Psyllid ID: psy11511

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-
Protein Sequence
MELAVGQFTRRGPIGESKLGVHFLVSPNCAPLQTKVSDWTSSFKIEVPLQYCTSIVGNIRVFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYYNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSKTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLYFRFCWSIAAPLLILIRISLTHLLGQLTNT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEccccEEHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHEEEEccccccccEEEEEEcHHHHHHHHHHHHcccccccccccEEEEcccccccccHHHHHHHHHHHHHHHccccccHHHccccccccccccEEEEEEEEEcccccHHHHHHHHHHHccccccccccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEcccccEEEEEHHHHHHHccccHHHHHHHHHHHHHHccccccEEEEEEEEEEEccccHHHHcccccEEEEHHHHHHHHHHHccccEEccEEEEEEEEcccccHHHHHHHHHHHHEEEEEEcccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHccccccHHEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHEEEccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHccccccccccEEEEEcccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccccHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccEEEEEcHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
melavgqftrrgpigesklgvhflvspncaplqtkvsdwtssfkievpLQYCTSIVGNIRVFLVPYFIILFLCGIPILYMELAvgqftrrgpigvlsklcpffkgagiSSVIISFFMSTYYNVLIAYSLYYFstsfrsqlpwqhcgnrwntqhcwvpptltgedlgAVSLLQnlskpvpsktpseefynisdemstcssysdsisdvgstfkprkrdhwtSKVQFILACVGYSigignlwrfphkvlqissgidqmGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFLCFSLtldgseiglryfflpnfellsdhKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIgnityehetSIENVILDGFISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIgnityehetsienvildgpglifvvypqalaklpfpnfWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFfglpyvtqggIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGsdklarnvhhmtgkfpslYFRFCWSIAAPLLILIRISLTHLLGQLTNT
Flexible Loop (DISEMBL)
melavgqftrrgpigesKLGVHFLVSPNCAPLQTKVSDWTSSFKIEVPLQYCTSIVGNIRVFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYYNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSKTPSEEFYNISDEMSTCSSYSDSISDVGStfkprkrdhwTSKVQFILACVGYSIGIGNLWRFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLYFRFCWSIAAPLLILIRISLTHLLGQLTNT
Low Complexity Region (SEG)
MELAVGQFTRRGPIGESKLGVHFLVSPNCAPLQTKVSDWTSSFKIEVPLQYCTSIVGNIRVFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYYNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSKTPSEEFYNISDEMstcssysdsisdvgsTFKPRKRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLYFRFCWSIAAPLLILIRISLTHLLGQLTNT
Disordered region (IsUnstruct)
*************IGESKLGVHFLVSPNCAPLQTKVSDWTSSFKIEVPLQYCTSIVGNIRVFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYYNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLL*********************************************DHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLYFRFCWSIAAPLLILIRISLTHLLGQ****
Disordered Region (DISOPRED)
******************************************FKIEVPLQYCTSIVGNIRVFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYYNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSKTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLYFRFCWSIAAPLLILIRISLTHLLGQLTN*
Disordered Region (DISEMBL)
MELAVGQFTRRGPIGESKLGVHFLVSPNCAPLQTKVSDWTSSFKIEVPLQYCTSIVGNIRVFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYYNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLS*********EEFYNISDEM*********************RDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLYFRFCWSIAAPLLILIRISLTHLLGQLTNT
Disordered Region (DISPRO)
************************************SDWTSSFKIEVPLQYCTSIVGNIRVFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYYNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSKTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILA*VGYSIGIGNLWRFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLYFRFCWSIAAPLLILIRISLTHLLGQLTN*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELAVGQFTRRGPIGESKLGVHFLVSPNCAPLQTKVSDWTSSFKIEVPLQYCTSIVGNIRVFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYYNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSKTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLYFRFCWSIAAPLLILIRISLTHLLGQLTNT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	631	2.2.26 [Sep-21-2011]
Q9VR07	943	Sodium- and chloride-depe	no	N/A	0.503	0.337	0.491	1e-104
P31649	602	Sodium- and chloride-depe	yes	N/A	0.690	0.724	0.323	1e-83
Q9Y345	797	Sodium- and chloride-depe	yes	N/A	0.732	0.579	0.327	7e-79
Q761V0	799	Sodium- and chloride-depe	no	N/A	0.732	0.578	0.327	3e-78
P58295	799	Sodium- and chloride-depe	yes	N/A	0.732	0.578	0.326	9e-78
O35899	630	Sodium-dependent serotoni	yes	N/A	0.687	0.688	0.310	2e-74
Q9MZ34	620	Sodium- and chloride-depe	no	N/A	0.692	0.704	0.322	4e-74
Q91502	611	Creatine transporter OS=T	N/A	N/A	0.689	0.711	0.310	2e-73
P31643	621	Sodium- and chloride-depe	no	N/A	0.692	0.703	0.320	2e-73
O35316	621	Sodium- and chloride-depe	no	N/A	0.692	0.703	0.317	3e-72

>sp|Q9VR07|INE_DROME Sodium- and chloride-dependent GABA transporter ine OS=Drosophila melanogaster GN=ine PE=1 SV=1

 Score =  378 bits (970), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/374 (49%), Positives = 244/374 (65%), Gaps = 56/374 (14%)

Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF 301
           F +KVLQIS G++  G  RWEL AC   +W++VYFA WKS++SS +V YFTAT PF+LI 
Sbjct: 491 FENKVLQISGGLEYPGMMRWELFACLICAWLMVYFATWKSIKSSAKVRYFTATFPFVLII 550

Query: 302 VFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKY 361
           + +  ++TLDG+  GLR+FF P +  L +  VW+NA +Q FNS+G      ITF S   +
Sbjct: 551 ILMVRAVTLDGAAEGLRFFFRPKWSELKNANVWINAASQNFNSLG------ITFGSMISF 604

Query: 362 NNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQI 421
                                                             +SYNKYNN I
Sbjct: 605 --------------------------------------------------ASYNKYNNNI 614

Query: 422 IVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLP 481
           + DT+ VS +N ITS+L+G+F F T+GN+  E  T++ +VI DGPG+IFVVYPQA+AK+P
Sbjct: 615 LRDTVAVSAVNMITSLLVGIFAFSTLGNLALEQNTNVRDVIGDGPGMIFVVYPQAMAKMP 674

Query: 482 FPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFF 541
           +   WAV+FFF LLCL LNSQFA+VEVVVTSIQDGFPRWIKR+L  HEIVVL VC++S  
Sbjct: 675 YAQLWAVMFFFMLLCLGLNSQFAIVEVVVTSIQDGFPRWIKRHLGYHEIVVLFVCVISCL 734

Query: 542 FGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSL 601
           FG+P + QGGIY+FQL+DHY AS  +M++AF +++A+AW YG+ +L++NV  MTGK PS 
Sbjct: 735 FGMPNIIQGGIYYFQLMDHYAASVTIMFLAFCQMIAIAWFYGTGRLSKNVKQMTGKAPSF 794

Query: 602 YFRFCWSIAAPLLI 615
           Y R CW +  P L+
Sbjct: 795 YLRSCWLVLGPCLL 808

Plays a role in neuronal membrane excitation, important for normal response properties of the photoreceptor. Able to control excitability from either neurons or glia cells. Ine negatively regulates neuronal sodium channels. Controls neurotransmitter-mediated signaling pathways associated with the structure of the larval peripheral nerve, ine and eag control perineurial glial growth through partially redundant pathways. Isoform A and isoform B are both functional, although isoform A functions with greater efficiency. Has a role in osmolyte transport within the Malpighian tubule and hindgut.
Drosophila melanogaster (taxid: 7227)

>sp|P31649|S6A13_MOUSE Sodium- and chloride-dependent GABA transporter 2 OS=Mus musculus GN=Slc6a13 PE=1 SV=1

 Score =  311 bits (796), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 180/557 (32%), Positives = 278/557 (49%), Gaps = 121/557 (21%)

Query: 61  VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
            F +PY I LF CGIP+ ++E A+GQ+T +G I    ++CP F+G G +S +I   ++ Y
Sbjct: 69  AFFIPYLIFLFTCGIPVFFLETALGQYTNQGGITAWRRICPIFEGIGYASQMIVSLLNVY 128

Query: 121 YNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPS 180
           Y V++A++L+Y  +SF + LPW  C + WNT++C                          
Sbjct: 129 YIVVLAWALFYLFSSFTTDLPWGSCSHEWNTENC-------------------------- 162

Query: 181 KTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLW 240
                EF   +D M+  S  + S                   ++F               
Sbjct: 163 ----VEFQKANDSMNVTSENATS-----------------PVIEF--------------- 186

Query: 241 RFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLI 300
            +  +VL++S GI  +G  RWELV C  ++WI+ YF +WK V+S+G+V+YFTAT P+L++
Sbjct: 187 -WERRVLKLSDGIQHLGSLRWELVLCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYLML 245

Query: 301 FVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNK 360
            V L   +TL G+  G++++  PN   L D +VW++AG QIF S                
Sbjct: 246 VVLLIRGVTLPGAAQGIQFYLYPNITRLWDPQVWMDAGTQIFFSFA-------------- 291

Query: 361 YNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQ 420
                                       I +G +T               + SYNKY+N 
Sbjct: 292 ----------------------------ICLGCLTA--------------LGSYNKYHNN 309

Query: 421 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKL 480
              D + + I+N+ TS + G  IF  +G ++ E    I  V   GPGL F+ YP+A+  L
Sbjct: 310 CYRDCIALCILNSSTSFMAGFAIFSILGFMSQEQGVPISEVAESGPGLAFIAYPRAVVML 369

Query: 481 PFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSF 540
           PF   WA  FFF ++ L L+SQF  VE +VT++ D +PR + R     E+++L+V ++SF
Sbjct: 370 PFSPLWACCFFFMVVLLGLDSQFVCVESLVTALVDMYPR-VFRKKNRREVLILIVSVISF 428

Query: 541 FFGLPYVTQGGIYFFQLIDHYTAS-TAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFP 599
           F GL  +T+GG+Y FQL D+Y AS   +++VA FE + VAW+YG+ +   N+  M G  P
Sbjct: 429 FIGLIMLTEGGMYVFQLFDYYAASGMCLLFVAIFESLCVAWVYGAGRFYDNIEDMIGYKP 488

Query: 600 SLYFRFCWSIAAPLLIL 616
               ++CW    P + L
Sbjct: 489 WPLIKYCWLFFTPAVCL 505

Terminates the action of GABA by its high affinity sodium-dependent reuptake into presynaptic terminals. Can also transport beta-alanine and taurine.

Mus musculus (taxid: 10090)

>sp|Q9Y345|SC6A5_HUMAN Sodium- and chloride-dependent glycine transporter 2 OS=Homo sapiens GN=SLC6A5 PE=1 SV=3

 Score =  295 bits (755), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 182/555 (32%), Positives = 287/555 (51%), Gaps = 93/555 (16%)

Query: 61  VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
            FL+PY ++L L G+PI ++E+++GQF  +GP+ V  K  P  +G GI+ +IIS  ++ Y
Sbjct: 228 AFLIPYLMMLALAGLPIFFLEVSLGQFASQGPVSVW-KAIPALQGCGIAMLIISVLIAIY 286

Query: 121 YNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPS 180
           YNV+I Y+L+Y   SF S LPW  C N WNT  C        +D     LL  L   V S
Sbjct: 287 YNVIICYTLFYLFASFVSVLPWGSCNNPWNTPEC--------KD--KTKLL--LDSCVIS 334

Query: 181 KTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLW 240
             P  +  N     + C +   +++ V  T +  K         F+     Y        
Sbjct: 335 DHPKIQIKN----STFCMTAYPNVTMVNFTSQANK--------TFVSGSEEY-------- 374

Query: 241 RFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLI 300
            F + VL+IS+GI+  G+ RW L  C F++W++VY +L K +++SG+V+YFTAT P++++
Sbjct: 375 -FKYFVLKISAGIEYPGEIRWPLALCLFLAWVIVYASLAKGIKTSGKVVYFTATFPYVVL 433

Query: 301 FVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNK 360
            + L            +R   LP             AGA I+  I            + K
Sbjct: 434 VILL------------IRGVTLPG------------AGAGIWYFIT---------PKWEK 460

Query: 361 YNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQ 420
             +  +       I  ++++   G+                         +SSYNK++N 
Sbjct: 461 LTDATVWKDAATQIFFSLSAAWGGLIT-----------------------LSSYNKFHNN 497

Query: 421 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKL 480
              DT++V+  N+ TS+  G  IF  IG +  E + +IENV   GPG+ FVVYP+AL +L
Sbjct: 498 CYRDTLIVTCTNSATSIFAGFVIFSVIGFMANERKVNIENVADQGPGIAFVVYPEALTRL 557

Query: 481 PFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSF 540
           P   FWA++FF  LL L L++ FA +E +VTSI D FP++++ +     +  L  CI  F
Sbjct: 558 PLSPFWAIIFFLMLLTLGLDTMFATIETIVTSISDEFPKYLRTH---KPVFTLGCCICFF 614

Query: 541 FFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPS 600
             G P +TQGGIY FQL+D Y AS A++ +A FE+V ++++YG  +   ++  M G  P+
Sbjct: 615 IMGFPMITQGGIYMFQLVDTYAASYALVIIAIFELVGISYVYGLQRFCEDIEMMIGFQPN 674

Query: 601 LYFRFCWSIAAPLLI 615
           ++++ CW+   P ++
Sbjct: 675 IFWKVCWAFVTPTIL 689

Terminates the action of glycine by its high affinity sodium-dependent reuptake into presynaptic terminals. May be responsible for the termination of neurotransmission at strychnine-sensitive glycinergic synapses.

Homo sapiens (taxid: 9606)

>sp|Q761V0|SC6A5_MOUSE Sodium- and chloride-dependent glycine transporter 2 OS=Mus musculus GN=Slc6a5 PE=2 SV=1

 Score =  293 bits (749), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 182/555 (32%), Positives = 286/555 (51%), Gaps = 93/555 (16%)

Query: 61  VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
            FL+PY ++L L G+PI ++E+++GQF  +GP+ V  K  P  +G GI+ +IIS  ++ Y
Sbjct: 230 AFLIPYLMMLALAGLPIFFLEVSLGQFASQGPVSVW-KAIPALQGCGIAMLIISVLIAIY 288

Query: 121 YNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPS 180
           YNV+I Y+L+Y   SF S LPW  C N WNT  C        +D     LL  L   V  
Sbjct: 289 YNVIICYTLFYLFASFVSVLPWGSCNNPWNTPEC--------KD--KTKLL--LDSCVIG 336

Query: 181 KTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLW 240
             P  +  N     + C +   +++ V  T +  K         F+     Y        
Sbjct: 337 DHPKIQIKN----STFCMTAYPNLTMVNFTSQTNK--------TFVSGSEEY-------- 376

Query: 241 RFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLI 300
            F + VL+IS+GI+  G+ RW L  C F++W++VY +L K ++SSG+V+YFTAT P++++
Sbjct: 377 -FKYFVLKISAGIEYPGEIRWPLAFCLFLAWVIVYASLAKGIKSSGKVVYFTATFPYVVL 435

Query: 301 FVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNK 360
            + L            +R   LP             AGA I+  I            + K
Sbjct: 436 VILL------------IRGVTLPG------------AGAGIWYFIT---------PKWEK 462

Query: 361 YNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQ 420
             +  +       I  ++++   G+                         +SSYNK++N 
Sbjct: 463 LTDATVWKDAATQIFFSLSAAWGGLIT-----------------------LSSYNKFHNN 499

Query: 421 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKL 480
              DT++V+  N+ TS+  G  IF  IG +  E + +IENV   GPG+ FVVYP+AL +L
Sbjct: 500 CYRDTLIVTCTNSATSIFAGFVIFSVIGFMANERKVNIENVADQGPGIAFVVYPEALTRL 559

Query: 481 PFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSF 540
           P   FWA++FF  LL L L++ FA +E +VTSI D FP++++ +     +  L  CI  F
Sbjct: 560 PLSPFWAIIFFLMLLTLGLDTMFATIETIVTSISDEFPKYLRTH---KPVFTLGCCICFF 616

Query: 541 FFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPS 600
             G P +TQGGIY FQL+D Y AS A++ +A FE+V ++++YG  +   ++  M G  P+
Sbjct: 617 IMGFPMITQGGIYMFQLVDTYAASYALVIIAIFELVGISYVYGLQRFCEDIEMMIGFKPN 676

Query: 601 LYFRFCWSIAAPLLI 615
           ++++ CW+   P ++
Sbjct: 677 IFWKVCWAFVTPTIL 691

Terminates the action of glycine by its high affinity sodium-dependent reuptake into presynaptic terminals. May be responsible for the termination of neurotransmission at strychnine-sensitive glycinergic synapses.

Mus musculus (taxid: 10090)

>sp|P58295|SC6A5_RAT Sodium- and chloride-dependent glycine transporter 2 OS=Rattus norvegicus GN=Slc6a5 PE=2 SV=1

 Score =  291 bits (746), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 181/555 (32%), Positives = 286/555 (51%), Gaps = 93/555 (16%)

Query: 61  VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
            FL+PY ++L L G+PI ++E+++GQF  +GP+ V  K  P  +G GI+ +IIS  ++ Y
Sbjct: 230 AFLIPYLMMLALAGLPIFFLEVSLGQFASQGPVSVW-KAIPALQGCGIAMLIISVLIAIY 288

Query: 121 YNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPS 180
           YNV+I Y+L+Y   SF S LPW  C N WNT  C        +D     LL  L   V  
Sbjct: 289 YNVIICYTLFYLFASFVSVLPWGSCNNPWNTPEC--------KD--KTKLL--LDSCVIG 336

Query: 181 KTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLW 240
             P  +  N     + C +   +++ V  T +  K         F+     Y        
Sbjct: 337 DHPKIQIKN----STFCMTAYPNLTMVNFTSQANK--------TFVSGSEEY-------- 376

Query: 241 RFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLI 300
            F + VL+IS+GI+  G+ RW L  C F++W++VY +L K +++SG+V+YFTAT P++++
Sbjct: 377 -FKYFVLKISAGIEYPGEIRWPLPFCLFLAWVIVYASLAKGIKTSGKVVYFTATFPYVVL 435

Query: 301 FVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNK 360
            + L            +R   LP             AGA I+  I            + K
Sbjct: 436 VILL------------IRGVTLPG------------AGAGIWYFIT---------PKWEK 462

Query: 361 YNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQ 420
             +  +       I  ++++   G+                         +SSYNK++N 
Sbjct: 463 LTDATVWKDAATQIFFSLSAAWGGLIT-----------------------LSSYNKFHNN 499

Query: 421 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKL 480
              DT++V+  N+ TS+  G  IF  IG +  E + +IENV   GPG+ FVVYP+AL +L
Sbjct: 500 CYRDTLIVTCTNSATSIFAGFVIFSVIGFMANERKVNIENVADQGPGIAFVVYPEALTRL 559

Query: 481 PFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSF 540
           P   FWA++FF  LL L L++ FA +E +VTSI D FP++++ +     +  L  CI  F
Sbjct: 560 PLSPFWAIIFFLMLLTLGLDTMFATIETIVTSISDEFPKYLRTH---KPVFTLGCCICFF 616

Query: 541 FFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPS 600
             G P +TQGGIY FQL+D Y AS A++ +A FE+V ++++YG  +   ++  M G  P+
Sbjct: 617 IMGFPMITQGGIYMFQLVDTYAASYALVIIAIFELVGISYVYGLQRFCEDIEMMIGFQPN 676

Query: 601 LYFRFCWSIAAPLLI 615
           ++++ CW+   P ++
Sbjct: 677 IFWKVCWAFVTPTIL 691

Terminates the action of glycine by its high affinity sodium-dependent reuptake into presynaptic terminals. May be responsible for the termination of neurotransmission at strychnine-sensitive glycinergic synapses.

Rattus norvegicus (taxid: 10116)

>sp|O35899|SC6A4_CAVPO Sodium-dependent serotonin transporter OS=Cavia porcellus GN=SLC6A4 PE=2 SV=1

 Score =  280 bits (717), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 173/557 (31%), Positives = 267/557 (47%), Gaps = 123/557 (22%)

Query: 61  VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
            FL+PY I+    GIP+ YMELA+GQ+ R G I +  K+CP FKG G +  II+F++++Y
Sbjct: 116 AFLLPYIIMAIFGGIPLFYMELALGQYHRNGCISIWRKICPIFKGIGYTICIIAFYIASY 175

Query: 121 YNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPS 180
           YN +IA++LYY  +SF  +LPW  C N WNT +C        ED        N++  + S
Sbjct: 176 YNTIIAWALYYLISSFTDRLPWTSCRNSWNTANC---TNYFSED--------NITWTLHS 224

Query: 181 KTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLW 240
            +P+EEFY                                  ++ IL             
Sbjct: 225 TSPAEEFY----------------------------------IRHILQ------------ 238

Query: 241 RFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLI 300
                 +  S G+  +G   W+L  C  + + ++YF++WK V++SG+V++ TAT P++++
Sbjct: 239 ------IHRSKGLQDVGGVSWQLTLCIMLIFTIIYFSIWKGVKTSGKVVWVTATFPYIVL 292

Query: 301 FVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNK 360
            V L    TL G+  G+ ++  PN++ L +  VW++A AQIF S+G  +G ++ F+SYNK
Sbjct: 293 SVLLVRGATLPGAWKGVLFYLKPNWQKLLETGVWIDAAAQIFFSLGPGFGVLLAFASYNK 352

Query: 361 YNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQ 420
           +NN    D +V S +N +TS + G  IF  +G +       +  V  D   S        
Sbjct: 353 FNNNCYQDALVTSAVNCMTSFVSGFVIFTVLGYMAEMRSEDVSEVAKDAGPS-------- 404

Query: 421 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKL 480
                                 +FIT                          Y +A+A +
Sbjct: 405 ---------------------LLFIT--------------------------YAEAIANM 417

Query: 481 PFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPR-WIKRYLVCHEIVVLVVCIVS 539
           P   F+A++FF  L+ L L+S FA +E V+T++ D FP  W K      E  VL V I  
Sbjct: 418 PASTFFAIIFFLMLITLGLDSTFAGLEGVITAVLDEFPHIWAKH----REWFVLAVVITC 473

Query: 540 FFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFP 599
           FF  L  +T GG Y  +L++ Y    AV+ V F E +AV+W YG  +   +V  M G  P
Sbjct: 474 FFGSLTTLTFGGAYVVKLLEEYATGPAVLTVVFIEAIAVSWFYGVTQFCSDVKEMLGFSP 533

Query: 600 SLYFRFCWSIAAPLLIL 616
             ++R CW   +P+ +L
Sbjct: 534 GWFWRICWVAVSPVFLL 550

Serotonin transporter whose primary function in the central nervous system involves the regulation of serotonergic signaling via transport of serotonin molecules from the synaptic cleft back into the pre-synaptic terminal for re-utilization. Plays a key role in mediating regulation of the availability of serotonin to other receptors of serotonergic systems. Terminates the action of serotonin and recycles it in a sodium-dependent manner.

Cavia porcellus (taxid: 10141)

>sp|Q9MZ34|SC6A6_BOVIN Sodium- and chloride-dependent taurine transporter OS=Bos taurus GN=SLC6A6 PE=2 SV=1

 Score =  280 bits (715), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 179/555 (32%), Positives = 273/555 (49%), Gaps = 118/555 (21%)

Query: 61  VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
            FL+PYFI LF  G+P+ ++E+ +GQ+T  G I    K+CP F G G +S++I   ++ Y
Sbjct: 78  AFLIPYFIFLFGGGLPVFFLEVIIGQYTSEGGITCWEKICPLFAGIGYASIVIVSLLNIY 137

Query: 121 YNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPS 180
           Y +++A+++YY   SF+S+LPW  C + WN                              
Sbjct: 138 YIIILAWAMYYLFQSFQSELPWAKCNHSWN------------------------------ 167

Query: 181 KTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLW 240
            TP    + + D +                   R R  W S      +   ++  +   W
Sbjct: 168 -TP----HCLEDTLR------------------RNRSLWISN-----STANFTSPVTEFW 199

Query: 241 RFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLI 300
               KVL +SSGID+ G  +W+L  C  + W++ +F +WK V+S+G+V+YFTAT PF ++
Sbjct: 200 E--RKVLSLSSGIDEPGALKWDLALCLLLVWLVCFFCIWKGVKSTGKVVYFTATFPFAML 257

Query: 301 FVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNK 360
            V L   LTL G+  G++++  P+   L D +VW++AG QI             F SY  
Sbjct: 258 LVLLVRGLTLPGAGAGIKFYLYPDISRLEDPQVWIDAGTQI-------------FFSYA- 303

Query: 361 YNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQ 420
                                       I +G +T               + SYNKY   
Sbjct: 304 ----------------------------ICLGAMTS--------------LGSYNKYKYN 321

Query: 421 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKL 480
              D M++  +N+ TS + G  IF  +G +  E    I +V   GPGL F+ YP+A+  +
Sbjct: 322 SYRDCMLLGCLNSGTSFVSGFAIFSILGFMAQEQGVDIADVAESGPGLAFIAYPKAVTMM 381

Query: 481 PFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSF 540
           P P FW++LFF  LL L L+SQF  VE  +TS+ D  P  +++     EI +  +C V++
Sbjct: 382 PLPTFWSILFFIMLLLLGLDSQFVEVEGQITSLVDLHPSLLRKGFH-REIFIASICCVTY 440

Query: 541 FFGLPYVTQGGIYFFQLIDHYTAS-TAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFP 599
             GL  VT+GG+Y FQL D+Y AS   +++VAFFE  A+AWIYGSD     +  M G  P
Sbjct: 441 LLGLTMVTEGGMYVFQLFDYYAASGVCLLWVAFFECFAIAWIYGSDNFYDGIEDMIGYRP 500

Query: 600 SLYFRFCWSIAAPLL 614
             + ++CW++  PLL
Sbjct: 501 GPWMKYCWAVVTPLL 515

Required for the uptake of taurine.

Bos taurus (taxid: 9913)

>sp|Q91502|SC6A8_TORMA Creatine transporter OS=Torpedo marmorata PE=2 SV=1

 Score =  277 bits (708), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 173/558 (31%), Positives = 282/558 (50%), Gaps = 123/558 (22%)

Query: 61  VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
           VFL+PY ++    GIPI ++E+++GQF + G I   + + P FKG G +S++I FF +TY
Sbjct: 73  VFLIPYLLVAVFGGIPIFFLEISLGQFMKAGGINAWN-IAPLFKGLGYASMVIVFFCNTY 131

Query: 121 YNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPS 180
           Y +++ +S +Y                                      L+Q+ S P+P 
Sbjct: 132 YILVLTWSSFY--------------------------------------LVQSFSSPLP- 152

Query: 181 KTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLW 240
                 + + ++  +T + Y ++ ++  +   P      +S VQF               
Sbjct: 153 ------WASCNNTWNTAACY-EAGANASTEIYPPTAPAQSSIVQF--------------- 190

Query: 241 RFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLI 300
            +  +VL++SSG+  +G+  WEL  C   +W+LVYF +WK V++SG+V+Y TAT P++++
Sbjct: 191 -WERRVLRLSSGLGDVGEIGWELTLCLTATWMLVYFCIWKGVKTSGKVVYVTATFPYIIL 249

Query: 301 FVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNK 360
            + L   +TL G+  G+ Y+  P++  L + +VW++AG QIF S  I             
Sbjct: 250 VILLVRGVTLHGAVQGIVYYLQPDWGKLGEAQVWIDAGTQIFFSYAIG------------ 297

Query: 361 YNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQ 420
                         + T+T+                              + SYN+ +N 
Sbjct: 298 --------------LGTLTA------------------------------LGSYNQLHND 313

Query: 421 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKL 480
              D  ++S++N+ TS   G+ +F  +G +  E    I  V   GPGL F+ YP+A+  +
Sbjct: 314 CYKDAFILSLVNSATSFFAGLVVFSILGFMAVEEGVDISVVAESGPGLAFIAYPKAVTLM 373

Query: 481 PFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFP-RWIKRYLVCHEIVVLVVCIVS 539
           PFP  WAVLFF  LLCL L SQF  VE  VT+I D +P ++  RYL   E+VV +V  +S
Sbjct: 374 PFPQVWAVLFFIMLLCLGLGSQFVGVEGFVTAILDLWPSKFSFRYL--REVVVAMVICLS 431

Query: 540 FFFGLPYVTQGGIYFFQLIDHYTAS-TAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKF 598
           F   L  +T+GG+Y FQ+ D+Y+AS T +++ AF+E VAVAW+YG D+   ++  M G  
Sbjct: 432 FLIDLSMITEGGMYIFQIFDYYSASGTTLLWTAFWECVAVAWVYGGDRYLDDLAWMLGYR 491

Query: 599 PSLYFRFCWSIAAPLLIL 616
           P    ++CWS+  PL+ +
Sbjct: 492 PWALVKWCWSVITPLVCM 509

Required for the uptake of creatine.

Torpedo marmorata (taxid: 7788)

>sp|P31643|SC6A6_RAT Sodium- and chloride-dependent taurine transporter OS=Rattus norvegicus GN=Slc6a6 PE=2 SV=1

 Score =  277 bits (708), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 178/555 (32%), Positives = 268/555 (48%), Gaps = 118/555 (21%)

Query: 61  VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
            FL+PYFI LF  G+P+ ++E+ +GQ+T  G I    K+CP F G G +S++I   ++ Y
Sbjct: 78  AFLIPYFIFLFGSGLPVFFLEVIIGQYTSEGGITCWEKICPLFSGIGYASIVIVSLLNVY 137

Query: 121 YNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPS 180
           Y V++A++ YY   SF+  LPW HC + W                               
Sbjct: 138 YIVILAWATYYLFQSFQKDLPWAHCNHSW------------------------------- 166

Query: 181 KTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLW 240
                         +T     D++         R   HW S     L+   ++  +   W
Sbjct: 167 --------------NTPQCMEDTLR--------RNESHWVS-----LSAANFTSPVIEFW 199

Query: 241 RFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLI 300
                VL +SSGID  G  +W+L  C  + W++ +F +WK VRS+G+V+YFTAT PF ++
Sbjct: 200 E--RNVLSLSSGIDHPGSLKWDLALCLLLVWLVCFFCIWKGVRSTGKVVYFTATFPFAML 257

Query: 301 FVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNK 360
            V L   LTL G+  G++++  PN   L D +VW++AG QI             F SY  
Sbjct: 258 LVLLVRGLTLPGAGEGIKFYLYPNISRLEDPQVWIDAGTQI-------------FFSYA- 303

Query: 361 YNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQ 420
                                       I +G +T               + SYNKY   
Sbjct: 304 ----------------------------ICLGAMTS--------------LGSYNKYKYN 321

Query: 421 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKL 480
              D M++  +N+ TS + G  IF  +G +  E    I +V   GPGL F+ YP+A+  +
Sbjct: 322 SYRDCMLLGCLNSGTSFVSGFAIFSILGFMAQEQGVDIADVAESGPGLAFIAYPKAVTMM 381

Query: 481 PFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSF 540
           P P FW++LFF  LL L L+SQF  VE  +TS+ D +P ++++     EI + +VC +S+
Sbjct: 382 PLPTFWSILFFIMLLLLGLDSQFVEVEGQITSLVDLYPSFLRKGYR-REIFIAIVCSISY 440

Query: 541 FFGLPYVTQGGIYFFQLIDHYTAS-TAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFP 599
             GL  VT+GG+Y FQL D+Y AS   +++VAFFE   +AWIYG D L   +  M G  P
Sbjct: 441 LLGLTMVTEGGMYVFQLFDYYAASGVCLLWVAFFECFVIAWIYGGDNLYDGIEDMIGYRP 500

Query: 600 SLYFRFCWSIAAPLL 614
             + ++ W++  P L
Sbjct: 501 GPWMKYSWAVITPAL 515

Required for the uptake of taurine. Transports both taurine and beta-alanine which requires sodium ions. Chloride ions are necessary for optimal uptake.

Rattus norvegicus (taxid: 10116)

>sp|O35316|SC6A6_MOUSE Sodium- and chloride-dependent taurine transporter OS=Mus musculus GN=Slc6a6 PE=1 SV=2

 Score =  273 bits (698), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 176/555 (31%), Positives = 268/555 (48%), Gaps = 118/555 (21%)

Query: 61  VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
            FL+PYFI LF  G+P+ ++E+ +GQ+T  G I    K+CP F G G +S++I   ++ Y
Sbjct: 78  AFLIPYFIFLFGSGLPVFFLEVIIGQYTSEGGITCWEKICPLFSGIGYASIVIVSLLNVY 137

Query: 121 YNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPS 180
           Y V++A++ YY   SF+  LPW HC + W                               
Sbjct: 138 YIVILAWATYYLFHSFQKDLPWAHCNHSW------------------------------- 166

Query: 181 KTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLW 240
                         +T     D++         R   HW S     L+   ++  +   W
Sbjct: 167 --------------NTPQCMEDTLR--------RNESHWVS-----LSTANFTSPVIEFW 199

Query: 241 RFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLI 300
                VL +SSGID  G  +W+L  C  + W++ +F +WK VRS+G+V+YFTAT PF ++
Sbjct: 200 E--RNVLSLSSGIDNPGSLKWDLALCLLLVWLVCFFCIWKGVRSTGKVVYFTATFPFAML 257

Query: 301 FVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNK 360
            V L   LTL G+  G++++  P+   L D +VW++AG QI             F SY  
Sbjct: 258 LVLLVRGLTLPGAGEGIKFYLYPDISRLGDPQVWIDAGTQI-------------FFSYA- 303

Query: 361 YNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQ 420
                                       I +G +T               + SYNKY   
Sbjct: 304 ----------------------------ICLGAMTS--------------LGSYNKYKYN 321

Query: 421 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKL 480
              D M++  +N+ TS + G  IF  +G +  E    I +V   GPGL F+ YP+A+  +
Sbjct: 322 SYRDCMLLGCLNSGTSFVSGFAIFSILGFMAQEQGVDIADVAESGPGLAFIAYPKAVTMM 381

Query: 481 PFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSF 540
           P P FW++LFF  LL L L+SQF  VE  +TS+ D +P ++++     EI + ++C +S+
Sbjct: 382 PLPTFWSILFFIMLLLLGLDSQFVEVEGQITSLVDLYPSFLRKGYR-REIFIAILCSISY 440

Query: 541 FFGLPYVTQGGIYFFQLIDHYTAS-TAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFP 599
             GL  VT+GG+Y FQL D+Y AS   +++VAFFE   +AWIYG D L   +  M G  P
Sbjct: 441 LLGLTMVTEGGMYVFQLFDYYAASGVCLLWVAFFECFVIAWIYGGDNLYDGIEDMIGYRP 500

Query: 600 SLYFRFCWSIAAPLL 614
             + ++ W++  P L
Sbjct: 501 GPWMKYSWAVITPAL 515

Required for the uptake of taurine. Transports both taurine and beta-alanine which requires sodium ions. Chloride ions are necessary for optimal uptake.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	631
195342488	943	GM18085 [Drosophila sechellia] gi|194132	0.689	0.461	0.466	1e-140
195159926	886	GL16025 [Drosophila persimilis] gi|19847	0.689	0.490	0.464	1e-140
17136952	658	inebriated, isoform A [Drosophila melano	0.765	0.734	0.434	1e-139
6649944	727	inebriated protein [Manduca sexta]	0.686	0.595	0.460	1e-137
242003666	518	tryptophan transporter, putative [Pedicu	0.690	0.841	0.418	1e-113
195052563	997	GH13744 [Drosophila grimshawi] gi|193900	0.543	0.344	0.468	1e-103
195471293	944	GE14708 [Drosophila yakuba] gi|194174040	0.503	0.336	0.494	1e-102
194856144	944	GG24369 [Drosophila erecta] gi|190660553	0.503	0.336	0.494	1e-102
195433144	958	GK23923 [Drosophila willistoni] gi|19416	0.503	0.331	0.491	1e-102
17136950	943	inebriated, isoform B [Drosophila melano	0.503	0.337	0.491	1e-102

>gi|195342488|ref|XP_002037832.1| GM18085 [Drosophila sechellia] gi|194132682|gb|EDW54250.1| GM18085 [Drosophila sechellia]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 259/555 (46%), Positives = 339/555 (61%), Gaps = 120/555 (21%)

Query: 61  VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
           VFLVPY IILF+C IP+L+MEL+VGQ+T RGPIG L +LCP FKGAG++SV++SF MSTY
Sbjct: 374 VFLVPYCIILFICSIPLLFMELSVGQYTGRGPIGALGQLCPLFKGAGLASVVVSFLMSTY 433

Query: 121 YNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPS 180
           Y+V+I YS+YYF TSF++++PW  C NRWNT  CWVP     +  G      N S P  S
Sbjct: 434 YSVIIGYSIYYFFTSFKTEMPWIDCNNRWNTPDCWVP-----QRKGI-----NASAPDTS 483

Query: 181 KTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLW 240
           +TP       S+E                                               
Sbjct: 484 RTP-------SEEF---------------------------------------------- 490

Query: 241 RFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLI 300
            F +KVLQIS G++  G  RWEL AC   +W++VYFA WKS++SS +V YFTAT PF+LI
Sbjct: 491 -FENKVLQISGGLEYPGMMRWELFACLICAWLMVYFATWKSIKSSAKVRYFTATFPFVLI 549

Query: 301 FVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNK 360
            + +  ++TLDG+  GLR+FF P +  L +  VW+NA +Q FNS+G      ITF S   
Sbjct: 550 IILMVRAVTLDGAAEGLRFFFRPKWSELKNANVWINAASQNFNSLG------ITFGSMIS 603

Query: 361 YNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQ 420
           +                                                  +SYNKYNN 
Sbjct: 604 F--------------------------------------------------ASYNKYNNN 613

Query: 421 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKL 480
           I+ DT+ VS +N ITS+L+G+F F T+GN+  E  T++ +VI DGPG+IFVVYPQA+AK+
Sbjct: 614 ILRDTVAVSAVNMITSLLVGIFAFSTLGNLALEQNTNVRDVIGDGPGMIFVVYPQAMAKM 673

Query: 481 PFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSF 540
           P+   WAV+FFF LLCL LNSQFA+VEVVVTSIQDGFPRWIKR+L  HEIVVL VC++S 
Sbjct: 674 PYAQLWAVMFFFMLLCLGLNSQFAIVEVVVTSIQDGFPRWIKRHLGYHEIVVLFVCVISC 733

Query: 541 FFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPS 600
            FG+P + QGGIY+FQL+DHY AS  +M++AF +++A+AW YG+ +L++NV  MTGK PS
Sbjct: 734 LFGMPNIIQGGIYYFQLMDHYAASVTIMFLAFCQMIAIAWFYGTGRLSKNVKQMTGKAPS 793

Query: 601 LYFRFCWSIAAPLLI 615
            Y R CW +  P L+
Sbjct: 794 FYLRSCWLVLGPCLL 808

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195159926|ref|XP_002020827.1| GL16025 [Drosophila persimilis] gi|198475575|ref|XP_001357079.2| GA13735 [Drosophila pseudoobscura pseudoobscura] gi|194117777|gb|EDW39820.1| GL16025 [Drosophila persimilis] gi|198138884|gb|EAL34145.2| GA13735 [Drosophila pseudoobscura pseudoobscura]

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 258/555 (46%), Positives = 340/555 (61%), Gaps = 120/555 (21%)

Query: 61  VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
           VFLVPY IILF+C IP+L+MEL+VGQ+T RGPIG L +LCP FKGAG++SV++SF MSTY
Sbjct: 297 VFLVPYCIILFICSIPLLFMELSVGQYTGRGPIGALGQLCPLFKGAGLASVVVSFLMSTY 356

Query: 121 YNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPS 180
           Y+V+I YS+YYF TSF++++PW  C NRWNT  CWVP     +++       N S P  S
Sbjct: 357 YSVIIGYSIYYFFTSFKTEMPWIDCNNRWNTPDCWVPQR---KEI-------NASAPDTS 406

Query: 181 KTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLW 240
           +TP       S+E                                               
Sbjct: 407 RTP-------SEEF---------------------------------------------- 413

Query: 241 RFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLI 300
            F +KVLQIS G++  G  RWEL AC   +W++VYFA WKS++SS +V YFTAT PF+LI
Sbjct: 414 -FENKVLQISGGLEYPGMMRWELFACLICAWLMVYFATWKSIKSSAKVRYFTATFPFVLI 472

Query: 301 FVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNK 360
            + +  ++TLDG+  GLR+FF P +  L +  VW+NA +Q FNS+G      ITF S   
Sbjct: 473 IILMVRAVTLDGAAEGLRFFFRPKWSELKNANVWINAASQNFNSLG------ITFGSMIS 526

Query: 361 YNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQ 420
           +                                                  +SYNKYNN 
Sbjct: 527 F--------------------------------------------------ASYNKYNNN 536

Query: 421 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKL 480
           I+ DT+ VS +N ITS+L+G+F F T+GN+  E  T++ +VI DGPG+IFVVYPQA+AK+
Sbjct: 537 ILRDTIAVSAVNMITSLLVGIFAFSTLGNLALEQNTNVRDVIGDGPGMIFVVYPQAMAKM 596

Query: 481 PFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSF 540
           P+   WAV+FFF LLCL LNSQFA+VEVVVTSIQDGFPRWIKR+L  HEIVVL VC++S 
Sbjct: 597 PYAQLWAVMFFFMLLCLGLNSQFAIVEVVVTSIQDGFPRWIKRHLGYHEIVVLFVCVISC 656

Query: 541 FFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPS 600
            FG+P + QGGIY+FQL+DHY AS  +M++AF +++A+AW YG+ +L++NV  MTGK PS
Sbjct: 657 LFGMPNIIQGGIYYFQLMDHYAASVTIMFLAFCQMIAIAWFYGTGRLSKNVKQMTGKAPS 716

Query: 601 LYFRFCWSIAAPLLI 615
            Y R CW +  P L+
Sbjct: 717 FYLRSCWLVLGPCLL 731

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17136952|ref|NP_477013.1| inebriated, isoform A [Drosophila melanogaster] gi|1575565|gb|AAC47292.1| inebriated [Drosophila melanogaster] gi|22945236|gb|AAN10349.1| inebriated, isoform A [Drosophila melanogaster] gi|259089548|gb|ACV91630.1| LP16156p [Drosophila melanogaster]

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 267/615 (43%), Positives = 358/615 (58%), Gaps = 132/615 (21%)

Query: 13  PIGESKLGVHFLVSPNCAPLQTKVSDWTSSFKIEVPLQYCTSIVGNI------------R 60
           P+G      +  +S   A L+ +   W +  +  +     +  +GN+             
Sbjct: 29  PLGVDDDDSYLDMSDETAQLKPRQQHWANKMQFVLACIGYSVGLGNVWRFPYMCYKSGGG 88

Query: 61  VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
           VFLVPY IILF+C IP+L+MEL+VGQ+T RGPIG L +LCP FKGAG++SV++SF MSTY
Sbjct: 89  VFLVPYCIILFICSIPLLFMELSVGQYTGRGPIGALGQLCPLFKGAGLASVVVSFLMSTY 148

Query: 121 YNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPS 180
           Y+V+I YS+YYF TSF++++PW  C NRWNT  CWVP     +  G      N S P  S
Sbjct: 149 YSVIIGYSIYYFFTSFKTEMPWIDCNNRWNTPDCWVP-----QRKGI-----NASAPDTS 198

Query: 181 KTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLW 240
           +TP       S+E                                               
Sbjct: 199 RTP-------SEEF---------------------------------------------- 205

Query: 241 RFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLI 300
            F +KVLQIS G++  G  RWEL AC   +W++VYFA WKS++SS +V YFTAT PF+LI
Sbjct: 206 -FENKVLQISGGLEYPGMMRWELFACLICAWLMVYFATWKSIKSSAKVRYFTATFPFVLI 264

Query: 301 FVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNK 360
            + +  ++TLDG+  GLR+FF P +  L +  VW+NA +Q FNS+G      ITF S   
Sbjct: 265 IILMVRAVTLDGAAEGLRFFFRPKWSELKNANVWINAASQNFNSLG------ITFGSMIS 318

Query: 361 YNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQ 420
           +                                                  +SYNKYNN 
Sbjct: 319 F--------------------------------------------------ASYNKYNNN 328

Query: 421 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKL 480
           I+ DT+ VS +N ITS+L+G+F F T+GN+  E  T++ +VI DGPG+IFVVYPQA+AK+
Sbjct: 329 ILRDTVAVSAVNMITSLLVGIFAFSTLGNLALEQNTNVRDVIGDGPGMIFVVYPQAMAKM 388

Query: 481 PFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSF 540
           P+   WAV+FFF LLCL LNSQFA+VEVVVTSIQDGFPRWIKR+L  HEIVVL VC++S 
Sbjct: 389 PYAQLWAVMFFFMLLCLGLNSQFAIVEVVVTSIQDGFPRWIKRHLGYHEIVVLFVCVISC 448

Query: 541 FFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPS 600
            FG+P + QGGIY+FQL+DHY AS  +M++AF +++A+AW YG+ +L++NV  MTGK PS
Sbjct: 449 LFGMPNIIQGGIYYFQLMDHYAASVTIMFLAFCQMIAIAWFYGTGRLSKNVKQMTGKAPS 508

Query: 601 LYFRFCWSIAAPLLI 615
            Y R CW +  P L+
Sbjct: 509 FYLRSCWLVLGPCLL 523

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|6649944|gb|AAF21642.1|AF032873_1 inebriated protein [Manduca sexta]

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 256/556 (46%), Positives = 338/556 (60%), Gaps = 123/556 (22%)

Query: 61  VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
            FL+PYFIIL +CG+P+L+MELA+GQ+T  GPIG LS++CP FKGAG++SV+ISF MSTY
Sbjct: 202 AFLIPYFIILLICGVPMLFMELAIGQYTAHGPIGALSQICPLFKGAGLASVVISFLMSTY 261

Query: 121 YNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPS 180
           Y V+IA+++YYF TSF++++PW  C NRWNT  CWVP               N +KP  S
Sbjct: 262 YAVIIAWAIYYFFTSFKTEVPWASCSNRWNTDQCWVPN-------------HNHTKPNGS 308

Query: 181 KTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLW 240
           +TP+E                                      QF               
Sbjct: 309 QTPTE--------------------------------------QF--------------- 315

Query: 241 RFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLI 300
            F  KVL +S+GI+  G  RWEL AC   +W+LVYFALWKS++SS +V Y T T+PFLLI
Sbjct: 316 -FERKVLNMSAGIEYPGGMRWELAACLVCAWVLVYFALWKSIKSSAKVRYITTTLPFLLI 374

Query: 301 FVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNK 360
            VFL  SLTLDG++ GLR+FF P++ELL   + WVNA +Q                    
Sbjct: 375 IVFLGRSLTLDGADGGLRFFFKPDWELLKQSRPWVNAASQ-------------------- 414

Query: 361 YNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQ 420
                        I N+I      + +F                       +SYN+++N 
Sbjct: 415 -------------IFNSIGIAFGSMIMF-----------------------ASYNRFDNN 438

Query: 421 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKL 480
            + DT+ V+++N ITS+++G+F F TIGNI +E  T +++VI D PGL+FVVYPQA+AK+
Sbjct: 439 FLHDTVAVTLVNAITSLIVGIFTFATIGNIAFEQNTPVKDVIADSPGLLFVVYPQAIAKM 498

Query: 481 PFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSF 540
           P    WAVLFFF  LCL LNSQFA+VEVVVTSIQDGFP  I++ LV HE++VL+VC VS 
Sbjct: 499 PASQLWAVLFFFMFLCLGLNSQFAIVEVVVTSIQDGFPDMIRKRLVYHELLVLLVCAVSL 558

Query: 541 FFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPS 600
             GLP++   GIY FQL+D+Y AS ++ Y+AFFEVVA+AW YG  +L+RN+  MTG+ PS
Sbjct: 559 LCGLPHIIHSGIYVFQLMDYYAASLSITYLAFFEVVAIAWFYGVGRLSRNIKQMTGRQPS 618

Query: 601 LYFRFCWSIAAPLLIL 616
           LYFRFCW IA+P L+L
Sbjct: 619 LYFRFCWLIASPALLL 634

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242003666|ref|XP_002422819.1| tryptophan transporter, putative [Pediculus humanus corporis] gi|212505677|gb|EEB10081.1| tryptophan transporter, putative [Pediculus humanus corporis]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/555 (41%), Positives = 314/555 (56%), Gaps = 119/555 (21%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
           FLVPY + LF+CGIP+LYMEL +GQ T+RGPIG L KLCP  KGAG+SSV+ISF MSTY 
Sbjct: 42  FLVPYVLALFVCGIPLLYMELMIGQLTKRGPIGALGKLCPLLKGAGLSSVVISFIMSTYC 101

Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSK 181
           NV+IAY++YY  TS  S+LPW HC N WNT +CW+P         ++ L QN++KP  S+
Sbjct: 102 NVIIAYTIYYLFTSLNSKLPWHHCDNPWNTINCWMP---------SLRLEQNITKPNMSR 152

Query: 182 TPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWR 241
           TPS+EFY+            + +  + S  +   +  W                      
Sbjct: 153 TPSQEFYD------------NKVLQITSGLEILGKFRW---------------------- 178

Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF 301
                               ELVAC  V+WILVYF++WKS++SSG+V+Y TAT+P++LI 
Sbjct: 179 --------------------ELVACLIVAWILVYFSIWKSIKSSGKVIYITATLPYVLIL 218

Query: 302 VFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKY 361
            FL  S+TL+G+++GL Y F P +ELL D KVWVNA  Q+FNSIG+A+G++I+FSSY K 
Sbjct: 219 AFLVRSVTLEGADVGLSYLFNPQWELLGDAKVWVNAAGQVFNSIGLAFGSIISFSSYKKP 278

Query: 362 NNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQI 421
           N++I++DT+ VS IN  TS+L+G+F F  IGNI  EH TS+ +VI DG    +  Y    
Sbjct: 279 NDRILIDTITVSCINAGTSLLVGIFAFAIIGNIATEHRTSVHDVITDGPGLVFVVYP--- 335

Query: 422 IVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLP 481
             + M     + + ++L    +F    N  +     +   I DG                
Sbjct: 336 --EAMAKMPASQLWAILFFTMLFCVGLNSQFAIVEVVVTAIQDG---------------- 377

Query: 482 FPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFF 541
           FPN+             +   F   EV+V                      L VC VSF 
Sbjct: 378 FPNW-------------IRRNFGGHEVLV----------------------LAVCFVSFV 402

Query: 542 FGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSL 601
            GLP V QGGI+FFQLIDHY AS ++MY++FFE++A AW YG  +L  N+  MTG+ PSL
Sbjct: 403 LGLPNVFQGGIFFFQLIDHYAASISIMYLSFFELIAFAWFYGYRRLKNNLKEMTGETPSL 462

Query: 602 YFRFCWSIAAPLLIL 616
           YF+FCW IAAP  ++
Sbjct: 463 YFKFCWCIAAPAFLM 477

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195052563|ref|XP_001993323.1| GH13744 [Drosophila grimshawi] gi|193900382|gb|EDV99248.1| GH13744 [Drosophila grimshawi]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/399 (46%), Positives = 256/399 (64%), Gaps = 56/399 (14%)

Query: 217 DHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYF 276
           D W  + + +     +S    +   F +KVL+IS+G++  G  RWEL AC   +W++VYF
Sbjct: 501 DCWVPQRKELNTTAPHSSRTPSEEFFENKVLKISAGLEHPGMMRWELFACLVCAWLMVYF 560

Query: 277 ALWKSVRSSGRVLYFTATIPFLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVN 336
           A WKS++SS +V YFTAT PF+LI + +  ++TLDG++ GLR+FF PN+  L +  VW+N
Sbjct: 561 ATWKSIKSSAKVRYFTATFPFVLIIILMFRAITLDGADEGLRFFFRPNWSELKNANVWIN 620

Query: 337 AGAQIFNSIGIAYGAVITFSSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITY 396
           A +Q FNS+G      ITF S   +                                   
Sbjct: 621 AASQNFNSLG------ITFGSMISF----------------------------------- 639

Query: 397 EHETSIENVILDGFISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHET 456
                          +SYNKYNN I+ DT+ VS++N +TS+L+G+F F T+GN+  E  T
Sbjct: 640 ---------------ASYNKYNNNILRDTVAVSLVNIVTSLLVGIFAFSTLGNLALEQNT 684

Query: 457 SIENVILDGPGLIFVVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDG 516
           ++ +VI DGPG+IFVVYPQA+AK+P+   WAV+FFF LLCL LNSQFA+VEVVVTSIQDG
Sbjct: 685 NVRDVIGDGPGMIFVVYPQAMAKMPYAQLWAVMFFFMLLCLGLNSQFAIVEVVVTSIQDG 744

Query: 517 FPRWIKRYLVCHEIVVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVV 576
           FPRWIKR L  HEIVVL VC++S  FGLP + QGGIY+FQL+DHY AS  +M++AF +++
Sbjct: 745 FPRWIKRNLGYHEIVVLFVCVISCLFGLPNIIQGGIYYFQLMDHYAASVTIMFLAFCQMI 804

Query: 577 AVAWIYGSDKLARNVHHMTGKFPSLYFRFCWSIAAPLLI 615
           A+AW YG+ +L++NV  MTGK PS YF+ CW +  P L+
Sbjct: 805 AIAWFYGTGRLSKNVKQMTGKVPSFYFKSCWLVLGPCLL 843

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195471293|ref|XP_002087939.1| GE14708 [Drosophila yakuba] gi|194174040|gb|EDW87651.1| GE14708 [Drosophila yakuba]

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/374 (49%), Positives = 245/374 (65%), Gaps = 56/374 (14%)

Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF 301
           F +KVLQIS G++  G  RWEL AC   +W++VYFA WKS++SS +V YFTAT PF+LI 
Sbjct: 492 FENKVLQISGGLEYPGMMRWELFACLICAWLMVYFATWKSIKSSAKVRYFTATFPFVLII 551

Query: 302 VFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKY 361
           + +  ++TLDG+  GLR+FF P +  L +  VW+NA +Q FNS+G      ITF S   +
Sbjct: 552 ILMARAVTLDGAAEGLRFFFRPKWSELKNANVWINAASQNFNSLG------ITFGSMISF 605

Query: 362 NNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQI 421
                                                             +SYNKYNN I
Sbjct: 606 --------------------------------------------------ASYNKYNNNI 615

Query: 422 IVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLP 481
           + DT+ VS +N ITS+L+G+F F T+GN+  E  T++ +VI DGPG+IFVVYPQA+AK+P
Sbjct: 616 LRDTVAVSAVNMITSLLVGIFAFSTLGNLALEQNTNVRDVIGDGPGMIFVVYPQAMAKMP 675

Query: 482 FPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFF 541
           +   WAV+FFF LLCL LNSQFA+VEVVVTSIQDGFPRWIKR+L  HEIVVL VC++S  
Sbjct: 676 YAQLWAVMFFFMLLCLGLNSQFAIVEVVVTSIQDGFPRWIKRHLGYHEIVVLFVCVISCL 735

Query: 542 FGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSL 601
           FG+P + QGGIY+FQL+DHY AS  +M++AF +++A+AW YG+ +L++NV  MTGK PS 
Sbjct: 736 FGMPNIIQGGIYYFQLMDHYAASVTIMFLAFCQMIAIAWFYGTGRLSKNVKQMTGKAPSF 795

Query: 602 YFRFCWSIAAPLLI 615
           YFR CW +  P L+
Sbjct: 796 YFRSCWLVLGPCLL 809

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194856144|ref|XP_001968686.1| GG24369 [Drosophila erecta] gi|190660553|gb|EDV57745.1| GG24369 [Drosophila erecta]

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/374 (49%), Positives = 245/374 (65%), Gaps = 56/374 (14%)

Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF 301
           F +KVLQIS G++  G  RWEL AC   +W++VYFA WKS++SS +V YFTAT PF+LI 
Sbjct: 493 FENKVLQISGGLEYPGMMRWELFACLICAWLMVYFATWKSIKSSAKVRYFTATFPFVLII 552

Query: 302 VFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKY 361
           + +  ++TLDG+  GLR+FF P +  L +  VW+NA +Q FNS+G      ITF S   +
Sbjct: 553 ILMVRAVTLDGAAEGLRFFFRPKWSELKNANVWINAASQNFNSLG------ITFGSMISF 606

Query: 362 NNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQI 421
                                                             +SYNKYNN I
Sbjct: 607 --------------------------------------------------ASYNKYNNNI 616

Query: 422 IVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLP 481
           + DT+ VS +N ITS+L+G+F F T+GN+  E  T++ +VI DGPG+IFVVYPQA+AK+P
Sbjct: 617 LRDTVAVSAVNMITSLLVGIFAFSTLGNLALEQNTNVRDVIGDGPGMIFVVYPQAMAKMP 676

Query: 482 FPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFF 541
           +   WAV+FFF LLCL LNSQFA+VEVVVTSIQDGFPRWIKR+L  HEIVVL VC++S  
Sbjct: 677 YAQLWAVMFFFMLLCLGLNSQFAIVEVVVTSIQDGFPRWIKRHLGYHEIVVLFVCVISCL 736

Query: 542 FGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSL 601
           FG+P + QGGIY+FQL+DHY AS  +M++AF +++A+AW YG+ +L++NV  MTGK PS 
Sbjct: 737 FGMPNIIQGGIYYFQLMDHYAASVTIMFLAFCQMIAIAWFYGTGRLSKNVKQMTGKAPSF 796

Query: 602 YFRFCWSIAAPLLI 615
           YFR CW +  P L+
Sbjct: 797 YFRSCWLVLGPCLL 810

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195433144|ref|XP_002064575.1| GK23923 [Drosophila willistoni] gi|194160660|gb|EDW75561.1| GK23923 [Drosophila willistoni]

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/374 (49%), Positives = 247/374 (66%), Gaps = 56/374 (14%)

Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF 301
           F +KVLQISSG++  G  RWEL AC   +W++VYFA WKS++SS +V YFTAT PF+LI 
Sbjct: 491 FENKVLQISSGLEYPGMMRWELFACLICAWLMVYFATWKSIKSSAKVRYFTATFPFVLII 550

Query: 302 VFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKY 361
           + +  ++TLDG+  GLR+FF P +  L +  VW+NA +Q FNS+G      ITF S   +
Sbjct: 551 ILMGRAVTLDGAAEGLRFFFRPKWSELKNANVWINAASQNFNSLG------ITFGSMISF 604

Query: 362 NNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQI 421
                                                             +SYNKYNN I
Sbjct: 605 --------------------------------------------------ASYNKYNNNI 614

Query: 422 IVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLP 481
           + DT+ VS++N +TS+L+G+F F T+GN+  E  T++ +VI DGPG+IFVVYPQA+AK+P
Sbjct: 615 LRDTVAVSMVNMLTSLLVGIFAFSTLGNLALEQNTNVGDVIGDGPGMIFVVYPQAMAKMP 674

Query: 482 FPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFF 541
           +   WAV+FFF LLCL LNSQFA+VEVVVTSIQDGFPRWIKR+L  HEIVVL VC++S  
Sbjct: 675 YAQLWAVMFFFMLLCLGLNSQFAIVEVVVTSIQDGFPRWIKRHLGYHEIVVLFVCVISCL 734

Query: 542 FGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSL 601
           FG+P + QGGIY+FQL+DHY AS  +M++AF +++A+AW YG+ +L++NV  MTGK PSL
Sbjct: 735 FGMPNIIQGGIYYFQLMDHYAASVTIMFLAFCQMIAIAWFYGTGRLSKNVKQMTGKAPSL 794

Query: 602 YFRFCWSIAAPLLI 615
           Y + CW +  P L+
Sbjct: 795 YLKSCWLVLGPCLL 808

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17136950|ref|NP_477012.1| inebriated, isoform B [Drosophila melanogaster] gi|28574702|ref|NP_787972.1| inebriated, isoform C [Drosophila melanogaster] gi|28574704|ref|NP_787973.1| inebriated, isoform E [Drosophila melanogaster] gi|281364394|ref|NP_001162871.1| inebriated, isoform F [Drosophila melanogaster] gi|74948405|sp|Q9VR07.1|INE_DROME RecName: Full=Sodium- and chloride-dependent GABA transporter ine; AltName: Full=Protein inebriated; AltName: Full=Protein receptor oscillation A gi|7295696|gb|AAF51001.1| inebriated, isoform B [Drosophila melanogaster] gi|21711669|gb|AAM75025.1| HL05815p [Drosophila melanogaster] gi|28380264|gb|AAO41159.1| inebriated, isoform C [Drosophila melanogaster] gi|28380265|gb|AAO41160.1| inebriated, isoform E [Drosophila melanogaster] gi|33589314|gb|AAQ22424.1| RH37701p [Drosophila melanogaster] gi|220943542|gb|ACL84314.1| ine-PB [synthetic construct] gi|272406890|gb|ACZ94162.1| inebriated, isoform F [Drosophila melanogaster]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/374 (49%), Positives = 244/374 (65%), Gaps = 56/374 (14%)

Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF 301
           F +KVLQIS G++  G  RWEL AC   +W++VYFA WKS++SS +V YFTAT PF+LI 
Sbjct: 491 FENKVLQISGGLEYPGMMRWELFACLICAWLMVYFATWKSIKSSAKVRYFTATFPFVLII 550

Query: 302 VFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKY 361
           + +  ++TLDG+  GLR+FF P +  L +  VW+NA +Q FNS+G      ITF S   +
Sbjct: 551 ILMVRAVTLDGAAEGLRFFFRPKWSELKNANVWINAASQNFNSLG------ITFGSMISF 604

Query: 362 NNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQI 421
                                                             +SYNKYNN I
Sbjct: 605 --------------------------------------------------ASYNKYNNNI 614

Query: 422 IVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLP 481
           + DT+ VS +N ITS+L+G+F F T+GN+  E  T++ +VI DGPG+IFVVYPQA+AK+P
Sbjct: 615 LRDTVAVSAVNMITSLLVGIFAFSTLGNLALEQNTNVRDVIGDGPGMIFVVYPQAMAKMP 674

Query: 482 FPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFF 541
           +   WAV+FFF LLCL LNSQFA+VEVVVTSIQDGFPRWIKR+L  HEIVVL VC++S  
Sbjct: 675 YAQLWAVMFFFMLLCLGLNSQFAIVEVVVTSIQDGFPRWIKRHLGYHEIVVLFVCVISCL 734

Query: 542 FGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSL 601
           FG+P + QGGIY+FQL+DHY AS  +M++AF +++A+AW YG+ +L++NV  MTGK PS 
Sbjct: 735 FGMPNIIQGGIYYFQLMDHYAASVTIMFLAFCQMIAIAWFYGTGRLSKNVKQMTGKAPSF 794

Query: 602 YFRFCWSIAAPLLI 615
           Y R CW +  P L+
Sbjct: 795 YLRSCWLVLGPCLL 808

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	631
FB|FBgn0011603	943	ine "inebriated" [Drosophila m	0.323	0.216	0.612	9.9e-114
ZFIN|ZDB-GENE-060531-39	612	si:ch211-225b11.1 "si:ch211-22	0.332	0.343	0.466	4e-83
ZFIN|ZDB-GENE-060531-57	590	si:ch211-283g2.1 "si:ch211-283	0.328	0.350	0.472	1.7e-82
MGI|MGI:2143484	729	Slc6a15 "solute carrier family	0.572	0.495	0.320	2.5e-79
UNIPROTKB|Q5R9C2	730	SLC6A15 "Sodium-dependent neut	0.572	0.494	0.317	6.6e-79
UNIPROTKB|Q9H2J7	730	SLC6A15 "Sodium-dependent neut	0.572	0.494	0.315	1.1e-78
RGD|628664	729	Slc6a15 "solute carrier family	0.572	0.495	0.309	1.7e-78
UNIPROTKB|Q9XS59	729	SLC6A15 "Sodium-dependent neut	0.573	0.496	0.318	1.7e-78
UNIPROTKB|E2R9L9	730	SLC6A15 "Transporter" [Canis l	0.583	0.504	0.313	2.8e-78
UNIPROTKB|E1BS25	725	SLC6A15 "Transporter" [Gallus	0.575	0.500	0.316	3.6e-78

FB|FBgn0011603 ine "inebriated" [Drosophila melanogaster (taxid:7227)]

 Score = 722 (259.2 bits), Expect = 9.9e-114, Sum P(2) = 9.9e-114
 Identities = 125/204 (61%), Positives = 163/204 (79%)

Query:   412 SSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFV 471
             +SYNKYNN I+ DT+ VS +N ITS+L+G+F F T+GN+  E  T++ +VI DGPG+IFV
Sbjct:   605 ASYNKYNNNILRDTVAVSAVNMITSLLVGIFAFSTLGNLALEQNTNVRDVIGDGPGMIFV 664

Query:   472 VYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIV 531
             VYPQA+AK+P+   WAV+FFF LLCL LNSQFA+VEVVVTSIQDGFPRWIKR+L  HEIV
Sbjct:   665 VYPQAMAKMPYAQLWAVMFFFMLLCLGLNSQFAIVEVVVTSIQDGFPRWIKRHLGYHEIV 724

Query:   532 VLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNV 591
             VL VC++S  FG+P + QGGIY+FQL+DHY AS  +M++AF +++A+AW YG+ +L++NV
Sbjct:   725 VLFVCVISCLFGMPNIIQGGIYYFQLMDHYAASVTIMFLAFCQMIAIAWFYGTGRLSKNV 784

Query:   592 HHMTGKFPSLYFRFCWSIAAPLLI 615
               MTGK PS Y R CW +  P L+
Sbjct:   785 KQMTGKAPSFYLRSCWLVLGPCLL 808

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=ISS;NAS

GO:0005886 "plasma membrane" evidence=ISS

GO:0042066 "perineurial glial growth" evidence=IGI

GO:0005034 "osmosensor activity" evidence=IMP

GO:0047484 "regulation of response to osmotic stress" evidence=IMP

GO:0019226 "transmission of nerve impulse" evidence=IMP

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0009881 "photoreceptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-060531-39 si:ch211-225b11.1 "si:ch211-225b11.1" [Danio rerio (taxid:7955)]

 Score = 531 (192.0 bits), Expect = 4.0e-83, Sum P(2) = 4.0e-83
 Identities = 104/223 (46%), Positives = 146/223 (65%)

Query:   411 ISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILD------ 464
             ++SYNKYNN I+ DT +VS+ N+ TS++ G  IF  IG + + H   ++++  D      
Sbjct:   318 MASYNKYNNNILRDTFIVSLANSATSIVAGFVIFSAIGYMAHIHNLPVDDIATDVIFGLF 377

Query:   465 ------GPGLIFVVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFP 518
                   GPGL+FVVYP+  + +P    WA LFF  LLCL L+SQFA+VEV VT I DGF 
Sbjct:   378 VCLFSAGPGLVFVVYPEVFSTMPVSQLWAPLFFIMLLCLGLDSQFAMVEVAVTFIMDGFG 437

Query:   519 RWIKRYLVCHEIVVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAV 578
             R   +     E++VL VC   F  G+P++T+GGIY FQL+DHYTA  ++M++AFFEV+AV
Sbjct:   438 RKALKVFKRKELIVLAVCSFGFLLGIPHITRGGIYVFQLMDHYTAVVSLMFLAFFEVLAV 497

Query:   579 AWIYGSDKLARNVHHMTGKFPSLYFRFCWSIAAPLLIL-IRIS 620
               I+G  +L+  V +M GK P+L+FR CW   +P+L+L I IS
Sbjct:   498 TLIFGVKRLSVMVENMLGKKPNLFFRICWQYLSPMLVLGILIS 540

GO:0016021 "integral to membrane" evidence=IEA

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

ZFIN|ZDB-GENE-060531-57 si:ch211-283g2.1 "si:ch211-283g2.1" [Danio rerio (taxid:7955)]

 Score = 531 (192.0 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
 Identities = 102/216 (47%), Positives = 144/216 (66%)

Query:   411 ISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEH-----ETSIENVILD- 464
             ++SYN YNN ++ DT+ ++I N++TS+  G  IF   G +++       E +++ V LD 
Sbjct:   270 MASYNNYNNNVLKDTLAIAITNSLTSIFAGFVIFSAFGYMSHLQNVPVSEIAVDAVSLDF 329

Query:   465 ---GPGLIFVVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWI 521
                GPGL+ VVYPQA   +P    WA LFFF LLCL L+SQFA+VEV+VTS+ D + + I
Sbjct:   330 SPAGPGLVLVVYPQAFVTMPVAPLWAFLFFFMLLCLGLDSQFAMVEVMVTSLLDSYSKPI 389

Query:   522 KRYLVCHEIVVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWI 581
              ++L   E +VL+VC  +F  G+P V Q GIY FQL+DHYTA  ++M++AFFEVV V W 
Sbjct:   390 LKHLKRKEFLVLLVCGAAFLLGIPNVMQVGIYVFQLMDHYTAIVSIMFLAFFEVVGVCWC 449

Query:   582 YGSDKLARNVHHMTGKFPSLYFRFCWSIAAPLLILI 617
             YG  +L+ N+  MTGK PS++FR CW +  P LI +
Sbjct:   450 YGVKRLSSNLVEMTGKRPSIFFRICWWVICPALITV 485

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

MGI|MGI:2143484 Slc6a15 "solute carrier family 6 (neurotransmitter transporter), member 15" [Mus musculus (taxid:10090)]

 Score = 569 (205.4 bits), Expect = 2.5e-79, Sum P(2) = 2.5e-79
 Identities = 123/384 (32%), Positives = 210/384 (54%)

Query:   245 KVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFL 304
             + L I+S I   G   W++  C  V+W++V  A+ K ++SSG+++YF++  P++++  FL
Sbjct:   210 EALDITSSISDSGGLNWKMTVCLLVAWVMVCLAMIKGIQSSGKIMYFSSLFPYVVLICFL 269

Query:   305 CFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQ 364
               SL L+GS  G+R+ F P  E++ + KVW  A  Q+F ++G+ +G VI FSSYNK +N 
Sbjct:   270 IRSLLLNGSIDGIRHMFTPKLEMMLEPKVWREAATQVFFALGLGFGGVIAFSSYNKRDNN 329

Query:   365 IIVDTMVVSIINTITSVLIGVFIFITIG---NITYE-----HETSIENVILDGFISSYNK 416
                D ++VS IN  TSVL  + +F  +G   NI  E     +   I  ++  G IS ++ 
Sbjct:   330 CHFDAVLVSFINFFTSVLATLVVFAVLGFKANIVNEKCISQNSEMILKLLKMGNIS-WDV 388

Query:   417 YNNQIIVDTMVVSIINTITSVLIGV----FIFITIGNITYEHETSIENVILDGPGLIFVV 472
               + I +  + V     +  ++  V    F  + +     E E    N  + G GL F+ 
Sbjct:   389 IPHHINLSAVTVEDYRLVYDIIQKVKEEEFAVLHLNACQIEDEL---NKAVQGTGLAFIA 445

Query:   473 YPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVV 532
             + +A+   P   FW+V+FF  L+ L L S F  +E ++T I D F   +++     EI+ 
Sbjct:   446 FTEAMTHFPASPFWSVMFFLMLINLGLGSMFGTIEGIITPIVDTFK--VRK-----EILT 498

Query:   533 LVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVH 592
             ++ C+++F  GL +V + G YF  + D Y+A+  ++ V   E +AV+++YG DK   ++ 
Sbjct:   499 VICCLLAFCIGLIFVQRSGNYFVTMFDDYSATLPLLIVVILENIAVSFVYGIDKFIEDLT 558

Query:   593 HMTGKFPSLYFRFCWSIAAPLLIL 616
              M G  PS Y+ + W   +PL++L
Sbjct:   559 DMLGFAPSKYYYYMWKYISPLMLL 582

GO:0005298 "proline:sodium symporter activity" evidence=IDA

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0015804 "neutral amino acid transport" evidence=ISO;IDA

GO:0015807 "L-amino acid transport" evidence=IDA

GO:0015820 "leucine transport" evidence=IDA

GO:0015824 "proline transport" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0035524 "proline transmembrane transport" evidence=IDA

GO:0035725 "sodium ion transmembrane transport" evidence=IDA

UNIPROTKB|Q5R9C2 SLC6A15 "Sodium-dependent neutral amino acid transporter B(0)AT2" [Pongo abelii (taxid:9601)]

 Score = 563 (203.2 bits), Expect = 6.6e-79, Sum P(2) = 6.6e-79
 Identities = 122/384 (31%), Positives = 209/384 (54%)

Query:   245 KVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFL 304
             + L ISS I + G   W++  C   +W++V  A+ K ++SSG+++YF++  P++++  FL
Sbjct:   210 EALNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKIIYFSSLFPYVVLICFL 269

Query:   305 CFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQ 364
               +L L+GS  G+R+ F P  E++ + KVW  A  Q+F ++G+ +G VI FSSYNK +N 
Sbjct:   270 IRALLLNGSIDGIRHMFTPKLEIMLEPKVWREAATQVFFALGLGFGGVIAFSSYNKRDNN 329

Query:   365 IIVDTMVVSIINTITSVLIGVFIFITIG---NITYEHETSIENVILDGFISSYNKYNNQI 421
                D ++VS IN  TSVL  + +F  +G   N+  E   +  +  +  F+   N  +  I
Sbjct:   330 CHFDAVLVSFINFFTSVLATLVVFAVLGFKANVINEKCITQNSQTIMKFLKMGN-ISQDI 388

Query:   422 I---VDTMVVS------IINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVV 472
             I   ++   V+      + + I  V    F  + + +   E E    N  + G GL F+ 
Sbjct:   389 IPHHINLSAVTAEDYHLVYDIIQKVKEEEFPALHLNSCKIEEEL---NKAVQGTGLAFIA 445

Query:   473 YPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVV 532
             + +A+   P   FW+V+FF  L+ L L S F  +E +VT I D F   +++     EI+ 
Sbjct:   446 FTEAMTHFPASPFWSVMFFLMLVNLGLGSMFGTIEGIVTPIVDTFK--VRK-----EILT 498

Query:   533 LVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVH 592
             ++ C+++F  GL +V + G YF  + D Y+A+  ++ V   E +AV ++YG DK   ++ 
Sbjct:   499 VICCLLAFCIGLIFVQRSGNYFVTMFDDYSATLPLLIVVILENIAVCFVYGIDKFMEDLK 558

Query:   593 HMTGKFPSLYFRFCWSIAAPLLIL 616
              M G  PS Y+ + W   +PL++L
Sbjct:   559 DMLGFAPSRYYYYMWKYVSPLMLL 582

GO:0005298 "proline:sodium symporter activity" evidence=ISS

GO:0015804 "neutral amino acid transport" evidence=ISS

GO:0015820 "leucine transport" evidence=ISS

GO:0015824 "proline transport" evidence=ISS

UNIPROTKB|Q9H2J7 SLC6A15 "Sodium-dependent neutral amino acid transporter B(0)AT2" [Homo sapiens (taxid:9606)]

 Score = 561 (202.5 bits), Expect = 1.1e-78, Sum P(2) = 1.1e-78
 Identities = 121/384 (31%), Positives = 209/384 (54%)

Query:   245 KVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFL 304
             + L ISS I + G   W++  C   +W++V  A+ K ++SSG+++YF++  P++++  FL
Sbjct:   210 EALNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKIIYFSSLFPYVVLICFL 269

Query:   305 CFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQ 364
               +  L+GS  G+R+ F P  E++ + KVW  A  Q+F ++G+ +G VI FSSYNK +N 
Sbjct:   270 IRAFLLNGSIDGIRHMFTPKLEIMLEPKVWREAATQVFFALGLGFGGVIAFSSYNKRDNN 329

Query:   365 IIVDTMVVSIINTITSVLIGVFIFITIG---NITYE-----HETSIENVILDGFISSYNK 416
                D ++VS IN  TSVL  + +F  +G   N+  E     +  +I   +  G IS  + 
Sbjct:   330 CHFDAVLVSFINFFTSVLATLVVFAVLGFKANVINEKCITQNSETIMKFLKMGNISQ-DI 388

Query:   417 YNNQIIVDTMVVSIINTITSVLIGV----FIFITIGNITYEHETSIENVILDGPGLIFVV 472
               + I + T+     + +  ++  V    F  + + +   E E    N  + G GL F+ 
Sbjct:   389 IPHHINLSTVTAEDYHLVYDIIQKVKEEEFPALHLNSCKIEEEL---NKAVQGTGLAFIA 445

Query:   473 YPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVV 532
             + +A+   P   FW+V+FF  L+ L L S F  +E +VT I D F   +++     EI+ 
Sbjct:   446 FTEAMTHFPASPFWSVMFFLMLVNLGLGSMFGTIEGIVTPIVDTFK--VRK-----EILT 498

Query:   533 LVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVH 592
             ++ C+++F  GL +V + G YF  + D Y+A+  ++ V   E +AV ++YG DK   ++ 
Sbjct:   499 VICCLLAFCIGLIFVQRSGNYFVTMFDDYSATLPLLIVVILENIAVCFVYGIDKFMEDLK 558

Query:   593 HMTGKFPSLYFRFCWSIAAPLLIL 616
              M G  PS Y+ + W   +PL++L
Sbjct:   559 DMLGFAPSRYYYYMWKYISPLMLL 582

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005298 "proline:sodium symporter activity" evidence=IEA

GO:0005326 "neurotransmitter transporter activity" evidence=NAS

GO:0006836 "neurotransmitter transport" evidence=NAS

GO:0016021 "integral to membrane" evidence=NAS

GO:0015820 "leucine transport" evidence=ISS

GO:0015824 "proline transport" evidence=ISS

GO:0015804 "neutral amino acid transport" evidence=IDA

GO:0005886 "plasma membrane" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0006865 "amino acid transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

RGD|628664 Slc6a15 "solute carrier family 6 (neutral amino acid transporter), member 15" [Rattus norvegicus (taxid:10116)]

 Score = 562 (202.9 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
 Identities = 119/384 (30%), Positives = 209/384 (54%)

Query:   245 KVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFL 304
             + L ISS I + G   W++  C   +W++V  A+ K ++SSG+++YF++  P++++  FL
Sbjct:   210 EALAISSSISESGGLNWKMTGCLLAAWVMVCLAMIKGIQSSGKIMYFSSLFPYVVLICFL 269

Query:   305 CFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQ 364
               SL L+GS  G+R+ F P  E++ + KVW  A  Q+F ++G+ +G VI FSSYNK +N 
Sbjct:   270 IRSLLLNGSIDGIRHMFTPKLEMMLEPKVWREAATQVFFALGLGFGGVIAFSSYNKRDNN 329

Query:   365 IIVDTMVVSIINTITSVLIGVFIFITIG---NITYE-----HETSIENVILDGFISSYNK 416
                D ++VS IN  TSVL  + +F  +G   NI  E     +   I  ++  G +S ++ 
Sbjct:   330 CHFDAVLVSFINFFTSVLATLVVFAVLGFKANIVNEKCISQNSEMILKLLKTGNVS-WDV 388

Query:   417 YNNQIIVDTMVVSIINTITSVLIGV----FIFITIGNITYEHETSIENVILDGPGLIFVV 472
                 I +  +     + +  ++  V    F  + +     E E    N  + G GL F+ 
Sbjct:   389 IPRHINLSAVTAEDYHVVYDIIQKVKEEEFAVLHLKACQIEDEL---NKAVQGTGLAFIA 445

Query:   473 YPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVV 532
             + +A+   P   FW+V+FF  L+ L L S F  +E ++T + D F   +++     EI+ 
Sbjct:   446 FTEAMTHFPASPFWSVMFFLMLINLGLGSMFGTIEGIITPVVDTFK--VRK-----EILT 498

Query:   533 LVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVH 592
             ++ C+++F  GL +V + G YF  + D Y+A+  ++ V   E +AV+++YG DK   ++ 
Sbjct:   499 VICCLLAFCIGLMFVQRSGNYFVTMFDDYSATLPLLIVVILENIAVSFVYGIDKFLEDLT 558

Query:   593 HMTGKFPSLYFRFCWSIAAPLLIL 616
              M G  PS Y+ + W   +PL+++
Sbjct:   559 DMLGFAPSKYYYYMWKYISPLMLV 582

GO:0005298 "proline:sodium symporter activity" evidence=ISO;ISS

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0015804 "neutral amino acid transport" evidence=ISO;ISS

GO:0015807 "L-amino acid transport" evidence=ISO

GO:0015820 "leucine transport" evidence=IEA;ISO

GO:0015824 "proline transport" evidence=ISO

GO:0035524 "proline transmembrane transport" evidence=ISO

GO:0035725 "sodium ion transmembrane transport" evidence=ISO

UNIPROTKB|Q9XS59 SLC6A15 "Sodium-dependent neutral amino acid transporter B(0)AT2" [Bos taurus (taxid:9913)]

 Score = 556 (200.8 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
 Identities = 122/383 (31%), Positives = 208/383 (54%)

Query:   245 KVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFL 304
             + L IS+ I + G   W++  C   +W++V  A+ K ++SSG+++YF++  P++++  FL
Sbjct:   210 EALNISTSISESGGLNWKMTICLLAAWVVVCLAMIKGIQSSGKIMYFSSLFPYVVLICFL 269

Query:   305 CFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQ 364
               +L L+GS  G+R+ F P  E++ + KVW  A AQ+F ++G+ +G VI FSSYNK +N 
Sbjct:   270 IRALLLNGSVDGIRHMFTPELEIMLEPKVWREAAAQVFFALGLGFGGVIAFSSYNKRDNN 329

Query:   365 IIVDTMVVSIINTITSVLIGVFIFITIG---NITYEH---ETS--IENVILDGFISSY-- 414
                D ++VS IN  TS+L  + +F  +G   N+  E    E S  I  ++  G IS    
Sbjct:   330 CHFDAVLVSFINFFTSILATLVVFAVLGFKANVINEKCIAENSEMIIKLVKMGNISQDII 389

Query:   415 -NKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVY 473
              +  N   I       I + I  V    F  + +     E E    N  + G GL F+ +
Sbjct:   390 PHHINFSAITAEDYDLIYDIIQKVKEEEFPALHLNACQIEDEL---NKAVQGTGLAFIAF 446

Query:   474 PQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVL 533
              +A+   P   FW+V+FF  L+ L L S F  +E ++T + D F   +++     EI+ +
Sbjct:   447 TEAMTHFPASPFWSVMFFLMLVNLGLGSMFGTIEGIITPVVDTFK--VRK-----EILTV 499

Query:   534 VVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHH 593
             + C+++F  GL +V + G YF  + D Y+A+  ++ V   E +AV+++YG DK   ++  
Sbjct:   500 ICCLLAFCIGLIFVQRSGNYFVTMFDDYSATLPLLIVVILENIAVSFVYGIDKFMEDLKD 559

Query:   594 MTGKFPSLYFRFCWSIAAPLLIL 616
             M G  P+ Y+ + W   +PL++L
Sbjct:   560 MLGFTPNRYYYYMWKYISPLMLL 582

GO:0005298 "proline:sodium symporter activity" evidence=ISS

GO:0015804 "neutral amino acid transport" evidence=ISS

GO:0015824 "proline transport" evidence=ISS

GO:0015820 "leucine transport" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

UNIPROTKB|E2R9L9 SLC6A15 "Transporter" [Canis lupus familiaris (taxid:9615)]

 Score = 552 (199.4 bits), Expect = 2.8e-78, Sum P(2) = 2.8e-78
 Identities = 124/396 (31%), Positives = 216/396 (54%)

Query:   245 KVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFL 304
             + L ISS I + G   W++  C   +W++V  A+ K ++SSG+V+YF++  P++++  FL
Sbjct:   210 ETLNISSSISESGGLNWKMTVCLLAAWVVVCLAMIKGIQSSGKVMYFSSLFPYVVLICFL 269

Query:   305 CFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQ 364
                L L+GS  G+R+ F P  E++ + +VW  A  Q+F ++G+ +G VI FSSYNK +N 
Sbjct:   270 VRVLLLNGSIDGIRHMFTPKLEMMMEPRVWREAATQVFFALGLGFGGVIAFSSYNKRDNN 329

Query:   365 IIVDTMVVSIINTITSVLIGVFIFITIG---NITYEHETSIENVILDGFISSYNKYNNQI 421
                D ++VS +N  TSVL  + +F  +G   N+  E   +  + I+   +   N  +  I
Sbjct:   330 CHFDAVLVSFVNFFTSVLATLVVFAVLGFKANVINEKCITENSKIIIKLLKMGN-ISQDI 388

Query:   422 I---VDTMVVS------IINTITSVLIGVF--IFITIGNITYEHETSIENVILDGPGLIF 470
             I   ++   V+      + + I  V    F  +   I N T  HET  + V   G GL F
Sbjct:   389 IPHHINLSAVTAEDYRLVYDIIQKVKEEEFSQLHSKIANTT--HETKHKAV--QGTGLAF 444

Query:   471 VVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEI 530
             + + +A+   P   FW+V+FFF L+ L + S F  +E ++T I D F    ++     EI
Sbjct:   445 IAFTEAMTHFPASPFWSVMFFFMLVNLGIGSMFGTIEGIITPIVDTFKA--RK-----EI 497

Query:   531 VVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARN 590
             + +V C+++F  GL +V + G YF  + D Y+A+  ++ +   E +AV+++YG DK   +
Sbjct:   498 LTVVCCLLAFCIGLIFVQRSGNYFVTMFDDYSATLPLLIIVILENIAVSFVYGIDKFMED 557

Query:   591 VHHMTGKFPSLYFRFCWSIAAPLLI--LIRISLTHL 624
             +  M G  P+ Y+ + W   +PL++  L+  S+ ++
Sbjct:   558 LKDMLGFAPNRYYYYMWKYISPLMLFSLLMASVVNM 593

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

UNIPROTKB|E1BS25 SLC6A15 "Transporter" [Gallus gallus (taxid:9031)]

 Score = 560 (202.2 bits), Expect = 3.6e-78, Sum P(2) = 3.6e-78
 Identities = 121/382 (31%), Positives = 208/382 (54%)

Query:   245 KVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFL 304
             + L ISS + + G   W++  C   +W++V  A+ K ++SSG+++YF++  P++++  FL
Sbjct:   212 EALNISSSLSESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKIMYFSSLFPYVVLLCFL 271

Query:   305 CFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQ 364
                L L+GS  G+R+   P  E++ + KVW  A  Q+F ++G+ +G VI FSSYNK +N 
Sbjct:   272 VRGLLLNGSLDGIRHMLTPKLEIMLEPKVWREAATQVFFALGLGFGGVIAFSSYNKRDNN 331

Query:   365 IIVDTMVVSIINTITSVLIGVFIFITIG---NITYE-----HETSIENVILDGFISSYNK 416
                D ++VS IN  TSVL  + +F  +G   NI  E     +   I  ++  G +S  + 
Sbjct:   332 CHFDAVLVSFINFFTSVLATLVVFAVLGFKANIINEKCVIQNSEKILKLLKTGNLSQ-DM 390

Query:   417 YNNQIIVDTMVVSIINTITSVLIGVFI--FITIGNITYEHETSIENVILDGPGLIFVVYP 474
               + I   ++     N +  ++  V    F ++G  + + E  +   +  G GL F+ + 
Sbjct:   391 IPHHINFSSITAEDYNLVYDIIQKVKEEEFESLGLKSCQIEDELGKAV-QGTGLAFIAFT 449

Query:   475 QALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLV 534
             +A+   P   FW+V+FF  L+ L L S F  +E ++T I D F   I++     EI+ ++
Sbjct:   450 EAMTHFPASPFWSVMFFLMLVNLGLGSMFGTIEGIITPIVDTFK--IRK-----EILTVI 502

Query:   535 VCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHM 594
              C+V+FF GL +V + G YF  + D Y+A+  ++ V   E +AV  IYG +K   ++  M
Sbjct:   503 CCLVAFFIGLIFVQRSGNYFVTMFDDYSATLPLLIVVILENIAVTRIYGIEKFMEDLKDM 562

Query:   595 TGKFPSLYFRFCWSIAAPLLIL 616
              G  PS Y+ + W   +PL++L
Sbjct:   563 LGFSPSQYYYYMWKYISPLVLL 584

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005298 "proline:sodium symporter activity" evidence=IEA

GO:0015820 "leucine transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35899	SC6A4_CAVPO	No assigned EC number	0.3105	0.6877	0.6888	yes	N/A
P31649	S6A13_MOUSE	No assigned EC number	0.3231	0.6909	0.7242	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	631
cd11496	543	cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-depen	1e-142
cd10324	417	cd10324, SLC6sbd, Solute carrier 6 family, neurotr	1e-110
cd11509	592	cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent c	3e-99
cd11513	537	cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent	2e-97
cd11510	542	cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent	4e-91
cd10332	565	cd10332, SLC6sbd-B0AT-like, System B(0) neutral am	5e-91
cd11497	539	cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-depen	2e-78
cd11500	544	cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent	2e-77
cd11556	552	cd11556, SLC6sbd_SERT-like_u1, uncharacterized sub	1e-73
cd11507	544	cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent	3e-73
cd11506	598	cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent	8e-68
cd11499	606	cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent	2e-63
cd11517	576	cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3	5e-63
pfam00209	506	pfam00209, SNF, Sodium:neurotransmitter symporter	2e-62
cd11512	560	cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent n	4e-62
cd11518	576	cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent	5e-62
cd11501	601	cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent	3e-61
cd11522	580	cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-ch	8e-60
cd11507	544	cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent	4e-59
cd11497	539	cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-depen	3e-57
cd11498	585	cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent	3e-56
cd11516	581	cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral am	4e-56
cd11500	544	cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent	1e-54
cd11514	555	cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent	1e-54
cd11515	530	cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurot	1e-54
cd11521	589	cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransm	2e-53
cd10334	480	cd10334, SLC6sbd_u1, uncharacterized bacterial and	2e-52
cd11499	606	cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent	1e-49
cd11501	601	cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent	2e-49
cd11511	541	cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent	2e-49
cd11556	552	cd11556, SLC6sbd_SERT-like_u1, uncharacterized sub	6e-49
pfam00209	506	pfam00209, SNF, Sodium:neurotransmitter symporter	2e-46
cd11502	543	cd11502, SLC6sbd_NTT5, Neurotransmitter transporte	4e-46
cd11554	406	cd11554, SLC6sbd_u2, uncharacterized eukaryotic so	2e-43
cd11514	555	cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent	3e-43
cd11508	542	cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent	2e-39
cd11512	560	cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent n	9e-39
cd11511	541	cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent	3e-38
cd11498	585	cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent	1e-36
pfam00209	506	pfam00209, SNF, Sodium:neurotransmitter symporter	1e-34
cd11508	542	cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent	2e-33
COG0733	439	COG0733, COG0733, Na+-dependent transporters of th	2e-33
cd10332	565	cd10332, SLC6sbd-B0AT-like, System B(0) neutral am	4e-28
cd10324	417	cd10324, SLC6sbd, Solute carrier 6 family, neurotr	5e-28
cd11554	406	cd11554, SLC6sbd_u2, uncharacterized eukaryotic so	1e-23
cd10336	439	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfa	5e-23
cd11506	598	cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent	6e-23
cd11522	580	cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-ch	6e-23
cd11515	530	cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurot	1e-22
cd11518	576	cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent	7e-22
cd11502	543	cd11502, SLC6sbd_NTT5, Neurotransmitter transporte	7e-22
cd11508	542	cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent	7e-22
cd11521	589	cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransm	1e-21
cd11517	576	cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3	4e-20
cd11516	581	cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral am	6e-20
cd10334	480	cd10334, SLC6sbd_u1, uncharacterized bacterial and	1e-12
cd11554	406	cd11554, SLC6sbd_u2, uncharacterized eukaryotic so	2e-12
cd10336	439	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfa	1e-11
COG0733	439	COG0733, COG0733, Na+-dependent transporters of th	2e-10
cd10332	565	cd10332, SLC6sbd-B0AT-like, System B(0) neutral am	4e-08
cd10324	417	cd10324, SLC6sbd, Solute carrier 6 family, neurotr	2e-07
cd10333	500	cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and	2e-07
cd10333	500	cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and	3e-07
cd11496	543	cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-depen	4e-07
pfam00209	506	pfam00209, SNF, Sodium:neurotransmitter symporter	4e-07
cd11500	544	cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent	7e-06
cd11506	598	cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent	1e-05
COG0733	439	COG0733, COG0733, Na+-dependent transporters of th	1e-05
cd11509	592	cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent c	2e-05
cd11499	606	cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent	2e-05
cd11522	580	cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-ch	2e-05
cd11521	589	cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransm	2e-05
cd10336	439	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfa	2e-05
cd11517	576	cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3	3e-05
cd11515	530	cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurot	3e-05
cd11518	576	cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent	5e-05
cd11501	601	cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent	5e-05
cd11498	585	cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent	1e-04
cd10334	480	cd10334, SLC6sbd_u1, uncharacterized bacterial and	1e-04
cd11516	581	cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral am	2e-04
cd11502	543	cd11502, SLC6sbd_NTT5, Neurotransmitter transporte	4e-04
cd11508	542	cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent	4e-04
cd11507	544	cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent	7e-04
cd11497	539	cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-depen	0.001
cd11511	541	cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent	0.001
cd10333	500	cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and	0.001
cd11510	542	cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent	0.002
cd10333	500	cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and	0.002
cd11513	537	cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent	0.003
cd11512	560	cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent n	0.003

>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain

 Score =  423 bits (1089), Expect = e-142
 Identities = 196/558 (35%), Positives = 284/558 (50%), Gaps = 119/558 (21%)

Query: 61  VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
            FL+PYFI L LCGIPI ++E+A+GQ+T +G I    K+CP FKG G +S +I F+++ Y
Sbjct: 38  AFLIPYFIFLVLCGIPIFFLEVALGQYTSQGGITAW-KICPLFKGIGYASAVIVFWLNIY 96

Query: 121 YNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPS 180
           Y V++A++L+Y   SF S+LPW  C N WNT+ C      T  +    +L +N S    S
Sbjct: 97  YIVILAWALFYLFNSFTSELPWTTCDNWWNTECC----VETYSNNNLSNLTKNCSNNTNS 152

Query: 181 KTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLW 240
            +P EEF                                                    W
Sbjct: 153 TSPVEEF----------------------------------------------------W 160

Query: 241 RFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLI 300
               +VL IS GI+ +G  RWEL  C  ++WI+ YF +WK V+S+G+V+YFTAT P++++
Sbjct: 161 E--RRVLGISDGIEDIGSIRWELALCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYVML 218

Query: 301 FVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNK 360
            + L   +TL G+  G+ ++  P+   L D +VW++AG QI             F SY  
Sbjct: 219 IILLIRGVTLPGASDGIYFYLKPDLTKLLDPQVWIDAGTQI-------------FFSYG- 264

Query: 361 YNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQ 420
                                 IG+     +G                    SYNK+NN 
Sbjct: 265 ----------------------IGLGSLTALG--------------------SYNKFNNN 282

Query: 421 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKL 480
              D++++  +N+ TS   G  IF  +G +  E    I  V   GPGL F+ YP+A++ L
Sbjct: 283 CYKDSIILCFLNSGTSFFAGFAIFSILGFMAQEQGVPISEVAESGPGLAFIAYPRAVSLL 342

Query: 481 PFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWI-KRYLVCHEIVVLVVCIVS 539
           P P  WAVLFF  LL L L+SQF  VE  VT+I D +P  +  RY    EI V +VC+V 
Sbjct: 343 PLPQLWAVLFFIMLLLLGLDSQFVGVEGFVTAIVDLYPNVLRLRYR--REIFVAIVCLVC 400

Query: 540 FFFGLPYVTQGGIYFFQLIDHYTAS-TAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKF 598
           F  GLP VT+GGIY FQL D+Y AS   ++++AFFE +A++W+YG+D+   N+  M G  
Sbjct: 401 FLIGLPMVTEGGIYVFQLFDYYAASGICLLWLAFFECIAISWVYGADRFYDNIEDMIGYR 460

Query: 599 PSLYFRFCWSIAAPLLIL 616
           P  ++++CW    P + L
Sbjct: 461 PGPWWKYCWKFLTPAICL 478

This subgroup represents the solute-binding domain of TauT-like Na(+)- and Cl(-)-dependent transporters. Family members include: human TauT which transports taurine, human GAT1, GAT2, and GAT3, and BGT1, which transport gamma-aminobutyric acid (GABA), and human CT1 which transports creatine. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 543

>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter transporters; solute-binding domain

 Score =  336 bits (864), Expect = e-110
 Identities = 144/358 (40%), Positives = 209/358 (58%), Gaps = 60/358 (16%)

Query: 260 RWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFLCFSLTLDGSEIGLRY 319
            WEL  C  ++WILVY  ++K V+SSG+V+YFTAT P++++F+ L   +TL G+  G+ Y
Sbjct: 114 NWELALCLLLAWILVYLCIFKGVKSSGKVVYFTATFPYVVLFILLIRGVTLPGAGDGILY 173

Query: 320 FFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQIIVDTMVVSIINTIT 379
           F  P++  L D KVW  A  QIF S+ I +G +                           
Sbjct: 174 FLTPDWSKLLDPKVWYAAATQIFFSLSIGFGGL--------------------------- 206

Query: 380 SVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIVDTMVVSIINTITSVLI 439
                         ITY               +SYNK++N I  D ++VSI+NT+TS+L 
Sbjct: 207 --------------ITY---------------ASYNKFDNNIYRDALIVSILNTLTSLLA 237

Query: 440 GVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPNFWAVLFFFSLLCLAL 499
           G  IF  +G + +E    + +V+  GPGL FVVYP+A+AK+P P  W+VLFFF L  L L
Sbjct: 238 GFVIFSVLGFLAHELGVPVADVVKGGPGLAFVVYPEAIAKMPVPQLWSVLFFFMLFLLGL 297

Query: 500 NSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGLPYVTQGGIYFFQLID 559
           +SQFA+VE +VT+I D FP+  KR      +V L VC+V F  GLPYVTQGGIY   L+D
Sbjct: 298 DSQFAIVETIVTAIVDEFPKLRKR----KWLVTLGVCVVGFLLGLPYVTQGGIYILDLLD 353

Query: 560 HYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLYFRFCWSIAAPLLILI 617
           +Y A+ +++ +A FE++A++WIYG D+  R++  M G  PS+Y+R CW    P+++L+
Sbjct: 354 YYAATFSLLVLALFELIAISWIYGVDRFLRDIEFMLGIPPSIYWRICWKFITPVILLV 411

This family represents the solute-binding domain of SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family). These use sodium and chloride electrochemical gradients to catalyze the thermodynamically uphill movement of a variety of substrates, and include neurotransmitter transporters (NTTs). The latter are Na+/Cl--dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. NTTs are widely expressed in the mammalian brain, and are involved in regulating neurotransmitter signaling and homeostasis, through facilitating the uptake of released neurotransmitters from the extracellular space into neurons and glial cells. NTTs are the target of a range of therapeutic drugs for the treatment of psychiatric diseases, such as major depression, anxiety disorders, attention deficit hyperactivity disorder and epilepsy. In addition, they are the primary targets of cocaine, amphetamines and other psychostimulants. This family also includes Drosophila Blot which is expressed primarily in epithelial tissues of ectodermal origin and in the nervous system of the embryo and larvae, but in addition found in the developing oocyte and the freshly laid egg. A lack or reduction of Blot function during oogenesis results in early arrest of embryonic development. 12 transmembrane helices (TMs) appears to be common for eukaryotic and some prokaryotic and archaeal SLC6s, (a core inverted topology repeat, TM1-5 and TM6-10, plus TMs11-12; TMs numbered to conform to the SLC6 Aquifex aeolicus LeuT), although a majority of bacterial, and some archaeal SLC6s lack TM12, for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1. Length = 417

>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine transporter 1; solute-binding domain

 Score =  314 bits (807), Expect = 3e-99
 Identities = 179/566 (31%), Positives = 292/566 (51%), Gaps = 107/566 (18%)

Query: 61  VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
           VFL+PY +I+F+ GIP+ ++E+A+GQF ++G I   + + P FKG G +S++I FF +TY
Sbjct: 38  VFLIPYLLIVFVGGIPVFFLEIALGQFMKQGGINAWN-IAPLFKGLGYASMVIVFFCNTY 96

Query: 121 YNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPS 180
           Y +++ + LYY   SF + LPW  CG+ WNT++C             +   ++ +    +
Sbjct: 97  YIMILVWGLYYLVHSFTNTLPWATCGHPWNTENC-----------TEIFRHEDCANGSLA 145

Query: 181 KTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLW 240
            + S+ F N+S     C   ++  S V               ++F              W
Sbjct: 146 NSWSQTFLNLS-----CDELANKRSPV---------------IEF--------------W 171

Query: 241 RFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLI 300
              +KVL++S G+++ G   WE++ C   +W++VYF +WK V+S+G+++YFTA  P++++
Sbjct: 172 E--NKVLRLSGGLEEPGALNWEMILCLLATWVIVYFCVWKGVKSTGKIVYFTALFPYVVL 229

Query: 301 FVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNK 360
            V L   +TL G+  G+ Y+  P++  L + +VW++AG QI             F SY  
Sbjct: 230 IVLLVHGVTLPGALDGIIYYLKPDWSKLGEAQVWIDAGTQI-------------FFSYA- 275

Query: 361 YNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQ 420
                                       I +G +T               + SYN+++N 
Sbjct: 276 ----------------------------IGLGALTA--------------LGSYNRFHNN 293

Query: 421 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKL 480
              D  ++++IN+ TS   G  +F  +G +  E    I  V   GPGL F+ YP+A+  +
Sbjct: 294 CYRDAFILALINSGTSFFAGFVVFSVLGFMASEQGVDISKVAESGPGLAFIAYPKAVTLM 353

Query: 481 PFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSF 540
           P    WA LFFF LL L L+SQF  VE  +T I D FP+     L   EI   + C++ F
Sbjct: 354 PVAPLWAALFFFMLLLLGLDSQFVGVEGFITGILDLFPQKYYGRLR-REITAALCCLLCF 412

Query: 541 FFGLPYVTQGGIYFFQLIDHYTAS-TAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFP 599
              L  VTQGG+Y FQL D+Y+AS   +++ AF+E V +AW+YG+D+   ++  M G  P
Sbjct: 413 LIDLSMVTQGGMYVFQLFDYYSASGITLLWQAFWECVVIAWVYGADRFMDDIARMIGYRP 472

Query: 600 SLYFRFCWSIAAPLLILIRISLTHLL 625
             + ++CWS+  P L+ + I L H++
Sbjct: 473 LPWMKWCWSVITP-LVCVGIFLFHVV 497

CT1 (also called CRTR, CRT) transports creatine. Human CT1 is encoded by the SLC6A8 gene. CT1 is ubiquitously expressed, with highest levels found in skeletal muscle and kidney. Creatine is absorbed from food or synthesized from arginine and plays an important role in energy metabolism. Deficiency in human CT1 leads to X-linked cerebral creatine transporter deficiency. In males, this disorder is characterized by language and speech delays, autistic-like behavior, seizures in about 50% of cases, and can also involve midfacial hypoplasia, and short stature. In females, it is characterized by mild cognitive impairment with behavior and learning problems. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 592

>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain

 Score =  308 bits (790), Expect = 2e-97
 Identities = 174/559 (31%), Positives = 267/559 (47%), Gaps = 123/559 (22%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
           FL+PY ++    GIP+ YMELA+GQ+ R G I +  K+CP FKG G +  II+ ++++YY
Sbjct: 39  FLIPYTLMAIFGGIPLFYMELALGQYHRTGCISIWRKICPIFKGIGYAICIIALYVASYY 98

Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSK 181
           N +IA++LYY  +SF + LPW  C N WNT +C        +D        N++  + S 
Sbjct: 99  NTIIAWALYYLISSFATTLPWTSCDNSWNTGNC---TNYFAKD--------NITWTLHST 147

Query: 182 TPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWR 241
           +P+EEFY                               T  V      V  S G+G+L  
Sbjct: 148 SPAEEFY-------------------------------TRHV----LQVHRSTGLGDL-- 170

Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF 301
                          G   W+L  C F+ + +VYF++WK V++SG+V++ TAT P++++F
Sbjct: 171 ---------------GGISWQLALCLFLIFTIVYFSIWKGVKTSGKVVWVTATFPYIVLF 215

Query: 302 VFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKY 361
           + L    TL G+  G+ Y+  P +  L +  VWV+A AQIF S+G  +G ++ FSSYNK+
Sbjct: 216 ILLIRGATLPGAWRGVVYYLKPKWHKLLETGVWVDAAAQIFFSLGPGFGVLLAFSSYNKF 275

Query: 362 NNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQI 421
           +N    D +V S++N +TS + G  IF  +G +       +  V  D   S         
Sbjct: 276 HNNCYQDALVTSVVNCLTSFVSGFVIFTVLGYMAEMRNEDVIEVATDAGPS--------- 326

Query: 422 IVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLP 481
                                +FIT                          Y +A+A +P
Sbjct: 327 --------------------LLFIT--------------------------YAEAIANMP 340

Query: 482 FPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPR-WIKRYLVCHEIVVLVVCIVSF 540
              F+A++FF  ++ L L+S F  +E V+T++ D FP    KR     EI VL + IV F
Sbjct: 341 GSTFFAIIFFLMIITLGLDSTFGGLEGVITAVLDEFPHVIGKR----REIFVLGLVIVCF 396

Query: 541 FFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPS 600
              L  +T GG Y  +L++ Y    AV+ V   E +AV+W YG  +   ++  M G  P 
Sbjct: 397 LGSLATLTFGGAYVVKLLEEYATGPAVLTVVLLEAIAVSWFYGITQFCSDIKEMLGFTPG 456

Query: 601 LYFRFCWSIAAPLLILIRI 619
            ++R CW   +PL +L  I
Sbjct: 457 WFWRVCWVAISPLFLLFII 475

SERT (also called 5-HTT), is a transmembrane transporter that transports the neurotransmitter serotonin from synaptic spaces into presynaptic neurons. The antiport of a K+ ion is believed to follow the transport of serotonin and promote the reorientation of SERT for another transport cycle. Human SERT is encoded by the SLC6A4 gene. SERT is expressed in brain, peripheral nervous system, placenta, epithelium, and platelets. SERT may play a role in diseases or disorders including anxiety, depression, autism, gastrointestinal disorders, premature ejaculation, and obesity. It may also have a role in social cognition. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 537

>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain

 Score =  292 bits (748), Expect = 4e-91
 Identities = 173/554 (31%), Positives = 269/554 (48%), Gaps = 118/554 (21%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
           FL+PYFI LF  G+P+ ++E+A+GQ+T  G I    KLCP F G G +S++I   ++ YY
Sbjct: 39  FLIPYFIFLFGGGLPVFFLEVALGQYTSEGGITCWEKLCPIFTGIGYASIVIVSLLNIYY 98

Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSK 181
            V+               L W                       G   L Q+    +P  
Sbjct: 99  IVI---------------LAW-----------------------GLYYLFQSFQSELP-- 118

Query: 182 TPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWR 241
                        + C+   ++ + V  T + + +  W S     +    ++  +   W 
Sbjct: 119 ------------WAHCNQSWNTPNCVEDTLR-KNKTLWAS-----INATNFTSPVTEFWE 160

Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF 301
               VL +SSGI+ +G  +W+L  C  + W++ +F +WK V+S+G+V+YFTAT PFL++ 
Sbjct: 161 --RNVLSLSSGIEHVGTIKWDLALCLLLVWVICFFCIWKGVKSTGKVVYFTATFPFLMLI 218

Query: 302 VFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKY 361
           V L   +TL G+  G++++  P+   L D +VW++AG QIF S  I  GA+ +  SYNKY
Sbjct: 219 VLLIRGVTLPGAAEGIKFYLYPDITRLGDPQVWIDAGTQIFFSYAICLGAMTSLGSYNKY 278

Query: 362 NNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQI 421
                                                               YN Y    
Sbjct: 279 K---------------------------------------------------YNCYR--- 284

Query: 422 IVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLP 481
             D M++  +N+ TS + G  IF  +G +  E    I +V   GPGL F+ YP+A+  +P
Sbjct: 285 --DCMLLGCLNSGTSFVSGFAIFSVLGFMAQEQGVDIADVAESGPGLAFIAYPKAVTMMP 342

Query: 482 FPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFF 541
            P FWA+LFF  LL L L+SQF  VE  +TS+ D +P ++++     EI + +VC +S+ 
Sbjct: 343 LPTFWAILFFIMLLLLGLDSQFVEVEGQITSLVDLYPSFLRKGYR-REIFIAIVCFISYL 401

Query: 542 FGLPYVTQGGIYFFQLIDHYTAS-TAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPS 600
            GL  VT+GG+Y FQL D+Y AS   +++VAFFE +AVAW+YG+D     +  M G  P 
Sbjct: 402 LGLTMVTEGGMYVFQLFDYYAASGVCLLWVAFFECIAVAWVYGADNFYDAIEDMIGYRPG 461

Query: 601 LYFRFCWSIAAPLL 614
            + ++ W +  P+L
Sbjct: 462 PWMKWSWIVITPVL 475

TauT is a Na(+)- and Cl(-)-dependent, high-affinity, low-capacity transporter of taurine and beta-alanine. Human TauT is encoded by the SLC6A6 gene. TauT is expressed in brain, retina, liver, kidney, heart, spleen, and pancreas. It may play a part in the supply of taurine to the intestinal epithelium and in the between-meal-capture of taurine. It may also participate in re-absorbing taurine that has been deconjugated from bile acids in the distal lumen. Functional TauT protects kidney cells from nephrotoxicity caused by the chemotherapeutic agent cisplatin; cisplatin down-regulates TauT in a p53-dependent manner. In mice, TauT has been shown to be important for the maintenance of skeletal muscle function and total exercise capacity. TauT-/- mice develop additional clinically important diseases, some of which are characterized by apoptosis, including vision loss, olfactory dysfunction, and chronic liver disease. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 542

>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid transporter AT1, 2 and 3, and related proteins; solute-binding domain

 Score =  292 bits (749), Expect = 5e-91
 Identities = 123/375 (32%), Positives = 207/375 (55%), Gaps = 16/375 (4%)

Query: 245 KVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFL 304
             L IS  ID+ G   W +  C  ++WI+VY  + K ++SSG+V+YFTAT P++++ +FL
Sbjct: 148 TTLDISPSIDESGGLNWWMTLCLLLAWIIVYLCMIKGIKSSGKVVYFTATFPYIVLIIFL 207

Query: 305 CFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQ 364
              LTL G+  GL++ F P FE L D +VW++A  QIF S+G+ +G++I FSSYN   N 
Sbjct: 208 IRGLTLKGAGDGLKHMFTPKFEKLLDPQVWLDAATQIFFSLGLGFGSLIAFSSYNPPKNN 267

Query: 365 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIVD 424
              D ++VS+IN  TS+   + +F  +G   ++  T  +  +    +     +      D
Sbjct: 268 CHRDAVLVSLINCFTSIFASIVVFSVLG---FKATTRYDRCVDSNILILVINFLLNSTED 324

Query: 425 TMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPN 484
            +         ++     + +T  ++  E + ++E     G GL F+V+ +A+ K P   
Sbjct: 325 YVDNYTAINNVTLTENQTLGLTNCSLEDELDEAVE-----GTGLAFIVFTEAIVKFPGAP 379

Query: 485 FWAVLFFFSLLCLALNSQFALVEVVVTSIQD--GFPRWIKRYLVCHEIVVLVVCIVSFFF 542
           FW+VLFF  LL L L S F  +E V+T + D    P+  K      E +  +VC+V F  
Sbjct: 380 FWSVLFFLMLLTLGLGSMFGTLEGVLTPLFDSKILPKVPK------EYLTGLVCLVCFLI 433

Query: 543 GLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLY 602
           GL +  + G Y+ Q+ D Y+ +  ++ +A FE++AV+++YG D+   ++ +MTGK P  Y
Sbjct: 434 GLIFTQRSGNYWVQMFDSYSGTLPLLIIALFEMIAVSYVYGLDRFEDDIEYMTGKRPGWY 493

Query: 603 FRFCWSIAAPLLILI 617
           ++  W   +PL +L+
Sbjct: 494 WKITWRYVSPLAMLV 508

This subgroup includes the solute-binding domain of transmembrane transporters, which transport, i) neutral amino acids: NTT4 (also called XT1), SBAT1 (also called B0AT2, v7-3, NTT7-3), and B0AT1 (also called HND); the human genes encoding these are SLC6A17, SLC6A15, and SLC6A19 respectively, ii) glycine: B0AT3 (also called Xtrp2, XT2), iii) imino acids, such as proline, pipecolate, MeAIB, and sarcosine: SIT1 (also called XTRP3, XT3, IMINO). The human genes encoding B0AT3 and SIT1 are SLC6A18 and SLC6A20 respectively. Transporters in this subgroup may play a role in disorders including major depression, Hartnup disorder, increased susceptibility to myocardial infarction, and iminoglycinuria. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 565

>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain

 Score =  258 bits (662), Expect = 2e-78
 Identities = 120/348 (34%), Positives = 181/348 (52%), Gaps = 60/348 (17%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
           FL+PY ++L   G+P+ YMELA+GQ+ R G I V  K+CP FKG G +  II+F+++ YY
Sbjct: 39  FLIPYLLMLIFGGLPLFYMELALGQYHRSGCITVWRKICPIFKGVGYAICIIAFYVAFYY 98

Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSK 181
           N +IA++LYY  +SF S+LPW  C N WNT +C              +            
Sbjct: 99  NTIIAWALYYLFSSFTSELPWTSCNNPWNTPNCTDVSNRNNSSSSNGT--------WTLH 150

Query: 182 TPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWR 241
           +P+EEF+                         RK              +  S GI +L  
Sbjct: 151 SPAEEFFE------------------------RKVLE-----------LQKSEGIDDL-- 173

Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF 301
                          G  +W+L  C F  +I+VYF+LWK V+SSG+V++ TAT+P++++ 
Sbjct: 174 ---------------GGPKWQLALCLFAVFIIVYFSLWKGVKSSGKVVWVTATMPYVVLS 218

Query: 302 VFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKY 361
           + L   LTL G+  G++Y+  PN+  L D KVW++A  QIF S+G  +G ++  SSYNK+
Sbjct: 219 ILLIRGLTLPGASDGIKYYLTPNWSKLKDPKVWIDAATQIFFSLGPGFGVLLALSSYNKF 278

Query: 362 NNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDG 409
           +N    D ++ S IN +TS   G  IF  +G + ++    IE V  +G
Sbjct: 279 HNNCYRDALITSSINCLTSFFSGFVIFSVLGYMAHKQNVDIEVVATEG 326

This subgroup represents the solute-binding domain of transmembrane transporters that transport monoamine neurotransmitters from synaptic spaces into presynaptic neurons. Members include: NET which transports norepinephrine, SERT which transports serotonin, and DAT1 which transports dopamine. These transporters may play a role in diseases including depression, anxiety disorders, attention-deficit hyperactivity disorder, and in the control of human behavior and emotional states. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 539

>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain

 Score =  256 bits (655), Expect = 2e-77
 Identities = 128/349 (36%), Positives = 196/349 (56%), Gaps = 60/349 (17%)

Query: 61  VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
            FL+PYFI+L  CGIP+ +MEL++GQ+   GP+ V  K CP FKG G   +++S  +  Y
Sbjct: 38  AFLIPYFIMLAFCGIPLFFMELSLGQYGSLGPLTVW-KCCPIFKGIGYGMLLVSGLVCIY 96

Query: 121 YNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPS 180
           YNV+IA++L+Y   SF S LPW+HCGN WNT+ C              +L  NL++ V  
Sbjct: 97  YNVIIAWTLFYLFASFTSVLPWEHCGNWWNTESC----LEHRVKDNMGALPVNLTRTV-- 150

Query: 181 KTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLW 240
            +PSEE+                               W  +V  I              
Sbjct: 151 -SPSEEY-------------------------------WNRRVLGI-------------- 164

Query: 241 RFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLI 300
                  Q SSGI   G+ RWEL  C  ++W++V+F L+K V+SSG+V+YFTAT P++++
Sbjct: 165 -------QGSSGIGDPGEVRWELALCLLLAWVIVFFCLFKGVKSSGKVVYFTATFPYIIL 217

Query: 301 FVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNK 360
            V L   +TL+G+  G++++  P+F  L+  +VW +A +QIF S+GI +G ++T +SYNK
Sbjct: 218 IVLLVRGVTLEGALKGIQFYLTPDFHRLASSQVWYDAASQIFYSLGIGFGGLLTMASYNK 277

Query: 361 YNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDG 409
           +NN I  DT+++++ N ITSV  G  IF  +G++ +E    +++V   G
Sbjct: 278 FNNNIYRDTLIITLGNCITSVFAGFAIFSVLGHMAHELGVPVKDVADAG 326

PROT is a high-affinity L-proline transporter that transports L-proline, and may have a role in excitatory neurotransmission. Human PROT is encoded by the SLC6A7 gene, a potential susceptible gene for asthma. PROT is expressed in the brain. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 544

>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the SERT-like Na(+)- and Cl(-)-dependent monoamine transporter subfamily; solute binding domain

 Score =  245 bits (628), Expect = 1e-73
 Identities = 123/351 (35%), Positives = 190/351 (54%), Gaps = 50/351 (14%)

Query: 61  VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
            FL+PY I+L + GIP+ YMELA+GQ+ R+G I    ++CP FKG G + V+I+F++  +
Sbjct: 38  AFLIPYGIMLVVGGIPLFYMELALGQYYRKGAITSWGRICPLFKGIGYAVVLIAFYVDFF 97

Query: 121 YNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPS 180
           YNV+IA+SLYYF  SF   LPW  C N WNT +C+                         
Sbjct: 98  YNVIIAWSLYYFFASFTFNLPWTSCNNSWNTPNCY------------------------- 132

Query: 181 KTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLW 240
                E +   D    C S + S S    +              F  A + Y        
Sbjct: 133 -----EPHWSEDGTVPCRSANQSFSATNISAAEEN---------FTSAALEY-------- 170

Query: 241 RFPHKVLQI--SSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFL 298
            F   VL++  S G+  +G+ RW+++ C F  +++ YF+LWK + +SG+V++FTA  P++
Sbjct: 171 -FERGVLELHVSRGVTDLGNIRWQILLCLFAVYLICYFSLWKGIHTSGKVVWFTALFPYV 229

Query: 299 LIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSY 358
           ++F+ L   +TL GS+ G+ Y+  PNFE L   +VWV+A  Q+F S+G  +G ++ ++SY
Sbjct: 230 VLFILLIRGVTLPGSQNGIEYYLRPNFEALKSAEVWVDAATQVFFSLGPGFGVLLAYASY 289

Query: 359 NKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDG 409
           NK++N +  D +V S IN +TS L G  IF  +G +       IE+V  +G
Sbjct: 290 NKFHNNVYRDALVTSSINCLTSFLSGFVIFSVLGYMACRSGKPIEDVATEG 340

SERT-like Na(+)- and Cl(-)-dependent monoamine transporters, transport monoamine neurotransmitters from synaptic spaces into presynaptic neurons. Members include: the norepinephrine transporter NET, the serotonin transporter SERT , and the dopamine transporter DAT1. These latter may play a role in diseases or disorders including depression, anxiety disorders, and attention-deficit hyperactivity disorder, and in the control of human behavior and emotional states. They belongs to the solute carrier 6 (SLC6) transporter family. Members of this subgroup are uncharacterized. Length = 552

>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter 2; solute-binding domain

 Score =  245 bits (626), Expect = 3e-73
 Identities = 130/369 (35%), Positives = 200/369 (54%), Gaps = 58/369 (15%)

Query: 245 KVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFL 304
           +VL+IS GI+ +G  RWEL  C  ++W++ YF +WK V+S+G+V+YFTAT P+L++ V L
Sbjct: 159 RVLRISDGIEHIGSLRWELALCLLLAWVICYFCIWKGVKSTGKVVYFTATFPYLMLVVLL 218

Query: 305 CFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQ 364
              +TL G+ +G++++  P+   L+D +VW++AG QI             F SY      
Sbjct: 219 IRGVTLPGASLGIQFYLYPDLSRLADPQVWMDAGTQI-------------FFSYA----- 260

Query: 365 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIVD 424
                                   I +G +T               + SYNKYNN    D
Sbjct: 261 ------------------------ICLGCLTA--------------LGSYNKYNNNCYRD 282

Query: 425 TMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPN 484
            + +  +N+ TS + G  IF  +G + YE    I  V   GPGL F+ YP+A++ +PF  
Sbjct: 283 CIALCFLNSGTSFVAGFAIFSILGFMAYEQGVPISEVAESGPGLAFIAYPRAVSMMPFSP 342

Query: 485 FWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGL 544
            WA  FF  ++ L L+SQF  VE +VT++ D +P   ++     E+++L V IVSF  GL
Sbjct: 343 LWACFFFIMIVLLGLDSQFVCVESLVTAMVDMYPEVFRKKNR-RELLILFVSIVSFLVGL 401

Query: 545 PYVTQGGIYFFQLIDHYTAS-TAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLYF 603
             +T+GG+Y FQL D+Y AS   +++VA FE + +AW+YG+D+   N+  M G  P  Y 
Sbjct: 402 IMLTEGGMYVFQLFDYYAASGMCLLFVAIFETLCIAWVYGADRFYDNIEDMIGYRPGPYI 461

Query: 604 RFCWSIAAP 612
           ++CW    P
Sbjct: 462 KYCWLFITP 470

This family includes human GAT2 (hGAT2) which transports gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. hGAT2 is encoded by the SLC6A13 gene, and is similar to mouse GAT-3, and rat GAT2. hGAT2 is expressed in brain, kidney, lung, and testis. hGAT2 is a potential drug target for treatment of epilepsy. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 544

>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain

 Score =  231 bits (591), Expect = 8e-68
 Identities = 126/369 (34%), Positives = 204/369 (55%), Gaps = 60/369 (16%)

Query: 248 QISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFLCFS 307
           Q++ G+++ G  RW L     ++W+LVYF +WK V  +G+V+YF+AT P++++F+     
Sbjct: 198 QMTDGLEKPGQIRWPLAITLAIAWVLVYFCIWKGVGWTGKVVYFSATYPYIMLFILFFRG 257

Query: 308 LTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQIIV 367
           +TL G++ G+ ++  PNF  LSD +VW++A  QIF S    YG                 
Sbjct: 258 VTLPGAKEGILFYITPNFSKLSDSEVWLDAATQIFFS----YG----------------- 296

Query: 368 DTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIVDTMV 427
                          +G+   I +G                    SYN ++N +  D+++
Sbjct: 297 ---------------LGLGSLIALG--------------------SYNPFHNNVYRDSII 321

Query: 428 VSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPNFWA 487
           V  IN+ TS+  G  IF  +G + +  +  I +V   GPGL F+ YP+A+ +LP    WA
Sbjct: 322 VCCINSCTSMFAGFVIFSIVGFMAHVTKRPIADVAASGPGLAFLAYPEAVTQLPISPLWA 381

Query: 488 VLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGLPYV 547
           VLFF  LL L ++SQF  VE  +T++ D FPR ++      EI + VVCIVS+  GL  +
Sbjct: 382 VLFFSMLLMLGIDSQFCTVEGFITALVDEFPRLLRNR---REIFIAVVCIVSYLIGLSNI 438

Query: 548 TQGGIYFFQLIDHYTAS-TAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLYFRFC 606
           TQGGIY F+L D+Y+AS  +++++ FFE V+++W YG ++   N+  M G  P ++++ C
Sbjct: 439 TQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIEEMVGYRPCIWWKLC 498

Query: 607 WSIAAPLLI 615
           WS   P+++
Sbjct: 499 WSFFTPIIV 507

GAT1 transports gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. Human GAT1 is encoded by the SLC6A1 gene. GAT1 is expressed in brain and peripheral nervous system. The antiepileptic drug, Tiagabine, inhibits GAT1. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 598

>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain

 Score =  220 bits (562), Expect = 2e-63
 Identities = 124/348 (35%), Positives = 192/348 (55%), Gaps = 34/348 (9%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
           FL+PY ++L L GIPI ++E+++GQF  +GP+ V  K  P  +G GI+ +IIS  ++ YY
Sbjct: 39  FLIPYLMMLALAGIPIFFLEVSLGQFASQGPVSVW-KAIPALQGCGIAMLIISVLIAIYY 97

Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSK 181
           N+++ Y+L+Y   S    LPW  C N WNT  C     L             L   + S 
Sbjct: 98  NIIMCYTLFYLFASLVEVLPWASCNNPWNTPECKDKDKLL------------LDSCIISD 145

Query: 182 TPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWR 241
            P  +  N     + C +   +++ V  T    K         F+     Y         
Sbjct: 146 HPKIQIKN----STFCMTAYPNLTMVNFTSVGNK--------TFVSGSEEY--------- 184

Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF 301
           F + VL+IS+GI+  G+ RW L  C F++W++VY +L K ++SSG+V+YFTAT P++++ 
Sbjct: 185 FKYNVLKISAGIEYPGEIRWPLALCLFLAWVIVYASLAKGIKSSGKVVYFTATFPYVVLV 244

Query: 302 VFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKY 361
           + L   +TL G+  G+ YF  P +E L+D  VW +A  QIF S+  A+G +IT SSYNK+
Sbjct: 245 ILLIRGVTLPGAGAGIWYFITPKWEKLNDATVWKDAATQIFFSLSAAWGGLITLSSYNKF 304

Query: 362 NNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDG 409
           +N    DT++V+  N+ TS+  G  IF  IG + +E + +IE+V   G
Sbjct: 305 HNNCYRDTLIVTCTNSATSIFAGFVIFSVIGFMAHELKVNIESVADQG 352

GlyT2 (also called NET1) is a membrane-bound transporter that re-uptakes glycine from the synaptic cleft. Human GlyT2 is encoded by the SLC6A5 gene. GlyT2 is expressed in brain and spinal cord. GlyT2 may play a role in pain, and in spasticity. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 606

>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding domain

 Score =  218 bits (557), Expect = 5e-63
 Identities = 122/378 (32%), Positives = 203/378 (53%), Gaps = 17/378 (4%)

Query: 245 KVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFL 304
           + L I+  I+  G  +W L+ C    W +VY  + + + ++G+V+YFTA  P+L++ +FL
Sbjct: 149 QTLNITPDINDSGSIQWWLLLCLAACWAIVYLCVIRGIETTGKVIYFTALFPYLVLTIFL 208

Query: 305 CFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQ 364
              LTL G+  GL Y F PN  +L + +VW++A  QIF S+ +A+G  I F+SYN   N 
Sbjct: 209 IRGLTLPGATEGLIYLFTPNMHILQNPRVWLDAATQIFFSLSLAFGGHIAFASYNPPRND 268

Query: 365 IIVDTMVVSIINTITSVLIGVFIFITIG-NITYEHETSIENVILDGFISSYNKYNNQIIV 423
              D + ++++N++TS+   + +F  +G   T ++E  ++  IL   I+ ++     I  
Sbjct: 269 CEKDAVTIALVNSMTSLYASIPVFSVLGFKATNDYEHCLDRNILS-LINEFDFPEQSISR 327

Query: 424 D--TMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLP 481
           D    V+  +N      +          +         +    GPGL F+V+ +A+  +P
Sbjct: 328 DNYPSVLMHLNATWPERVAQL------PLKACLLEDFLDKSASGPGLAFIVFTEAVLHMP 381

Query: 482 FPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDG--FPRWIKRYLVCHEIVVLVVCIVS 539
               WAVLFF  L  L L+S F  VE V+T + D    PRW+ +     E +  +VC+V 
Sbjct: 382 GAQVWAVLFFGMLFTLGLSSMFGNVEGVITPLLDVGVLPRWVPK-----EALTGLVCLVC 436

Query: 540 FFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFP 599
           F   L +  Q G Y+ ++ D + AS  ++ +AFFEVV V ++YG  +   ++  MTG+ P
Sbjct: 437 FLSALCFTLQSGNYWLEIFDSFAASLNLLVIAFFEVVGVVYVYGIKRFCDDIEWMTGRRP 496

Query: 600 SLYFRFCWSIAAPLLILI 617
           SLY+R  W + +PLL+L 
Sbjct: 497 SLYWRLTWRVVSPLLLLT 514

B0AT3 (also called Xtrp2, XT2) transports glycine. Human B0AT3 is encoded by the SLC6A18 gene. B0AT3 is expressed in the kidney. Mutations in the SLC6A18 gene may contribute to the autosomal recessive disorder iminoglycinuria and its related disorder hyperglycinuria. SLC6A18 or its neighboring genes are associated with increased susceptibility to myocardial infarction. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 576

>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family

 Score =  215 bits (549), Expect = 2e-62
 Identities = 91/206 (44%), Positives = 128/206 (62%), Gaps = 5/206 (2%)

Query: 412 SSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFV 471
           +SYNK++N    D ++VS IN+ TS L G  IF  +G +  E    I  V   GPGL F+
Sbjct: 255 ASYNKFHNNCYRDALIVSFINSATSFLAGFVIFSVLGFMAQEQGVPISEVAESGPGLAFI 314

Query: 472 VYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPR-WIKRYLVCHEI 530
            YP+A+  LP   FW+VLFF  L+ L L+SQF  VE ++T++ D FP    KR     E+
Sbjct: 315 AYPEAVTMLPLSPFWSVLFFLMLITLGLDSQFGGVEGIITALVDEFPILLRKR----REL 370

Query: 531 VVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARN 590
             L+VC++SF  GL  VT+GGIY F L D+Y AS  +++V FFE +AVAW+YG D+   +
Sbjct: 371 FTLIVCVISFLIGLILVTEGGIYVFTLFDYYAASFGLLFVVFFECIAVAWVYGLDRFYDD 430

Query: 591 VHHMTGKFPSLYFRFCWSIAAPLLIL 616
           +  M G  P L++R CW   +PL++L
Sbjct: 431 IKEMLGFRPGLFWRLCWKFVSPLILL 456

Length = 506

>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain

 Score =  215 bits (549), Expect = 4e-62
 Identities = 124/348 (35%), Positives = 192/348 (55%), Gaps = 58/348 (16%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
           FL+PY + L + G+P+ YMELA+GQ+ R G   V  K+CP FKG G + ++I+ ++  YY
Sbjct: 39  FLIPYTLFLIIAGMPLFYMELALGQYNREGAATVW-KICPCFKGVGYAVILIALYVGFYY 97

Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSK 181
           NV+IA+SLYY  +SF S+LPW  CGN WN+ +C  P  L        S+L N +K     
Sbjct: 98  NVIIAWSLYYLFSSFTSELPWTTCGNVWNSPNCTDPKLLNA------SVLGNGTK----- 146

Query: 182 TPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWR 241
                                                  SK +   A   Y  G+ +L  
Sbjct: 147 --------------------------------------YSKYKLTPAAEFYERGVLHL-- 166

Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF 301
             H+    S+GI  +G  RW+L  C FV  I+++F+LWK V++SG+V++ TAT+P++++F
Sbjct: 167 --HE----SAGIHDLGLPRWQLTLCLFVVVIVLFFSLWKGVKTSGKVVWITATLPYVVLF 220

Query: 302 VFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKY 361
           V L   +TL G+  G+  +   +F+ L +  VW++A  QIF S+G  +G +I F+SYNK+
Sbjct: 221 VLLIHGVTLPGAFNGINAYLHIDFKRLKEATVWIDAATQIFYSLGAGFGVLIAFASYNKF 280

Query: 362 NNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDG 409
           +N    D ++ S IN +TS + G  IF  +G + +EH+  IE+V  +G
Sbjct: 281 DNNCYRDALLTSTINCVTSFISGFAIFSILGYMAHEHKVKIEDVATEG 328

NET (also called NAT1, NET1), is a transmembrane transporter that transports the neurotransmitter norepinephrine from synaptic spaces into presynaptic neurons. Human NET is encoded by the SLC6A2 gene. NET is expressed in brain, peripheral nervous system, adrenal gland, and placenta. NET may play a role in diseases or disorders including depression, orthostatic intolerance, anorexia nervosa, cardiovascular diseases, alcoholism, and attention-deficit hyperactivity disorder. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 560

>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid transporter SIT1; solute-binding domain

 Score =  215 bits (549), Expect = 5e-62
 Identities = 113/382 (29%), Positives = 206/382 (53%), Gaps = 25/382 (6%)

Query: 245 KVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFL 304
           + L IS  I++ G  +WE   C  ++W++VY  + +   S+G+V+Y TAT+P+L++ ++L
Sbjct: 151 ETLNISPSIEESGGIQWEQALCLILAWLVVYLCILRGTESTGKVVYVTATLPYLVLIIYL 210

Query: 305 CFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQ 364
              LTL G+  GL+Y F P  E L++ K W+NA  QIF S+G+ +G++I F+SYN+ +N 
Sbjct: 211 IRGLTLHGAANGLKYMFTPKLEQLANPKTWINAATQIFFSLGLGFGSLIAFASYNEPSNN 270

Query: 365 IIVDTMVVSIINTITSVLIGVFIFITIG-NITYEHETSIENVIL---------DGFISSY 414
                ++VS+IN+ TS+   +  F   G   T+ +E  ++ VIL         +G I+  
Sbjct: 271 CERHAIIVSLINSGTSIFASIVTFSIYGFKATFNYENCLKKVILLLTNTFDLEEGSITMS 330

Query: 415 NKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYP 474
           N       ++ M   +          +   +   ++  E +T+++     G GL F+VY 
Sbjct: 331 N-------LEDMKKYLNAAYPQEYAQIAPQLKNCSLEKELDTAVQ-----GTGLAFIVYS 378

Query: 475 QALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLV 534
           +A+  +     W+VL+FF LL L + S       ++T + D   + I  +L   E +  +
Sbjct: 379 EAIKNMEVSQLWSVLYFFMLLMLGIGSMLGNTAAILTPLTDS--KIISSHL-PKEAISGL 435

Query: 535 VCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHM 594
           VC ++   GL +  + G Y+F + + Y A+ +++ +   E +AV ++YG  +  +++  M
Sbjct: 436 VCFINCIIGLVFTMEAGNYWFDIFNDYAATLSLLLIVLVETIAVCYVYGLRRFEKDLEAM 495

Query: 595 TGKFPSLYFRFCWSIAAPLLIL 616
           TG  PS Y++  W+  +PLLI+
Sbjct: 496 TGHKPSWYWKIMWAFTSPLLII 517

SIT1 (also called XTRP3, XT3, IMINO) transports imino acids, such as proline, pipecolate, MeAIB, and sarcosine. It has weak affinity for neutral amino acids such as phenylalanine. Human SIT1 is encoded by the SLC6A20 gene. SIT1 is expressed in brain, kidney, small intestine, thymus, spleen, ovary, and lung. SLC6A20 is a candidate gene for the rare disorder iminoglycinuria. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 576

>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain

 Score =  213 bits (545), Expect = 3e-61
 Identities = 116/351 (33%), Positives = 186/351 (52%), Gaps = 43/351 (12%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
           FL+PY I+L L G+P+ ++E ++GQF   GPI V  +  P  +G GI+ V++S F+S YY
Sbjct: 39  FLIPYTIMLALAGLPLFFLECSLGQFASLGPISVW-RAVPLLQGVGITMVLVSTFVSIYY 97

Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSK 181
           NV+IAYSLYY   SF+S LPW  C + W  ++C            + S + + +  + + 
Sbjct: 98  NVIIAYSLYYMFASFQSPLPWSDCSS-WADENC------------STSPITHCNVSLANN 144

Query: 182 TPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWR 241
              E    +     TC + S           P ++ +W  KV                  
Sbjct: 145 GIHENKSWVDSNNLTCINISIIYQPGQL---PSEQ-YW-DKV------------------ 181

Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF 301
                LQ SSG+D+ G   W L  C  ++WI+V  AL+K ++SSG+V+YFTA  P++++ 
Sbjct: 182 ----ALQRSSGMDETGPIVWYLALCLLLAWIIVGAALFKGIKSSGKVVYFTALFPYVVLL 237

Query: 302 VFLCFSLTLDGSEIGLRYFF--LPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYN 359
           + L    TL+G++ G+ Y+     N   L + +VW +A  QIF S+ +A+G ++  SSYN
Sbjct: 238 ILLVRGATLEGAKDGIEYYIGSQSNLTKLMEAEVWKDAATQIFYSLSVAWGGLVALSSYN 297

Query: 360 KYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGF 410
           K++N    D +VV + N +TSV  G  IF  +G++ +  +  +  V+  GF
Sbjct: 298 KFHNNCFSDAIVVCVTNCLTSVFAGFAIFSVLGHMAHVLKKPVSEVVDSGF 348

ATB0+ (also known as the beta-alanine carrier) is a transmembrane transporter with a broad substrate specificity; it can transport non-alpha-amino acids such as beta-alanine with low affinity, and can transport dipolar and cationic amino acids such as leucine and lysine, with a higher affinity. It may have a role in the absorption of essential nutrients and drugs in the distal regions of the human gastrointestinal tract. Human ATB0+ is encoded by the SLC6A14 gene. ATB0+ is expressed in the lung, trachea, salivary gland, mammary gland, stomach, and pituitary gland. ATB0+ may play a role in obesity, and its upregulation may have a pathogenic role in colorectal cancer. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 601

>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain

 Score =  209 bits (534), Expect = 8e-60
 Identities = 121/382 (31%), Positives = 205/382 (53%), Gaps = 23/382 (6%)

Query: 247 LQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFLCF 306
           L ISS I + G   W++  C   +W++V  A+ K ++SSG+++YF++  P++++  FL  
Sbjct: 152 LNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKIMYFSSLFPYVVLICFLIR 211

Query: 307 SLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQII 366
           +L L+GS  G+R+ F P  E++ + KVW  A  Q+F ++G+ +G VI FSSYNK +N   
Sbjct: 212 ALLLNGSVDGIRHMFTPKLEIMLEPKVWREAATQVFFALGLGFGGVIAFSSYNKRDNNCH 271

Query: 367 VDTMVVSIINTITSVLIGVFIFITIG---NITYEHETSIENVILDGFISSYNKYNNQIIV 423
            D ++VS IN  TSVL  + +F  +G   N+  E      +  +   +   N  +  II 
Sbjct: 272 FDAVLVSFINFFTSVLATLVVFAVLGFKANVINEKCIIQNSEKIIKLLKMGN-LSQDIIP 330

Query: 424 DTMVVSII-----NTITSVLIGV----FIFITIGNITYEHETSIENVILDGPGLIFVVYP 474
             +  S I     N +  ++  V    F  + + +   E E    N  + G GL F+ + 
Sbjct: 331 HHINFSSITAEDYNLVYDIIQKVKEEEFPALGLKSCQIEDEL---NKAVQGTGLAFIAFT 387

Query: 475 QALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLV 534
           +A+   P   FW+V+FF  L+ L L S F  +E ++T I D F        V  EI+ ++
Sbjct: 388 EAMTHFPASPFWSVMFFLMLVNLGLGSMFGTIEGIITPIVDTFK-------VRKEILTVI 440

Query: 535 VCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHM 594
            C+++F  GL +V + G YF  + D Y+A+  ++ V   E +AV+++YG DK   ++  M
Sbjct: 441 CCLLAFCIGLIFVQRSGNYFVTMFDDYSATLPLLIVVILENIAVSFVYGIDKFMEDLKDM 500

Query: 595 TGKFPSLYFRFCWSIAAPLLIL 616
            G  P+ Y+ + W   +PL++L
Sbjct: 501 LGFTPNRYYYYMWKYISPLVLL 522

SBAT1 (also called B0AT2, v7-3, NTT7-3) is a high-affinity Na(+)-dependent transporter for large neutral amino acids, including leucine, isoleucine, valine, proline and methionine. Human SBAT1 is encoded by the SLC6A15 gene, a susceptibility gene for major depression. SBAT1 is expressed in brain, and may have a role in transporting neurotransmitter precursors into neurons. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 580

>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter 2; solute-binding domain

 Score =  207 bits (527), Expect = 4e-59
 Identities = 109/348 (31%), Positives = 176/348 (50%), Gaps = 63/348 (18%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
           F +PY I LF CGIP+ ++E A+GQ+T +G +    K+CP F+G G +S +I   ++ YY
Sbjct: 39  FFIPYLIFLFTCGIPVFFLETALGQYTSQGGVTCWRKICPLFEGIGYASQVIVALLNFYY 98

Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSK 181
            +++A++L+Y   SF  +LPW  C + WNT++C                           
Sbjct: 99  IIVLAWALFYLFNSFTWELPWSSCNHTWNTENCV-------------------------- 132

Query: 182 TPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWR 241
               EF   +  ++   +  ++ S V         + W  +V      +  S GI ++  
Sbjct: 133 ----EFQKRNYSVNV--TLENATSPV--------IEFWERRV------LRISDGIEHI-- 170

Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF 301
                          G  RWEL  C  ++W++ YF +WK V+S+G+V+YFTAT P+L++ 
Sbjct: 171 ---------------GSLRWELALCLLLAWVICYFCIWKGVKSTGKVVYFTATFPYLMLV 215

Query: 302 VFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKY 361
           V L   +TL G+ +G++++  P+   L+D +VW++AG QIF S  I  G +    SYNKY
Sbjct: 216 VLLIRGVTLPGASLGIQFYLYPDLSRLADPQVWMDAGTQIFFSYAICLGCLTALGSYNKY 275

Query: 362 NNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDG 409
           NN    D + +  +N+ TS + G  IF  +G + YE    I  V   G
Sbjct: 276 NNNCYRDCIALCFLNSGTSFVAGFAIFSILGFMAYEQGVPISEVAESG 323

This family includes human GAT2 (hGAT2) which transports gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. hGAT2 is encoded by the SLC6A13 gene, and is similar to mouse GAT-3, and rat GAT2. hGAT2 is expressed in brain, kidney, lung, and testis. hGAT2 is a potential drug target for treatment of epilepsy. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 544

>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain

 Score =  201 bits (514), Expect = 3e-57
 Identities = 86/206 (41%), Positives = 125/206 (60%), Gaps = 3/206 (1%)

Query: 412 SSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFV 471
           SSYNK++N    D ++ S IN +TS   G  IF  +G + ++    IE V  +GPGL+F+
Sbjct: 273 SSYNKFHNNCYRDALITSSINCLTSFFSGFVIFSVLGYMAHKQNVDIEVVATEGPGLVFI 332

Query: 472 VYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIV 531
           VYP+A+A LP   FWA++FF  L+ L L+S F  +E V+T + D FP  + +     E+ 
Sbjct: 333 VYPEAIATLPGSTFWAIIFFLMLITLGLDSTFGGLEAVITGLCDEFPPVLGKR---RELF 389

Query: 532 VLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNV 591
           VL V I+ F   LP VT GGIY   L+D Y A T++++V F E VAV+W YG D+ + ++
Sbjct: 390 VLGVVIICFLLALPTVTYGGIYVVTLLDRYAAGTSILFVVFLEAVAVSWFYGVDRFSDDI 449

Query: 592 HHMTGKFPSLYFRFCWSIAAPLLILI 617
             M G  P LY+R CW   +P+ +L 
Sbjct: 450 EEMLGFRPGLYWRVCWKFISPIFLLF 475

This subgroup represents the solute-binding domain of transmembrane transporters that transport monoamine neurotransmitters from synaptic spaces into presynaptic neurons. Members include: NET which transports norepinephrine, SERT which transports serotonin, and DAT1 which transports dopamine. These transporters may play a role in diseases including depression, anxiety disorders, attention-deficit hyperactivity disorder, and in the control of human behavior and emotional states. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 539

>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

 Score =  199 bits (508), Expect = 3e-56
 Identities = 112/338 (33%), Positives = 172/338 (50%), Gaps = 62/338 (18%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
           F+ PYFI+L  CGIP+ +MEL+ GQF  +G +GV  ++ P FKG G   +++S ++  YY
Sbjct: 55  FMFPYFIMLVFCGIPLFFMELSFGQFASQGCLGVW-RVSPMFKGVGYGMMVVSTYIGIYY 113

Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHC---WVPPTLTGEDLGAVSLLQNLSKPV 178
           NV+I  + YYF  S    LPW +C N WNT  C                 +++ NL++ +
Sbjct: 114 NVVICIAFYYFFMSMTRVLPWTYCNNPWNTPDCAGVLSTNRSNATFANMSAVVSNLTELL 173

Query: 179 ----PSKTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSI 234
                  +PSEE+                                               
Sbjct: 174 NRTLKRTSPSEEY----------------------------------------------- 186

Query: 235 GIGNLWRFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTAT 294
                WR    VL IS  I   G+ R  L+ C  VSW++V+  L + V+SSG+V+YFTAT
Sbjct: 187 -----WR--RYVLNISDDIGNFGEVRLPLLGCLGVSWLVVFLCLIRGVKSSGKVVYFTAT 239

Query: 295 IPFLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVIT 354
            P++++ +     +TL+G+  G+ Y+  P ++ + D KVW +A +QIF S+G A+G +IT
Sbjct: 240 FPYVVLTILFIRGITLEGAISGIMYYLTPQWDKILDAKVWGDAASQIFYSLGCAWGGLIT 299

Query: 355 FSSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIG 392
            +SYNK++N    D++++SI N  TSV  G  IF  +G
Sbjct: 300 MASYNKFHNNCYRDSIIISITNCATSVYAGFVIFSILG 337

GlyT1 is a membrane-bound transporter that re-uptakes glycine from the synaptic cleft. Human GlyT1 is encoded by the SLC6A9 gene. GlyT1 is expressed in brain, pancreas, uterus, stomach, spleen, liver, and retina. GlyT1 may play a role in schizophrenia. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 585

>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids transporter, B0AT1; solute-binding domain

 Score =  199 bits (507), Expect = 4e-56
 Identities = 116/386 (30%), Positives = 204/386 (52%), Gaps = 33/386 (8%)

Query: 245 KVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFL 304
           + L  S+ ID  G  +W +V C   +W ++Y    + + ++G+ +Y T+T+P+L++ +FL
Sbjct: 148 ETLNTSTSIDDSGGIQWWMVLCLACAWGVLYVCTIRGIETTGKAVYVTSTLPYLVLTIFL 207

Query: 305 CFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQ 364
              LTL GS  G+++ F P+   L++   W++AGAQ+F S  +A+G +I+FSSYN  +N 
Sbjct: 208 IRGLTLKGSVNGIKFLFTPDINELANPVTWLDAGAQVFYSFSLAFGGLISFSSYNSVHNN 267

Query: 365 IIVDTMVVSIINTITSVLIGVFIFITIG-NITYEHETSIENVIL---------DGFISSY 414
              D +++S+IN  TS+     I+  IG   T   +   +  IL         +G I+  
Sbjct: 268 CEKDAVIISVINGFTSIYAATVIYSIIGFRATERFDDCFDGNILTLINAFDLPEGNITQD 327

Query: 415 NKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYP 474
           N  + Q          +N+    +I      T     +  E       ++G GL F+V+ 
Sbjct: 328 NYQDMQ--------QSLNSTDPDIISSLSLQTCDLNNFLSEG------VEGTGLAFIVFT 373

Query: 475 QALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGF---PRWIKRYLVCHEIV 531
           +A+ K+P    W+VLFF  L CL L+S F  +E V+  +QD       W K      EI+
Sbjct: 374 EAITKMPLSPLWSVLFFIMLFCLGLSSMFGNMEGVLVPLQDLKVIPKSWPK------EII 427

Query: 532 VLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNV 591
             ++C+VSF  GL +V   G Y+  L D +  S  ++ +AF E+ +V ++YG D+  +++
Sbjct: 428 TGLICLVSFLIGLIFVLGSGNYWLALFDSFAGSIPLLIIAFCEMFSVVYVYGIDRFNKDI 487

Query: 592 HHMTGKFPSLYFRFCWSIAAPLLILI 617
             M G  P+++++  W + +PL++L+
Sbjct: 488 EFMIGHKPNIFWQATWRVISPLIMLV 513

B0AT1 (also called HND) transports neutral amino acids. Human B0AT1 is encoded by the SLC6A19 gene. B0AT1 is expressed primarily in the kidney and intestine; it requires collectrin for expression in the kidney, and angiotensin-converting enzyme 2 for expression in the intestine. Interaction with these two proteins implicates B0AT1 in more complex processes such as glomerular structure, exocytosis, and blood pressure control. The autosomal recessive disorder, Hartnup disorder, is caused by mutations in B0AT1. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 581

>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain

 Score =  194 bits (496), Expect = 1e-54
 Identities = 85/206 (41%), Positives = 134/206 (65%), Gaps = 3/206 (1%)

Query: 411 ISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIF 470
           ++SYNK+NN I  DT+++++ N ITSV  G  IF  +G++ +E    +++V   GPGL F
Sbjct: 272 MASYNKFNNNIYRDTLIITLGNCITSVFAGFAIFSVLGHMAHELGVPVKDVADAGPGLAF 331

Query: 471 VVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEI 530
           V YP+AL  LP   FW++LFFF LL L L+SQFA++E +VT++ D FP  +++Y      
Sbjct: 332 VAYPEALTLLPVSPFWSILFFFMLLTLGLDSQFAMLETIVTAVTDEFPYLLRKY---KTW 388

Query: 531 VVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARN 590
            + ++C+  +  GL  VT GG+Y+  L+D Y+AS  +M +A F  +A++W+YG  +  R+
Sbjct: 389 FLGLICVGMYLLGLLLVTDGGMYWLTLMDWYSASFGLMVLALFMCLAISWVYGIQRFCRD 448

Query: 591 VHHMTGKFPSLYFRFCWSIAAPLLIL 616
           +  M G  P+LYF+ CW   +P L+L
Sbjct: 449 IKMMIGFEPNLYFKACWMFISPALLL 474

PROT is a high-affinity L-proline transporter that transports L-proline, and may have a role in excitatory neurotransmission. Human PROT is encoded by the SLC6A7 gene, a potential susceptible gene for asthma. PROT is expressed in the brain. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 544

>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain

 Score =  195 bits (496), Expect = 1e-54
 Identities = 114/348 (32%), Positives = 180/348 (51%), Gaps = 59/348 (16%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
           FLVPY   + + G+P+ YMELA+GQF R G  GV  K+CP FKG G + ++IS ++  +Y
Sbjct: 39  FLVPYLFFMVIAGMPLFYMELALGQFNREGAAGVW-KICPIFKGVGFTVILISLYVGFFY 97

Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSK 181
           NV+IA++L+Y  +SF  +LPW HC N WN+ +C       G+  G  S L +  K     
Sbjct: 98  NVIIAWALFYLFSSFTGELPWIHCNNSWNSPNCSDAH--PGDSSGDSSGLNDTYK----T 151

Query: 182 TPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWR 241
           TP+ E++   +        S  I D+G    PR                         W+
Sbjct: 152 TPAAEYF---ERGVLHLHESHGIHDLGP---PR-------------------------WQ 180

Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF 301
                                L +C  V  +L+YF+LWK V++SG+V++ TAT+P++++ 
Sbjct: 181 ---------------------LTSCLVVVIVLLYFSLWKGVKTSGKVVWITATMPYVVLT 219

Query: 302 VFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKY 361
             L   +TL G+  G++ +   +F  L +  VW++A  QI  S+G+ +G +I FSSYNK+
Sbjct: 220 ALLLRGVTLPGAIDGIKAYLSVDFLRLCEASVWIDAATQICFSLGVGFGVLIAFSSYNKF 279

Query: 362 NNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDG 409
            N    D ++ + IN++TS   G  +F  +G +  +H   I +V  DG
Sbjct: 280 TNNCYRDAIITTSINSLTSFFSGFVVFSFLGYMAQKHNVPIGDVAKDG 327

DAT1 (also called DAT), is a plasma membrane transport protein that functions at the dopaminergic synapses to transport dopamine from the extracellular space back into the presynaptic nerve terminal. Human DAT1 is encoded by the SLC6A3 gene, and is expressed in the brain. DAT1 may play a role in diseases or disorders related to dopaminergic neurons, including attention-deficit hyperactivity disorder (ADHD), Tourette syndrome, Parkinson's disease, alcoholism, drug abuse, schizophrenia, extraversion, and risky behavior. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 555

>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter transporter 4, and related proteins; solute-binding domain

 Score =  194 bits (495), Expect = 1e-54
 Identities = 116/373 (31%), Positives = 189/373 (50%), Gaps = 49/373 (13%)

Query: 245 KVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFL 304
           + L ISS I + G   W++  C   +W++V  A+ K ++SSG+++YF++  P++++  FL
Sbjct: 150 EALNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKIMYFSSLFPYVVLACFL 209

Query: 305 CFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQ 364
              L L+GS  G+R+ F P  E++ + KVW  A  Q+F ++G+ +G VI FSSYNK +N 
Sbjct: 210 VRGLLLNGSVDGIRHMFTPKLEIMLEPKVWREAATQVFFALGLGFGGVIAFSSYNKRDNN 269

Query: 365 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIVD 424
              D ++VS IN  TSVL  + +F  +G         I+ V  + F +            
Sbjct: 270 CHFDAVLVSFINFFTSVLATLVVFAVLG-------FKIQKVKEEEFSA------------ 310

Query: 425 TMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPN 484
                               + + +   E E    +  + G GL F+ + +A+   P   
Sbjct: 311 --------------------LGLDSCLIEDEL---DKAVQGTGLAFIAFTEAMTHFPASP 347

Query: 485 FWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGL 544
           FW+V+FF  L+ L L S F  +E + T I D F        V  EI+ ++ C+ +F  GL
Sbjct: 348 FWSVMFFLMLVNLGLGSMFGTIEGITTPIVDTFK-------VRKEILTVICCLFAFLIGL 400

Query: 545 PYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLYFR 604
            +V + G YF  + D Y+A+  ++ V   E +AVAWIYG  K   ++  M G  PS Y+ 
Sbjct: 401 IFVQRSGNYFVTMFDDYSATLPLLIVVILENIAVAWIYGIKKFMEDLKDMLGFRPSRYYY 460

Query: 605 FCWSIAAPLLILI 617
           + W   +PL +L+
Sbjct: 461 YMWKYISPLCLLV 473

This subgroup includes the solute-binding domain of NTT4 (also called XT1) and SBAT1 (also called B0AT2, v7-3, NTT7-3); both these proteins can transport neutral amino acids. Human SBAT1 is encoded by the SLC6A15 gene, a susceptibility gene for major depression. SBAT1 is expressed in brain, and may have a role in transporting neurotransmitter precursors into neurons. Human NTT4 is encoded by the SLC6A17 gene. NTT4 is specifically expressed in the nervous system, in synaptic vesicles of glutamatergic and GABAergic neurons, and may play an important role in synaptic transmission. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 530

>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter 4; solute-binding domain

 Score =  192 bits (490), Expect = 2e-53
 Identities = 116/390 (29%), Positives = 194/390 (49%), Gaps = 27/390 (6%)

Query: 245 KVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFL 304
           + L IS+ I + G   W++  C  V+W +V  A+ K ++SSG+V+YF++  P++++  FL
Sbjct: 150 EALDISNSISESGGLNWKMTLCLLVAWSIVGLAMIKGIQSSGKVMYFSSLFPYVVLVCFL 209

Query: 305 CFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQ 364
              L L G+  G+ + F P  + + D +VW  A  Q+F ++G+ +G VI FSSYNK +N 
Sbjct: 210 VRGLLLRGAVDGILHMFTPKLDKMLDPQVWREAATQVFFALGLGFGGVIAFSSYNKQDNN 269

Query: 365 IIVDTMVVSIINTITSVLIGVFIFITIG---NITYEHETSIEN-----------VILDGF 410
              D  +VS IN  TSVL  + +F  +G   NI  E +  +EN           V+    
Sbjct: 270 CHFDAALVSFINFFTSVLATLVVFAVLGFKANIMNE-KCVVENAEKILGYLNTNVLSHDL 328

Query: 411 ISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIF 470
           I  +  +++    D     +   I +V    F  + +     E E    +  + G GL F
Sbjct: 329 IPPHVNFSHLTTKDYA--EMYRVIMTVKEDHFKELGLDACLLEDEL---DKSVQGTGLAF 383

Query: 471 VVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEI 530
           + + +A+   P   FW+V+FF  L+ L L S    +  + T I D F        V  E+
Sbjct: 384 IAFTEAMTHFPASPFWSVMFFLMLINLGLGSMIGTMSGITTPIIDTFK-------VRKEV 436

Query: 531 VVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARN 590
             +  CI +F  GL +V + G YF  + D Y+A+  +  V   E +AVAWIYG+ K  + 
Sbjct: 437 FTVGCCIFAFLVGLIFVQRSGNYFVTMFDDYSATLPLTIVVILENIAVAWIYGTKKFMQE 496

Query: 591 VHHMTGKFPSLYFRFCWSIAAPLLILIRIS 620
           +  M G  P  ++ + W   +P+ + + ++
Sbjct: 497 LTEMLGFRPYSFYFYTWKYVSPICMAVLMT 526

NTT4 (also called XT1) transports the neutral amino acids, proline, glycine, leucine, and alanine, and may play an important role in synaptic transmission. Human NTT4 is encoded by the SLC6A17 gene. NTT4 is specifically expressed in the nervous system, in synaptic vesicles of glutamatergic and GABAergic neurons. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 589

>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain

 Score =  187 bits (477), Expect = 2e-52
 Identities = 92/379 (24%), Positives = 169/379 (44%), Gaps = 67/379 (17%)

Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSS-GRVLYFTATIPFLLI 300
           F    LQ+S G   +G F W ++    + W++++F L++ V+    +       + F+L 
Sbjct: 125 FFGDFLQLSDGPFDLGGFVWPILIALVLVWLIIWFILYRGVKKGIEKANKIFMPLLFVLF 184

Query: 301 FVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNK 360
            + +  +LTL G+  GL   F P++  L D KVW+ A  QIF S+ + +G +        
Sbjct: 185 LILVIRALTLPGAADGLNALFTPDWSALLDPKVWIAAYGQIFFSLSVGFGIM-------- 236

Query: 361 YNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQ 420
                                            ITY               +SY    + 
Sbjct: 237 ---------------------------------ITY---------------ASYLPKKSD 248

Query: 421 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKL 480
           +  + ++V+  N+   +L G+ +F  +G +       +  V+  G GL FV +P+A+  +
Sbjct: 249 LTNNALIVAFANSSFEILAGIGVFSILGFMAQAQGVPVSEVVSSGIGLAFVAFPKAINLM 308

Query: 481 -PFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVS 539
            P    + VLFF SL+   L S  +LVEVV++++QD F    ++        V +VC+V 
Sbjct: 309 PPGGALFGVLFFLSLVFAGLTSLISLVEVVISALQDKF-GLSRKK------AVTIVCLVG 361

Query: 540 FFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFP 599
           F   L + T  G+Y   ++DH+  +  ++ V   EV+ V W++G++KL  +++     F 
Sbjct: 362 FLVSLLFATGAGLYLLDIVDHFINNYGIVLVGLVEVIVVGWVFGAEKLREHLNA-VSDFK 420

Query: 600 -SLYFRFCWSIAAPLLILI 617
              ++ F   +  PL++  
Sbjct: 421 VGKWWDFLIKVVTPLVLGY 439

SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. Length = 480

>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain

 Score =  182 bits (462), Expect = 1e-49
 Identities = 86/206 (41%), Positives = 134/206 (65%), Gaps = 5/206 (2%)

Query: 411 ISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIF 470
           +SSYNK++N    DT++V+  N+ TS+  G  IF  IG + +E + +IE+V   GPG+ F
Sbjct: 298 LSSYNKFHNNCYRDTLIVTCTNSATSIFAGFVIFSVIGFMAHELKVNIESVADQGPGIAF 357

Query: 471 VVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEI 530
           VVYP+AL +LP   FWA++FF  LL L L++ FA +E +VTS+ D FP    +YL  H+ 
Sbjct: 358 VVYPEALTRLPLSPFWAIIFFLMLLTLGLDTMFATIETIVTSVSDEFP----KYLRTHKP 413

Query: 531 VVLVVCIVSFF-FGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLAR 589
           +  +VC +SFF  G P +TQGG+Y  QL+D Y AS +++ +A FE+V +++IYG  +   
Sbjct: 414 LFTLVCCISFFIMGFPMITQGGMYMLQLVDTYAASYSLVIIAIFELVGISYIYGLQRFCE 473

Query: 590 NVHHMTGKFPSLYFRFCWSIAAPLLI 615
           ++  M G  P+ ++R CW+   P ++
Sbjct: 474 DIEMMIGFQPNKFWRVCWAFVTPTIL 499

GlyT2 (also called NET1) is a membrane-bound transporter that re-uptakes glycine from the synaptic cleft. Human GlyT2 is encoded by the SLC6A5 gene. GlyT2 is expressed in brain and spinal cord. GlyT2 may play a role in pain, and in spasticity. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 606

>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain

 Score =  181 bits (460), Expect = 2e-49
 Identities = 84/210 (40%), Positives = 127/210 (60%), Gaps = 6/210 (2%)

Query: 411 ISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIF 470
           +SSYNK++N    D +VV + N +TSV  G  IF  +G++ +  +  +  V+  G  L F
Sbjct: 293 LSSYNKFHNNCFSDAIVVCVTNCLTSVFAGFAIFSVLGHMAHVLKKPVSEVVDSGFDLAF 352

Query: 471 VVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEI 530
           + YP+ALAKLP    W++LFFF LL L L+SQFA +E + T+IQD FP+ +K+       
Sbjct: 353 IAYPEALAKLPISPLWSILFFFMLLTLGLDSQFAGIETITTTIQDAFPKVMKKK---RIP 409

Query: 531 VVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARN 590
           + L VCI+ F  GLP VTQ GIY+  LIDH+ A   +++ A  E++ + WIYG ++   +
Sbjct: 410 ITLGVCIILFLLGLPCVTQAGIYWVNLIDHFCAGWGILFAAVLELIGIIWIYGGNRFIED 469

Query: 591 VHHMTGKFPS---LYFRFCWSIAAPLLILI 617
           +  M GK      L++R CW    P+L++ 
Sbjct: 470 IEMMIGKKSWIFWLWWRACWFFITPVLLIA 499

ATB0+ (also known as the beta-alanine carrier) is a transmembrane transporter with a broad substrate specificity; it can transport non-alpha-amino acids such as beta-alanine with low affinity, and can transport dipolar and cationic amino acids such as leucine and lysine, with a higher affinity. It may have a role in the absorption of essential nutrients and drugs in the distal regions of the human gastrointestinal tract. Human ATB0+ is encoded by the SLC6A14 gene. ATB0+ is expressed in the lung, trachea, salivary gland, mammary gland, stomach, and pituitary gland. ATB0+ may play a role in obesity, and its upregulation may have a pathogenic role in colorectal cancer. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 601

>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain

 Score =  180 bits (458), Expect = 2e-49
 Identities = 103/348 (29%), Positives = 165/348 (47%), Gaps = 62/348 (17%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
           FL+PY I LF CGIP+ ++E A+GQ+T +G +    K+CP F+G G +S +I  +++ YY
Sbjct: 40  FLIPYLIFLFTCGIPLFFLETALGQYTSQGGVTAWRKICPIFEGIGYASQVIESYLNVYY 99

Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSK 181
            ++++++L+Y  +SF S LPW  C N WN+  C     L        +  +N + PV   
Sbjct: 100 IIILSWALFYLFSSFTSVLPWATCNNPWNSDLC--VDFLNHSGADNRTPPENATSPV--- 154

Query: 182 TPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWR 241
               EF+            +D I  +G+         W   +  +LA           W 
Sbjct: 155 ---MEFWE-----KRVLGLTDGIHKLGTV-------RWELALCLLLA-----------W- 187

Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF 301
                                 + C F         +WK V+S+G+V+YFTAT P+L++ 
Sbjct: 188 ----------------------IICYF--------CIWKGVKSTGKVVYFTATFPYLMLV 217

Query: 302 VFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKY 361
           + L   +TL G+  G+ ++  P+   L+D +VW++AG QI  S  I  G +    SYNKY
Sbjct: 218 ILLVRGVTLPGAAEGIIFYLKPDLSRLADPQVWMDAGTQILFSYAICQGCLTALGSYNKY 277

Query: 362 NNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDG 409
            N    D +++  +N+ TS + G  IF  +G +  E    I  V   G
Sbjct: 278 TNNCYRDCIMLCFLNSATSFVAGFAIFSVLGFMAREQGVPISEVAESG 325

BGT1 is a relatively low-affinity transporter of gamma-aminobutyric acid (GABA), and can also transport betaine. GABA is the main inhibitory neurotransmitter within the mammalian CNS. Human BGT1 is encoded by the SLC6A12 gene, and is similar to mouse GAT2. Mouse GAT2 plays a role in transporting GABA across the blood-brain barrier. In addition to being expressed in cells of the central nervous system, BGT1 is expressed in peripheral tissues, including kidney, liver, and heart. An association has been shown between the SLC6A12 gene and the occurrence of aspirin-intolerant asthma, and BGT1 is a drug target for antiepileptic drugs. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 541

>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the SERT-like Na(+)- and Cl(-)-dependent monoamine transporter subfamily; solute binding domain

 Score =  179 bits (455), Expect = 6e-49
 Identities = 89/211 (42%), Positives = 131/211 (62%), Gaps = 8/211 (3%)

Query: 412 SSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFV 471
           +SYNK++N +  D +V S IN +TS L G  IF  +G +       IE+V  +GPGL+FV
Sbjct: 287 ASYNKFHNNVYRDALVTSSINCLTSFLSGFVIFSVLGYMACRSGKPIEDVATEGPGLVFV 346

Query: 472 VYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIV 531
           VYP+AL+ +P   FW++LFF  L+ L L+S F   E ++T++ D FP  IKR+    E+ 
Sbjct: 347 VYPEALSTMPGSTFWSLLFFLMLMTLGLDSSFGGSEAIITALSDEFPI-IKRH---RELF 402

Query: 532 VLVVCIVSFFF--GLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLAR 589
           V   C+ +F+F  GL   TQGGIYFF L+D Y A  +++    FE VAV+WIYG D+  +
Sbjct: 403 VG--CLFAFYFVIGLAMCTQGGIYFFHLLDRYAAGYSILIAVLFEAVAVSWIYGLDRFCQ 460

Query: 590 NVHHMTGKFPSLYFRFCWSIAAPLLILIRIS 620
           ++  M G  P +Y++ CW   AP+ +L  I+
Sbjct: 461 DIKEMLGFRPGIYWKICWKFIAPIFLLFNIT 491

SERT-like Na(+)- and Cl(-)-dependent monoamine transporters, transport monoamine neurotransmitters from synaptic spaces into presynaptic neurons. Members include: the norepinephrine transporter NET, the serotonin transporter SERT , and the dopamine transporter DAT1. These latter may play a role in diseases or disorders including depression, anxiety disorders, and attention-deficit hyperactivity disorder, and in the control of human behavior and emotional states. They belongs to the solute carrier 6 (SLC6) transporter family. Members of this subgroup are uncharacterized. Length = 552

>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family

 Score =  171 bits (435), Expect = 2e-46
 Identities = 71/165 (43%), Positives = 107/165 (64%)

Query: 245 KVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFL 304
           KVL++S GI+ +G  RW L  C  V+W++VYF +WK V+SSG+V+YFTAT P++++ V L
Sbjct: 144 KVLKLSDGIEDLGGLRWPLTLCLLVAWVVVYFCIWKGVKSSGKVVYFTATFPYVVLLVLL 203

Query: 305 CFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQ 364
              +TL G+  G+ ++  P++  L D +VW++A  QIF S+GI +G +I F+SYNK++N 
Sbjct: 204 VRGVTLPGAADGIDFYLTPDWSKLLDPQVWIDAATQIFFSLGIGFGGLIAFASYNKFHNN 263

Query: 365 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDG 409
              D ++VS IN+ TS L G  IF  +G +  E    I  V   G
Sbjct: 264 CYRDALIVSFINSATSFLAGFVIFSVLGFMAQEQGVPISEVAESG 308

Length = 506

>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5; solute-binding domain

 Score =  171 bits (434), Expect = 4e-46
 Identities = 93/380 (24%), Positives = 179/380 (47%), Gaps = 26/380 (6%)

Query: 244 HKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVF 303
            K L+ S  I+  G     L    FV+W LVY  + + ++S+G+ + F   +P++++   
Sbjct: 145 QKTLKASDRIEDGGSLVGHLALSLFVAWCLVYVTMIRGLKSTGKSIIFLVLLPYVILLCL 204

Query: 304 LCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNN 363
           L  SL L+G+  GL +  +     L++  +W  AG Q+  S+G+ +G +IT++SY    N
Sbjct: 205 LIRSLFLEGAFFGLLWLLVAKVSSLANLSIWRVAGGQVLFSLGLGFGTLITYASYMPRKN 264

Query: 364 QIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIV 423
             + D  VV+++N +TS++     F  +G                     +   +     
Sbjct: 265 NCLTDAFVVALVNLLTSLIATPIFFAVMGF--------------------WATVSTHRCC 304

Query: 424 DTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFP 483
           +  V +++                 +    +   + N+ ++GPG  F+ + +A++  P  
Sbjct: 305 EKNVENLLMLGVLPPEAKPPADLSLDPASIYLLWLFNLPMEGPGFAFLAFSEAISLAPGS 364

Query: 484 NFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLV-VCIVSFFF 542
            FWA++FF +LL   L++ F +++ + T +QD F  + K     H  ++ V VC+  F  
Sbjct: 365 AFWAIVFFLALLLAGLSTMFGIMQGIYTPLQDTFSFFRK-----HPKLLTVLVCVGLFLG 419

Query: 543 GLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLY 602
           GL +    G YF  L+D Y     ++++  FE +A+AW YG+ +   ++  + G   S  
Sbjct: 420 GLVFTQPSGSYFRSLLDDYLVPLPIIFIVVFENIALAWAYGAKRFLADLEFLLGGPISSI 479

Query: 603 FRFCWSIAAPLLILIRISLT 622
             + WS  +P+++L     T
Sbjct: 480 VWWLWSYLSPVVLLGLFLWT 499

Human NTT5 is encoded by the SLC6A16 gene. NTT5 is expressed in testis, pancreas, and prostate; its expression is predominantly intracellular, indicative of a vesicular location. Its substrates are unknown. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 543

>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6 subfamily; solute-binding domain

 Score =  160 bits (407), Expect = 2e-43
 Identities = 91/347 (26%), Positives = 157/347 (45%), Gaps = 70/347 (20%)

Query: 261 WELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFLCFSLTLDGSEIGLRYF 320
           + +   +F  W +V+  +++ V S+GRV+Y T  +P +LI + L    +L  +  G+R +
Sbjct: 112 FTVGWLAFT-WFVVWLCVFRGVGSTGRVVYITMGLPIVLIIILLGRGASLPNAGDGIRLY 170

Query: 321 FLPNF-ELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQIIVDTMVVSIINTIT 379
           F     + L+  ++W  A  Q+F S G+ +G     ++Y                     
Sbjct: 171 FATWRGDKLASGEIWQAAAGQVFFSTGVGFG---YMTAY--------------------- 206

Query: 380 SVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIVDTMVVSIINTITSVLI 439
                                           +SYN   +  + D ++++  N++  ++ 
Sbjct: 207 --------------------------------ASYNSKFSNAVQDALIIAGSNSLFEIIA 234

Query: 440 GVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPNFWAVLFFFSLLCLAL 499
           G  +F  +G +       +E   L G  L FV YP+A+A++P  NF+AVLFF +L  L +
Sbjct: 235 GFAVFGIVGYLG--MTPGVEGEALGGFVLGFVTYPEAIAQMPGSNFFAVLFFLTLFLLGI 292

Query: 500 NSQFALVEVVVTSIQD-GFPRWIKRYLVCHEIVVLVVCIVSFFFGLPYVTQGGIYFFQLI 558
           +S FAL+E VVT I D G+ R +KR+ +       VVC VSF   LPY T+ G Y    +
Sbjct: 293 SSAFALLEAVVTLICDSGWGRKVKRWWIA-----TVVCFVSFLLSLPYCTRFGYYLLDAV 347

Query: 559 DHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLYFRF 605
           D + ++ A+++V + E VA   +Y       +V    G     Y+  
Sbjct: 348 DAWISNVALVFVVWAECVAATTVYR----FEDVVDQVGLPAFAYYNV 390

SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, and are involved in regulating neurotransmitter signaling and homeostasis, and are the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. Length = 406

>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain

 Score =  163 bits (413), Expect = 3e-43
 Identities = 76/205 (37%), Positives = 122/205 (59%), Gaps = 4/205 (1%)

Query: 412 SSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFV 471
           SSYNK+ N    D ++ + IN++TS   G  +F  +G +  +H   I +V  DGPGLIF+
Sbjct: 274 SSYNKFTNNCYRDAIITTSINSLTSFFSGFVVFSFLGYMAQKHNVPIGDVAKDGPGLIFI 333

Query: 472 VYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIV 531
           +YP+A+A LP  + WAV+FF  LL L ++S    +E V+T + D F +++ R+    E+ 
Sbjct: 334 IYPEAIATLPLSSVWAVIFFIMLLTLGIDSAMGGMESVITGLIDEF-KFLHRH---RELF 389

Query: 532 VLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNV 591
            L + + +F   L  VT GGIY F L+DH+ A T++++    E + +AW YG  + + ++
Sbjct: 390 TLFIVLSTFLISLFCVTNGGIYVFTLLDHFAAGTSILFGVLIEAIGIAWFYGVGRFSDDI 449

Query: 592 HHMTGKFPSLYFRFCWSIAAPLLIL 616
             M G+ P LY+R CW   +P  +L
Sbjct: 450 EEMIGQRPGLYWRLCWKFVSPCFLL 474

DAT1 (also called DAT), is a plasma membrane transport protein that functions at the dopaminergic synapses to transport dopamine from the extracellular space back into the presynaptic nerve terminal. Human DAT1 is encoded by the SLC6A3 gene, and is expressed in the brain. DAT1 may play a role in diseases or disorders related to dopaminergic neurons, including attention-deficit hyperactivity disorder (ADHD), Tourette syndrome, Parkinson's disease, alcoholism, drug abuse, schizophrenia, extraversion, and risky behavior. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 555

>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain

 Score =  151 bits (383), Expect = 2e-39
 Identities = 79/203 (38%), Positives = 120/203 (59%), Gaps = 2/203 (0%)

Query: 411 ISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIF 470
           + SYN YNN    D +++  +N+ TS + G  IF  +G + YE    I  V   GPGL F
Sbjct: 272 LGSYNNYNNNCYRDCIMLCCLNSGTSFVAGFAIFSVLGFMAYEQGVPIAEVAESGPGLAF 331

Query: 471 VVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEI 530
           + YP+A+  +P    WA LFF  L+ L L+SQF  VE +VT++ D +P+  +R     E+
Sbjct: 332 IAYPKAVTMMPLSPLWATLFFMMLIFLGLDSQFVCVESLVTAVVDMYPKVFRRGYR-REL 390

Query: 531 VVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTAS-TAVMYVAFFEVVAVAWIYGSDKLAR 589
           ++L + IVS+F GL  +T+GG+Y FQL D Y AS   +++VA FE + + W+YGS++   
Sbjct: 391 LILALSIVSYFLGLVMLTEGGMYIFQLFDSYAASGMCLLFVAIFECICIGWVYGSNRFYD 450

Query: 590 NVHHMTGKFPSLYFRFCWSIAAP 612
           N+  M G  P    ++CW +  P
Sbjct: 451 NIEDMIGYRPLSLIKWCWMVITP 473

This family includes human GAT3 (hGAT3) a high-affinity transporter of gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. hGAT3 is encoded by the SLC6A11 gene, and is similar to mouse GAT4, and rat GAT3/GATB. GAT3 is expressed primarily in the glia of the brain, and is a potential drug target for antiepileptic drugs. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 542

>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain

 Score =  150 bits (380), Expect = 9e-39
 Identities = 72/205 (35%), Positives = 120/205 (58%), Gaps = 4/205 (1%)

Query: 412 SSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFV 471
           +SYNK++N    D ++ S IN +TS + G  IF  +G + +EH+  IE+V  +G GL+F+
Sbjct: 275 ASYNKFDNNCYRDALLTSTINCVTSFISGFAIFSILGYMAHEHKVKIEDVATEGAGLVFI 334

Query: 472 VYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIV 531
           +YP+A++ L    FWAV+FF  LL L ++S    +E V+T + D F   +K++    ++ 
Sbjct: 335 LYPEAISTLSGSTFWAVVFFIMLLTLGIDSSMGGMEAVITGLADDF-SILKKH---RKLF 390

Query: 532 VLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNV 591
              V  ++F   L  +T GGIY   L+D + A T++++    E + V+W YG D+ + ++
Sbjct: 391 TFGVAFITFLLALFCITNGGIYVLTLLDTFAAGTSILFAVLMEAIGVSWFYGVDRFSDDI 450

Query: 592 HHMTGKFPSLYFRFCWSIAAPLLIL 616
             M G  P LY+R CW   +P  +L
Sbjct: 451 QQMMGFRPGLYWRLCWKFVSPAFLL 475

NET (also called NAT1, NET1), is a transmembrane transporter that transports the neurotransmitter norepinephrine from synaptic spaces into presynaptic neurons. Human NET is encoded by the SLC6A2 gene. NET is expressed in brain, peripheral nervous system, adrenal gland, and placenta. NET may play a role in diseases or disorders including depression, orthostatic intolerance, anorexia nervosa, cardiovascular diseases, alcoholism, and attention-deficit hyperactivity disorder. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 560

>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain

 Score =  148 bits (376), Expect = 3e-38
 Identities = 76/207 (36%), Positives = 118/207 (57%), Gaps = 2/207 (0%)

Query: 411 ISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIF 470
           + SYNKY N    D +++  +N+ TS + G  IF  +G +  E    I  V   GPGL F
Sbjct: 271 LGSYNKYTNNCYRDCIMLCFLNSATSFVAGFAIFSVLGFMAREQGVPISEVAESGPGLAF 330

Query: 471 VVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEI 530
           + YP A+  +P    W+ LFF  L+ L L+SQF  VE +VT+  D FP   ++     E+
Sbjct: 331 IAYPTAVTMMPVSQLWSCLFFLMLIFLGLDSQFVCVESMVTASIDMFPGVFRKKGR-REL 389

Query: 531 VVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTAS-TAVMYVAFFEVVAVAWIYGSDKLAR 589
           ++L + ++ +  GL  VT+GG+Y FQL D+Y AS T ++++A FEV+ + W+YG+++   
Sbjct: 390 LILAIAVICYLLGLLLVTEGGMYIFQLFDYYAASGTCLLFLAIFEVICIGWVYGANRFYD 449

Query: 590 NVHHMTGKFPSLYFRFCWSIAAPLLIL 616
           N+  M G  P    + CW +  P L L
Sbjct: 450 NIEDMIGYRPWPLIKICWLVFTPGLCL 476

BGT1 is a relatively low-affinity transporter of gamma-aminobutyric acid (GABA), and can also transport betaine. GABA is the main inhibitory neurotransmitter within the mammalian CNS. Human BGT1 is encoded by the SLC6A12 gene, and is similar to mouse GAT2. Mouse GAT2 plays a role in transporting GABA across the blood-brain barrier. In addition to being expressed in cells of the central nervous system, BGT1 is expressed in peripheral tissues, including kidney, liver, and heart. An association has been shown between the SLC6A12 gene and the occurrence of aspirin-intolerant asthma, and BGT1 is a drug target for antiepileptic drugs. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 541

>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

 Score =  144 bits (364), Expect = 1e-36
 Identities = 78/213 (36%), Positives = 119/213 (55%), Gaps = 4/213 (1%)

Query: 411 ISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIF 470
           ++SYNK++N    D++++SI N  TSV  G  IF  +G +       +  V   GPGL F
Sbjct: 300 MASYNKFHNNCYRDSIIISITNCATSVYAGFVIFSILGFMANHLGVDVSEVADHGPGLAF 359

Query: 471 VVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGF-PRWIKRYLVCHE 529
           V YP+AL  LP    W++LFFF L+ L L +QF L+E +VT++ D     WI R      
Sbjct: 360 VAYPEALTLLPISPLWSLLFFFMLILLGLGTQFCLLETLVTAVVDEIGNDWIIRN---KT 416

Query: 530 IVVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLAR 589
            V L V I+ F  G+P  TQ GIY+  L+D+Y AS +++ ++    +A+ +IYG     +
Sbjct: 417 YVTLGVAIIGFLLGIPLTTQAGIYWLLLMDNYAASFSLVIISCIMCIAIMYIYGHRNYFK 476

Query: 590 NVHHMTGKFPSLYFRFCWSIAAPLLILIRISLT 622
           ++  M G  P L+F+ CW   +P +I   +  T
Sbjct: 477 DIEMMLGFPPPLFFQICWRFVSPAIIFFILIFT 509

GlyT1 is a membrane-bound transporter that re-uptakes glycine from the synaptic cleft. Human GlyT1 is encoded by the SLC6A9 gene. GlyT1 is expressed in brain, pancreas, uterus, stomach, spleen, liver, and retina. GlyT1 may play a role in schizophrenia. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 585

>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family

 Score =  137 bits (347), Expect = 1e-34
 Identities = 50/94 (53%), Positives = 68/94 (72%)

Query: 61  VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
            FL+PY I L   GIP+ ++ELA+GQ+TR G IGV  K+CP FKG G +S++I F++  Y
Sbjct: 38  AFLIPYLIFLITAGIPLFFLELALGQYTREGAIGVWRKICPLFKGIGYASMVIVFYIGIY 97

Query: 121 YNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHC 154
           YNV+IA++LYY  +SF ++LPW  C N WNT  C
Sbjct: 98  YNVIIAWALYYLFSSFTTELPWASCNNSWNTPRC 131

Length = 506

>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain

 Score =  134 bits (339), Expect = 2e-33
 Identities = 64/166 (38%), Positives = 98/166 (59%)

Query: 244 HKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVF 303
            +VL IS GI+ +G+ RWEL  C   +W + YF +WK  +S+G+V+Y TAT P++++ + 
Sbjct: 161 RRVLAISDGIEHIGNLRWELALCLLAAWTICYFCIWKGTKSTGKVVYVTATFPYIMLLIL 220

Query: 304 LCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNN 363
           L   +TL G+  G++++  P+   LSD +VWV+AG QIF S  I  G +    SYN YNN
Sbjct: 221 LIRGVTLPGASEGIKFYLYPDLSRLSDPQVWVDAGTQIFFSYAICLGCLTALGSYNNYNN 280

Query: 364 QIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDG 409
               D +++  +N+ TS + G  IF  +G + YE    I  V   G
Sbjct: 281 NCYRDCIMLCCLNSGTSFVAGFAIFSVLGFMAYEQGVPIAEVAESG 326

This family includes human GAT3 (hGAT3) a high-affinity transporter of gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. hGAT3 is encoded by the SLC6A11 gene, and is similar to mouse GAT4, and rat GAT3/GATB. GAT3 is expressed primarily in the glia of the brain, and is a potential drug target for antiepileptic drugs. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 542

>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family [General function prediction only]

 Score =  132 bits (335), Expect = 2e-33
 Identities = 79/369 (21%), Positives = 149/369 (40%), Gaps = 83/369 (22%)

Query: 255 QMGDFRWELVACSFVSWILVYFALWKSVRS----SGRVLYFTATIPFLLI-FVFLCF-SL 308
           Q        V    +  +L    + + V+     + +++     +P L + F+ L   ++
Sbjct: 136 QTISNPGLAVIFHLLFLVLTALIVSRGVKKGIEKANKIM-----MPLLFVLFIILVIRAV 190

Query: 309 TLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQIIVD 368
           TL G+  GL++ F P+F  L+D KVW+ A  Q F S+ + +G                  
Sbjct: 191 TLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGI----------------- 233

Query: 369 TMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIVDTMVV 428
                                    ITY               SSY    + ++   + +
Sbjct: 234 ------------------------MITY---------------SSYLSKKSDLVSSALSI 254

Query: 429 SIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPNFWAV 488
            ++NT+ S+L G+ IF  + +   +           GPGL+F+V P    ++P    + +
Sbjct: 255 VLLNTLISLLAGLVIFPALFSFGADAS--------QGPGLVFIVLPAVFNQMPLGTLFGI 306

Query: 489 LFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGLPYVT 548
           LFF  LL  AL S  +++EV+V ++ D F   I R          ++ I+ F  G+P + 
Sbjct: 307 LFFLLLLFAALTSAISMLEVLVAALIDKFG--ISRK-----KATWLIGILIFLLGIPSIL 359

Query: 549 QGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLYFRFCWS 608
             G+  F L+D   ++  +   A    + V W+   + L   ++  + K   ++  +   
Sbjct: 360 SFGLSIFDLVDFVVSNILMPLGALLIAIFVGWVLKKELLREELNAGSAKLFKIWL-YLVR 418

Query: 609 IAAPLLILI 617
             AP++IL+
Sbjct: 419 YIAPIVILV 427

Length = 439

>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid transporter AT1, 2 and 3, and related proteins; solute-binding domain

 Score =  118 bits (299), Expect = 4e-28
 Identities = 40/84 (47%), Positives = 59/84 (70%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
           FL+PY I+L L GIP+ ++ELA+GQ  R+G IGV + + P+  G GI+S ++SF ++ YY
Sbjct: 39  FLIPYVIMLVLEGIPLFFLELAIGQRLRKGSIGVWNTISPYLGGIGIASCVVSFLVALYY 98

Query: 122 NVLIAYSLYYFSTSFRSQLPWQHC 145
           NV+IA+  +Y   SF+  LPW  C
Sbjct: 99  NVIIAWCFFYLFNSFQYPLPWSSC 122

This subgroup includes the solute-binding domain of transmembrane transporters, which transport, i) neutral amino acids: NTT4 (also called XT1), SBAT1 (also called B0AT2, v7-3, NTT7-3), and B0AT1 (also called HND); the human genes encoding these are SLC6A17, SLC6A15, and SLC6A19 respectively, ii) glycine: B0AT3 (also called Xtrp2, XT2), iii) imino acids, such as proline, pipecolate, MeAIB, and sarcosine: SIT1 (also called XTRP3, XT3, IMINO). The human genes encoding B0AT3 and SIT1 are SLC6A18 and SLC6A20 respectively. Transporters in this subgroup may play a role in disorders including major depression, Hartnup disorder, increased susceptibility to myocardial infarction, and iminoglycinuria. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 565

>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter transporters; solute-binding domain

 Score =  116 bits (293), Expect = 5e-28
 Identities = 41/76 (53%), Positives = 58/76 (76%)

Query: 61  VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
            FL+PY I+L L GIP+ ++ELA+GQ+T RGP+G   ++CP FKG G + V+ISF ++ Y
Sbjct: 37  AFLIPYLIMLLLVGIPLFFLELALGQYTSRGPVGAFWRICPLFKGVGYAQVVISFLVAIY 96

Query: 121 YNVLIAYSLYYFSTSF 136
           YNV+IA++LYY   SF
Sbjct: 97  YNVIIAWTLYYLFASF 112

This family represents the solute-binding domain of SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family). These use sodium and chloride electrochemical gradients to catalyze the thermodynamically uphill movement of a variety of substrates, and include neurotransmitter transporters (NTTs). The latter are Na+/Cl--dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. NTTs are widely expressed in the mammalian brain, and are involved in regulating neurotransmitter signaling and homeostasis, through facilitating the uptake of released neurotransmitters from the extracellular space into neurons and glial cells. NTTs are the target of a range of therapeutic drugs for the treatment of psychiatric diseases, such as major depression, anxiety disorders, attention deficit hyperactivity disorder and epilepsy. In addition, they are the primary targets of cocaine, amphetamines and other psychostimulants. This family also includes Drosophila Blot which is expressed primarily in epithelial tissues of ectodermal origin and in the nervous system of the embryo and larvae, but in addition found in the developing oocyte and the freshly laid egg. A lack or reduction of Blot function during oogenesis results in early arrest of embryonic development. 12 transmembrane helices (TMs) appears to be common for eukaryotic and some prokaryotic and archaeal SLC6s, (a core inverted topology repeat, TM1-5 and TM6-10, plus TMs11-12; TMs numbered to conform to the SLC6 Aquifex aeolicus LeuT), although a majority of bacterial, and some archaeal SLC6s lack TM12, for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1. Length = 417

>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6 subfamily; solute-binding domain

 Score =  103 bits (259), Expect = 1e-23
 Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 67/243 (27%)

Query: 217 DHWTSKVQFILACVGYSIGIGNLWRFPHKV-------------------------LQISS 251
           D W S+  F+LA +G ++G+GNL RFP  V                         L+++ 
Sbjct: 1   DQWGSRTAFVLAAMGGAVGLGNLLRFPSVVYNNGGLQFFIPYLLALVLLAIPILILELAL 60

Query: 252 G----------IDQMGDFRWELVA-------------CSFVSWILVYFA----------- 277
           G           + +      + A                ++WI+VYF            
Sbjct: 61  GQAYRGGCVKAFNLINRRAKGVGAAVVFGGFVVCTYYVPILAWIMVYFRHSFTVGWLAFT 120

Query: 278 -------LWKSVRSSGRVLYFTATIPFLLIFVFLCFSLTLDGSEIGLRYFFLPNF-ELLS 329
                  +++ V S+GRV+Y T  +P +LI + L    +L  +  G+R +F     + L+
Sbjct: 121 WFVVWLCVFRGVGSTGRVVYITMGLPIVLIIILLGRGASLPNAGDGIRLYFATWRGDKLA 180

Query: 330 DHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFI 389
             ++W  A  Q+F S G+ +G +  ++SYN   +  + D ++++  N++  ++ G  +F 
Sbjct: 181 SGEIWQAAAGQVFFSTGVGFGYMTAYASYNSKFSNAVQDALIIAGSNSLFEIIAGFAVFG 240

Query: 390 TIG 392
            +G
Sbjct: 241 IVG 243

SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, and are involved in regulating neurotransmitter signaling and homeostasis, and are the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. Length = 406

>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain

 Score =  101 bits (255), Expect = 5e-23
 Identities = 77/326 (23%), Positives = 131/326 (40%), Gaps = 73/326 (22%)

Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
           F+L+ +    SLTL G+  GL++ F P+F  L   +V + A  Q F S+ +  G +    
Sbjct: 176 FVLLIILAIRSLTLPGAGEGLKFLFKPDFSKL-TPEVVLAALGQAFFSLSLGMGVM---- 230

Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNK 416
                                                ITY                SY  
Sbjct: 231 -------------------------------------ITY---------------GSYLP 238

Query: 417 YNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQA 476
            +  +    ++V+I++T+ ++L G+ IF  +    +  E +       GPGL+F+  P  
Sbjct: 239 KDENLPKSALIVAILDTLVALLAGLVIFPAV--FAFGLEPA------AGPGLLFITLPAV 290

Query: 477 LAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVC 536
            A++P    + +LFF  LL  AL S  +L+EV V  + D F    K+  +   IV +++ 
Sbjct: 291 FAQMPGGRLFGILFFLLLLFAALTSAISLLEVPVAYLIDEFGWSRKKATL---IVGIIIF 347

Query: 537 IVSFFFGLPY-----VTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNV 591
           ++     L +      T  G   F L+D   ++  +        + V W+ G + L   +
Sbjct: 348 LLGIPSALSFGVLSDPTIFGKTIFDLLDFLVSNILLPLGGLLIAIFVGWVLGKEALREEL 407

Query: 592 HHMTGKFPSLYFRFCWSIAAPLLILI 617
           +   GK     +RF     AP+LILI
Sbjct: 408 NKGRGKKLFKIWRFLLRYVAPVLILI 433

SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1. Length = 439

>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain

 Score =  103 bits (257), Expect = 6e-23
 Identities = 42/94 (44%), Positives = 66/94 (70%), Gaps = 1/94 (1%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
           FL+PYF+ L   G+P+  +E ++GQ+T  G +GV  KL P FKG G+++ ++SF+++ YY
Sbjct: 81  FLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVW-KLAPMFKGVGLAAAVLSFWLNIYY 139

Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCW 155
            V+IA+++YY   SF + LPW+ C N WNT  C+
Sbjct: 140 IVIIAWAIYYLYNSFTTTLPWKSCDNPWNTDRCF 173

GAT1 transports gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. Human GAT1 is encoded by the SLC6A1 gene. GAT1 is expressed in brain and peripheral nervous system. The antiepileptic drug, Tiagabine, inhibits GAT1. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 598

>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain

 Score =  103 bits (257), Expect = 6e-23
 Identities = 47/97 (48%), Positives = 65/97 (67%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
           +LVPY I+L + GIP+ ++EL+VGQ  RRG IGV + + P   G G +S I+ FF++ YY
Sbjct: 39  YLVPYLILLLVIGIPLFFLELSVGQRIRRGSIGVWNYISPKLGGIGFASCIVCFFVALYY 98

Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPP 158
           NV+I +SL+YFS SF+  LPW  C    N  H +V P
Sbjct: 99  NVIIGWSLFYFSQSFQQPLPWDQCPLVKNASHTFVEP 135

SBAT1 (also called B0AT2, v7-3, NTT7-3) is a high-affinity Na(+)-dependent transporter for large neutral amino acids, including leucine, isoleucine, valine, proline and methionine. Human SBAT1 is encoded by the SLC6A15 gene, a susceptibility gene for major depression. SBAT1 is expressed in brain, and may have a role in transporting neurotransmitter precursors into neurons. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 580

>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter transporter 4, and related proteins; solute-binding domain

 Score =  101 bits (254), Expect = 1e-22
 Identities = 46/97 (47%), Positives = 64/97 (65%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
           +LVPY I+L + GIP+ ++EL+VGQ  RRG IGV + + P   G G +S I+  F++ YY
Sbjct: 39  YLVPYLILLIVIGIPLFFLELSVGQRIRRGSIGVWNYISPKLGGIGFASCIVCLFVALYY 98

Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPP 158
           NV+I +SL+YFS SF+  LPW  C    N  H +V P
Sbjct: 99  NVIIGWSLFYFSQSFQYPLPWDQCPLVKNASHTFVEP 135

This subgroup includes the solute-binding domain of NTT4 (also called XT1) and SBAT1 (also called B0AT2, v7-3, NTT7-3); both these proteins can transport neutral amino acids. Human SBAT1 is encoded by the SLC6A15 gene, a susceptibility gene for major depression. SBAT1 is expressed in brain, and may have a role in transporting neurotransmitter precursors into neurons. Human NTT4 is encoded by the SLC6A17 gene. NTT4 is specifically expressed in the nervous system, in synaptic vesicles of glutamatergic and GABAergic neurons, and may play an important role in synaptic transmission. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 530

>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid transporter SIT1; solute-binding domain

 Score = 99.5 bits (248), Expect = 7e-22
 Identities = 42/84 (50%), Positives = 60/84 (71%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
           FL+PY I+L L G+P+LY+ELAVGQ  R+G IG    + P+  G G++SV++SFF+S YY
Sbjct: 42  FLIPYLIMLILEGMPLLYLELAVGQRMRQGSIGAWKSISPYLGGVGVASVVVSFFLSMYY 101

Query: 122 NVLIAYSLYYFSTSFRSQLPWQHC 145
           NV+ A++ +Y   SF+  LPW  C
Sbjct: 102 NVINAWAFWYLFHSFQDPLPWSVC 125

SIT1 (also called XTRP3, XT3, IMINO) transports imino acids, such as proline, pipecolate, MeAIB, and sarcosine. It has weak affinity for neutral amino acids such as phenylalanine. Human SIT1 is encoded by the SLC6A20 gene. SIT1 is expressed in brain, kidney, small intestine, thymus, spleen, ovary, and lung. SLC6A20 is a candidate gene for the rare disorder iminoglycinuria. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 576

>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5; solute-binding domain

 Score = 99.4 bits (248), Expect = 7e-22
 Identities = 39/84 (46%), Positives = 60/84 (71%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
           FL+ YF++LFL GIP+L++E+AVGQ  ++G I V   + P+F G G SSV+  F ++ YY
Sbjct: 39  FLIAYFVMLFLVGIPLLFLEMAVGQRLQQGSIRVWKAISPWFGGVGYSSVLACFLVALYY 98

Query: 122 NVLIAYSLYYFSTSFRSQLPWQHC 145
           NV+ +++L+Y   SF+  LPW+ C
Sbjct: 99  NVVNSWALFYLGHSFQFPLPWEQC 122

Human NTT5 is encoded by the SLC6A16 gene. NTT5 is expressed in testis, pancreas, and prostate; its expression is predominantly intracellular, indicative of a vesicular location. Its substrates are unknown. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 543

>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain

 Score = 99.3 bits (247), Expect = 7e-22
 Identities = 45/117 (38%), Positives = 72/117 (61%), Gaps = 1/117 (0%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
           FL+PY +    CGIP+ ++E A+GQFT  G I    K+CP F+G G ++ +I   ++ YY
Sbjct: 40  FLIPYVVFFICCGIPVFFLETALGQFTSEGGITCWRKVCPLFEGIGYATQVIEAHLNVYY 99

Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPV 178
            +++A++++Y    F ++LPW  CG+ WNT++C     L   +   VS LQN + PV
Sbjct: 100 IIILAWAIFYLFNCFTTELPWATCGHEWNTENCVEFQKLNSSNCSHVS-LQNATSPV 155

This family includes human GAT3 (hGAT3) a high-affinity transporter of gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. hGAT3 is encoded by the SLC6A11 gene, and is similar to mouse GAT4, and rat GAT3/GATB. GAT3 is expressed primarily in the glia of the brain, and is a potential drug target for antiepileptic drugs. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 542

>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter 4; solute-binding domain

 Score = 99.2 bits (247), Expect = 1e-21
 Identities = 42/89 (47%), Positives = 60/89 (67%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
           +LVPY ++L + GIP+ ++ELAVGQ  RRG IGV + +CP   G G +S ++ FF+  YY
Sbjct: 39  YLVPYLVLLIIIGIPLFFLELAVGQRIRRGSIGVWNYICPRLGGIGYASCLVCFFVGLYY 98

Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWN 150
           NV+I +S++YF  SF+  LPW  C    N
Sbjct: 99  NVIIGWSIFYFFKSFQYPLPWSECPIVRN 127

NTT4 (also called XT1) transports the neutral amino acids, proline, glycine, leucine, and alanine, and may play an important role in synaptic transmission. Human NTT4 is encoded by the SLC6A17 gene. NTT4 is specifically expressed in the nervous system, in synaptic vesicles of glutamatergic and GABAergic neurons. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 589

>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding domain

 Score = 94.1 bits (234), Expect = 4e-20
 Identities = 40/84 (47%), Positives = 57/84 (67%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
           FL+PYFI L   GIP+ ++ELA+GQ  R+G IGV + + P+  G G+  V +SF +S YY
Sbjct: 40  FLIPYFIALVFEGIPLFHLELAIGQRLRKGSIGVWTTISPYLGGVGLGCVTVSFLVSLYY 99

Query: 122 NVLIAYSLYYFSTSFRSQLPWQHC 145
           N ++A+ L+YF  SF+  LPW  C
Sbjct: 100 NTILAWVLWYFLNSFQHPLPWSSC 123

B0AT3 (also called Xtrp2, XT2) transports glycine. Human B0AT3 is encoded by the SLC6A18 gene. B0AT3 is expressed in the kidney. Mutations in the SLC6A18 gene may contribute to the autosomal recessive disorder iminoglycinuria and its related disorder hyperglycinuria. SLC6A18 or its neighboring genes are associated with increased susceptibility to myocardial infarction. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 576

>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids transporter, B0AT1; solute-binding domain

 Score = 93.4 bits (232), Expect = 6e-20
 Identities = 39/84 (46%), Positives = 59/84 (70%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
           F++P+ I+L   GIP+L++E A+GQ  R+G +GV S + P  KG GI+S+ +SF +S YY
Sbjct: 39  FMIPFLILLVFEGIPLLHLEFAIGQRLRKGSVGVWSTIHPTLKGVGIASMCVSFLVSLYY 98

Query: 122 NVLIAYSLYYFSTSFRSQLPWQHC 145
           N +IA+ ++YF  SF+  LPW  C
Sbjct: 99  NTIIAWVMWYFFNSFQEPLPWSQC 122

B0AT1 (also called HND) transports neutral amino acids. Human B0AT1 is encoded by the SLC6A19 gene. B0AT1 is expressed primarily in the kidney and intestine; it requires collectrin for expression in the kidney, and angiotensin-converting enzyme 2 for expression in the intestine. Interaction with these two proteins implicates B0AT1 in more complex processes such as glomerular structure, exocytosis, and blood pressure control. The autosomal recessive disorder, Hartnup disorder, is caused by mutations in B0AT1. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 581

>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain

 Score = 69.8 bits (172), Expect = 1e-12
 Identities = 27/75 (36%), Positives = 42/75 (56%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
           FL+PY I L   GIP+L +E  +G   R        ++   F+  G   V+++F ++TYY
Sbjct: 39  FLIPYLIALLTAGIPLLILEYGLGHKFRGSAPLAFRRINKKFEWIGWWQVLVAFVIATYY 98

Query: 122 NVLIAYSLYYFSTSF 136
            V+IA++L Y   SF
Sbjct: 99  AVIIAWALSYLFFSF 113

SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. Length = 480

>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6 subfamily; solute-binding domain

 Score = 69.3 bits (170), Expect = 2e-12
 Identities = 29/75 (38%), Positives = 42/75 (56%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
           F +PY + L L  IPIL +ELA+GQ  R G +   + +    KG G + V   F + TYY
Sbjct: 38  FFIPYLLALVLLAIPILILELALGQAYRGGCVKAFNLINRRAKGVGAAVVFGGFVVCTYY 97

Query: 122 NVLIAYSLYYFSTSF 136
             ++A+ + YF  SF
Sbjct: 98  VPILAWIMVYFRHSF 112

SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, and are involved in regulating neurotransmitter signaling and homeostasis, and are the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. Length = 406

>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain

 Score = 66.7 bits (164), Expect = 1e-11
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCP---FFKGAGISSVIISFFMS 118
           FL+ Y + + L G+P+L  E A+G+ TR+ P+G  +KL      +K  G   V+ +F + 
Sbjct: 38  FLLVYLLFVLLIGLPLLIAEFAIGRRTRKNPVGAFAKLAKGGKKWKLVGWLGVLGAFLIL 97

Query: 119 TYYNVLIAYSLYYFSTSFRSQL 140
           ++Y+V+  + L Y   S     
Sbjct: 98  SFYSVVGGWVLAYLFKSLTGSF 119

SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1. Length = 439

>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family [General function prediction only]

 Score = 63.0 bits (154), Expect = 2e-10
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 61  VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCP--FFKGAGISSVIISFFMS 118
            FL+PY I L L GIP+L  E A+G+  R+  +G   KL P   ++  G   V+  F + 
Sbjct: 42  AFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAPKKKWEWIGWFGVLGGFLIL 101

Query: 119 TYYNVLIAYSLYYFSTSFRSQLP 141
           ++Y+V+  + L Y   S    LP
Sbjct: 102 SFYSVIGGWILSYLVKSLTGALP 124

Length = 439

>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid transporter AT1, 2 and 3, and related proteins; solute-binding domain

 Score = 55.7 bits (135), Expect = 4e-08
 Identities = 16/29 (55%), Positives = 25/29 (86%)

Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
           R  W +K+QF+LA +GY++G+GN+WRFP+
Sbjct: 1   RPAWDNKLQFLLATIGYAVGLGNVWRFPY 29

This subgroup includes the solute-binding domain of transmembrane transporters, which transport, i) neutral amino acids: NTT4 (also called XT1), SBAT1 (also called B0AT2, v7-3, NTT7-3), and B0AT1 (also called HND); the human genes encoding these are SLC6A17, SLC6A15, and SLC6A19 respectively, ii) glycine: B0AT3 (also called Xtrp2, XT2), iii) imino acids, such as proline, pipecolate, MeAIB, and sarcosine: SIT1 (also called XTRP3, XT3, IMINO). The human genes encoding B0AT3 and SIT1 are SLC6A18 and SLC6A20 respectively. Transporters in this subgroup may play a role in disorders including major depression, Hartnup disorder, increased susceptibility to myocardial infarction, and iminoglycinuria. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 565

>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter transporters; solute-binding domain

 Score = 53.3 bits (129), Expect = 2e-07
 Identities = 15/32 (46%), Positives = 27/32 (84%)

Query: 217 DHWTSKVQFILACVGYSIGIGNLWRFPHKVLQ 248
           + W SK++F+L+C+GY++G+GN+WRFP+   +
Sbjct: 1   EQWGSKLEFLLSCIGYAVGLGNVWRFPYLAYE 32

This family represents the solute-binding domain of SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family). These use sodium and chloride electrochemical gradients to catalyze the thermodynamically uphill movement of a variety of substrates, and include neurotransmitter transporters (NTTs). The latter are Na+/Cl--dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. NTTs are widely expressed in the mammalian brain, and are involved in regulating neurotransmitter signaling and homeostasis, through facilitating the uptake of released neurotransmitters from the extracellular space into neurons and glial cells. NTTs are the target of a range of therapeutic drugs for the treatment of psychiatric diseases, such as major depression, anxiety disorders, attention deficit hyperactivity disorder and epilepsy. In addition, they are the primary targets of cocaine, amphetamines and other psychostimulants. This family also includes Drosophila Blot which is expressed primarily in epithelial tissues of ectodermal origin and in the nervous system of the embryo and larvae, but in addition found in the developing oocyte and the freshly laid egg. A lack or reduction of Blot function during oogenesis results in early arrest of embryonic development. 12 transmembrane helices (TMs) appears to be common for eukaryotic and some prokaryotic and archaeal SLC6s, (a core inverted topology repeat, TM1-5 and TM6-10, plus TMs11-12; TMs numbered to conform to the SLC6 Aquifex aeolicus LeuT), although a majority of bacterial, and some archaeal SLC6s lack TM12, for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1. Length = 417

>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins; solute binding domain

 Score = 53.8 bits (130), Expect = 2e-07
 Identities = 34/206 (16%), Positives = 89/206 (43%), Gaps = 9/206 (4%)

Query: 412 SSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFV 471
           +SY + ++ I++ ++  + +N    V++G  I I      +    ++        GL F+
Sbjct: 248 ASYLRKDDDIVLSSLTAASLNEFAEVILGGSIVIPA---AFAFLGAVAVAKAGTFGLGFI 304

Query: 472 VYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIV 531
             P   +++P   F+  L+FF L    + S  A+++ ++  +++   +W +++      +
Sbjct: 305 ALPNVFSQMPGGQFFGFLWFFLLFFAGITSSIAMLQPLIAFLEEEL-KWSRKHAAL--WI 361

Query: 532 VLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNV 591
             +V IV       ++          +D +  +  ++ +   EV+  AWI+G+ K    +
Sbjct: 362 FALVIIVGLPVAFEFIDLK---ALDELDFWVGTILLVVLGLIEVIVFAWIFGAKKGWEEI 418

Query: 592 HHMTGKFPSLYFRFCWSIAAPLLILI 617
           +         +F++      P  +++
Sbjct: 419 NRGALIKVPRFFKYVIKYITPAFLIV 444

LeuT is a bacterial amino acid transporter with specificity for the hydrophobic amino acids glycine, alanine, methionine, and leucine. This subgroup belongs to the solute carrier 6 (SLC6) transporter family; LeuT has been used as a structural template for understanding fundamental aspects of SLC6 function. It has an arrangement of 12 transmembrane helices (TMs), which appears to be a common motif for eukaryotic and some prokaryotic and archaeal SLC6s: an inverted topology repeat: TMs1-5 and TMs6-10, and TMs11-12. Length = 500

>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins; solute binding domain

 Score = 53.1 bits (128), Expect = 3e-07
 Identities = 31/138 (22%), Positives = 67/138 (48%), Gaps = 14/138 (10%)

Query: 263 LVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF--VFLCFSLTLD-------GS 313
            +    +++ ++Y  + K + +  ++      +P L +F  +     LTL         +
Sbjct: 151 FLITLALNFFILYRGVSKGIEAFAKIA-----MPLLYVFAIILAIRVLTLGTPVNPDWTA 205

Query: 314 EIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQIIVDTMVVS 373
             GL + + P+F  L D KVW+ A  QIF ++ +  G +I ++SY + ++ I++ ++  +
Sbjct: 206 LKGLNFLWNPDFSKLKDPKVWLAAAGQIFFTLSLGMGIIINYASYLRKDDDIVLSSLTAA 265

Query: 374 IINTITSVLIGVFIFITI 391
            +N    V++G  I I  
Sbjct: 266 SLNEFAEVILGGSIVIPA 283

LeuT is a bacterial amino acid transporter with specificity for the hydrophobic amino acids glycine, alanine, methionine, and leucine. This subgroup belongs to the solute carrier 6 (SLC6) transporter family; LeuT has been used as a structural template for understanding fundamental aspects of SLC6 function. It has an arrangement of 12 transmembrane helices (TMs), which appears to be a common motif for eukaryotic and some prokaryotic and archaeal SLC6s: an inverted topology repeat: TMs1-5 and TMs6-10, and TMs11-12. Length = 500

>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain

 Score = 53.0 bits (128), Expect = 4e-07
 Identities = 15/28 (53%), Positives = 23/28 (82%)

Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFP 243
           R  W++K+ F+L+  GY+IG+GN+WRFP
Sbjct: 1   RGKWSNKIDFLLSVAGYAIGLGNVWRFP 28

This subgroup represents the solute-binding domain of TauT-like Na(+)- and Cl(-)-dependent transporters. Family members include: human TauT which transports taurine, human GAT1, GAT2, and GAT3, and BGT1, which transport gamma-aminobutyric acid (GABA), and human CT1 which transports creatine. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 543

>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family

 Score = 52.7 bits (127), Expect = 4e-07
 Identities = 13/29 (44%), Positives = 25/29 (86%)

Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
           R+ W+ K+ F+L+ +G+++G+GN+WRFP+
Sbjct: 1   RETWSGKLDFLLSVIGFAVGLGNVWRFPY 29

Length = 506

>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain

 Score = 48.6 bits (116), Expect = 7e-06
 Identities = 15/29 (51%), Positives = 24/29 (82%)

Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
           R  W  K++F+L+C+GY +G+GN+WRFP+
Sbjct: 1   RGQWGGKLEFLLSCIGYCVGLGNVWRFPY 29

PROT is a high-affinity L-proline transporter that transports L-proline, and may have a role in excitatory neurotransmission. Human PROT is encoded by the SLC6A7 gene, a potential susceptible gene for asthma. PROT is expressed in the brain. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 544

>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain

 Score = 48.1 bits (114), Expect = 1e-05
 Identities = 17/29 (58%), Positives = 24/29 (82%)

Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
           RD W  K  F+++CVGY+IG+GN+WRFP+
Sbjct: 43  RDTWKGKFDFLMSCVGYAIGLGNVWRFPY 71

GAT1 transports gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. Human GAT1 is encoded by the SLC6A1 gene. GAT1 is expressed in brain and peripheral nervous system. The antiepileptic drug, Tiagabine, inhibits GAT1. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 598

>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family [General function prediction only]

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 214 RKRDHWTSKVQFILACVGYSIGIGNLWRFPHKV 246
            KR+ W+S++ FILA  G ++G+GN+WRFP+  
Sbjct: 3   EKREQWSSRLGFILAAAGSAVGLGNIWRFPYMA 35

Length = 439

>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine transporter 1; solute-binding domain

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 5/61 (8%)

Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSGIDQMGDFRWELVACSFVSWILVY 275
           R+ WT ++ FI++CVG+++G+GN+WRFP+   +   G+     F    +   FV  I V+
Sbjct: 1   RETWTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGV-----FLIPYLLIVFVGGIPVF 55

Query: 276 F 276
           F
Sbjct: 56  F 56

CT1 (also called CRTR, CRT) transports creatine. Human CT1 is encoded by the SLC6A8 gene. CT1 is ubiquitously expressed, with highest levels found in skeletal muscle and kidney. Creatine is absorbed from food or synthesized from arginine and plays an important role in energy metabolism. Deficiency in human CT1 leads to X-linked cerebral creatine transporter deficiency. In males, this disorder is characterized by language and speech delays, autistic-like behavior, seizures in about 50% of cases, and can also involve midfacial hypoplasia, and short stature. In females, it is characterized by mild cognitive impairment with behavior and learning problems. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 592

>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 18/37 (48%), Positives = 28/37 (75%)

Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSG 252
           R +W++K+ FIL+ VGY++G+GN+WRFP+   Q   G
Sbjct: 1   RGNWSNKLDFILSMVGYAVGLGNVWRFPYLAFQNGGG 37

GlyT2 (also called NET1) is a membrane-bound transporter that re-uptakes glycine from the synaptic cleft. Human GlyT2 is encoded by the SLC6A5 gene. GlyT2 is expressed in brain and spinal cord. GlyT2 may play a role in pain, and in spasticity. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 606

>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 18/29 (62%), Positives = 25/29 (86%)

Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
           R  W SK+Q+ILA VG+S+G+GN+WRFP+
Sbjct: 1   RPAWNSKLQYILAQVGFSVGLGNVWRFPY 29

SBAT1 (also called B0AT2, v7-3, NTT7-3) is a high-affinity Na(+)-dependent transporter for large neutral amino acids, including leucine, isoleucine, valine, proline and methionine. Human SBAT1 is encoded by the SLC6A15 gene, a susceptibility gene for major depression. SBAT1 is expressed in brain, and may have a role in transporting neurotransmitter precursors into neurons. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 580

>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter 4; solute-binding domain

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 18/29 (62%), Positives = 25/29 (86%)

Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
           R  W SK+Q+ILA +GYS+G+GN+WRFP+
Sbjct: 1   RPAWNSKLQYILAQIGYSVGLGNVWRFPY 29

NTT4 (also called XT1) transports the neutral amino acids, proline, glycine, leucine, and alanine, and may play an important role in synaptic transmission. Human NTT4 is encoded by the SLC6A17 gene. NTT4 is specifically expressed in the nervous system, in synaptic vesicles of glutamatergic and GABAergic neurons. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 589

>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain

 Score = 47.0 bits (113), Expect = 2e-05
 Identities = 14/27 (51%), Positives = 22/27 (81%)

Query: 217 DHWTSKVQFILACVGYSIGIGNLWRFP 243
           + W+S++ FILA  G ++G+GN+WRFP
Sbjct: 1   EQWSSRLGFILAAAGSAVGLGNIWRFP 27

SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1. Length = 439

>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding domain

 Score = 47.1 bits (112), Expect = 3e-05
 Identities = 14/29 (48%), Positives = 25/29 (86%)

Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
           R  W +K Q++L+C+G+++G+GN+WRFP+
Sbjct: 2   RPKWDNKAQYLLSCIGFAVGLGNIWRFPY 30

B0AT3 (also called Xtrp2, XT2) transports glycine. Human B0AT3 is encoded by the SLC6A18 gene. B0AT3 is expressed in the kidney. Mutations in the SLC6A18 gene may contribute to the autosomal recessive disorder iminoglycinuria and its related disorder hyperglycinuria. SLC6A18 or its neighboring genes are associated with increased susceptibility to myocardial infarction. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 576

>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter transporter 4, and related proteins; solute-binding domain

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 18/29 (62%), Positives = 25/29 (86%)

Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
           R  W SK+Q+ILA VG+S+G+GN+WRFP+
Sbjct: 1   RPAWNSKLQYILAQVGFSVGLGNVWRFPY 29

This subgroup includes the solute-binding domain of NTT4 (also called XT1) and SBAT1 (also called B0AT2, v7-3, NTT7-3); both these proteins can transport neutral amino acids. Human SBAT1 is encoded by the SLC6A15 gene, a susceptibility gene for major depression. SBAT1 is expressed in brain, and may have a role in transporting neurotransmitter precursors into neurons. Human NTT4 is encoded by the SLC6A17 gene. NTT4 is specifically expressed in the nervous system, in synaptic vesicles of glutamatergic and GABAergic neurons, and may play an important role in synaptic transmission. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 530

>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid transporter SIT1; solute-binding domain

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 14/29 (48%), Positives = 23/29 (79%)

Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
           R  W + +QF+ AC+ Y++G+GN+WRFP+
Sbjct: 4   RPLWDNPLQFVFACISYAVGLGNVWRFPY 32

SIT1 (also called XTRP3, XT3, IMINO) transports imino acids, such as proline, pipecolate, MeAIB, and sarcosine. It has weak affinity for neutral amino acids such as phenylalanine. Human SIT1 is encoded by the SLC6A20 gene. SIT1 is expressed in brain, kidney, small intestine, thymus, spleen, ovary, and lung. SLC6A20 is a candidate gene for the rare disorder iminoglycinuria. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 576

>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 13/29 (44%), Positives = 24/29 (82%)

Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
           R +W+ K  ++L+ +GY++G+GN+WRFP+
Sbjct: 1   RGNWSKKSDYLLSMIGYAVGLGNVWRFPY 29

ATB0+ (also known as the beta-alanine carrier) is a transmembrane transporter with a broad substrate specificity; it can transport non-alpha-amino acids such as beta-alanine with low affinity, and can transport dipolar and cationic amino acids such as leucine and lysine, with a higher affinity. It may have a role in the absorption of essential nutrients and drugs in the distal regions of the human gastrointestinal tract. Human ATB0+ is encoded by the SLC6A14 gene. ATB0+ is expressed in the lung, trachea, salivary gland, mammary gland, stomach, and pituitary gland. ATB0+ may play a role in obesity, and its upregulation may have a pathogenic role in colorectal cancer. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 601

>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 15/30 (50%), Positives = 26/30 (86%)

Query: 215 KRDHWTSKVQFILACVGYSIGIGNLWRFPH 244
           KR +W ++++F+L  VGY++G+GN+WRFP+
Sbjct: 16  KRGNWGNQIEFVLTSVGYAVGLGNVWRFPY 45

GlyT1 is a membrane-bound transporter that re-uptakes glycine from the synaptic cleft. Human GlyT1 is encoded by the SLC6A9 gene. GlyT1 is expressed in brain, pancreas, uterus, stomach, spleen, liver, and retina. GlyT1 may play a role in schizophrenia. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 585

>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain

 Score = 44.8 bits (107), Expect = 1e-04
 Identities = 15/28 (53%), Positives = 23/28 (82%)

Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFP 243
           R+ W S++ FILA +G ++G+GN+WRFP
Sbjct: 1   REQWGSRLGFILAAIGSAVGLGNIWRFP 28

SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. Length = 480

>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids transporter, B0AT1; solute-binding domain

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 15/29 (51%), Positives = 23/29 (79%)

Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
           R  W +K Q++L CVG+ +G+GN+WRFP+
Sbjct: 1   RPKWDNKAQYMLTCVGFCVGLGNVWRFPY 29

B0AT1 (also called HND) transports neutral amino acids. Human B0AT1 is encoded by the SLC6A19 gene. B0AT1 is expressed primarily in the kidney and intestine; it requires collectrin for expression in the kidney, and angiotensin-converting enzyme 2 for expression in the intestine. Interaction with these two proteins implicates B0AT1 in more complex processes such as glomerular structure, exocytosis, and blood pressure control. The autosomal recessive disorder, Hartnup disorder, is caused by mutations in B0AT1. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 581

>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5; solute-binding domain

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 19/37 (51%), Positives = 27/37 (72%)

Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSG 252
           R  W +K ++ILA VG+S+G+GNLWRFP+  L+   G
Sbjct: 1   RPLWRNKTEYILAQVGFSLGLGNLWRFPYLCLRNGGG 37

Human NTT5 is encoded by the SLC6A16 gene. NTT5 is expressed in testis, pancreas, and prostate; its expression is predominantly intracellular, indicative of a vesicular location. Its substrates are unknown. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 543

>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 16/30 (53%), Positives = 24/30 (80%)

Query: 215 KRDHWTSKVQFILACVGYSIGIGNLWRFPH 244
           +R HW +KV+F+L+  G  IG+GN+WRFP+
Sbjct: 1   ERGHWNNKVEFVLSVAGEIIGLGNVWRFPY 30

This family includes human GAT3 (hGAT3) a high-affinity transporter of gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. hGAT3 is encoded by the SLC6A11 gene, and is similar to mouse GAT4, and rat GAT3/GATB. GAT3 is expressed primarily in the glia of the brain, and is a potential drug target for antiepileptic drugs. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 542

>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter 2; solute-binding domain

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 14/29 (48%), Positives = 22/29 (75%)

Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
           R  W +K++F+L+  G  IG+GN+WRFP+
Sbjct: 1   RGQWNNKLEFVLSVAGEIIGLGNVWRFPY 29

This family includes human GAT2 (hGAT2) which transports gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. hGAT2 is encoded by the SLC6A13 gene, and is similar to mouse GAT-3, and rat GAT2. hGAT2 is expressed in brain, kidney, lung, and testis. hGAT2 is a potential drug target for treatment of epilepsy. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 544

>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 12/29 (41%), Positives = 22/29 (75%)

Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
           R+ W  K  F+L+ +G+++ +GN+WRFP+
Sbjct: 1   RETWGKKADFLLSVIGFAVDLGNVWRFPY 29

This subgroup represents the solute-binding domain of transmembrane transporters that transport monoamine neurotransmitters from synaptic spaces into presynaptic neurons. Members include: NET which transports norepinephrine, SERT which transports serotonin, and DAT1 which transports dopamine. These transporters may play a role in diseases including depression, anxiety disorders, attention-deficit hyperactivity disorder, and in the control of human behavior and emotional states. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 539

>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 14/30 (46%), Positives = 23/30 (76%)

Query: 215 KRDHWTSKVQFILACVGYSIGIGNLWRFPH 244
           +R  W +K++F+L+  G  IG+GN+WRFP+
Sbjct: 1   ERGQWRNKMEFVLSVAGEIIGLGNVWRFPY 30

BGT1 is a relatively low-affinity transporter of gamma-aminobutyric acid (GABA), and can also transport betaine. GABA is the main inhibitory neurotransmitter within the mammalian CNS. Human BGT1 is encoded by the SLC6A12 gene, and is similar to mouse GAT2. Mouse GAT2 plays a role in transporting GABA across the blood-brain barrier. In addition to being expressed in cells of the central nervous system, BGT1 is expressed in peripheral tissues, including kidney, liver, and heart. An association has been shown between the SLC6A12 gene and the occurrence of aspirin-intolerant asthma, and BGT1 is a drug target for antiepileptic drugs. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 541

>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins; solute binding domain

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRR-----GPIGVLSKLC--PFFKGAGISSVIIS 114
           F++PYFI   L GIP++++E A+G++  +      P  +        F K  G     I 
Sbjct: 39  FMIPYFIAFLLVGIPLMWVEWAMGRYGGKHGHGTTP-MIFLLAKRNIFAKILGAIGFAIP 97

Query: 115 FFMSTYYNVLIAYSLYYFSTSFRSQLPWQ 143
             +++YY  + +++L Y   S     P  
Sbjct: 98  LLVNSYYVYIESWTLGYAFKSLTGGYPEP 126

LeuT is a bacterial amino acid transporter with specificity for the hydrophobic amino acids glycine, alanine, methionine, and leucine. This subgroup belongs to the solute carrier 6 (SLC6) transporter family; LeuT has been used as a structural template for understanding fundamental aspects of SLC6 function. It has an arrangement of 12 transmembrane helices (TMs), which appears to be a common motif for eukaryotic and some prokaryotic and archaeal SLC6s: an inverted topology repeat: TMs1-5 and TMs6-10, and TMs11-12. Length = 500

>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 14/29 (48%), Positives = 22/29 (75%)

Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
           R+ W SK+ F+L+  G  +G+GN+WRFP+
Sbjct: 1   REKWASKIDFVLSVAGGFVGLGNVWRFPY 29

TauT is a Na(+)- and Cl(-)-dependent, high-affinity, low-capacity transporter of taurine and beta-alanine. Human TauT is encoded by the SLC6A6 gene. TauT is expressed in brain, retina, liver, kidney, heart, spleen, and pancreas. It may play a part in the supply of taurine to the intestinal epithelium and in the between-meal-capture of taurine. It may also participate in re-absorbing taurine that has been deconjugated from bile acids in the distal lumen. Functional TauT protects kidney cells from nephrotoxicity caused by the chemotherapeutic agent cisplatin; cisplatin down-regulates TauT in a p53-dependent manner. In mice, TauT has been shown to be important for the maintenance of skeletal muscle function and total exercise capacity. TauT-/- mice develop additional clinically important diseases, some of which are characterized by apoptosis, including vision loss, olfactory dysfunction, and chronic liver disease. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 542

>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins; solute binding domain

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQ 248
           R+HW S++  ILA  G ++G+GN  RFP +  Q
Sbjct: 1   REHWGSRIGLILAMAGNAVGLGNFLRFPVQAAQ 33

LeuT is a bacterial amino acid transporter with specificity for the hydrophobic amino acids glycine, alanine, methionine, and leucine. This subgroup belongs to the solute carrier 6 (SLC6) transporter family; LeuT has been used as a structural template for understanding fundamental aspects of SLC6 function. It has an arrangement of 12 transmembrane helices (TMs), which appears to be a common motif for eukaryotic and some prokaryotic and archaeal SLC6s: an inverted topology repeat: TMs1-5 and TMs6-10, and TMs11-12. Length = 500

>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 12/29 (41%), Positives = 23/29 (79%)

Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
           R+ W  K+ F+L+ +G+++ +GN+WRFP+
Sbjct: 1   RETWGKKMDFLLSVIGFAVDLGNVWRFPY 29

SERT (also called 5-HTT), is a transmembrane transporter that transports the neurotransmitter serotonin from synaptic spaces into presynaptic neurons. The antiport of a K+ ion is believed to follow the transport of serotonin and promote the reorientation of SERT for another transport cycle. Human SERT is encoded by the SLC6A4 gene. SERT is expressed in brain, peripheral nervous system, placenta, epithelium, and platelets. SERT may play a role in diseases or disorders including anxiety, depression, autism, gastrointestinal disorders, premature ejaculation, and obesity. It may also have a role in social cognition. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 537

>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 12/29 (41%), Positives = 22/29 (75%)

Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
           R+ W  K+ F+L+ VG+++ + N+WRFP+
Sbjct: 1   RETWGKKIDFLLSVVGFAVDLANVWRFPY 29

NET (also called NAT1, NET1), is a transmembrane transporter that transports the neurotransmitter norepinephrine from synaptic spaces into presynaptic neurons. Human NET is encoded by the SLC6A2 gene. NET is expressed in brain, peripheral nervous system, adrenal gland, and placenta. NET may play a role in diseases or disorders including depression, orthostatic intolerance, anorexia nervosa, cardiovascular diseases, alcoholism, and attention-deficit hyperactivity disorder. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 560

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	631
KOG3660|consensus	629		100.0
KOG3659|consensus	629		100.0
PF00209	523	SNF: Sodium:neurotransmitter symporter family; Int	100.0
COG0733	439	Na+-dependent transporters of the SNF family [Gene	100.0
COG0733	439	Na+-dependent transporters of the SNF family [Gene	99.17
KOG3659|consensus	629		98.63
KOG3660|consensus	629		98.42
PF00209	523	SNF: Sodium:neurotransmitter symporter family; Int	98.24
TIGR00814	397	stp serine transporter. The HAAAP family includes	92.31
PRK11375	484	allantoin permease; Provisional	85.68
PF03845	320	Spore_permease: Spore germination protein; InterPr	82.81

>KOG3660|consensus

Probab=100.00  E-value=8.8e-100  Score=850.79  Aligned_cols=471  Identities=42%  Similarity=0.889  Sum_probs=423.5

Q ss_pred             cccCCccccceEEeeceeeeEecC------------ceeehHHHHHHHHHHhHHHHHHHHHhhcccCCChHHHHhhhccc
Q psy11511         35 KVSDWTSSFKIEVPLQYCTSIVGN------------IRVFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPF  102 (631)
Q Consensus        35 ~~~~w~s~~~~~~~~~~~~~~~gn------------GgaFlipY~i~l~liGiPll~lElalGQ~~r~g~i~~~~~l~p~  102 (631)
                      +|++|+|+++|.+.+.+.++|+||            ||||+|||+++++++|+|+++||+++||++++||+++|+|++|+
T Consensus        33 ~R~~w~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~g~v~~wrri~Pi  112 (629)
T KOG3660|consen   33 DRGNWKSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQGPVSVWRRICPI  112 (629)
T ss_pred             ccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcCChHHHHHHhChH
Confidence            699999999999999999999997            66999999999999999999999999999999999999999999


Q ss_pred             cccccchhhHHHHHhhhHHHHHHHHHHHHHHHhcccCCCCCcCCCCCCCCcccCCCCCCCCCccccccccCCCCCCCCCC
Q psy11511        103 FKGAGISSVIISFFMSTYYNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSKT  182 (631)
Q Consensus       103 ~~GiG~~~~l~~~~i~~YY~vi~aW~l~Y~~~sf~~~lPW~~C~~~wnt~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (631)
                      +||+|+++++++.++++||+++++|+++|+++||++++||++|+|+|||++|.+..+.+.+        .+.+++    .
T Consensus       113 f~GvG~a~v~~~~~~~~Yy~viiaw~l~Yl~~sf~~~lpW~~C~~~wnt~~c~~~~~~~~~--------~~~~~~----~  180 (629)
T KOG3660|consen  113 FKGVGWASVVISALLAIYYIVILAWALYYLFSSFTSDLPWSTCNNPWNTEYCLDGTSKQNC--------ANLTKL----S  180 (629)
T ss_pred             hcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChhhcCChhcCCccccccccccc--------cccccc----c
Confidence            9999999999999999999999999999999999999999999999999999864332111        011100    0


Q ss_pred             chhhhhccccccccccCCCCCccCcCCCCCCCcccccchhHHHHHhhhccccccCccccccceeccccc--CcCccCccc
Q psy11511        183 PSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISS--GIDQMGDFR  260 (631)
Q Consensus       183 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~fila~~g~avglgniw~Fp~~vl~~~~--~i~~~g~l~  260 (631)
                      + ...++                       .+..+.|.                       +.....+.  +++++|.++
T Consensus       181 ~-~~~~~-----------------------~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~  213 (629)
T KOG3660|consen  181 N-ALNFN-----------------------SPVAEFWE-----------------------NRVLSLSDGSGIEDFGSIN  213 (629)
T ss_pred             c-hhhhc-----------------------cchhhhhh-----------------------hhhcccccccccccCCCCC
Confidence            0 00111                       00111122                       22222222  588999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhcceecccceeeeechhhHHHHHHHHHhhcccCChhhhhhheeeccccccccHHHHHHHHHH
Q psy11511        261 WELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQ  340 (631)
Q Consensus       261 w~lv~~l~~~wilv~~~l~kGi~~~~Kv~~~~~~~p~vll~il~~r~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q  340 (631)
                      |++++++.++|++++++++||+|++||++|+++++||++++++++|++|||||.+|++|+++|||++|.|+++|.||+.|
T Consensus       214 w~L~~~l~~~Wliv~~~i~KGvks~GKvvY~~a~fPyviL~iLliRgvTL~Ga~~Gi~~~l~~~~~kL~~~~vW~dA~~Q  293 (629)
T KOG3660|consen  214 WPLALCLALAWLIVFFCIWKGVKSSGKVVYFTATFPYVILIVLLIRGVTLPGAGDGINFYLTPDWTKLLDPQVWGDAATQ  293 (629)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcEEEEEehhHHHHHHHHHHHHccCCCHHHHHHHHHhhhhHhhcChhhHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhHhhhhccccccCCccccceehhhhhHHHHHHHHHHhhhhccccccccccchhhhhhcccccccccccccc
Q psy11511        341 IFNSIGIAYGAVITFSSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQ  420 (631)
Q Consensus       341 ~ffslslg~G~~it~gSy~~~~~ni~~da~~v~~~~~~~sllagl~if~~~g~~~~~~~~~~~~~~~~~~~~s~n~~~~~  420 (631)
                      +|||+|+|+|++++++||||++||++||++++++.|+.+|+++|+++|+                               
T Consensus       294 iffSlsi~~G~li~laSynk~~nN~yrDa~lv~~~~~~tS~~~g~~iFs-------------------------------  342 (629)
T KOG3660|consen  294 IFFSLSIGFGGLIALASYNKFNNNCYRDAILVVLLDTITSLLAGFAIFS-------------------------------  342 (629)
T ss_pred             HHHhHHHHHhhhheeeeeeccCCcceeeeeeeeecccHHHHHHHHHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999999999                               


Q ss_pred             hhhhhhhhhhhccccccccceeeeeeecccccccCc-cccccccCCCceEeehHHHHHhcCCCchhHHHHHHHHHHHHhh
Q psy11511        421 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHET-SIENVILDGPGLIFVVYPQALAKLPFPNFWAVLFFFSLLCLAL  499 (631)
Q Consensus       421 ~~~d~~~~~~~~~~~~~~~~~~~f~~~G~~~~~~~~-~~~~v~~~GpgL~Fi~lP~~f~~mp~~~~w~~lFFl~l~~agl  499 (631)
                                               ++|+++++++. ++++++++||+|+|++||+++++||.+++|+.|||+|++++|+
T Consensus       343 -------------------------ilGfla~~~~v~~~~~v~~~g~~LaFi~YP~a~~~~p~~plWs~LfF~ml~~LG~  397 (629)
T KOG3660|consen  343 -------------------------ILGFLAHEQGVSDIAEVAKSGPGLAFIAYPEALAQMPLSPLWSGLFFFMLLLLGL  397 (629)
T ss_pred             -------------------------HHHHHHHHhCCcchhhccCCCCchhhhhhHHHHHhCcccHHHHHHHHHHHHHHHh
Confidence                                     46778888888 8889999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHhhhccCCccccccccchhhhHHHHHHHHHHhcccccccccceeehhhHHHhhhHHHHHHHHHHhheee
Q psy11511        500 NSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVA  579 (631)
Q Consensus       500 tS~i~l~E~iv~~l~d~f~~~~rr~~~~~~~~~~~~c~~~fl~gl~~~t~~G~~~~~l~D~~~~~~~l~~~~l~e~i~v~  579 (631)
                      +|++.++|.+++++.|+||+ .|+   .+...++.+|+++|++|++++|++|.|+++++|+|.+++.+++++++|++.++
T Consensus       398 ~s~~~~ve~i~t~i~D~Fp~-~~~---~~~~~vl~vcv~~fllGl~~~t~~G~y~~~l~D~y~a~~~~~~~~~~e~~~i~  473 (629)
T KOG3660|consen  398 DSQFAIVETIVTAIVDEFPR-LRN---RRWIVVLFVCVVGFLLGLPLVTEGGIYWFQLFDYYAASWSLLFIAIFECFAIA  473 (629)
T ss_pred             hhHHHHHHHHHHHHHHhccc-ccc---cchhhhHHHHHHHHHcchheecCcchhHHHHHHHHhchHHHHHHHHHHHHHHh
Confidence            99999999999999999982 222   24457889999999999999999999999999999999999999999999999


Q ss_pred             EEeCchhHHHHHhhhcC-CCCcceeeeeehhhhHHHHHHHHHHHhhc
Q psy11511        580 WIYGSDKLARNVHHMTG-KFPSLYFRFCWSIAAPLLILIRISLTHLL  625 (631)
Q Consensus       580 wvyG~~~~~~di~~m~g-~~~~~~~~~~w~~v~Pi~l~~~~~l~~~~  625 (631)
                      |+||.||+++|++.|.| .++..+|++||++++|++++.+++. .++
T Consensus       474 wiYG~~~~~~di~~M~g~~~~~~~~~~~W~f~tP~~~~~i~v~-s~~  519 (629)
T KOG3660|consen  474 WVYGADRFRDDIHEMIGCGRPSPYWKLCWKFVTPILLLGILVF-SLV  519 (629)
T ss_pred             heecccchHhhHHHHhCCCCCCHHHHHHHHHhhhHHHHHHHHH-HHH
Confidence            99999999999999999 9999999999999999999988777 444

>KOG3659|consensus

Probab=100.00  E-value=1.2e-98  Score=810.73  Aligned_cols=466  Identities=40%  Similarity=0.853  Sum_probs=423.4

Q ss_pred             ccCCccccceEEeeceeeeEecC------------ceeehHHHHHHHHHHhHHHHHHHHHhhcccCCChHHHHhhhcccc
Q psy11511         36 VSDWTSSFKIEVPLQYCTSIVGN------------IRVFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFF  103 (631)
Q Consensus        36 ~~~w~s~~~~~~~~~~~~~~~gn------------GgaFlipY~i~l~liGiPll~lElalGQ~~r~g~i~~~~~l~p~~  103 (631)
                      |++|++|+.+.++..+.++.+||            ||+|++||++++++.|+||++||+++||+.|+|++++|+|++|.+
T Consensus        78 R~~W~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r~g~~gvw~ri~P~l  157 (629)
T KOG3659|consen   78 RPTWGSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHRQGCIGVWRRIAPAL  157 (629)
T ss_pred             CCcchhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhcccchhHHHHhCHHh
Confidence            89999999999998888888886            889999999999999999999999999999999999999999999


Q ss_pred             ccccchhhHHHHHhhhHHHHHHHHHHHHHHHhcccCCCCCcCCCCCCCCcccCCCCCCCCCccccccccCCCCCCCCCCc
Q psy11511        104 KGAGISSVIISFFMSTYYNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSKTP  183 (631)
Q Consensus       104 ~GiG~~~~l~~~~i~~YY~vi~aW~l~Y~~~sf~~~lPW~~C~~~wnt~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (631)
                      ||+||+++++++++..|||++++|+++|++.||++++||++|+|+||+++|.++...+.++.           .....++
T Consensus       158 ~Gigy~i~~i~~~~~~yyn~i~aWA~~yl~~sft~~lPW~sC~~s~n~~~C~~~~~s~~~~~-----------~~ek~s~  226 (629)
T KOG3659|consen  158 KGIGYAICLIAFFVGLYYNVIIAWALYYLFTSFTSNLPWESCPNSWNGPNCFDPTWSKNCDE-----------ECEKTSP  226 (629)
T ss_pred             cCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhCCCcccCCCccCccccccCch-----------hhhccch
Confidence            99999999999999999999999999999999999999999999999999986543222110           1113456


Q ss_pred             hhhhhccccccccccCCCCCccCcCCCCCCCcccccchhHHHHHhhhccccccCccccccceecccc--cCcCccCccch
Q psy11511        184 SEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQIS--SGIDQMGDFRW  261 (631)
Q Consensus       184 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~fila~~g~avglgniw~Fp~~vl~~~--~~i~~~g~l~w  261 (631)
                      +++||.                                                      +++++.+  ++++|.|+++|
T Consensus       227 a~ef~~------------------------------------------------------r~~l~l~~~~~~~d~g~~~~  252 (629)
T KOG3659|consen  227 AQEFWY------------------------------------------------------RKVLGLSESHGLDDLGGPSW  252 (629)
T ss_pred             hHHHHH------------------------------------------------------hhcccccccccccccCCCch
Confidence            777877                                                      3444443  45899999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcceecccceeeeechhhHHHHHHHHHhhcccCChhhhhhheeeccccccccHHHHHHHHHHH
Q psy11511        262 ELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQI  341 (631)
Q Consensus       262 ~lv~~l~~~wilv~~~l~kGi~~~~Kv~~~~~~~p~vll~il~~r~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~  341 (631)
                      ++++|++++|+++|++++||+|++||++++++.+|++++.++++|++++||+..|++|+++||++|+.++++|.||++|+
T Consensus       253 ~~~lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtqi  332 (629)
T KOG3659|consen  253 TLALCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLTPDIEKLKEPSVWIDAATQI  332 (629)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchhheecccHHHHhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhHhhhhccccccCCccccceehhhhhHHHHHHHHHHhhhhccccccccccchhhhhhcccccccccccccch
Q psy11511        342 FNSIGIAYGAVITFSSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQI  421 (631)
Q Consensus       342 ffslslg~G~~it~gSy~~~~~ni~~da~~v~~~~~~~sllagl~if~~~g~~~~~~~~~~~~~~~~~~~~s~n~~~~~~  421 (631)
                      |||||+|+|++++||||||+||||+|||++++.+|.++++++|+++|+++|+.....                       
T Consensus       333 ffslg~GfG~L~AfaSyn~F~NNc~rDAll~S~in~~ts~~sgfviFsvLg~~a~~~-----------------------  389 (629)
T KOG3659|consen  333 FFSLGPGFGVLIAFASYNKFHNNCYRDALLTSIINCLTSFLSGFVIFSVLGYMATLI-----------------------  389 (629)
T ss_pred             HhhcCccchhhhhhhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------------
Confidence            999999999999999999999999999999999999999999999999877553221                       


Q ss_pred             hhhhhhhhhhccccccccceeeeeeecccccccCccccc-cccCCCceEeehHHHHHhcCCCchhHHHHHHHHHHHHhhh
Q psy11511        422 IVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIEN-VILDGPGLIFVVYPQALAKLPFPNFWAVLFFFSLLCLALN  500 (631)
Q Consensus       422 ~~d~~~~~~~~~~~~~~~~~~~f~~~G~~~~~~~~~~~~-v~~~GpgL~Fi~lP~~f~~mp~~~~w~~lFFl~l~~aglt  500 (631)
                                                    .+.+.+.++ +..+||||+|++|||+.++||.+.+|+++||+||..+|++
T Consensus       390 ------------------------------y~~~~~~e~~~~~~gp~lafivy~Eait~~~~s~fWs~iFFlmL~~lgl~  439 (629)
T KOG3659|consen  390 ------------------------------YPCNEEIEELVAVAGPGLAFIVYPEAITNMPYSSFWSVIFFLMLLTLGLD  439 (629)
T ss_pred             ------------------------------ccccccHHHhhhhcCCceEEEehhhHHhcCCchHHHHHHHHHHHHHHhhH
Confidence                                          012333333 4679999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHhhhccCCccccccccchhhhHHHHHHHHHHhcccccccccceeehhhHHHhhhHHHHHHHHHHhheeeE
Q psy11511        501 SQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAW  580 (631)
Q Consensus       501 S~i~l~E~iv~~l~d~f~~~~rr~~~~~~~~~~~~c~~~fl~gl~~~t~~G~~~~~l~D~~~~~~~l~~~~l~e~i~v~w  580 (631)
                      |+++-+|.+++.+.|++++..||+   ++..++.+|++.+++|+++++.+|.|+++++|+|..++.+++.+++|+++|.|
T Consensus       440 s~~g~~e~iit~l~d~~~~~l~~~---~e~~~~~~~l~~~~~~l~~~~~~g~y~~~ll~~y~~~~~vl~~Vlie~i~Vsw  516 (629)
T KOG3659|consen  440 SMFGGIEAIITPLLDEFYLSLRKH---RELFTLLVCLFSFLLGLPFITAGGGYVFPLLIDYAAGLLVLFVVLIEAIAVSW  516 (629)
T ss_pred             hhhhhHHHHhccccchhhhHhhhh---HHHHHHHHHHHHHhhhhhhccccceeeehhhHHHhhhhHHHHHHHHHHHHHHh
Confidence            999999999999999996555543   55688999999999999999999999999999999999999999999999999


Q ss_pred             EeCchhHHHHHhhhcCCCCcceeeeeehhhhHHHHHHHHHHH
Q psy11511        581 IYGSDKLARNVHHMTGKFPSLYFRFCWSIAAPLLILIRISLT  622 (631)
Q Consensus       581 vyG~~~~~~di~~m~g~~~~~~~~~~w~~v~Pi~l~~~~~l~  622 (631)
                      +||.+||..|++.|+|++|..||++||..++|+++++++.-.
T Consensus       517 vYG~~rf~~d~~~Mlg~~P~~yw~v~w~~vsp~~ll~if~~~  558 (629)
T KOG3659|consen  517 VYGVRRFSADVKQMLGFRPGWYWRVCWPCVSPVFLLFIFVFS  558 (629)
T ss_pred             hhhHhHHHHHHHHHhCCCCchhHHHHHhhhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999998876543

>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses

Probab=100.00  E-value=1.8e-95  Score=819.25  Aligned_cols=465  Identities=41%  Similarity=0.870  Sum_probs=350.5

Q ss_pred             ccCCccccceEEeeceeeeEecC------------ceeehHHHHHHHHHHhHHHHHHHHHhhcccCCChHHHHhhhcccc
Q psy11511         36 VSDWTSSFKIEVPLQYCTSIVGN------------IRVFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFF  103 (631)
Q Consensus        36 ~~~w~s~~~~~~~~~~~~~~~gn------------GgaFlipY~i~l~liGiPll~lElalGQ~~r~g~i~~~~~l~p~~  103 (631)
                      |++|+||.++++++.+.++|+||            ||+|++||+++++++|+|++++|+++||++|+|++++|+|++|++
T Consensus         1 R~~w~~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~~~~~~~~~~~p~~   80 (523)
T PF00209_consen    1 REKWSSKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRSGPIGAWKRLCPIF   80 (523)
T ss_dssp             ----S-HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSHHHS-HHHHHH
T ss_pred             CCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            78899999999999999999997            689999999999999999999999999999999999999999999


Q ss_pred             ccccchhhHHHHHhhhHHHHHHHHHHHHHHHhcccCCCCCcCCCCCCCCcccCCCCCCCCCccccccccCCCCCCCCCCc
Q psy11511        104 KGAGISSVIISFFMSTYYNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSKTP  183 (631)
Q Consensus       104 ~GiG~~~~l~~~~i~~YY~vi~aW~l~Y~~~sf~~~lPW~~C~~~wnt~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (631)
                      ||+|+++++.++++++||+++++|+++|+++|+++++||++|+|+||+++|.+..+.++...   ....|.+   ...++
T Consensus        81 ~giG~~~~~~~~~~~~yy~vi~~w~l~Y~~~s~~~~lpw~~C~~~~n~~~c~~~~~~~~~~~---~~~~~~~---~~~~~  154 (523)
T PF00209_consen   81 KGIGYAMVLISFLIAIYYSVIVAWALYYFFQSFTGPLPWSSCNNSWNTPNCYDIYSNCNCSN---SSSYNFT---QRISP  154 (523)
T ss_dssp             HTHHHH---HHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccc---ccccc
Confidence            99999999999999999999999999999999999999999999999999986433221110   0000100   12345


Q ss_pred             hhhhhccccccccccCCCCCccCcCCCCCCCcccccchhHHHHHhhhccccccCccccccceecccccCcCccCccchHH
Q psy11511        184 SEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSGIDQMGDFRWEL  263 (631)
Q Consensus       184 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~fila~~g~avglgniw~Fp~~vl~~~~~i~~~g~l~w~l  263 (631)
                      +++||+                                                      +++++.++++++.|+++|++
T Consensus       155 ~~~ff~------------------------------------------------------~~vl~~s~~i~~~g~~~~~l  180 (523)
T PF00209_consen  155 AEEFFY------------------------------------------------------REVLQISDGISDFGSLSWQL  180 (523)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccc------------------------------------------------------ccccccccccccccchhHHH
Confidence            566666                                                      56778888899999999999


Q ss_pred             HHHHHHHHHHHHHHhhcceecccceeeeechhhHHHHHHHHHhhcccCChhhhhhheeeccccccccHHHHHHHHHHHHH
Q psy11511        264 VACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFN  343 (631)
Q Consensus       264 v~~l~~~wilv~~~l~kGi~~~~Kv~~~~~~~p~vll~il~~r~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ff  343 (631)
                      +.+++++|+++++++.||+|+.+|+++++.++|+++++++++|++|+||+.+|++|+++|||+++.|+++|.+|++|+||
T Consensus       181 ~~~l~~~w~iv~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ff  260 (523)
T PF00209_consen  181 LLCLFIVWLIVFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLDPKVWIAALGQVFF  260 (523)
T ss_dssp             HHHHHHHHHHHTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhHhhhhccccccCCccccceehhhhhHHHHHHHHHHhhhhccccccccccchhhhhhcccccccccccccchhh
Q psy11511        344 SIGIAYGAVITFSSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIV  423 (631)
Q Consensus       344 slslg~G~~it~gSy~~~~~ni~~da~~v~~~~~~~sllagl~if~~~g~~~~~~~~~~~~~~~~~~~~s~n~~~~~~~~  423 (631)
                      |+|+|+|++++||||+|+|+|+.||+.++++.|+++|+++|+++|+++                                
T Consensus       261 sl~ig~G~~it~~Sy~~~~~n~~~~a~~v~~~~~~~sllag~~if~~~--------------------------------  308 (523)
T PF00209_consen  261 SLSIGFGIMITYGSYNKFKNNIFRDALIVAFINTLVSLLAGLVIFSVL--------------------------------  308 (523)
T ss_dssp             HTTTTSSHHHHHHTTS-TTS-SHHHHHHHHHHHHHHHHTTGTHHHHHH--------------------------------
T ss_pred             ccCCCcceEEEEcCcCCCCccccccceEEEcCchhhhHhHHHHHHhHH--------------------------------
Confidence            999999999999999999999999999999999999999999999953                                


Q ss_pred             hhhhhhhhccccccccceeeeeeecccccccCccccccccCCCceEeehHHHHHhcCCCchhHHHHHHHHHHHHhhhhhh
Q psy11511        424 DTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPNFWAVLFFFSLLCLALNSQF  503 (631)
Q Consensus       424 d~~~~~~~~~~~~~~~~~~~f~~~G~~~~~~~~~~~~v~~~GpgL~Fi~lP~~f~~mp~~~~w~~lFFl~l~~agltS~i  503 (631)
                                              |+++.+.+.+++++.++||+|+|+++|+++++||.+++|+++||++++++|++|++
T Consensus       309 ------------------------g~~a~~~~~~i~~v~~~g~~L~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i  364 (523)
T PF00209_consen  309 ------------------------GFLANELGVPISDVPESGPGLAFIVLPEAFSQMPGGRFWAILFFLMLFLAGLTSQI  364 (523)
T ss_dssp             ------------------------HHHHHHHHHHHHH--H-CHHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------hhcccCCCCChhHhhCcCCCchHHHHHHHHHcCCCCcChHHHHHHHHHHHHhhhcC
Confidence                                    45556667777788889999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhhhccCCccccccccchhhhHHHHHHHHHHhcccccccccceeehhhHHHhhhHHHHHHHHHHhheeeEEeC
Q psy11511        504 ALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYG  583 (631)
Q Consensus       504 ~l~E~iv~~l~d~f~~~~rr~~~~~~~~~~~~c~~~fl~gl~~~t~~G~~~~~l~D~~~~~~~l~~~~l~e~i~v~wvyG  583 (631)
                      +++|++++.++|++++. ||   +|+.++..+|++++++|+|+++++|.|++|++|++.+++.+++++++|+++++|+||
T Consensus       365 ~~~E~iv~~l~d~~~~~-~~---~r~~~~~~v~~~~~l~gl~~~t~~G~~~~~~~d~~~~~~~l~~~~l~e~i~v~wvyG  440 (523)
T PF00209_consen  365 SMLEVIVSALMDEFPIS-RK---KRKKVTLIVCLVGFLLGLPFCTQGGIYIFDLLDDYVGSISLLIIALLECIAVGWVYG  440 (523)
T ss_dssp             HHHHHHHHHHHHTST--------HHHHHHHHHHHHHHHHHHHHHBT---THHHHHHHHTTTHHHHHHHHHHHHHHHTTST
T ss_pred             CceeceeEeeeecCccc-hh---hccceeHHHhhhHeEeccccccccHHHhcchHhhcchhHHHHHHHHHHHHheecccc
Confidence            99999999999999742 22   244577889999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHhhhcCCCCcceeeeeehhhhHHHHHHHHH
Q psy11511        584 SDKLARNVHHMTGKFPSLYFRFCWSIAAPLLILIRIS  620 (631)
Q Consensus       584 ~~~~~~di~~m~g~~~~~~~~~~w~~v~Pi~l~~~~~  620 (631)
                      .||+.+|++.|.|++++.+|+++|||++|+++++++.
T Consensus       441 ~~~~~~di~~~~g~~~~~~w~~~w~~v~Pi~ll~ili  477 (523)
T PF00209_consen  441 WDRFREDINEMLGFKPGKFWKFLWKYVTPIILLVILI  477 (523)
T ss_dssp             HHHHHHHHHTT-SS---THHHHHHHTHHHHHHHHHHH
T ss_pred             ceehhhhhcccccccHHHHHHhhEEEeecccccceee
Confidence            9999999999999999999999999999999887654

High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....

>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]

Probab=100.00  E-value=4.8e-79  Score=649.11  Aligned_cols=412  Identities=26%  Similarity=0.540  Sum_probs=350.8

Q ss_pred             cccCCccccceEEeeceeeeEecC------------ceeehHHHHHHHHHHhHHHHHHHHHhhcccCCChHHHHhhhc--
Q psy11511         35 KVSDWTSSFKIEVPLQYCTSIVGN------------IRVFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLC--  100 (631)
Q Consensus        35 ~~~~w~s~~~~~~~~~~~~~~~gn------------GgaFlipY~i~l~liGiPll~lElalGQ~~r~g~i~~~~~l~--  100 (631)
                      +||+|+||.+|+++++++|+|+||            ||||++||+++++++|+|++++|+++||++|++++++++|+.  
T Consensus         4 ~re~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~~   83 (439)
T COG0733           4 KREQWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAPK   83 (439)
T ss_pred             cccchhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhccC
Confidence            344555555555555555555554            899999999999999999999999999999999999999998  


Q ss_pred             cccccccchhhHHHHHhhhHHHHHHHHHHHHHHHhcccCCCCCcCCCCCCCCcccCCCCCCCCCccccccccCCCCCCCC
Q psy11511        101 PFFKGAGISSVIISFFMSTYYNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPS  180 (631)
Q Consensus       101 p~~~GiG~~~~l~~~~i~~YY~vi~aW~l~Y~~~sf~~~lPW~~C~~~wnt~~C~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (631)
                      ++|+++|+..+++++.+++||+||.+|.+.|++.|+++.+| .                                    +
T Consensus        84 ~~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~-~------------------------------------~  126 (439)
T COG0733          84 KKWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALP-D------------------------------------T  126 (439)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-C------------------------------------C
Confidence            56999999999999999999999999999999999998764 1                                    0


Q ss_pred             CCchhhhhccccccccccCCCCCccCcCCCCCCCcccccchhHHHHHhhhccccccCccccccceecccccCcCccC-cc
Q psy11511        181 KTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSGIDQMG-DF  259 (631)
Q Consensus       181 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~fila~~g~avglgniw~Fp~~vl~~~~~i~~~g-~l  259 (631)
                      ....+++|.            +.+                                                 +++. .+
T Consensus       127 ~~~~~~~f~------------~~~-------------------------------------------------~~~~~~~  145 (439)
T COG0733         127 GEQFAQLFG------------QTI-------------------------------------------------SNPGLAV  145 (439)
T ss_pred             hhHHHHHHH------------HHh-------------------------------------------------cCchHHH
Confidence            011223333            000                                                 0011 23


Q ss_pred             chHHHHHHHHHHHHHHHHhhcceecccceeeeechhh--HHHHHHHHHhhcccCChhhhhhheeeccccccccHHHHHHH
Q psy11511        260 RWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIP--FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNA  337 (631)
Q Consensus       260 ~w~lv~~l~~~wilv~~~l~kGi~~~~Kv~~~~~~~p--~vll~il~~r~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A  337 (631)
                      .|+++. +++.+.++..++.|||||.+|++     ||  +++++++++|++|||||.+|++|+++||||++.|+++|.+|
T Consensus       146 ~~~~~~-~~lt~~iv~~GV~~GIEk~~kim-----MP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~A  219 (439)
T COG0733         146 IFHLLF-LVLTALIVSRGVKKGIEKANKIM-----MPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAA  219 (439)
T ss_pred             HHHHHH-HHHHHHHHHHhHHhhHHHHHHHH-----HHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHH
Confidence            344444 44455578999999999999995     66  67889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhHhhhhccccccCCccccceehhhhhHHHHHHHHHHhhhhccccccccccchhhhhhccccccccccc
Q psy11511        338 GAQIFNSIGIAYGAVITFSSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKY  417 (631)
Q Consensus       338 ~~Q~ffslslg~G~~it~gSy~~~~~ni~~da~~v~~~~~~~sllagl~if~~~g~~~~~~~~~~~~~~~~~~~~s~n~~  417 (631)
                      +||+|||||+|+|+|+|||||.+|++|+.++++.++..|+.+|++||++|||+++                         
T Consensus       220 lGQ~FFsLSlG~g~mitYsSYL~k~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f-------------------------  274 (439)
T COG0733         220 LGQAFFSLSLGFGIMITYSSYLSKKSDLVSSALSIVLLNTLISLLAGLVIFPALF-------------------------  274 (439)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence            9999999999999999999999999999999999999999999999999999632                         


Q ss_pred             ccchhhhhhhhhhhccccccccceeeeeeecccccccCccccccccCCCceEeehHHHHHhcCCCchhHHHHHHHHHHHH
Q psy11511        418 NNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPNFWAVLFFFSLLCL  497 (631)
Q Consensus       418 ~~~~~~d~~~~~~~~~~~~~~~~~~~f~~~G~~~~~~~~~~~~v~~~GpgL~Fi~lP~~f~~mp~~~~w~~lFFl~l~~a  497 (631)
                                                         ..+.+    +++||||+|+++|++|+|||.|++++++||+++++|
T Consensus       275 -----------------------------------~~g~~----~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fA  315 (439)
T COG0733         275 -----------------------------------SFGAD----ASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFA  315 (439)
T ss_pred             -----------------------------------HhccC----CCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence                                               11222    479999999999999999999999999999999999


Q ss_pred             hhhhhhhhHHHHHHhhhccCCccccccccchhhhHHHHHHHHHHhcccccccccceeehhhHHHhhhHHHHHHHHHHhhe
Q psy11511        498 ALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVA  577 (631)
Q Consensus       498 gltS~i~l~E~iv~~l~d~f~~~~rr~~~~~~~~~~~~c~~~fl~gl~~~t~~G~~~~~l~D~~~~~~~l~~~~l~e~i~  577 (631)
                      |+||.++++|++++.++|+++ .+||+      ++..++.+.|++|+|+.+..|++++|.+|+.++++.+|+.+++++++
T Consensus       316 alTS~iSmlE~~va~l~~~~~-~~R~~------a~~~~~~~~fl~gi~~~ls~g~~~fD~~D~~~s~~l~plgaL~~~i~  388 (439)
T COG0733         316 ALTSAISMLEVLVAALIDKFG-ISRKK------ATWLIGILIFLLGIPSILSFGLSIFDLVDFVVSNILMPLGALLIAIF  388 (439)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC-cchHH------HHHHHHHHHHHHhHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999995 44443      67888899999999999999999999999999999999999999999


Q ss_pred             eeEEeCchhHHHHHhhhcCCCCcceeeeeehhhhHHHHHHHHHHH
Q psy11511        578 VAWIYGSDKLARNVHHMTGKFPSLYFRFCWSIAAPLLILIRISLT  622 (631)
Q Consensus       578 v~wvyG~~~~~~di~~m~g~~~~~~~~~~w~~v~Pi~l~~~~~l~  622 (631)
                      ++|+++.|+.+++++.... +...+|+++.||++|++++.++...
T Consensus       389 ~~w~~~~~~~~~~~~~~s~-~~~~~w~~~vr~i~Pi~i~~vl~~~  432 (439)
T COG0733         389 VGWVLKKELLREELNAGSA-KLFKIWLYLVRYIAPIVILVVLILG  432 (439)
T ss_pred             HHHhcCHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988532 3445799999999999988766543

>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]

Probab=99.17  E-value=3.1e-11  Score=130.25  Aligned_cols=116  Identities=25%  Similarity=0.386  Sum_probs=87.9

Q ss_pred             cccccchhHHHHHhhhccccccCccccccceecccccCcCccCccchHHHHHHHHHHHHHHHHhhcceecccceeeeech
Q psy11511        215 KRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTAT  294 (631)
Q Consensus       215 ~~~~w~s~~~fila~~g~avglgniw~Fp~~vl~~~~~i~~~g~l~w~lv~~l~~~wilv~~~l~kGi~~~~Kv~~~~~~  294 (631)
                      +||+|.||++|||||+|+|||+||+|||||.+.+++++                 +.+++|++           ..++..
T Consensus         4 ~re~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGg-----------------AFll~yli-----------~~l~~G   55 (439)
T COG0733           4 KREQWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGG-----------------AFLLPYLI-----------FLLLVG   55 (439)
T ss_pred             cccchhhHHHHHHHHHHHHhcccccccCCeEeeecCcc-----------------hHHHHHHH-----------HHHHHh
Confidence            68999999999999999999999999999999999887                 23344432           222335


Q ss_pred             hhHHHHHHHHHhhcccCChhhhhhhee-eccccccccHHHHHHHHHHHHHHHhhhhhHhhhhcccc
Q psy11511        295 IPFLLIFVFLCFSLTLDGSEIGLRYFF-LPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYN  359 (631)
Q Consensus       295 ~p~vll~il~~r~ltl~ga~~Gl~~~~-~pd~~~l~~~~vW~~A~~Q~ffslslg~G~~it~gSy~  359 (631)
                      +|.++.-....|.-. .++.+..+..- .+.|+.+....+...-..-+||+.=.||..-..+.|-+
T Consensus        56 iPlli~Ef~iGr~~~-~~~~~a~~~l~~~~~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~t  120 (439)
T COG0733          56 IPLLLAEFAIGRRGR-KNAVGAFRKLAPKKKWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLT  120 (439)
T ss_pred             HHHHHHHHHhhhhcC-CChhHHHHHhccCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            788887777777643 33444444433 36677777677888999999999999999877777665

>KOG3659|consensus

Probab=98.63  E-value=5.1e-08  Score=107.81  Aligned_cols=44  Identities=39%  Similarity=0.602  Sum_probs=40.7

Q ss_pred             ccccccccccchhhhhhhhhhhccccccccceeeeeeecccccc
Q psy11511        410 FISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYE  453 (631)
Q Consensus       410 ~~~s~n~~~~~~~~d~~~~~~~~~~~~~~~~~~~f~~~G~~~~~  453 (631)
                      +.+||||++|++.+|....+++|..++++.+.++|+++|+++..
T Consensus       345 AfaSyn~F~NNc~rDAll~S~in~~ts~~sgfviFsvLg~~a~~  388 (629)
T KOG3659|consen  345 AFASYNKFHNNCYRDALLTSIINCLTSFLSGFVIFSVLGYMATL  388 (629)
T ss_pred             hhhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            55899999999999999999999999999999999999988654

>KOG3660|consensus

Probab=98.42  E-value=1.6e-07  Score=107.06  Aligned_cols=115  Identities=28%  Similarity=0.603  Sum_probs=86.2

Q ss_pred             CcccccchhHHHHHhhhccccccCccccccceecccccCcCccCccchHHHHHHHHHHHHHHHHhhcceecccceeeeec
Q psy11511        214 RKRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTA  293 (631)
Q Consensus       214 ~~~~~w~s~~~fila~~g~avglgniw~Fp~~vl~~~~~i~~~g~l~w~lv~~l~~~wilv~~~l~kGi~~~~Kv~~~~~  293 (631)
                      +.|++|+||.+|+|+|+|.+||+||+||||++++++++|.     +        ++.++++.               +..
T Consensus        32 ~~R~~w~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGga-----F--------LIpY~i~l---------------~l~   83 (629)
T KOG3660|consen   32 PDRGNWKSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGA-----F--------LIPYLIVL---------------FLF   83 (629)
T ss_pred             cccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCch-----H--------HHHHHHHH---------------HHh
Confidence            4799999999999999999999999999999999999862     1        11222111               112


Q ss_pred             hhhHHHHHHHHHhhcccCChhhhhhhe-eeccccccccHHHHHHHHHHHHHHHhhhhhHhhhhcccc
Q psy11511        294 TIPFLLIFVFLCFSLTLDGSEIGLRYF-FLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYN  359 (631)
Q Consensus       294 ~~p~vll~il~~r~ltl~ga~~Gl~~~-~~pd~~~l~~~~vW~~A~~Q~ffslslg~G~~it~gSy~  359 (631)
                      .+|.+.|-+.+..-.. .|+..  .+. +.|=++-..-..++..+..-+.|++.+++....-+.|..
T Consensus        84 GlP~~~LE~slGQf~~-~g~v~--~wrri~Pif~GvG~a~v~~~~~~~~Yy~viiaw~l~Yl~~sf~  147 (629)
T KOG3660|consen   84 GLPLFFLEMSLGQFTS-QGPVS--VWRRICPIFKGVGWASVVISALLAIYYIVILAWALYYLFSSFT  147 (629)
T ss_pred             cchHHHHHHHHhhhhc-CChHH--HHHHhChHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            5787777666654322 23222  244 778888888889999999999999999999888777765

>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses

Probab=98.24  E-value=2.4e-07  Score=105.15  Aligned_cols=115  Identities=29%  Similarity=0.584  Sum_probs=71.8

Q ss_pred             ccccchhHHHHHhhhccccccCccccccceecccccCcCccCccchHHHHHHHHHHHHHHHHhhcceecccceeeeechh
Q psy11511        216 RDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATI  295 (631)
Q Consensus       216 ~~~w~s~~~fila~~g~avglgniw~Fp~~vl~~~~~i~~~g~l~w~lv~~l~~~wilv~~~l~kGi~~~~Kv~~~~~~~  295 (631)
                      ||+|+||.+|++||+|+|||+||+||||+.+.+++++                 +.++.|+           +..+...+
T Consensus         1 R~~w~~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~-----------------~Fli~y~-----------~~~~~~gi   52 (523)
T PF00209_consen    1 REKWSSKIGFILACIGYAVGLGNIWRFPYLCYENGGG-----------------AFLIPYL-----------LFLLLVGI   52 (523)
T ss_dssp             ----S-HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTH-----------------HHHHHHH-----------HHHHHTHH
T ss_pred             CCccccccccccccccccccccccccccccccccccc-----------------ccccccc-----------cccccccc
Confidence            7899999999999999999999999999999988764                 1222232           11222357


Q ss_pred             hHHHHHHHHHhhcccCChhhhhhheeeccccccccHHHHHHHHHHHHHHHhhhhhHhhhhccccc
Q psy11511        296 PFLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNK  360 (631)
Q Consensus       296 p~vll~il~~r~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffslslg~G~~it~gSy~~  360 (631)
                      |.+.+...+.|-.. .|..+.. ....|.++-+.-..+....+..++|+.-+|+-....+.|..+
T Consensus        53 P~~~lE~~lGq~~~-~~~~~~~-~~~~p~~~giG~~~~~~~~~~~~yy~vi~~w~l~Y~~~s~~~  115 (523)
T PF00209_consen   53 PLLYLELALGQYSR-SGPIGAW-KRLCPIFKGIGYAMVLISFLIAIYYSVIVAWALYYFFQSFTG  115 (523)
T ss_dssp             HHHHHHHHHHHHHH-TTSHHHS--HHHHHHHTHHHH---HHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             cccccccccccccc-ccccccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence            88888777776543 2222221 144677776666667777778888888888877766666543

High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....

>TIGR00814 stp serine transporter

Probab=92.31  E-value=8.3  Score=42.52  Aligned_cols=26  Identities=19%  Similarity=0.139  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhHhhhhc-cc
Q psy11511        332 KVWVNAGAQIFNSIGIAYGAVITFS-SY  358 (631)
Q Consensus       332 ~vW~~A~~Q~ffslslg~G~~it~g-Sy  358 (631)
                      +....|+-..++|.+ +...+-++. +|
T Consensus       186 ~~i~~alpv~~~SF~-~~~iIssl~~~~  212 (397)
T TIGR00814       186 KTLWLTIPVMVFSFN-HSPIISSFAISY  212 (397)
T ss_pred             HHHHHHHHHHHHHHH-ccccchHHHHHH
Confidence            456688889999996 788888887 66

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK11375 allantoin permease; Provisional

Probab=85.68  E-value=25  Score=39.77  Aligned_cols=48  Identities=4%  Similarity=0.081  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHhhcceecccceeeeechhhHHHHHHHHHhhcccC
Q psy11511        264 VACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFLCFSLTLD  311 (631)
Q Consensus       264 v~~l~~~wilv~~~l~kGi~~~~Kv~~~~~~~p~vll~il~~r~ltl~  311 (631)
                      ..+.++.|++.......|.|...|...+..++-+++++.+.+..++.-
T Consensus       159 ~i~~~i~~~l~~~~~~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~  206 (484)
T PRK11375        159 LITFLIFWLVNVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLV  206 (484)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            445555666666666777777776554333333334444555555543

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=82.81  E-value=68  Score=33.86  Aligned_cols=91  Identities=16%  Similarity=0.227  Sum_probs=49.5

Q ss_pred             HHHHHhhcceecccceeeeechhhHHHHHHHHHhhcccCChhhhhhheeeccccccccHHHHHHHHHHHHHHHhhhhhHh
Q psy11511        273 LVYFALWKSVRSSGRVLYFTATIPFLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAV  352 (631)
Q Consensus       273 lv~~~l~kGi~~~~Kv~~~~~~~p~vll~il~~r~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffslslg~G~~  352 (631)
                      ++..+..+|+|..+|...+  .+|..++..+++-.+..+..+-   ..+.|=++.  +.+-...+.-...+.. .|.-.+
T Consensus       123 ~~~y~a~~G~e~i~R~~~~--~~~~~~i~~~~i~~~~~~~~~~---~~l~P~~~~--g~~~i~~~~~~~~~~~-~~~~~~  194 (320)
T PF03845_consen  123 VAAYAARKGIEVIARVAEI--LFPIFLILLLLILLLSIPNIDW---DNLLPVLES--GIKPILKGSLVISFPF-GGIEIL  194 (320)
T ss_pred             HHHHHHhcCHHHHHHHHHH--HHHHHHHHHHHHHHHhcccCCH---HHeeCcccC--ChHHHHHHHHHHHHHH-HHHHHH
Confidence            4556678999999885432  4554444444444444443321   234554443  2233334444444444 255556


Q ss_pred             hhhccccccCCccccceeh
Q psy11511        353 ITFSSYNKYNNQIIVDTMV  371 (631)
Q Consensus       353 it~gSy~~~~~ni~~da~~  371 (631)
                      ..+..|.+++++..|....
T Consensus       195 l~~~p~~~~~~~~~k~~~~  213 (320)
T PF03845_consen  195 LFLFPFVKDKKKLKKSLLI  213 (320)
T ss_pred             HHHHHHcCCchHHHHHHHH
Confidence            6677888888777775544

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	631
3gjc_A	513	Crystal Structure Of The E290s Mutant Of Leut With		2e-09
4fxz_A	513	Crystal Structure Of Leut-F253a Bound To L-Leucine		3e-09
3tu0_A	519	Crystal Structure Of T355v, S354a, K288a Leut Mutan		4e-09
3tt1_A	519	Crystal Structure Of Leut In The Outward-Open Confo		4e-09
3qs5_A	519	Crystal Structure Of Leut Mutant I359q Bound To Sod		5e-09
2a65_A	519	Crystal Structure Of Leutaa, A Bacterial Homolog Of		6e-09
3gjd_A	515	Crystal Structure Of Leut With Bound Og Length = 51		6e-09
2qju_A	511	Crystal Structure Of An Nss Homolog With Bound Anti		6e-09
3f3a_A	508	Crystal Structure Of Leut Bound To L-Tryptophan And		6e-09
3f3d_A	517	Crystal Structure Of Leut Bound To L-Methionine And		6e-09
3mpq_A	507	I204r1 Mutant Of Leut Length = 507		6e-09
3mpn_A	507	F177r1 Mutant Of Leut Length = 507		7e-09
3qs6_A	519	Crystal Structure Of Leut Mutant F259v,I359q Bound		1e-08
3qs4_A	519	Crystal Structure Of Leut Mutant F259v Bound To Sod		2e-08
3tt3_A	519	Crystal Structure Of Leut In The Inward-Open Confor		4e-08

>pdb|3GJC|A Chain A, Crystal Structure Of The E290s Mutant Of Leut With Bound Og Length = 513

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
           FL+I VFL  +     ++ GL + + P+FE L D  VW+ A  QIF ++ + +GA+IT++
Sbjct: 208 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYA 266
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
           SY + +  I++  +  + +N   SV++G
Sbjct: 267 SYVRKDQDIVLSGLTAATLNEKASVILG 294

>pdb|4FXZ|A Chain A, Crystal Structure Of Leut-F253a Bound To L-Leucine From Lipid Bicelles Length = 513

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
           FL+I VFL  +     ++ GL + + P+FE L D  VW+ A  QIF ++ + +GA+IT++
Sbjct: 208 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFATLSLGFGAIITYA 266
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
           SY + +  I++  +  + +N    V++G
Sbjct: 267 SYVRKDQDIVLSGLTAATLNEKAEVILG 294

>pdb|3TU0|A Chain A, Crystal Structure Of T355v, S354a, K288a Leut Mutant In Complex With Alanine And Sodium Length = 519

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
           FL+I VFL  +     ++ GL + + P+FE L D  VW+ A  QIF ++ + +GA+IT++
Sbjct: 208 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYA 266
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
           SY + +  I++  +  + +N    V++G
Sbjct: 267 SYVRKDQDIVLSGLTAATLNEAAEVILG 294

>pdb|3TT1|A Chain A, Crystal Structure Of Leut In The Outward-Open Conformation In Complex With Fab Length = 519

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
           FL+I VFL  +     ++ GL + + P+FE L D  VW+ A  QIF ++ + +GA+IT++
Sbjct: 208 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYA 266
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
           SY + +  I++  +  + +N    V++G
Sbjct: 267 SYVRKDQDIVLSGLTAATLNEAAEVILG 294

>pdb|3QS5|A Chain A, Crystal Structure Of Leut Mutant I359q Bound To Sodium And L- Tryptophan Length = 519

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
           FL+I VFL  +     ++ GL + + P+FE L D  VW+ A  QIF ++ + +GA+IT++
Sbjct: 208 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYA 266
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
           SY + +  I++  +  + +N    V++G
Sbjct: 267 SYVRKDQDIVLSGLTAATLNEKAEVILG 294

>pdb|2A65|A Chain A, Crystal Structure Of Leutaa, A Bacterial Homolog Of Na+/cl--dependent Neurotransmitter Transporters Length = 519

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
           FL+I VFL  +     ++ GL + + P+FE L D  VW+ A  QIF ++ + +GA+IT++
Sbjct: 208 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYA 266
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
           SY + +  I++  +  + +N    V++G
Sbjct: 267 SYVRKDQDIVLSGLTAATLNEKAEVILG 294

>pdb|3GJD|A Chain A, Crystal Structure Of Leut With Bound Og Length = 515

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
           FL+I VFL  +     ++ GL + + P+FE L D  VW+ A  QIF ++ + +GA+IT++
Sbjct: 208 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYA 266
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
           SY + +  I++  +  + +N    V++G
Sbjct: 267 SYVRKDQDIVLSGLTAATLNEKAEVILG 294

>pdb|2QJU|A Chain A, Crystal Structure Of An Nss Homolog With Bound Antidepressant Length = 511

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
           FL+I VFL  +     ++ GL + + P+FE L D  VW+ A  QIF ++ + +GA+IT++
Sbjct: 204 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYA 262
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
           SY + +  I++  +  + +N    V++G
Sbjct: 263 SYVRKDQDIVLSGLTAATLNEKAEVILG 290

>pdb|3MPQ|A Chain A, I204r1 Mutant Of Leut Length = 507

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
           FL+I VFL  +     ++ GL + + P+FE L D  VW+ A  QIF ++ + +GA+IT++
Sbjct: 205 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYA 263
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
           SY + +  I++  +  + +N    V++G
Sbjct: 264 SYVRKDQDIVLSGLTAATLNEKAEVILG 291

>pdb|3MPN|A Chain A, F177r1 Mutant Of Leut Length = 507

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
           FL+I VFL  +     ++ GL + + P+FE L D  VW+ A  QIF ++ + +GA+IT++
Sbjct: 204 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYA 262
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
           SY + +  I++  +  + +N    V++G
Sbjct: 263 SYVRKDQDIVLSGLTAATLNEKAEVILG 290

>pdb|3QS6|A Chain A, Crystal Structure Of Leut Mutant F259v,I359q Bound To Sodium And L- Tryptophan Length = 519

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
           FL+I VFL  +     ++ GL + + P+FE L D  VW+ A  QIF ++ +  GA+IT++
Sbjct: 208 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGVGAIITYA 266
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
           SY + +  I++  +  + +N    V++G
Sbjct: 267 SYVRKDQDIVLSGLTAATLNEKAEVILG 294

>pdb|3QS4|A Chain A, Crystal Structure Of Leut Mutant F259v Bound To Sodium And L- Tryptophan Length = 519

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
           FL+I VFL  +     ++ GL + + P+FE L D  VW+ A  QIF ++ +  GA+IT++
Sbjct: 208 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGVGAIITYA 266
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
           SY + +  I++  +  + +N    V++G
Sbjct: 267 SYVRKDQDIVLSGLTAATLNEKAEVILG 294

>pdb|3TT3|A Chain A, Crystal Structure Of Leut In The Inward-Open Conformation In Complex With Fab Length = 519

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
           FL+I VFL  +     ++ GL + + P+FE L D  VW+ A  QIF ++ + +GA+IT++
Sbjct: 208 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYA 266
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
           S  + +  I++  +  + +N    V++G
Sbjct: 267 SAVRKDQDIVLSGLTAATLNEAAEVILG 294

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	631
2a65_A	519	Leutaa, Na(+):neurotransmitter symporter (SNF fami	9e-33
2a65_A	519	Leutaa, Na(+):neurotransmitter symporter (SNF fami	5e-11
2a65_A	519	Leutaa, Na(+):neurotransmitter symporter (SNF fami	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Length = 519

 Score =  131 bits (332), Expect = 9e-33
 Identities = 59/386 (15%), Positives = 125/386 (32%), Gaps = 80/386 (20%)

Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRS----SGRVLYFTATIPF 297
           F +  + +  G + +            ++  +    L + +        ++      +P 
Sbjct: 147 FLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIA-----MPT 201

Query: 298 LLIFVFLC--FSLTLD----GSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGA 351
           L I           L+     +  GL + + P+FE L D  VW+ A  QIF ++ + +GA
Sbjct: 202 LFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGA 261

Query: 352 VITFSSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFI 411
           +                                         ITY               
Sbjct: 262 I-----------------------------------------ITY--------------- 265

Query: 412 SSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFV 471
           +SY + +  I++  +  + +N    V++G  I I      +    ++         L F+
Sbjct: 266 ASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFI 325

Query: 472 VYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIV 531
             P   ++     F   L+FF L    L S  A+++ ++  ++D     + R     +  
Sbjct: 326 TLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELK--LSR-----KHA 378

Query: 532 VLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNV 591
           VL    + FF                +D +  +  V++    E++   WI+G+DK    +
Sbjct: 379 VLWTAAIVFFSAHL--VMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEI 436

Query: 592 HHMTGKFPSLYFRFCWSIAAPLLILI 617
           +          + +      P  + +
Sbjct: 437 NRGGIIKVPRIYYYVMRYITPAFLAV 462

>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Length = 519

 Score = 64.3 bits (157), Expect = 5e-11
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLC------PFFKGAGISSVIISF 115
           F++PY I   L GIP++++E A+G++      G    +        F K  G+  + I  
Sbjct: 43  FMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPL 102

Query: 116 FMSTYYNVLIAYSLYYFSTSFRSQLP 141
            ++ YY  + +++L +        +P
Sbjct: 103 VVAIYYVYIESWTLGFAIKFLVGLVP 128

>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Length = 519

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 215 KRDHWTSKVQFILACVGYSIGIGNLWRFP 243
           KR+HW +++  ILA  G ++G+GN  RFP
Sbjct: 4   KREHWATRLGLILAMAGNAVGLGNFLRFP 32

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 4e-05
 Identities = 68/514 (13%), Positives = 124/514 (24%), Gaps = 154/514 (29%)

Query: 184 SEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWRFP 243
             E    S          D + +    F                          N+ R  
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-----------------------NVSR-L 134

Query: 244 HKVLQISSGIDQMGDFRWELVACSFVSWILVY----FALWKSVRSSGRVLYFTATIPFLL 299
              L++   + ++               +L+         K+  +   V     +     
Sbjct: 135 QPYLKLRQALLELRP----------AKNVLIDGVLGSG--KTWVAL-DVC---LSYKVQC 178

Query: 300 IFVFLCFSLTL-----DGSEI----GLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYG 350
              F  F L L       + +     L Y   PN+   SDH       + I   I     
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH------SSNIKLRIHSIQA 232

Query: 351 AVITFSSYNKYNNQ-IIVDTMVVSIINTITSVLIGVFIFIT---------IGNITYEHET 400
            +        Y N  +++    V       +  +   I +T         +   T  H +
Sbjct: 233 ELRRLLKSKPYENCLLVLLN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 401 SIENVILDGFISSYN-----KYNNQIIVDT-MVVSIINTITSVLIGVFI---FITIGNIT 451
              +                KY +    D    V   N     +I   I     T  N  
Sbjct: 291 LDHH--SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-- 346

Query: 452 YEH----------ETSIENVILDGPGLI------FVVYPQALAKLP---FPNFWAVLFFF 492
           ++H          E+S+    L+ P           V+P + A +P       W      
Sbjct: 347 WKHVNCDKLTTIIESSLNV--LE-PAEYRKMFDRLSVFPPS-AHIPTILLSLIWF----- 397

Query: 493 SLLCLALNSQFALVEVVVTSIQDGF--PRWIKRYLV-CHEIVVLVVCIVSFFFGLPYVTQ 549
                  +   + V VVV  +       +  K   +    I + +   +        + +
Sbjct: 398 -------DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE---NEYALHR 447

Query: 550 GGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIY---GSDKLARNVHHMTGK--------F 598
                  ++DHY                  + Y   G        HH+           F
Sbjct: 448 ------SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG--------HHLKNIEHPERMTLF 493

Query: 599 PSLYFRFCWS----IAAPLLILIRISLTHLLGQL 628
             ++  F +                S+ + L QL
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	631
2a65_A	519	Leutaa, Na(+):neurotransmitter symporter (SNF fami	100.0
2a65_A	519	Leutaa, Na(+):neurotransmitter symporter (SNF fami	98.94

>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...

Probab=100.00  E-value=9.2e-94  Score=795.36  Aligned_cols=436  Identities=19%  Similarity=0.355  Sum_probs=391.5

Q ss_pred             cccccCCccccceEEeeceeeeEecC------------ceeehHHHHHHHHHHhHHHHHHHHHhhc----ccCCChHHHH
Q psy11511         33 QTKVSDWTSSFKIEVPLQYCTSIVGN------------IRVFLVPYFIILFLCGIPILYMELAVGQ----FTRRGPIGVL   96 (631)
Q Consensus        33 ~~~~~~w~s~~~~~~~~~~~~~~~gn------------GgaFlipY~i~l~liGiPll~lElalGQ----~~r~g~i~~~   96 (631)
                      +.+|++|+||++|++++.++++|+||            ||||++||+++++++|+|++++|+++||    ++|+|++++|
T Consensus         2 ~~~R~~W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~   81 (519)
T 2a65_A            2 EVKREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIF   81 (519)
T ss_dssp             ---CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHH
T ss_pred             CcccccCCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHH
Confidence            34689999999999999999999997            7899999999999999999999999999    8999999999


Q ss_pred             hhhccc--cccccchhhHHHHHhhhHHHHHHHHHHHHHHHhcccCCC--CCcCCCCCCCCcccCCCCCCCCCcccccccc
Q psy11511         97 SKLCPF--FKGAGISSVIISFFMSTYYNVLIAYSLYYFSTSFRSQLP--WQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQ  172 (631)
Q Consensus        97 ~~l~p~--~~GiG~~~~l~~~~i~~YY~vi~aW~l~Y~~~sf~~~lP--W~~C~~~wnt~~C~~~~~~~~~~~~~~~~~~  172 (631)
                      +|++|+  |||+|++++++++++++||+|+++|+++|+++|+++++|  |++|+      +|.                 
T Consensus        82 ~~l~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~------~~~-----------------  138 (519)
T 2a65_A           82 YLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNAT------DPD-----------------  138 (519)
T ss_dssp             HHHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--C------CHH-----------------
T ss_pred             HHhcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC------Ccc-----------------
Confidence            999987  999999999999999999999999999999999999999  55432      010                 


Q ss_pred             CCCCCCCCCCchhhhhccccccccccCCCCCccCcCCCCCCCcccccchhHHHHHhhhccccccCccccccceecccccC
Q psy11511        173 NLSKPVPSKTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSG  252 (631)
Q Consensus       173 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~fila~~g~avglgniw~Fp~~vl~~~~~  252 (631)
                            ++.++.++||+                                                       ++++.+++
T Consensus       139 ------~~~~~~~~~f~-------------------------------------------------------~~l~~~~~  157 (519)
T 2a65_A          139 ------SILRPFKEFLY-------------------------------------------------------SYIGVPKG  157 (519)
T ss_dssp             ------HHHHHHHHHHH-------------------------------------------------------HHHTCCSS
T ss_pred             ------cccCcHHHHHH-------------------------------------------------------HHHCCCCC
Confidence                  00123456665                                                       12344556


Q ss_pred             cCccCccchHHHHHHHHHHHHHHHHhhcce-ecccceeeeechhhHHHHHHHHHhhcccCC----hhhhhhheeeccccc
Q psy11511        253 IDQMGDFRWELVACSFVSWILVYFALWKSV-RSSGRVLYFTATIPFLLIFVFLCFSLTLDG----SEIGLRYFFLPNFEL  327 (631)
Q Consensus       253 i~~~g~l~w~lv~~l~~~wilv~~~l~kGi-~~~~Kv~~~~~~~p~vll~il~~r~ltl~g----a~~Gl~~~~~pd~~~  327 (631)
                      +++.|.++|+++.+++++|+++++++.||+ |..+|+.++++++|+++++++++|++||||    |.+|++|+++|||++
T Consensus       158 ~~~~g~~~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~  237 (519)
T 2a65_A          158 DEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEK  237 (519)
T ss_dssp             SSCBCCCCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTS
T ss_pred             cccccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHH
Confidence            788899999999999999999999999999 668999999999999999999999999999    999999999999999


Q ss_pred             cccHHHHHHHHHHHHHHHhhhhhHhhhhccccccCCccccceehhhhhHHHHHHHHHHhhhhccccccccccchhhhhhc
Q psy11511        328 LSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVIL  407 (631)
Q Consensus       328 l~~~~vW~~A~~Q~ffslslg~G~~it~gSy~~~~~ni~~da~~v~~~~~~~sllagl~if~~~g~~~~~~~~~~~~~~~  407 (631)
                      +.++++|.+|++|+|||+|+|+|++++||||+|+|||+.||+++++..|+.+|++||++||+.+                
T Consensus       238 L~~~~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~~n~~~~a~~v~~~n~~~sllaG~~IF~~l----------------  301 (519)
T 2a65_A          238 LKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPA----------------  301 (519)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHH----------------
T ss_pred             hCCHHHHHHHHHHHHHHhHHHHhHHhhhhcccCCCcChHhhHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence            9999999999999999999999999999999999999999999999999999999999999843                


Q ss_pred             ccccccccccccchhhhhhhhhhhccccccccceeeeeeecccccccCcc-ccccccCC-CceEeehHHHHHhcCCCchh
Q psy11511        408 DGFISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETS-IENVILDG-PGLIFVVYPQALAKLPFPNF  485 (631)
Q Consensus       408 ~~~~~s~n~~~~~~~~d~~~~~~~~~~~~~~~~~~~f~~~G~~~~~~~~~-~~~v~~~G-pgL~Fi~lP~~f~~mp~~~~  485 (631)
                                                              |+++  +|.+ ++|+.++| |||+|++||++|++||+|++
T Consensus       302 ----------------------------------------gf~a--~g~~~~~~v~~~G~pgL~Fi~~P~af~~mp~g~~  339 (519)
T 2a65_A          302 ----------------------------------------AVAF--FGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTF  339 (519)
T ss_dssp             ----------------------------------------HHHH--HCHHHHHHHHHHCSSHHHHTHHHHHHTTSTTHHH
T ss_pred             ----------------------------------------HHHh--cCCcchHHHhcCCCCceeHHHHHHHHHhCCCccc
Confidence                                                    3333  3455 55666789 99999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHhhhccCCccccccccchhhhHHHHHHHHHHhcccccccc-cceeehhhHHHhhh
Q psy11511        486 WAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGLPYVTQG-GIYFFQLIDHYTAS  564 (631)
Q Consensus       486 w~~lFFl~l~~agltS~i~l~E~iv~~l~d~f~~~~rr~~~~~~~~~~~~c~~~fl~gl~~~t~~-G~~~~~l~D~~~~~  564 (631)
                      |+++||+|++++|+||+++++|++++.++|+++ +.||+      ++.++|+++|++|+|+++++ |   +|++|+++++
T Consensus       340 ~~~lFF~~l~~agltS~i~~~E~~vt~l~D~~~-~~R~~------~~~~v~~~~fllgl~~~~~~~g---~~~~D~~~~~  409 (519)
T 2a65_A          340 LGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELK-LSRKH------AVLWTAAIVFFSAHLVMFLNKS---LDEMDFWAGT  409 (519)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCHHH------HHHHHHHHHHHHHHHHHHBTTH---HHHHHHHTTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhC-CcHHH------HHHHHHHHHHHHHHHHHcCCCC---cchHHHHHhH
Confidence            999999999999999999999999999999995 33332      68889999999999999998 7   9999999999


Q ss_pred             HHHHHHHHHHhheeeEEeCchhHHHHHhhhcCCCCcceeeeeehhhhHHHHHHHHH
Q psy11511        565 TAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLYFRFCWSIAAPLLILIRIS  620 (631)
Q Consensus       565 ~~l~~~~l~e~i~v~wvyG~~~~~~di~~m~g~~~~~~~~~~w~~v~Pi~l~~~~~  620 (631)
                      +.+++++++|+++++|+||.||+++|++.|.++++..+|++||||++|+++++++.
T Consensus       410 ~~l~~~~l~~~i~v~wv~g~~~~~~~i~~~~~~~~~~~w~~~~~~v~P~~l~~i~~  465 (519)
T 2a65_A          410 IGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLV  465 (519)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhheeeehhHHHHHHHcccCCchHHHHHHeEEehHHHHHHHHHH
Confidence            99999999999999999999999999999999888788999999999998887654

>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...

Probab=98.94  E-value=1.8e-10  Score=127.88  Aligned_cols=118  Identities=19%  Similarity=0.377  Sum_probs=85.0

Q ss_pred             CcccccchhHHHHHhhhccccccCccccccceecccccCcCccCccchHHHHHHHHHHHHHHHHhhcceecccceeeeec
Q psy11511        214 RKRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTA  293 (631)
Q Consensus       214 ~~~~~w~s~~~fila~~g~avglgniw~Fp~~vl~~~~~i~~~g~l~w~lv~~l~~~wilv~~~l~kGi~~~~Kv~~~~~  293 (631)
                      ++||+|+||.+|||||+|+|||+||+|||||.+++++++                 ++++.|+           ++.++.
T Consensus         3 ~~R~~W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGg-----------------AFlipYl-----------i~l~~~   54 (519)
T 2a65_A            3 VKREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG-----------------AFMIPYI-----------IAFLLV   54 (519)
T ss_dssp             --CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTH-----------------HHHHHHH-----------HHHHHT
T ss_pred             cccccCCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCc-----------------HHHHHHH-----------HHHHHH
Confidence            368999999999999999999999999999999999876                 3334444           222334


Q ss_pred             hhhHHHHHHHHHhhc---ccCChhhhhhheeecc--ccccccHHHHHHHHHHHHHHHhhhhhHhhhhccccc
Q psy11511        294 TIPFLLIFVFLCFSL---TLDGSEIGLRYFFLPN--FELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNK  360 (631)
Q Consensus       294 ~~p~vll~il~~r~l---tl~ga~~Gl~~~~~pd--~~~l~~~~vW~~A~~Q~ffslslg~G~~it~gSy~~  360 (631)
                      .+|.+++-..+.|-.   +-.|+....+. ..|+  |+-+.-..+....+..++|+.-+||-....+.|...
T Consensus        55 GiPll~~E~alGq~~~~~~r~~~i~a~~~-l~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~  125 (519)
T 2a65_A           55 GIPLMWIEWAMGRYGGAQGHGTTPAIFYL-LWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVG  125 (519)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCSHHHHHHH-HSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcccchhccCCCHHHHHHH-hcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            689888888888821   22344444432 3454  766655667777788899999899987776666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	631
d2a65a1	509	f.54.1.1 (A:5-513) Na(+):neurotransmitter symporte	2e-27
d2a65a1	509	f.54.1.1 (A:5-513) Na(+):neurotransmitter symporte	3e-17
d2a65a1	509	f.54.1.1 (A:5-513) Na(+):neurotransmitter symporte	9e-07

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Length = 509

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

 Score =  113 bits (284), Expect = 2e-27
 Identities = 56/383 (14%), Positives = 126/383 (32%), Gaps = 70/383 (18%)

Query: 240 WRFPHKVLQISSGIDQMGDFRWE----LVACSFVSWILVYFALWKSVRSSGRVLYFTATI 295
             F +  + +  G + +           +   F++  ++   + K +    ++   T  I
Sbjct: 141 KEFLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFI 200

Query: 296 PFLLIFVFLCFSLTLDG-SEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVIT 354
             + + + +    T +G +  GL + + P+FE L D  VW+ A  QIF            
Sbjct: 201 LAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFF----------- 249

Query: 355 FSSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSY 414
                                    ++ +G    IT                     +SY
Sbjct: 250 -------------------------TLSLGFGAIITY--------------------ASY 264

Query: 415 NKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYP 474
            + +  I++  +  + +N    V++G  I I      +    ++         L F+  P
Sbjct: 265 VRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLP 324

Query: 475 QALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLV 534
              ++     F   L+FF L    L S  A+++ ++  ++D      K  ++    +V  
Sbjct: 325 AIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFF 384

Query: 535 VCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHM 594
              +  F                +D +  +  V++    E++   WI+G+DK    ++  
Sbjct: 385 SAHLVMFLN---------KSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRG 435

Query: 595 TGKFPSLYFRFCWSIAAPLLILI 617
                   + +      P  + +
Sbjct: 436 GIIKVPRIYYYVMRYITPAFLAV 458

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Length = 509

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

 Score = 82.5 bits (203), Expect = 3e-17
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCP------FFKGAGISSVIISF 115
           F++PY I   L GIP++++E A+G++      G    +        F K  G+  + I  
Sbjct: 39  FMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPL 98

Query: 116 FMSTYYNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLS 175
            ++ YY  + +++L +        +P                       +G     + + 
Sbjct: 99  VVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPIL 158

Query: 176 KP 177
           KP
Sbjct: 159 KP 160

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Length = 509

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

 Score = 49.4 bits (117), Expect = 9e-07
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQ 248
           R+HW +++  ILA  G ++G+GN  RFP +  +
Sbjct: 1   REHWATRLGLILAMAGNAVGLGNFLRFPVQAAE 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	631
d2a65a1	509	Na(+):neurotransmitter symporter homologue LeuT {A	100.0
d2a65a1	509	Na(+):neurotransmitter symporter homologue LeuT {A	98.58

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=9.9e-79  Score=678.04  Aligned_cols=438  Identities=19%  Similarity=0.346  Sum_probs=360.9

Q ss_pred             ccCCccccceEEeeceeeeEecC------------ceeehHHHHHHHHHHhHHHHHHHHHhhcccCCChHHHHhhh----
Q psy11511         36 VSDWTSSFKIEVPLQYCTSIVGN------------IRVFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKL----   99 (631)
Q Consensus        36 ~~~w~s~~~~~~~~~~~~~~~gn------------GgaFlipY~i~l~liGiPll~lElalGQ~~r~g~i~~~~~l----   99 (631)
                      |++|+||+++++++.+.++|+||            ||||++||+++++++|+|++++|+++||++|+|++++|+++    
T Consensus         1 R~~W~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i~~~~~i~~~~   80 (509)
T d2a65a1           1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLL   80 (509)
T ss_dssp             CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHH
T ss_pred             CCCCCChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHh
Confidence            78999999999999999999997            77999999999999999999999999999999999999887    


Q ss_pred             --ccccccccchhhHHHHHhhhHHHHHHHHHHHHHHHhcccCCCCCcCCCCCCCCcccCCCCCCCCCccccccccCCCCC
Q psy11511        100 --CPFFKGAGISSVIISFFMSTYYNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKP  177 (631)
Q Consensus       100 --~p~~~GiG~~~~l~~~~i~~YY~vi~aW~l~Y~~~sf~~~lPW~~C~~~wnt~~C~~~~~~~~~~~~~~~~~~~~~~~  177 (631)
                        +|++||+|++++++++++++||+++.+|+++|+++|+++++||+.|++++++. |                       
T Consensus        81 ~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~s~~~~lp~~~~~~~~~~~-~-----------------------  136 (509)
T d2a65a1          81 WRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDS-I-----------------------  136 (509)
T ss_dssp             SCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHH-H-----------------------
T ss_pred             ccCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCcccccCccc-c-----------------------
Confidence              56789999999999999999999999999999999999999999997754321 1                       


Q ss_pred             CCCCCchhhhhccccccccccCCCCCccCcCCCCCCCcccccchhHHHHHhhhccccccCccccccceecccccCcCccC
Q psy11511        178 VPSKTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSGIDQMG  257 (631)
Q Consensus       178 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~fila~~g~avglgniw~Fp~~vl~~~~~i~~~g  257 (631)
                         .++.++|++..+..                                                    .+..+++.+..
T Consensus       137 ---~~~~~~~~~~~~~~----------------------------------------------------~~~~~~~~~~~  161 (509)
T d2a65a1         137 ---LRPFKEFLYSYIGV----------------------------------------------------PKGDEPILKPS  161 (509)
T ss_dssp             ---HHHHHHHHHHHHTC----------------------------------------------------CSSSSCBCCCC
T ss_pred             ---ccchHHHHHhhhcc----------------------------------------------------ccCCCccccch
Confidence               11234454410000                                                    00000011111


Q ss_pred             c-cchHHHHHHHHHHHHHHHHhhcceecccceeeeechhhHHHHHHHHHhhcccC----ChhhhhhheeeccccccccHH
Q psy11511        258 D-FRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFLCFSLTLD----GSEIGLRYFFLPNFELLSDHK  332 (631)
Q Consensus       258 ~-l~w~lv~~l~~~wilv~~~l~kGi~~~~Kv~~~~~~~p~vll~il~~r~ltl~----ga~~Gl~~~~~pd~~~l~~~~  332 (631)
                      . ....+++++.++|.+++.++.||+|+.+|+++.+.   ++++++++++.++++    |+.+|++|+++|||+++.+++
T Consensus       162 ~~~~~~~~~~~~i~~~i~~~gi~kGi~~~~kv~~~~l---~~~~~~l~i~~~~l~~~~gga~~gl~~~~~pd~~~L~~~~  238 (509)
T d2a65a1         162 LFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTL---FILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPG  238 (509)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHH---HHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHH---HHHHHHHHHHhhhcccCCCcHHHHhhhccCCCHHHhcChH
Confidence            1 12235567888899999999999999999976333   334445556666665    799999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhHhhhhccccccCCccccceehhhhhHHHHHHHHHHhhhhccccccccccchhhhhhcccccc
Q psy11511        333 VWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFIS  412 (631)
Q Consensus       333 vW~~A~~Q~ffslslg~G~~it~gSy~~~~~ni~~da~~v~~~~~~~sllagl~if~~~g~~~~~~~~~~~~~~~~~~~~  412 (631)
                      +|.+|++|+|||+|+|+|++++||||||+|+|+.||++.++..|+.+|+++|.+++...+..                  
T Consensus       239 vW~~A~~Q~ffSlgiG~G~~i~~~Sy~~~~~n~~rda~~v~~~~~~~si~~~~~~~~~~~~~------------------  300 (509)
T d2a65a1         239 VWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVA------------------  300 (509)
T ss_dssp             HHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH------------------
T ss_pred             HHHHHHHHHhhhhcccCCceeeehhhccchhhhcccceEEEecccceeeccccchhhhhhee------------------
Confidence            99999999999999999999999999999999999999999999999999987766632211                  


Q ss_pred             cccccccchhhhhhhhhhhccccccccceeeeeeecccccccCccccccccCCCceEeehHHHHHhcCCCchhHHHHHHH
Q psy11511        413 SYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPNFWAVLFFF  492 (631)
Q Consensus       413 s~n~~~~~~~~d~~~~~~~~~~~~~~~~~~~f~~~G~~~~~~~~~~~~v~~~GpgL~Fi~lP~~f~~mp~~~~w~~lFFl  492 (631)
                                                            ......+.+....+||+|.|+++|+++++||++++|+++||+
T Consensus       301 --------------------------------------~~~~~~~~~~~~~~g~~L~Fv~~P~~fs~~~~~~~~~~lFF~  342 (509)
T d2a65a1         301 --------------------------------------FFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFF  342 (509)
T ss_dssp             --------------------------------------HHCHHHHHHHHHHCSSHHHHTHHHHHHTTSTTHHHHHHHHHH
T ss_pred             --------------------------------------eeccccccccccccCCCchhhhhHHHhhcCCcchhHHHHHHH
Confidence                                                  011111122334689999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhhHHHHHHhhhccCCccccccccchhhhHHHHHHHHHHhcccccccccceeehhhHHHhhhHHHHHHHH
Q psy11511        493 SLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAF  572 (631)
Q Consensus       493 ~l~~agltS~i~l~E~iv~~l~d~f~~~~rr~~~~~~~~~~~~c~~~fl~gl~~~t~~G~~~~~l~D~~~~~~~l~~~~l  572 (631)
                      |++++|++|+++++|++++.++|++++ .||+     ..+...|++.++.++++.++.|   ++++|++++++.++++++
T Consensus       343 ~l~~~gl~s~i~~~e~~v~~l~d~~~~-~r~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~D~~~~~~~l~~~~l  413 (509)
T d2a65a1         343 LLFFAGLTSSIAIMQPMIAFLEDELKL-SRKH-----AVLWTAAIVFFSAHLVMFLNKS---LDEMDFWAGTIGVVFFGL  413 (509)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSCC-CHHH-----HHHHHHHHHHHHHHHHHHBTTH---HHHHHHHTTTHHHHHHHH
T ss_pred             HHHHHHHHHHhccccchhHHHHHhcCC-chhh-----hhhheeEEEEhhhhHHHHhcch---HHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999963 3433     2456677788888889888877   678999999999999999


Q ss_pred             HHhheeeEEeCchhHHHHHhhhcCCCCcceeeeeehhhhHHHHHHHHH
Q psy11511        573 FEVVAVAWIYGSDKLARNVHHMTGKFPSLYFRFCWSIAAPLLILIRIS  620 (631)
Q Consensus       573 ~e~i~v~wvyG~~~~~~di~~m~g~~~~~~~~~~w~~v~Pi~l~~~~~  620 (631)
                      +|+++++|+||.||+++|++.|.|++++.+|+++|||++|+++++++.
T Consensus       414 ~e~i~v~w~yg~~r~~~di~~~~~~~~~~~~~~~~~~i~Pi~l~~ili  461 (509)
T d2a65a1         414 TELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLV  461 (509)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHheeeeEecHHHHHHHHHhCCCCCHHHHHHHheeeeeHhhhhheee
Confidence            999999999999999999999999988888999999999998877643

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.58  E-value=4.5e-09  Score=114.45  Aligned_cols=114  Identities=20%  Similarity=0.432  Sum_probs=72.1

Q ss_pred             ccccchhHHHHHhhhccccccCccccccceecccccCcCccCccchHHHHHHHHHHHHHHHHhhcceecccceeeeechh
Q psy11511        216 RDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATI  295 (631)
Q Consensus       216 ~~~w~s~~~fila~~g~avglgniw~Fp~~vl~~~~~i~~~g~l~w~lv~~l~~~wilv~~~l~kGi~~~~Kv~~~~~~~  295 (631)
                      ||+|+||.+|++||+|+|||+||+|||||.+++++++                 +.++.|+           ++.+...+
T Consensus         1 R~~W~s~~~fila~~g~avGlGNiWrFPyl~~~nGGg-----------------aFlipY~-----------~~l~l~gv   52 (509)
T d2a65a1           1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG-----------------AFMIPYI-----------IAFLLVGI   52 (509)
T ss_dssp             CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTH-----------------HHHHHHH-----------HHHHHTHH
T ss_pred             CCCCCChHHHHHHHHHHHhcccHHHhhhHHHHhcCCc-----------------hhHHHHH-----------HHHHHHHH
Confidence            7899999999999999999999999999999998875                 2223332           12223357


Q ss_pred             hHHHHHHHHHhhccc--CChhhhhhhee--eccccccccHHHHHHHHHHHHHHHhhhhhHhhhhcc
Q psy11511        296 PFLLIFVFLCFSLTL--DGSEIGLRYFF--LPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSS  357 (631)
Q Consensus       296 p~vll~il~~r~ltl--~ga~~Gl~~~~--~pd~~~l~~~~vW~~A~~Q~ffslslg~G~~it~gS  357 (631)
                      |.+.+-..+.|-..-  .++...+....  .|.++-+.-..+.......++|+.-+++.....+.|
T Consensus        53 Pll~lE~~lGq~~~~g~i~~~~~i~~~~~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~s  118 (509)
T d2a65a1          53 PLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF  118 (509)
T ss_dssp             HHHHHHHHHHHHHHTTTCCSHHHHHHHHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcccHHHHHHHHhccCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877777777653211  11222111111  233444444456667777777777777765444433