273 (55%), Positives = 192/273 (70%), Gaps = 6/273 (2%)

Query: 3   YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
           +Q LVS +E  P   PAD   + +  +C   L   H +++ VP+++E+G D   +    +
Sbjct: 153 FQTLVSKME--PLEMPADTITSDVIGKCMTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW 210

Query: 60  PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
           PGGETEAL RLE+ L  K WV  FE+P    NSL  S T LSPYL+FGCLS RLFY +L 
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270

Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
            +      ++ PP+SL GQ+ WREF+Y   ++ P FDKM+GN IC Q+ WD N + L  W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330

Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
           + G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG  VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390

Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
           ++NAG+WMWLS S+FF QFF  Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
Blue light-dependent regulator of the circadian feedback loop. Inhibits CLOCK|NPAS2-ARNTL E box-mediated transcription. Acts, in conjunction with CRY2, in maintaining period length and circadian rhythmicity. Has no photolyase activity. Capable of translocating circadian clock core proteins such as PER proteins to the nucleus. May inhibit CLOCK|NPAS2-ARNTL transcriptional activity through stabilizing the unphosphorylated form of ARNTL.
Mus musculus (taxid: 10090)
>sp|Q32Q86|CRY1_RAT Cryptochrome-1 OS=Rattus norvegicus GN=Cry1 PE=2 SV=1 Back     alignment and function description
>sp|Q6ZZY0|CRY1_SYLBO Cryptochrome-1 OS=Sylvia borin GN=CRY1 PE=2 SV=1 Back     alignment and function description
>sp|Q8QG61|CRY1_CHICK Cryptochrome-1 OS=Gallus gallus GN=CRY1 PE=2 SV=1 Back     alignment and function description
>sp|Q16526|CRY1_HUMAN Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1 Back     alignment and function description
>sp|Q8WP19|CRY1_MACFA Cryptochrome-1 OS=Macaca fascicularis GN=CRY1 PE=2 SV=1 Back     alignment and function description
>sp|Q5IZC5|CRY1_ERIRU Cryptochrome-1 OS=Erithacus rubecula GN=CRY1 PE=2 SV=2 Back     alignment and function description
>sp|Q0E2Y1|UVR3_ORYSJ (6-4)DNA photolyase OS=Oryza sativa subsp. japonica GN=UVR3 PE=3 SV=1 Back     alignment and function description
>sp|Q70AD6|CRY1_SPAJD Cryptochrome-1 OS=Spalax judaei GN=CRY1 PE=2 SV=1 Back     alignment and function description
>sp|Q9R194|CRY2_MOUSE Cryptochrome-2 OS=Mus musculus GN=Cry2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query315
193702257 535 PREDICTED: cryptochrome-1-like [Acyrthos 0.863 0.508 0.697 1e-111
312378885 558 hypothetical protein AND_09443 [Anophele 0.841 0.474 0.667 1e-107
158293404 556 AGAP008651-PA [Anopheles gambiae str. PE 0.860 0.487 0.664 1e-107
157115313 553 DNA photolyase [Aedes aegypti] gi|108883 0.857 0.488 0.653 1e-104
195030094 538 GH10854 [Drosophila grimshawi] gi|193903 0.857 0.501 0.661 1e-103
170065332 539 cryptochrome-1 [Culex quinquefasciatus] 0.850 0.497 0.655 1e-102
405975335 510 Cryptochrome-1 [Crassostrea gigas] 0.860 0.531 0.643 1e-102
195119085 532 GI19664 [Drosophila mojavensis] gi|19391 0.860 0.509 0.645 1e-100
194878837 540 GG21562 [Drosophila erecta] gi|190657323 0.844 0.492 0.634 2e-99
17137248 540 (6-4)-photolyase, isoform B [Drosophila 0.844 0.492 0.631 3e-99
>gi|193702257|ref|XP_001946012.1| PREDICTED: cryptochrome-1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/278 (69%), Positives = 225/278 (80%), Gaps = 6/278 (2%)

Query: 1   MTYQKLVSVLESLPKPKPADDAPTSLPREC--QGILHPDEHLVPTMKEM----GLDESSI 54
           MTYQK VSV+ S+P P+    AP  LP EC     L+  E  VPT+ E+    G + + +
Sbjct: 162 MTYQKFVSVVGSMPTPRRPIPAPDMLPSECLLDDDLNNPEFDVPTLDELLTLKGFNPAEL 221

Query: 55  PLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
             C +PGGE EAL+RLE+ + NK WV KFEKPNT+PNSL+PSTTVLSPY+KFGCLS   F
Sbjct: 222 KPCLYPGGEKEALRRLEEYMKNKTWVCKFEKPNTSPNSLKPSTTVLSPYMKFGCLSASHF 281

Query: 115 YHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKY 174
           Y+ LK+++   PH+KPPVSL+GQ+YWREFYY VG+ TPNFDKM GN ICCQV WD N   
Sbjct: 282 YYRLKEVIGNSPHSKPPVSLIGQLYWREFYYTVGASTPNFDKMVGNSICCQVPWDNNPDA 341

Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
           LEAW++GKTGYPFIDAIMRQLR EGWIHHLARHAVACFLTRGDL++SWE+G +VFEELLL
Sbjct: 342 LEAWTNGKTGYPFIDAIMRQLRDEGWIHHLARHAVACFLTRGDLWISWEKGLAVFEELLL 401

Query: 235 DADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
           DADW+MNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK
Sbjct: 402 DADWSMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 439

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|312378885|gb|EFR25332.1| hypothetical protein AND_09443 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|158293404|ref|XP_314748.3| AGAP008651-PA [Anopheles gambiae str. PEST] gi|157016689|gb|EAA10141.3| AGAP008651-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|157115313|ref|XP_001658195.1| DNA photolyase [Aedes aegypti] gi|108883518|gb|EAT47743.1| AAEL001175-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|195030094|ref|XP_001987903.1| GH10854 [Drosophila grimshawi] gi|193903903|gb|EDW02770.1| GH10854 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|170065332|ref|XP_001867895.1| cryptochrome-1 [Culex quinquefasciatus] gi|167882412|gb|EDS45795.1| cryptochrome-1 [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|405975335|gb|EKC39908.1| Cryptochrome-1 [Crassostrea gigas] Back     alignment and taxonomy information
>gi|195119085|ref|XP_002004062.1| GI19664 [Drosophila mojavensis] gi|193914637|gb|EDW13504.1| GI19664 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|194878837|ref|XP_001974136.1| GG21562 [Drosophila erecta] gi|190657323|gb|EDV54536.1| GG21562 [Drosophila erecta] Back     alignment and taxonomy information
>gi|17137248|ref|NP_477188.1| (6-4)-photolyase, isoform B [Drosophila melanogaster] gi|24585455|ref|NP_724274.1| (6-4)-photolyase, isoform A [Drosophila melanogaster] gi|442628599|ref|NP_001260632.1| (6-4)-photolyase, isoform C [Drosophila melanogaster] gi|442628601|ref|NP_001260633.1| (6-4)-photolyase, isoform D [Drosophila melanogaster] gi|7298691|gb|AAF53904.1| (6-4)-photolyase, isoform B [Drosophila melanogaster] gi|22946921|gb|AAN11080.1| (6-4)-photolyase, isoform A [Drosophila melanogaster] gi|201065459|gb|ACH92139.1| FI01404p [Drosophila melanogaster] gi|440213996|gb|AGB93167.1| (6-4)-photolyase, isoform C [Drosophila melanogaster] gi|440213997|gb|AGB93168.1| (6-4)-photolyase, isoform D [Drosophila melanogaster] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query315
FB|FBgn0016054540 phr6-4 "(6-4)-photolyase" [Dro 0.857 0.5 0.643 9.7e-96
ZFIN|ZDB-GENE-010426-8545 cry5 "cryptochrome 5" [Danio r 0.857 0.495 0.604 3.9e-92
ZFIN|ZDB-GENE-010426-7582 cry4 "cryptochrome 4" [Danio r 0.853 0.462 0.574 2.2e-82
MGI|MGI:1270841 606 Cry1 "cryptochrome 1 (photolya 0.847 0.440 0.553 2.5e-81
UNIPROTKB|E2RMX4 587 CRY1 "Uncharacterized protein" 0.847 0.454 0.545 3.2e-81
RGD|735083 588 Cry1 "cryptochrome 1 (photolya 0.847 0.454 0.553 3.2e-81
UNIPROTKB|Q32Q86 588 Cry1 "Cryptochrome-1" [Rattus 0.847 0.454 0.553 3.2e-81
UNIPROTKB|F1SPQ5 589 CRY1 "Uncharacterized protein" 0.847 0.453 0.545 4.1e-81
UNIPROTKB|E1C2Z9 624 CRY1 "Cryptochrome-1" [Gallus 0.847 0.427 0.542 6.6e-81
UNIPROTKB|F1NYE9 621 CRY1 "Cryptochrome-1" [Gallus 0.847 0.429 0.542 6.6e-81
FB|FBgn0016054 phr6-4 "(6-4)-photolyase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
 Identities = 179/278 (64%), Positives = 216/278 (77%)

Query:     1 MTYQKLVSVLESL--PK----PKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSI 54
             +TYQK + ++E L  PK    P+   + PT  P++         +  PTMK++      +
Sbjct:   157 ITYQKFLGIVEQLKVPKVLGVPEKLKNMPTP-PKDEVEQKDSAAYDCPTMKQLVKRPEEL 215

Query:    55 PLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
                KFPGGETEAL+R+E+SL ++ WV +FEKPNTAPNSLEPSTTVLSPYLKFGCLS RLF
Sbjct:   216 GPNKFPGGETEALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLF 275

Query:   115 YHELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEK 173
               +LK+I+   P H++PPVSL+GQ+ WREFYY V +  PNFD+M GN  C Q+ W  +  
Sbjct:   276 NQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQEHPD 335

Query:   174 YLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELL 233
             +LEAW+HG+TGYPFIDAIMRQLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VFE+LL
Sbjct:   336 HLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLL 395

Query:   234 LDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
             LD DWA+NAGNWMWLSASAFFHQ+FRVYSPVAFGKKTD
Sbjct:   396 LDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTD 433
GO:0006281 "DNA repair" evidence=ISS
GO:0003914 "DNA (6-4) photolyase activity" evidence=ISS;NAS
ZFIN|ZDB-GENE-010426-8 cry5 "cryptochrome 5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-010426-7 cry4 "cryptochrome 4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1270841 Cry1 "cryptochrome 1 (photolyase-like)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RMX4 CRY1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|735083 Cry1 "cryptochrome 1 (photolyase-like)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q32Q86 Cry1 "Cryptochrome-1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SPQ5 CRY1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1C2Z9 CRY1 "Cryptochrome-1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NYE9 CRY1 "Cryptochrome-1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O48652UVR3_ARATH4, ., 1, ., 9, 9, ., 1, 30.60250.73330.4154yesN/A
Q0E2Y1UVR3_ORYSJ4, ., 1, ., 9, 9, ., 1, 30.57450.84760.4845yesN/A
Q16526CRY1_HUMANNo assigned EC number0.54210.84760.4556yesN/A
Q8QG61CRY1_CHICKNo assigned EC number0.54210.84760.4299yesN/A
P97784CRY1_MOUSENo assigned EC number0.55310.84760.4405yesN/A
Q32Q86CRY1_RATNo assigned EC number0.55310.84760.4540yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
pfam03441276 pfam03441, FAD_binding_7, FAD binding domain of DN 8e-74
COG0415461 COG0415, PhrB, Deoxyribodipyrimidine photolyase [D 2e-43
TIGR03556471 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine 5e-33
TIGR02765429 TIGR02765, crypto_DASH, cryptochrome, DASH family 3e-32
PRK10674472 PRK10674, PRK10674, deoxyribodipyrimidine photolya 5e-30
TIGR02766475 TIGR02766, crypt_chrom_pln, cryptochrome, plant fa 3e-17
>gnl|CDD|217559 pfam03441, FAD_binding_7, FAD binding domain of DNA photolyase Back     alignment and domain information 
 Score =  227 bits (582), Expect = 8e-74
 Identities = 82/219 (37%), Positives = 112/219 (51%), Gaps = 12/219 (5%)

Query: 61  GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKK 120
           GGE  ALKRLE  L  KE +  + K    P      T+ LSPYL FG +S R  Y  ++K
Sbjct: 1   GGEKAALKRLESFL--KERLADYAKDRDDPA--ADGTSRLSPYLHFGEISPRQVYQAVRK 56

Query: 121 ILATGP---HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKY--- 174
                P     +   + L ++ WREFY  +    P+ ++   N     + W  +      
Sbjct: 57  AQGDSPEGGAKQGAEAFLSELIWREFYIQLLYHNPDLERENLNDAYDGLPWAKDRPDEYL 116

Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
           LEAW  G+TGYP +DA MRQLR  GW+H+  R  VA FLT+  L + W EG+  F E L+
Sbjct: 117 LEAWEEGRTGYPLVDAAMRQLRQTGWMHNRLRMIVASFLTK-KLLIDWREGEEYFAETLI 175

Query: 235 DADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
           DAD A N G W W + +      +FR+++PV    K D 
Sbjct: 176 DADPASNNGGWQWQAGTGTDAAPYFRIFNPVKQSDKFDP 214

Length = 276
>gnl|CDD|223492 COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|132595 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>gnl|CDD|234002 TIGR02765, crypto_DASH, cryptochrome, DASH family Back     alignment and domain information
>gnl|CDD|236734 PRK10674, PRK10674, deoxyribodipyrimidine photolyase; Provisional Back     alignment and domain information
>gnl|CDD|131813 TIGR02766, crypt_chrom_pln, cryptochrome, plant family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 315
COG0415461 PhrB Deoxyribodipyrimidine photolyase [DNA replica 100.0
TIGR02766475 crypt_chrom_pln cryptochrome, plant family. At lea 100.0
TIGR02765429 crypto_DASH cryptochrome, DASH family. Photolyases 100.0
TIGR03556471 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 100.0
PRK10674472 deoxyribodipyrimidine photolyase; Provisional 100.0
PF03441277 FAD_binding_7: FAD binding domain of DNA photolyas 100.0
TIGR00591454 phr2 photolyase PhrII. All proteins in this family 100.0
KOG0133|consensus531 100.0
COG3046505 Uncharacterized protein related to deoxyribodipyri 99.94
TIGR02766475 crypt_chrom_pln cryptochrome, plant family. At lea 99.5
COG0415461 PhrB Deoxyribodipyrimidine photolyase [DNA replica 99.44
TIGR02765429 crypto_DASH cryptochrome, DASH family. Photolyases 99.43
PRK10674472 deoxyribodipyrimidine photolyase; Provisional 99.32
TIGR03556471 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 99.29
PF03441277 FAD_binding_7: FAD binding domain of DNA photolyas 99.19
TIGR00591454 phr2 photolyase PhrII. All proteins in this family 98.93
KOG0133|consensus 531 98.6
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] Back     alignment and domain information 
Probab=100.00  E-value=5.3e-76  Score=565.78  Aligned_cols=271  Identities=31%  Similarity=0.537  Sum_probs=234.4

Q ss_pred             ChHhHHHHHhcCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCCCCCCCCCCccHHHHHHHHHHHHhcCcccc
Q psy11420          2 TYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVR   81 (315)
Q Consensus         2 tf~~F~~~~~~~~~p~~Pl~~P~~l~~~~~p~~~~~~~~ip~l~~lg~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~~~   81 (315)
                      +||+|+++++....+.+|.+.|..+...............|+  .+-+     ....|.|||.+|+++|++|+.++  +.
T Consensus       146 vfT~F~k~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~P~--~~~~-----~~~~~~~Ge~aA~~~l~~F~~~~--l~  216 (461)
T COG0415         146 VFTPFYKAWRDRLRILRPVPAPDVLDALRDEEPPPEEISLPD--FSKF-----DVLLFTGGEKAALARLQDFLAEG--LD  216 (461)
T ss_pred             ccchHHHHHHHhcccCCCCCCcchhccccccccCcccccCCc--cccc-----cccCCCchHHHHHHHHHHHHHHH--HH
Confidence            799999999988666678888875443211100012222333  1101     13568999999999999999986  89


Q ss_pred             cccccCCCCCCCCCCCCCCchhhhcCCCCHHHHHHHHHHHHhcCCCCCChHhHHHhHHHHHHHHHHhhcCCCc-ccccCC
Q psy11420         82 KFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF-DKMKGN  160 (315)
Q Consensus        82 ~Y~~~r~~~~~~~~~~S~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~~~~~~~~eL~WRef~~~~~~~~p~~-~~~~~~  160 (315)
                      +|++.|+.|.  .++||+|||||++|+||||+||+++.+....  ..+++++|+.||+|||||++++.++|+. ...+..
T Consensus       217 ~Y~~~Rd~p~--~~~TS~LSpyL~~G~IS~r~v~~~~~~~~~~--~~~~~~~~~~eL~WREFy~h~~~~~p~~~~~~~~~  292 (461)
T COG0415         217 DYERTRDFPA--LDGTSRLSPYLAFGVISPREVYAALLAAESD--AREGTAALINELIWREFYQHLLYHYPSLSRFEPFA  292 (461)
T ss_pred             HHHHhcCCcc--cccccccCHHHHcCCcCHHHHHHHHHHhhhc--ccchHHHHHHHHHHHHHHHHHHHhCCccccccccc
Confidence            9999999887  7899999999999999999999999887642  4567889999999999999999999988 566778


Q ss_pred             ccccCCCCCCChHHHHHHHcCCCCChHHHHHHHHHHHhcccCchhHHHHHHHhhhhccCCChHHHHHHHHhhhcchhhhh
Q psy11420        161 KICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAM  240 (315)
Q Consensus       161 ~~~~~~~w~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~R~~vasfl~~~~l~~~W~~G~~~f~~~liD~d~a~  240 (315)
                      .....++|..++..|++|++|+|||||||||||||++|||||||+||+||||||| +|.||||.|++||+++|||||+++
T Consensus       293 ~~~~~~~w~~~~~~f~aW~~G~TGyPIVDA~MRqL~~TG~MHNR~RMivAsFL~k-~L~IdWR~GE~~F~~~LiD~D~as  371 (461)
T COG0415         293 EKTLNIPWEDNPAHFQAWQEGKTGYPIVDAAMRQLNQTGYMHNRMRMIVASFLTK-DLLIDWREGEKYFMRQLIDGDPAS  371 (461)
T ss_pred             ccccCCccccCHHHHHHHhcCCCCCccccHHHHHHHHhCCcchHHHHHHHHHHHH-hcCCCHHHHHHHHHHhccCCCccc
Confidence            8889999999999999999999999999999999999999999999999999998 999999999999999999999999


Q ss_pred             hhhhHhhhhccccc-cccccccCHHHHHHhcCcccchhhhhhhcccCC
Q psy11420        241 NAGNWMWLSASAFF-HQFFRVYSPVAFGKKTDKFELLLDADWAMNAGN  287 (315)
Q Consensus       241 n~~~W~~~ag~g~~-~~~~r~~~p~~~~~~~dp~g~~Ir~~w~~~~~~  287 (315)
                      |+|||||+||+|++ .+|||||||++|+++|||+|+|||+ |+|++.+
T Consensus       372 N~ggWQW~AstG~Da~pyfRiFNp~~Q~~kfDp~g~fIr~-wvPeL~~  418 (461)
T COG0415         372 NNGGWQWAASTGTDAAPYFRIFNPVTQAEKFDPDGEFIRR-WVPELRN  418 (461)
T ss_pred             CCCCeeEEeccCCCCCcceeccCHHHHHhhcCCCcccHHh-hCHHhhC
Confidence            99999999999995 4899999999999999999999997 9988765

>TIGR02766 crypt_chrom_pln cryptochrome, plant family Back     alignment and domain information
>TIGR02765 crypto_DASH cryptochrome, DASH family Back     alignment and domain information
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>PRK10674 deoxyribodipyrimidine photolyase; Provisional Back     alignment and domain information
>PF03441 FAD_binding_7: FAD binding domain of DNA photolyase from Prosite Back     alignment and domain information
>TIGR00591 phr2 photolyase PhrII Back     alignment and domain information
>KOG0133|consensus Back     alignment and domain information
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only] Back     alignment and domain information
>TIGR02766 crypt_chrom_pln cryptochrome, plant family Back     alignment and domain information
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR02765 crypto_DASH cryptochrome, DASH family Back     alignment and domain information
>PRK10674 deoxyribodipyrimidine photolyase; Provisional Back     alignment and domain information
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>PF03441 FAD_binding_7: FAD binding domain of DNA photolyase from Prosite Back     alignment and domain information
>TIGR00591 phr2 photolyase PhrII Back     alignment and domain information
>KOG0133|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
3cvu_A543 Drosophila Melanogaster (6-4) Photolyase Bound To D 1e-102
3cvw_A543 Drosophila Melanogaster (6-4) Photolyase H365n Muta 1e-101
3cvx_A543 Drosophila Melanogaster (6-4) Photolyase H369m Muta 1e-101
3fy4_A537 (6-4) Photolyase Crystal Structure Length = 537 4e-81
4gu5_A539 Structure Of Full-Length Drosophila Cryptochrome Le 1e-46
1owl_A484 Structure Of Apophotolyase From Anacystis Nidulans 5e-29
1tez_A474 Complex Between Dna And The Dna Photolyase From Ana 5e-29
1dnp_A471 Structure Of Deoxyribodipyrimidine Photolyase Lengt 9e-25
2e0i_A440 Crystal Structure Of Archaeal Photolyase From Sulfo 3e-24
2j4d_A525 Cryptochrome 3 From Arabidopsis Thaliana Length = 5 3e-23
2ijg_X526 Crystal Structure Of Cryptochrome 3 From Arabidopsi 3e-23
2vtb_B525 Structure Of Cryptochrome 3 - Dna Complex Length = 1e-22
1np7_A489 Crystal Structure Analysis Of Synechocystis Sp. Pcc 3e-22
1iqr_A420 Crystal Structure Of Dna Photolyase From Thermus Th 1e-17
1u3c_A509 Crystal Structure Of The Phr Domain Of Cryptochrome 2e-13
>pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Back     alignment and structure 
Iteration: 1

 Score =  367 bits (941), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/282 (63%), Positives = 215/282 (76%), Gaps = 16/282 (5%)
Query: 1   MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLV----------PTMKEMGLD 50
           +TYQK + ++E L  PK        +P + + +  P +  V          PTMK++   
Sbjct: 180 ITYQKFLGIVEQLKVPKV-----LGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKR 234
Query: 51  ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLS 110
              +   KFPGGETEAL+R+E+SL ++ WV +FEKPNTAPNSLEPSTTVLSPYLKFGCLS
Sbjct: 235 PEELGPNKFPGGETEALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLS 294
Query: 111 VRLFYHELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWD 169
            RLF  +LK+I+   P H++PPVSL+GQ+ WREFYY V +  PNFD+M GN  C Q+ W 
Sbjct: 295 ARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQ 354
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
            +  +LEAW+HG+TGYPFIDAIMRQLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VF
Sbjct: 355 EHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVF 414
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
           E+LLLD DWA+NAGNWMWLSASAFFHQ+FRVYSPVAFGKKTD
Sbjct: 415 EQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTD 456
>pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant Bound To Ds Dna With A T-T (6-4) Photolesion And Cofactor F0 Length = 543 Back     alignment and structure
>pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Back     alignment and structure
>pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure Length = 537 Back     alignment and structure
>pdb|4GU5|A Chain A, Structure Of Full-Length Drosophila Cryptochrome Length = 539 Back     alignment and structure
>pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans Length = 484 Back     alignment and structure
>pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis Nidulans Length = 474 Back     alignment and structure
>pdb|1DNP|A Chain A, Structure Of Deoxyribodipyrimidine Photolyase Length = 471 Back     alignment and structure
>pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus Tokodaii With Two Fad Molecules: Implication Of A Novel Light-Harvesting Cofactor Length = 440 Back     alignment and structure
>pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana Length = 525 Back     alignment and structure
>pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis Thaliana Length = 526 Back     alignment and structure
>pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex Length = 525 Back     alignment and structure
>pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803 Cryptochrome Length = 489 Back     alignment and structure
>pdb|1IQR|A Chain A, Crystal Structure Of Dna Photolyase From Thermus Thermophilus Length = 420 Back     alignment and structure
>pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From Arabidopsis Thaliana Length = 509 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
2wq7_A543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 1e-117
3fy4_A537 6-4 photolyase; DNA repair, clock cryptochrome; HE 1e-113
3tvs_A538 Cryptochrome-1; circadian clock light entrainment, 1e-106
2j4d_A525 Cryptochrome 3, cryptochrome DASH; DNA-binding pro 1e-93
1np7_A489 DNA photolyase; protein with FAD cofactor; HET: DN 2e-89
1owl_A484 Photolyase, deoxyribodipyrimidine photolyase; DNA 9e-44
2e0i_A440 432AA long hypothetical deoxyribodipyrimidine PHO; 1e-43
1dnp_A471 DNA photolyase; DNA repair, electron transfer, exc 6e-43
2j07_A420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 9e-43
1u3d_A509 Cryptochrome 1 apoprotein; photolyase, AMPPNP, sig 2e-40
2xry_A482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 6e-37
3umv_A506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 4e-28
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Length = 543 Back     alignment and structure
 Score =  346 bits (891), Expect = e-117
 Identities = 172/274 (62%), Positives = 210/274 (76%), Gaps = 5/274 (1%)

Query: 3   YQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHL---VPTMKEMGLDESSIPLCKF 59
           +  +V  L+ +PK     +   ++P   +  +   +      PTMK++      +   KF
Sbjct: 185 FLGIVEQLK-VPKVLGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKF 243

Query: 60  PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
           PGGETEAL+R+E+SL ++ WV +FEKPNTAPNSLEPSTTVLSPYLKFGCLS RLF  +LK
Sbjct: 244 PGGETEALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLK 303

Query: 120 KILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
           +I+   P H++PPVSL+GQ+ WREFYY V +  PNFD+M GN  C Q+ W  +  +LEAW
Sbjct: 304 EIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQEHPDHLEAW 363

Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
           +HG+TGYPFIDAIMRQLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VFE+LLLD DW
Sbjct: 364 THGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDW 423

Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
           A+NAGNWMWLSASAFFHQ+FRVYSPVAFGKKTD 
Sbjct: 424 ALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDP 457
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Length = 537 Back     alignment and structure
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* Length = 525 Back     alignment and structure
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Length = 489 Back     alignment and structure
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Length = 484 Back     alignment and structure
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii} Length = 440 Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Length = 471 Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Length = 420 Back     alignment and structure
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Length = 509 Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Length = 482 Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Length = 506 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query315
3fy4_A537 6-4 photolyase; DNA repair, clock cryptochrome; HE 100.0
3tvs_A538 Cryptochrome-1; circadian clock light entrainment, 100.0
2wq7_A543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 100.0
1np7_A489 DNA photolyase; protein with FAD cofactor; HET: DN 100.0
1owl_A484 Photolyase, deoxyribodipyrimidine photolyase; DNA 100.0
1u3d_A509 Cryptochrome 1 apoprotein; photolyase, AMPPNP, sig 100.0
1dnp_A471 DNA photolyase; DNA repair, electron transfer, exc 100.0
2j4d_A525 Cryptochrome 3, cryptochrome DASH; DNA-binding pro 100.0
2j07_A420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 100.0
2e0i_A440 432AA long hypothetical deoxyribodipyrimidine PHO; 100.0
2xry_A482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 100.0
3umv_A506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 100.0
3zxs_A522 Cryptochrome B, rscryb; lyase, cryPro, lumazine, i 100.0
1u3d_A509 Cryptochrome 1 apoprotein; photolyase, AMPPNP, sig 99.38
3fy4_A 537 6-4 photolyase; DNA repair, clock cryptochrome; HE 99.34
1np7_A489 DNA photolyase; protein with FAD cofactor; HET: DN 99.33
3tvs_A538 Cryptochrome-1; circadian clock light entrainment, 99.3
2j4d_A525 Cryptochrome 3, cryptochrome DASH; DNA-binding pro 99.28
1dnp_A471 DNA photolyase; DNA repair, electron transfer, exc 99.26
2e0i_A440 432AA long hypothetical deoxyribodipyrimidine PHO; 99.25
2wq7_A543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 99.24
2j07_A420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 99.21
1owl_A484 Photolyase, deoxyribodipyrimidine photolyase; DNA 99.19
2xry_A482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 98.83
3umv_A506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 98.71
3zxs_A522 Cryptochrome B, rscryb; lyase, cryPro, lumazine, i 96.06
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=2.5e-74  Score=572.57  Aligned_cols=285  Identities=52%  Similarity=0.956  Sum_probs=242.3

Q ss_pred             CChHhHHHHHhcCCCCCCC-CCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCCCC-CCCCCCccHHHHHHHHHHHHhcCc
Q psy11420          1 MTYQKLVSVLESLPKPKPA-DDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSI-PLCKFPGGETEALKRLEKSLANKE   78 (315)
Q Consensus         1 ~tf~~F~~~~~~~~~p~~P-l~~P~~l~~~~~p~~~~~~~~ip~l~~lg~~~~~~-~~~~~~gGe~~A~~~L~~Fl~~~~   78 (315)
                      .|||+|++++++...++.| .+.|..++..+. ........+|++++||+..... ....|+|||++|+++|+.||+++.
T Consensus       159 ~vftpf~k~~~~~~~~~~p~~~~p~~~~~~~~-~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~  237 (537)
T 3fy4_A          159 LSYQSFLKVAGEPSCAKSELVMSYSSLPPIGD-IGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKA  237 (537)
T ss_dssp             SSHHHHHHHHCCCTTTTCCCCCCCSCCCCCCC-CCSSCCCCCCCTTTTTCCGGGSSCCCSCCCSHHHHHHHHHHHTCCHH
T ss_pred             CccCHHHHHHHhhcCCcCCCCCccccCCCccc-ccccccccCCcHHhcCCCcccccccCCCCccHHHHHHHHHHHHhCch
Confidence            4899999999987543444 344444543211 1112345688888998764321 123599999999999999998743


Q ss_pred             ccccccccCCCCCC-CCCCCCCCchhhhcCCCCHHHHHHHHHHHHhcC-CCCCChHhHHHhHHHHHHHHHHhhcCCCccc
Q psy11420         79 WVRKFEKPNTAPNS-LEPSTTVLSPYLKFGCLSVRLFYHELKKILATG-PHAKPPVSLLGQIYWREFYYVVGSDTPNFDK  156 (315)
Q Consensus        79 ~~~~Y~~~r~~~~~-~~~~~S~LSpyL~~G~lS~r~v~~~~~~~~~~~-~~~~~~~~~~~eL~WRef~~~~~~~~p~~~~  156 (315)
                      ++..|++.|+.|+. ...+||+|||||++||||||+|++++.+...+. ....+.++|++||+|||||+++++++|++..
T Consensus       238 ~l~~Y~~~rd~p~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~  317 (537)
T 3fy4_A          238 WVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLGQLLWREFFYTTAFGTPNFDK  317 (537)
T ss_dssp             HHHTCCGGGCCTTCCSSCSSCCCHHHHHTTSSCHHHHHHHHHHHHHTTSCCCCTTTSHHHHHHHHHHHHHHHHTCTTTTS
T ss_pred             HHhhhcccccCccccCCCCCccCCHHHhCCCcCHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHCcchhc
Confidence            48899999998863 247999999999999999999999998865432 2345678999999999999999999999998


Q ss_pred             ccCCccccCCCCCCChHHHHHHHcCCCCChHHHHHHHHHHHhcccCchhHHHHHHHhhhhccCCChHHHHHHHHhhhcch
Q psy11420        157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA  236 (315)
Q Consensus       157 ~~~~~~~~~~~w~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~R~~vasfl~~~~l~~~W~~G~~~f~~~liD~  236 (315)
                      .++++.+..++|+.|++.|++|++|+||+|||||+||||++|||||||+||||||||||++|+|||+.|++||+++||||
T Consensus       318 ~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~vDA~MrqL~~tG~mHnr~Rm~vAsfl~k~~L~idWr~G~~~F~~~liD~  397 (537)
T 3fy4_A          318 MKGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDS  397 (537)
T ss_dssp             STTCTTSCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCBCHHHHHHHHHHHCTTC
T ss_pred             ccCChhhhcCCchhhhHHHHHHHcCCCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHcccc
Confidence            88899999999999999999999999999999999999999999999999999999994489999999999999999999


Q ss_pred             hhhhhhhhHhhhhccccccccccccCHHHHHHhcCcccchhhhhhhcccCC
Q psy11420        237 DWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKFELLLDADWAMNAGN  287 (315)
Q Consensus       237 d~a~n~~~W~~~ag~g~~~~~~r~~~p~~~~~~~dp~g~~Ir~~w~~~~~~  287 (315)
                      |+++|++||||+||+|++..|+|||||++|+++|||+|+|||+ |+|++..
T Consensus       398 D~a~n~g~Wqw~ag~g~d~~~fRifNP~~Q~~kfDp~G~yIr~-wvPEL~~  447 (537)
T 3fy4_A          398 DWAINNGNWMWLSCSSFFYQFNRIYSPISFGKKYDPDGKYIRH-FLPVLKD  447 (537)
T ss_dssp             CHHHHHHHHHHHTTSSSCCCTTCCCCTTTTGGGTCTTCHHHHH-HCGGGTT
T ss_pred             ccccChHhhhhhcccCCCcccccccCHHHHHHHhCCCchHHHH-hCHhhcC
Confidence            9999999999999999977799999999999999999999997 9998765
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Back     alignment and structure
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Back     alignment and structure
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Back     alignment and structure
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii} Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Back     alignment and structure
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides} Back     alignment and structure
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Back     alignment and structure
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Back     alignment and structure
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii} Back     alignment and structure
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Back     alignment and structure
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Back     alignment and structure
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 315
d1dnpa1269 a.99.1.1 (A:201-469) C-terminal domain of DNA phot 9e-32
d1np7a1279 a.99.1.1 (A:205-483) Cryptochrome C-terminal domai 4e-31
d1owla1271 a.99.1.1 (A:205-475) C-terminal domain of DNA phot 7e-26
d1u3da1300 a.99.1.1 (A:198-497) Cryptochrome C-terminal domai 6e-24
d2j07a1234 a.99.1.1 (A:172-405) C-terminal domain of DNA phot 7e-23
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase {Escherichia coli [TaxId: 562]} Length = 269 Back     information, alignment and structure

class: All alpha proteins
fold: Cryptochrome/photolyase FAD-binding domain
superfamily: Cryptochrome/photolyase FAD-binding domain
family: Cryptochrome/photolyase FAD-binding domain
domain: C-terminal domain of DNA photolyase
species: Escherichia coli [TaxId: 562]

 Score =  117 bits (293), Expect = 9e-32
 Identities = 70/215 (32%), Positives = 102/215 (47%), Gaps = 7/215 (3%)

Query: 60  PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
           P  E  A+ +L +   N     ++E+    P      T+ LS  L  G LS R   H L 
Sbjct: 1   PVEEKAAIAQLRQFCQNG--AGEYEQQRDFPA--VEGTSRLSASLATGGLSPRQCLHRLL 56

Query: 120 KILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICC-QVDWDTNEKYLEAW 178
                          L ++ WREFY  + +  P+  K +       +V W +N  +L+AW
Sbjct: 57  AEQPQALDGGAGSVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAW 116

Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
             GKTGYP +DA MRQL   GW+H+  R   A FL + DL + W EG+  F   L+D D 
Sbjct: 117 QEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK-DLLIDWREGERYFMSQLIDGDL 175

Query: 239 AMNAGNWMWLSASA-FFHQFFRVYSPVAFGKKTDK 272
           A N G W W +++      +FR+++P   G+K D 
Sbjct: 176 AANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDH 210
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]} Length = 279 Back     information, alignment and structure
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Length = 271 Back     information, alignment and structure
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 300 Back     information, alignment and structure
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase {Thermus thermophilus [TaxId: 274]} Length = 234 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query315
d1np7a1279 Cryptochrome C-terminal domain {Synechocystis sp., 100.0
d1u3da1300 Cryptochrome C-terminal domain {Thale cress (Arabi 100.0
d1owla1271 C-terminal domain of DNA photolyase {Synechococcus 100.0
d1dnpa1269 C-terminal domain of DNA photolyase {Escherichia c 100.0
d2j07a1234 C-terminal domain of DNA photolyase {Thermus therm 100.0
d1owla1271 C-terminal domain of DNA photolyase {Synechococcus 99.19
d1np7a1279 Cryptochrome C-terminal domain {Synechocystis sp., 99.16
d1u3da1300 Cryptochrome C-terminal domain {Thale cress (Arabi 99.13
d1dnpa1269 C-terminal domain of DNA photolyase {Escherichia c 99.11
d2j07a1234 C-terminal domain of DNA photolyase {Thermus therm 98.69
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
class: All alpha proteins
fold: Cryptochrome/photolyase FAD-binding domain
superfamily: Cryptochrome/photolyase FAD-binding domain
family: Cryptochrome/photolyase FAD-binding domain
domain: Cryptochrome C-terminal domain
species: Synechocystis sp., pcc 6803 [TaxId: 1143]

Probab=100.00  E-value=4.5e-68  Score=487.52  Aligned_cols=229  Identities=28%  Similarity=0.517  Sum_probs=205.9

Q ss_pred             CCCCCccHHHHHHHHHHHHhcCcccccccccCCCCCCCCCCCCCCchhhhcCCCCHHHHHHHHHHHHhcCCCCCChHhHH
Q psy11420         56 LCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLL  135 (315)
Q Consensus        56 ~~~~~gGe~~A~~~L~~Fl~~~~~~~~Y~~~r~~~~~~~~~~S~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~~~~~~~  135 (315)
                      ...|+|||++|+++|++||+++..+..|++.|+.+.. .++||+|||||++||||||+|++++.+.........+.+.|+
T Consensus         5 ~~~f~gGe~~Al~~L~~Fl~~~~~l~~Y~~~Rn~~~~-~~~~S~LSPyL~~G~LS~rev~~~~~~~~~~~~~~~~~~~~~   83 (279)
T d1np7a1           5 VLAFQGGETAGLARLQDYFWHGDRLKDYKETRNGMVG-ADYSSKFSPWLALGCLSPRFIYQEVKRYEQERVSNDSTHWLI   83 (279)
T ss_dssp             SCCCCCSHHHHHHHHHHHHTTSCCGGGHHHHTTCCSS-STTSCCCHHHHHTTSSCHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred             cCCCCChHHHHHHHHHHHHhcccchhhhhHhcCCCCC-CCCccccCHHHcCCccCHHHHHHHHHHHhhcccccchHHHHH
Confidence            4569999999999999999754458999999986542 578999999999999999999999987765444455678899


Q ss_pred             HhHHHHHHHHHHhhcCCCcccccCCccccCCCCCCChHHHHHHHcCCCCChHHHHHHHHHHHhcccCchhHHHHHHHhhh
Q psy11420        136 GQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR  215 (315)
Q Consensus       136 ~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~R~~vasfl~~  215 (315)
                      ++|+|||||++++.++|+....+.......++|..+++.+++|++|+||+||||||||||++|||||||+|||||||||+
T Consensus        84 ~~l~WRef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~G~TG~p~vDAamr~L~~tG~~Hn~~Rm~vasfl~~  163 (279)
T d1np7a1          84 FELLWRDFFRFVAQKYGNKLFNRGGLLNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCK  163 (279)
T ss_dssp             HHHHHHHHHHHHHHHHGGGGGSTTTTTTCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhhcchhhhhccccchhhhccccccccchHHHHHHHHHHHHHccccHHHHHHHHHHHHh
Confidence            99999999999998888766566666677888999999999999999999999999999999999999999999999998


Q ss_pred             hccCCChHHHHHHHHhhhcchhhhhhhhhHhhhhccccccccccccCHHHHHHhcCcccchhhhhhhcccCC
Q psy11420        216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKFELLLDADWAMNAGN  287 (315)
Q Consensus       216 ~~l~~~W~~G~~~f~~~liD~d~a~n~~~W~~~ag~g~~~~~~r~~~p~~~~~~~dp~g~~Ir~~w~~~~~~  287 (315)
                       +|++||+.|++||+++|||||+++|++||||+||+|++..++|+|||++|++++||+|+|||+ |+|++-+
T Consensus       164 -~l~i~W~~g~~~f~~~liD~d~a~n~~~wq~~ag~~~~~~~~r~~np~~q~~~~Dp~g~~ir~-wvPeL~~  233 (279)
T d1np7a1         164 -NLGIDWRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDARDFRYFNIPKQSQQYDPQGTYLRH-WLPELKN  233 (279)
T ss_dssp             -TTCBCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTSSCCTTSCCCCCHHHHHHHHSTTSHHHHH-HCGGGTT
T ss_pred             -cceeccccchHHHHHHHHhcChhhhhHHhhhhhhhccccccccccCCcchHhhcCCCHHHHHH-HhHhhhc
Confidence             999999999999999999999999999999999998876667999999999999999999997 9998654
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure