Psyllid ID: psy11524

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320---
Protein Sequence
MNVSPQRVKMGKSRYGLGMDYLELLSYPEVLRFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQR
Secondary Structure (PSIPRED)
cccccHHHccccccccccccHHHHcccccEEEEcccEEEEEEccccEEEEEEcccccEEEEEcccccEEccccEEEEccccccEEEEEEcccccEEEEEEcccEEEEEccccccEEEEccccccEEEEEEcccccEEEEEcccccccccEEEccccccEEEcccccccEEEEEEcccccEEEEEEcccEEEEccccccEEEEccccccEEEEEEcccccEEEEEccccEEEEEccccccccccccccccccEEEEEEccccccccccEEEEEEEcccEEEEEEccccccccccEEEEEEcccccEEEEEEccccEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHccccccHHHHHHcHHHHHHHHcccEEccccccEEEEEEcccccEEEEEcccccccccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEcccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEccccEEEEEEcccccEEEEEccccccccEEEEEEcccccEEEEEcccccccccccEEEEEcEHcccccccEEEEEEcccccEEEEEccccEEEEEEEEcc
Coil and Loop (DISEMBL)
mnvspqrvkmgksryglgmdyLELLSYPEVLRFVKNHLtirrydgtvinypisPYISVLHSYaashswpqALSLCrtlnvsppvysaawspdsnkVLLTQAKSlvikplspnnkatkwqahdgLILKVAWCSSTDlilsggedckykasfvwdtdgrqlysslthdhpisslawapggdmfavgsyntlrlcdkvgwshsldkpdtgsvydlvwsndatQIAGACANVIHIfdissssssnvtaplshsheiTQLAVNQTGSLQERHVAFIDKNRDLYLSMWshsldkpdtgsvydlvwssdaTQIAGACANGSLLLGTIIQR
Flexible Loop (DISEMBL)
mnvspqrvkmgksryglGMDYLELLSYPEVLRFVKNHltirrydgtviNYPISPYISVLHSYAASHSWPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQR
Low Complexity Region (SEG)
MNVSPQRVKMGKSRYGLGMDYLELLSYPEVLRFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDIssssssNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQR
Disordered region (IsUnstruct)
*************RYGLGMDYLELLSYPEVLRFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDI******************TQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII**
Disordered Region (DISOPRED)
******************MDYLELLSYPEVLRFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQR
Disordered Region (DISEMBL)
*********MGKSRYGLGMDYLELLSYPEVLRFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISS***********HSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQR
Disordered Region (DISPRO)
***********K***GLGMDYLELLSYPEVLRFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNVSPQRVKMGKSRYGLGMDYLELLSYPEVLRFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	323	2.2.26 [Sep-21-2011]
Q9P2H3	777	Intraflagellar transport	no	N/A	0.439	0.182	0.655	3e-54
Q66HB3	777	Intraflagellar transport	yes	N/A	0.439	0.182	0.655	5e-54
Q8K057	777	Intraflagellar transport	yes	N/A	0.439	0.182	0.655	5e-54
P49695	742	Probable serine/threonine	no	N/A	0.650	0.283	0.242	0.0001
P20053	465	U4/U6 small nuclear ribon	yes	N/A	0.625	0.434	0.230	0.0002
Q8BQM8	1977	Echinoderm microtubule-as	no	N/A	0.588	0.096	0.238	0.0002
Q6ED65	1977	Echinoderm microtubule-as	no	N/A	0.588	0.096	0.238	0.0002

>sp|Q9P2H3|IFT80_HUMAN Intraflagellar transport protein 80 homolog OS=Homo sapiens GN=IFT80 PE=1 SV=3

 Score =  212 bits (539), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 95/145 (65%), Positives = 116/145 (80%), Gaps = 3/145 (2%)

Query: 83  PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGE 142
           PVYS AW PDS KVL T  K L+IKPL PN K  +W+AHDG+ILKV W S  DLILS GE
Sbjct: 149 PVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGE 208

Query: 143 DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLD 202
           DCKYK   VWD+ GR LY+S  H+HPI+S+AWAP G++FAVGS++TLRLCDK GWS++L+
Sbjct: 209 DCKYK---VWDSYGRPLYNSQPHEHPITSVAWAPDGELFAVGSFHTLRLCDKTGWSYALE 265

Query: 203 KPDTGSVYDLVWSNDATQIAGACAN 227
           KP+TGS++++ WS D TQIAGAC N
Sbjct: 266 KPNTGSIFNIAWSIDGTQIAGACGN 290

Component of the intraflagellar transport (IFT) complex B, which is essential for the development and maintenance of motile and sensory cilia.
Homo sapiens (taxid: 9606)

>sp|Q66HB3|IFT80_RAT Intraflagellar transport protein 80 homolog OS=Rattus norvegicus GN=Ift80 PE=2 SV=1

 Score =  211 bits (538), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 95/145 (65%), Positives = 115/145 (79%), Gaps = 3/145 (2%)

Query: 83  PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGE 142
           PVYS AW PDS KVL T  K L+IKPL PN K  +W+AHDG+ILKV W S  DLILS GE
Sbjct: 149 PVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGE 208

Query: 143 DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLD 202
           DCKYK   VWD+ GR LY S  H+HPI+S+AWAP G++FAVGS++TLRLCDK GWS++L+
Sbjct: 209 DCKYK---VWDSYGRVLYGSQPHEHPITSVAWAPDGELFAVGSFHTLRLCDKTGWSYALE 265

Query: 203 KPDTGSVYDLVWSNDATQIAGACAN 227
           KP+TGS++++ WS D TQIAGAC N
Sbjct: 266 KPNTGSIFNIAWSIDGTQIAGACGN 290

Component of the intraflagellar transport (IFT) complex B, which is essential for the development and maintenance of motile and sensory cilia.

Rattus norvegicus (taxid: 10116)

>sp|Q8K057|IFT80_MOUSE Intraflagellar transport protein 80 homolog OS=Mus musculus GN=Ift80 PE=2 SV=1

 Score =  211 bits (537), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 95/145 (65%), Positives = 115/145 (79%), Gaps = 3/145 (2%)

Query: 83  PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGE 142
           PVYS AW PDS KVL T  K L+IKPL PN K  +W+AHDG+ILKV W S  DLILS GE
Sbjct: 149 PVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGE 208

Query: 143 DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLD 202
           DCKYK   VWD+ GR LY S  H+HPI+S+AWAP G++FAVGS++TLRLCDK GWS++L+
Sbjct: 209 DCKYK---VWDSYGRVLYGSQPHEHPITSVAWAPDGELFAVGSFHTLRLCDKTGWSYALE 265

Query: 203 KPDTGSVYDLVWSNDATQIAGACAN 227
           KP+TGS++++ WS D TQIAGAC N
Sbjct: 266 KPNTGSIFNIAWSIDGTQIAGACGN 290

Component of the intraflagellar transport (IFT) complex B, which is essential for the development and maintenance of motile and sensory cilia.

Mus musculus (taxid: 10090)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 13/223 (5%)

Query: 46  TVINYPISPYISVLHSYAASHSWPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLV 105
           T+   P+ P  S   S +A    P  L+  R L       + A+SP  + +       L+
Sbjct: 427 TLPETPLRPDSSTAPSESAD---PHELNEPRILTTDREAVAVAFSPGGSLLAGGSGDKLI 483

Query: 106 -IKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLT 164
            +  ++  ++    + H   +  VA+     L+ SG +D   +   V   + R ++    
Sbjct: 484 HVWDVASGDELHTLEGHTDWVRAVAFSPDGALLASGSDDATVRLWDVAAAEERAVFEG-- 541

Query: 165 HDHPISSLAWAPGGDMFAVGSYN-TLRLCD-KVGWSHSLDKPDTGSVYDLVWSNDATQIA 222
           H H +  +A++P G M A GS + T RL +   G  H++ K  T  VY + +S D + +A
Sbjct: 542 HTHYVLDIAFSPDGSMVASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVAFSPDGSMVA 601

Query: 223 -GACANVIHIFDISSSSSSNV-TAPLSHSHEITQLAVNQTGSL 263
            G+    I ++D+++    +V  AP   +  +  LA +  GS+
Sbjct: 602 SGSRDGTIRLWDVATGKERDVLQAP---AENVVSLAFSPDGSM 641

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P20053|PRP4_YEAST U4/U6 small nuclear ribonucleoprotein PRP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP4 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 32/234 (13%)

Query: 51  PISPY-ISVLHSYAASHSWPQALSLCRTLNVSP----------PVYSAAWSPDSNKVLLT 99
           PIS   +S      A+ SW   L +  +  + P           + +  W PDSN  +++
Sbjct: 177 PISAVSLSTDDMVVATGSWAGDLQVLNSQTLQPLTQKLDSHVGKIGAIDWHPDSNNQMIS 236

Query: 100 QAKSLVIKPLSPNNKATKWQ------AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWD 153
            A+  +IK    +N+    +       H+  I  V +  S   I S   D  ++   +WD
Sbjct: 237 CAEDGLIKNFQYSNEEGGLRLLGDLVGHERRISDVKYHPSGKFIGSASHDMTWR---LWD 293

Query: 154 TDGRQ-LYSSLTHDHPISSLAWAPGGDMFAVGSYNTL------RLCDKVGWSHSLDKPDT 206
               Q L     HD  + SL++   G +   G  ++L      R   KV       KP  
Sbjct: 294 ASTHQELLLQEGHDKGVFSLSFQCDGSLVCSGGMDSLSMLWDIRSGSKVMTLAGHSKP-- 351

Query: 207 GSVYDLVWSNDATQIA-GACANVIHIFDISSSSSSNVTAPLSHSHEITQLAVNQ 259
             +Y + WS +  Q+A G    +I+++DI       +   L+H + +TQ+  ++
Sbjct: 352 --IYTVAWSPNGYQVATGGGDGIINVWDIRKRDEGQLNQILAHRNIVTQVRFSK 403

Involved in RNA splicing. Is required for the association of U4/U6 snRNP with U5 snRNP in an early step of spliceosome assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8BQM8|EMAL5_MOUSE Echinoderm microtubule-associated protein-like 5 OS=Mus musculus GN=Eml5 PE=2 SV=2

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 91/214 (42%), Gaps = 24/214 (11%)

Query: 68   WPQALSLCR-----TLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAH- 121
            W Q L  CR     T  V+  V S        K+L+    S +I+ +   N A     + 
Sbjct: 1643 WDQELRRCRAFRLETGQVTDCVRSVCRG--KGKILVGTRNSEIIE-VGEKNAACNILVNG 1699

Query: 122  --DGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGD 179
              DG I  +A   S D  LS  ED   +   +WD   +++ + +   H   ++ ++P GD
Sbjct: 1700 HVDGPIWGLATHPSRDFFLSAAEDGTVR---LWDIADKKMLNKVNLGHAARTVCYSPEGD 1756

Query: 180  MFAVGSYN----TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIA-GACANVIHIFDI 234
            M A+G  N     L +     W    D+    +++D+ +S D+  +A G+  N +  +D+
Sbjct: 1757 MVAIGMKNGEFIILLVSSLKIWGKKRDR--RCAIHDIRFSPDSRYLAVGSSENSVDFYDL 1814

Query: 235  SSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHV 268
            +   + N    +S+  +I    +    S   RH+
Sbjct: 1815 TLGPTLN---RISYCKDIPSFVIQMDFSADSRHL 1845

May modify the assembly dynamics of microtubules, such that microtubules are slightly longer, but more dynamic.

Mus musculus (taxid: 10090)

>sp|Q6ED65|EMAL5_RAT Echinoderm microtubule-associated protein-like 5 OS=Rattus norvegicus GN=Eml5 PE=1 SV=2

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 91/214 (42%), Gaps = 24/214 (11%)

Query: 68   WPQALSLCR-----TLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAH- 121
            W Q L  CR     T  V+  V S        K+L+    S +I+ +   N A     + 
Sbjct: 1643 WDQELRRCRAFRLETGQVTDCVRSVCRG--KGKILVGTRNSEIIE-VGEKNAACNILVNG 1699

Query: 122  --DGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGD 179
              DG I  +A   S D  LS  ED   +   +WD   +++ + +   H   ++ ++P GD
Sbjct: 1700 HVDGPIWGLATHPSRDFFLSAAEDGTVR---LWDIADKKMLNKVNLGHAARTVCYSPEGD 1756

Query: 180  MFAVGSYN----TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIA-GACANVIHIFDI 234
            M A+G  N     L +     W    D+    +++D+ +S D+  +A G+  N +  +D+
Sbjct: 1757 MVAIGMKNGEFIILLVSSLKIWGKKRDR--RCAIHDIRFSPDSRYLAVGSSENSVDFYDL 1814

Query: 235  SSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHV 268
            +   + N    +S+  +I    +    S   RH+
Sbjct: 1815 TLGPTLN---RISYCKDIPSFVIQMDFSADSRHL 1845

May modify the assembly dynamics of microtubules, such that microtubules are slightly longer, but more dynamic.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
242008267	745	predicted protein [Pediculus humanus cor	0.455	0.197	0.64	1e-53
149731034	777	PREDICTED: intraflagellar transport prot	0.439	0.182	0.668	1e-53
345796642	777	PREDICTED: intraflagellar transport prot	0.439	0.182	0.662	4e-53
291400088	777	PREDICTED: WD repeat domain 56 [Oryctola	0.439	0.182	0.662	7e-53
126338436	777	PREDICTED: intraflagellar transport prot	0.455	0.189	0.646	7e-53
328909593	287	intraflagellar transport protein 80i-lik	0.455	0.512	0.653	7e-53
348581738	722	PREDICTED: intraflagellar transport prot	0.439	0.196	0.662	7e-53
395528244	776	PREDICTED: intraflagellar transport prot	0.455	0.189	0.646	8e-53
149642775	777	intraflagellar transport protein 80 homo	0.439	0.182	0.662	8e-53
403265645	777	PREDICTED: intraflagellar transport prot	0.439	0.182	0.655	9e-53

>gi|242008267|ref|XP_002424928.1| predicted protein [Pediculus humanus corporis] gi|212508542|gb|EEB12190.1| predicted protein [Pediculus humanus corporis]

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 96/150 (64%), Positives = 126/150 (84%), Gaps = 3/150 (2%)

Query: 83  PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGE 142
           P+Y+AAW PDSN+VLL Q + LVIKPL+PN +  +W+AH+GLILKVAW  S +LI+SGGE
Sbjct: 138 PLYTAAWGPDSNQVLLAQGRMLVIKPLAPNTRPLRWKAHEGLILKVAWNQSNNLIVSGGE 197

Query: 143 DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLD 202
           DCKYK   VWD+ GRQLYS+   ++P++SL+W+PGG++FAVGS+NTL+LCDK+GWSHSLD
Sbjct: 198 DCKYK---VWDSFGRQLYSNALCEYPVTSLSWSPGGEVFAVGSFNTLKLCDKIGWSHSLD 254

Query: 203 KPDTGSVYDLVWSNDATQIAGACANVIHIF 232
           KP++G++Y L WS D TQ+AGAC+N   IF
Sbjct: 255 KPNSGNIYALSWSPDGTQLAGACSNGNIIF 284

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149731034|ref|XP_001489193.1| PREDICTED: intraflagellar transport protein 80 homolog [Equus caballus]

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 97/145 (66%), Positives = 116/145 (80%), Gaps = 3/145 (2%)

Query: 83  PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGE 142
           PVYS AW PDS KVL T  K L+IKPL PN K  +W+AHDG+ILKV W S  DLILS GE
Sbjct: 149 PVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGE 208

Query: 143 DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLD 202
           DCKYK   VWD+DGR LYSS  H+HPI+S+AWAP G++FAVGS++TLRLCDK GWS++L+
Sbjct: 209 DCKYK---VWDSDGRPLYSSQPHEHPITSVAWAPDGELFAVGSFHTLRLCDKTGWSYALE 265

Query: 203 KPDTGSVYDLVWSNDATQIAGACAN 227
           KP TGS++++ WS D TQIAGAC N
Sbjct: 266 KPSTGSIFNIAWSVDGTQIAGACGN 290

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345796642|ref|XP_545256.3| PREDICTED: intraflagellar transport protein 80 homolog [Canis lupus familiaris]

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 96/145 (66%), Positives = 117/145 (80%), Gaps = 3/145 (2%)

Query: 83  PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGE 142
           PVYS AW PDS KVL T  K L+IKPL PN K  +W+AHDG+ILKV W S  DLILS GE
Sbjct: 149 PVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGE 208

Query: 143 DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLD 202
           DCKYK   VWD+ GR LY+SL H+HPI+S+AWAP G++FAVGS++TLRLCDK GWS++L+
Sbjct: 209 DCKYK---VWDSYGRPLYNSLPHEHPITSVAWAPDGELFAVGSFHTLRLCDKTGWSYALE 265

Query: 203 KPDTGSVYDLVWSNDATQIAGACAN 227
           KP+TGS++++ WS D TQIAGAC N
Sbjct: 266 KPNTGSIFNIAWSIDGTQIAGACGN 290

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291400088|ref|XP_002716383.1| PREDICTED: WD repeat domain 56 [Oryctolagus cuniculus]

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 96/145 (66%), Positives = 116/145 (80%), Gaps = 3/145 (2%)

Query: 83  PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGE 142
           PVYS AW PDS KVL T  K L+IKPL PN K  +W+AHDG+ILKV W S  DLILS GE
Sbjct: 149 PVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGE 208

Query: 143 DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLD 202
           DCKYK   VWD+ GR LY+S  H+HPI+S+AWAP GD+FAVGS++TLRLCDK GWS++L+
Sbjct: 209 DCKYK---VWDSYGRLLYNSQPHEHPITSVAWAPDGDLFAVGSFHTLRLCDKTGWSYALE 265

Query: 203 KPDTGSVYDLVWSNDATQIAGACAN 227
           KP+TGS++++ WS D TQIAGAC N
Sbjct: 266 KPNTGSIFNIAWSVDGTQIAGACGN 290

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|126338436|ref|XP_001370716.1| PREDICTED: intraflagellar transport protein 80 homolog [Monodelphis domestica]

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 97/150 (64%), Positives = 118/150 (78%), Gaps = 3/150 (2%)

Query: 83  PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGE 142
           PVYS AW PDS KVL T  K L+IKPL PN K  +W+AHDG+ILKV W S  DLILS GE
Sbjct: 149 PVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKILQWKAHDGIILKVDWNSVNDLILSAGE 208

Query: 143 DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLD 202
           DCKYK   VWD+ GR LYSS  H+HPI+S+AWAP G++FAVGS++TLRLCDK GWS++L+
Sbjct: 209 DCKYK---VWDSYGRLLYSSQPHEHPITSVAWAPDGELFAVGSFHTLRLCDKTGWSYALE 265

Query: 203 KPDTGSVYDLVWSNDATQIAGACANVIHIF 232
           KP+TGS++++ WS D TQIAGAC N   +F
Sbjct: 266 KPNTGSIFNIAWSIDGTQIAGACGNGQVVF 295

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|328909593|gb|AEB61464.1| intraflagellar transport protein 80i-like protein, partial [Equus caballus]

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 98/150 (65%), Positives = 118/150 (78%), Gaps = 3/150 (2%)

Query: 83  PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGE 142
           PVYS AW PDS KVL T  K L+IKPL PN K  +W+AHDG+ILKV W S  DLILS GE
Sbjct: 65  PVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGE 124

Query: 143 DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLD 202
           DCKYK   VWD+DGR LYSS  H+HPI+S+AWAP G++FAVGS++TLRLCDK GWS++L+
Sbjct: 125 DCKYK---VWDSDGRPLYSSQPHEHPITSVAWAPDGELFAVGSFHTLRLCDKTGWSYALE 181

Query: 203 KPDTGSVYDLVWSNDATQIAGACANVIHIF 232
           KP TGS++++ WS D TQIAGAC N   +F
Sbjct: 182 KPSTGSIFNIAWSIDGTQIAGACGNGHVVF 211

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348581738|ref|XP_003476634.1| PREDICTED: intraflagellar transport protein 80 homolog [Cavia porcellus]

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 96/145 (66%), Positives = 116/145 (80%), Gaps = 3/145 (2%)

Query: 83  PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGE 142
           PVYS AW PDS KVL T  K L+IKPL PN K  +W+AHDG+ILKV W S  DLILS GE
Sbjct: 149 PVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGE 208

Query: 143 DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLD 202
           DCKYK   VWD+ GR LYSS  H+HPI+S+AWAP G++FAVGS++TLRLCDK GWS++L+
Sbjct: 209 DCKYK---VWDSYGRPLYSSQPHEHPITSVAWAPDGELFAVGSFHTLRLCDKTGWSYALE 265

Query: 203 KPDTGSVYDLVWSNDATQIAGACAN 227
           KP+TGS++++ WS D TQIAGAC N
Sbjct: 266 KPNTGSIFNIAWSVDGTQIAGACGN 290

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395528244|ref|XP_003766240.1| PREDICTED: intraflagellar transport protein 80 homolog [Sarcophilus harrisii]

 Score =  213 bits (543), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 97/150 (64%), Positives = 118/150 (78%), Gaps = 3/150 (2%)

Query: 83  PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGE 142
           PVYS AW PDS KVL T  K L+IKPL PN K  +W+AHDG+ILKV W S  DLILS GE
Sbjct: 149 PVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKILQWKAHDGIILKVDWNSVNDLILSAGE 208

Query: 143 DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLD 202
           DCKYK   VWD+ GR LYSS  H+HPI+S+AWAP G++FAVGS++TLRLCDK GWS++L+
Sbjct: 209 DCKYK---VWDSYGRLLYSSQPHEHPITSVAWAPDGELFAVGSFHTLRLCDKTGWSYALE 265

Query: 203 KPDTGSVYDLVWSNDATQIAGACANVIHIF 232
           KP+TGS++++ WS D TQIAGAC N   +F
Sbjct: 266 KPNTGSIFNIAWSIDGTQIAGACGNGQVVF 295

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149642775|ref|NP_001092429.1| intraflagellar transport protein 80 homolog [Bos taurus] gi|148744058|gb|AAI42311.1| IFT80 protein [Bos taurus]

 Score =  213 bits (543), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 96/145 (66%), Positives = 116/145 (80%), Gaps = 3/145 (2%)

Query: 83  PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGE 142
           PVYS AW PDS KVL T  K L+IKPL PN K  +W+AHDG+ILKV W S  DLILS GE
Sbjct: 149 PVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKILQWKAHDGIILKVDWNSVNDLILSAGE 208

Query: 143 DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLD 202
           DCKYK   VWD+ GR LYSS  H+HPI+S+AWAP G++FAVGS++TLRLCDK GWS++L+
Sbjct: 209 DCKYK---VWDSYGRPLYSSQPHEHPITSVAWAPDGELFAVGSFHTLRLCDKTGWSYALE 265

Query: 203 KPDTGSVYDLVWSNDATQIAGACAN 227
           KP+TGS++++ WS D TQIAGAC N
Sbjct: 266 KPNTGSIFNIAWSVDGTQIAGACGN 290

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403265645|ref|XP_003925033.1| PREDICTED: intraflagellar transport protein 80 homolog [Saimiri boliviensis boliviensis]

 Score =  213 bits (542), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 95/145 (65%), Positives = 116/145 (80%), Gaps = 3/145 (2%)

Query: 83  PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGE 142
           PVYS AW PDS KVL T  K L+IKPL PN K  +W+AHDG+ILKV W S  DLILS GE
Sbjct: 149 PVYSVAWGPDSEKVLFTAGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGE 208

Query: 143 DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLD 202
           DCKYK   VWD+ GR LY+S  H+HPI+S+AWAP G++FAVGS++TLRLCDK GWS++L+
Sbjct: 209 DCKYK---VWDSYGRLLYNSQPHEHPITSVAWAPDGELFAVGSFHTLRLCDKTGWSYALE 265

Query: 203 KPDTGSVYDLVWSNDATQIAGACAN 227
           KP+TGS++++ WS D TQIAGAC N
Sbjct: 266 KPNTGSIFNIAWSIDGTQIAGACGN 290

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
UNIPROTKB|F1PNI0	784	IFT80 "Uncharacterized protein	0.486	0.200	0.621	2.4e-63
ZFIN|ZDB-GENE-041212-50	777	ift80 "intraflagellar transpor	0.486	0.202	0.602	1.3e-62
UNIPROTKB|Q9P2H3	777	IFT80 "Intraflagellar transpor	0.486	0.202	0.614	2.5e-61
UNIPROTKB|E1BT30	780	IFT80 "Uncharacterized protein	0.501	0.207	0.578	1.1e-59
UNIPROTKB|H3BRJ5	948	H3BRJ5 "Uncharacterized protei	0.439	0.149	0.655	1.4e-59
MGI|MGI:1915509	777	Ift80 "intraflagellar transpor	0.486	0.202	0.614	6.8e-54
RGD|1312006	777	Ift80 "intraflagellar transpor	0.486	0.202	0.614	1.2e-53
WB|WBGene00000484	760	che-2 [Caenorhabditis elegans	0.455	0.193	0.493	1.8e-41
FB|FBgn0032891	775	Oseg5 "Oseg5" [Drosophila mela	0.405	0.169	0.401	1.4e-34
UNIPROTKB|F1N0G0	764	F1N0G0 "Uncharacterized protei	0.482	0.204	0.335	1.9e-30

UNIPROTKB|F1PNI0 IFT80 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 548 (198.0 bits), Expect = 2.4e-63, Sum P(2) = 2.4e-63
 Identities = 100/161 (62%), Positives = 122/161 (75%)

Query:    68 WPQALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLIL 126
             W +   L  TL     PVYS AW PDS KVL T  K L+IKPL PN K  +W+AHDG+IL
Sbjct:   140 WSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIIL 199

Query:   127 KVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY 186
             KV W S  DLILS GEDCKYK   VWD+ GR LY+SL H+HPI+S+AWAP G++FAVGS+
Sbjct:   200 KVDWNSVNDLILSAGEDCKYK---VWDSYGRPLYNSLPHEHPITSVAWAPDGELFAVGSF 256

Query:   187 NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN 227
             +TLRLCDK GWS++L+KP+TGS++++ WS D TQIAGAC N
Sbjct:   257 HTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGN 297

GO:0060349 "bone morphogenesis" evidence=IEA

GO:0060271 "cilium morphogenesis" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

ZFIN|ZDB-GENE-041212-50 ift80 "intraflagellar transport 80 homolog (Chlamydomonas)" [Danio rerio (taxid:7955)]

 Score = 535 (193.4 bits), Expect = 1.3e-62, Sum P(2) = 1.3e-62
 Identities = 97/161 (60%), Positives = 122/161 (75%)

Query:    68 WPQALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLIL 126
             W ++  L  TL     PVYS AW+PDS +VL T  + LV+KPL PN+K  +W+AHDG+IL
Sbjct:   133 WSKSGMLRSTLAQQGTPVYSVAWAPDSGRVLYTSGRQLVVKPLQPNSKVLQWKAHDGVIL 192

Query:   127 KVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY 186
             KV W +  DLILSGGEDCKYK   VWD+ GR L+SS  HD+PI+S+AWAP G++FA+GS+
Sbjct:   193 KVDWSAVNDLILSGGEDCKYK---VWDSYGRLLFSSAPHDYPITSVAWAPDGELFAMGSF 249

Query:   187 NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN 227
             +TLRLCDK GWS+SL+KP TGS+  L WS D TQ+AGAC N
Sbjct:   250 HTLRLCDKTGWSYSLEKPSTGSLLSLCWSADGTQLAGACGN 290

GO:0003674 "molecular_function" evidence=ND

GO:0060026 "convergent extension" evidence=IMP

GO:0008104 "protein localization" evidence=IMP

GO:0060042 "retina morphogenesis in camera-type eye" evidence=IMP

GO:0060271 "cilium morphogenesis" evidence=IMP

UNIPROTKB|Q9P2H3 IFT80 "Intraflagellar transport protein 80 homolog" [Homo sapiens (taxid:9606)]

 Score = 542 (195.9 bits), Expect = 2.5e-61, Sum P(2) = 2.5e-61
 Identities = 99/161 (61%), Positives = 121/161 (75%)

Query:    68 WPQALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLIL 126
             W +   L  TL     PVYS AW PDS KVL T  K L+IKPL PN K  +W+AHDG+IL
Sbjct:   133 WSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIIL 192

Query:   127 KVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY 186
             KV W S  DLILS GEDCKYK   VWD+ GR LY+S  H+HPI+S+AWAP G++FAVGS+
Sbjct:   193 KVDWNSVNDLILSAGEDCKYK---VWDSYGRPLYNSQPHEHPITSVAWAPDGELFAVGSF 249

Query:   187 NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN 227
             +TLRLCDK GWS++L+KP+TGS++++ WS D TQIAGAC N
Sbjct:   250 HTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGN 290

GO:0005932 "microtubule basal body" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

UNIPROTKB|E1BT30 IFT80 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 514 (186.0 bits), Expect = 1.1e-59, Sum P(2) = 1.1e-59
 Identities = 96/166 (57%), Positives = 121/166 (72%)

Query:    68 WPQALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLIL 126
             W ++  L  TL     PVYS AW PDS KVL T  K L+IKPL PN K  +W+AHDGLIL
Sbjct:   134 WSKSGMLRSTLAQQGTPVYSVAWGPDSEKVLYTSGKQLIIKPLQPNVKLLQWKAHDGLIL 193

Query:   127 KVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY 186
             K  W S  +LILS GEDCKYK   VWD+ G  LYSS  H++PI+S+AW+  G++FAVGS+
Sbjct:   194 KTDWNSVNELILSAGEDCKYK---VWDSYGHLLYSSQPHEYPITSVAWSGDGELFAVGSF 250

Query:   187 NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIF 232
             +TLRLCDK GWS++L+KP+TGS++++ WS D TQ+AGAC N   IF
Sbjct:   251 HTLRLCDKTGWSYALEKPNTGSIFNIAWSVDGTQLAGACGNGHVIF 296

GO:0001649 "osteoblast differentiation" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0060271 "cilium morphogenesis" evidence=IEA

GO:0060349 "bone morphogenesis" evidence=IEA

UNIPROTKB|H3BRJ5 H3BRJ5 "Uncharacterized protein" [Homo sapiens (taxid:9606)]

 Score = 539 (194.8 bits), Expect = 1.4e-59, Sum P(2) = 1.4e-59
 Identities = 95/145 (65%), Positives = 116/145 (80%)

Query:    83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGE 142
             PVYS AW PDS KVL T  K L+IKPL PN K  +W+AHDG+ILKV W S  DLILS GE
Sbjct:   320 PVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGE 379

Query:   143 DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLD 202
             DCKYK   VWD+ GR LY+S  H+HPI+S+AWAP G++FAVGS++TLRLCDK GWS++L+
Sbjct:   380 DCKYK---VWDSYGRPLYNSQPHEHPITSVAWAPDGELFAVGSFHTLRLCDKTGWSYALE 436

Query:   203 KPDTGSVYDLVWSNDATQIAGACAN 227
             KP+TGS++++ WS D TQIAGAC N
Sbjct:   437 KPNTGSIFNIAWSIDGTQIAGACGN 461

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1915509 Ift80 "intraflagellar transport 80" [Mus musculus (taxid:10090)]

 Score = 540 (195.1 bits), Expect = 6.8e-54, Sum P(2) = 6.8e-54
 Identities = 99/161 (61%), Positives = 120/161 (74%)

Query:    68 WPQALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLIL 126
             W +   L  TL     PVYS AW PDS KVL T  K L+IKPL PN K  +W+AHDG+IL
Sbjct:   133 WSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIIL 192

Query:   127 KVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY 186
             KV W S  DLILS GEDCKYK   VWD+ GR LY S  H+HPI+S+AWAP G++FAVGS+
Sbjct:   193 KVDWNSVNDLILSAGEDCKYK---VWDSYGRVLYGSQPHEHPITSVAWAPDGELFAVGSF 249

Query:   187 NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN 227
             +TLRLCDK GWS++L+KP+TGS++++ WS D TQIAGAC N
Sbjct:   250 HTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGN 290

GO:0001649 "osteoblast differentiation" evidence=IGI;IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005929 "cilium" evidence=IDA

GO:0007224 "smoothened signaling pathway" evidence=IMP

GO:0042995 "cell projection" evidence=IEA

GO:0060271 "cilium morphogenesis" evidence=IMP

GO:0060349 "bone morphogenesis" evidence=IMP

RGD|1312006 Ift80 "intraflagellar transport 80 homolog (Chlamydomonas)" [Rattus norvegicus (taxid:10116)]

 Score = 538 (194.4 bits), Expect = 1.2e-53, Sum P(2) = 1.2e-53
 Identities = 99/161 (61%), Positives = 120/161 (74%)

Query:    68 WPQALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLIL 126
             W +   L  TL     PVYS AW PDS KVL T  K L+IKPL PN K  +W+AHDG+IL
Sbjct:   133 WSKTGMLRSTLAQQGIPVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIIL 192

Query:   127 KVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY 186
             KV W S  DLILS GEDCKYK   VWD+ GR LY S  H+HPI+S+AWAP G++FAVGS+
Sbjct:   193 KVDWNSVNDLILSAGEDCKYK---VWDSYGRVLYGSQPHEHPITSVAWAPDGELFAVGSF 249

Query:   187 NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN 227
             +TLRLCDK GWS++L+KP+TGS++++ WS D TQIAGAC N
Sbjct:   250 HTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGN 290

GO:0001649 "osteoblast differentiation" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005929 "cilium" evidence=ISO

GO:0005932 "microtubule basal body" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA;ISO

GO:0035085 "cilium axoneme" evidence=IEA

GO:0060271 "cilium morphogenesis" evidence=IEA;ISO

GO:0060349 "bone morphogenesis" evidence=IEA;ISO

WB|WBGene00000484 che-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 372 (136.0 bits), Expect = 1.8e-41, Sum P(2) = 1.8e-41
 Identities = 76/154 (49%), Positives = 98/154 (63%)

Query:    84 VYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGED 143
             VY  AW   S+ VL   A    IK L       KW+AHDG+IL   W  ++DLI++GGED
Sbjct:   148 VYCVAWDSTSSNVLYCNADHCYIKSLKMQVAPIKWKAHDGIILCCDWNPTSDLIVTGGED 207

Query:   144 CKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLDK 203
              K+K   VWD  G+ L++S  HD+PI+S++W   G +FAVGS+N LRLCDK GWSHSL+K
Sbjct:   208 LKFK---VWDGFGQILFNSSVHDYPITSISWNTDGTLFAVGSHNILRLCDKSGWSHSLEK 264

Query:   204 PDTGSVYDLVWSNDATQIA-GACANVI---HIFD 233
              + GSV  L WS D TQ+A G  A ++   HI D
Sbjct:   265 MNAGSVMALSWSPDGTQLAVGTAAGLVFHAHIID 298

GO:0042384 "cilium assembly" evidence=IMP

GO:0040024 "dauer larval development" evidence=IGI

GO:0006935 "chemotaxis" evidence=IMP

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IGI

GO:0031513 "nonmotile primary cilium" evidence=IDA

GO:0005198 "structural molecule activity" evidence=IMP

FB|FBgn0032891 Oseg5 "Oseg5" [Drosophila melanogaster (taxid:7227)]

 Score = 316 (116.3 bits), Expect = 1.4e-34, Sum P(2) = 1.4e-34
 Identities = 55/137 (40%), Positives = 89/137 (64%)

Query:    87 AAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKY 146
             A W+P+SN ++  Q   + IKPL+ N+K  +W+AHDGL+L ++W + +++I SGGED ++
Sbjct:   168 ARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRF 227

Query:   147 KASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHS---LDK 203
             K   +WD  G  L++S   ++ I+S+A+ P  D   VG++N L+LC   GWS++      
Sbjct:   228 K---IWDAQGANLFTSAAEEYAITSVAFNPEKDYLLVGTFNLLKLCHSNGWSYNTARFSS 284

Query:   204 PDTGSVYDLVWSNDATQ 220
             P  GS+++L WS D TQ
Sbjct:   285 PRVGSIFNLSWSADGTQ 301

GO:0042384 "cilium assembly" evidence=ISM;IEP

GO:0031513 "nonmotile primary cilium" evidence=IDA

GO:0035058 "nonmotile primary cilium assembly" evidence=ISS

UNIPROTKB|F1N0G0 F1N0G0 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 256 (95.2 bits), Expect = 1.9e-30, Sum P(2) = 1.9e-30
 Identities = 54/161 (33%), Positives = 80/161 (49%)

Query:    68 WPQALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLIL 126
             W +   L  TL +    VYS  W PD    L T +K    +P  P       ++   L L
Sbjct:   121 WSKTGMLRSTLAHQGMSVYSITWPPDVKIYLYTSSKEKSERPWQPTPVLLPGKSPSSLFL 180

Query:   127 KVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY 186
             ++ W     LI+   ED K +    W     +LY    HD      AW   G++  + + 
Sbjct:   181 RLQWYHQKSLIIDQSEDIKKR----WQESTEELYKKDLHDPDNHDGAWRADGNLLKILTV 236

Query:   187 NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN 227
             +TL +C + GWS++L+KP+TGS++++ WS D TQIAGAC N
Sbjct:   237 DTLSICGETGWSYALEKPNTGSIFNIAWSVDGTQIAGACGN 277

GO:0060349 "bone morphogenesis" evidence=IEA

GO:0060271 "cilium morphogenesis" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8K057	IFT80_MOUSE	No assigned EC number	0.6551	0.4396	0.1827	yes	N/A
Q66HB3	IFT80_RAT	No assigned EC number	0.6551	0.4396	0.1827	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	323
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-11
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-05

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 53/247 (21%), Positives = 97/247 (39%), Gaps = 24/247 (9%)

Query: 83  PVYSAAWSPDSNKVLLT-QAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGG 141
           PV   A S D   +      K++ +  L           H   +  VA+     ++ S  
Sbjct: 53  PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS 112

Query: 142 EDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWS- 198
            D   K   VWD + G+ L +   H   ++S+A++P G   A  S + T++L D      
Sbjct: 113 RDKTIK---VWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169

Query: 199 -HSLDKPDTGSVYDLVWSNDATQ-IAGACANVIHIFDISSSSSSNVTAPLSHSHEITQLA 256
             +L    TG V  + +S D  + ++ +    I ++D+S+           H + +  +A
Sbjct: 170 VATLTGH-TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT--LRGHENGVNSVA 226

Query: 257 VNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPD------TGSVYDLVWSSDATQIAGAC 310
            +  G L          + D  + +W     +        T SV  L WS D  ++A   
Sbjct: 227 FSPDGYL------LASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGS 280

Query: 311 ANGSLLL 317
           A+G++ +
Sbjct: 281 ADGTIRI 287

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 56/258 (21%), Positives = 93/258 (36%), Gaps = 50/258 (19%)

Query: 83  PVYSAAWSPDSNKVLLTQAKSLVIK--PLSPNNKATKWQAHDGLILKVAWCSSTDLILSG 140
            V   A+SPD    L T +    IK   L         + H G +  VA  +    + SG
Sbjct: 11  GVTCVAFSPDGKL-LATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASG 69

Query: 141 GEDCKYKASFVWDTDGRQLYSSLT-HDHPISSLAWAPGGDMFAVGSY-NTLRL------- 191
             D   K   +WD +  +   +LT H   +SS+A++P G + +  S   T+++       
Sbjct: 70  SSD---KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK 126

Query: 192 CDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN-VIHIFDISSSSSSNVTAPLSHSH 250
           C      H      T  V  + +S D T +A +  +  I ++D+ +     V     H+ 
Sbjct: 127 CLTTLRGH------TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC--VATLTGHTG 178

Query: 251 EITQLAVNQTGSLQERHVAFIDKNRDLYLS-------MWSHSLDKP------DTGSVYDL 297
           E+               VAF      L  S       +W  S  K           V  +
Sbjct: 179 EV-------------NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV 225

Query: 298 VWSSDATQIAGACANGSL 315
            +S D   +A    +G++
Sbjct: 226 AFSPDGYLLASGSEDGTI 243

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 46/215 (21%), Positives = 86/215 (40%), Gaps = 31/215 (14%)

Query: 118 WQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLT-HDHPISSLAWAP 176
            + H G +  VA+     L+ +G  D   K   VWD +  +L  +L  H  P+  +A + 
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIK---VWDLETGELLRTLKGHTGPVRDVAASA 61

Query: 177 GGDMFAVGSY-NTLRLCDKVGWSHSLDKP------DTGSVYDLVWSNDATQIAGA-CANV 228
            G   A GS   T+RL     W     +        T  V  + +S D   ++ +     
Sbjct: 62  DGTYLASGSSDKTIRL-----WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKT 116

Query: 229 IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDK 288
           I ++D+   +   +T    H+  +  +A +  G+     VA     +D  + +W     K
Sbjct: 117 IKVWDV--ETGKCLTTLRGHTDWVNSVAFSPDGTF----VASSS--QDGTIKLWDLRTGK 168

Query: 289 PD------TGSVYDLVWSSDATQIAGACANGSLLL 317
                   TG V  + +S D  ++  + ++G++ L
Sbjct: 169 CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.9 bits (133), Expect = 1e-08
 Identities = 49/251 (19%), Positives = 90/251 (35%), Gaps = 24/251 (9%)

Query: 81  SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKV--AWCSSTDLIL 138
           + PV S A+SPD   ++ + +    I+    +          G    V  ++     L+ 
Sbjct: 198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLA 257

Query: 139 SGGEDCKYKASFVWD--TDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKV 195
           SG  D   +   +WD  +    L +   H   + S+A++P G + A GS   T+RL D  
Sbjct: 258 SGSSDGTIR---LWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE 314

Query: 196 GWSHSLDKPDTGS---VYDLVWSNDATQIAGACA--NVIHIFDISSSSSSNVTAPLSHSH 250
                      G    V  L +S D + +    +    I ++D+ +         L    
Sbjct: 315 TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT---LEGHS 371

Query: 251 EITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKP----DTGSVYDLVWSSDATQI 306
            +  ++     S   R V+    +  + L   S           T  V  L +S D   +
Sbjct: 372 NVLSVSF----SPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSL 427

Query: 307 AGACANGSLLL 317
           A   ++ ++ L
Sbjct: 428 ASGSSDNTIRL 438

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.5 bits (101), Expect = 9e-05
 Identities = 50/250 (20%), Positives = 96/250 (38%), Gaps = 21/250 (8%)

Query: 83  PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQ---AHDGLILKVAWCS--STDLI 137
            + S A+SPD   +L   +   +      N +         HD  + K+A  S     ++
Sbjct: 67  SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSIL 126

Query: 138 LSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY--NTLRLCDKV 195
           L+          +   T G+ + +   H   ++SLA++P G + A GS    T++L D  
Sbjct: 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186

Query: 196 GWSH-SLDKPDTGSVYDLVWSNDATQIA--GACANVIHIFDISSSSSSNVTAPLSHSHEI 252
                S     T  V  L +S D   +   G+    I ++D+S+      T        +
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV 246

Query: 253 TQLAVNQ----TGSLQERHVAF-IDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIA 307
           +  + +     +GS       + +  +  L  ++  HS       SV  + +S D   +A
Sbjct: 247 SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS------SSVLSVAFSPDGKLLA 300

Query: 308 GACANGSLLL 317
              ++G++ L
Sbjct: 301 SGSSDGTVRL 310

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	323
KOG0271|consensus	480		100.0
KOG0272|consensus	459		100.0
KOG0286|consensus	343		100.0
KOG0271|consensus	480		100.0
KOG0279|consensus	315		100.0
KOG0272|consensus	459		100.0
KOG0284|consensus	464		100.0
KOG0645|consensus	312		100.0
KOG0315|consensus	311		100.0
KOG0263|consensus	707		100.0
KOG0273|consensus	524		100.0
KOG0318|consensus	603		100.0
KOG0279|consensus	315		100.0
KOG0293|consensus	519		100.0
KOG0291|consensus	893		100.0
KOG0263|consensus	707		100.0
KOG0286|consensus	343		100.0
KOG0265|consensus	338		100.0
KOG0318|consensus	603		100.0
KOG0291|consensus	893		100.0
KOG0273|consensus	524		100.0
KOG0266|consensus	456		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0284|consensus	464		100.0
KOG0645|consensus	312		100.0
KOG0295|consensus	406		100.0
KOG0295|consensus	406		100.0
KOG0285|consensus	460		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0277|consensus	311		100.0
KOG0315|consensus	311		100.0
KOG0266|consensus	456		100.0
KOG0285|consensus	460		100.0
KOG0306|consensus	888		100.0
KOG0265|consensus	338		100.0
KOG0296|consensus	399		100.0
KOG0278|consensus	334		100.0
KOG0316|consensus	307		100.0
KOG0973|consensus	942		100.0
KOG0276|consensus	794		100.0
KOG0643|consensus	327		99.98
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.98
KOG0282|consensus	503		99.98
KOG0319|consensus	775		99.98
KOG0283|consensus	712		99.98
KOG0292|consensus	1202		99.97
KOG0276|consensus	794		99.97
KOG0313|consensus	423		99.97
KOG0305|consensus	484		99.97
KOG0641|consensus	350		99.97
KOG0275|consensus	508		99.97
KOG0292|consensus	1202		99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG1407|consensus	313		99.97
KOG0310|consensus	487		99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0296|consensus	399		99.97
KOG0772|consensus	641		99.97
KOG0640|consensus	430		99.97
KOG0281|consensus	499		99.97
KOG0278|consensus	334		99.97
KOG0282|consensus	503		99.97
KOG0319|consensus	775		99.97
KOG0316|consensus	307		99.97
KOG0281|consensus	499		99.97
KOG1446|consensus	311		99.96
KOG0264|consensus	422		99.96
PTZ00420	568	coronin; Provisional	99.96
KOG1407|consensus	313		99.96
KOG0288|consensus	459		99.96
KOG0647|consensus	347		99.96
KOG2096|consensus	420		99.96
KOG1332|consensus	299		99.96
KOG0310|consensus	487		99.96
KOG0275|consensus	508		99.96
KOG0277|consensus	311		99.95
KOG0293|consensus	519		99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0294|consensus	362		99.95
KOG0289|consensus	506		99.95
KOG0313|consensus	423		99.95
KOG0283|consensus	712		99.95
KOG1446|consensus	311		99.95
KOG0299|consensus	479		99.95
KOG1036|consensus	323		99.95
KOG0268|consensus	433		99.95
KOG2055|consensus	514		99.95
KOG0647|consensus	347		99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0639|consensus	705		99.95
KOG0973|consensus	942		99.95
KOG0641|consensus	350		99.94
KOG0300|consensus	481		99.94
KOG0301|consensus	745		99.94
KOG1036|consensus	323		99.94
KOG0643|consensus	327		99.94
KOG0289|consensus	506		99.94
KOG0306|consensus	888		99.94
KOG0268|consensus	433		99.94
KOG0639|consensus	705		99.94
KOG1274|consensus	933		99.94
KOG0650|consensus	733		99.94
KOG0288|consensus	459		99.94
KOG0305|consensus	484		99.93
KOG0640|consensus	430		99.93
KOG2445|consensus	361		99.93
KOG0269|consensus	839		99.93
KOG1063|consensus	764		99.93
KOG0308|consensus	735		99.93
KOG0772|consensus	641		99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG0274|consensus	537		99.93
KOG0274|consensus	537		99.93
KOG0299|consensus	479		99.92
KOG1539|consensus	910		99.92
KOG2048|consensus	691		99.92
KOG0646|consensus	476		99.92
KOG0294|consensus	362		99.92
KOG0308|consensus	735		99.92
KOG0267|consensus	825		99.92
KOG0264|consensus	422		99.92
KOG2106|consensus	626		99.92
KOG1063|consensus	764		99.92
KOG1408|consensus	1080		99.91
KOG1274|consensus	933		99.91
KOG1332|consensus	299		99.91
KOG1538|consensus	1081		99.91
KOG2106|consensus	626		99.91
KOG2096|consensus	420		99.9
KOG0300|consensus	481		99.9
KOG0267|consensus	825		99.9
KOG1273|consensus	405		99.9
KOG0646|consensus	476		99.9
KOG1524|consensus	737		99.9
KOG0301|consensus	745		99.89
KOG1539|consensus	910		99.89
KOG0302|consensus	440		99.89
KOG4283|consensus	397		99.89
KOG0269|consensus	839		99.89
KOG4328|consensus	498		99.88
KOG4328|consensus	498		99.88
KOG4283|consensus	397		99.88
KOG2048|consensus	691		99.88
KOG1007|consensus	370		99.88
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.88
KOG2055|consensus	514		99.87
KOG1034|consensus	385		99.87
KOG0303|consensus	472		99.87
KOG2919|consensus	406		99.87
KOG1524|consensus	737		99.87
KOG0650|consensus	733		99.86
KOG0270|consensus	463		99.86
KOG1009|consensus	434		99.86
KOG0321|consensus	720		99.86
KOG0302|consensus	440		99.86
KOG1445|consensus	1012		99.86
KOG1538|consensus	1081		99.86
KOG0307|consensus	1049		99.85
KOG1273|consensus	405		99.85
KOG1408|consensus	1080		99.85
PRK01742	429	tolB translocation protein TolB; Provisional	99.85
PRK01742	429	tolB translocation protein TolB; Provisional	99.85
KOG0307|consensus	1049		99.85
PRK11028	330	6-phosphogluconolactonase; Provisional	99.84
KOG2919|consensus	406		99.84
KOG4378|consensus	673		99.84
KOG4497|consensus	447		99.83
KOG1523|consensus	361		99.83
KOG0290|consensus	364		99.83
KOG2445|consensus	361		99.83
KOG4378|consensus	673		99.83
KOG1587|consensus	555		99.82
PRK05137	435	tolB translocation protein TolB; Provisional	99.82
KOG0270|consensus	463		99.82
KOG4497|consensus	447		99.82
KOG1188|consensus	376		99.82
PRK03629	429	tolB translocation protein TolB; Provisional	99.82
PRK03629	429	tolB translocation protein TolB; Provisional	99.81
KOG0321|consensus	720		99.81
KOG4227|consensus	609		99.81
PRK05137	435	tolB translocation protein TolB; Provisional	99.8
KOG0290|consensus	364		99.8
KOG1445|consensus	1012		99.79
PRK02889	427	tolB translocation protein TolB; Provisional	99.79
PRK04922	433	tolB translocation protein TolB; Provisional	99.79
KOG1009|consensus	434		99.79
PRK04922	433	tolB translocation protein TolB; Provisional	99.78
PRK02889	427	tolB translocation protein TolB; Provisional	99.78
KOG2394|consensus	636		99.78
KOG1034|consensus	385		99.77
KOG0771|consensus	398		99.76
KOG0642|consensus	577		99.76
COG2319	466	FOG: WD40 repeat [General function prediction only	99.76
KOG1007|consensus	370		99.76
KOG0771|consensus	398		99.76
KOG2110|consensus	391		99.76
COG2319	466	FOG: WD40 repeat [General function prediction only	99.75
KOG1963|consensus	792		99.75
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.75
KOG0303|consensus	472		99.74
PRK04792	448	tolB translocation protein TolB; Provisional	99.73
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.73
PRK11028	330	6-phosphogluconolactonase; Provisional	99.73
KOG1963|consensus	792		99.72
KOG2110|consensus	391		99.72
KOG2139|consensus	445		99.72
PRK00178	430	tolB translocation protein TolB; Provisional	99.72
KOG0322|consensus	323		99.72
KOG4227|consensus	609		99.72
PRK00178	430	tolB translocation protein TolB; Provisional	99.71
KOG2321|consensus	703		99.71
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.69
KOG1523|consensus	361		99.69
PRK04792	448	tolB translocation protein TolB; Provisional	99.69
KOG0644|consensus	1113		99.68
KOG0649|consensus	325		99.68
KOG0642|consensus	577		99.68
PRK01029	428	tolB translocation protein TolB; Provisional	99.67
KOG1272|consensus	545		99.67
KOG1188|consensus	376		99.67
PRK01029	428	tolB translocation protein TolB; Provisional	99.66
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.66
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.66
KOG1272|consensus	545		99.65
KOG2111|consensus	346		99.64
KOG1240|consensus	1431		99.64
KOG1587|consensus	555		99.63
PRK04043	419	tolB translocation protein TolB; Provisional	99.62
KOG1517|consensus	1387		99.62
KOG1310|consensus	758		99.62
KOG0649|consensus	325		99.62
KOG0322|consensus	323		99.61
KOG2139|consensus	445		99.6
KOG1310|consensus	758		99.59
KOG2111|consensus	346		99.58
PRK04043	419	tolB translocation protein TolB; Provisional	99.58
KOG1334|consensus	559		99.57
KOG2321|consensus	703		99.56
COG4946	668	Uncharacterized protein related to the periplasmic	99.56
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.55
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.55
KOG1517|consensus	1387		99.54
KOG0644|consensus	1113		99.54
KOG3881|consensus	412		99.54
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.53
KOG2394|consensus	636		99.53
KOG3881|consensus	412		99.49
KOG0974|consensus	967		99.46
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.45
KOG2315|consensus	566		99.44
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.44
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.43
KOG1334|consensus	559		99.43
KOG1409|consensus	404		99.43
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.42
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.41
KOG1354|consensus	433		99.39
KOG1240|consensus	1431		99.37
KOG0280|consensus	339		99.35
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.32
COG4946	668	Uncharacterized protein related to the periplasmic	99.3
KOG4547|consensus	541		99.3
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	99.29
KOG0309|consensus	1081		99.29
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.28
KOG1064|consensus	2439		99.28
KOG0974|consensus	967		99.27
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.26
KOG2314|consensus	698		99.25
KOG2315|consensus	566		99.22
KOG3914|consensus	390		99.22
KOG2041|consensus	1189		99.21
KOG2041|consensus	1189		99.21
KOG0280|consensus	339		99.16
KOG1354|consensus	433		99.14
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.14
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.09
KOG1409|consensus	404		99.06
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.06
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	99.06
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.05
KOG4532|consensus	344		99.03
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.03
KOG2314|consensus	698		99.02
KOG4547|consensus	541		98.99
KOG4714|consensus	319		98.98
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.92
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.91
KOG4190|consensus	1034		98.91
KOG3914|consensus	390		98.9
KOG2066|consensus	846		98.88
KOG1912|consensus	1062		98.87
KOG1920|consensus	1265		98.86
KOG0309|consensus	1081		98.83
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.81
KOG1064|consensus	2439		98.8
KOG4532|consensus	344		98.78
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.78
KOG2695|consensus	425		98.76
PRK02888	635	nitrous-oxide reductase; Validated	98.73
KOG1920|consensus	1265		98.72
KOG4190|consensus	1034		98.69
KOG3621|consensus	726		98.66
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.62
KOG1832|consensus	1516		98.61
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.6
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.6
KOG0882|consensus	558		98.59
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.58
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.58
KOG3617|consensus	1416		98.58
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.55
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.52
KOG1912|consensus	1062		98.52
PRK02888	635	nitrous-oxide reductase; Validated	98.52
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.48
KOG1275|consensus	1118		98.47
PRK13616	591	lipoprotein LpqB; Provisional	98.46
KOG4714|consensus	319		98.46
KOG1275|consensus	1118		98.4
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.38
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.38
KOG2114|consensus	933		98.37
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.34
KOG2114|consensus	933		98.32
KOG1008|consensus	783		98.3
KOG2066|consensus	846		98.29
COG3391	381	Uncharacterized conserved protein [Function unknow	98.28
KOG0882|consensus	558		98.27
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.24
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.23
KOG1832|consensus	1516		98.23
KOG2695|consensus	425		98.22
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.15
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.15
KOG3617|consensus	1416		98.03
KOG3621|consensus	726		98.02
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.0
PRK13616	591	lipoprotein LpqB; Provisional	97.97
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.92
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.92
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.91
KOG1008|consensus	783		97.9
COG3391	381	Uncharacterized conserved protein [Function unknow	97.9
KOG1645|consensus	463		97.89
KOG1645|consensus	463		97.88
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.88
KOG4640|consensus	665		97.77
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.76
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.73
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.71
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.65
KOG4649|consensus	354		97.64
KOG4640|consensus	665		97.63
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.61
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.58
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.58
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.57
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.53
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.48
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.48
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.47
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.46
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.42
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.4
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.3
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.26
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.26
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.23
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.23
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.18
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.14
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.13
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.11
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.08
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.08
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.01
KOG2395|consensus	644		96.98
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.84
KOG4649|consensus	354		96.83
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.76
PLN00033	398	photosystem II stability/assembly factor; Provisio	96.74
KOG2079|consensus	1206		96.71
KOG2395|consensus	644		96.67
KOG2280|consensus	829		96.65
PRK10115	686	protease 2; Provisional	96.63
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.54
KOG2280|consensus	829		96.3
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.29
PRK13684	334	Ycf48-like protein; Provisional	96.26
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.17
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.04
KOG2377|consensus	657		95.97
KOG2079|consensus	1206		95.94
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.93
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.78
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.77
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.7
KOG1897|consensus	1096		95.63
KOG2247|consensus	615		95.62
KOG4499|consensus	310		95.61
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.6
KOG1897|consensus	1096		95.57
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.5
COG5167	776	VID27 Protein involved in vacuole import and degra	95.48
KOG3630|consensus	1405		95.43
COG4590	733	ABC-type uncharacterized transport system, permeas	95.21
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.21
KOG4499|consensus	310		95.18
KOG1916|consensus	1283		95.07
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	94.88
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.81
KOG2444|consensus	238		94.8
KOG4460|consensus	741		94.78
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.74
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.73
PHA02713	557	hypothetical protein; Provisional	94.68
KOG2444|consensus	238		94.64
KOG2377|consensus	657		94.53
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	94.28
KOG3630|consensus	1405		94.21
PRK13684	334	Ycf48-like protein; Provisional	94.14
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.97
KOG2247|consensus	615		93.85
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.75
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	93.65
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.39
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.2
KOG4441|consensus	571		93.14
KOG1520|consensus	376		92.69
COG4590	733	ABC-type uncharacterized transport system, permeas	92.61
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.51
KOG1916|consensus	1283		92.36
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	92.24
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	92.06
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.05
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.92
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	91.92
PHA03098	534	kelch-like protein; Provisional	91.73
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	91.66
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	91.62
PRK10115	686	protease 2; Provisional	91.42
KOG4460|consensus	741		91.14
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	90.98
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.96
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	90.94
PHA02713	557	hypothetical protein; Provisional	90.94
KOG1520|consensus	376		90.91
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	90.58
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	90.5
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	90.23
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	89.82
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	89.38
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	89.33
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.57
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.39
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	87.81
KOG4441|consensus	571		87.5
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	87.3
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	87.24
COG5167	776	VID27 Protein involved in vacuole import and degra	87.23
PRK13613	599	lipoprotein LpqB; Provisional	86.8
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	85.7
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	85.4
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	85.12
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	83.94
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	83.26
COG5276	370	Uncharacterized conserved protein [Function unknow	83.22
PF13449	326	Phytase-like: Esterase-like activity of phytase	83.02
PF12768	281	Rax2: Cortical protein marker for cell polarity	82.74
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	82.47
PF13449	326	Phytase-like: Esterase-like activity of phytase	82.4
PHA03098	534	kelch-like protein; Provisional	82.39
COG5276	370	Uncharacterized conserved protein [Function unknow	82.17
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	82.15
PHA02790	480	Kelch-like protein; Provisional	81.79
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	81.58

>KOG0271|consensus

Probab=100.00  E-value=2.9e-46  Score=291.42  Aligned_cols=270  Identities=19%  Similarity=0.239  Sum_probs=232.0

Q ss_pred             eeeeEeecccceeEeeEeccCCcceeeeeeccccccccceeeec---------CCCCCEEEEEEcCCCCeEEEEeeCCeE
Q psy11524         35 KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTL---------NVSPPVYSAAWSPDSNKVLLTQAKSLV  105 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~sp~~~~l~~~~~~~~~  105 (323)
                      .....+.||.++|.++.|+|+|    ..+++|+-|.+.++|...         .|...|.|++|+|||+.||+|+.+ |.
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g----~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~d-g~  180 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTG----SRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKD-GS  180 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCC----ceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccC-Ce
Confidence            3446789999999999999999    567777766666665432         399999999999999999999777 69


Q ss_pred             EEEeCCCCc---eeEeeccCCCeEEEEECC-----CCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEec
Q psy11524        106 IKPLSPNNK---ATKWQAHDGLILKVAWCS-----STDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAP  176 (323)
Q Consensus       106 v~~~~~~~~---~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p  176 (323)
                      |.+||....   ...+.+|...|++++|.|     ..++||+++.||.++   |||+. +.++..+.+|..+|+|+.|--
T Consensus       181 I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vr---IWd~~~~~~~~~lsgHT~~VTCvrwGG  257 (480)
T KOG0271|consen  181 IRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVR---IWDTKLGTCVRTLSGHTASVTCVRWGG  257 (480)
T ss_pred             EEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEE---EEEccCceEEEEeccCccceEEEEEcC
Confidence            999997654   567899999999999976     467999999999999   99997 678888999999999999975


Q ss_pred             CCCEEEEEeCC-eEEEEeCCC-Ce--------------------------------------------------------
Q psy11524        177 GGDMFAVGSYN-TLRLCDKVG-WS--------------------------------------------------------  198 (323)
Q Consensus       177 ~~~~l~~~~~~-~i~i~d~~~-~~--------------------------------------------------------  198 (323)
                      +| ++++++.| +|++|+... ..                                                        
T Consensus       258 ~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~  336 (480)
T KOG0271|consen  258 EG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG  336 (480)
T ss_pred             Cc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence            44 67788777 888887432 11                                                        


Q ss_pred             -----------------------eeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEE
Q psy11524        199 -----------------------HSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQ  254 (323)
Q Consensus       199 -----------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~  254 (323)
                                             +..+.+|..-|..+.||||++++|+++-|+ |++||.++|+.+.+  +.+|-.+|+.
T Consensus       337 erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~las--fRGHv~~VYq  414 (480)
T KOG0271|consen  337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLAS--FRGHVAAVYQ  414 (480)
T ss_pred             ceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhh--hhhccceeEE
Confidence                                   123456788899999999999999999999 99999999999999  8999999999


Q ss_pred             EEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        255 LAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       255 ~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      ++|+.|.    +.|..++.|..+++|++.+.    -+.+|...|.++.|+|||+.+++|+.|..+++|.
T Consensus       415 vawsaDs----RLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  415 VAWSADS----RLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEeccCc----cEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            9999998    78888888888888888775    4567899999999999999999999999999995

>KOG0272|consensus

Probab=100.00  E-value=3.9e-45  Score=288.27  Aligned_cols=265  Identities=17%  Similarity=0.202  Sum_probs=237.7

Q ss_pred             cccceeEeeEeccCCcceeeeeeccccccccceee--------ec-CCCCCEEEEEEcCC--CCeEEEEeeCCeEEEEeC
Q psy11524         42 RYDGTVINYPISPYISVLHSYAASHSWPQALSLCR--------TL-NVSPPVYSAAWSPD--SNKVLLTQAKSLVIKPLS  110 (323)
Q Consensus        42 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~v~~~~~sp~--~~~l~~~~~~~~~v~~~~  110 (323)
                      +-+.+|..+.|++|+    ..+++++|++..++|.        +| +|.+.|.++.|+|.  +..+|+|+.| |.+++|+
T Consensus       173 gd~rPis~~~fS~ds----~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~D-gtvklw~  247 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDS----KHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASAD-GTVKLWK  247 (459)
T ss_pred             cCCCcceeeEeecCC----CeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccC-Cceeeec
Confidence            557899999999999    5667777777766653        33 49999999999997  6689999888 6999999


Q ss_pred             CCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC
Q psy11524        111 PNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN  187 (323)
Q Consensus       111 ~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~  187 (323)
                      ..+.  +..+.+|..+|..++|+|+|++|+|++.|.+-+   +||++ ..++....+|...|.+++|.|||.++++|+.|
T Consensus       248 ~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWR---lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD  324 (459)
T KOG0272|consen  248 LSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWR---LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLD  324 (459)
T ss_pred             cCCCcchhhhhcchhhheeeeecCCCceeeecccccchh---hcccccchhhHhhcccccccceeEecCCCceeeccCcc
Confidence            8875  788999999999999999999999999999999   99996 66777788999999999999999999999998


Q ss_pred             -eEEEEeCC-CCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCc
Q psy11524        188 -TLRLCDKV-GWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQ  264 (323)
Q Consensus       188 -~i~i~d~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~  264 (323)
                       .-+|||++ +.++..+.+|...|.+++|+|+|..||+|+.|+ ++|||++..+.+.+  +..|..-|+.+.|+|..   
T Consensus       325 ~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~--ipAH~nlVS~Vk~~p~~---  399 (459)
T KOG0272|consen  325 SLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYT--IPAHSNLVSQVKYSPQE---  399 (459)
T ss_pred             chhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccccee--cccccchhhheEecccC---
Confidence             89999998 568888999999999999999999999999999 99999999998888  89999999999999944   


Q ss_pred             cceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        265 ERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       265 d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      ...|+..+.|+.+.+|...+.    ...+|.+.|.+++++||++.+++++.|.++++|.
T Consensus       400 g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  400 GYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             CeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            178888888888888887765    6778999999999999999999999999999995

>KOG0286|consensus

Probab=100.00  E-value=5.6e-40  Score=247.94  Aligned_cols=278  Identities=17%  Similarity=0.188  Sum_probs=237.1

Q ss_pred             eeeeeeEeecccceeEeeEeccCCcceeeeeecc---cccc-ccceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEE
Q psy11524         33 FVKNHLTIRRYDGTVINYPISPYISVLHSYAASH---SWPQ-ALSLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIK  107 (323)
Q Consensus        33 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~  107 (323)
                      .++...+++||.+.|+++.|++|.+.+.+...+|   .||. +....+.++ ....|..++|+|.|+++|+|+-++ ...
T Consensus        44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN-~Cs  122 (343)
T KOG0286|consen   44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN-KCS  122 (343)
T ss_pred             eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCc-eeE
Confidence            3455588999999999999999996665555444   3542 222223333 567899999999999999998775 666


Q ss_pred             EeCCCCc--------eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEec-C
Q psy11524        108 PLSPNNK--------ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAP-G  177 (323)
Q Consensus       108 ~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p-~  177 (323)
                      +|++..+        .+.+.+|.+.+.++.|.+| .+|++++.|.++.   +||++ ++.+..+.+|.+.|.+++++| +
T Consensus       123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCa---lWDie~g~~~~~f~GH~gDV~slsl~p~~  198 (343)
T KOG0286|consen  123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCA---LWDIETGQQTQVFHGHTGDVMSLSLSPSD  198 (343)
T ss_pred             EEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEE---EEEcccceEEEEecCCcccEEEEecCCCC
Confidence            6665522        4568999999999999985 5788999999999   99996 888899999999999999999 9


Q ss_pred             CCEEEEEeCC-eEEEEeCC-CCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEE
Q psy11524        178 GDMFAVGSYN-TLRLCDKV-GWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQ  254 (323)
Q Consensus       178 ~~~l~~~~~~-~i~i~d~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~  254 (323)
                      ++.|++|+-| ..++||++ +...+.+.+|...|.++.|.|+|.-+++|++|+ .++||++..+.+..+.......+|++
T Consensus       199 ~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitS  278 (343)
T KOG0286|consen  199 GNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITS  278 (343)
T ss_pred             CCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCcee
Confidence            9999999998 99999988 568889999999999999999999999999999 99999999998887544556679999


Q ss_pred             EEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        255 LAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       255 ~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      ++||-.|    +.+..+-.+..+.+|+.-..    ++.+|+..|.++..+|||--|++|+.|..++||.
T Consensus       279 v~FS~SG----RlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  279 VAFSKSG----RLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EEEcccc----cEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            9999999    88888888899999998665    6778999999999999999999999999999994

>KOG0271|consensus

Probab=100.00  E-value=1.3e-40  Score=260.03  Aligned_cols=234  Identities=18%  Similarity=0.308  Sum_probs=204.0

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-  155 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-  155 (323)
                      +|.++|.|++|+|+|+.|++|+.|. ++++||..+.  ..+.++|...|.+++|+|||+.||+|+.||+|+   +||.. 
T Consensus       113 GH~e~Vl~~~fsp~g~~l~tGsGD~-TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~---lwdpkt  188 (480)
T KOG0271|consen  113 GHGEAVLSVQFSPTGSRLVTGSGDT-TVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR---LWDPKT  188 (480)
T ss_pred             CCCCcEEEEEecCCCceEEecCCCc-eEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEE---EecCCC
Confidence            3999999999999999999999885 9999998776  788999999999999999999999999999999   99984 


Q ss_pred             -CCeeeEeecCCCceeEEEEec-----CCCEEEEEeCC-eEEEEeCC-CCeeeecCCCCccEEEEEEcCCCCEEEEEecC
Q psy11524        156 -GRQLYSSLTHDHPISSLAWAP-----GGDMFAVGSYN-TLRLCDKV-GWSHSLDKPDTGSVYDLVWSNDATQIAGACAN  227 (323)
Q Consensus       156 -~~~~~~~~~~~~~v~~~~~~p-----~~~~l~~~~~~-~i~i~d~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  227 (323)
                       ...-..+.+|...|++++|.|     ..++||+++.| .++|||+. +.++..+.+|..+|+|+.|--+| +|++++.|
T Consensus       189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~D  267 (480)
T KOG0271|consen  189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQD  267 (480)
T ss_pred             CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCC
Confidence             344567899999999999976     46789999986 99999987 45777889999999999998666 89999999


Q ss_pred             c-EEEEEcCCCc--------------------------------------------------------------------
Q psy11524        228 V-IHIFDISSSS--------------------------------------------------------------------  238 (323)
Q Consensus       228 ~-i~iwd~~~~~--------------------------------------------------------------------  238 (323)
                      + |++|+...|+                                                                    
T Consensus       268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t  347 (480)
T KOG0271|consen  268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT  347 (480)
T ss_pred             ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence            9 9999832222                                                                    


Q ss_pred             -----------eeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCC
Q psy11524        239 -----------SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDA  303 (323)
Q Consensus       239 -----------~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g  303 (323)
                                 ++..  +.+|..-|+.+.||||+    .+|+..+-|..+++|+-.++    .+++|-..|+.++||.|.
T Consensus       348 lflW~p~~~kkpi~r--mtgHq~lVn~V~fSPd~----r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDs  421 (480)
T KOG0271|consen  348 LFLWNPFKSKKPITR--MTGHQALVNHVSFSPDG----RYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADS  421 (480)
T ss_pred             EEEecccccccchhh--hhchhhheeeEEECCCc----cEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCc
Confidence                       2222  45677788888999998    89999999999999998887    778899999999999999


Q ss_pred             CeeEeeecCCeEEEEEeecC
Q psy11524        304 TQIAGACANGSLLLGTIIQR  323 (323)
Q Consensus       304 ~~l~s~~~dg~i~~~~l~~~  323 (323)
                      ++|++|+.|.++++|++..|
T Consensus       422 RLlVS~SkDsTLKvw~V~tk  441 (480)
T KOG0271|consen  422 RLLVSGSKDSTLKVWDVRTK  441 (480)
T ss_pred             cEEEEcCCCceEEEEEeeee
Confidence            99999999999999998654

>KOG0279|consensus

Probab=100.00  E-value=2e-39  Score=243.46  Aligned_cols=277  Identities=17%  Similarity=0.181  Sum_probs=221.9

Q ss_pred             eeeeEeecccceeEeeEeccCCcceeeeeeccc-------cc------cccceeeec-CCCCCEEEEEEcCCCCeEEEEe
Q psy11524         35 KNHLTIRRYDGTVINYPISPYISVLHSYAASHS-------WP------QALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQ  100 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------~~------~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~  100 (323)
                      ....++++|++.|..++..+.+..   .+.+++       |+      ..+...+.+ +|...|..+..++||++.++++
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~---~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s   82 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSD---ILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS   82 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCc---eEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc
Confidence            445689999999999999987532   233333       32      122233444 3899999999999999999998


Q ss_pred             eCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecC--CCceeEEEEec
Q psy11524        101 AKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTH--DHPISSLAWAP  176 (323)
Q Consensus       101 ~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~--~~~v~~~~~~p  176 (323)
                      .| +.+++||+.+.  .+.+.+|...|.+++|+||.+++++|+.|.+|+   +|+.-+.+..++...  ..-|.++.|+|
T Consensus        83 wD-~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTik---lwnt~g~ck~t~~~~~~~~WVscvrfsP  158 (315)
T KOG0279|consen   83 WD-GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIK---LWNTLGVCKYTIHEDSHREWVSCVRFSP  158 (315)
T ss_pred             cc-ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceee---eeeecccEEEEEecCCCcCcEEEEEEcC
Confidence            88 59999999875  678899999999999999999999999999999   999998888887665  56799999999


Q ss_pred             C--CCEEEEEeCC-eEEEEeCCCCeee-ecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccc
Q psy11524        177 G--GDMFAVGSYN-TLRLCDKVGWSHS-LDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHE  251 (323)
Q Consensus       177 ~--~~~l~~~~~~-~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~  251 (323)
                      +  ..+|++++.| ++++||+++.++. .+.+|.+.++.+++||||..+++|+.|+ +.+||++.++.+..   .++...
T Consensus       159 ~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys---l~a~~~  235 (315)
T KOG0279|consen  159 NESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS---LEAFDI  235 (315)
T ss_pred             CCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe---ccCCCe
Confidence            7  6789999998 9999999986554 6778999999999999999999999999 99999999999886   678899


Q ss_pred             eEEEEEccCCC----CccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        252 ITQLAVNQTGS----LQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       252 v~~~~~~p~g~----~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      |.+++|+|+..    ..+..|++|+.+....+.++...    ..+.......+++|++||..|++|-.|+.|++|.+.
T Consensus       236 v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  236 VNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            99999999853    22233444444444333333221    011113345789999999999999999999999985

>KOG0272|consensus

Probab=100.00  E-value=1.8e-40  Score=262.04  Aligned_cols=232  Identities=16%  Similarity=0.192  Sum_probs=213.6

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCC--CCEEEEEcCCCceEeeeEEeC
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSS--TDLILSGGEDCKYKASFVWDT  154 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~i~v~d~  154 (323)
                      ..+.+|..+.|+++++.|++|+.+ |.+++|.....  ..++.+|...+.++.|+|.  +..+|+|+.||+++   +|++
T Consensus       173 gd~rPis~~~fS~ds~~laT~sws-G~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvk---lw~~  248 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWS-GLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVK---LWKL  248 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecC-CceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCcee---eecc
Confidence            367899999999999999999888 69999998765  7889999999999999996  56899999999999   9999


Q ss_pred             CC-CeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EE
Q psy11524        155 DG-RQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IH  230 (323)
Q Consensus       155 ~~-~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~  230 (323)
                      ++ .++..+.+|...|..++|+|+|++|++++.| +-++||++++ ++....+|...|.+++|.|||..+++|+.|. -+
T Consensus       249 ~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~R  328 (459)
T KOG0272|consen  249 SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGR  328 (459)
T ss_pred             CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhh
Confidence            75 7889999999999999999999999999998 9999999865 5567788999999999999999999999999 99


Q ss_pred             EEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEee-CCCe
Q psy11524        231 IFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSS-DATQ  305 (323)
Q Consensus       231 iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~-~g~~  305 (323)
                      |||+++|+++..  +.+|..+|.+++|+|+|    ..++.++.|+..++|+++..    +...|..-|+.+.|+| .|.+
T Consensus       329 vWDlRtgr~im~--L~gH~k~I~~V~fsPNG----y~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~f  402 (459)
T KOG0272|consen  329 VWDLRTGRCIMF--LAGHIKEILSVAFSPNG----YHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYF  402 (459)
T ss_pred             eeecccCcEEEE--ecccccceeeEeECCCc----eEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeE
Confidence            999999999998  79999999999999999    88899999999999988765    6667899999999999 6889


Q ss_pred             eEeeecCCeEEEEEe
Q psy11524        306 IAGACANGSLLLGTI  320 (323)
Q Consensus       306 l~s~~~dg~i~~~~l  320 (323)
                      |+|++.|+++++|.-
T Consensus       403 L~TasyD~t~kiWs~  417 (459)
T KOG0272|consen  403 LVTASYDNTVKIWST  417 (459)
T ss_pred             EEEcccCcceeeecC
Confidence            999999999999964

>KOG0284|consensus

Probab=100.00  E-value=2.8e-40  Score=259.86  Aligned_cols=270  Identities=17%  Similarity=0.221  Sum_probs=236.1

Q ss_pred             ecccceeEeeEeccCCcceeeeeecc---ccccccceeeec--CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-
Q psy11524         41 RRYDGTVINYPISPYISVLHSYAASH---SWPQALSLCRTL--NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-  114 (323)
Q Consensus        41 ~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-  114 (323)
                      ..-+..|..+.+.|+|+.|.....+|   .|+.+...+.++  .|..+|.++.|+++|.++++|..+ |.|+.|+.+.. 
T Consensus        93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~g-G~iKyWqpnmnn  171 (464)
T KOG0284|consen   93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKG-GMIKYWQPNMNN  171 (464)
T ss_pred             cccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCC-ceEEecccchhh
Confidence            44578899999999998887777776   366654333333  399999999999999999987554 79999998776 


Q ss_pred             eeEeeccC-CCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEE
Q psy11524        115 ATKWQAHD-GLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRL  191 (323)
Q Consensus       115 ~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i  191 (323)
                      ++.+.+|. ..|++++|+|+...+++++.||+|+   |||.. .++-..+.+|...|.+++|+|...++++++.| .|++
T Consensus       172 Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ik---iWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKl  248 (464)
T KOG0284|consen  172 VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIK---IWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKL  248 (464)
T ss_pred             hHHhhHhhhhhhheeccCCCCceeEEecCCCeEE---EEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEe
Confidence            55666665 8999999999999999999999999   99984 66667789999999999999998899999997 9999


Q ss_pred             EeCC-CCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEE
Q psy11524        192 CDKV-GWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVA  269 (323)
Q Consensus       192 ~d~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~  269 (323)
                      ||.+ +.++..+..|+..|..+.|+|++++|++++.|. ++++|+++.+.+.+  +.+|...++++.|+|-..   +.+.
T Consensus       249 WDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~--~r~Hkkdv~~~~WhP~~~---~lft  323 (464)
T KOG0284|consen  249 WDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFT--YRGHKKDVTSLTWHPLNE---SLFT  323 (464)
T ss_pred             ecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHH--hhcchhhheeeccccccc---ccee
Confidence            9987 568888889999999999999999999999999 99999998888887  799999999999999763   7888


Q ss_pred             EEeCCCCeEEEecccc-----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        270 FIDKNRDLYLSMWSHS-----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       270 ~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      ++..++.+..|.+...     +...|...|++++|+|-|..|++|+.|.++++|.
T Consensus       324 sgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  324 SGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             eccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence            8999999999988732     5566899999999999999999999999999996

>KOG0645|consensus

Probab=100.00  E-value=3.9e-36  Score=224.90  Aligned_cols=267  Identities=16%  Similarity=0.222  Sum_probs=222.2

Q ss_pred             eeeeEeecccceeEeeEeccC-Ccceeeeeeccccccccceeee-----------c--CCCCCEEEEEEcCCCCeEEEEe
Q psy11524         35 KNHLTIRRYDGTVINYPISPY-ISVLHSYAASHSWPQALSLCRT-----------L--NVSPPVYSAAWSPDSNKVLLTQ  100 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----------~--~~~~~v~~~~~sp~~~~l~~~~  100 (323)
                      -....+++|.+.+.+++++|- |    ..+++++-|+..+++..           +  .|...|.+++|+|.|++|++++
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g----~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS   80 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKG----VILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS   80 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCc----eEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee
Confidence            345678999999999999997 6    35666655555554432           2  2899999999999999999998


Q ss_pred             eCCeEEEEeCCCCc----eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC----CCeeeEeecCCCceeEE
Q psy11524        101 AKSLVIKPLSPNNK----ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD----GRQLYSSLTHDHPISSL  172 (323)
Q Consensus       101 ~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~----~~~~~~~~~~~~~v~~~  172 (323)
                      .| .++.+|.....    +..+.+|...|.+++|+++|++||++++|+.|-   ||.++    -.+...++.|...|..+
T Consensus        81 FD-~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVW---iWe~deddEfec~aVL~~HtqDVK~V  156 (312)
T KOG0645|consen   81 FD-ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVW---IWEIDEDDEFECIAVLQEHTQDVKHV  156 (312)
T ss_pred             cc-ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEE---EEEecCCCcEEEEeeeccccccccEE
Confidence            88 59999977643    678899999999999999999999999999998   99985    34667788999999999


Q ss_pred             EEecCCCEEEEEeCC-eEEEEeCC-CC---eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCC
Q psy11524        173 AWAPGGDMFAVGSYN-TLRLCDKV-GW---SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPL  246 (323)
Q Consensus       173 ~~~p~~~~l~~~~~~-~i~i~d~~-~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~  246 (323)
                      .|+|...+|++++.| +|++|+-. +.   +.+.+.+|...|.+++|+|.|..|+++++|+ ++||...+.-      ..
T Consensus       157 ~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~------~~  230 (312)
T KOG0645|consen  157 IWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL------SG  230 (312)
T ss_pred             EEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc------ch
Confidence            999999999999996 99999854 32   5678888999999999999999999999999 9999866321      23


Q ss_pred             CCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----------cCCCCccceeEEEEeeC-CCeeEeeecCCe
Q psy11524        247 SHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----------LDKPDTGSVYDLVWSSD-ATQIAGACANGS  314 (323)
Q Consensus       247 ~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~v~~~~~s~~-g~~l~s~~~dg~  314 (323)
                      .|..+++.++|. +     +.|+....++.+.++.-...           ....|+..|++++|.|. .+.|++|++||.
T Consensus       231 ~~sr~~Y~v~W~-~-----~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~  304 (312)
T KOG0645|consen  231 MHSRALYDVPWD-N-----GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGI  304 (312)
T ss_pred             hcccceEeeeec-c-----cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCce
Confidence            467889999998 4     57888888888777765442           34567889999999995 679999999999


Q ss_pred             EEEEEee
Q psy11524        315 LLLGTII  321 (323)
Q Consensus       315 i~~~~l~  321 (323)
                      |++|.+.
T Consensus       305 v~~W~l~  311 (312)
T KOG0645|consen  305 VNFWELE  311 (312)
T ss_pred             EEEEEec
Confidence            9999985

>KOG0315|consensus

Probab=100.00  E-value=6.6e-37  Score=226.48  Aligned_cols=250  Identities=14%  Similarity=0.217  Sum_probs=213.8

Q ss_pred             eeeeccccccccceeee--------cCC-CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc----eeEeeccCCCeEE
Q psy11524         61 SYAASHSWPQALSLCRT--------LNV-SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK----ATKWQAHDGLILK  127 (323)
Q Consensus        61 ~~~~~~~~~~~~~~~~~--------~~~-~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~v~~  127 (323)
                      .+++++++|.++++|+.        ++| .+.|+.+...|+++.||+++..  .|++||++..    +.++.+|...|.+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q--hvRlyD~~S~np~Pv~t~e~h~kNVta   88 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ--HVRLYDLNSNNPNPVATFEGHTKNVTA   88 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC--eeEEEEccCCCCCceeEEeccCCceEE
Confidence            67889999988888754        445 6799999999999999988766  6888887653    7889999999999


Q ss_pred             EEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCC-e-eeecCC
Q psy11524        128 VAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGW-S-HSLDKP  204 (323)
Q Consensus       128 ~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~-~-~~~~~~  204 (323)
                      +.|..+|+.+++|++||+++   |||++.........+..+|+++..+|+...|+++.. +.|++||+... . ......
T Consensus        89 VgF~~dgrWMyTgseDgt~k---IWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe  165 (311)
T KOG0315|consen   89 VGFQCDGRWMYTGSEDGTVK---IWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE  165 (311)
T ss_pred             EEEeecCeEEEecCCCceEE---EEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC
Confidence            99999999999999999999   999987666666778899999999999889999998 49999998754 2 234444


Q ss_pred             CCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCc------eeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCe
Q psy11524        205 DTGSVYDLVWSNDATQIAGACANV-IHIFDISSSS------SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDL  277 (323)
Q Consensus       205 ~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~  277 (323)
                      ....+.++...|||.+|+.+...| .++|++-...      ++..  +..|...+....+||++    ++|+..+.+..+
T Consensus       166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k--~~ah~~~il~C~lSPd~----k~lat~ssdktv  239 (311)
T KOG0315|consen  166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHK--FQAHNGHILRCLLSPDV----KYLATCSSDKTV  239 (311)
T ss_pred             CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhh--eecccceEEEEEECCCC----cEEEeecCCceE
Confidence            557899999999999999999999 9999987643      3333  67899999999999999    788888888888


Q ss_pred             EEEecccc-----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        278 YLSMWSHS-----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       278 ~~~~~~~~-----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      ++|+.+..     ..++|...++..+||.||+||++|+.|+.+++|++.
T Consensus       240 ~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~  288 (311)
T KOG0315|consen  240 KIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS  288 (311)
T ss_pred             EEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence            88887764     456678899999999999999999999999999974

>KOG0263|consensus

Probab=100.00  E-value=1.5e-37  Score=263.07  Aligned_cols=234  Identities=22%  Similarity=0.286  Sum_probs=212.6

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc---------------------------------eeEeeccCCCe
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK---------------------------------ATKWQAHDGLI  125 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~---------------------------------~~~~~~~~~~v  125 (323)
                      .....++|..|++|++.||.|-.+ ..|++|.+...                                 ...+.+|.++|
T Consensus       376 nt~~~v~ca~fSddssmlA~Gf~d-S~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV  454 (707)
T KOG0263|consen  376 NTYQGVTCAEFSDDSSMLACGFVD-SSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV  454 (707)
T ss_pred             EcCCcceeEeecCCcchhhccccc-cEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence            356789999999999988876555 58999976520                                 23467899999


Q ss_pred             EEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCC-CCeeeec
Q psy11524        126 LKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKV-GWSHSLD  202 (323)
Q Consensus       126 ~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~-~~~~~~~  202 (323)
                      ..+.|+|+.++|+++++|++++   +|.+. ...+..+.+|..+|..+.|+|.|.+||+++.| +.++|... ..+.+.+
T Consensus       455 yg~sFsPd~rfLlScSED~svR---LWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif  531 (707)
T KOG0263|consen  455 YGCSFSPDRRFLLSCSEDSSVR---LWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF  531 (707)
T ss_pred             eeeeecccccceeeccCCccee---eeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh
Confidence            9999999999999999999999   99996 56677788999999999999999999999998 99999966 6788899


Q ss_pred             CCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEe
Q psy11524        203 KPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSM  281 (323)
Q Consensus       203 ~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~  281 (323)
                      .+|-+.|.|+.|+|++.|+++|+.|. +++||+.+|..++.  +.+|.++|.+++|||+|    .+|+.++.++.+.+|+
T Consensus       532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRi--F~GH~~~V~al~~Sp~G----r~LaSg~ed~~I~iWD  605 (707)
T KOG0263|consen  532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRI--FTGHKGPVTALAFSPCG----RYLASGDEDGLIKIWD  605 (707)
T ss_pred             cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEE--ecCCCCceEEEEEcCCC----ceEeecccCCcEEEEE
Confidence            99999999999999999999999999 99999999999998  89999999999999999    9999999999999999


Q ss_pred             cccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        282 WSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       282 ~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      +..+    .+..|.+.|.++.||.||..||+|+.|.+|++||+..
T Consensus       606 l~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  606 LANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             cCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            9886    5667899999999999999999999999999999853

>KOG0273|consensus

Probab=100.00  E-value=8.3e-37  Score=244.46  Aligned_cols=275  Identities=19%  Similarity=0.262  Sum_probs=222.9

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeeccccccccceeeec-----------------------CCCCCEEEEEEcCCCC
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTL-----------------------NVSPPVYSAAWSPDSN   94 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~v~~~~~sp~~~   94 (323)
                      ..+..|..+|.+++|+|...   ..+++++.+.+.+++...                       .....|++++|+.+|.
T Consensus       172 ~kvl~~~~~V~~~~WnP~~~---~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~  248 (524)
T KOG0273|consen  172 AKVLRHESEVFICAWNPLRD---GLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT  248 (524)
T ss_pred             eeeccCCCceEEEecCchhh---hhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC
Confidence            34555999999999999764   134444333333322211                       1357899999999999


Q ss_pred             eEEEEeeCCeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC-CCCeeeEeecCCCceeEE
Q psy11524         95 KVLLTQAKSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT-DGRQLYSSLTHDHPISSL  172 (323)
Q Consensus        95 ~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~-~~~~~~~~~~~~~~v~~~  172 (323)
                      .||+|..+ |.+++|+..+. ..++..|+++|.++.|+.+|++|++++.|+++.   +||. ++.....+.-|..+-..+
T Consensus       249 ~LatG~~~-G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~tti---lwd~~~g~~~q~f~~~s~~~lDV  324 (524)
T KOG0273|consen  249 LLATGSED-GEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTI---LWDAHTGTVKQQFEFHSAPALDV  324 (524)
T ss_pred             eEEEeecC-cEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEE---EEeccCceEEEeeeeccCCccce
Confidence            99999877 79999999887 778899999999999999999999999999999   9998 466667777787777889


Q ss_pred             EEecCCCEEEEEeCC-eEEEEeCCC-CeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCc
Q psy11524        173 AWAPGGDMFAVGSYN-TLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHS  249 (323)
Q Consensus       173 ~~~p~~~~l~~~~~~-~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~  249 (323)
                      .|-.+ ..|++++.+ .|+++-+.. .+...+.+|.+.|.++.|+|.|.+|++++.|+ ++||..........  +..|.
T Consensus       325 dW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~--l~~Hs  401 (524)
T KOG0273|consen  325 DWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHD--LQAHS  401 (524)
T ss_pred             EEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhh--hhhhc
Confidence            99754 457777765 999999874 46677888999999999999999999999999 99999988888877  79999


Q ss_pred             cceEEEEEccCCC-----CccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        250 HEITQLAVNQTGS-----LQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       250 ~~v~~~~~~p~g~-----~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      ..|..+.|+|.|.     ...-.++....++.+.+|++..+    .+..|..+|++++|||+|++||+|+.||.|++|++
T Consensus       402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~  481 (524)
T KOG0273|consen  402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWST  481 (524)
T ss_pred             cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccc
Confidence            9999999999987     22233444456666777776665    34447999999999999999999999999999987


Q ss_pred             ec
Q psy11524        321 IQ  322 (323)
Q Consensus       321 ~~  322 (323)
                      ..
T Consensus       482 ~~  483 (524)
T KOG0273|consen  482 KT  483 (524)
T ss_pred             cc
Confidence            53

>KOG0318|consensus

Probab=100.00  E-value=4.9e-35  Score=237.38  Aligned_cols=274  Identities=19%  Similarity=0.241  Sum_probs=218.2

Q ss_pred             eeEeecccceeEeeEeccCCcceeeeeeccc-------ccccc--c-eeeecC-CCCCEEEEEEcCCCCeEEEEeeCC--
Q psy11524         37 HLTIRRYDGTVINYPISPYISVLHSYAASHS-------WPQAL--S-LCRTLN-VSPPVYSAAWSPDSNKVLLTQAKS--  103 (323)
Q Consensus        37 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------~~~~~--~-~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~--  103 (323)
                      ...+..|...++-..++|.|    .|+++|.       ||.+.  . +..+++ -.++|..++|++++++|++.++..  
T Consensus        52 ~~iYtEH~~~vtVAkySPsG----~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer  127 (603)
T KOG0318|consen   52 VDIYTEHAHQVTVAKYSPSG----FYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER  127 (603)
T ss_pred             eeeeccccceeEEEEeCCCc----eEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccc
Confidence            45677899999999999999    4666653       55332  1 122333 578999999999999999887543  


Q ss_pred             -eEEEEeCCCCcee-------------------------------------------EeeccCCCeEEEEECCCCCEEEE
Q psy11524        104 -LVIKPLSPNNKAT-------------------------------------------KWQAHDGLILKVAWCSSTDLILS  139 (323)
Q Consensus       104 -~~v~~~~~~~~~~-------------------------------------------~~~~~~~~v~~~~~~~~~~~l~~  139 (323)
                       |.+++||......                                           ++..|..-|.++.|+|||+++++
T Consensus       128 fg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat  207 (603)
T KOG0318|consen  128 FGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFAT  207 (603)
T ss_pred             eeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEE
Confidence             6788998643211                                           22356778999999999999999


Q ss_pred             EcCCCceEeeeEEeC-CCCeeeEee---cCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCee---------------
Q psy11524        140 GGEDCKYKASFVWDT-DGRQLYSSL---THDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSH---------------  199 (323)
Q Consensus       140 ~~~d~~i~~i~v~d~-~~~~~~~~~---~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~---------------  199 (323)
                      ++.||++.   +||- +++.+..+.   +|++.|..++|+||++.|++++.| +++|||+....+               
T Consensus       208 ~gsDgki~---iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqv  284 (603)
T KOG0318|consen  208 AGSDGKIY---IYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQV  284 (603)
T ss_pred             ecCCccEE---EEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEE
Confidence            99999999   9997 578888887   799999999999999999999998 999999754321               


Q ss_pred             -----------------------------eecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEE----------------
Q psy11524        200 -----------------------------SLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFD----------------  233 (323)
Q Consensus       200 -----------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd----------------  233 (323)
                                                   .++.+|...|+++..+|++++|++++.|| |.-||                
T Consensus       285 G~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~n  364 (603)
T KOG0318|consen  285 GCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTN  364 (603)
T ss_pred             EEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccc
Confidence                                         23456778888888888888888888888 88887                


Q ss_pred             --------------------------------------------------------------------------------
Q psy11524        234 --------------------------------------------------------------------------------  233 (323)
Q Consensus       234 --------------------------------------------------------------------------------  233 (323)
                                                                                                      
T Consensus       365 qI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y  444 (603)
T KOG0318|consen  365 QIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGY  444 (603)
T ss_pred             eEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecccc
Confidence                                                                                            


Q ss_pred             ---------------------------cCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-
Q psy11524        234 ---------------------------ISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-  285 (323)
Q Consensus       234 ---------------------------~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-  285 (323)
                                                 +..++...+.....|.++++++++||++    .+++.+|..+.+.+|++... 
T Consensus       445 ~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~----~yla~~Da~rkvv~yd~~s~~  520 (603)
T KOG0318|consen  445 ESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDG----AYLAAGDASRKVVLYDVASRE  520 (603)
T ss_pred             ccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCC----cEEEEeccCCcEEEEEcccCc
Confidence                                       2221212221245688899999999999    89999999999999998875 


Q ss_pred             ----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        286 ----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       286 ----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                          ....|...|.+++|+|+..++|+|+-|-.|.+|++.
T Consensus       521 ~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~  560 (603)
T KOG0318|consen  521 VKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVK  560 (603)
T ss_pred             eecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence                445689999999999999999999999999999974

>KOG0279|consensus

Probab=100.00  E-value=2.8e-35  Score=221.20  Aligned_cols=237  Identities=17%  Similarity=0.213  Sum_probs=199.6

Q ss_pred             eec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-------eeEeeccCCCeEEEEECCCCCEEEEEcCCCceE
Q psy11524         76 RTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-------ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYK  147 (323)
Q Consensus        76 ~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  147 (323)
                      .++ .|.+.|+.++..+.+..++..+..+..+.+|++...       .+.+.+|...|..+..++||++.++++.|++++
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr   88 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR   88 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence            344 399999999999986655554444468999987643       667899999999999999999999999999999


Q ss_pred             eeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecCCC--CccEEEEEEcCC--CCEE
Q psy11524        148 ASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDKPD--TGSVYDLVWSND--ATQI  221 (323)
Q Consensus       148 ~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l  221 (323)
                         +||+. ++..+.+.+|...|.+++|+||++.+++|+.| +|++|+..+.+...+..+  .+.|.++.|+|+  ..+|
T Consensus        89 ---lWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~I  165 (315)
T KOG0279|consen   89 ---LWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPII  165 (315)
T ss_pred             ---EEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEE
Confidence               99996 68889999999999999999999999999998 999999887655544433  789999999997  6799


Q ss_pred             EEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc---cCCCCccceeEE
Q psy11524        222 AGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---LDKPDTGSVYDL  297 (323)
Q Consensus       222 ~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~  297 (323)
                      ++++.|+ +++||+++.+....  +.+|.+.++.+++||||    ..++.+..++...+|++...   -...|...|.++
T Consensus       166 vs~s~DktvKvWnl~~~~l~~~--~~gh~~~v~t~~vSpDG----slcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl  239 (315)
T KOG0279|consen  166 VSASWDKTVKVWNLRNCQLRTT--FIGHSGYVNTVTVSPDG----SLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSL  239 (315)
T ss_pred             EEccCCceEEEEccCCcchhhc--cccccccEEEEEECCCC----CEEecCCCCceEEEEEccCCceeEeccCCCeEeeE
Confidence            9999999 99999999998888  89999999999999999    67777777777777777664   122347899999


Q ss_pred             EEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        298 VWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       298 ~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      +|+|+.-.|+.+. +..|+||++..
T Consensus       240 ~fspnrywL~~at-~~sIkIwdl~~  263 (315)
T KOG0279|consen  240 CFSPNRYWLCAAT-ATSIKIWDLES  263 (315)
T ss_pred             EecCCceeEeecc-CCceEEEeccc
Confidence            9999977666655 44599999864

>KOG0293|consensus

Probab=100.00  E-value=1.3e-35  Score=234.15  Aligned_cols=274  Identities=17%  Similarity=0.208  Sum_probs=223.6

Q ss_pred             eeeeEeecccceeEeeEeccCCcceeeeeecccc-----------ccccceeeec-CCCCCEEEEEEcCCCCeEEEEeeC
Q psy11524         35 KNHLTIRRYDGTVINYPISPYISVLHSYAASHSW-----------PQALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAK  102 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~  102 (323)
                      +..+.+..|.+.|+-+.||++|+    |+|+++-           |...++.+++ .|..+|..+.||||.++|++|+.+
T Consensus       215 qt~qil~~htdEVWfl~FS~nGk----yLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~  290 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGK----YLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD  290 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCe----eEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence            34467889999999999999995    5555543           3445555555 499999999999999999999988


Q ss_pred             CeEEEEeCCCCc-e-eEee-ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCC-CceeEEEEecCC
Q psy11524        103 SLVIKPLSPNNK-A-TKWQ-AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHD-HPISSLAWAPGG  178 (323)
Q Consensus       103 ~~~v~~~~~~~~-~-~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~-~~v~~~~~~p~~  178 (323)
                      + .+++||..+. . ..+. ++...+.+++|.|||..+++|+.|+.+.   .||++++......+.. ..|.+++.++||
T Consensus       291 e-~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~---~wdlDgn~~~~W~gvr~~~v~dlait~Dg  366 (519)
T KOG0293|consen  291 E-VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII---MWDLDGNILGNWEGVRDPKVHDLAITYDG  366 (519)
T ss_pred             H-heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEE---EecCCcchhhcccccccceeEEEEEcCCC
Confidence            6 7999998876 2 2332 2457899999999999999999999999   9999998888777644 569999999999


Q ss_pred             CEEEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceE--E
Q psy11524        179 DMFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEIT--Q  254 (323)
Q Consensus       179 ~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~--~  254 (323)
                      +++++.+.| .|++++.....-.-......+|++.+.|.+|+++++.-.+. +++||++..+.+..  +.+|...-.  .
T Consensus       367 k~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k--Y~Ghkq~~fiIr  444 (519)
T KOG0293|consen  367 KYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK--YFGHKQGHFIIR  444 (519)
T ss_pred             cEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH--hhcccccceEEE
Confidence            999998888 99999987553332333567899999999999999999999 99999998888777  677765433  3


Q ss_pred             EEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCC-eeEeeecCCeEEEEEee
Q psy11524        255 LAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDAT-QIAGACANGSLLLGTII  321 (323)
Q Consensus       255 ~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~-~l~s~~~dg~i~~~~l~  321 (323)
                      -+|...   .+..|+.++.|+++++|+...+    +..+|...|++++|+|... .+|++++||+|+||..-
T Consensus       445 SCFgg~---~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  445 SCFGGG---NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             eccCCC---CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence            344332   2478999999999999998876    7788999999999999765 78899999999999864

>KOG0291|consensus

Probab=100.00  E-value=6.9e-34  Score=239.77  Aligned_cols=273  Identities=15%  Similarity=0.204  Sum_probs=232.3

Q ss_pred             eecccceeEeeEeccCCcceeeeeecccc---c-cccceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc
Q psy11524         40 IRRYDGTVINYPISPYISVLHSYAASHSW---P-QALSLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK  114 (323)
Q Consensus        40 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~  114 (323)
                      +......|.+..|++.-..++..+.+|..   . ....+.+.+. ...+|..++|+..|.+||.++..-|++.+|+-...
T Consensus       261 ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE  340 (893)
T KOG0291|consen  261 LNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE  340 (893)
T ss_pred             ecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence            44445789999999998888888877754   2 3344555565 45899999999999999999988777777665544


Q ss_pred             --eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEE
Q psy11524        115 --ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLR  190 (323)
Q Consensus       115 --~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~  190 (323)
                        +...++|...+.+++++|||+++|+|+.||+|+   |||.. +-+..++..|...|+.+.|+..|+.+++.+-| +|+
T Consensus       341 sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVK---vWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVR  417 (893)
T KOG0291|consen  341 SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVK---VWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVR  417 (893)
T ss_pred             ceeeeccccccceeeEEECCCCcEEEeccCCCcEE---EEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEE
Confidence              777889999999999999999999999999999   99995 77889999999999999999999999999996 999


Q ss_pred             EEeCCC-CeeeecC-CCCccEEEEEEcCCCCEEEEEecCc--EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccc
Q psy11524        191 LCDKVG-WSHSLDK-PDTGSVYDLVWSNDATQIAGACANV--IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQER  266 (323)
Q Consensus       191 i~d~~~-~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~  266 (323)
                      .||+.. ...+.+. +.+-...|++..|.|..+.+|+.|.  |.+|++.+|+.+..  +.+|.++|.+++|+|++    .
T Consensus       418 AwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi--LsGHEgPVs~l~f~~~~----~  491 (893)
T KOG0291|consen  418 AWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI--LSGHEGPVSGLSFSPDG----S  491 (893)
T ss_pred             eeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh--hcCCCCcceeeEEcccc----C
Confidence            999764 3444443 3445678999999999999999999  99999999999998  89999999999999999    7


Q ss_pred             eEEEEeCCCCeEEEecccc-----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        267 HVAFIDKNRDLYLSMWSHS-----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       267 ~l~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      .|+.++.|..+++|++-..     ... +...+.+++|+|||+.|++++-||.|.+|++.+
T Consensus       492 ~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~  551 (893)
T KOG0291|consen  492 LLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKE  551 (893)
T ss_pred             eEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence            9999999999999988553     122 257899999999999999999999999999754

>KOG0263|consensus

Probab=100.00  E-value=3.7e-35  Score=248.69  Aligned_cols=237  Identities=21%  Similarity=0.259  Sum_probs=205.1

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeeccc---cccc--------------------------------cceee-ecCCC
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASHS---WPQA--------------------------------LSLCR-TLNVS   81 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~--------------------------------~~~~~-~~~~~   81 (323)
                      .++..-...+.|..|++|+++++..+.+..   |.-+                                ....+ ..+|.
T Consensus       372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~  451 (707)
T KOG0263|consen  372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS  451 (707)
T ss_pred             EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence            344444567889999999987775554431   2111                                01112 23599


Q ss_pred             CCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCe
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQ  158 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~  158 (323)
                      ++|+.+.|+|+.++|+++++| ..+++|.+...  +..+.+|..+|+.+.|+|.|-++||++.|++.+   +|..+ ..+
T Consensus       452 GPVyg~sFsPd~rfLlScSED-~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tAr---LWs~d~~~P  527 (707)
T KOG0263|consen  452 GPVYGCSFSPDRRFLLSCSED-SSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTAR---LWSTDHNKP  527 (707)
T ss_pred             CceeeeeecccccceeeccCC-cceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceee---eeecccCCc
Confidence            999999999999999999888 59999998876  667889999999999999999999999999999   99996 788


Q ss_pred             eeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCC-CCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcC
Q psy11524        159 LYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKV-GWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDIS  235 (323)
Q Consensus       159 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~  235 (323)
                      ++.+.+|-..|.|+.|+|+..++++|+.| ++++||.. +..++.+.+|.++|.+++|||+|++|++|+.|+ |.+||+.
T Consensus       528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~  607 (707)
T KOG0263|consen  528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA  607 (707)
T ss_pred             hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence            89999999999999999999999999998 99999965 678889999999999999999999999999999 9999999


Q ss_pred             CCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        236 SSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       236 ~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      +++.+..  +.+|.+.|.++.|+.+|    +.++++..+..+.+|++..
T Consensus       608 ~~~~v~~--l~~Ht~ti~SlsFS~dg----~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  608 NGSLVKQ--LKGHTGTIYSLSFSRDG----NVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             CCcchhh--hhcccCceeEEEEecCC----CEEEecCCCCeEEEEEchh
Confidence            9999998  89999999999999999    7888888888888888765

>KOG0286|consensus

Probab=100.00  E-value=7.2e-34  Score=214.97  Aligned_cols=235  Identities=16%  Similarity=0.189  Sum_probs=205.5

Q ss_pred             eecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCC--ceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEE
Q psy11524         76 RTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN--KATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVW  152 (323)
Q Consensus        76 ~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~  152 (323)
                      ++|+ |...|.++.|++|.++|++++.| |.+.+||.-+  +.+.++-....|..++|+|.|+++|.|+-|+...   ||
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqD-GklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs---iy  124 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQD-GKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS---IY  124 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccC-CeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeE---EE
Confidence            5554 99999999999999999999877 6999999754  3677777888999999999999999999999999   99


Q ss_pred             eCCC-------CeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCC-CCeeeecCCCCccEEEEEEcC-CCCEEE
Q psy11524        153 DTDG-------RQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKV-GWSHSLDKPDTGSVYDLVWSN-DATQIA  222 (323)
Q Consensus       153 d~~~-------~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~  222 (323)
                      ++..       +..+.+.+|.+.+.++.|-+|+ .|++++.| ++.+||++ ++....+.+|.+.|.+++++| +++.++
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFv  203 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFV  203 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEE
Confidence            9952       2345688999999999998865 57777777 99999987 567778999999999999999 999999


Q ss_pred             EEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCC--CCcccee
Q psy11524        223 GACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDK--PDTGSVY  295 (323)
Q Consensus       223 ~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~--~~~~~v~  295 (323)
                      +|+-|+ .+|||++.+..+++  +.+|...|+++.|.|+|    ..++.++.++..++++++..    ++.  .-..+|+
T Consensus       204 Sg~cD~~aklWD~R~~~c~qt--F~ghesDINsv~ffP~G----~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~git  277 (343)
T KOG0286|consen  204 SGGCDKSAKLWDVRSGQCVQT--FEGHESDINSVRFFPSG----DAFATGSDDATCRLYDLRADQELAVYSHDSIICGIT  277 (343)
T ss_pred             ecccccceeeeeccCcceeEe--ecccccccceEEEccCC----CeeeecCCCceeEEEeecCCcEEeeeccCcccCCce
Confidence            999999 99999999999999  89999999999999999    77888888888888888763    221  1246899


Q ss_pred             EEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        296 DLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       296 ~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +++||..|++|++|..|.++.+||.+
T Consensus       278 Sv~FS~SGRlLfagy~d~~c~vWDtl  303 (343)
T KOG0286|consen  278 SVAFSKSGRLLFAGYDDFTCNVWDTL  303 (343)
T ss_pred             eEEEcccccEEEeeecCCceeEeecc
Confidence            99999999999999999999999975

>KOG0265|consensus

Probab=100.00  E-value=3.9e-34  Score=217.10  Aligned_cols=268  Identities=15%  Similarity=0.215  Sum_probs=221.9

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeeccccccccceeeecC----------CCCCEEEEEEcCCCCeEEEEeeCCeEEE
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLN----------VSPPVYSAAWSPDSNKVLLTQAKSLVIK  107 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~sp~~~~l~~~~~~~~~v~  107 (323)
                      ..+.+|.+.|+.+.|+|+|    +++++|+.|+.+-+|+..+          |.+.|..+.|.+|+..+++++.|. .++
T Consensus        41 m~l~gh~geI~~~~F~P~g----s~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk-~v~  115 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDG----SCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDK-TVR  115 (338)
T ss_pred             hhcCCCcceEEEEEECCCC----CeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCc-eEE
Confidence            5678999999999999999    8999999999888887653          899999999999999999998885 999


Q ss_pred             EeCCCCc--eeEeeccCCCeEEEEECCCC-CEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEE
Q psy11524        108 PLSPNNK--ATKWQAHDGLILKVAWCSST-DLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVG  184 (323)
Q Consensus       108 ~~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  184 (323)
                      .||..++  .+.++.|..-|+++.-+.-| .++.+++.|++++   +||++.+...+....+.+++++.|..++..+.+|
T Consensus       116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~k---l~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sg  192 (338)
T KOG0265|consen  116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLK---LWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISG  192 (338)
T ss_pred             EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEE---EEeecccchhhccccceeEEEEEecccccceeec
Confidence            9998876  67788999999988744334 4678889999999   9999877766666678889999999999999999


Q ss_pred             eCC-eEEEEeCC-CCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCC----ceeeeecCCCC--c--cceE
Q psy11524        185 SYN-TLRLCDKV-GWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSS----SSSNVTAPLSH--S--HEIT  253 (323)
Q Consensus       185 ~~~-~i~i~d~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~----~~~~~~~~~~~--~--~~v~  253 (323)
                      +-| .|++||++ +.....+.+|.+.|+.+..+|+|.++.+-+-|. +++||++-.    +++..  +.++  .  ....
T Consensus       193 gIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~i--f~g~~hnfeknlL  270 (338)
T KOG0265|consen  193 GIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKI--FQGHIHNFEKNLL  270 (338)
T ss_pred             cccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEE--eecchhhhhhhcc
Confidence            986 99999987 456678899999999999999999999999999 999998743    33444  3443  2  2345


Q ss_pred             EEEEccCCC-----CccceEEEEeCCCCeEEEecccccCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        254 QLAVNQTGS-----LQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       254 ~~~~~p~g~-----~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      ..+|+|++.     +.|+.+.+|+....-.++     ..++|.+.|++++|+|...+|.+++.|.+|++-+|
T Consensus       271 ~cswsp~~~~i~ags~dr~vyvwd~~~r~~ly-----klpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei  337 (338)
T KOG0265|consen  271 KCSWSPNGTKITAGSADRFVYVWDTTSRRILY-----KLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI  337 (338)
T ss_pred             eeeccCCCCccccccccceEEEeecccccEEE-----EcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence            678999984     444455555544444444     44559999999999999999999999999998765

>KOG0318|consensus

Probab=100.00  E-value=1.6e-33  Score=228.70  Aligned_cols=277  Identities=18%  Similarity=0.245  Sum_probs=223.1

Q ss_pred             eeeeEeecccceeEeeEeccCCcceeeeeecc---ccc-cccceeeecC----CCCCEEEEEEcCCCCeEEEEeeCCeEE
Q psy11524         35 KNHLTIRRYDGTVINYPISPYISVLHSYAASH---SWP-QALSLCRTLN----VSPPVYSAAWSPDSNKVLLTQAKSLVI  106 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~~~~~v  106 (323)
                      +-..+++.|...|.++.|+|||+..++...++   .+| ++++....++    |.+.|.+++|+||++.+++++.+. .+
T Consensus       181 KFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk-t~  259 (603)
T KOG0318|consen  181 KFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK-TI  259 (603)
T ss_pred             eeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc-eE
Confidence            44567889999999999999997666655555   355 4555666664    999999999999999999999885 99


Q ss_pred             EEeCCCCc---------------------------------------------eeEeeccCCCeEEEEECCCCCEEEEEc
Q psy11524        107 KPLSPNNK---------------------------------------------ATKWQAHDGLILKVAWCSSTDLILSGG  141 (323)
Q Consensus       107 ~~~~~~~~---------------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~  141 (323)
                      ++||....                                             +..+.+|...|+++..+||+++|++|+
T Consensus       260 KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgs  339 (603)
T KOG0318|consen  260 KIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGS  339 (603)
T ss_pred             EEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeec
Confidence            99985421                                             124467889999999999999999999


Q ss_pred             CCCceEeeeEEeCC-CC-----------eeeEee----------------------------------------------
Q psy11524        142 EDCKYKASFVWDTD-GR-----------QLYSSL----------------------------------------------  163 (323)
Q Consensus       142 ~d~~i~~i~v~d~~-~~-----------~~~~~~----------------------------------------------  163 (323)
                      .||.|.   -|+.. +.           .+..+.                                              
T Consensus       340 yDG~I~---~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d  416 (603)
T KOG0318|consen  340 YDGHIN---SWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD  416 (603)
T ss_pred             cCceEE---EEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence            999999   88872 10           000000                                              


Q ss_pred             ------------------------cCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC---eeeecCCCCccEEEEEEc
Q psy11524        164 ------------------------THDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW---SHSLDKPDTGSVYDLVWS  215 (323)
Q Consensus       164 ------------------------~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~---~~~~~~~~~~~v~~~~~~  215 (323)
                                              .......+++++|++..+++|+.| .+++|.+.+.   +......|.+.++++++|
T Consensus       417 ~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS  496 (603)
T KOG0318|consen  417 GGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS  496 (603)
T ss_pred             CCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEEC
Confidence                                    001124678899999999999997 9999998864   233566799999999999


Q ss_pred             CCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----cCCC
Q psy11524        216 NDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----LDKP  289 (323)
Q Consensus       216 ~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----~~~~  289 (323)
                      ||+.+|+++...+ +.+||+.+.+.... ...-|...|.+++|+|+.    ..++.++.|..+.+|+++..     +...
T Consensus       497 pd~~yla~~Da~rkvv~yd~~s~~~~~~-~w~FHtakI~~~aWsP~n----~~vATGSlDt~Viiysv~kP~~~i~iknA  571 (603)
T KOG0318|consen  497 PDGAYLAAGDASRKVVLYDVASREVKTN-RWAFHTAKINCVAWSPNN----KLVATGSLDTNVIIYSVKKPAKHIIIKNA  571 (603)
T ss_pred             CCCcEEEEeccCCcEEEEEcccCceecc-eeeeeeeeEEEEEeCCCc----eEEEeccccceEEEEEccChhhheEeccc
Confidence            9999999999999 99999998887433 244589999999999998    89999999999999999886     4455


Q ss_pred             CccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        290 DTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       290 ~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      |...|+.+.|-.+ ..|++.+.|-.|++|++.
T Consensus       572 H~~gVn~v~wlde-~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  572 HLGGVNSVAWLDE-STVVSSGQDANIKVWNVT  602 (603)
T ss_pred             cccCceeEEEecC-ceEEeccCcceeEEeccc
Confidence            7777999999755 589999999999999874

>KOG0291|consensus

Probab=100.00  E-value=1e-33  Score=238.67  Aligned_cols=273  Identities=16%  Similarity=0.231  Sum_probs=222.3

Q ss_pred             eecccceeEeeEeccCCcceeeeeec----ccc--ccccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCC
Q psy11524         40 IRRYDGTVINYPISPYISVLHSYAAS----HSW--PQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN  113 (323)
Q Consensus        40 ~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~  113 (323)
                      +.--+.+|..+.|+..|..++.....    ..|  ....-+.+...|...+++++++|||+++|+|++| +.|++||...
T Consensus       303 LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eD-gKVKvWn~~S  381 (893)
T KOG0291|consen  303 LSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAED-GKVKVWNTQS  381 (893)
T ss_pred             eecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCC-CcEEEEeccC
Confidence            33345667778888888655533222    123  3444455666799999999999999999999877 6999999988


Q ss_pred             c--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecC-CCceeEEEEecCCCEEEEEeCC--
Q psy11524        114 K--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTH-DHPISSLAWAPGGDMFAVGSYN--  187 (323)
Q Consensus       114 ~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~~~~--  187 (323)
                      .  ..++..|...|+.+.|+..|+.+++.+-||+|+   .||+. .+..++++.. +....+++..|.|..+.+|+.|  
T Consensus       382 gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVR---AwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F  458 (893)
T KOG0291|consen  382 GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVR---AWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSF  458 (893)
T ss_pred             ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEE---eeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceE
Confidence            5  789999999999999999999999999999999   99994 6666666543 3457789999999999888886  


Q ss_pred             eEEEEeCC-CCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCc-eeeeecCCCCccceEEEEEccCCCCc
Q psy11524        188 TLRLCDKV-GWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSS-SSNVTAPLSHSHEITQLAVNQTGSLQ  264 (323)
Q Consensus       188 ~i~i~d~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~p~g~~~  264 (323)
                      .|++|++. ++.+..+.+|.++|.+++|+|+|..|++++.|. |++||+-... .+.+   ..+...+..++|+|+|   
T Consensus       459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEt---l~i~sdvl~vsfrPdG---  532 (893)
T KOG0291|consen  459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVET---LEIRSDVLAVSFRPDG---  532 (893)
T ss_pred             EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeee---EeeccceeEEEEcCCC---
Confidence            89999987 567779999999999999999999999999999 9999986543 3333   4566789999999999   


Q ss_pred             cceEEEEeCCCCeEEEecccc-----------cCC-------------CCccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        265 ERHVAFIDKNRDLYLSMWSHS-----------LDK-------------PDTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       265 d~~l~~~~~~~~~~~~~~~~~-----------~~~-------------~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                       ..|++...+|.+.+|+....           +..             ......+.+++|+||..+++|+....|++|++
T Consensus       533 -~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v  611 (893)
T KOG0291|consen  533 -KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDV  611 (893)
T ss_pred             -CeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence             88999999999999887654           000             11356899999999999999999999999998


Q ss_pred             ecC
Q psy11524        321 IQR  323 (323)
Q Consensus       321 ~~~  323 (323)
                      .++
T Consensus       612 ~~~  614 (893)
T KOG0291|consen  612 PEG  614 (893)
T ss_pred             chh
Confidence            653

>KOG0273|consensus

Probab=100.00  E-value=6.5e-34  Score=227.95  Aligned_cols=265  Identities=18%  Similarity=0.302  Sum_probs=227.6

Q ss_pred             ceeEeeEeccCCcceeeeeecc---ccccccceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEe
Q psy11524         45 GTVINYPISPYISVLHSYAASH---SWPQALSLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKW  118 (323)
Q Consensus        45 ~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~  118 (323)
                      ..|++++|+.+|..|+....+|   .|+..+.+..++. |.++|.++.|+.+|.||++++-| +++.+||....  .+.+
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD-~ttilwd~~~g~~~q~f  314 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVD-GTTILWDAHTGTVKQQF  314 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCC-ccEEEEeccCceEEEee
Confidence            5689999999995555444443   3555555555664 99999999999999999999877 59999998655  5667


Q ss_pred             eccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCC-
Q psy11524        119 QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKV-  195 (323)
Q Consensus       119 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~-  195 (323)
                      .-|..+-.++.|-.+ ..+++++.|+.|+   |+.+. ..+..++.+|.++|.++.|+|.|.+|+++++| +++||... 
T Consensus       315 ~~~s~~~lDVdW~~~-~~F~ts~td~~i~---V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~  390 (524)
T KOG0273|consen  315 EFHSAPALDVDWQSN-DEFATSSTDGCIH---VCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ  390 (524)
T ss_pred             eeccCCccceEEecC-ceEeecCCCceEE---EEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence            778887778899754 5688999999999   99995 77889999999999999999999999999997 99999965 


Q ss_pred             CCeeeecCCCCccEEEEEEcCCC---------CEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCcc
Q psy11524        196 GWSHSLDKPDTGSVYDLVWSNDA---------TQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQE  265 (323)
Q Consensus       196 ~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d  265 (323)
                      +.....+..|...|..+.|+|+|         ..+++++.|+ |++||+..+.++.+  +..|..+|.+++|+|+|    
T Consensus       391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~--f~kH~~pVysvafS~~g----  464 (524)
T KOG0273|consen  391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT--LMKHQEPVYSVAFSPNG----  464 (524)
T ss_pred             CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe--eccCCCceEEEEecCCC----
Confidence            55667788899999999999965         3689999999 99999999999999  88999999999999999    


Q ss_pred             ceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        266 RHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       266 ~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      .+++.++.++.+.+|..+..    ..+. .+.|..++|+.+|..|..+-.|+.+++-++.
T Consensus       465 ~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  465 RYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             cEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            99999999999999999876    2233 5779999999999999999999999998874

>KOG0266|consensus

Probab=100.00  E-value=1.8e-33  Score=242.57  Aligned_cols=271  Identities=21%  Similarity=0.269  Sum_probs=225.1

Q ss_pred             eeEeecc-cceeEeeEeccCCcceeeeeeccccccccceee----------ec-CCCCCEEEEEEcCCCCeEEEEeeCCe
Q psy11524         37 HLTIRRY-DGTVINYPISPYISVLHSYAASHSWPQALSLCR----------TL-NVSPPVYSAAWSPDSNKVLLTQAKSL  104 (323)
Q Consensus        37 ~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~v~~~~~sp~~~~l~~~~~~~~  104 (323)
                      ...+.+| ...|.++.|+|+|..    ++.+++++..+++.          .+ +|...|.+++|+|+++++++++.| .
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~----l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D-~  225 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRA----LAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDD-K  225 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCe----EEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCC-c
Confidence            3444444 788999999999954    44444444333332          22 489999999999999999988777 5


Q ss_pred             EEEEeCCCCc---eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCE
Q psy11524        105 VIKPLSPNNK---ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDM  180 (323)
Q Consensus       105 ~v~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~  180 (323)
                      .+++||....   ++++.+|...|++++|+|+|+++++|+.|++|+   +||++ +++...+.+|...|++++|++++++
T Consensus       226 tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvr---iWd~~~~~~~~~l~~hs~~is~~~f~~d~~~  302 (456)
T KOG0266|consen  226 TLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVR---IWDVRTGECVRKLKGHSDGISGLAFSPDGNL  302 (456)
T ss_pred             eEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEE---EEeccCCeEEEeeeccCCceEEEEECCCCCE
Confidence            9999999333   788899999999999999999999999999999   99997 6888999999999999999999999


Q ss_pred             EEEEeCC-eEEEEeCCCCe---eeecCCCCc--cEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccc--
Q psy11524        181 FAVGSYN-TLRLCDKVGWS---HSLDKPDTG--SVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHE--  251 (323)
Q Consensus       181 l~~~~~~-~i~i~d~~~~~---~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~--  251 (323)
                      |++++.| .|++||+.+..   ...+..+..  +++++.|+|+++++++++.|+ +++||+..+..+..  ..+|...  
T Consensus       303 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~--~~~~~~~~~  380 (456)
T KOG0266|consen  303 LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT--YTGHSNLVR  380 (456)
T ss_pred             EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee--ecccCCcce
Confidence            9999886 99999988655   334444444  599999999999999999999 99999999988887  5666553  


Q ss_pred             -eEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCC-ccceeEEEEeeCCCeeEeee--cCCeEEEEEee
Q psy11524        252 -ITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPD-TGSVYDLVWSSDATQIAGAC--ANGSLLLGTII  321 (323)
Q Consensus       252 -v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~-~~~v~~~~~s~~g~~l~s~~--~dg~i~~~~l~  321 (323)
                       +.+...++.+    ..+.++..++.+++|+....    ...+| ...+..++|+|..+++++++  .|+.+++|+..
T Consensus       381 ~~~~~~~~~~~----~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  381 CIFSPTLSTGG----KLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             eEecccccCCC----CeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence             3344556666    89999999999999999865    55667 78899999999999999988  79999999753

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=8.9e-33  Score=226.15  Aligned_cols=272  Identities=22%  Similarity=0.314  Sum_probs=224.1

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeecc---cccc-ccceeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCC
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASH---SWPQ-ALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPN  112 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~  112 (323)
                      .++++|.++|.++.|+|++..++....++   .|+. +.+....+ .|...+..+.|+|+++++++++.+ +.+++|+..
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~~i~i~~~~   81 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD-KTIRLWDLE   81 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCC-CeEEEEEcC
Confidence            34678999999999999986554433332   2331 11122222 378889999999999999988766 699999988


Q ss_pred             Cc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeC-Ce
Q psy11524        113 NK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NT  188 (323)
Q Consensus       113 ~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~  188 (323)
                      ..  ...+..|...+.++.|+|+++++++++.++.+.   +||+. ++....+..|...+.+++|+|++.++++++. +.
T Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  158 (289)
T cd00200          82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIK---VWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT  158 (289)
T ss_pred             cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEE---EEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence            73  667788888999999999988999888899999   99997 6677777778889999999999988888885 59


Q ss_pred             EEEEeCC-CCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccc
Q psy11524        189 LRLCDKV-GWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQER  266 (323)
Q Consensus       189 i~i~d~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~  266 (323)
                      +++||++ ......+..|...+.+++|+|+++.+++++.++ +++||++.++.+..  +..+...+.+++|+|++    .
T Consensus       159 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~----~  232 (289)
T cd00200         159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT--LRGHENGVNSVAFSPDG----Y  232 (289)
T ss_pred             EEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecc--hhhcCCceEEEEEcCCC----c
Confidence            9999987 445556667888999999999999999999999 99999999888877  56788899999999987    6


Q ss_pred             eEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        267 HVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       267 ~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      .+..++.++.+.+|++...    ....|...+.+++|+|++++|++++.||.|++|+
T Consensus       233 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         233 LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            7777777888999988753    3446778999999999999999999999999995

>KOG0284|consensus

Probab=100.00  E-value=7.6e-35  Score=229.41  Aligned_cols=232  Identities=18%  Similarity=0.258  Sum_probs=206.8

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGR  157 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~  157 (323)
                      ..-+|..+.|.|+|+.|++|+.. |.+.+|+...-  ...+++|..+|.++.|+++|.++++|+.+|.|+   +|+..-.
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~S-GEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iK---yWqpnmn  170 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQS-GEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIK---YWQPNMN  170 (464)
T ss_pred             cccceeeEEEcCCCceeEeeccc-ccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEE---ecccchh
Confidence            35689999999999999998766 79999987544  344678999999999999999999999999999   9999877


Q ss_pred             eeeEeecCC-CceeEEEEecCCCEEEEEeCC-eEEEEeCC-CCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEE
Q psy11524        158 QLYSSLTHD-HPISSLAWAPGGDMFAVGSYN-TLRLCDKV-GWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFD  233 (323)
Q Consensus       158 ~~~~~~~~~-~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd  233 (323)
                      .+..+..|. ..|++++|+|+...|+++++| +|+|||.. ..+..++.+|.-.|.+++|+|....|++++.|. |++||
T Consensus       171 nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD  250 (464)
T KOG0284|consen  171 NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD  250 (464)
T ss_pred             hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence            776666655 899999999999999999996 99999966 445567789999999999999988999999999 99999


Q ss_pred             cCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCC-CeeEe
Q psy11524        234 ISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDA-TQIAG  308 (323)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g-~~l~s  308 (323)
                      .++++++.+  +..|...|..+.|+|++    +.|...+.|..+.++++...    ..++|...|++++|+|-. .+|++
T Consensus       251 prSg~cl~t--lh~HKntVl~~~f~~n~----N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lfts  324 (464)
T KOG0284|consen  251 PRSGSCLAT--LHGHKNTVLAVKFNPNG----NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTS  324 (464)
T ss_pred             CCCcchhhh--hhhccceEEEEEEcCCC----CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceee
Confidence            999999999  89999999999999999    89999999999999998843    677899999999999975 47889


Q ss_pred             eecCCeEEEEEee
Q psy11524        309 ACANGSLLLGTII  321 (323)
Q Consensus       309 ~~~dg~i~~~~l~  321 (323)
                      |+.||.|..|.+.
T Consensus       325 gg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  325 GGSDGSVVHWVVG  337 (464)
T ss_pred             ccCCCceEEEecc
Confidence            9999999999864

>KOG0645|consensus

Probab=100.00  E-value=5.7e-32  Score=202.66  Aligned_cols=231  Identities=15%  Similarity=0.259  Sum_probs=202.3

Q ss_pred             CCCCCEEEEEEcCC-CCeEEEEeeCCeEEEEeCCCCc----eeE-e-eccCCCeEEEEECCCCCEEEEEcCCCceEeeeE
Q psy11524         79 NVSPPVYSAAWSPD-SNKVLLTQAKSLVIKPLSPNNK----ATK-W-QAHDGLILKVAWCSSTDLILSGGEDCKYKASFV  151 (323)
Q Consensus        79 ~~~~~v~~~~~sp~-~~~l~~~~~~~~~v~~~~~~~~----~~~-~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v  151 (323)
                      .|.+.+..++|+|- |..||+++.++ .|++|+....    .++ + .+|+..|++++|+|.|++|++++.|.++.   |
T Consensus        12 gh~~r~W~~awhp~~g~ilAscg~Dk-~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~---I   87 (312)
T KOG0645|consen   12 GHKDRVWSVAWHPGKGVILASCGTDK-AVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV---I   87 (312)
T ss_pred             CCCCcEEEEEeccCCceEEEeecCCc-eEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE---E
Confidence            48889999999998 88899988885 9999998842    221 1 46999999999999999999999999999   9


Q ss_pred             EeCC---CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCC-C---eeeecCCCCccEEEEEEcCCCCEEEE
Q psy11524        152 WDTD---GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVG-W---SHSLDKPDTGSVYDLVWSNDATQIAG  223 (323)
Q Consensus       152 ~d~~---~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~-~---~~~~~~~~~~~v~~~~~~~~~~~l~~  223 (323)
                      |.-.   -+++..+++|+..|.+++|+++|++||+++.| .+-||.+.. .   ....+.+|...|..+.|+|...+|++
T Consensus        88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S  167 (312)
T KOG0645|consen   88 WKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFS  167 (312)
T ss_pred             eecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEE
Confidence            9873   56788899999999999999999999999998 999999762 2   55688999999999999999999999


Q ss_pred             EecCc-EEEEEcC-C--CceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccccCCCCccceeEEEE
Q psy11524        224 ACANV-IHIFDIS-S--SSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVW  299 (323)
Q Consensus       224 ~~~d~-i~iwd~~-~--~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  299 (323)
                      ++.|+ |++|+-. .  .++.++  +.+|...|.+++|+|.|    ..+...+.++.+.+|.....+...|...++.++|
T Consensus       168 ~SYDnTIk~~~~~~dddW~c~~t--l~g~~~TVW~~~F~~~G----~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W  241 (312)
T KOG0645|consen  168 CSYDNTIKVYRDEDDDDWECVQT--LDGHENTVWSLAFDNIG----SRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPW  241 (312)
T ss_pred             eccCCeEEEEeecCCCCeeEEEE--ecCccceEEEEEecCCC----ceEEEecCCcceEeeeeccCcchhcccceEeeee
Confidence            99999 9999866 2  345666  78999999999999999    8999999999999999766566678899999999


Q ss_pred             eeCCCeeEeeecCCeEEEEEee
Q psy11524        300 SSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       300 s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      .  ...|++++.|+.|++|...
T Consensus       242 ~--~~~IaS~ggD~~i~lf~~s  261 (312)
T KOG0645|consen  242 D--NGVIASGGGDDAIRLFKES  261 (312)
T ss_pred             c--ccceEeccCCCEEEEEEec
Confidence            8  4589999999999999753

>KOG0295|consensus

Probab=100.00  E-value=3e-33  Score=217.47  Aligned_cols=271  Identities=14%  Similarity=0.152  Sum_probs=235.5

Q ss_pred             eeeEeecccceeEeeEeccCCcceeeeeeccccccccce--------eeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEE
Q psy11524         36 NHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSL--------CRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVI  106 (323)
Q Consensus        36 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v  106 (323)
                      ..+.+.+|..+|..+-|.|+-.    ..++++.|.++++        .+.++ |.+.+..++|+..|+++++++.|- .+
T Consensus       100 l~~~l~g~r~~vt~v~~hp~~~----~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl-~~  174 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFHPSEA----LVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDL-SA  174 (406)
T ss_pred             chhhhhccccceeeeeeccCce----EEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCcc-ch
Confidence            3456778999999999999873    3444444444444        34443 899999999999999999998884 69


Q ss_pred             EEeCCCCc---eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEE
Q psy11524        107 KPLSPNNK---ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFA  182 (323)
Q Consensus       107 ~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~  182 (323)
                      ++||..+.   .+.+.+|...|.++.|-|.|.++++++.|.+|+   .|++. +-++.++.+|..-|..++.+.||.+++
T Consensus       175 ~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik---~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~A  251 (406)
T KOG0295|consen  175 KLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIK---AWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIA  251 (406)
T ss_pred             hheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeeccccccee---EEecccceeEEeccCchHhEEEEEecCCeeEEE
Confidence            99998774   667889999999999999999999999999999   99995 888999999999999999999999999


Q ss_pred             EEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcCC----------C-----CEEEEEecCc-EEEEEcCCCceeeeec
Q psy11524        183 VGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSND----------A-----TQIAGACANV-IHIFDISSSSSSNVTA  244 (323)
Q Consensus       183 ~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~----------~-----~~l~~~~~d~-i~iwd~~~~~~~~~~~  244 (323)
                      +++.+ ++++|-+.++ +...+..|+-+|.+++|.|.          |     .++.+++.|+ |++||+.++.++.+  
T Consensus       252 s~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t--  329 (406)
T KOG0295|consen  252 SCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT--  329 (406)
T ss_pred             ecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE--
Confidence            99997 9999998754 55677889999999999763          2     4899999999 99999999999999  


Q ss_pred             CCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        245 PLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       245 ~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      +.+|...|+.++|+|.|    ++|...-.|+.+.+|+++..    ....|..-|++++|+.+..++++|+-|.++++|+-
T Consensus       330 L~ghdnwVr~~af~p~G----kyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  330 LVGHDNWVRGVAFSPGG----KYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EecccceeeeeEEcCCC----eEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            89999999999999999    89999988999999998876    55578899999999999999999999999999973

>KOG0295|consensus

Probab=100.00  E-value=8.5e-34  Score=220.48  Aligned_cols=241  Identities=16%  Similarity=0.187  Sum_probs=213.7

Q ss_pred             ecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC
Q psy11524         77 TLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT  154 (323)
Q Consensus        77 ~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~  154 (323)
                      ..+|..+|+.+-|+|+-..+++++++ ..|++||..++  ...+.+|...+.+++|+..|+++++++.|-.++   +||.
T Consensus       104 l~g~r~~vt~v~~hp~~~~v~~as~d-~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~---LWd~  179 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHPSEALVVSASED-ATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAK---LWDF  179 (406)
T ss_pred             hhccccceeeeeeccCceEEEEecCC-ceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchh---heeH
Confidence            33589999999999999888887666 69999999877  677899999999999999999999999999999   9999


Q ss_pred             C--CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCC-CCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-E
Q psy11524        155 D--GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKV-GWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-I  229 (323)
Q Consensus       155 ~--~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i  229 (323)
                      +  .++++.+.+|+..|.++.|-|.|.++++++.| +|+.|++. +.++.++.+|...|..+..+.||..+++++.|. +
T Consensus       180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl  259 (406)
T KOG0295|consen  180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTL  259 (406)
T ss_pred             HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceE
Confidence            6  46777888999999999999999999999998 99999987 568889999999999999999999999999999 9


Q ss_pred             EEEEcCCCceeeeecCCCCccceEEEEEccCCC-----------CccceEEEEeCCCCeEEEecccc----cCCCCccce
Q psy11524        230 HIFDISSSSSSNVTAPLSHSHEITQLAVNQTGS-----------LQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSV  294 (323)
Q Consensus       230 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~-----------~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v  294 (323)
                      ++|-+.++++...  +.+|..+|.+++|.|...           .....+...+.|+.+++|++..+    +..+|...|
T Consensus       260 ~vW~~~t~~~k~~--lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwV  337 (406)
T KOG0295|consen  260 RVWVVATKQCKAE--LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWV  337 (406)
T ss_pred             EEEEeccchhhhh--hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccccee
Confidence            9999999988887  789999999999988754           11246666777777777777776    556799999


Q ss_pred             eEEEEeeCCCeeEeeecCCeEEEEEeecC
Q psy11524        295 YDLVWSSDATQIAGACANGSLLLGTIIQR  323 (323)
Q Consensus       295 ~~~~~s~~g~~l~s~~~dg~i~~~~l~~~  323 (323)
                      ..++|+|.|++|+++.+|+++++|++..+
T Consensus       338 r~~af~p~Gkyi~ScaDDktlrvwdl~~~  366 (406)
T KOG0295|consen  338 RGVAFSPGGKYILSCADDKTLRVWDLKNL  366 (406)
T ss_pred             eeeEEcCCCeEEEEEecCCcEEEEEeccc
Confidence            99999999999999999999999998653

>KOG0285|consensus

Probab=100.00  E-value=8.8e-33  Score=214.60  Aligned_cols=279  Identities=18%  Similarity=0.197  Sum_probs=239.5

Q ss_pred             cchhcceeeeeeEeecccceeEeeEeccCCcceeeeeecccccccccee--------eecC-CCCCEEEEEEcCCCCeEE
Q psy11524         27 YPEVLRFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLC--------RTLN-VSPPVYSAAWSPDSNKVL   97 (323)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~v~~~~~sp~~~~l~   97 (323)
                      .|+.+.-.+....+.+|.+-|.++++.|-.    .++++|+.|.++++|        -++. |-..|..+++|+--.|++
T Consensus       134 rPeWHapwKl~rVi~gHlgWVr~vavdP~n----~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlF  209 (460)
T KOG0285|consen  134 RPEWHAPWKLYRVISGHLGWVRSVAVDPGN----EWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLF  209 (460)
T ss_pred             CccccCcceehhhhhhccceEEEEeeCCCc----eeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEE
Confidence            344444445567789999999999999987    667777666555554        3444 889999999999999999


Q ss_pred             EEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEE
Q psy11524         98 LTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAW  174 (323)
Q Consensus        98 ~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~  174 (323)
                      +++.+ +.|+-||+...  ++.+.+|-..|.+++.+|.-..|++|+.|.+++   +||++ ...+..+.+|..+|.++.+
T Consensus       210 s~ged-k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~R---vWDiRtr~~V~~l~GH~~~V~~V~~  285 (460)
T KOG0285|consen  210 SAGED-KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIR---VWDIRTRASVHVLSGHTNPVASVMC  285 (460)
T ss_pred             EecCC-CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEE---EeeecccceEEEecCCCCcceeEEe
Confidence            99888 59999999876  788999999999999999999999999999999   99996 6678889999999999999


Q ss_pred             ecCCCEEEEEeCC-eEEEEeCC-CCeeeecCCCCccEEEEEEcCCCCEEEEEecCcEEEEEcCCCceeeeecCCCCccce
Q psy11524        175 APGGDMFAVGSYN-TLRLCDKV-GWSHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISSSSSSNVTAPLSHSHEI  252 (323)
Q Consensus       175 ~p~~~~l~~~~~~-~i~i~d~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~v  252 (323)
                      .|-...+++|+.| +|++||++ ++.......|...+++++.+|....+++++.|.|+-|++..|+.+..  +.+|...+
T Consensus       286 ~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~n--lsgh~~ii  363 (460)
T KOG0285|consen  286 QPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQN--LSGHNAII  363 (460)
T ss_pred             ecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhc--ccccccee
Confidence            9977789999997 99999987 56666777899999999999999999999999999999999999988  89999999


Q ss_pred             EEEEEccCCCCccceEEEEeCCCCeEEEecccc---------cCCC---CccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        253 TQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---------LDKP---DTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       253 ~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---------~~~~---~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      .+++.+.|+     .+..+..+|.+.+|+.+.+         +..+   .+..|.+.+|...|..|++|..|.+|++|+-
T Consensus       364 ntl~~nsD~-----v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke  438 (460)
T KOG0285|consen  364 NTLSVNSDG-----VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE  438 (460)
T ss_pred             eeeeeccCc-----eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence            999998884     7778888888888888775         1111   1457899999999999999999999999974

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.3e-31  Score=247.25  Aligned_cols=266  Identities=12%  Similarity=0.224  Sum_probs=214.9

Q ss_pred             eecccceeEeeEeccCCcceeeeeeccccccccceeee----------------cCCCCCEEEEEEcCC-CCeEEEEeeC
Q psy11524         40 IRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRT----------------LNVSPPVYSAAWSPD-SNKVLLTQAK  102 (323)
Q Consensus        40 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~v~~~~~sp~-~~~l~~~~~~  102 (323)
                      +..|.+.|.++.|+|++.    ++++++.|+..++|..                +.+...+.+++|+|. +.+|++++.+
T Consensus       479 ~~~~~~~V~~i~fs~dg~----~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~D  554 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGE----FFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFE  554 (793)
T ss_pred             ccCCCCcEEEEEECCCCC----EEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCC
Confidence            445899999999999994    5555555555555531                224567899999875 6778877666


Q ss_pred             CeEEEEeCCCCc--eeEeeccCCCeEEEEECC-CCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEec-C
Q psy11524        103 SLVIKPLSPNNK--ATKWQAHDGLILKVAWCS-STDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAP-G  177 (323)
Q Consensus       103 ~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p-~  177 (323)
                       +.|++||....  ...+..|.+.|.+++|+| ++.+|++++.|++|+   +||++ +..+..+.. ...+.++.|++ +
T Consensus       555 -g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~---iWd~~~~~~~~~~~~-~~~v~~v~~~~~~  629 (793)
T PLN00181        555 -GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVK---LWSINQGVSIGTIKT-KANICCVQFPSES  629 (793)
T ss_pred             -CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEE---EEECCCCcEEEEEec-CCCeEEEEEeCCC
Confidence             69999998754  667789999999999997 789999999999999   99996 555555554 46789999964 7


Q ss_pred             CCEEEEEeCC-eEEEEeCCCC--eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCC------ceeeeecCCC
Q psy11524        178 GDMFAVGSYN-TLRLCDKVGW--SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSS------SSSNVTAPLS  247 (323)
Q Consensus       178 ~~~l~~~~~~-~i~i~d~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~------~~~~~~~~~~  247 (323)
                      |.+|++|+.| .|++||++..  ......+|...|.++.|. ++.+|++++.|+ |++||++.+      +++..  +.+
T Consensus       630 g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~--~~g  706 (793)
T PLN00181        630 GRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHS--FMG  706 (793)
T ss_pred             CCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEE--EcC
Confidence            9999999996 9999998753  345667899999999997 678999999999 999998743      45555  678


Q ss_pred             CccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----------------cCCCCccceeEEEEeeCCCeeEeee
Q psy11524        248 HSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----------------LDKPDTGSVYDLVWSSDATQIAGAC  310 (323)
Q Consensus       248 ~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----------------~~~~~~~~v~~~~~s~~g~~l~s~~  310 (323)
                      |...+..++|+|++    ++|++++.++.+.+|+....                 ....|...|.+++|+|++..|++|+
T Consensus       707 h~~~i~~v~~s~~~----~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~  782 (793)
T PLN00181        707 HTNVKNFVGLSVSD----GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAAN  782 (793)
T ss_pred             CCCCeeEEEEcCCC----CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEec
Confidence            99999999999998    78888998999999886431                 0122346799999999999999999


Q ss_pred             cCCeEEEEEee
Q psy11524        311 ANGSLLLGTII  321 (323)
Q Consensus       311 ~dg~i~~~~l~  321 (323)
                      .||.|++|+++
T Consensus       783 ~dG~I~i~~~~  793 (793)
T PLN00181        783 STGNIKILEMV  793 (793)
T ss_pred             CCCcEEEEecC
Confidence            99999999974

>KOG0277|consensus

Probab=100.00  E-value=2.9e-32  Score=202.47  Aligned_cols=242  Identities=17%  Similarity=0.231  Sum_probs=203.7

Q ss_pred             cccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc---eeEeeccCCCeEEEEECC-CCCEEEEEcCCCc
Q psy11524         70 QALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK---ATKWQAHDGLILKVAWCS-STDLILSGGEDCK  145 (323)
Q Consensus        70 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~---~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~  145 (323)
                      +.++.++.+.-.+.+..++|++.....+.+...+|.+++||+...   ++.++.|...|.++.|++ +...+++++.|++
T Consensus        49 ~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~T  128 (311)
T KOG0277|consen   49 KGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGT  128 (311)
T ss_pred             CCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCc
Confidence            445566777788999999999976655544445589999997654   777899999999999998 4667888899999


Q ss_pred             eEeeeEEeCC-CCeeeEeecCCCceeEEEEec-CCCEEEEEeCC-eEEEEeCCC-CeeeecCCCCccEEEEEEcC-CCCE
Q psy11524        146 YKASFVWDTD-GRQLYSSLTHDHPISSLAWAP-GGDMFAVGSYN-TLRLCDKVG-WSHSLDKPDTGSVYDLVWSN-DATQ  220 (323)
Q Consensus       146 i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~~-~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~-~~~~  220 (323)
                      |+   +|+.+ .+.+.++.+|...|...+|+| .++.+++++.| ++++||++. .+...+..|...+.++.|+. +.+.
T Consensus       129 iK---LW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~v  205 (311)
T KOG0277|consen  129 IK---LWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNV  205 (311)
T ss_pred             eE---eecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcE
Confidence            99   99995 788899999999999999999 58889999987 999999873 23344777889999999998 6778


Q ss_pred             EEEEecCc-EEEEEcCCCc-eeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----cCCCCccc
Q psy11524        221 IAGACANV-IHIFDISSSS-SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----LDKPDTGS  293 (323)
Q Consensus       221 l~~~~~d~-i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~  293 (323)
                      |++|+.|+ |+.||+++-+ ++.+  +.+|...|+.++|||...   ..|+..+.|-.+++|+....     ....|.+-
T Consensus       206 l~Tg~vd~~vr~wDir~~r~pl~e--L~gh~~AVRkvk~Sph~~---~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEF  280 (311)
T KOG0277|consen  206 LATGGVDNLVRGWDIRNLRTPLFE--LNGHGLAVRKVKFSPHHA---SLLASASYDMTVRIWDPERQDSAIETVDHHTEF  280 (311)
T ss_pred             EEecCCCceEEEEehhhcccccee--ecCCceEEEEEecCcchh---hHhhhccccceEEecccccchhhhhhhhccceE
Confidence            99999999 9999999754 5666  789999999999999874   67778888888888888754     56678999


Q ss_pred             eeEEEEeeC-CCeeEeeecCCeEEEEE
Q psy11524        294 VYDLVWSSD-ATQIAGACANGSLLLGT  319 (323)
Q Consensus       294 v~~~~~s~~-g~~l~s~~~dg~i~~~~  319 (323)
                      |..+.||+- ..++|+++.|+.++||+
T Consensus       281 v~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  281 VCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             EeccccccccCceeeecccccceeeec
Confidence            999999985 56899999999999997

>KOG0315|consensus

Probab=100.00  E-value=2.4e-31  Score=197.14  Aligned_cols=219  Identities=13%  Similarity=0.171  Sum_probs=189.9

Q ss_pred             CeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC---CCeeeEeecCCCc
Q psy11524         94 NKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD---GRQLYSSLTHDHP  168 (323)
Q Consensus        94 ~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~---~~~~~~~~~~~~~  168 (323)
                      -+|++++.| .+|++|....+  .++++-..+.|+.+...||++.||+++. -.|+   +||++   ..++.++.+|...
T Consensus        11 viLvsA~YD-hTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvR---lyD~~S~np~Pv~t~e~h~kN   85 (311)
T KOG0315|consen   11 VILVSAGYD-HTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVR---LYDLNSNNPNPVATFEGHTKN   85 (311)
T ss_pred             eEEEeccCc-ceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeE---EEEccCCCCCceeEEeccCCc
Confidence            356777666 59999998776  5667766789999999999999988874 4688   99994   4578999999999


Q ss_pred             eeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCC
Q psy11524        169 ISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPL  246 (323)
Q Consensus       169 v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~  246 (323)
                      |+.+.|..+|+.+++|++| +++|||++....+....+.++|+++..+|+...|+++..+| |++||+....+...+ +.
T Consensus        86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l-iP  164 (311)
T KOG0315|consen   86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL-IP  164 (311)
T ss_pred             eEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc-CC
Confidence            9999999999999999997 99999999876666667889999999999999999999999 999999988766653 44


Q ss_pred             CCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----------cCCCCccceeEEEEeeCCCeeEeeecCCeEE
Q psy11524        247 SHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----------LDKPDTGSVYDLVWSSDATQIAGACANGSLL  316 (323)
Q Consensus       247 ~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~  316 (323)
                      ....++.++...|+|    ..++..+..|..++|++...          .++.|.+.+..+.+|||+++||+++.|.+++
T Consensus       165 e~~~~i~sl~v~~dg----sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~  240 (311)
T KOG0315|consen  165 EDDTSIQSLTVMPDG----SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVK  240 (311)
T ss_pred             CCCcceeeEEEcCCC----cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEE
Confidence            556799999999999    89999999999999998654          4456889999999999999999999999999


Q ss_pred             EEEeec
Q psy11524        317 LGTIIQ  322 (323)
Q Consensus       317 ~~~l~~  322 (323)
                      ||++.+
T Consensus       241 iwn~~~  246 (311)
T KOG0315|consen  241 IWNTDD  246 (311)
T ss_pred             EEecCC
Confidence            998743

>KOG0266|consensus

Probab=100.00  E-value=3e-31  Score=228.93  Aligned_cols=233  Identities=20%  Similarity=0.309  Sum_probs=200.3

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc----eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC-
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK----ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT-  154 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~-  154 (323)
                      +...|.++.|+|+|+++++++.+ +.+++|+....    .+.+.+|...|.+++|+|+++++++++.|++++   +||+ 
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~-~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tir---iwd~~  233 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSD-GLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLR---IWDLK  233 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCC-CcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEE---Eeecc
Confidence            47899999999999999888777 58999987332    345578999999999999999999999999999   9999 


Q ss_pred             C-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCC-CeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EE
Q psy11524        155 D-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IH  230 (323)
Q Consensus       155 ~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~  230 (323)
                      . +..++.+.+|...|++++|+|+|+.+++|+.| +|++||+++ .....+.+|.+.|.+++|++++.+|++++.|+ |+
T Consensus       234 ~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~  313 (456)
T KOG0266|consen  234 DDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIR  313 (456)
T ss_pred             CCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEE
Confidence            4 47889999999999999999999999999997 999999985 67778899999999999999999999999999 99


Q ss_pred             EEEcCCCc--eeeeecCCCCcc--ceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCcc---ceeEEEE
Q psy11524        231 IFDISSSS--SSNVTAPLSHSH--EITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTG---SVYDLVW  299 (323)
Q Consensus       231 iwd~~~~~--~~~~~~~~~~~~--~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~---~v~~~~~  299 (323)
                      +||+.++.  ++.+  +..+..  +++.+.|+|++    .++.+...++.+.+|++...    ....|..   .+.+...
T Consensus       314 vwd~~~~~~~~~~~--~~~~~~~~~~~~~~fsp~~----~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~  387 (456)
T KOG0266|consen  314 VWDLETGSKLCLKL--LSGAENSAPVTSVQFSPNG----KYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTL  387 (456)
T ss_pred             EEECCCCceeeeec--ccCCCCCCceeEEEECCCC----cEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccc
Confidence            99999998  4455  444444  59999999999    88888888888999988864    3334443   4555666


Q ss_pred             eeCCCeeEeeecCCeEEEEEeec
Q psy11524        300 SSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       300 s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      ++.++++++|+.|+.|++|++..
T Consensus       388 ~~~~~~i~sg~~d~~v~~~~~~s  410 (456)
T KOG0266|consen  388 STGGKLIYSGSEDGSVYVWDSSS  410 (456)
T ss_pred             cCCCCeEEEEeCCceEEEEeCCc
Confidence            88999999999999999999853

>KOG0285|consensus

Probab=100.00  E-value=6.9e-32  Score=209.67  Aligned_cols=239  Identities=17%  Similarity=0.181  Sum_probs=207.8

Q ss_pred             cceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEe
Q psy11524         72 LSLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKA  148 (323)
Q Consensus        72 ~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  148 (323)
                      -++.+.+. |.+.|.|+++.|.++++++++.| +.+.+||+..+  ..++.+|...|..+++|+...++.+++.|+.|+ 
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~D-rtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK-  218 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSAD-RTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK-  218 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCCceeEEecCCC-ceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE-
Confidence            34445554 99999999999999999999888 59999999887  567889999999999999999999999999999 


Q ss_pred             eeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEe
Q psy11524        149 SFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGAC  225 (323)
Q Consensus       149 i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~  225 (323)
                        .||++ ++.++.+.+|-..|.+++.+|.-+.|++++.| ++++||++++ .+..+.+|..+|.++.+.|-...+++|+
T Consensus       219 --CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S  296 (460)
T KOG0285|consen  219 --CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS  296 (460)
T ss_pred             --EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec
Confidence              99996 77788899999999999999999999999998 9999999865 6778899999999999999777899999


Q ss_pred             cCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEe
Q psy11524        226 ANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWS  300 (323)
Q Consensus       226 ~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s  300 (323)
                      .|+ |++||++.|+...+  +..|...+++++.+|..    ..++..+.+ .+.-|.+..+    -..+|..-+++++..
T Consensus       297 ~D~tvrlWDl~agkt~~t--lt~hkksvral~lhP~e----~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~n  369 (460)
T KOG0285|consen  297 HDSTVRLWDLRAGKTMIT--LTHHKKSVRALCLHPKE----NLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVN  369 (460)
T ss_pred             CCceEEEeeeccCceeEe--eecccceeeEEecCCch----hhhhccCCc-cceeccCCccchhhccccccceeeeeeec
Confidence            999 99999999999988  78899999999999986    455554443 3556666554    234578899999998


Q ss_pred             eCCCeeEeeecCCeEEEEEeec
Q psy11524        301 SDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       301 ~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      .|| ++++|+++|.+.+|+-.+
T Consensus       370 sD~-v~~~G~dng~~~fwdwks  390 (460)
T KOG0285|consen  370 SDG-VLVSGGDNGSIMFWDWKS  390 (460)
T ss_pred             cCc-eEEEcCCceEEEEEecCc
Confidence            887 899999999999998643

>KOG0306|consensus

Probab=100.00  E-value=2.7e-31  Score=224.10  Aligned_cols=275  Identities=16%  Similarity=0.196  Sum_probs=229.3

Q ss_pred             eeEeecccceeEeeEeccCCcceeeeeecc--ccc-cccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCC
Q psy11524         37 HLTIRRYDGTVINYPISPYISVLHSYAASH--SWP-QALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN  113 (323)
Q Consensus        37 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~  113 (323)
                      ...+.||...|.++.+|.+...+++.....  .|+ .+.++.++++.. .+.+..|-|.++++++|... |.+.++|...
T Consensus       366 ~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~-Gel~vfdlaS  443 (888)
T KOG0306|consen  366 NIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKN-GELQVFDLAS  443 (888)
T ss_pred             eeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccC-CceEEEEeeh
Confidence            357889999999999999984443332222  487 458888888654 99999999999999988655 7999999876


Q ss_pred             c--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC------CCe--eeE-----eecCCCceeEEEEecCC
Q psy11524        114 K--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD------GRQ--LYS-----SLTHDHPISSLAWAPGG  178 (323)
Q Consensus       114 ~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~------~~~--~~~-----~~~~~~~v~~~~~~p~~  178 (323)
                      .  +.+..+|.+.|++++.+||++.+++|+.|.+|+   +||..      +..  +..     ....+..|.++++||||
T Consensus       444 ~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVk---fWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg  520 (888)
T KOG0306|consen  444 ASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVK---FWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG  520 (888)
T ss_pred             hhhhhhhhccccceeeeeecCCCCceEEecCCcEEE---EEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC
Confidence            5  556779999999999999999999999999999   99972      111  111     12345679999999999


Q ss_pred             CEEEEEeCC-eEEEEeCCCCee-eecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEE
Q psy11524        179 DMFAVGSYN-TLRLCDKVGWSH-SLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQL  255 (323)
Q Consensus       179 ~~l~~~~~~-~i~i~d~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~  255 (323)
                      ++++++--| ++++|-+.+.+. ..+.+|.-+|.|+..+||++.++||+.|. |++|-+.-|.+-+.  +.+|...|.++
T Consensus       521 k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS--~fAHdDSvm~V  598 (888)
T KOG0306|consen  521 KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS--FFAHDDSVMSV  598 (888)
T ss_pred             cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhh--hhcccCceeEE
Confidence            999999887 999999987644 46789999999999999999999999999 99999999999998  89999999999


Q ss_pred             EEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        256 AVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       256 ~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      .|-|..    ..+..++.++.+.-|+-...    ...+|...|++++.+|+|.++++++.|..|++|+-.+
T Consensus       599 ~F~P~~----~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  599 QFLPKT----HLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             EEcccc----eeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            999986    66666777777777765553    5566899999999999999999999999999998643

>KOG0265|consensus

Probab=100.00  E-value=1.9e-31  Score=202.55  Aligned_cols=235  Identities=16%  Similarity=0.208  Sum_probs=195.4

Q ss_pred             cCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc---eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC
Q psy11524         78 LNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK---ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT  154 (323)
Q Consensus        78 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~  154 (323)
                      ..|++.|+.+.|+|+|..||+++.|. .|.+|+..+.   ...+++|+++|..+.|.+|++.+++++.|.+++   .||.
T Consensus        44 ~gh~geI~~~~F~P~gs~~aSgG~Dr-~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~---~wD~  119 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHPDGSCFASGGSDR-AIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR---GWDA  119 (338)
T ss_pred             CCCcceEEEEEECCCCCeEeecCCcc-eEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEE---EEec
Confidence            35899999999999999999999996 9999986554   567789999999999999999999999999999   9999


Q ss_pred             C-CCeeeEeecCCCceeEEEEecCCCEE-EEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EE
Q psy11524        155 D-GRQLYSSLTHDHPISSLAWAPGGDMF-AVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IH  230 (323)
Q Consensus       155 ~-~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~  230 (323)
                      + +++.+....|..-++++.-+.-|..+ .++++| ++++||++.+...........++++.|..++..+.+|+-|+ |+
T Consensus       120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ik  199 (338)
T KOG0265|consen  120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIK  199 (338)
T ss_pred             ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCcee
Confidence            5 88889999999999988855445554 455556 99999999765544444677899999999999999999999 99


Q ss_pred             EEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc--------cCCCC----ccceeEEE
Q psy11524        231 IFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS--------LDKPD----TGSVYDLV  298 (323)
Q Consensus       231 iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~--------~~~~~----~~~v~~~~  298 (323)
                      +||++.+..+.+  +.+|..+|+.+..+|+|    ..+..-.++..+++|+++..        ++.+|    +......+
T Consensus       200 vWd~r~~d~~~~--lsGh~DtIt~lsls~~g----s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs  273 (338)
T KOG0265|consen  200 VWDLRKNDGLYT--LSGHADTITGLSLSRYG----SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS  273 (338)
T ss_pred             eeccccCcceEE--eecccCceeeEEeccCC----CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence            999999999988  89999999999999999    45555555555566655442        12222    23457889


Q ss_pred             EeeCCCeeEeeecCCeEEEEEeec
Q psy11524        299 WSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       299 ~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      |+|+++.+..|+.|..+++|+...
T Consensus       274 wsp~~~~i~ags~dr~vyvwd~~~  297 (338)
T KOG0265|consen  274 WSPNGTKITAGSADRFVYVWDTTS  297 (338)
T ss_pred             ccCCCCccccccccceEEEeeccc
Confidence            999999999999999999998653

>KOG0296|consensus

Probab=100.00  E-value=1.4e-30  Score=202.77  Aligned_cols=270  Identities=13%  Similarity=0.105  Sum_probs=217.6

Q ss_pred             eeeEeecccceeEeeEeccCCcceeeeeeccccccccceee---------ecCCCCCEEEEEEcCCCCeEEEEeeCCeEE
Q psy11524         36 NHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCR---------TLNVSPPVYSAAWSPDSNKVLLTQAKSLVI  106 (323)
Q Consensus        36 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v  106 (323)
                      ...++..|..+|++++.+|+.    .++++|+-|....+|.         .-+|+..|+++.||.+|.+||+|.-+ |.|
T Consensus        56 S~~tF~~H~~svFavsl~P~~----~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdms-G~v  130 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNN----NLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMS-GKV  130 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCC----ceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCC-ccE
Confidence            346789999999999999976    5677775443333332         23499999999999999999998766 699


Q ss_pred             EEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC-CeeeEeecCCCceeEEEEecCCCEEEE
Q psy11524        107 KPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG-RQLYSSLTHDHPISSLAWAPGGDMFAV  183 (323)
Q Consensus       107 ~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~~  183 (323)
                      ++|+..++  ...+...-..+.-+.|+|.+..|++|+.||.+-   +|.+.. ...+.+.+|..++++-.|.|+|+.+++
T Consensus       131 ~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvW---mw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~t  207 (399)
T KOG0296|consen  131 LVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVW---MWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILT  207 (399)
T ss_pred             EEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEE---EEECCCcceeeEecCCCCCcccccccCCCceEEE
Confidence            99998877  444445667788999999999999999999998   999964 778888999999999999999999999


Q ss_pred             EeCC-eEEEEeCCC-CeeeecC---------------------------------------------------CCCccEE
Q psy11524        184 GSYN-TLRLCDKVG-WSHSLDK---------------------------------------------------PDTGSVY  210 (323)
Q Consensus       184 ~~~~-~i~i~d~~~-~~~~~~~---------------------------------------------------~~~~~v~  210 (323)
                      +..| +|++||+.+ .++....                                                   .+...+.
T Consensus       208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e  287 (399)
T KOG0296|consen  208 GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE  287 (399)
T ss_pred             EecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence            9996 999999763 2221111                                                   0111122


Q ss_pred             EEE---EcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-
Q psy11524        211 DLV---WSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-  285 (323)
Q Consensus       211 ~~~---~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-  285 (323)
                      ++.   ++..=.+.|+|+-|| |.|||.....+...   -.|..+|..+.|-++     .+|.....+|.++.|+.+++ 
T Consensus       288 sve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~---c~he~~V~~l~w~~t-----~~l~t~c~~g~v~~wDaRtG~  359 (399)
T KOG0296|consen  288 SVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI---CEHEDGVTKLKWLNT-----DYLLTACANGKVRQWDARTGQ  359 (399)
T ss_pred             hhhhcccccccchhhcccccceEEEEecccchhhee---ccCCCceEEEEEcCc-----chheeeccCceEEeeeccccc
Confidence            233   333445677889999 99999988877664   568889999999994     68888999999999999887 


Q ss_pred             ---cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        286 ---LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       286 ---~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                         .+.+|...|.+++++|+.+++++++.|++.+|+++.
T Consensus       360 l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  360 LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence               677899999999999999999999999999999864

>KOG0278|consensus

Probab=100.00  E-value=7.6e-32  Score=199.94  Aligned_cols=271  Identities=17%  Similarity=0.189  Sum_probs=221.1

Q ss_pred             eeeeEeecccceeEeeEecc---CCcceeeeeeccccccccce--------eeec-CCCCCEEEEEEcCCCCeEEEEeeC
Q psy11524         35 KNHLTIRRYDGTVINYPISP---YISVLHSYAASHSWPQALSL--------CRTL-NVSPPVYSAAWSPDSNKVLLTQAK  102 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~v~~~~~sp~~~~l~~~~~~  102 (323)
                      +..++..||..+|..+.|||   +|    .++.+++-|....+        .-++ .|.+.|.+..++.+....|+++.|
T Consensus         5 ~~pl~c~ghtrpvvdl~~s~itp~g----~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaad   80 (334)
T KOG0278|consen    5 QTPLTCHGHTRPVVDLAFSPITPDG----YFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAAD   80 (334)
T ss_pred             cCceEEcCCCcceeEEeccCCCCCc----eEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhccc
Confidence            34567889999999999885   57    45555544432222        2333 499999999999998888888777


Q ss_pred             CeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC--CCeeeEeecCCCceeEEEEecCC
Q psy11524        103 SLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD--GRQLYSSLTHDHPISSLAWAPGG  178 (323)
Q Consensus       103 ~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~--~~~~~~~~~~~~~v~~~~~~p~~  178 (323)
                      - .-++||.-..  +..+ .|..-|.+++|+.|.++|++|+.+.-++   |+|++  ..+...+.+|.+.|..+.|....
T Consensus        81 f-takvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllr---vfdln~p~App~E~~ghtg~Ir~v~wc~eD  155 (334)
T KOG0278|consen   81 F-TAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLR---VFDLNRPKAPPKEISGHTGGIRTVLWCHED  155 (334)
T ss_pred             c-hhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhh---hhhccCCCCCchhhcCCCCcceeEEEeccC
Confidence            4 8899997554  4444 6888999999999999999999999999   99995  55677889999999999999888


Q ss_pred             CEEEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCcEEEEEcCCCceeeeecCCCCccceEEEEE
Q psy11524        179 DMFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISSSSSSNVTAPLSHSHEITQLAV  257 (323)
Q Consensus       179 ~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  257 (323)
                      +.|++++++ +|++||.++.........+.+|.++.++++|++|.++...+|.+||..+-..++.   ......|.+..+
T Consensus       156 ~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs---~k~P~nV~SASL  232 (334)
T KOG0278|consen  156 KCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKS---YKMPCNVESASL  232 (334)
T ss_pred             ceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceee---ccCccccccccc
Confidence            888888776 9999998866554444467889999999999877666544499999999988886   456678999999


Q ss_pred             ccCCCCccceEEEEeCCCCeEEEecccc----c-CCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        258 NQTGSLQERHVAFIDKNRDLYLSMWSHS----L-DKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       258 ~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~-~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +|+.    +.+..+..+..++.+++.++    . .++|.++|.++.|+|||...++|+.||+|++|...
T Consensus       233 ~P~k----~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  233 HPKK----EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             cCCC----ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence            9997    67777888888888888776    3 47899999999999999999999999999999864

>KOG0316|consensus

Probab=100.00  E-value=2.6e-30  Score=190.16  Aligned_cols=230  Identities=17%  Similarity=0.231  Sum_probs=199.2

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-  155 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-  155 (323)
                      .+.++|.++.|+-||+|.++++.+. .|++|+....  ++++.+|...|..++.+.|...+++|+.|..+.   +||++ 
T Consensus        15 ~~qgaV~avryN~dGnY~ltcGsdr-tvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~---vwDV~T   90 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDGNYCLTCGSDR-TVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQ---VWDVNT   90 (307)
T ss_pred             ccccceEEEEEccCCCEEEEcCCCc-eEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEE---EEEccc
Confidence            3789999999999999999998885 9999998766  788999999999999999999999999999999   99995 


Q ss_pred             CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC---eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EE
Q psy11524        156 GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW---SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IH  230 (323)
Q Consensus       156 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~  230 (323)
                      ++..+.+.+|.+.|+.++|+.+...+++|+.| .+++||.+..   +++.+......|.++..+.  ..|++|+.|| ++
T Consensus        91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--heIvaGS~DGtvR  168 (307)
T KOG0316|consen   91 GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--HEIVAGSVDGTVR  168 (307)
T ss_pred             CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--cEEEeeccCCcEE
Confidence            88899999999999999999999999999998 9999998753   5566666778899998864  4699999999 99


Q ss_pred             EEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccc--eeEEEEeeCCC
Q psy11524        231 IFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGS--VYDLVWSSDAT  304 (323)
Q Consensus       231 iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~--v~~~~~s~~g~  304 (323)
                      .||++.|.....    ....+|+++.|++++    +...+...++.+++.+-.++    ..++|...  =...+++....
T Consensus       169 tydiR~G~l~sD----y~g~pit~vs~s~d~----nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdt  240 (307)
T KOG0316|consen  169 TYDIRKGTLSSD----YFGHPITSVSFSKDG----NCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDT  240 (307)
T ss_pred             EEEeecceeehh----hcCCcceeEEecCCC----CEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccce
Confidence            999999987654    345689999999999    78888888888888877765    55666543  34556666677


Q ss_pred             eeEeeecCCeEEEEEeec
Q psy11524        305 QIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       305 ~l~s~~~dg~i~~~~l~~  322 (323)
                      ++++|++||.|++|+|++
T Consensus       241 hV~sgSEDG~Vy~wdLvd  258 (307)
T KOG0316|consen  241 HVFSGSEDGKVYFWDLVD  258 (307)
T ss_pred             eEEeccCCceEEEEEecc
Confidence            999999999999999976

>KOG0973|consensus

Probab=100.00  E-value=2.4e-30  Score=226.74  Aligned_cols=275  Identities=19%  Similarity=0.264  Sum_probs=216.3

Q ss_pred             cccceeEeeEeccCCcceeeee--ecc---cccc--------------ccceeeecCCCCCEEEEEEcCCCCeEEEEeeC
Q psy11524         42 RYDGTVINYPISPYISVLHSYA--ASH---SWPQ--------------ALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAK  102 (323)
Q Consensus        42 ~~~~~v~~~~~~~~~~~~~~~~--~~~---~~~~--------------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~  102 (323)
                      .+...|.++.++|+|..+++..  .++   .|..              ...++....|.+.|+|+.|+|||++||+|++|
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence            3456699999999995444333  111   2321              11223333599999999999999999999887


Q ss_pred             CeEEEEeCCCC--------------------ceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeE
Q psy11524        103 SLVIKPLSPNN--------------------KATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYS  161 (323)
Q Consensus       103 ~~~v~~~~~~~--------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~  161 (323)
                       ..|.+|....                    ....+.+|+..|..++|+|++.+|++++.|++|.   +|+.. .+.+..
T Consensus        91 -~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsVi---iwn~~tF~~~~v  166 (942)
T KOG0973|consen   91 -RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVI---IWNAKTFELLKV  166 (942)
T ss_pred             -ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEE---EEccccceeeee
Confidence             4888998662                    1345788999999999999999999999999999   99984 788889


Q ss_pred             eecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeee-ecCC------CCccEEEEEEcCCCCEEEEEec--Cc---
Q psy11524        162 SLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHS-LDKP------DTGSVYDLVWSNDATQIAGACA--NV---  228 (323)
Q Consensus       162 ~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~-~~~~------~~~~v~~~~~~~~~~~l~~~~~--d~---  228 (323)
                      +.+|.+.|..+.|.|-|++||+-++| +|++|+.....+. .+.+      ....++.+.|||||++|++...  ++   
T Consensus       167 l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~  246 (942)
T KOG0973|consen  167 LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKST  246 (942)
T ss_pred             eecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcce
Confidence            99999999999999999999999998 9999997654322 2222      2345889999999999998643  22   


Q ss_pred             EEEEEcCCCceeeeecCCCCccceEEEEEccCCC--------C-cc----ceEEEEeCCCCeEEEecccc-----cCCCC
Q psy11524        229 IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGS--------L-QE----RHVAFIDKNRDLYLSMWSHS-----LDKPD  290 (323)
Q Consensus       229 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~--------~-~d----~~l~~~~~~~~~~~~~~~~~-----~~~~~  290 (323)
                      +.|.+..+.+.-..  +.+|..++.+++|+|.--        + ..    ..+++++.|+.+.+|.....     ....-
T Consensus       247 ~~IieR~tWk~~~~--LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf  324 (942)
T KOG0973|consen  247 IAIIERGTWKVDKD--LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF  324 (942)
T ss_pred             eEEEecCCceeeee--eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh
Confidence            88999777776666  799999999999998421        1 11    26788999999999998653     22233


Q ss_pred             ccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        291 TGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       291 ~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      ...|..++|+|||-.|+.++.||+|.+..+.+
T Consensus       325 ~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  325 NKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             cCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence            67899999999999999999999999998765

>KOG0276|consensus

Probab=100.00  E-value=1.2e-30  Score=216.15  Aligned_cols=268  Identities=13%  Similarity=0.185  Sum_probs=229.8

Q ss_pred             eecccceeEeeEeccCCcceeeeeecc---ccc-cccceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc
Q psy11524         40 IRRYDGTVINYPISPYISVLHSYAASH---SWP-QALSLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK  114 (323)
Q Consensus        40 ~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~  114 (323)
                      +..++..|-++.++|....+...+.+|   .|+ .+..+.+.++ ...+|.+..|-+..+++++|++| ..|++++.++.
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD-~~IrVfnynt~   87 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDD-MQIRVFNYNTG   87 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCC-ceEEEEecccc
Confidence            445888999999999986665555555   466 4445556665 57899999999999999988766 68988887764


Q ss_pred             --eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC--CeeeEeecCCCceeEEEEec-CCCEEEEEeCC-e
Q psy11524        115 --ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG--RQLYSSLTHDHPISSLAWAP-GGDMFAVGSYN-T  188 (323)
Q Consensus       115 --~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~--~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~~-~  188 (323)
                        +..+.+|+..|++++.+|...++++++.|-+|+   +||.++  .+...+++|...|.+++|+| |.+.|++++-| +
T Consensus        88 ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iK---lW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT  164 (794)
T KOG0276|consen   88 EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIK---LWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT  164 (794)
T ss_pred             eeeEEeeccccceeeeeecCCCCeEEecCCccEEE---EeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence              889999999999999999999999999999999   999864  56778999999999999999 67889999998 9


Q ss_pred             EEEEeCCCC-eeeecCCCCccEEEEEEcCCC--CEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCc
Q psy11524        189 LRLCDKVGW-SHSLDKPDTGSVYDLVWSNDA--TQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQ  264 (323)
Q Consensus       189 i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~  264 (323)
                      |++|.+... +..++.+|...|.++.+-+.|  .+|++|++|. +++||..+..++++  +.+|...|..+.|+|.-   
T Consensus       165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T--LeGHt~Nvs~v~fhp~l---  239 (794)
T KOG0276|consen  165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT--LEGHTNNVSFVFFHPEL---  239 (794)
T ss_pred             EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH--hhcccccceEEEecCCC---
Confidence            999998754 556778999999999999844  6999999999 99999999999999  89999999999999997   


Q ss_pred             cceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEE
Q psy11524        265 ERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLL  317 (323)
Q Consensus       265 d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~  317 (323)
                       ..|..++.||.+++|+..+.    ......+.+++++-.+.++.++.|.+.|.|.+
T Consensus       240 -piiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  240 -PIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             -cEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence             78999999999999988764    22233588999999999889999998888765

>KOG0643|consensus

Probab=99.98  E-value=9.1e-30  Score=190.59  Aligned_cols=272  Identities=15%  Similarity=0.203  Sum_probs=213.1

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeecc---ccc-cccceeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCC
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASH---SWP-QALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPN  112 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~  112 (323)
                      ..+.||..++..+.++.+|..|.++..+.   .|- ..++.+-++ +|.+.|.|+..+-+.+++++|+.|. .+++||..
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~-t~kLWDv~   82 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQ-TAKLWDVE   82 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccc-eeEEEEcC
Confidence            34679999999999999997666554432   131 123223333 3999999999999999999999886 99999988


Q ss_pred             Cc-eeEeeccCCCeEEEEECCCCCEEEEEcC-----CCceEeeeEEeCC--------CCeeeEeecCCCceeEEEEecCC
Q psy11524        113 NK-ATKWQAHDGLILKVAWCSSTDLILSGGE-----DCKYKASFVWDTD--------GRQLYSSLTHDHPISSLAWAPGG  178 (323)
Q Consensus       113 ~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~~i~v~d~~--------~~~~~~~~~~~~~v~~~~~~p~~  178 (323)
                      .. ....-....+|..+.|+++|++++.+..     .+.|.   ++|++        ..+...+..+...++.+-|+|-+
T Consensus        83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~---~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~  159 (327)
T KOG0643|consen   83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVS---VFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG  159 (327)
T ss_pred             CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEE---EEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence            76 3333346788999999999998887654     35566   99984        23477788888999999999999


Q ss_pred             CEEEEEeCC-eEEEEeCCCC--eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEE
Q psy11524        179 DMFAVGSYN-TLRLCDKVGW--SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQ  254 (323)
Q Consensus       179 ~~l~~~~~~-~i~i~d~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~  254 (323)
                      ++|++|.++ .|..||+++.  .+.....|...|+.++++||..++++++.|. -++||+.+-+.+++   .....||++
T Consensus       160 ~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt---y~te~PvN~  236 (327)
T KOG0643|consen  160 ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT---YTTERPVNT  236 (327)
T ss_pred             CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEE---eeecccccc
Confidence            999999995 9999998853  3345567889999999999999999999999 99999999998887   345679999


Q ss_pred             EEEccCCCCccceEEEEeCCCCeEEEeccc------------------ccCCCCccceeEEEEeeCCCeeEeeecCCeEE
Q psy11524        255 LAVNQTGSLQERHVAFIDKNRDLYLSMWSH------------------SLDKPDTGSVYDLVWSSDATQIAGACANGSLL  316 (323)
Q Consensus       255 ~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~------------------~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~  316 (323)
                      .+++|..    ..+.++......-+-....                  +..++|-++|++++|+|+|+..++|+.||.|+
T Consensus       237 aaisP~~----d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR  312 (327)
T KOG0643|consen  237 AAISPLL----DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVR  312 (327)
T ss_pred             eeccccc----ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEE
Confidence            9999976    4555543222111111110                  15677899999999999999999999999999


Q ss_pred             EEEe
Q psy11524        317 LGTI  320 (323)
Q Consensus       317 ~~~l  320 (323)
                      +..+
T Consensus       313 ~h~F  316 (327)
T KOG0643|consen  313 LHHF  316 (327)
T ss_pred             EEEe
Confidence            9865

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.98  E-value=2.5e-29  Score=205.71  Aligned_cols=233  Identities=19%  Similarity=0.279  Sum_probs=202.1

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG  156 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~  156 (323)
                      .|..+|.+++|+|+++++++++.+ +.+++|+....  ...+..|...+..+.|+|+++.+++++.+|.++   +|++..
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~~~-g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~---i~~~~~   82 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGSGD-GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIR---LWDLET   82 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEeecC-cEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEE---EEEcCc
Confidence            489999999999999999988766 69999998765  566778899999999999999999999999999   999974


Q ss_pred             -CeeeEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCC-CCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEE
Q psy11524        157 -RQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKV-GWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIF  232 (323)
Q Consensus       157 -~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iw  232 (323)
                       +....+..+...+.++.|+|+++++++++. +.+++||++ ......+..|...+.+++|+|++.++++++.++ |++|
T Consensus        83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~  162 (289)
T cd00200          83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW  162 (289)
T ss_pred             ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence             677778888889999999999888888885 599999988 445555667888999999999998998888889 9999


Q ss_pred             EcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEe
Q psy11524        233 DISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAG  308 (323)
Q Consensus       233 d~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s  308 (323)
                      |+++++.+..  +..+...+.++.|+|++    ..+.+...++.+.+|++...    ....|...+.+++|+|++.++++
T Consensus       163 d~~~~~~~~~--~~~~~~~i~~~~~~~~~----~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  236 (289)
T cd00200         163 DLRTGKCVAT--LTGHTGEVNSVAFSPDG----EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS  236 (289)
T ss_pred             Ecccccccee--EecCccccceEEECCCc----CEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE
Confidence            9998888877  56788899999999998    78888888999999998754    33356789999999999888888


Q ss_pred             eecCCeEEEEEee
Q psy11524        309 ACANGSLLLGTII  321 (323)
Q Consensus       309 ~~~dg~i~~~~l~  321 (323)
                      ++.||.|++|++.
T Consensus       237 ~~~~~~i~i~~~~  249 (289)
T cd00200         237 GSEDGTIRVWDLR  249 (289)
T ss_pred             EcCCCcEEEEEcC
Confidence            8889999999975

>KOG0282|consensus

Probab=99.98  E-value=3.4e-31  Score=213.10  Aligned_cols=270  Identities=16%  Similarity=0.170  Sum_probs=219.6

Q ss_pred             eeeEeecccceeEeeEecc-CCcceeeeeecccccccccee---------eec-CCCCCEEEEEEcCCCCeEEEEeeCCe
Q psy11524         36 NHLTIRRYDGTVINYPISP-YISVLHSYAASHSWPQALSLC---------RTL-NVSPPVYSAAWSPDSNKVLLTQAKSL  104 (323)
Q Consensus        36 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~  104 (323)
                      ...++.||...|.++.|.| .+    .++.+++.|..+++|         +++ .|..+|.+++|+++|..+++++.| .
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~----hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD-~  280 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKG----HLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFD-R  280 (503)
T ss_pred             heeeccCCccccchhhhcccee----eEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecc-e
Confidence            3467899999999999999 56    556666655555544         444 389999999999999999999988 5


Q ss_pred             EEEEeCCCCceeEeec-cCCCeEEEEECCCC-CEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEE
Q psy11524        105 VIKPLSPNNKATKWQA-HDGLILKVAWCSST-DLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMF  181 (323)
Q Consensus       105 ~v~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l  181 (323)
                      .+++||++++.....- ....+.++.|+||+ +.+++|+.|+.|+   .||++ ++.+..+..|-+.|..+.|-++|+.+
T Consensus       281 ~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~---~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rF  357 (503)
T KOG0282|consen  281 FLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIR---QWDIRSGKVVQEYDRHLGAILDITFVDEGRRF  357 (503)
T ss_pred             eeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEE---EEeccchHHHHHHHhhhhheeeeEEccCCceE
Confidence            9999999988443333 34567899999998 8899999999999   99996 67777888899999999999999999


Q ss_pred             EEEeCC-eEEEEeCCCC-eeee-cCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCc---eeeeecCCCCcc--ce
Q psy11524        182 AVGSYN-TLRLCDKVGW-SHSL-DKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSS---SSNVTAPLSHSH--EI  252 (323)
Q Consensus       182 ~~~~~~-~i~i~d~~~~-~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~---~~~~~~~~~~~~--~v  252 (323)
                      ++.+++ .++||+.+.. .+.. .....-...++..+|++++++.-+.|+ |.+|.+...-   ..+.  +.+|..  .-
T Consensus       358 issSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~--feGh~vaGys  435 (503)
T KOG0282|consen  358 ISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKR--FEGHSVAGYS  435 (503)
T ss_pred             eeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhh--hcceeccCce
Confidence            999997 9999998754 2222 222334577899999999999999999 9999865321   1122  556643  45


Q ss_pred             EEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCC-CeeEeeecCCeEEEEE
Q psy11524        253 TQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDA-TQIAGACANGSLLLGT  319 (323)
Q Consensus       253 ~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g-~~l~s~~~dg~i~~~~  319 (323)
                      ..+.|||||    ++|..++.+|.+.+|+.++.    ..+.|.+.+..+.|+|.. ..+|+++.||.|++|+
T Consensus       436 ~~v~fSpDG----~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  436 CQVDFSPDG----RTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eeEEEcCCC----CeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            678999999    99999999999999999886    667789999999999975 4899999999999995

>KOG0319|consensus

Probab=99.98  E-value=2.6e-30  Score=217.76  Aligned_cols=273  Identities=17%  Similarity=0.213  Sum_probs=223.2

Q ss_pred             eeEeecccceeEeeEec-cCCcceeeeeeccc---cccccceeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCC
Q psy11524         37 HLTIRRYDGTVINYPIS-PYISVLHSYAASHS---WPQALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSP  111 (323)
Q Consensus        37 ~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~  111 (323)
                      ...+-|..+.|..+.|- |+.+.++..-.++.   ++....-++.+ +|++.|.++....+|.+|++|+.|+ .+++|.+
T Consensus       316 ~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~-svilWr~  394 (775)
T KOG0319|consen  316 VKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDK-SVILWRL  394 (775)
T ss_pred             ehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCc-eEEEEEe
Confidence            34566788889988776 55544442222221   23222222333 4999999999777888999988885 9999976


Q ss_pred             CCc------eeEeeccCCCeEEEEECCCC-CEEEEEcCCCceEeeeEEeCCC----Ceee------EeecCCCceeEEEE
Q psy11524        112 NNK------ATKWQAHDGLILKVAWCSST-DLILSGGEDCKYKASFVWDTDG----RQLY------SSLTHDHPISSLAW  174 (323)
Q Consensus       112 ~~~------~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~i~v~d~~~----~~~~------~~~~~~~~v~~~~~  174 (323)
                      ++.      .....+|...|.+++++..+ ..|++++.|++++   +|++..    ....      ....|+..|+++++
T Consensus       395 ~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK---~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai  471 (775)
T KOG0319|consen  395 NNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLK---LWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI  471 (775)
T ss_pred             cCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEE---EecCCCcccccccceehhhHHHHhhcccccceEe
Confidence            433      44567899999999997754 6899999999999   999843    1111      22468999999999


Q ss_pred             ecCCCEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccc
Q psy11524        175 APGGDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHE  251 (323)
Q Consensus       175 ~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~  251 (323)
                      +|+.+++|+|+.| +.+||++... ...++.+|...+.++.|+|..+.++++|.|+ |+||.+.+..++++  +.+|...
T Consensus       472 a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT--~eGH~~a  549 (775)
T KOG0319|consen  472 APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKT--FEGHTSA  549 (775)
T ss_pred             cCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeee--ecCccce
Confidence            9999999999998 9999998844 4558899999999999999999999999999 99999999999999  8999999


Q ss_pred             eEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        252 ITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       252 v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      |..+.|-.++    ..+..+..+|-+++|++++.    ....|...|++++.+|.+..+++|+.||.|.+|+
T Consensus       550 Vlra~F~~~~----~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  550 VLRASFIRNG----KQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             eEeeeeeeCC----cEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            9999999998    78888888888889988876    5667999999999999999999999999999996

>KOG0283|consensus

Probab=99.98  E-value=2.9e-30  Score=220.75  Aligned_cols=233  Identities=16%  Similarity=0.188  Sum_probs=188.0

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCC----------------------------------------------
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN----------------------------------------------  113 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~----------------------------------------------  113 (323)
                      |.+.|.+|.||+||+|||+||.| +.|++|...+                                              
T Consensus       266 h~gaIw~mKFS~DGKyLAsaGeD-~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  266 HKGAIWAMKFSHDGKYLASAGED-GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             cCCcEEEEEeCCCCceeeecCCC-ceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            78888888888888888888777 5888885332                                              


Q ss_pred             ----------------ceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEec-
Q psy11524        114 ----------------KATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAP-  176 (323)
Q Consensus       114 ----------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p-  176 (323)
                                      ..+.+.+|.+.|.++.|+.+ .+|++++.|.+|+   +|++..+.+.....|...|+|++|+| 
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVR---LWh~~~~~CL~~F~HndfVTcVaFnPv  420 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVR---LWHPGRKECLKVFSHNDFVTCVAFNPV  420 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEE---eecCCCcceeeEEecCCeeEEEEeccc
Confidence                            02245678999999999975 6899999999999   99998666666667999999999999 


Q ss_pred             CCCEEEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCC------
Q psy11524        177 GGDMFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSH------  248 (323)
Q Consensus       177 ~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~------  248 (323)
                      |.++|++|+-| .++||++....+.........|++++|.|||++.++|+.+| +++|+....+......+..+      
T Consensus       421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~  500 (712)
T KOG0283|consen  421 DDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQ  500 (712)
T ss_pred             CCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcccc
Confidence            78999999997 99999999888877777778999999999999999999999 99999887765554222211      


Q ss_pred             ccceEEEEEccCCCCccceEEEEeCCCCeEEEeccc--c--cCCC-C-ccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        249 SHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH--S--LDKP-D-TGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       249 ~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~--~--~~~~-~-~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      ...|+.+.|.|...   ..|.+-+.|..++|++...  .  .+++ + ...-...+|+.||++|+++++|..|++|++
T Consensus       501 ~~rITG~Q~~p~~~---~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  501 GKRITGLQFFPGDP---DEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             CceeeeeEecCCCC---CeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence            23799999998753   4677888889999999843  2  2222 1 234467789999999999999999999996

>KOG0292|consensus

Probab=99.97  E-value=5.9e-30  Score=219.74  Aligned_cols=272  Identities=12%  Similarity=0.176  Sum_probs=220.2

Q ss_pred             ecccceeEeeEeccCCcceeeeeeccc---cc-cccceeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-
Q psy11524         41 RRYDGTVINYPISPYISVLHSYAASHS---WP-QALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-  114 (323)
Q Consensus        41 ~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-  114 (323)
                      +.-+..|-.++|+|....+...+-+|.   || +...++..+ +|.++|..++|+|++..+++|++| -.|++|+.... 
T Consensus         6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDD-ykIkVWnYk~rr   84 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDD-YKIKVWNYKTRR   84 (1202)
T ss_pred             hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCc-cEEEEEecccce
Confidence            344667888999999887777777774   88 455555555 599999999999999999998777 49999998776 


Q ss_pred             -eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEE
Q psy11524        115 -ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRL  191 (323)
Q Consensus       115 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i  191 (323)
                       +.++.+|-..|..+.|++.-.+++++|.|-+|+   ||+.. ++++..+++|...|.|.+|+|....+++++-| +|++
T Consensus        85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIr---IWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV  161 (1202)
T KOG0292|consen   85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIR---IWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV  161 (1202)
T ss_pred             ehhhhccccceeEEeeccCCCceEEEccCCCeEE---EEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence             677899999999999999999999999999999   99985 78899999999999999999999999999998 9999


Q ss_pred             EeCCCCee------------------------------eecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCcee
Q psy11524        192 CDKVGWSH------------------------------SLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSS  240 (323)
Q Consensus       192 ~d~~~~~~------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~  240 (323)
                      ||+.+...                              ..+.+|...|.-++|+|.-..+++|++|. |++|.+..-+.-
T Consensus       162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW  241 (1202)
T KOG0292|consen  162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW  241 (1202)
T ss_pred             EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce
Confidence            99754110                              13457888899999999999999999999 999998765533


Q ss_pred             eeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEE
Q psy11524        241 NVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLL  316 (323)
Q Consensus       241 ~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~  316 (323)
                      ..-+..+|...|.++-|+|..    ..|..-+.|+.+++|++...    .++...+..+.++-+|..+.+++|. |+-+.
T Consensus       242 EvDtcrgH~nnVssvlfhp~q----~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~  316 (1202)
T KOG0292|consen  242 EVDTCRGHYNNVSSVLFHPHQ----DLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMI  316 (1202)
T ss_pred             eehhhhcccCCcceEEecCcc----ceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceE
Confidence            322268999999999999986    45555555666666665543    2222368899999999998777766 55566


Q ss_pred             EEEee
Q psy11524        317 LGTII  321 (323)
Q Consensus       317 ~~~l~  321 (323)
                      +|++.
T Consensus       317 VFkle  321 (1202)
T KOG0292|consen  317 VFKLE  321 (1202)
T ss_pred             EEEEc
Confidence            77775

>KOG0276|consensus

Probab=99.97  E-value=2.8e-30  Score=213.96  Aligned_cols=234  Identities=13%  Similarity=0.163  Sum_probs=209.5

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-  155 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-  155 (323)
                      .+...|.++.|+|...+++++-.+ |.|.+|+.++.  ++.+.-...+|++..|-+..+++++|+.|..|+   ||+.+ 
T Consensus        11 ~rSdRVKsVd~HPtePw~la~Lyn-G~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~Ir---Vfnynt   86 (794)
T KOG0276|consen   11 SRSDRVKSVDFHPTEPWILAALYN-GDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIR---VFNYNT   86 (794)
T ss_pred             ccCCceeeeecCCCCceEEEeeec-CeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEE---EEeccc
Confidence            488999999999999999977655 79999998876  777888889999999999999999999999999   99995 


Q ss_pred             CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC--eeeecCCCCccEEEEEEcC-CCCEEEEEecCc-EE
Q psy11524        156 GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW--SHSLDKPDTGSVYDLVWSN-DATQIAGACANV-IH  230 (323)
Q Consensus       156 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~-i~  230 (323)
                      .+.+..+..|...|.+++.+|...+++++++| .|++||..+.  +.+.+.+|...|.+++|+| |.+.+++++-|+ |+
T Consensus        87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK  166 (794)
T KOG0276|consen   87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK  166 (794)
T ss_pred             ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence            88999999999999999999999999999999 9999998753  6678999999999999999 778999999999 99


Q ss_pred             EEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCee
Q psy11524        231 IFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQI  306 (323)
Q Consensus       231 iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l  306 (323)
                      +|.+.+..+..+  +.+|...|+++.+-+.|.  ..++..+..|..+++|+.++.    +..+|...|..+.|+|.-..+
T Consensus       167 VWslgs~~~nfT--l~gHekGVN~Vdyy~~gd--kpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpii  242 (794)
T KOG0276|consen  167 VWSLGSPHPNFT--LEGHEKGVNCVDYYTGGD--KPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPII  242 (794)
T ss_pred             EEEcCCCCCcee--eeccccCcceEEeccCCC--cceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEE
Confidence            999999888888  789999999999998762  136667777777777777664    677799999999999999999


Q ss_pred             EeeecCCeEEEEEe
Q psy11524        307 AGACANGSLLLGTI  320 (323)
Q Consensus       307 ~s~~~dg~i~~~~l  320 (323)
                      ++|+.||++++|+-
T Consensus       243 isgsEDGTvriWhs  256 (794)
T KOG0276|consen  243 ISGSEDGTVRIWNS  256 (794)
T ss_pred             EEecCCccEEEecC
Confidence            99999999999974

>KOG0313|consensus

Probab=99.97  E-value=1e-29  Score=198.88  Aligned_cols=263  Identities=16%  Similarity=0.180  Sum_probs=205.9

Q ss_pred             cccceeEeeEeccCCcceeeeeecccccccccee-------eec-CCCCCEEEEEEcCCCC---eEEEEeeCCeEEEEeC
Q psy11524         42 RYDGTVINYPISPYISVLHSYAASHSWPQALSLC-------RTL-NVSPPVYSAAWSPDSN---KVLLTQAKSLVIKPLS  110 (323)
Q Consensus        42 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~v~~~~~sp~~~---~l~~~~~~~~~v~~~~  110 (323)
                      -|++-|.++...  +    ..+.+|+||+..++|       ..+ +|.++|.+++|--...   .+++++.|+ .+++|.
T Consensus       103 ~hdDWVSsv~~~--~----~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dq-tl~Lw~  175 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--S----KWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQ-TLRLWK  175 (423)
T ss_pred             cchhhhhhhccc--C----ceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCc-eEEEEE
Confidence            477778787777  3    455666666555554       333 4999999888854333   588888875 787776


Q ss_pred             CCCc------eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC--------------------------CCe
Q psy11524        111 PNNK------ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD--------------------------GRQ  158 (323)
Q Consensus       111 ~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~--------------------------~~~  158 (323)
                      .+..      .....+|...|.+++..++|..+++|+.|..+.   +|+.+                          ..+
T Consensus       176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lk---iWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P  252 (423)
T KOG0313|consen  176 WNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLK---IWSVETDEEDELESSSNRRRKKQKREKEGGTRTP  252 (423)
T ss_pred             ecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceee---ecccCCCccccccccchhhhhhhhhhhcccccCc
Confidence            5543      333459999999999999999999999999999   99931                          123


Q ss_pred             eeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCC
Q psy11524        159 LYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISS  236 (323)
Q Consensus       159 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~  236 (323)
                      +..+.+|..+|.++.|++ ...+++++.| +|+.||+..............+.+++.+|..++|++|+.|. |++||.++
T Consensus       253 ~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~  331 (423)
T KOG0313|consen  253 LVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRT  331 (423)
T ss_pred             eEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCC
Confidence            556788999999999997 6678899998 99999987554443333567899999999999999999999 99999987


Q ss_pred             Cc-eeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----cCCCCccceeEEEEeeCCCeeEeee
Q psy11524        237 SS-SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----LDKPDTGSVYDLVWSSDATQIAGAC  310 (323)
Q Consensus       237 ~~-~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g~~l~s~~  310 (323)
                      +. .+...++.+|...|.++.|+|...   ..+..++.|+.+.+|+++..     ....|...|.++.|+ ++..+++|+
T Consensus       332 ~~gs~v~~s~~gH~nwVssvkwsp~~~---~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGG  407 (423)
T KOG0313|consen  332 GDGSVVSQSLIGHKNWVSSVKWSPTNE---FQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGG  407 (423)
T ss_pred             CCCceeEEeeecchhhhhheecCCCCc---eEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEecc
Confidence            53 222223889999999999999874   67777888888888888774     334578999999997 456899999


Q ss_pred             cCCeEEEEE
Q psy11524        311 ANGSLLLGT  319 (323)
Q Consensus       311 ~dg~i~~~~  319 (323)
                      .|.+|++++
T Consensus       408 aD~~l~i~~  416 (423)
T KOG0313|consen  408 ADNKLRIFK  416 (423)
T ss_pred             CcceEEEec
Confidence            999999986

>KOG0305|consensus

Probab=99.97  E-value=8.3e-30  Score=212.31  Aligned_cols=229  Identities=17%  Similarity=0.273  Sum_probs=194.8

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeec-cCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-C
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQA-HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-G  156 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~  156 (323)
                      .+.|+++.|+++|++|++|..+ |.|.+||....  ...+.. |...|.+++|.  +..+.+|+.++.|.   .+|++ .
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~-g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~---~~dvR~~  290 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSD-GTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKIL---NHDVRIS  290 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecC-CeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEE---EEEEecc
Confidence            8999999999999999998777 69999997654  667777 99999999998  67899999999999   99995 2


Q ss_pred             Ce-eeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCC-CeeeecCCCCccEEEEEEcC-CCCEEEEEe--cCc-E
Q psy11524        157 RQ-LYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVG-WSHSLDKPDTGSVYDLVWSN-DATQIAGAC--ANV-I  229 (323)
Q Consensus       157 ~~-~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~d~-i  229 (323)
                      +. ...+.+|...|..+.|++|+.++|+|+.| .+.|||... .....+..|.+.|..++|+| ....||+|+  .|+ |
T Consensus       291 ~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i  370 (484)
T KOG0305|consen  291 QHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCI  370 (484)
T ss_pred             hhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEE
Confidence            22 23478899999999999999999999997 999999854 45567778999999999999 566888865  477 9


Q ss_pred             EEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEE--EeCCCCeEEEecccc----cCCCCccceeEEEEeeCC
Q psy11524        230 HIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAF--IDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDA  303 (323)
Q Consensus       230 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~--~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g  303 (323)
                      ++||..+++.+..   ......|.++.|++..    +.+.+  +..++.+.+|.....    ...+|...|..+++||||
T Consensus       371 ~fwn~~~g~~i~~---vdtgsQVcsL~Wsk~~----kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg  443 (484)
T KOG0305|consen  371 KFWNTNTGARIDS---VDTGSQVCSLIWSKKY----KELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDG  443 (484)
T ss_pred             EEEEcCCCcEecc---cccCCceeeEEEcCCC----CEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCC
Confidence            9999999999886   5566789999999987    44443  345566788887654    667799999999999999


Q ss_pred             CeeEeeecCCeEEEEEeec
Q psy11524        304 TQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       304 ~~l~s~~~dg~i~~~~l~~  322 (323)
                      ..+++|+.|.++++|++.+
T Consensus       444 ~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  444 ETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             CEEEEecccCcEEeccccC
Confidence            9999999999999999865

>KOG0641|consensus

Probab=99.97  E-value=5.9e-28  Score=177.08  Aligned_cols=263  Identities=19%  Similarity=0.259  Sum_probs=205.4

Q ss_pred             cceeEeeEeccCCcceeeeeeccccccccce-----------------------e-eecCCCCCEEEEEEcCCCCeEEEE
Q psy11524         44 DGTVINYPISPYISVLHSYAASHSWPQALSL-----------------------C-RTLNVSPPVYSAAWSPDSNKVLLT   99 (323)
Q Consensus        44 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~-~~~~~~~~v~~~~~sp~~~~l~~~   99 (323)
                      .-.|.+++|.|.|...+    .|+..++.++                       + +.-.|.+.|+|.+|||+|+.|++|
T Consensus        32 sqairav~fhp~g~lya----vgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg  107 (350)
T KOG0641|consen   32 SQAIRAVAFHPAGGLYA----VGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG  107 (350)
T ss_pred             hhheeeEEecCCCceEE----eccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec
Confidence            44788999999995444    3332222222                       1 222278999999999999999999


Q ss_pred             eeCCeEEEEeCCCCc-------eeEeeccCCCeEEEEECCC----CCEEEEEcC-CCceEeeeEEeC-CCCeeeEeecCC
Q psy11524        100 QAKSLVIKPLSPNNK-------ATKWQAHDGLILKVAWCSS----TDLILSGGE-DCKYKASFVWDT-DGRQLYSSLTHD  166 (323)
Q Consensus       100 ~~~~~~v~~~~~~~~-------~~~~~~~~~~v~~~~~~~~----~~~l~~~~~-d~~i~~i~v~d~-~~~~~~~~~~~~  166 (323)
                      +.+. .|++...+..       ...+.-|.+.|..++|-.+    +..|++++. |..|+   +-|. +++....+.+|.
T Consensus       108 sndk-~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy---~tdc~~g~~~~a~sght  183 (350)
T KOG0641|consen  108 SNDK-TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIY---ITDCGRGQGFHALSGHT  183 (350)
T ss_pred             CCCc-eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEE---EeecCCCCcceeecCCc
Confidence            8875 7777644322       4567789999999999754    456666653 56666   7776 588889999999


Q ss_pred             CceeEEEEecCCCEEEEEeCC-eEEEEeCCC-CeeeecCC--C-----CccEEEEEEcCCCCEEEEEecCc-EEEEEcCC
Q psy11524        167 HPISSLAWAPGGDMFAVGSYN-TLRLCDKVG-WSHSLDKP--D-----TGSVYDLVWSNDATQIAGACANV-IHIFDISS  236 (323)
Q Consensus       167 ~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~-~~~~~~~~--~-----~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~  236 (323)
                      +.|.++ ++-+|-.|++|+.| +|++||++- .++..+..  |     ...|..++..|.|++|++|..|. ..+||++.
T Consensus       184 ghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg  262 (350)
T KOG0641|consen  184 GHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG  262 (350)
T ss_pred             ccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence            999877 23458899999998 999999883 34433221  1     24689999999999999999999 99999999


Q ss_pred             CceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc--------cCCCCccceeEEEEeeCCCeeEe
Q psy11524        237 SSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS--------LDKPDTGSVYDLVWSSDATQIAG  308 (323)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~s~~g~~l~s  308 (323)
                      +++++.  +..|...|+++.|+|..    .++..++.+..+++.++...        +...|...+..+.|+|..-.+++
T Consensus       263 ~r~iq~--f~phsadir~vrfsp~a----~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfis  336 (350)
T KOG0641|consen  263 GRMIQR--FHPHSADIRCVRFSPGA----HYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFIS  336 (350)
T ss_pred             Cceeee--eCCCccceeEEEeCCCc----eEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeee
Confidence            999999  89999999999999998    78888888888888877654        33457888899999999888999


Q ss_pred             eecCCeEEEEEee
Q psy11524        309 ACANGSLLLGTII  321 (323)
Q Consensus       309 ~~~dg~i~~~~l~  321 (323)
                      .+.|.++.+|.+.
T Consensus       337 ssadkt~tlwa~~  349 (350)
T KOG0641|consen  337 SSADKTATLWALN  349 (350)
T ss_pred             ccCcceEEEeccC
Confidence            9999999999864

>KOG0275|consensus

Probab=99.97  E-value=4.2e-30  Score=197.75  Aligned_cols=237  Identities=16%  Similarity=0.281  Sum_probs=204.2

Q ss_pred             cCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-ee---------EeeccCCCeEEEEECCCCCEEEEEcCCCceE
Q psy11524         78 LNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-AT---------KWQAHDGLILKVAWCSSTDLILSGGEDCKYK  147 (323)
Q Consensus        78 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  147 (323)
                      +...+.+.|..|||||++|++++-| |.|.+|+...+ ++         .+--+..+|.|+.|+.|...+|+|+.||.|+
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvD-GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK  288 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVD-GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK  288 (508)
T ss_pred             cccccchhheeeCCCCceEeecccc-ceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence            3457789999999999999998777 79999997654 11         2334678999999999999999999999999


Q ss_pred             eeeEEeCC-CCeeeEee-cCCCceeEEEEecCCCEEEEEeCC-eEEEEeCC-CCeeeecCCCCccEEEEEEcCCCCEEEE
Q psy11524        148 ASFVWDTD-GRQLYSSL-THDHPISSLAWAPGGDMFAVGSYN-TLRLCDKV-GWSHSLDKPDTGSVYDLVWSNDATQIAG  223 (323)
Q Consensus       148 ~i~v~d~~-~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~  223 (323)
                         +|.+. +.+++.+. .|...|+++.|+.|+..+++++.| ++++.-+. ++.+..+.+|.+.|+.+.|+++|.++++
T Consensus       289 ---vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iis  365 (508)
T KOG0275|consen  289 ---VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIIS  365 (508)
T ss_pred             ---EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEE
Confidence               99994 88888886 799999999999999999999998 99999987 6678889999999999999999999999


Q ss_pred             EecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccccc------CCCCccceeE
Q psy11524        224 ACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSL------DKPDTGSVYD  296 (323)
Q Consensus       224 ~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~~------~~~~~~~v~~  296 (323)
                      ++.|+ |++|+.++.+++.+++..+...+|.++..-|...   ..+.+++..+.+++.++...+      -+..++...+
T Consensus       366 aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnp---eh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~  442 (508)
T KOG0275|consen  366 ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNP---EHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFIN  442 (508)
T ss_pred             ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCC---ceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEE
Confidence            99999 9999999999999976677788999999988774   778888888888888876641      1112466778


Q ss_pred             EEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        297 LVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       297 ~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      ...||.|.++++.+.|+.++.+...
T Consensus       443 ~~lSpkGewiYcigED~vlYCF~~~  467 (508)
T KOG0275|consen  443 AILSPKGEWIYCIGEDGVLYCFSVL  467 (508)
T ss_pred             EEecCCCcEEEEEccCcEEEEEEee
Confidence            8899999999999999999998764

>KOG0292|consensus

Probab=99.97  E-value=7.5e-30  Score=219.11  Aligned_cols=236  Identities=17%  Similarity=0.206  Sum_probs=201.5

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-C
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-G  156 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~  156 (323)
                      .+..|..++|+|...+++++-.. |.|++||..-.  +..+..|.++|..++|+|++.++++|+.|-+|+   ||+.. .
T Consensus         8 kSsRvKglsFHP~rPwILtslHs-G~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIk---VWnYk~r   83 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHS-GVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIK---VWNYKTR   83 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecC-ceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEE---EEecccc
Confidence            56789999999999999987666 79999998765  778999999999999999999999999999999   99995 7


Q ss_pred             CeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCC-CCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEE
Q psy11524        157 RQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKV-GWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFD  233 (323)
Q Consensus       157 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd  233 (323)
                      +++.++.+|...|..+.|++.-.+++++++| +|+||+.. ..++..+.+|...|.|..|+|....++++|-|. |++||
T Consensus        84 rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWD  163 (1202)
T KOG0292|consen   84 RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWD  163 (1202)
T ss_pred             eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEe
Confidence            7888999999999999999999999999998 99999976 558889999999999999999999999999999 99999


Q ss_pred             cCC--------C-------------------ceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-
Q psy11524        234 ISS--------S-------------------SSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-  285 (323)
Q Consensus       234 ~~~--------~-------------------~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-  285 (323)
                      +..        +                   ..+-...+.+|...|+-++|+|.-    ..|..+..|..+++|..... 
T Consensus       164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl----pliVSG~DDRqVKlWrmnetK  239 (1202)
T KOG0292|consen  164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL----PLIVSGADDRQVKLWRMNETK  239 (1202)
T ss_pred             ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc----ceEEecCCcceeeEEEecccc
Confidence            632        1                   111122267899999999999986    44444555555555544432 


Q ss_pred             -----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeecC
Q psy11524        286 -----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQR  323 (323)
Q Consensus       286 -----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~~  323 (323)
                           +..+|...|.++-|+|...++++.+.|++|++|++..|
T Consensus       240 aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR  282 (1202)
T KOG0292|consen  240 AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR  282 (1202)
T ss_pred             ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence                 57889999999999999999999999999999998654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=2.5e-28  Score=225.50  Aligned_cols=229  Identities=15%  Similarity=0.143  Sum_probs=190.2

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc----------eeEeeccCCCeEEEEECC-CCCEEEEEcCCCceE
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK----------ATKWQAHDGLILKVAWCS-STDLILSGGEDCKYK  147 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~  147 (323)
                      .|...|.+++|+|+|+++|+|+.+ +.|++|+....          ...+ .+...+.+++|+| ++.+|++++.||+|+
T Consensus       481 ~~~~~V~~i~fs~dg~~latgg~D-~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v~  558 (793)
T PLN00181        481 NSSNLVCAIGFDRDGEFFATAGVN-KKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVVQ  558 (793)
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCC-CEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence            388999999999999999999877 59999986431          1122 3456789999987 478999999999999


Q ss_pred             eeeEEeCC-CCeeeEeecCCCceeEEEEec-CCCEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEc-CCCCEEE
Q psy11524        148 ASFVWDTD-GRQLYSSLTHDHPISSLAWAP-GGDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWS-NDATQIA  222 (323)
Q Consensus       148 ~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~-~~~~~l~  222 (323)
                         +||+. ++.+..+..|...|++++|+| ++.+|++++.| .|++||++.. ....+. +...+.++.|+ ++|.+|+
T Consensus       559 ---lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~g~~la  634 (793)
T PLN00181        559 ---VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-TKANICCVQFPSESGRSLA  634 (793)
T ss_pred             ---EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-cCCCeEEEEEeCCCCCEEE
Confidence               99996 667778889999999999997 78899999996 9999998754 444444 34678999995 5799999


Q ss_pred             EEecCc-EEEEEcCCCc-eeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----------cCCCC
Q psy11524        223 GACANV-IHIFDISSSS-SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----------LDKPD  290 (323)
Q Consensus       223 ~~~~d~-i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----------~~~~~  290 (323)
                      +|+.|+ |++||+++++ ++..  +.+|...|..+.|. ++    ..+++.+.++.+.+|++...          .+.+|
T Consensus       635 tgs~dg~I~iwD~~~~~~~~~~--~~~h~~~V~~v~f~-~~----~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh  707 (793)
T PLN00181        635 FGSADHKVYYYDLRNPKLPLCT--MIGHSKTVSYVRFV-DS----STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH  707 (793)
T ss_pred             EEeCCCeEEEEECCCCCccceE--ecCCCCCEEEEEEe-CC----CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC
Confidence            999999 9999998765 4555  67899999999997 44    67888888999999987531          34567


Q ss_pred             ccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        291 TGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       291 ~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      ...+..++|+|++++|++|+.|+.|++|+.
T Consensus       708 ~~~i~~v~~s~~~~~lasgs~D~~v~iw~~  737 (793)
T PLN00181        708 TNVKNFVGLSVSDGYIATGSETNEVFVYHK  737 (793)
T ss_pred             CCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence            888999999999999999999999999985

>KOG1407|consensus

Probab=99.97  E-value=2.8e-28  Score=182.03  Aligned_cols=267  Identities=11%  Similarity=0.207  Sum_probs=206.3

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeeccccccccceeeec-----------CCCCCEEEEEEcCCC-CeEEEEeeCCeE
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTL-----------NVSPPVYSAAWSPDS-NKVLLTQAKSLV  105 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~sp~~-~~l~~~~~~~~~  105 (323)
                      ..+++|...|.+++|+.+|    ..+++|+.|++..++...           .|.+.|-.++|+|.. ..+++++.++ .
T Consensus        14 r~~~~~~~~v~Sv~wn~~g----~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk-~   88 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDG----TKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDK-T   88 (313)
T ss_pred             HHhhhhhhcceEEEEcccC----ceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCc-e
Confidence            3456889999999999999    566777777666555332           288899999999854 5666666664 8


Q ss_pred             EEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEE
Q psy11524        106 IKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAV  183 (323)
Q Consensus       106 v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  183 (323)
                      |++||....  ........+. .-+.|+|+|+++++++.|..|.   ..|.+......-......+..++|+.++..|+.
T Consensus        89 ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it---~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Ffl  164 (313)
T KOG1407|consen   89 IRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRIT---FIDARTYKIVNEEQFKFEVNEISWNNSNDLFFL  164 (313)
T ss_pred             EEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEE---EEEecccceeehhcccceeeeeeecCCCCEEEE
Confidence            999987654  3334333333 4688999999999999999999   999976666555566777889999977776554


Q ss_pred             EeC-CeEEEEeCCC-CeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccC
Q psy11524        184 GSY-NTLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQT  260 (323)
Q Consensus       184 ~~~-~~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~  260 (323)
                      ... |.|.|..... +++..++.|+....|+.|+|+|+++|+|+.|. +.+||+..--+++.  +..+.-+|+.+.|+.+
T Consensus       165 t~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~--isRldwpVRTlSFS~d  242 (313)
T KOG1407|consen  165 TNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERC--ISRLDWPVRTLSFSHD  242 (313)
T ss_pred             ecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhhee--eccccCceEEEEeccC
Confidence            444 7898888553 46678889999999999999999999999999 99999998888887  7889999999999999


Q ss_pred             CC-----CccceEEEEeCCCCeEEEecccccCCCCccceeEEEEeeCCCeeEeeecC---------CeEEEEEee
Q psy11524        261 GS-----LQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACAN---------GSLLLGTII  321 (323)
Q Consensus       261 g~-----~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d---------g~i~~~~l~  321 (323)
                      |+     +.|..|-+.....+-++|++..      .++-..++|+|...+||-+.+|         |.++++-+.
T Consensus       243 g~~lASaSEDh~IDIA~vetGd~~~eI~~------~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  243 GRMLASASEDHFIDIAEVETGDRVWEIPC------EGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             cceeeccCccceEEeEecccCCeEEEeec------cCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence            94     4444444444455555565554      8889999999999999966654         567777553

>KOG0310|consensus

Probab=99.97  E-value=6.8e-29  Score=200.14  Aligned_cols=263  Identities=18%  Similarity=0.244  Sum_probs=207.0

Q ss_pred             cceeEeeEeccCCcceeeeeeccc-----cc-cccceeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--
Q psy11524         44 DGTVINYPISPYISVLHSYAASHS-----WP-QALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--  114 (323)
Q Consensus        44 ~~~v~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--  114 (323)
                      .+.|.++.|+|...  ..+..+++     ++ .+....+.+ .....|.++.|-.||+.+++| +..|.|+++|...+  
T Consensus        26 ~~~vssl~fsp~~P--~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaG-D~sG~V~vfD~k~r~i  102 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHP--YDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAG-DESGHVKVFDMKSRVI  102 (487)
T ss_pred             cCcceeEecCCCCC--CceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEcc-CCcCcEEEeccccHHH
Confidence            45789999999431  12222222     33 222333333 368899999999999988866 45589999997664  


Q ss_pred             eeEeeccCCCeEEEEECCC-CCEEEEEcCCCceEeeeEEeCCCCeee-EeecCCCceeEEEEecC-CCEEEEEeCC-eEE
Q psy11524        115 ATKWQAHDGLILKVAWCSS-TDLILSGGEDCKYKASFVWDTDGRQLY-SSLTHDHPISSLAWAPG-GDMFAVGSYN-TLR  190 (323)
Q Consensus       115 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~i~v~d~~~~~~~-~~~~~~~~v~~~~~~p~-~~~l~~~~~~-~i~  190 (323)
                      ++.+.+|..++..+.|+|+ +..+++|+.|+.++   +||+.+..+. .+.+|+..|.+.+|+|. +..+++|+.| .|+
T Consensus       103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k---~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr  179 (487)
T KOG0310|consen  103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVK---YWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR  179 (487)
T ss_pred             HHHHhhccCceeEEEecccCCeEEEecCCCceEE---EEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence            7789999999999999996 46788888899999   9999765553 67899999999999995 5578888887 999


Q ss_pred             EEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCcEEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEE
Q psy11524        191 LCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVA  269 (323)
Q Consensus       191 i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~  269 (323)
                      +||.+.. .......|..+|..+.+-|.|..+++++.+.+++||+-+|..+... ...|...|+|+.+..++    ..+.
T Consensus       180 l~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~-~~~H~KtVTcL~l~s~~----~rLl  254 (487)
T KOG0310|consen  180 LWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTS-MFNHNKTVTCLRLASDS----TRLL  254 (487)
T ss_pred             EEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhh-hhcccceEEEEEeecCC----ceEe
Confidence            9998855 4445556999999999999999999888666999999965544331 45599999999999988    7888


Q ss_pred             EEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEE
Q psy11524        270 FIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLG  318 (323)
Q Consensus       270 ~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~  318 (323)
                      .++.|+.+.++++...    ..+. .++|.+++.+|+++.++.|..||.+.+-
T Consensus       255 S~sLD~~VKVfd~t~~Kvv~s~~~-~~pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  255 SGSLDRHVKVFDTTNYKVVHSWKY-PGPVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             ecccccceEEEEccceEEEEeeec-ccceeeEEecCCCceEEEecccceeeee
Confidence            8888888888885443    2333 6899999999999999999999988764

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=7.3e-28  Score=207.33  Aligned_cols=197  Identities=12%  Similarity=0.200  Sum_probs=159.3

Q ss_pred             EeeccCCCeEEEEECC-CCCEEEEEcCCCceEeeeEEeCCC--------CeeeEeecCCCceeEEEEecCC-CEEEEEeC
Q psy11524        117 KWQAHDGLILKVAWCS-STDLILSGGEDCKYKASFVWDTDG--------RQLYSSLTHDHPISSLAWAPGG-DMFAVGSY  186 (323)
Q Consensus       117 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~i~v~d~~~--------~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~  186 (323)
                      .+.+|.+.|.+++|+| ++++|++++.|++|+   +||+..        ..+..+.+|...|.+++|+|++ .+|++++.
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk---IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~  146 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM---GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA  146 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE---EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC
Confidence            4678999999999999 889999999999999   999852        2456788899999999999975 68999998


Q ss_pred             C-eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccc-eEEEEEccCCC
Q psy11524        187 N-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHE-ITQLAVNQTGS  262 (323)
Q Consensus       187 ~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~-v~~~~~~p~g~  262 (323)
                      | .|++||+... ....+..|...|.+++|+|+|.+|++++.|+ |++||+++++.+.+  +..|... ...+.|.+++ 
T Consensus       147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~t--l~~H~~~~~~~~~w~~~~-  223 (493)
T PTZ00421        147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS--VEAHASAKSQRCLWAKRK-  223 (493)
T ss_pred             CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEE--EecCCCCcceEEEEcCCC-
Confidence            7 9999998754 5556777999999999999999999999999 99999999998877  5667654 4567888886 


Q ss_pred             CccceEEEEe----CCCCeEEEecccc-----cCCCC-ccceeEEEEeeCCCeeEeee-cCCeEEEEEeec
Q psy11524        263 LQERHVAFID----KNRDLYLSMWSHS-----LDKPD-TGSVYDLVWSSDATQIAGAC-ANGSLLLGTIIQ  322 (323)
Q Consensus       263 ~~d~~l~~~~----~~~~~~~~~~~~~-----~~~~~-~~~v~~~~~s~~g~~l~s~~-~dg~i~~~~l~~  322 (323)
                         +.+....    .++.+.+|++...     ....+ ...+....|++++++|++++ .|+.|++|++.+
T Consensus       224 ---~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~  291 (493)
T PTZ00421        224 ---DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN  291 (493)
T ss_pred             ---CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence               4444332    3567888887653     11111 34566678999999999887 599999999865

>KOG0296|consensus

Probab=99.97  E-value=2.2e-28  Score=190.61  Aligned_cols=239  Identities=13%  Similarity=0.139  Sum_probs=194.0

Q ss_pred             ecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC
Q psy11524         77 TLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT  154 (323)
Q Consensus        77 ~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~  154 (323)
                      ...|...|.+++.+|+.+++++|+.|+ .-++|+..+.  ...+.+|+..|.++.|+.||.+||+|+.+|.|+   ||..
T Consensus        60 F~~H~~svFavsl~P~~~l~aTGGgDD-~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~---v~~~  135 (399)
T KOG0296|consen   60 FDKHTDSVFAVSLHPNNNLVATGGGDD-LAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVL---VFKV  135 (399)
T ss_pred             hhhcCCceEEEEeCCCCceEEecCCCc-eEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEE---EEEc
Confidence            345999999999999999999998887 8899998876  778899999999999999999999999999999   9999


Q ss_pred             C-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCC-CeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EE
Q psy11524        155 D-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IH  230 (323)
Q Consensus       155 ~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~  230 (323)
                      . +.....+...-..+.=+.|+|.+..|++|+.| .+.+|.+.. ...+.+.+|..++++-.|.|+|+.++++..|+ |+
T Consensus       136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~  215 (399)
T KOG0296|consen  136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII  215 (399)
T ss_pred             ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence            5 66666776566778889999999999999996 999999886 57778899999999999999999999999999 99


Q ss_pred             EEEcCCCceeeeecCCCCccceEEEEEcc----------------------------C--CC------------------
Q psy11524        231 IFDISSSSSSNVTAPLSHSHEITQLAVNQ----------------------------T--GS------------------  262 (323)
Q Consensus       231 iwd~~~~~~~~~~~~~~~~~~v~~~~~~p----------------------------~--g~------------------  262 (323)
                      +||..+++++....-.. .....++.++.                            +  +.                  
T Consensus       216 ~Wn~ktg~p~~~~~~~e-~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~  294 (399)
T KOG0296|consen  216 VWNPKTGQPLHKITQAE-GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS  294 (399)
T ss_pred             EEecCCCceeEEecccc-cCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccc
Confidence            99999998887632101 00111111111                            1  00                  


Q ss_pred             -CccceEEEEeCCCCeEEEecccc---cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        263 -LQERHVAFIDKNRDLYLSMWSHS---LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       263 -~~d~~l~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                       +.-...+++..+|++.+|++...   ..-.|...|..+.|-+ ..+|++++.||.|+.|+..
T Consensus       295 ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaR  356 (399)
T KOG0296|consen  295 SSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDAR  356 (399)
T ss_pred             ccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeecc
Confidence             22245567788888999988775   2233688899999988 6799999999999999863

>KOG0772|consensus

Probab=99.97  E-value=5.1e-29  Score=202.23  Aligned_cols=273  Identities=15%  Similarity=0.225  Sum_probs=205.1

Q ss_pred             eeeeEeecccceeEeeEeccCCcceeeeeeccccccccceee------------ecC--CCCCEEEEEEcCCCCeEEEEe
Q psy11524         35 KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCR------------TLN--VSPPVYSAAWSPDSNKVLLTQ  100 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~--~~~~v~~~~~sp~~~~l~~~~  100 (323)
                      .....+++|...|.++.+.|.|    ..+++|++|-+.++|.            .+.  ....|.++.|++.|..|++.+
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~G----aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs  233 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPSG----ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS  233 (641)
T ss_pred             cceEeccCCceEEEEeeecCCC----ceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe
Confidence            3346789999999999999999    5667777666665553            333  457899999999999998887


Q ss_pred             eCCeEEEEeCCCCc--------------eeEeeccCCCeEEEEECCCC-CEEEEEcCCCceEeeeEEeCCC--CeeeEee
Q psy11524        101 AKSLVIKPLSPNNK--------------ATKWQAHDGLILKVAWCSST-DLILSGGEDCKYKASFVWDTDG--RQLYSSL  163 (323)
Q Consensus       101 ~~~~~v~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~i~v~d~~~--~~~~~~~  163 (323)
                      .. .+.+++|..+.              +...++|...+++.+|+|+. ..+++++.||+++   +||++.  +.+..+.
T Consensus       234 g~-aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlR---iWdv~~~k~q~qVik  309 (641)
T KOG0772|consen  234 GS-AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLR---IWDVNNTKSQLQVIK  309 (641)
T ss_pred             cC-cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEE---EEecCCchhheeEEe
Confidence            66 48888887654              12336789999999999975 5799999999999   999952  2333332


Q ss_pred             -----cCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCe----eeecCCCCc--cEEEEEEcCCCCEEEEEecCc-EE
Q psy11524        164 -----THDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWS----HSLDKPDTG--SVYDLVWSNDATQIAGACANV-IH  230 (323)
Q Consensus       164 -----~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~----~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~-i~  230 (323)
                           +..-++++++|+|||+.||+|+.| .|.+|+..+..    ......|..  .|++++||+||++|++-+.|+ ++
T Consensus       310 ~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK  389 (641)
T KOG0772|consen  310 TKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK  389 (641)
T ss_pred             eccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence                 233478999999999999999996 99999976542    234456766  899999999999999999999 99


Q ss_pred             EEEcCCC-ceeeeecCCCCccceEEEEEccCCCCccceEEEEe------CCCCeEEEecccc----cCCCCccceeEEEE
Q psy11524        231 IFDISSS-SSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFID------KNRDLYLSMWSHS----LDKPDTGSVYDLVW  299 (323)
Q Consensus       231 iwd~~~~-~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~------~~~~~~~~~~~~~----~~~~~~~~v~~~~~  299 (323)
                      +||++.. +++.+..-.....+-+.++|||+.    ..|..+.      ..+.+++++..+.    ........|..+.|
T Consensus       390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~----kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~W  465 (641)
T KOG0772|consen  390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD----KLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLW  465 (641)
T ss_pred             eeeccccccchhhhcCCCccCCCCccccCCCc----eEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEee
Confidence            9999975 455441122244567889999997    5555543      2233555554443    11123678999999


Q ss_pred             eeCCCeeEeeecCCeEEEEE
Q psy11524        300 SSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       300 s~~g~~l~s~~~dg~i~~~~  319 (323)
                      +|.-+.|..|+.||.+++|-
T Consensus       466 hpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  466 HPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             cchhhheeeecCCCceEEEE
Confidence            99999999999999999974

>KOG0640|consensus

Probab=99.97  E-value=1.1e-28  Score=188.79  Aligned_cols=271  Identities=15%  Similarity=0.171  Sum_probs=206.1

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeeccccccccce--------------------------eeec-CCCCCEEEEEEc
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSL--------------------------CRTL-NVSPPVYSAAWS   90 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~-~~~~~v~~~~~s   90 (323)
                      ..+..|+.++.+.+|+|||..++    +|+-|..+++                          .+++ .|.++|+++.|+
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvA----TGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH  181 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVA----TGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH  181 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEE----ccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence            45778999999999999995554    4443332222                          2233 489999999999


Q ss_pred             CCCCeEEEEeeCCeEEEEeCCCCc----eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeE----e
Q psy11524         91 PDSNKVLLTQAKSLVIKPLSPNNK----ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYS----S  162 (323)
Q Consensus        91 p~~~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~----~  162 (323)
                      |....|++++.| +.|+++|..+.    .........+|.++.|+|.|.+|+.|..-.+++   +||++.-+...    -
T Consensus       182 Pre~ILiS~srD-~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~r---lYdv~T~QcfvsanPd  257 (430)
T KOG0640|consen  182 PRETILISGSRD-NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLR---LYDVNTYQCFVSANPD  257 (430)
T ss_pred             chhheEEeccCC-CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCcee---EEeccceeEeeecCcc
Confidence            999999998877 59999998765    222334567899999999999999999999999   99997443322    2


Q ss_pred             ecCCCceeEEEEecCCCEEEEEeCC-eEEEEe-CCCCeeeec-CCCC-ccEEEEEEcCCCCEEEEEecCc-EEEEEcCCC
Q psy11524        163 LTHDHPISSLAWAPGGDMFAVGSYN-TLRLCD-KVGWSHSLD-KPDT-GSVYDLVWSNDATQIAGACANV-IHIFDISSS  237 (323)
Q Consensus       163 ~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d-~~~~~~~~~-~~~~-~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~  237 (323)
                      ..|.+.|+++.+++.|++.++++.| .|++|| +.++++..+ ..|. ..|.++.|..+|+|+++.+.|. +++|.+.++
T Consensus       258 ~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~  337 (430)
T KOG0640|consen  258 DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG  337 (430)
T ss_pred             cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence            4588899999999999999999996 999999 667766644 3454 4699999999999999999999 999999999


Q ss_pred             ceeeeecCCCCcc---ceEEEEEccCCCCccceEEEEeC-CCCeEEEecccc-----cCCCCccceeEEEEeeCCCeeEe
Q psy11524        238 SSSNVTAPLSHSH---EITQLAVNQTGSLQERHVAFIDK-NRDLYLSMWSHS-----LDKPDTGSVYDLVWSSDATQIAG  308 (323)
Q Consensus       238 ~~~~~~~~~~~~~---~v~~~~~~p~g~~~d~~l~~~~~-~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g~~l~s  308 (323)
                      +++.++.-.+..+   --+...|+...    .++.+-|. .+.++-|+.+..     ..-+|.+.+..+.-||.+..+++
T Consensus       338 R~l~~YtGAg~tgrq~~rtqAvFNhtE----dyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmT  413 (430)
T KOG0640|consen  338 RMLKEYTGAGTTGRQKHRTQAVFNHTE----DYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMT  413 (430)
T ss_pred             ceEEEEecCCcccchhhhhhhhhcCcc----ceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceee
Confidence            9998842222111   12334455544    34444333 234555555543     33457999999999999999999


Q ss_pred             eecCCeEEEEEe
Q psy11524        309 ACANGSLLLGTI  320 (323)
Q Consensus       309 ~~~dg~i~~~~l  320 (323)
                      |++|-++++|.-
T Consensus       414 csdD~raRFWyr  425 (430)
T KOG0640|consen  414 CSDDFRARFWYR  425 (430)
T ss_pred             ecccceeeeeee
Confidence            999999999963

>KOG0281|consensus

Probab=99.97  E-value=1.2e-29  Score=196.70  Aligned_cols=252  Identities=11%  Similarity=0.155  Sum_probs=206.9

Q ss_pred             ccceeEeeEeccCCcceeeeeecccccccccee--------eec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCC
Q psy11524         43 YDGTVINYPISPYISVLHSYAASHSWPQALSLC--------RTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN  113 (323)
Q Consensus        43 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~  113 (323)
                      ....|+++.+..+.      ..+|.-|.+.++|        +.+ +|++.|.|+.|.  .+.+++|+.| .+|++||.++
T Consensus       196 ~skgVYClQYDD~k------iVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSD-sTvrvWDv~t  266 (499)
T KOG0281|consen  196 NSKGVYCLQYDDEK------IVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSD-STVRVWDVNT  266 (499)
T ss_pred             cCCceEEEEecchh------hhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCC-ceEEEEeccC
Confidence            45678888876432      4455444444444        333 499999999995  4577777777 5999999877


Q ss_pred             c--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC----CeeeEeecCCCceeEEEEecCCCEEEEEeCC
Q psy11524        114 K--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG----RQLYSSLTHDHPISSLAWAPGGDMFAVGSYN  187 (323)
Q Consensus       114 ~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~----~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~  187 (323)
                      +  +.++..|...|..+.|+.  .++++++.|.++.   +||+..    .....+.+|...|+.+.|+  .+++++++.|
T Consensus       267 ge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsia---VWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgD  339 (499)
T KOG0281|consen  267 GEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIA---VWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGD  339 (499)
T ss_pred             CchhhHHhhhcceeEEEEEeC--CEEEEecCCceeE---EEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCC
Confidence            6  778889999999999984  5999999999999   999953    2345567899999999996  5699999998


Q ss_pred             -eEEEEeCCC-CeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCc
Q psy11524        188 -TLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQ  264 (323)
Q Consensus       188 -~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~  264 (323)
                       +|++|+..+ ..+..+.+|...|.|+.+  .|+++++|+.|. |++||+..|.++..  +.+|..-|+++.|..     
T Consensus       340 RTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRv--LeGHEeLvRciRFd~-----  410 (499)
T KOG0281|consen  340 RTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV--LEGHEELVRCIRFDN-----  410 (499)
T ss_pred             ceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHH--HhchHHhhhheeecC-----
Confidence             999999875 567788899999998877  588999999999 99999999999998  899999999999975     


Q ss_pred             cceEEEEeCCCCeEEEecccc-------------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        265 ERHVAFIDKNRDLYLSMWSHS-------------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       265 d~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                       +.|..+..+|++++|++...             ....|.+.|..+.|  |...+++++.|.+|.+|++.+
T Consensus       411 -krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~  478 (499)
T KOG0281|consen  411 -KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLN  478 (499)
T ss_pred             -ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCC
Confidence             57888999999999998775             22246789999999  667899999999999999865

>KOG0278|consensus

Probab=99.97  E-value=3.1e-29  Score=186.16  Aligned_cols=267  Identities=16%  Similarity=0.197  Sum_probs=212.2

Q ss_pred             cccceeeccCCcC-cccccCcchhccee------eeeeEeecccceeEeeEeccCCcceeeeeec---cccc-cccceee
Q psy11524          8 VKMGKSRYGLGMD-YLELLSYPEVLRFV------KNHLTIRRYDGTVINYPISPYISVLHSYAAS---HSWP-QALSLCR   76 (323)
Q Consensus         8 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~   76 (323)
                      +.+.-.|....++ |.....+.+....+      ...-+++||++.|++..+..+....++..++   ..|| -++..+.
T Consensus        16 pvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelh   95 (334)
T KOG0278|consen   16 PVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELH   95 (334)
T ss_pred             ceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhh
Confidence            3444445555554 43333333333333      3356899999999999998876433333332   1465 4555667


Q ss_pred             ecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc---eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEe
Q psy11524         77 TLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK---ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWD  153 (323)
Q Consensus        77 ~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d  153 (323)
                      .++|..-|.+++|+.|.++|++|+.+. .++++|++..   ...+.+|++.|..+.|....+.+++...|++|+   +||
T Consensus        96 sf~hkhivk~~af~~ds~~lltgg~ek-llrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVR---LWD  171 (334)
T KOG0278|consen   96 SFEHKHIVKAVAFSQDSNYLLTGGQEK-LLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVR---LWD  171 (334)
T ss_pred             hhhhhheeeeEEecccchhhhccchHH-HhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceE---EEE
Confidence            788999999999999999999998875 8999998765   667889999999999999888999999999999   999


Q ss_pred             CC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEE
Q psy11524        154 TD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHI  231 (323)
Q Consensus       154 ~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~i  231 (323)
                      .. +..+..+. .+.+|+++.++++|+++.++....|.+||.....+......+..|.+.+.+|+...+++|++|. ++.
T Consensus       172 ~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~k  250 (334)
T KOG0278|consen  172 HRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYK  250 (334)
T ss_pred             eccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEE
Confidence            96 55555554 6788999999999998887766799999998765544444677899999999999999999999 999


Q ss_pred             EEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        232 FDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       232 wd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      ||..+++.+..+ ..+|.++|.++.|+|+|    ...++++.||.+++|....
T Consensus       251 fDy~TgeEi~~~-nkgh~gpVhcVrFSPdG----E~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  251 FDYNTGEEIGSY-NKGHFGPVHCVRFSPDG----ELYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             EeccCCceeeec-ccCCCCceEEEEECCCC----ceeeccCCCceEEEEEecC
Confidence            999999988873 37899999999999999    7888999999999998755

>KOG0282|consensus

Probab=99.97  E-value=7.6e-30  Score=205.36  Aligned_cols=233  Identities=14%  Similarity=0.219  Sum_probs=188.4

Q ss_pred             CCCCCEEEEEEcC-CCCeEEEEeeCCeEEEEeCCCC---ceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC
Q psy11524         79 NVSPPVYSAAWSP-DSNKVLLTQAKSLVIKPLSPNN---KATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT  154 (323)
Q Consensus        79 ~~~~~v~~~~~sp-~~~~l~~~~~~~~~v~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~  154 (323)
                      +|...|.++.|.| .+.+|++++.| +.|++|+.-.   .++++.+|..+|.+++|+++|..+++++.|+.++   +||+
T Consensus       212 gH~kgvsai~~fp~~~hLlLS~gmD-~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK---lwDt  287 (503)
T KOG0282|consen  212 GHTKGVSAIQWFPKKGHLLLSGGMD-GLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK---LWDT  287 (503)
T ss_pred             CCccccchhhhccceeeEEEecCCC-ceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee---eecc
Confidence            3999999999999 77777777666 6999998654   3888999999999999999999999999999999   9999


Q ss_pred             CCCeeeEeecCCCceeEEEEecCC-CEEEEEeCC-eEEEEeCCCCee-eecCCCCccEEEEEEcCCCCEEEEEecCc-EE
Q psy11524        155 DGRQLYSSLTHDHPISSLAWAPGG-DMFAVGSYN-TLRLCDKVGWSH-SLDKPDTGSVYDLVWSNDATQIAGACANV-IH  230 (323)
Q Consensus       155 ~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~~-~i~i~d~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~  230 (323)
                      +...+..-......++++.|+|++ +.|++|+.+ .|+.||++...+ +....|-+.|..+.|-++|+++++.++|+ ++
T Consensus       288 ETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~r  367 (503)
T KOG0282|consen  288 ETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVR  367 (503)
T ss_pred             ccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEE
Confidence            754444444456778999999988 677888776 999999996644 34555778999999999999999999999 99


Q ss_pred             EEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-------cCCCCc--cceeEEEEee
Q psy11524        231 IFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-------LDKPDT--GSVYDLVWSS  301 (323)
Q Consensus       231 iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-------~~~~~~--~~v~~~~~s~  301 (323)
                      ||+.+...++..+ .........++..+|++    +.++.-+.++.+.++.....       .+++|.  +.-..+.|||
T Consensus       368 iWe~~~~v~ik~i-~~~~~hsmP~~~~~P~~----~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp  442 (503)
T KOG0282|consen  368 IWENRIPVPIKNI-ADPEMHTMPCLTLHPNG----KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP  442 (503)
T ss_pred             EEEcCCCccchhh-cchhhccCcceecCCCC----CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence            9999988777652 33344567788999998    55555555555555543332       455553  5678899999


Q ss_pred             CCCeeEeeecCCeEEEEEe
Q psy11524        302 DATQIAGACANGSLLLGTI  320 (323)
Q Consensus       302 ~g~~l~s~~~dg~i~~~~l  320 (323)
                      ||++|++|+.||.+.+|+.
T Consensus       443 DG~~l~SGdsdG~v~~wdw  461 (503)
T KOG0282|consen  443 DGRTLCSGDSDGKVNFWDW  461 (503)
T ss_pred             CCCeEEeecCCccEEEeec
Confidence            9999999999999999985

>KOG0319|consensus

Probab=99.97  E-value=2.2e-28  Score=206.27  Aligned_cols=233  Identities=17%  Similarity=0.124  Sum_probs=204.3

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeeccccccccceeee-------------cCCCCCEEEEEEcCCCC-eEEEEeeCC
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRT-------------LNVSPPVYSAAWSPDSN-KVLLTQAKS  103 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~sp~~~-~l~~~~~~~  103 (323)
                      +.+.||++.|.++....+|    .++++++-|++..+|+.             -.|.+.|.+++++..+. ++++++.| 
T Consensus       359 ~ii~GH~e~vlSL~~~~~g----~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D-  433 (775)
T KOG0319|consen  359 QIIPGHTEAVLSLDVWSSG----DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQD-  433 (775)
T ss_pred             EEEeCchhheeeeeecccC----cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCC-
Confidence            4789999999999977777    67888888888888854             12999999999988765 55555555 


Q ss_pred             eEEEEeCCCCc-------ee----EeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeE
Q psy11524        104 LVIKPLSPNNK-------AT----KWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISS  171 (323)
Q Consensus       104 ~~v~~~~~~~~-------~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~  171 (323)
                      ..+++|++...       ..    ....|...|++++.+|+.+++|||+.|.+.+   +|+++ ......+.+|...|.+
T Consensus       434 ~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaK---iW~le~~~l~~vLsGH~RGvw~  510 (775)
T KOG0319|consen  434 CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAK---IWDLEQLRLLGVLSGHTRGVWC  510 (775)
T ss_pred             ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccccccee---eecccCceEEEEeeCCccceEE
Confidence            79999998761       11    3357999999999999999999999999999   99996 6777889999999999


Q ss_pred             EEEecCCCEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCC
Q psy11524        172 LAWAPGGDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSH  248 (323)
Q Consensus       172 ~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~  248 (323)
                      +.|+|..+.+++++.| +|+||.+.+. +...+.+|...|..+.|-.+|+.|++++.|| |++|++++++++.+  +..|
T Consensus       511 V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~t--lD~H  588 (775)
T KOG0319|consen  511 VSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMT--LDAH  588 (775)
T ss_pred             EEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhh--hhhc
Confidence            9999999999999998 9999999864 7789999999999999999999999999999 99999999999999  8999


Q ss_pred             ccceEEEEEccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        249 SHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       249 ~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      ...|++++.+|..    ..+..++.|+.+.+|.-.+
T Consensus       589 ~DrvWaL~~~~~~----~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  589 NDRVWALSVSPLL----DMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             cceeEEEeecCcc----ceeEecCCCeEEEEeecCc
Confidence            9999999999998    6888889999998886544

>KOG0316|consensus

Probab=99.97  E-value=7.4e-28  Score=177.35  Aligned_cols=263  Identities=17%  Similarity=0.153  Sum_probs=214.4

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeeccccccccceeeecC---------CCCCEEEEEEcCCCCeEEEEeeCCeEEEE
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLN---------VSPPVYSAAWSPDSNKVLLTQAKSLVIKP  108 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~sp~~~~l~~~~~~~~~v~~  108 (323)
                      ..+..++++|..+.|+-||    .|..+..-|++.++|..+.         |...|..++.+.|+..+++++.|. .+.+
T Consensus        11 ~~l~~~qgaV~avryN~dG----nY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk-~v~v   85 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDG----NYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDK-AVQV   85 (307)
T ss_pred             eeecccccceEEEEEccCC----CEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCc-eEEE
Confidence            4578999999999999999    5666666677777765443         889999999999999999999885 9999


Q ss_pred             eCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC---CCeeeEeecCCCceeEEEEecCCCEEEE
Q psy11524        109 LSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD---GRQLYSSLTHDHPISSLAWAPGGDMFAV  183 (323)
Q Consensus       109 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~---~~~~~~~~~~~~~v~~~~~~p~~~~l~~  183 (323)
                      ||.++.  .+.+.+|.+.|+.++|+.+...+++|+.|.+++   +||.+   .++++.+......|.++..+  +..|++
T Consensus        86 wDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r---~wDCRS~s~ePiQildea~D~V~Si~v~--~heIva  160 (307)
T KOG0316|consen   86 WDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVR---LWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVA  160 (307)
T ss_pred             EEcccCeeeeecccccceeeEEEecCcceEEEeccccceeE---EEEcccCCCCccchhhhhcCceeEEEec--ccEEEe
Confidence            998876  788999999999999999999999999999999   99985   46667777778889999886  667888


Q ss_pred             EeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEE--EEEcc
Q psy11524        184 GSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQ--LAVNQ  259 (323)
Q Consensus       184 ~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~--~~~~p  259 (323)
                      |+.| +++.||++........ ...+|++++|+++++..+.++-|+ +++.|-.+|+.+..  ..+|...-..  .+++.
T Consensus       161 GS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s--YkGhkn~eykldc~l~q  237 (307)
T KOG0316|consen  161 GSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS--YKGHKNMEYKLDCCLNQ  237 (307)
T ss_pred             eccCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHH--hcccccceeeeeeeecc
Confidence            8886 9999999865544332 456899999999999999999999 99999999999998  6777654433  34554


Q ss_pred             CCCCccceEEEEeCCCCeEEEecccc----cCCCCccc-eeEEEEeeCCCeeEeeecCCeEEEE
Q psy11524        260 TGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGS-VYDLVWSSDATQIAGACANGSLLLG  318 (323)
Q Consensus       260 ~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~-v~~~~~s~~g~~l~s~~~dg~i~~~  318 (323)
                      ..    ..+..++.+|.+++|++...    ....|... |.+++++|.-.-++++...+ +.+|
T Consensus       238 sd----thV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~  296 (307)
T KOG0316|consen  238 SD----THVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFW  296 (307)
T ss_pred             cc----eeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc-eece
Confidence            43    78888999999999998765    22334444 89999999988777776444 4444

>KOG0281|consensus

Probab=99.97  E-value=3.2e-29  Score=194.42  Aligned_cols=233  Identities=18%  Similarity=0.244  Sum_probs=198.8

Q ss_pred             ccccccceeeecC----CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEE
Q psy11524         67 SWPQALSLCRTLN----VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSG  140 (323)
Q Consensus        67 ~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~  140 (323)
                      .|.....+.+.+.    ....|+|+.+.  ...+++|..|+ +|++||.+..  ...+.+|.+.|.|+.|.  .+.+++|
T Consensus       179 NWr~Gr~~~~rinc~Se~skgVYClQYD--D~kiVSGlrDn-TikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisG  253 (499)
T KOG0281|consen  179 NWRCGRHLLQRINCRSENSKGVYCLQYD--DEKIVSGLRDN-TIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSG  253 (499)
T ss_pred             chhccceeeeeecCCcccCCceEEEEec--chhhhcccccC-ceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEec
Confidence            3544444444443    46789999995  55678887775 9999998876  67889999999999985  5699999


Q ss_pred             cCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC----eeeecCCCCccEEEEEE
Q psy11524        141 GEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW----SHSLDKPDTGSVYDLVW  214 (323)
Q Consensus       141 ~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~----~~~~~~~~~~~v~~~~~  214 (323)
                      +.|.+|+   +||.+ ++++.++.+|...|..+.|+  +.++++++.| ++.+||+...    ....+.+|...|..+.|
T Consensus       254 SSDsTvr---vWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf  328 (499)
T KOG0281|consen  254 SSDSTVR---VWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF  328 (499)
T ss_pred             CCCceEE---EEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc
Confidence            9999999   99995 78888999999999999998  4589999998 9999998754    23367789999999999


Q ss_pred             cCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCC
Q psy11524        215 SNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKP  289 (323)
Q Consensus       215 ~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~  289 (323)
                      +  .+++++++.|. |++|++.+++.+.+  +.+|...|.++.+.  +    +.+..++.+..+++|++..+    +.++
T Consensus       329 d--~kyIVsASgDRTikvW~~st~efvRt--l~gHkRGIAClQYr--~----rlvVSGSSDntIRlwdi~~G~cLRvLeG  398 (499)
T KOG0281|consen  329 D--DKYIVSASGDRTIKVWSTSTCEFVRT--LNGHKRGIACLQYR--D----RLVVSGSSDNTIRLWDIECGACLRVLEG  398 (499)
T ss_pred             c--cceEEEecCCceEEEEeccceeeehh--hhcccccceehhcc--C----eEEEecCCCceEEEEeccccHHHHHHhc
Confidence            6  45999999999 99999999999999  89999999888764  3    78888999999999999887    7888


Q ss_pred             CccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        290 DTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       290 ~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      |++-|.++.|  |.+.+++|+.||+|++|++.
T Consensus       399 HEeLvRciRF--d~krIVSGaYDGkikvWdl~  428 (499)
T KOG0281|consen  399 HEELVRCIRF--DNKRIVSGAYDGKIKVWDLQ  428 (499)
T ss_pred             hHHhhhheee--cCceeeeccccceEEEEecc
Confidence            9999999999  77899999999999999985

>KOG1446|consensus

Probab=99.96  E-value=1.2e-26  Score=177.97  Aligned_cols=233  Identities=13%  Similarity=0.116  Sum_probs=186.2

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcC--CCceEeeeEEeC-
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGE--DCKYKASFVWDT-  154 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~i~v~d~-  154 (323)
                      ....|+++.|+++|.++++++.++ .+++||....  ..++..++-.+..++|....+.++.++.  |.+|+   ..++ 
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dD-sl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr---yLsl~   88 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDD-SLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR---YLSLH   88 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCC-eEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE---EEEee
Confidence            478999999999999999988886 9999998765  6677777778999999877777776665  88999   9998 


Q ss_pred             CCCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEE
Q psy11524        155 DGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIF  232 (323)
Q Consensus       155 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iw  232 (323)
                      +++.++.+.+|...|.+++.+|-+..+++++.| +|++||++....+-.. +...-..++|+|.|-++|++.... |++|
T Consensus        89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l-~~~~~pi~AfDp~GLifA~~~~~~~IkLy  167 (311)
T KOG1446|consen   89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL-NLSGRPIAAFDPEGLIFALANGSELIKLY  167 (311)
T ss_pred             cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE-ecCCCcceeECCCCcEEEEecCCCeEEEE
Confidence            588899999999999999999988999999998 9999999954333222 223345678999999999999988 9999


Q ss_pred             EcCCC--ceeeeecCC-CCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCC---ccceeEEEEeeC
Q psy11524        233 DISSS--SSSNVTAPL-SHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPD---TGSVYDLVWSSD  302 (323)
Q Consensus       233 d~~~~--~~~~~~~~~-~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~---~~~v~~~~~s~~  302 (323)
                      |+++-  .+-.++.+. +.....+.+.|||+|    +.|.+....+.+++.+.-.+    .+..+   ..--.+.+|+||
T Consensus       168 D~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG----K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd  243 (311)
T KOG1446|consen  168 DLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG----KSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD  243 (311)
T ss_pred             EecccCCCCceeEccCCCCccceeeeEEcCCC----CEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC
Confidence            99864  344443233 446688999999999    88888888888777766554    11111   112267889999


Q ss_pred             CCeeEeeecCCeEEEEEee
Q psy11524        303 ATQIAGACANGSLLLGTII  321 (323)
Q Consensus       303 g~~l~s~~~dg~i~~~~l~  321 (323)
                      |+++++|+.||+|++|++.
T Consensus       244 s~Fvl~gs~dg~i~vw~~~  262 (311)
T KOG1446|consen  244 SKFVLSGSDDGTIHVWNLE  262 (311)
T ss_pred             CcEEEEecCCCcEEEEEcC
Confidence            9999999999999999974

>KOG0264|consensus

Probab=99.96  E-value=8.2e-28  Score=192.36  Aligned_cols=242  Identities=17%  Similarity=0.276  Sum_probs=198.6

Q ss_pred             cceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc------------eeEeeccCCCeEEEEECCC-CCEEE
Q psy11524         72 LSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK------------ATKWQAHDGLILKVAWCSS-TDLIL  138 (323)
Q Consensus        72 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~------------~~~~~~~~~~v~~~~~~~~-~~~l~  138 (323)
                      .++.+.+.|.+.|+.+.+-|+...|+++....+.+++||..+.            -..+.+|...-.+++|++. .-.|+
T Consensus       115 v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Ll  194 (422)
T KOG0264|consen  115 VEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLL  194 (422)
T ss_pred             eEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEe
Confidence            3445567799999999999999988887777788999986543            1267889887789999995 45789


Q ss_pred             EEcCCCceEeeeEEeCCC--------CeeeEeecCCCceeEEEEec-CCCEEEEEeCC-eEEEEeCCC--C-eeeecCCC
Q psy11524        139 SGGEDCKYKASFVWDTDG--------RQLYSSLTHDHPISSLAWAP-GGDMFAVGSYN-TLRLCDKVG--W-SHSLDKPD  205 (323)
Q Consensus       139 ~~~~d~~i~~i~v~d~~~--------~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~~-~i~i~d~~~--~-~~~~~~~~  205 (323)
                      +++.|++|.   +||++.        .....+.+|...|..++|+| +..+|+++++| .+.|||++.  . ......+|
T Consensus       195 s~~~d~~i~---lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah  271 (422)
T KOG0264|consen  195 SGSDDHTIC---LWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH  271 (422)
T ss_pred             eccCCCcEE---EEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccccc
Confidence            999999999   999941        23456788999999999999 45678888887 999999884  2 33456779


Q ss_pred             CccEEEEEEcC-CCCEEEEEecCc-EEEEEcCCCc-eeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEec
Q psy11524        206 TGSVYDLVWSN-DATQIAGACANV-IHIFDISSSS-SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMW  282 (323)
Q Consensus       206 ~~~v~~~~~~~-~~~~l~~~~~d~-i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~  282 (323)
                      .+.+.|++|+| ++..||+|+.|+ |.+||+++-. ++.+  +.+|...|..+.|+|+..   ..+++...++.+.+|++
T Consensus       272 ~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~--~e~H~dev~~V~WSPh~e---tvLASSg~D~rl~vWDl  346 (422)
T KOG0264|consen  272 SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHT--FEGHEDEVFQVEWSPHNE---TVLASSGTDRRLNVWDL  346 (422)
T ss_pred             CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCcee--ccCCCcceEEEEeCCCCC---ceeEecccCCcEEEEec
Confidence            99999999999 667889999999 9999999754 4555  899999999999999873   67777778888888887


Q ss_pred             ccc------------------cCCCCccceeEEEEeeCCC-eeEeeecCCeEEEEEee
Q psy11524        283 SHS------------------LDKPDTGSVYDLVWSSDAT-QIAGACANGSLLLGTII  321 (323)
Q Consensus       283 ~~~------------------~~~~~~~~v~~~~~s~~g~-~l~s~~~dg~i~~~~l~  321 (323)
                      ...                  ++.+|...|..++|+|+.. .++++++|+.+.||+..
T Consensus       347 s~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  347 SRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             cccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            542                  5667899999999999987 56699999999999875

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=2.3e-26  Score=199.11  Aligned_cols=210  Identities=14%  Similarity=0.176  Sum_probs=159.8

Q ss_pred             CeEEEEeCCCCc--eeEeeccCCCeEEEEECCC-CCEEEEEcCCCceEeeeEEeCCC-C--------eeeEeecCCCcee
Q psy11524        103 SLVIKPLSPNNK--ATKWQAHDGLILKVAWCSS-TDLILSGGEDCKYKASFVWDTDG-R--------QLYSSLTHDHPIS  170 (323)
Q Consensus       103 ~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~i~v~d~~~-~--------~~~~~~~~~~~v~  170 (323)
                      .+.+.+|+....  +..+.+|.+.|.+++|+|+ +.+|++|+.|++|+   +||+.. .        .+..+.+|...|.
T Consensus        53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIr---IWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIR---VWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEE---EEECCCCCccccccccceEEeecCCCcEE
Confidence            368899987654  6678899999999999996 78999999999999   999852 1        2345678999999


Q ss_pred             EEEEecCCCEE-EEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCC
Q psy11524        171 SLAWAPGGDMF-AVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLS  247 (323)
Q Consensus       171 ~~~~~p~~~~l-~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~  247 (323)
                      +++|+|++..+ ++++.| .|++||++.........+...|.+++|+|+|.+|++++.|+ |+|||+++++.+.+  +.+
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t--l~g  207 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS--FHI  207 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE--Eec
Confidence            99999998764 677776 99999998654332223667899999999999999999999 99999999998887  677


Q ss_pred             CccceEE-----EEEccCCCCccceEEEEeCCC----CeEEEecccc-----c--CCCCccceeEEEEeeCCCeeEeeec
Q psy11524        248 HSHEITQ-----LAVNQTGSLQERHVAFIDKNR----DLYLSMWSHS-----L--DKPDTGSVYDLVWSSDATQIAGACA  311 (323)
Q Consensus       248 ~~~~v~~-----~~~~p~g~~~d~~l~~~~~~~----~~~~~~~~~~-----~--~~~~~~~v~~~~~s~~g~~l~s~~~  311 (323)
                      |.+.+..     ..|++++    +.|.+...++    .+.+|++...     .  ...+.+.+......++|.++++|+.
T Consensus       208 H~g~~~s~~v~~~~fs~d~----~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG  283 (568)
T PTZ00420        208 HDGGKNTKNIWIDGLGGDD----NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG  283 (568)
T ss_pred             ccCCceeEEEEeeeEcCCC----CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence            7765433     3345776    6666655443    5888888752     1  1111222333333456888999999


Q ss_pred             CCeEEEEEee
Q psy11524        312 NGSLLLGTII  321 (323)
Q Consensus       312 dg~i~~~~l~  321 (323)
                      |+.|++|++.
T Consensus       284 D~tIr~~e~~  293 (568)
T PTZ00420        284 DGNCRYYQHS  293 (568)
T ss_pred             CCeEEEEEcc
Confidence            9999999984

>KOG1407|consensus

Probab=99.96  E-value=7.5e-27  Score=174.46  Aligned_cols=233  Identities=16%  Similarity=0.220  Sum_probs=197.4

Q ss_pred             cCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc----eeEeeccCCCeEEEEECC-CCCEEEEEcCCCceEeeeEE
Q psy11524         78 LNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK----ATKWQAHDGLILKVAWCS-STDLILSGGEDCKYKASFVW  152 (323)
Q Consensus        78 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~i~v~  152 (323)
                      ..|...|.+++|+-+|..|+.++.+. .+.+|+....    .....+|.+.|..++|+| +..++++++.|.+|+   +|
T Consensus        17 ~~~~~~v~Sv~wn~~g~~lasgs~dk-tv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir---~w   92 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNCDGTKLASGSFDK-TVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR---IW   92 (313)
T ss_pred             hhhhhcceEEEEcccCceeeecccCC-ceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEE---EE
Confidence            34889999999999999999998884 8999987654    234578999999999998 467999999999999   99


Q ss_pred             eCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-E
Q psy11524        153 DTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-I  229 (323)
Q Consensus       153 d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i  229 (323)
                      |++ +++...+....+. ..+.|+|+|.++++++.+ .|.+.|.+...+.........+..++|+.++.+++.....| |
T Consensus        93 d~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v  171 (313)
T KOG1407|consen   93 DIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCV  171 (313)
T ss_pred             EeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceE
Confidence            996 6777776655444 458899999999999995 99999998776665555667789999998888777777778 9


Q ss_pred             EEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCe
Q psy11524        230 HIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQ  305 (323)
Q Consensus       230 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~  305 (323)
                      .|.....-+++..  +..|.....++.|+|+|    +++++++.|..+.+|++...    ...-+.-+|..++||.||++
T Consensus       172 ~ILsypsLkpv~s--i~AH~snCicI~f~p~G----ryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~  245 (313)
T KOG1407|consen  172 EILSYPSLKPVQS--IKAHPSNCICIEFDPDG----RYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRM  245 (313)
T ss_pred             EEEeccccccccc--cccCCcceEEEEECCCC----ceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcce
Confidence            9999999999988  79999999999999999    89999999999999999886    33334889999999999999


Q ss_pred             eEeeecCCeEEEEEee
Q psy11524        306 IAGACANGSLLLGTII  321 (323)
Q Consensus       306 l~s~~~dg~i~~~~l~  321 (323)
                      ||+++.|..|-|-++.
T Consensus       246 lASaSEDh~IDIA~ve  261 (313)
T KOG1407|consen  246 LASASEDHFIDIAEVE  261 (313)
T ss_pred             eeccCccceEEeEecc
Confidence            9999999998776553

>KOG0288|consensus

Probab=99.96  E-value=8.2e-28  Score=190.19  Aligned_cols=268  Identities=14%  Similarity=0.187  Sum_probs=213.5

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeeccccccccceeeecC-----------CCCCEEEEEEcCCCCeEEEEeeCCeEE
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLN-----------VSPPVYSAAWSPDSNKVLLTQAKSLVI  106 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~sp~~~~l~~~~~~~~~v  106 (323)
                      ..+..|.+.+..+.|-++..    -+++|..|..+++|..+.           ..++|+++.|.++++++++++.+ +.+
T Consensus       169 ~~ld~h~gev~~v~~l~~sd----tlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d-~~~  243 (459)
T KOG0288|consen  169 FVLDAHEGEVHDVEFLRNSD----TLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASND-KNL  243 (459)
T ss_pred             hhhhccccccceeEEccCcc----hhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCC-Cce
Confidence            45678999999999999873    455665565555555443           35679999999999999988777 599


Q ss_pred             EEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEE
Q psy11524        107 KPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVG  184 (323)
Q Consensus       107 ~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  184 (323)
                      ++|+.+..  ..++.+|.+.|+++.|......+++|+.|.+|+   .||+....+....-....+..|..+  ...+++|
T Consensus       244 r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK---~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~Sg  318 (459)
T KOG0288|consen  244 RLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIK---LWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISG  318 (459)
T ss_pred             eeeeccchhhhhhhcccccceeeehhhccccceeeccccchhh---hhhhhhhheeccccccccccceEec--ceeeeec
Confidence            99998876  778999999999999988777799999999999   9999644333332344556777766  4567777


Q ss_pred             eCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCC--CccceEEEEEccC
Q psy11524        185 SYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLS--HSHEITQLAVNQT  260 (323)
Q Consensus       185 ~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~p~  260 (323)
                      ..| +|++||.++.......+..+.|+++..+++|..|++++.|. +.+.|+++.+....+.-.+  .....+.+.|||+
T Consensus       319 H~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd  398 (459)
T KOG0288|consen  319 HFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD  398 (459)
T ss_pred             ccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence            777 99999988765554444566999999999999999999999 9999999988877632222  2235788999999


Q ss_pred             CCCccceEEEEeCCCCeEEEecccc----cCCCCc--cceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        261 GSLQERHVAFIDKNRDLYLSMWSHS----LDKPDT--GSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       261 g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~--~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      +    .+++.++.+|.+++|++.++    ..+...  ..|++++|+|.|..|++++.++.+.+|.
T Consensus       399 ~----~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  399 G----SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             C----ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            9    89999999999999999876    222222  3699999999999999999999999994

>KOG0647|consensus

Probab=99.96  E-value=5e-27  Score=178.82  Aligned_cols=232  Identities=19%  Similarity=0.264  Sum_probs=185.8

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc----eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK----ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD  155 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~  155 (323)
                      .++.|.+++|||....++++++-++.|++|+....    .+....|.++|.+++|+.||..+++|+.|+.++   +||+.
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k---~wDL~  102 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAK---LWDLA  102 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceE---EEEcc
Confidence            57889999999966666645544479999998763    345677999999999999999999999999999   99998


Q ss_pred             CCeeeEeecCCCceeEEEEecCCC--EEEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEE
Q psy11524        156 GRQLYSSLTHDHPISSLAWAPGGD--MFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHI  231 (323)
Q Consensus       156 ~~~~~~~~~~~~~v~~~~~~p~~~--~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~i  231 (323)
                      ..++..+..|.++|..+.|-+...  .|++|+.| +|+.||.+...........++++++..-.  ..++++..+. |.+
T Consensus       103 S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~--pm~vVata~r~i~v  180 (347)
T KOG0647|consen  103 SGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY--PMAVVATAERHIAV  180 (347)
T ss_pred             CCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC--ceeEEEecCCcEEE
Confidence            889999999999999999988655  79999998 99999998654443344677788776643  3778888888 999


Q ss_pred             EEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc------cCCCCc---------cceeE
Q psy11524        232 FDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS------LDKPDT---------GSVYD  296 (323)
Q Consensus       232 wd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~------~~~~~~---------~~v~~  296 (323)
                      |+++++.......-......+++++..++.    ...++++.+|++.+..+...      .++.|.         -.|++
T Consensus       181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~----~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs  256 (347)
T KOG0647|consen  181 YNLENPPTEFKRIESPLKWQTRCVACFQDK----DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS  256 (347)
T ss_pred             EEcCCCcchhhhhcCcccceeeEEEEEecC----CceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence            999876543321123345678999999988    55599999999998887763      344443         25889


Q ss_pred             EEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        297 LVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       297 ~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      ++|+|.-..|++++.||+..+||-
T Consensus       257 i~FhP~hgtlvTaGsDGtf~FWDk  280 (347)
T KOG0647|consen  257 IAFHPVHGTLVTAGSDGTFSFWDK  280 (347)
T ss_pred             eEeecccceEEEecCCceEEEecc
Confidence            999999999999999999999984

>KOG2096|consensus

Probab=99.96  E-value=2.1e-26  Score=176.85  Aligned_cols=269  Identities=17%  Similarity=0.205  Sum_probs=199.7

Q ss_pred             eeEeecccceeEeeEeccCCcceeeeeeccccccccceeeec----------C---CCCCEEEEEEcCCCCeEEEEeeCC
Q psy11524         37 HLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTL----------N---VSPPVYSAAWSPDSNKVLLTQAKS  103 (323)
Q Consensus        37 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---~~~~v~~~~~sp~~~~l~~~~~~~  103 (323)
                      ...+++|.+.|.++.|+.||+.+++...++    .+++|..-          .   .-+..+.+.|+||-+-+++....+
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr----~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g  154 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDR----SIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG  154 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCc----eEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC
Confidence            457899999999999999997776666654    44443221          1   234678999999999888877666


Q ss_pred             eEEEEeCCCCc-----ee---E-----e-eccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCce
Q psy11524        104 LVIKPLSPNNK-----AT---K-----W-QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPI  169 (323)
Q Consensus       104 ~~v~~~~~~~~-----~~---~-----~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v  169 (323)
                      ..+++|.+.++     ..   .     + ..|...+..+-...++++|++++.|..|.   +|++.++.+..+......-
T Consensus       155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~---lw~lkGq~L~~idtnq~~n  231 (420)
T KOG2096|consen  155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKIC---LWDLKGQLLQSIDTNQSSN  231 (420)
T ss_pred             CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEE---EEecCCceeeeeccccccc
Confidence            68888865432     11   1     1 23556777788888889999999999999   9999999999998888888


Q ss_pred             eEEEEecCCCEEEEEeCC-eEEEEeCC----CC-----eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCC--
Q psy11524        170 SSLAWAPGGDMFAVGSYN-TLRLCDKV----GW-----SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISS--  236 (323)
Q Consensus       170 ~~~~~~p~~~~l~~~~~~-~i~i~d~~----~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~--  236 (323)
                      +..+.||+|+++++++.- .+++|.+-    +.     ....+++|...|..++|+|+.+.+++.+.|| ++|||..-  
T Consensus       232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY  311 (420)
T KOG2096|consen  232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRY  311 (420)
T ss_pred             cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceE
Confidence            889999999999999885 89999842    21     2236788999999999999999999999999 99999642  


Q ss_pred             -----Cceeeeec--CCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----cCCCCccceeEEEEeeCCC
Q psy11524        237 -----SSSSNVTA--PLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----LDKPDTGSVYDLVWSSDAT  304 (323)
Q Consensus       237 -----~~~~~~~~--~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g~  304 (323)
                           .+.+++..  +....+....++++|.|    ..+++.. ...+.++..+.+     ..+.|++.|.+++|+++|+
T Consensus       312 ~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g----~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~  386 (420)
T KOG2096|consen  312 EAGQDPKILKEGSAPLHAAGSEPVRLELSPSG----DSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGK  386 (420)
T ss_pred             ecCCCchHhhcCCcchhhcCCCceEEEeCCCC----cEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCc
Confidence                 12222210  11223334479999998    5555433 234555554443     4556899999999999999


Q ss_pred             eeEeeecCCeEEEE
Q psy11524        305 QIAGACANGSLLLG  318 (323)
Q Consensus       305 ~l~s~~~dg~i~~~  318 (323)
                      ++++++ |..+++.
T Consensus       387 ~~atcG-dr~vrv~  399 (420)
T KOG2096|consen  387 YIATCG-DRYVRVI  399 (420)
T ss_pred             EEeeec-ceeeeee
Confidence            999998 4555554

>KOG1332|consensus

Probab=99.96  E-value=1.4e-27  Score=176.73  Aligned_cols=238  Identities=16%  Similarity=0.237  Sum_probs=193.7

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-----eeEeeccCCCeEEEEECC--CCCEEEEEcCCCceEeeeE
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-----ATKWQAHDGLILKVAWCS--STDLILSGGEDCKYKASFV  151 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~i~v  151 (323)
                      .|.+.|..+...-.|++||+++.| +.|+++.....     +.++.+|.++|..++|..  -|.+||+++.||.|.   |
T Consensus         9 ~H~D~IHda~lDyygkrlATcsSD-~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI---i   84 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLATCSSD-GTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI---I   84 (299)
T ss_pred             hhhhhhhHhhhhhhcceeeeecCC-ccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE---E
Confidence            388888888888899999999988 59999986654     567899999999999976  699999999999999   9


Q ss_pred             EeCCCC---eeeEeecCCCceeEEEEecC--CCEEEEEeCC-eEEEEeCCCC----eeeecCCCCccEEEEEEcCC---C
Q psy11524        152 WDTDGR---QLYSSLTHDHPISSLAWAPG--GDMFAVGSYN-TLRLCDKVGW----SHSLDKPDTGSVYDLVWSND---A  218 (323)
Q Consensus       152 ~d~~~~---~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~~-~i~i~d~~~~----~~~~~~~~~~~v~~~~~~~~---~  218 (323)
                      |.-++.   +......|...|++++|.|.  |-.|++++.| .|.+.+.+..    .......|.-.|++++|.|.   |
T Consensus        85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g  164 (299)
T KOG1332|consen   85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG  164 (299)
T ss_pred             EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence            998643   34455778999999999995  5668888886 9999886633    23356679999999999985   5


Q ss_pred             -----------CEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-
Q psy11524        219 -----------TQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-  285 (323)
Q Consensus       219 -----------~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-  285 (323)
                                 +.|++|+-|+ |+||+..+++-+....+.+|...|+.++|.|.-.-...+|+.++.|+++.+|..... 
T Consensus       165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~  244 (299)
T KOG1332|consen  165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY  244 (299)
T ss_pred             cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence                       5699999999 999999887655444478999999999999975333357788888888888876542 


Q ss_pred             ------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        286 ------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       286 ------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                            +.+.-...++.++||..|+.|+.++.|+.|.+|+-
T Consensus       245 e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  245 EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence                  22222677999999999999999999999999974

>KOG0310|consensus

Probab=99.96  E-value=4.7e-27  Score=189.60  Aligned_cols=229  Identities=16%  Similarity=0.151  Sum_probs=185.3

Q ss_pred             CCCCEEEEEEcCCCCe-EEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC
Q psy11524         80 VSPPVYSAAWSPDSNK-VLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG  156 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~-l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~  156 (323)
                      ..+.|.+++|+|...+ +|++++.  .+.+|+....  ..++......+.++.|..||+++|+|...|.|+   ++|.+.
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~--rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~---vfD~k~   99 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSV--RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVK---VFDMKS   99 (487)
T ss_pred             ccCcceeEecCCCCCCceEEeccc--EEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEE---Eecccc
Confidence            4688999999996554 5555444  5777776554  556778889999999999999999999999999   999653


Q ss_pred             -CeeeEeecCCCceeEEEEecC-CCEEEEEeCC-eEEEEeCCCCeee-ecCCCCccEEEEEEcCC-CCEEEEEecCc-EE
Q psy11524        157 -RQLYSSLTHDHPISSLAWAPG-GDMFAVGSYN-TLRLCDKVGWSHS-LDKPDTGSVYDLVWSND-ATQIAGACANV-IH  230 (323)
Q Consensus       157 -~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~~-~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~-~~~l~~~~~d~-i~  230 (323)
                       ..+..+..|..++..+.|+|+ +..+++|++| .+++||+.+...+ .+.+|++.|++.+|+|. +..+++|+.|| |+
T Consensus       100 r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr  179 (487)
T KOG0310|consen  100 RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR  179 (487)
T ss_pred             HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence             356788899999999999996 4556677777 8999999876544 67889999999999995 55889999999 99


Q ss_pred             EEEcCCC-ceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----cCCCCccceeEEEEeeCCC
Q psy11524        231 IFDISSS-SSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----LDKPDTGSVYDLVWSSDAT  304 (323)
Q Consensus       231 iwd~~~~-~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g~  304 (323)
                      +||.+.. ..+.+   ..|..+|.++.+-|.|    ..|++... ..+++|++..+     ....|...|+|+.+..++.
T Consensus       180 l~DtR~~~~~v~e---lnhg~pVe~vl~lpsg----s~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~  251 (487)
T KOG0310|consen  180 LWDTRSLTSRVVE---LNHGCPVESVLALPSG----SLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDST  251 (487)
T ss_pred             EEEeccCCceeEE---ecCCCceeeEEEcCCC----CEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCc
Confidence            9999987 55555   5799999999999997    55555433 34667776643     2233889999999999999


Q ss_pred             eeEeeecCCeEEEEEee
Q psy11524        305 QIAGACANGSLLLGTII  321 (323)
Q Consensus       305 ~l~s~~~dg~i~~~~l~  321 (323)
                      .|++++-|+.+++|++.
T Consensus       252 rLlS~sLD~~VKVfd~t  268 (487)
T KOG0310|consen  252 RLLSGSLDRHVKVFDTT  268 (487)
T ss_pred             eEeecccccceEEEEcc
Confidence            99999999999999953

>KOG0275|consensus

Probab=99.96  E-value=7.6e-28  Score=185.35  Aligned_cols=267  Identities=16%  Similarity=0.135  Sum_probs=214.2

Q ss_pred             cccceeEeeEeccCCcceeeeeecc---ccc-cccceeeecC---------CCCCEEEEEEcCCCCeEEEEeeCCeEEEE
Q psy11524         42 RYDGTVINYPISPYISVLHSYAASH---SWP-QALSLCRTLN---------VSPPVYSAAWSPDSNKVLLTQAKSLVIKP  108 (323)
Q Consensus        42 ~~~~~v~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~---------~~~~v~~~~~sp~~~~l~~~~~~~~~v~~  108 (323)
                      +.+..+.|..|||||+.+++...+|   .|+ .++++.+.++         +..+|.|++||.|...+|+|+.| |.|++
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD-GkIKv  289 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD-GKIKV  289 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC-CcEEE
Confidence            4567788999999995444433333   354 2333333332         78999999999999999998777 69999


Q ss_pred             eCCCCc--eeEee-ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEE
Q psy11524        109 LSPNNK--ATKWQ-AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVG  184 (323)
Q Consensus       109 ~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  184 (323)
                      |...++  ++.+. +|...|+++.|+.|+..+++++.|.+++   +.-+. ++.+..+.+|...|+...|.+||..++++
T Consensus       290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvR---iHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa  366 (508)
T KOG0275|consen  290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVR---IHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA  366 (508)
T ss_pred             EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEE---EeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence            988766  56665 8999999999999999999999999999   99985 88999999999999999999999999999


Q ss_pred             eCC-eEEEEeCC-CCeeeecCC--CCccEEEEEEcC-CCCEEEEEecCc-EEEEEcCCCceeeeecCCC---CccceEEE
Q psy11524        185 SYN-TLRLCDKV-GWSHSLDKP--DTGSVYDLVWSN-DATQIAGACANV-IHIFDISSSSSSNVTAPLS---HSHEITQL  255 (323)
Q Consensus       185 ~~~-~i~i~d~~-~~~~~~~~~--~~~~v~~~~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~---~~~~v~~~  255 (323)
                      +.| ++++|+.. +.++..++.  ...+|.++-.-| +...++++...+ +++.++. |+.++.  +..   ..+...+.
T Consensus       367 SsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrs--fsSGkREgGdFi~~  443 (508)
T KOG0275|consen  367 SSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRS--FSSGKREGGDFINA  443 (508)
T ss_pred             cCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEee--eccCCccCCceEEE
Confidence            996 99999976 456655544  345688888888 456788888888 9999965 666665  332   34456677


Q ss_pred             EEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        256 AVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       256 ~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      ..+|.|    ..+.....|+..+.+.+..+    +...|...|..++-+|..+.||+-+.||.+++|+
T Consensus       444 ~lSpkG----ewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  444 ILSPKG----EWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EecCCC----cEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            889999    78888888888887777665    5566888999999999999999999999999995

>KOG0277|consensus

Probab=99.95  E-value=9.8e-27  Score=173.22  Aligned_cols=230  Identities=16%  Similarity=0.180  Sum_probs=185.0

Q ss_pred             EEEEEEcC-CCCeEEEEe------eCCeEEEEeCCCC-c-eeEe--eccCCCeEEEEECCC-CCEEEEEcCCCceEeeeE
Q psy11524         84 VYSAAWSP-DSNKVLLTQ------AKSLVIKPLSPNN-K-ATKW--QAHDGLILKVAWCSS-TDLILSGGEDCKYKASFV  151 (323)
Q Consensus        84 v~~~~~sp-~~~~l~~~~------~~~~~v~~~~~~~-~-~~~~--~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~i~v  151 (323)
                      =+++.||| -..+||++.      ..+|.+++.+... + +...  ..-...+..++|++. .+.+++++.||+++   +
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLr---l   87 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLR---L   87 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEE---E
Confidence            35677888 233444432      2347888888752 2 3333  234678899999995 56889999999999   9


Q ss_pred             EeCC--CCeeeEeecCCCceeEEEEec-CCCEEEEEeCC-eEEEEeCC-CCeeeecCCCCccEEEEEEcC-CCCEEEEEe
Q psy11524        152 WDTD--GRQLYSSLTHDHPISSLAWAP-GGDMFAVGSYN-TLRLCDKV-GWSHSLDKPDTGSVYDLVWSN-DATQIAGAC  225 (323)
Q Consensus       152 ~d~~--~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~~-~i~i~d~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~  225 (323)
                      ||+.  .+++..++.|+..|.++.|++ +++.+++++.| +|++|+.. ...+.++.+|...|...+|+| .++.+++++
T Consensus        88 ~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~S  167 (311)
T KOG0277|consen   88 FDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASAS  167 (311)
T ss_pred             eccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEcc
Confidence            9984  678889999999999999999 46667777777 99999965 567888999999999999999 678999999


Q ss_pred             cCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----cCCCCccceeEEEE
Q psy11524        226 ANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----LDKPDTGSVYDLVW  299 (323)
Q Consensus       226 ~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~  299 (323)
                      .|+ +++||++.......  +..|...+.++.|+.-.   ++.++.++.++.++.|+++..     ...+|+-.|..+.|
T Consensus       168 gd~~l~lwdvr~~gk~~~--i~ah~~Eil~cdw~ky~---~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~  242 (311)
T KOG0277|consen  168 GDGTLRLWDVRSPGKFMS--IEAHNSEILCCDWSKYN---HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKF  242 (311)
T ss_pred             CCceEEEEEecCCCceeE--EEeccceeEeecccccC---CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEec
Confidence            999 99999986433333  57788899999999865   388899999999999998875     44568899999999


Q ss_pred             eeCC-CeeEeeecCCeEEEEEee
Q psy11524        300 SSDA-TQIAGACANGSLLLGTII  321 (323)
Q Consensus       300 s~~g-~~l~s~~~dg~i~~~~l~  321 (323)
                      ||.. ..|++++.|-++++|+..
T Consensus       243 Sph~~~lLaSasYDmT~riw~~~  265 (311)
T KOG0277|consen  243 SPHHASLLASASYDMTVRIWDPE  265 (311)
T ss_pred             CcchhhHhhhccccceEEecccc
Confidence            9975 488999999999999975

>KOG0293|consensus

Probab=99.95  E-value=8.6e-27  Score=184.58  Aligned_cols=242  Identities=16%  Similarity=0.153  Sum_probs=194.2

Q ss_pred             eeeeeEeecccceeEeeEeccCCcceeeeeecc---ccc-cccceeeecCC--CCCEEEEEEcCCCCeEEEEeeCCeEEE
Q psy11524         34 VKNHLTIRRYDGTVINYPISPYISVLHSYAASH---SWP-QALSLCRTLNV--SPPVYSAAWSPDSNKVLLTQAKSLVIK  107 (323)
Q Consensus        34 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~~~~~v~  107 (323)
                      ++...++.+|..+|.-+.||||...+..+..+.   .|| .++.+...+++  ...+.+++|.|||..+++|+.+ +.+.
T Consensus       259 ~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d-r~i~  337 (519)
T KOG0293|consen  259 FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD-RTII  337 (519)
T ss_pred             eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC-CcEE
Confidence            556678999999999999999996555444433   366 44555555554  4889999999999999999888 5999


Q ss_pred             EeCCCCc-eeEeecc-CCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEe
Q psy11524        108 PLSPNNK-ATKWQAH-DGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGS  185 (323)
Q Consensus       108 ~~~~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  185 (323)
                      .|++++. ...+++- ...|.+++..+||+++++...|..|+   +++.+.+....+.....+|++++.|.|++++++.-
T Consensus       338 ~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~---l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL  414 (519)
T KOG0293|consen  338 MWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIR---LYNREARVDRGLISEEQPITSFSISKDGKLALVNL  414 (519)
T ss_pred             EecCCcchhhcccccccceeEEEEEcCCCcEEEEEeccccee---eechhhhhhhccccccCceeEEEEcCCCcEEEEEc
Confidence            9999887 4444443 35689999999999999999999999   99997665555555677899999999999988887


Q ss_pred             CC-eEEEEeCCCC-eeeecCCCCcc--EEEEEEcC-CCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEcc
Q psy11524        186 YN-TLRLCDKVGW-SHSLDKPDTGS--VYDLVWSN-DATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQ  259 (323)
Q Consensus       186 ~~-~i~i~d~~~~-~~~~~~~~~~~--v~~~~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p  259 (323)
                      .+ .+++||+... .+....+|...  +..-+|-- +..++++|++|+ |+||+..+|+++.+  +.+|...|++++|+|
T Consensus       415 ~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~--LsGHs~~vNcVswNP  492 (519)
T KOG0293|consen  415 QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAV--LSGHSKTVNCVSWNP  492 (519)
T ss_pred             ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEe--ecCCcceeeEEecCC
Confidence            76 9999999854 34456666543  44445554 557999999999 99999999999999  899999999999999


Q ss_pred             CCCCccceEEEEeCCCCeEEEeccc
Q psy11524        260 TGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       260 ~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      ..+   ..++.++.||++++|....
T Consensus       493 ~~p---~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  493 ADP---EMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             CCH---HHhhccCCCCeEEEecCCc
Confidence            874   7777888888888887653

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=2e-25  Score=192.28  Aligned_cols=216  Identities=16%  Similarity=0.227  Sum_probs=167.5

Q ss_pred             cCCCCCEEEEEEcC-CCCeEEEEeeCCeEEEEeCCCCc---------eeEeeccCCCeEEEEECCCC-CEEEEEcCCCce
Q psy11524         78 LNVSPPVYSAAWSP-DSNKVLLTQAKSLVIKPLSPNNK---------ATKWQAHDGLILKVAWCSST-DLILSGGEDCKY  146 (323)
Q Consensus        78 ~~~~~~v~~~~~sp-~~~~l~~~~~~~~~v~~~~~~~~---------~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i  146 (323)
                      ..|.+.|++++|+| ++++|++++.| +.|++|+....         +..+.+|...|.+++|+|++ ++|++++.|++|
T Consensus        72 ~GH~~~V~~v~fsP~d~~~LaSgS~D-gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV  150 (493)
T PTZ00421         72 LGQEGPIIDVAFNPFDPQKLFTASED-GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV  150 (493)
T ss_pred             eCCCCCEEEEEEcCCCCCEEEEEeCC-CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence            35899999999999 88899988777 69999997532         45678999999999999975 699999999999


Q ss_pred             EeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-eeeecCCCCcc-EEEEEEcCCCCEEE
Q psy11524        147 KASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGS-VYDLVWSNDATQIA  222 (323)
Q Consensus       147 ~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~-v~~~~~~~~~~~l~  222 (323)
                      +   +||++ ++....+..|...|.+++|+|+|.+|++++.| .|++||++.. .+.....|.+. ...+.|.+++..++
T Consensus       151 r---IWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv  227 (493)
T PTZ00421        151 N---VWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII  227 (493)
T ss_pred             E---EEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence            9   99996 66677788899999999999999999999997 9999998854 44556667654 45788999887777


Q ss_pred             EEe----cCc-EEEEEcCCCc-eeeeecCCCCccceEEEEEccCCCCccceEEEEe-CCCCeEEEeccccc----C-CCC
Q psy11524        223 GAC----ANV-IHIFDISSSS-SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFID-KNRDLYLSMWSHSL----D-KPD  290 (323)
Q Consensus       223 ~~~----~d~-i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~-~~~~~~~~~~~~~~----~-~~~  290 (323)
                      +++    .|+ |++||+++.. ++... .......+....|++++    +.+.++. .++.+++|++....    . ..+
T Consensus       228 t~G~s~s~Dr~VklWDlr~~~~p~~~~-~~d~~~~~~~~~~d~d~----~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s  302 (493)
T PTZ00421        228 TLGCSKSQQRQIMLWDTRKMASPYSTV-DLDQSSALFIPFFDEDT----NLLYIGSKGEGNIRCFELMNERLTFCSSYSS  302 (493)
T ss_pred             EEecCCCCCCeEEEEeCCCCCCceeEe-ccCCCCceEEEEEcCCC----CEEEEEEeCCCeEEEEEeeCCceEEEeeccC
Confidence            654    468 9999998754 33331 12233456667889998    6777766 58889999887641    1 112


Q ss_pred             ccceeEEEEeeC
Q psy11524        291 TGSVYDLVWSSD  302 (323)
Q Consensus       291 ~~~v~~~~~s~~  302 (323)
                      ..++.+++|.|.
T Consensus       303 ~~~~~g~~~~pk  314 (493)
T PTZ00421        303 VEPHKGLCMMPK  314 (493)
T ss_pred             CCCCcceEeccc
Confidence            456677888775

>KOG0294|consensus

Probab=99.95  E-value=1.2e-25  Score=172.40  Aligned_cols=229  Identities=15%  Similarity=0.142  Sum_probs=186.0

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCC--EEEEEcCCCceEeeeEEeC
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTD--LILSGGEDCKYKASFVWDT  154 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~i~v~d~  154 (323)
                      .|..++++++.+  +.++|+|+.|+ .|++||+..+  ...+..|.+.|+++.|.++-.  .|++|+.||.|.   +|+.
T Consensus        41 aH~~sitavAVs--~~~~aSGssDe-tI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~---iw~~  114 (362)
T KOG0294|consen   41 AHAGSITALAVS--GPYVASGSSDE-TIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII---IWRV  114 (362)
T ss_pred             ccccceeEEEec--ceeEeccCCCC-cEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE---EEEc
Confidence            489999999995  89999999887 9999999876  667888999999999998754  899999999999   9999


Q ss_pred             C-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCcEEEE
Q psy11524        155 D-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIF  232 (323)
Q Consensus       155 ~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~i~iw  232 (323)
                      . -..+..+.+|.+.|+.++.+|.|++.++.+.| .++.||+-................+.|+|.|.+++.+..++|-+|
T Consensus       115 ~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~  194 (362)
T KOG0294|consen  115 GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIY  194 (362)
T ss_pred             CCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEE
Confidence            5 67888999999999999999999998888887 999999643333222223344555999999999999998889999


Q ss_pred             EcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEE--eeCCCee
Q psy11524        233 DISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVW--SSDATQI  306 (323)
Q Consensus       233 d~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~--s~~g~~l  306 (323)
                      .+.+.+...+   ......+.++.|...     +.+.++..+..+.+|+....    .+..|...|.++.+  .|++.+|
T Consensus       195 q~d~A~v~~~---i~~~~r~l~~~~l~~-----~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~l  266 (362)
T KOG0294|consen  195 QLDNASVFRE---IENPKRILCATFLDG-----SELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYL  266 (362)
T ss_pred             ecccHhHhhh---hhccccceeeeecCC-----ceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEE
Confidence            9888777665   223356777777655     56777777777777776643    55668999999884  4567899


Q ss_pred             EeeecCCeEEEEEee
Q psy11524        307 AGACANGSLLLGTII  321 (323)
Q Consensus       307 ~s~~~dg~i~~~~l~  321 (323)
                      ++++.||.|++|++.
T Consensus       267 vTaSSDG~I~vWd~~  281 (362)
T KOG0294|consen  267 VTASSDGFIKVWDID  281 (362)
T ss_pred             EEeccCceEEEEEcc
Confidence            999999999999974

>KOG0289|consensus

Probab=99.95  E-value=1.1e-25  Score=179.35  Aligned_cols=262  Identities=17%  Similarity=0.226  Sum_probs=207.0

Q ss_pred             eeEeeEeccCCcceeeeeeccccc--------cccceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--
Q psy11524         46 TVINYPISPYISVLHSYAASHSWP--------QALSLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--  114 (323)
Q Consensus        46 ~v~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--  114 (323)
                      .+.++...|..    ....+|.-|        ...+++..++ |...|+.+.|+|+...+++++.+. .|++|.....  
T Consensus       221 gi~ald~~~s~----~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~-~i~vws~~~~s~  295 (506)
T KOG0289|consen  221 GITALDIIPSS----SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADE-IIRVWSVPLSSE  295 (506)
T ss_pred             CeeEEeecCCC----CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcc-eEEeeccccccC
Confidence            45666666653    233344433        2334455554 899999999999999999998885 9999987654  


Q ss_pred             eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeec--CCCceeEEEEecCCCEEEEEeCC-eEE
Q psy11524        115 ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLT--HDHPISSLAWAPGGDMFAVGSYN-TLR  190 (323)
Q Consensus       115 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~--~~~~v~~~~~~p~~~~l~~~~~~-~i~  190 (323)
                      ......|.++|+.+..+|.|.||++++.|+...   ..|++ +..+.....  ..-.+++.+|+|||.+|.+|..| .++
T Consensus       296 ~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~---Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vk  372 (506)
T KOG0289|consen  296 PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWA---FSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVK  372 (506)
T ss_pred             ccccccccccceeeeeccCCcEEEEecCCceEE---EEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEE
Confidence            556678999999999999999999999999999   99986 555544443  23458999999999999999997 999


Q ss_pred             EEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceE
Q psy11524        191 LCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHV  268 (323)
Q Consensus       191 i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l  268 (323)
                      +||+..+ ....+.+|.++|..++|+.+|-||+++++|+ |++||++.-+..+++.+.. ...+.++.|.+.|    .++
T Consensus       373 iwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~-~~~v~s~~fD~SG----t~L  447 (506)
T KOG0289|consen  373 IWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE-KKEVNSLSFDQSG----TYL  447 (506)
T ss_pred             EEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc-cccceeEEEcCCC----CeE
Confidence            9999855 5667888999999999999999999999999 9999999988777753333 3489999999999    788


Q ss_pred             EEEeCCCCeEEEecccc------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        269 AFIDKNRDLYLSMWSHS------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       269 ~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      .++..+-.++++.-...      ....|.+..+.+.|...-+++++++.|..++++.+
T Consensus       448 ~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  448 GIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             EeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            88855544444432111      34456778899999999999999999999998875

>KOG0313|consensus

Probab=99.95  E-value=1.2e-26  Score=181.84  Aligned_cols=232  Identities=18%  Similarity=0.218  Sum_probs=193.1

Q ss_pred             eecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeeccCCCeEEEEECCC---CCEEEEEcCCCceEeeeE
Q psy11524         76 RTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSS---TDLILSGGEDCKYKASFV  151 (323)
Q Consensus        76 ~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~i~v  151 (323)
                      +.+.|.+.|.++...  +++|++|+.+ |.+++|+..++ ...+.+|.++|.+++|.-.   ...+++++.|.+++   +
T Consensus       100 ~~~~hdDWVSsv~~~--~~~IltgsYD-g~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~---L  173 (423)
T KOG0313|consen  100 QCFLHDDWVSSVKGA--SKWILTGSYD-GTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLR---L  173 (423)
T ss_pred             ccccchhhhhhhccc--CceEEEeecC-CeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEE---E
Confidence            345588888888887  7899999887 69999999988 7788999999998888542   34699999999999   8


Q ss_pred             EeCCC-----CeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCC--------------------------Cee
Q psy11524        152 WDTDG-----RQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVG--------------------------WSH  199 (323)
Q Consensus       152 ~d~~~-----~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~--------------------------~~~  199 (323)
                      |..+.     +....-.+|+..|.+++..++|..+++|+.| +|.+|+...                          .++
T Consensus       174 w~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~  253 (423)
T KOG0313|consen  174 WKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL  253 (423)
T ss_pred             EEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence            77641     2223335899999999999999999999998 999999311                          012


Q ss_pred             eecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeE
Q psy11524        200 SLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLY  278 (323)
Q Consensus       200 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~  278 (323)
                      ..+.+|..+|.++.|++ ...+++++.|. |+.||+.++....+   ......+.++..+|..    ..|+.++.+..++
T Consensus       254 vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~---~~~~ksl~~i~~~~~~----~Ll~~gssdr~ir  325 (423)
T KOG0313|consen  254 VTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKST---LTTNKSLNCISYSPLS----KLLASGSSDRHIR  325 (423)
T ss_pred             EEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceee---eecCcceeEeeccccc----ceeeecCCCCcee
Confidence            35678999999999998 55899999999 99999999998887   3455789999999987    7888888888899


Q ss_pred             EEecccc-------cCCCCccceeEEEEeeCCC-eeEeeecCCeEEEEEee
Q psy11524        279 LSMWSHS-------LDKPDTGSVYDLVWSSDAT-QIAGACANGSLLLGTII  321 (323)
Q Consensus       279 ~~~~~~~-------~~~~~~~~v~~~~~s~~g~-~l~s~~~dg~i~~~~l~  321 (323)
                      +|+.+.+       .+.+|...|.++.|+|... .|++++.|+++++||+.
T Consensus       326 l~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR  376 (423)
T KOG0313|consen  326 LWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR  376 (423)
T ss_pred             ecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence            9988775       5567899999999999875 67899999999999974

>KOG0283|consensus

Probab=99.95  E-value=4.4e-26  Score=195.36  Aligned_cols=193  Identities=16%  Similarity=0.297  Sum_probs=159.7

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeeccCCCeEEEEECC-CCCEEEEEcCCCceEeeeEEeCCCC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQAHDGLILKVAWCS-STDLILSGGEDCKYKASFVWDTDGR  157 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~i~v~d~~~~  157 (323)
                      |...|..++||.++ +|++++-|. +|++|+...+ ......|..-|+|++|+| |.+++++|+-||+++   ||++...
T Consensus       368 Ht~DILDlSWSKn~-fLLSSSMDK-TVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvR---iWsI~d~  442 (712)
T KOG0283|consen  368 HTADILDLSWSKNN-FLLSSSMDK-TVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVR---LWSISDK  442 (712)
T ss_pred             cchhheecccccCC-eeEeccccc-cEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceE---EeecCcC
Confidence            88899999999754 777887775 9999999876 455557999999999999 789999999999999   9999888


Q ss_pred             eeeEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCCeeeec----------CCCCccEEEEEEcC-CCCEEEEEe
Q psy11524        158 QLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGWSHSLD----------KPDTGSVYDLVWSN-DATQIAGAC  225 (323)
Q Consensus       158 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~~~~----------~~~~~~v~~~~~~~-~~~~l~~~~  225 (323)
                      .+..+.....-|++++|.|||+..++|+. |.+++|+..+.+....          ..|. .|+.+.|.| +...+++.+
T Consensus       443 ~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTS  521 (712)
T KOG0283|consen  443 KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTS  521 (712)
T ss_pred             eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEec
Confidence            88888877889999999999999999999 5999999886543311          1123 799999998 344688888


Q ss_pred             cCc-EEEEEcCCCceeeeecCCCC--ccceEEEEEccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        226 ANV-IHIFDISSSSSSNVTAPLSH--SHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       226 ~d~-i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      .|. |+|||.++.+++..  +.+.  ...-....|+.||    ..|...+.|..+++|+...
T Consensus       522 nDSrIRI~d~~~~~lv~K--fKG~~n~~SQ~~Asfs~Dg----k~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  522 NDSRIRIYDGRDKDLVHK--FKGFRNTSSQISASFSSDG----KHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             CCCceEEEeccchhhhhh--hcccccCCcceeeeEccCC----CEEEEeecCceEEEEeCCC
Confidence            899 99999988888777  4543  2344567899999    8999999999999999743

>KOG1446|consensus

Probab=99.95  E-value=6.8e-25  Score=168.41  Aligned_cols=273  Identities=15%  Similarity=0.166  Sum_probs=201.6

Q ss_pred             eeeeEeecccceeEeeEeccCCcceeeeeecc---ccc-cccceeeecC-CCCCEEEEEEcCCCCeEEEEee-CCeEEEE
Q psy11524         35 KNHLTIRRYDGTVINYPISPYISVLHSYAASH---SWP-QALSLCRTLN-VSPPVYSAAWSPDSNKVLLTQA-KSLVIKP  108 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~-~~~~v~~  108 (323)
                      +....++...+.|.++.|+++|..+.....+.   .|| ...+..+++. +...+..++|......++.++. .+..|+.
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence            33445556788999999999996554422221   133 2333344443 5678889999877777776654 1237887


Q ss_pred             eCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC
Q psy11524        109 LSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY  186 (323)
Q Consensus       109 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  186 (323)
                      .++...  ++-+.+|...|.+++.+|-+..+++++.|++|+   +||++......+.... .-..++|+|.|-++|++..
T Consensus        85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvr---LWDlR~~~cqg~l~~~-~~pi~AfDp~GLifA~~~~  160 (311)
T KOG1446|consen   85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVR---LWDLRVKKCQGLLNLS-GRPIAAFDPEGLIFALANG  160 (311)
T ss_pred             EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEE---eeEecCCCCceEEecC-CCcceeECCCCcEEEEecC
Confidence            777655  788999999999999999989999999999999   9999844433333222 2234789999999999998


Q ss_pred             C-eEEEEeCCCC---eeee---cCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccc---eEEE
Q psy11524        187 N-TLRLCDKVGW---SHSL---DKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHE---ITQL  255 (323)
Q Consensus       187 ~-~i~i~d~~~~---~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~---v~~~  255 (323)
                      . .|++||++..   +...   ..+.......+.|||||++|+.++..+ +++.|.-+|..+.+  +..+...   -.+.
T Consensus       161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~t--fs~~~~~~~~~~~a  238 (311)
T KOG1446|consen  161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKST--FSGYPNAGNLPLSA  238 (311)
T ss_pred             CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeee--EeeccCCCCcceeE
Confidence            5 9999998742   2222   223466789999999999999999999 99999999998877  3433222   2577


Q ss_pred             EEccCCCCccceEEEEeCCCCeEEEecccc----cCCC-CccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        256 AVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKP-DTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       256 ~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~-~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      .|+|++    +.|..++.+|.+.+|+++.+    ...+ +.+++.++.|+|.-..+++++  ..+.+|-
T Consensus       239 ~ftPds----~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~  301 (311)
T KOG1446|consen  239 TFTPDS----KFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWL  301 (311)
T ss_pred             EECCCC----cEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEe
Confidence            899999    88989999999999999876    2223 578899999999877777664  4566663

>KOG0299|consensus

Probab=99.95  E-value=1.2e-25  Score=180.33  Aligned_cols=263  Identities=17%  Similarity=0.151  Sum_probs=211.5

Q ss_pred             eeEeecccceeEeeEeccCCcceeeeeeccc---cccc-cc----eeee---------------cCCCCCEEEEEEcCCC
Q psy11524         37 HLTIRRYDGTVINYPISPYISVLHSYAASHS---WPQA-LS----LCRT---------------LNVSPPVYSAAWSPDS   93 (323)
Q Consensus        37 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~-~~----~~~~---------------~~~~~~v~~~~~sp~~   93 (323)
                      ...+..|+-++.++.++|+.+...+...++.   |+.. .+    .+..               -.|...+.+++.|+||
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            3567789999999999999876665555442   3211 00    1100               1477889999999999


Q ss_pred             CeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCcee
Q psy11524         94 NKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPIS  170 (323)
Q Consensus        94 ~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~  170 (323)
                      ++||+|+.+. .|.+|+....  +..+.+|.+.|.+++|-.....+++++.|.+++   +|+++ ...+.++.+|...|.
T Consensus       215 kylatgg~d~-~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvk---vw~~~~~s~vetlyGHqd~v~  290 (479)
T KOG0299|consen  215 KYLATGGRDR-HVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVK---VWSIDQLSYVETLYGHQDGVL  290 (479)
T ss_pred             cEEEecCCCc-eEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceE---EEehhHhHHHHHHhCCcccee
Confidence            9999998885 8899998776  677899999999999998888999999999999   99996 566778899999999


Q ss_pred             EEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCC--
Q psy11524        171 SLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPL--  246 (323)
Q Consensus       171 ~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~--  246 (323)
                      ++.-...++.+.+|+.| ++++|++.......+.++.+.+.|++|-.+ ..+++|+.+| |.+|++.+.+++.+.+..  
T Consensus       291 ~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHg  369 (479)
T KOG0299|consen  291 GIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHG  369 (479)
T ss_pred             eechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeecccc
Confidence            99887777777777778 999999977666677888889999999865 4789999999 999999998888764221  


Q ss_pred             --------CCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc--------cCCCCccceeEEEEeeCCCeeEee
Q psy11524        247 --------SHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS--------LDKPDTGSVYDLVWSSDATQIAGA  309 (323)
Q Consensus       247 --------~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~s~~g~~l~s~  309 (323)
                              .++.+|++++..|..    ..+++++.+|.+++|.+..+        ..+. .+-|++++|+++|+.+++|
T Consensus       370 v~~~~~~~~~~~Witsla~i~~s----dL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~-~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  370 VIPELDPVNGNFWITSLAVIPGS----DLLASGSWSGCVRLWKIEDGLRAINLLYSLSL-VGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             ccCCccccccccceeeeEecccC----ceEEecCCCCceEEEEecCCccccceeeeccc-ccEEEEEEEccCCCEEEEe
Confidence                    122378999999988    89999999999999998876        1222 5789999999999965544

>KOG1036|consensus

Probab=99.95  E-value=1.4e-25  Score=171.51  Aligned_cols=233  Identities=15%  Similarity=0.157  Sum_probs=188.6

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCe
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQ  158 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~  158 (323)
                      ....|.++.|+|.++.|++++.| |.+++|+.... ++....|..++.+++|.+ ...+++|+-||.|+   .+|+....
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWD-gslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr---~~Dln~~~   86 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWD-GSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVR---RYDLNTGN   86 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEecc-CcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEE---EEEecCCc
Confidence            46789999999999999998887 69999998776 444557999999999987 56789999999999   99999888


Q ss_pred             eeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCC
Q psy11524        159 LYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISS  236 (323)
Q Consensus       159 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~  236 (323)
                      ...+..|..++.++.+++-...+++|+.| +|++||.+.............|.++..+  |..|++|+.+. +.+||+++
T Consensus        87 ~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn  164 (323)
T KOG1036|consen   87 EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN  164 (323)
T ss_pred             ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence            88899999999999999987889999998 9999999865433333345578888765  66899999999 99999998


Q ss_pred             CceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc--------cCCCCc---------cceeEEEE
Q psy11524        237 SSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS--------LDKPDT---------GSVYDLVW  299 (323)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~--------~~~~~~---------~~v~~~~~  299 (323)
                      .....+.+-......++++++-|++    .-.++.+.+|++.+-.+...        .++.|.         -+|++++|
T Consensus       165 ~~~~~q~reS~lkyqtR~v~~~pn~----eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F  240 (323)
T KOG1036|consen  165 LDEPFQRRESSLKYQTRCVALVPNG----EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF  240 (323)
T ss_pred             ccchhhhccccceeEEEEEEEecCC----CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence            7654432234566789999999977    55666777887765444332        333342         47999999


Q ss_pred             eeCCCeeEeeecCCeEEEEEeecC
Q psy11524        300 SSDATQIAGACANGSLLLGTIIQR  323 (323)
Q Consensus       300 s~~g~~l~s~~~dg~i~~~~l~~~  323 (323)
                      +|-.+.||||+.||.|.+|++..|
T Consensus       241 hp~~~tfaTgGsDG~V~~Wd~~~r  264 (323)
T KOG1036|consen  241 HPIHGTFATGGSDGIVNIWDLFNR  264 (323)
T ss_pred             ccccceEEecCCCceEEEccCcch
Confidence            999999999999999999998765

>KOG0268|consensus

Probab=99.95  E-value=5.5e-27  Score=182.76  Aligned_cols=265  Identities=15%  Similarity=0.154  Sum_probs=202.3

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeeccccccccceee--------ecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEE
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCR--------TLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKP  108 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~  108 (323)
                      ..+.||.+.|.+++=+|...   +.+++|+.|+..++|.        .++ |.+.|..+++..  ..++++++|. +|+.
T Consensus        60 ~~L~gHrdGV~~lakhp~~l---s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDK-tvK~  133 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKL---STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDK-TVKQ  133 (433)
T ss_pred             hhccccccccchhhcCcchh---hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCc-ceee
Confidence            45789999999999999762   4456666666665553        333 899999999987  5677777774 9999


Q ss_pred             eCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCE-EEEEe
Q psy11524        109 LSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDM-FAVGS  185 (323)
Q Consensus       109 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~-l~~~~  185 (323)
                      |..... ..++ .....+..+.-+..+..++|++.+  |.   |||.. ..++..+.-....+.++.|+|.... |+++.
T Consensus       134 wk~~~~p~~ti-lg~s~~~gIdh~~~~~~FaTcGe~--i~---IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~  207 (433)
T KOG0268|consen  134 WKIDGPPLHTI-LGKSVYLGIDHHRKNSVFATCGEQ--ID---IWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA  207 (433)
T ss_pred             eeccCCcceee-eccccccccccccccccccccCce--ee---ecccccCCccceeecCCCceeEEecCCCcchheeeec
Confidence            987776 3333 344556677666667788888764  78   99995 7788888877888999999997554 55555


Q ss_pred             CC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCC-ceeeeecCCCCccceEEEEEccCCC
Q psy11524        186 YN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSS-SSSNVTAPLSHSHEITQLAVNQTGS  262 (323)
Q Consensus       186 ~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~p~g~  262 (323)
                      .| .|.+||++.............-..++|+|.+-.++++++|. ++.||++.- .++..  ..+|...|.++.|||.| 
T Consensus       208 sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v--~~dhvsAV~dVdfsptG-  284 (433)
T KOG0268|consen  208 SDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNV--HKDHVSAVMDVDFSPTG-  284 (433)
T ss_pred             cCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchh--hcccceeEEEeccCCCc-
Confidence            56 99999988542221112344567899999877888899999 999999864 45555  68899999999999999 


Q ss_pred             CccceEEEEeCCCCeEEEecccccC--CCC---ccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        263 LQERHVAFIDKNRDLYLSMWSHSLD--KPD---TGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       263 ~~d~~l~~~~~~~~~~~~~~~~~~~--~~~---~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                         ..+..++.|..++++.+.....  -.|   ...|.++.||.|.+++++|++|+.|++|+-
T Consensus       285 ---~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  285 ---QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             ---chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence               7788888888888887766410  011   367999999999999999999999999973

>KOG2055|consensus

Probab=99.95  E-value=1.4e-25  Score=180.02  Aligned_cols=265  Identities=13%  Similarity=0.151  Sum_probs=200.4

Q ss_pred             ccceeEeeEeccCCcceeeeeeccccccccceeeecC-----------CCCCEEEEEEcCCCC-eEEEEeeCCeEEEEeC
Q psy11524         43 YDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLN-----------VSPPVYSAAWSPDSN-KVLLTQAKSLVIKPLS  110 (323)
Q Consensus        43 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~sp~~~-~l~~~~~~~~~v~~~~  110 (323)
                      ..+.|.++.|+|..    ..+..+..|++.++++.-+           ...+|.+.+|.|+|+ .+++++.. ..++.||
T Consensus       212 s~~~I~sv~FHp~~----plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr-ky~ysyD  286 (514)
T KOG2055|consen  212 SHGGITSVQFHPTA----PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR-KYLYSYD  286 (514)
T ss_pred             CcCCceEEEecCCC----ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccc-eEEEEee
Confidence            36789999999988    5666777777777765432           357899999999999 66665555 5999999


Q ss_pred             CCCc-e---eEeeccC-CCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEe
Q psy11524        111 PNNK-A---TKWQAHD-GLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGS  185 (323)
Q Consensus       111 ~~~~-~---~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  185 (323)
                      +... +   ....++. ..+.....+|++++|+..+..|.|.   +....++++..-....+.|..++|+.|++.|++++
T Consensus       287 le~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~---lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~  363 (514)
T KOG2055|consen  287 LETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIH---LLHAKTKELITSFKIEGVVSDFTFSSDSKELLASG  363 (514)
T ss_pred             ccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEE---eehhhhhhhhheeeeccEEeeEEEecCCcEEEEEc
Confidence            8765 2   2233333 3466778899999999999999999   98886555544444678899999999998877776


Q ss_pred             C-CeEEEEeCCCCeeeecCCCCcc--EEEEEEcCCCCEEEEEecCc-EEEEEcCC------CceeeeecCCCCccceEEE
Q psy11524        186 Y-NTLRLCDKVGWSHSLDKPDTGS--VYDLVWSNDATQIAGACANV-IHIFDISS------SSSSNVTAPLSHSHEITQL  255 (323)
Q Consensus       186 ~-~~i~i~d~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~-i~iwd~~~------~~~~~~~~~~~~~~~v~~~  255 (323)
                      . +.|++||++...........+.  -++++.+++|.|||+|+..| |.|||..+      .+++.+  +......|+++
T Consensus       364 ~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~--~dNLtt~Itsl  441 (514)
T KOG2055|consen  364 GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKT--VDNLTTAITSL  441 (514)
T ss_pred             CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhh--hhhhheeeeee
Confidence            6 6999999986643322223343  46778889999999999999 99999553      345555  56667789999


Q ss_pred             EEccCCCCccceEEEEeCC--CCeEEEecccc-------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        256 AVNQTGSLQERHVAFIDKN--RDLYLSMWSHS-------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       256 ~~~p~g~~~d~~l~~~~~~--~~~~~~~~~~~-------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +|+|++    ..+++++..  ..+++..+...       .....-+.|+|++|||.|.+||.|..+|.+.+|+|-
T Consensus       442 ~Fn~d~----qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  442 QFNHDA----QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeCcch----hhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            999999    788877643  34566665554       111224789999999999999999999999999983

>KOG0647|consensus

Probab=99.95  E-value=5e-25  Score=168.01  Aligned_cols=253  Identities=13%  Similarity=0.160  Sum_probs=195.7

Q ss_pred             cccceeEeeEeccCCcceeeeeeccccccccceeeecC-----------CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeC
Q psy11524         42 RYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLN-----------VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLS  110 (323)
Q Consensus        42 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~  110 (323)
                      ...+.|.+++|||...   .+++.++||.+.++|..-.           |.++|.+++|+.||..+++++.| +.+++||
T Consensus        25 pP~DsIS~l~FSP~~~---~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~D-k~~k~wD  100 (347)
T KOG0647|consen   25 PPEDSISALAFSPQAD---NLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCD-KQAKLWD  100 (347)
T ss_pred             CcccchheeEeccccC---ceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccC-CceEEEE
Confidence            4567899999999432   5667899999999885432           88999999999999999998888 5999999


Q ss_pred             CCCc-eeEeeccCCCeEEEEECCCCC--EEEEEcCCCceEeeeEEeCCC-CeeeEeecCCCceeEEEEecCCCEEEEEeC
Q psy11524        111 PNNK-ATKWQAHDGLILKVAWCSSTD--LILSGGEDCKYKASFVWDTDG-RQLYSSLTHDHPISSLAWAPGGDMFAVGSY  186 (323)
Q Consensus       111 ~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~i~v~d~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  186 (323)
                      +... ...+..|.++|..+.|-+...  .|++|+.|++++   .||.+. .++.++. .+..++++..-  ...++++..
T Consensus       101 L~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlK---fWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata  174 (347)
T KOG0647|consen  101 LASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLK---FWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATA  174 (347)
T ss_pred             ccCCCeeeeeecccceeEEEEecCCCcceeEeccccccee---ecccCCCCeeeeee-ccceeeehhcc--CceeEEEec
Confidence            9876 778889999999999988655  899999999999   999974 4444443 55667666543  345666666


Q ss_pred             C-eEEEEeCCCCeee---ecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCc---------cce
Q psy11524        187 N-TLRLCDKVGWSHS---LDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHS---------HEI  252 (323)
Q Consensus       187 ~-~i~i~d~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~---------~~v  252 (323)
                      + .|.+|++++....   ...+..-.+++++..++....+.|+-.| +.+..+..+.+...+.+..|.         ..|
T Consensus       175 ~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV  254 (347)
T KOG0647|consen  175 ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV  254 (347)
T ss_pred             CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence            6 9999999754322   2233455689999999888889999999 888887776433332233332         468


Q ss_pred             EEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEe
Q psy11524        253 TQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAG  308 (323)
Q Consensus       253 ~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s  308 (323)
                      .+++|+|.-    ++++....||...+|+-...    ..+.|..+|++.+|+.+|.++|-
T Consensus       255 Nsi~FhP~h----gtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaY  310 (347)
T KOG0647|consen  255 NSIAFHPVH----GTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAY  310 (347)
T ss_pred             cceEeeccc----ceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEE
Confidence            899999987    78888888888888887654    34557899999999999998873

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=4.2e-24  Score=185.19  Aligned_cols=216  Identities=13%  Similarity=0.152  Sum_probs=161.2

Q ss_pred             CCCCCEEEEEEcCC-CCeEEEEeeCCeEEEEeCCCCc----------eeEeeccCCCeEEEEECCCCCE-EEEEcCCCce
Q psy11524         79 NVSPPVYSAAWSPD-SNKVLLTQAKSLVIKPLSPNNK----------ATKWQAHDGLILKVAWCSSTDL-ILSGGEDCKY  146 (323)
Q Consensus        79 ~~~~~v~~~~~sp~-~~~l~~~~~~~~~v~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i  146 (323)
                      .|...|.+++|+|+ +.+|++|+.+ +.|++|+....          ...+.+|...|.+++|+|++.. |++++.|++|
T Consensus        72 gH~~~V~~lafsP~~~~lLASgS~D-gtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtI  150 (568)
T PTZ00420         72 GHTSSILDLQFNPCFSEILASGSED-LTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFV  150 (568)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEeCC-CeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeE
Confidence            48999999999997 7888888777 69999997532          2356789999999999998875 5789999999


Q ss_pred             EeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEE-----EEEcCCC
Q psy11524        147 KASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYD-----LVWSNDA  218 (323)
Q Consensus       147 ~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~-----~~~~~~~  218 (323)
                      +   +||++ ++....+. +...|.+++|+|+|.+|++++.| .|++||+++. .+..+.+|.+.+..     ..|++++
T Consensus       151 r---IWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~  226 (568)
T PTZ00420        151 N---IWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDD  226 (568)
T ss_pred             E---EEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCC
Confidence            9   99996 44444554 56789999999999999999886 9999998854 44566678765433     3356888


Q ss_pred             CEEEEEecC----c-EEEEEcCC-CceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCC
Q psy11524        219 TQIAGACAN----V-IHIFDISS-SSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDK  288 (323)
Q Consensus       219 ~~l~~~~~d----~-i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~  288 (323)
                      .+|++++.+    + |+|||+++ ++++....+..+.+.+...-..+++    ..+.++..|+.+++|++...    +..
T Consensus       227 ~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg----~l~lsGkGD~tIr~~e~~~~~~~~l~~  302 (568)
T PTZ00420        227 NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG----LIYLIGKGDGNCRYYQHSLGSIRKVNE  302 (568)
T ss_pred             CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC----CEEEEEECCCeEEEEEccCCcEEeecc
Confidence            899887765    5 99999995 5666653233343444333334445    56777888899999988654    111


Q ss_pred             -CCccceeEEEEeeCC
Q psy11524        289 -PDTGSVYDLVWSSDA  303 (323)
Q Consensus       289 -~~~~~v~~~~~s~~g  303 (323)
                       .+..++.+++|.|..
T Consensus       303 ~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        303 YKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             cccCCCccceEEcccc
Confidence             135778899999974

>KOG0639|consensus

Probab=99.95  E-value=3.3e-26  Score=185.67  Aligned_cols=268  Identities=13%  Similarity=0.102  Sum_probs=213.3

Q ss_pred             ecccceeEeeEeccCCcceeeeeecc--cccccc-------ceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCC
Q psy11524         41 RRYDGTVINYPISPYISVLHSYAASH--SWPQAL-------SLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSP  111 (323)
Q Consensus        41 ~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~  111 (323)
                      -.|-.-|.++.+|...+.+++....+  .||-+.       ..+..+.....|.++.+.|||+.|++|+.- ..+-+||+
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea-stlsiWDL  494 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA-STLSIWDL  494 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc-ceeeeeec
Confidence            35788888999998776665544433  476332       223445578899999999999999999886 59999999


Q ss_pred             CCcee----EeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeC
Q psy11524        112 NNKAT----KWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY  186 (323)
Q Consensus       112 ~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  186 (323)
                      .....    .++...-.+.+++.+||.+...++..||.|.   |||+. ...++.+.+|...+.||.+++||..|.+|+-
T Consensus       495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~---vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGl  571 (705)
T KOG0639|consen  495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIA---VWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGL  571 (705)
T ss_pred             cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEE---EEEcccceeeecccCCCCCceeEEecCCCceeecCCC
Confidence            87622    2333445678899999999999999999999   99996 5667889999999999999999999999999


Q ss_pred             C-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCC--
Q psy11524        187 N-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGS--  262 (323)
Q Consensus       187 ~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~--  262 (323)
                      | +++.||++.............|.++..+|++.+|++|-+++ +.+-.....+...   +.-|...|.++.|.+.|+  
T Consensus       572 DntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyq---lhlheScVLSlKFa~cGkwf  648 (705)
T KOG0639|consen  572 DNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQ---LHLHESCVLSLKFAYCGKWF  648 (705)
T ss_pred             ccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcccee---ecccccEEEEEEecccCcee
Confidence            7 99999998554433334567899999999999999999999 9998865544333   577999999999999995  


Q ss_pred             ---CccceEEEEeCCCCeEEEecccccCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        263 ---LQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       263 ---~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                         +.|+.+-.|..--...++..+.      .+.|.++.+|.|.+++++|+.|....+|.++
T Consensus       649 vStGkDnlLnawrtPyGasiFqskE------~SsVlsCDIS~ddkyIVTGSGdkkATVYeV~  704 (705)
T KOG0639|consen  649 VSTGKDNLLNAWRTPYGASIFQSKE------SSSVLSCDISFDDKYIVTGSGDKKATVYEVI  704 (705)
T ss_pred             eecCchhhhhhccCccccceeeccc------cCcceeeeeccCceEEEecCCCcceEEEEEe
Confidence               4555555555544445555544      7899999999999999999999999999874

>KOG0973|consensus

Probab=99.95  E-value=2.8e-25  Score=195.27  Aligned_cols=229  Identities=14%  Similarity=0.177  Sum_probs=182.1

Q ss_pred             CCCEEEEEEcCCCCeEEEEe--eCCeEEEEeCCCCc--------------eeEeeccCCCeEEEEECCCCCEEEEEcCCC
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQ--AKSLVIKPLSPNNK--------------ATKWQAHDGLILKVAWCSSTDLILSGGEDC  144 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~--~~~~~v~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  144 (323)
                      +..|.++..+|+|..+++|+  .|. .+.+|+...-              +.++..|.+.|.|+.|+|||++||+|++|+
T Consensus        13 ~~~IfSIdv~pdg~~~aTgGq~~d~-~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~   91 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGVKFATGGQVLDG-GIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR   91 (942)
T ss_pred             CeeEEEEEecCCceeEecCCccccc-cceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence            56799999999999999998  564 5558875321              446678999999999999999999999999


Q ss_pred             ceEeeeEEeCCC-------------------CeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-eeeecC
Q psy11524        145 KYKASFVWDTDG-------------------RQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-SHSLDK  203 (323)
Q Consensus       145 ~i~~i~v~d~~~-------------------~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~  203 (323)
                      .|.   ||....                   +.+..+.+|+..|..++|+|++.++++++.| +|.+||.++. .+..+.
T Consensus        92 ~v~---iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~  168 (942)
T KOG0973|consen   92 LVM---IWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR  168 (942)
T ss_pred             eEE---EeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee
Confidence            998   998741                   2456778899999999999999999999997 9999997754 667889


Q ss_pred             CCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCC------CccceEEEEEccCCCCccceEEEEeC-CC
Q psy11524        204 PDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLS------HSHEITQLAVNQTGSLQERHVAFIDK-NR  275 (323)
Q Consensus       204 ~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~p~g~~~d~~l~~~~~-~~  275 (323)
                      +|.+.|-.+.|.|-|+|+++-+.|+ |++|+..+....+.  +.+      .......+.|||||    .+|++.+. ++
T Consensus       169 ~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~--It~pf~~~~~~T~f~RlSWSPDG----~~las~nA~n~  242 (942)
T KOG0973|consen  169 GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKS--ITKPFEESPLTTFFLRLSWSPDG----HHLASPNAVNG  242 (942)
T ss_pred             cccccccceEECCccCeeeeecCCceEEEEEcccceeeEe--eccchhhCCCcceeeecccCCCc----CeecchhhccC
Confidence            9999999999999999999999999 99999777655554  222      23467889999999    56655432 11


Q ss_pred             C---eEE-----EecccccCCCCccceeEEEEeeC-----CC------------eeEeeecCCeEEEEEe
Q psy11524        276 D---LYL-----SMWSHSLDKPDTGSVYDLVWSSD-----AT------------QIAGACANGSLLLGTI  320 (323)
Q Consensus       276 ~---~~~-----~~~~~~~~~~~~~~v~~~~~s~~-----g~------------~l~s~~~dg~i~~~~l  320 (323)
                      .   +.+     |.... .+-+|..++..+.|+|.     .+            .+|+|+.|++|.||..
T Consensus       243 ~~~~~~IieR~tWk~~~-~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T  311 (942)
T KOG0973|consen  243 GKSTIAIIERGTWKVDK-DLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT  311 (942)
T ss_pred             CcceeEEEecCCceeee-eeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence            1   112     33222 45568999999999982     11            6789999999999975

>KOG0641|consensus

Probab=99.94  E-value=5.8e-24  Score=156.22  Aligned_cols=240  Identities=19%  Similarity=0.228  Sum_probs=190.3

Q ss_pred             ceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCC-------------c----eeEeeccCCCeEEEEECCCCC
Q psy11524         73 SLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN-------------K----ATKWQAHDGLILKVAWCSSTD  135 (323)
Q Consensus        73 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~-------------~----~~~~~~~~~~v~~~~~~~~~~  135 (323)
                      .....++....|.+++|+|.|...++|+... .+++.....             .    .+.-+-|.+.|.+.+|+|+|+
T Consensus        24 ~~i~~l~dsqairav~fhp~g~lyavgsnsk-t~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge  102 (350)
T KOG0641|consen   24 EAINILEDSQAIRAVAFHPAGGLYAVGSNSK-TFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE  102 (350)
T ss_pred             EEEEEecchhheeeEEecCCCceEEeccCCc-eEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC
Confidence            3456677888999999999999999887664 666643211             0    112345789999999999999


Q ss_pred             EEEEEcCCCceEeeeEEeCC------CCeeeEeecCCCceeEEEEecC----CCEEEEEeC-C-eEEEEeCC-CCeeeec
Q psy11524        136 LILSGGEDCKYKASFVWDTD------GRQLYSSLTHDHPISSLAWAPG----GDMFAVGSY-N-TLRLCDKV-GWSHSLD  202 (323)
Q Consensus       136 ~l~~~~~d~~i~~i~v~d~~------~~~~~~~~~~~~~v~~~~~~p~----~~~l~~~~~-~-~i~i~d~~-~~~~~~~  202 (323)
                      ++++|+.|++|+   +...+      ...-..+.-|.+.|..++|-.+    |.+|++++. | .|++-|.. ++....+
T Consensus       103 liatgsndk~ik---~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~  179 (350)
T KOG0641|consen  103 LIATGSNDKTIK---VLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL  179 (350)
T ss_pred             eEEecCCCceEE---EEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence            999999999999   77663      1233456778999999999754    667888888 5 88888854 6677888


Q ss_pred             CCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCC-----ccceEEEEEccCCCCccceEEEEeCCCC
Q psy11524        203 KPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSH-----SHEITQLAVNQTGSLQERHVAFIDKNRD  276 (323)
Q Consensus       203 ~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~~p~g~~~d~~l~~~~~~~~  276 (323)
                      .+|.+.|..+ ++-+|-.+++|+.|. |++||++-..++.++--.-|     ...|.+++..|.|    +.++.+..+..
T Consensus       180 sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg----rll~sg~~dss  254 (350)
T KOG0641|consen  180 SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG----RLLASGHADSS  254 (350)
T ss_pred             cCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc----ceeeeccCCCc
Confidence            8999988775 444688999999999 99999998887776311112     2578999999999    88888888888


Q ss_pred             eEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        277 LYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       277 ~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      ..++++..+    .+..|...|.++.|||.-.+|++++.|..|++-+|.
T Consensus       255 c~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  255 CMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             eEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence            888988876    344578999999999999999999999999998874

>KOG0300|consensus

Probab=99.94  E-value=2e-25  Score=171.56  Aligned_cols=268  Identities=13%  Similarity=0.169  Sum_probs=207.8

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeecccccccccee--------eec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEE
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLC--------RTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKP  108 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~  108 (323)
                      ..+.||.+.|+.++......    .+.+++-|.+..+|        ..+ +|.+.|++++|++.+..+++++.|. .-.+
T Consensus       142 re~~GHkDGiW~Vaa~~tqp----i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~-taHI  216 (481)
T KOG0300|consen  142 RELEGHKDGIWHVAADSTQP----ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDE-TAHI  216 (481)
T ss_pred             hhhcccccceeeehhhcCCc----ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCc-chHH
Confidence            45789999999998776542    33344434443333        333 4999999999999999999998874 7777


Q ss_pred             eCC------CC------------------------------------ceeEeeccCCCeEEEEECCCCCEEEEEcCCCce
Q psy11524        109 LSP------NN------------------------------------KATKWQAHDGLILKVAWCSSTDLILSGGEDCKY  146 (323)
Q Consensus       109 ~~~------~~------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  146 (323)
                      |..      ..                                    .+..+++|.+.|.+..|...|+.+++++.|.+.
T Consensus       217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA  296 (481)
T KOG0300|consen  217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA  296 (481)
T ss_pred             HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence            751      00                                    023567899999999999999999999999999


Q ss_pred             EeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCC--CeeeecCCCCccEEEEEEcCCCCEEE
Q psy11524        147 KASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVG--WSHSLDKPDTGSVYDLVWSNDATQIA  222 (323)
Q Consensus       147 ~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~  222 (323)
                      .   +||++ +..+..+.+|+...+.++-+|..+++++.+.| +.++||.+.  ..+..+.+|...|+++.|.-+. .++
T Consensus       297 n---lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vV  372 (481)
T KOG0300|consen  297 N---LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVV  372 (481)
T ss_pred             e---eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-cee
Confidence            9   99996 77888899999999999999999999999998 999999883  3566899999999999999865 588


Q ss_pred             EEecCc-EEEEEcCCCc-eeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc--------cCCCCcc
Q psy11524        223 GACANV-IHIFDISSSS-SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS--------LDKPDTG  292 (323)
Q Consensus       223 ~~~~d~-i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~--------~~~~~~~  292 (323)
                      +|++|. |++||+++.+ ++.+   .....+++.++.+..+    ..|++--.+..++++++...        ..++|..
T Consensus       373 SgSDDrTvKvWdLrNMRsplAT---IRtdS~~NRvavs~g~----~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrR  445 (481)
T KOG0300|consen  373 SGSDDRTVKVWDLRNMRSPLAT---IRTDSPANRVAVSKGH----PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRR  445 (481)
T ss_pred             ecCCCceEEEeeeccccCccee---eecCCccceeEeecCC----ceEEeccCCceEEEEecCCCccccCCcccccccce
Confidence            999999 9999998764 4555   2345677777777655    34444444444555555443        4567888


Q ss_pred             ceeEEEEeeCCC--eeEeeecCCeEEEEEee
Q psy11524        293 SVYDLVWSSDAT--QIAGACANGSLLLGTII  321 (323)
Q Consensus       293 ~v~~~~~s~~g~--~l~s~~~dg~i~~~~l~  321 (323)
                      .|.+++|..+-.  -|++++-|..+.=|++.
T Consensus       446 MV~c~AW~eehp~cnLftcGFDR~v~gW~in  476 (481)
T KOG0300|consen  446 MVTCCAWLEEHPACNLFTCGFDRMVAGWKIN  476 (481)
T ss_pred             eeeeeeccccCcccccccccccceeeeeEec
Confidence            999999987643  58899999999999985

>KOG0301|consensus

Probab=99.94  E-value=8.2e-25  Score=183.69  Aligned_cols=265  Identities=14%  Similarity=0.161  Sum_probs=212.6

Q ss_pred             eeeeEeecccceeEeeEeccCCcceeeeeeccccccccceeee----------c-CCCCCEEE-EEEcC-CCCeEEEEee
Q psy11524         35 KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRT----------L-NVSPPVYS-AAWSP-DSNKVLLTQA  101 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~v~~-~~~sp-~~~~l~~~~~  101 (323)
                      +....+.+|+..|..+.+.+..     ++.+++-|++.++|..          + +|.+-|.+ +++-+ ++-.+++|+.
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~~-----~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~   79 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDGV-----CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGM   79 (745)
T ss_pred             eeEEEeccCccchheeEecCCe-----EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecc
Confidence            4456788999999888877654     5666666666665543          2 25566666 77776 3445777777


Q ss_pred             CCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCC
Q psy11524        102 KSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGD  179 (323)
Q Consensus       102 ~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~  179 (323)
                      | ..+.+|...+.  ...+.+|...|.+++...++. +++||.|.+++   +|... +....+.+|+..|+.++.-|.+ 
T Consensus        80 D-~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~Tak---vW~~~-~l~~~l~gH~asVWAv~~l~e~-  152 (745)
T KOG0301|consen   80 D-TTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAK---VWRIG-ELVYSLQGHTASVWAVASLPEN-  152 (745)
T ss_pred             c-ceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceE---Eecch-hhhcccCCcchheeeeeecCCC-
Confidence            7 58889987765  788999999999999877777 89999999999   99764 4455589999999999999887 


Q ss_pred             EEEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEE
Q psy11524        180 MFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAV  257 (323)
Q Consensus       180 ~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  257 (323)
                      .+++|+.| +|++|.- +..++++.+|.+.|+.+++-+++ .+++++.|| |++|++ +|+.+.+  ..+|..-+.++..
T Consensus       153 ~~vTgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~--~~ghtn~vYsis~  227 (745)
T KOG0301|consen  153 TYVTGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLE--MHGHTNFVYSISM  227 (745)
T ss_pred             cEEeccCcceeeeccC-CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeee--eeccceEEEEEEe
Confidence            78899998 9999997 55677888999999999999876 478999999 999998 7777777  7999999999996


Q ss_pred             ccCCCCccceEEEEeCCCCeEEEecccc--cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        258 NQTGSLQERHVAFIDKNRDLYLSMWSHS--LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       258 ~p~g~~~d~~l~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      .+++    +.|.....|+.+++|+....  ....+...++++.+-++|. +++|++||.|+||...
T Consensus       228 ~~~~----~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  228 ALSD----GLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             cCCC----CeEEEecCCceEEEeecCceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            6665    78888888888888887654  3334466899999988886 7888889999999763

>KOG1036|consensus

Probab=99.94  E-value=1.8e-24  Score=165.49  Aligned_cols=254  Identities=14%  Similarity=0.173  Sum_probs=194.1

Q ss_pred             ccceeEeeEeccCCcceeeeeeccccccccceee--------ecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc
Q psy11524         43 YDGTVINYPISPYISVLHSYAASHSWPQALSLCR--------TLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK  114 (323)
Q Consensus        43 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~  114 (323)
                      .++.|.++.|+|.+    ..+..++||+++++..        .+.|..++.+++|.++ ..+++|+-+ |.|+.+|++..
T Consensus        12 P~d~IS~v~f~~~~----~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~d-g~vr~~Dln~~   85 (323)
T KOG1036|consen   12 PEDGISSVKFSPSS----SDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLD-GQVRRYDLNTG   85 (323)
T ss_pred             ChhceeeEEEcCcC----CcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccC-ceEEEEEecCC
Confidence            36788999999887    4555667998887653        4569999999999984 456777767 69999999887


Q ss_pred             -eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEE
Q psy11524        115 -ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLC  192 (323)
Q Consensus       115 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~  192 (323)
                       ...+..|..+|.++.+++....+++|+.|++|+   +||.+.+...........|.++..+  |+.|++|+.+ .+.+|
T Consensus        86 ~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik---~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iy  160 (323)
T KOG1036|consen   86 NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIK---FWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIY  160 (323)
T ss_pred             cceeeccCCCceEEEEeeccCCeEEEcccCccEE---EEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEE
Confidence             667788999999999999888999999999999   9999865444434445578888775  7788888887 99999


Q ss_pred             eCCCCeeee---cCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCce--eeeecCCCC---------ccceEEEEE
Q psy11524        193 DKVGWSHSL---DKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSS--SNVTAPLSH---------SHEITQLAV  257 (323)
Q Consensus       193 d~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~--~~~~~~~~~---------~~~v~~~~~  257 (323)
                      |++......   ....+-.++++++-|++.-.++++-+| |.+=.++..+.  .+.+.+..|         -.+|++++|
T Consensus       161 DLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F  240 (323)
T KOG1036|consen  161 DLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF  240 (323)
T ss_pred             EcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence            998653332   233456799999999888888899898 65544333311  111112222         248999999


Q ss_pred             ccCCCCccceEEEEeCCCCeEEEecccc--cCCCC--ccceeEEEEeeCCCeeEeeec
Q psy11524        258 NQTGSLQERHVAFIDKNRDLYLSMWSHS--LDKPD--TGSVYDLVWSSDATQIAGACA  311 (323)
Q Consensus       258 ~p~g~~~d~~l~~~~~~~~~~~~~~~~~--~~~~~--~~~v~~~~~s~~g~~l~s~~~  311 (323)
                      +|--    +++++++.||.+.+|+....  +...|  ...|.+++|+.||..||.++.
T Consensus       241 hp~~----~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  241 HPIH----GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             cccc----ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            9987    89999999999999998764  22222  467999999999999998874

>KOG0643|consensus

Probab=99.94  E-value=1.8e-24  Score=162.30  Aligned_cols=223  Identities=13%  Similarity=0.165  Sum_probs=184.8

Q ss_pred             cCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCC-CCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC
Q psy11524         78 LNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSP-NNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD  155 (323)
Q Consensus        78 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~-~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~  155 (323)
                      ..|+.+++.+.++.+|..|++++.|. ...+|-. ++. +.++.+|.+.|+++....+.+++++|+.|.+++   +||+.
T Consensus         7 ~GHERplTqiKyN~eGDLlFscaKD~-~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~k---LWDv~   82 (327)
T KOG0643|consen    7 QGHERPLTQIKYNREGDLLFSCAKDS-TPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAK---LWDVE   82 (327)
T ss_pred             ccCccccceEEecCCCcEEEEecCCC-CceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeE---EEEcC
Confidence            45999999999999999999998885 6777654 333 889999999999999999999999999999999   99996


Q ss_pred             -CCeeeEeecCCCceeEEEEecCCCEEEEEeC---C---eEEEEeCCC-------C-eeeecCCCCccEEEEEEcCCCCE
Q psy11524        156 -GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY---N---TLRLCDKVG-------W-SHSLDKPDTGSVYDLVWSNDATQ  220 (323)
Q Consensus       156 -~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---~---~i~i~d~~~-------~-~~~~~~~~~~~v~~~~~~~~~~~  220 (323)
                       ++++..+. ...+|..+.|+++|++++...+   +   .|.++|++.       + +...+..+.+.++.+.|.|-+++
T Consensus        83 tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~  161 (327)
T KOG0643|consen   83 TGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET  161 (327)
T ss_pred             CCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence             66666665 5778999999999999887765   2   588999862       2 24455557788999999999999


Q ss_pred             EEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCcccee
Q psy11524        221 IAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVY  295 (323)
Q Consensus       221 l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~  295 (323)
                      |++|.++| |.+||+++|+.+... ...|...|+.+.++|+.    .+....+.|....+|++.+.    .+.- ..+|+
T Consensus       162 ii~Ghe~G~is~~da~~g~~~v~s-~~~h~~~Ind~q~s~d~----T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN  235 (327)
T KOG0643|consen  162 IIAGHEDGSISIYDARTGKELVDS-DEEHSSKINDLQFSRDR----TYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVN  235 (327)
T ss_pred             EEEecCCCcEEEEEcccCceeeec-hhhhccccccccccCCc----ceEEecccCccceeeeccceeeEEEeee-ccccc
Confidence            99999999 999999998655431 56788899999999998    77788888888888888775    2222 68999


Q ss_pred             EEEEeeCCCeeEeeec
Q psy11524        296 DLVWSSDATQIAGACA  311 (323)
Q Consensus       296 ~~~~s~~g~~l~s~~~  311 (323)
                      +.+++|...+++.|+.
T Consensus       236 ~aaisP~~d~VilgGG  251 (327)
T KOG0643|consen  236 TAAISPLLDHVILGGG  251 (327)
T ss_pred             ceecccccceEEecCC
Confidence            9999998877775543

>KOG0289|consensus

Probab=99.94  E-value=1.2e-24  Score=173.55  Aligned_cols=229  Identities=15%  Similarity=0.214  Sum_probs=192.7

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CC
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GR  157 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~  157 (323)
                      ...++++...|....+++|+.+. .+.++|....  +..+++|...|..+.++|+...+++++.|..|+   ||... ..
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~-~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~---vws~~~~s  294 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDK-TAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIR---VWSVPLSS  294 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCC-ceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEE---eecccccc
Confidence            35788899998878888888874 5666665544  788999999999999999999999999999999   99984 55


Q ss_pred             eeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-eeeecCC--CCccEEEEEEcCCCCEEEEEecCc-EEEE
Q psy11524        158 QLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-SHSLDKP--DTGSVYDLVWSNDATQIAGACANV-IHIF  232 (323)
Q Consensus       158 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~-i~iw  232 (323)
                      +......|..+|+.+..+|.|.||++++.+ +..+.|++.. .+.....  ..-.+++++|+|||..+.+|..|+ +++|
T Consensus       295 ~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiw  374 (506)
T KOG0289|consen  295 EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIW  374 (506)
T ss_pred             CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEE
Confidence            666678899999999999999999999997 8888888754 3333221  223589999999999999999999 9999


Q ss_pred             EcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCC-CccceeEEEEeeCCCeeE
Q psy11524        233 DISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKP-DTGSVYDLVWSSDATQIA  307 (323)
Q Consensus       233 d~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~-~~~~v~~~~~s~~g~~l~  307 (323)
                      |+.++..+..  +.+|.++|..++|+.+|    .++++...++.+.+|+++..    .... ....+.++.|.+.|.+|+
T Consensus       375 dlks~~~~a~--Fpght~~vk~i~FsENG----Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~  448 (506)
T KOG0289|consen  375 DLKSQTNVAK--FPGHTGPVKAISFSENG----YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLG  448 (506)
T ss_pred             EcCCcccccc--CCCCCCceeEEEeccCc----eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEE
Confidence            9999988877  89999999999999999    89999999999999999875    1222 124699999999999999


Q ss_pred             eeecCCeEEEEE
Q psy11524        308 GACANGSLLLGT  319 (323)
Q Consensus       308 s~~~dg~i~~~~  319 (323)
                      .++.|=.|++++
T Consensus       449 ~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  449 IAGSDLQVYICK  460 (506)
T ss_pred             eecceeEEEEEe
Confidence            998887777765

>KOG0306|consensus

Probab=99.94  E-value=9.6e-25  Score=184.89  Aligned_cols=231  Identities=14%  Similarity=0.109  Sum_probs=196.6

Q ss_pred             eecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEe
Q psy11524         76 RTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWD  153 (323)
Q Consensus        76 ~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d  153 (323)
                      ....|...|.++++|.+...+++++.  +.+++|+....  ++++.  .+.+.+..|-|.++++++|...|.+.   ++|
T Consensus       368 ~~~GHR~dVRsl~vS~d~~~~~Sga~--~SikiWn~~t~kciRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~---vfd  440 (888)
T KOG0306|consen  368 EIGGHRSDVRSLCVSSDSILLASGAG--ESIKIWNRDTLKCIRTIT--CGYILASKFVPGDRYIVLGTKNGELQ---VFD  440 (888)
T ss_pred             eeccchhheeEEEeecCceeeeecCC--CcEEEEEccCcceeEEec--cccEEEEEecCCCceEEEeccCCceE---EEE
Confidence            44569999999999999887776644  47889987754  55554  34888999999999999999999999   999


Q ss_pred             CC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCC---C---Ce---ee----ecCCCCccEEEEEEcCCC
Q psy11524        154 TD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKV---G---WS---HS----LDKPDTGSVYDLVWSNDA  218 (323)
Q Consensus       154 ~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~---~---~~---~~----~~~~~~~~v~~~~~~~~~  218 (323)
                      +. ...+..+..|++.+.+++.+||++.+++|+.| +|++||..   .   ..   +.    ........|.|+.+||||
T Consensus       441 laS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg  520 (888)
T KOG0306|consen  441 LASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG  520 (888)
T ss_pred             eehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC
Confidence            95 66777888999999999999999999999998 99999953   1   11   11    111245679999999999


Q ss_pred             CEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccc
Q psy11524        219 TQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGS  293 (323)
Q Consensus       219 ~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~  293 (323)
                      ++|+++--|. +++|=+.+-+..-.  +.+|.-||.++..+||+    ..+.+++.|..+.+|-+.-+    .+-.|...
T Consensus       521 k~LaVsLLdnTVkVyflDtlKFfls--LYGHkLPV~smDIS~DS----klivTgSADKnVKiWGLdFGDCHKS~fAHdDS  594 (888)
T KOG0306|consen  521 KLLAVSLLDNTVKVYFLDTLKFFLS--LYGHKLPVLSMDISPDS----KLIVTGSADKNVKIWGLDFGDCHKSFFAHDDS  594 (888)
T ss_pred             cEEEEEeccCeEEEEEecceeeeee--ecccccceeEEeccCCc----CeEEeccCCCceEEeccccchhhhhhhcccCc
Confidence            9999999999 99999998887777  79999999999999999    89999999999999988765    34457899


Q ss_pred             eeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        294 VYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       294 v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      |.++.|-|+...+.+++.|+.|+-||
T Consensus       595 vm~V~F~P~~~~FFt~gKD~kvKqWD  620 (888)
T KOG0306|consen  595 VMSVQFLPKTHLFFTCGKDGKVKQWD  620 (888)
T ss_pred             eeEEEEcccceeEEEecCcceEEeec
Confidence            99999999999999999999999995

>KOG0268|consensus

Probab=99.94  E-value=5e-26  Score=177.44  Aligned_cols=229  Identities=15%  Similarity=0.199  Sum_probs=189.9

Q ss_pred             CCCCCEEEEEEcCCC-CeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC
Q psy11524         79 NVSPPVYSAAWSPDS-NKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD  155 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~-~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~  155 (323)
                      .|.+.|.|++=+|.. ..+++|+.| |.|++||+.+.  ...+.+|.+.|..+++..  ..+++++.|.+|+   .|-++
T Consensus        64 gHrdGV~~lakhp~~ls~~aSGs~D-G~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK---~wk~~  137 (433)
T KOG0268|consen   64 GHRDGVSCLAKHPNKLSTVASGSCD-GEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVK---QWKID  137 (433)
T ss_pred             ccccccchhhcCcchhhhhhccccC-ceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCccee---eeecc
Confidence            499999999999987 678887777 79999999876  778999999999999986  6788999999999   99999


Q ss_pred             CCeeeEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCC-CCeeeecCCCCccEEEEEEcCCCC-EEEEEecCc-EEEE
Q psy11524        156 GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKV-GWSHSLDKPDTGSVYDLVWSNDAT-QIAGACANV-IHIF  232 (323)
Q Consensus       156 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~-i~iw  232 (323)
                      +..+.++.+ +..+..+.-+..+..+++++. .|.|||.. ..++..+.-....+.++.|+|... .|+++..|+ |.||
T Consensus       138 ~~p~~tilg-~s~~~gIdh~~~~~~FaTcGe-~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLy  215 (433)
T KOG0268|consen  138 GPPLHTILG-KSVYLGIDHHRKNSVFATCGE-QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLY  215 (433)
T ss_pred             CCcceeeec-cccccccccccccccccccCc-eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEE
Confidence            877777664 445677776666777777654 68999976 556666666677899999999654 566777899 9999


Q ss_pred             EcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----cCCCCccceeEEEEeeCCCeeE
Q psy11524        233 DISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----LDKPDTGSVYDLVWSSDATQIA  307 (323)
Q Consensus       233 d~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g~~l~  307 (323)
                      |++.+.++..+   .....-+.++|+|.+    -.+..++.|-.++.++....     +++.|.+.|.+++|||.|+.++
T Consensus       216 D~R~~~Pl~KV---i~~mRTN~IswnPea----fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv  288 (433)
T KOG0268|consen  216 DLRQASPLKKV---ILTMRTNTICWNPEA----FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV  288 (433)
T ss_pred             ecccCCcccee---eeeccccceecCccc----cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhc
Confidence            99999998873   334566789999976    67778899999998888765     7778899999999999999999


Q ss_pred             eeecCCeEEEEEeec
Q psy11524        308 GACANGSLLLGTIIQ  322 (323)
Q Consensus       308 s~~~dg~i~~~~l~~  322 (323)
                      +|+.|.+|+||...+
T Consensus       289 sgsyDksIRIf~~~~  303 (433)
T KOG0268|consen  289 SGSYDKSIRIFPVNH  303 (433)
T ss_pred             cccccceEEEeecCC
Confidence            999999999998754

>KOG0639|consensus

Probab=99.94  E-value=9.8e-26  Score=182.93  Aligned_cols=238  Identities=14%  Similarity=0.091  Sum_probs=198.6

Q ss_pred             ccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-----eeEe--eccCCCeEEEEECCCCCEEEEEcCC
Q psy11524         71 ALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-----ATKW--QAHDGLILKVAWCSSTDLILSGGED  143 (323)
Q Consensus        71 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-----~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d  143 (323)
                      ..+..+++.|.+-|.++.+|...+++++|+.  |.|++||+.+.     +..+  ......|.++...|||+.|++|+.-
T Consensus       409 harq~~tL~HGEvVcAvtIS~~trhVyTgGk--gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea  486 (705)
T KOG0639|consen  409 HARQINTLAHGEVVCAVTISNPTRHVYTGGK--GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA  486 (705)
T ss_pred             hHHhhhhhccCcEEEEEEecCCcceeEecCC--CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc
Confidence            3455677889999999999999999988753  58999998764     2222  3456789999999999999999999


Q ss_pred             CceEeeeEEeCCC---CeeeEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCC-eeeecCCCCccEEEEEEcCCC
Q psy11524        144 CKYKASFVWDTDG---RQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDA  218 (323)
Q Consensus       144 ~~i~~i~v~d~~~---~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~  218 (323)
                      .++.   |||+..   .....+......+..++.+||.+..+++.. +.|.|||+.++ .+..+.+|.+.+.|+..++||
T Consensus       487 stls---iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dG  563 (705)
T KOG0639|consen  487 STLS---IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDG  563 (705)
T ss_pred             ceee---eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCC
Confidence            9999   999952   222334444456788999999988777666 59999999876 566899999999999999999


Q ss_pred             CEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc---cCCCCccce
Q psy11524        219 TQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---LDKPDTGSV  294 (323)
Q Consensus       219 ~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---~~~~~~~~v  294 (323)
                      ..|-+|+-|+ ++.||++.++.+..   ......|.++..+|.+    ..++++-.++.+.+......   ....|++.|
T Consensus       564 tklWTGGlDntvRcWDlregrqlqq---hdF~SQIfSLg~cP~~----dWlavGMens~vevlh~skp~kyqlhlheScV  636 (705)
T KOG0639|consen  564 TKLWTGGLDNTVRCWDLREGRQLQQ---HDFSSQIFSLGYCPTG----DWLAVGMENSNVEVLHTSKPEKYQLHLHESCV  636 (705)
T ss_pred             ceeecCCCccceeehhhhhhhhhhh---hhhhhhheecccCCCc----cceeeecccCcEEEEecCCccceeecccccEE
Confidence            9999999999 99999999988876   5566789999999998    89999999998888776554   445678999


Q ss_pred             eEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        295 YDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       295 ~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      .++.|++.|+++++.+.|..+..|+.
T Consensus       637 LSlKFa~cGkwfvStGkDnlLnawrt  662 (705)
T KOG0639|consen  637 LSLKFAYCGKWFVSTGKDNLLNAWRT  662 (705)
T ss_pred             EEEEecccCceeeecCchhhhhhccC
Confidence            99999999999999999999998874

>KOG1274|consensus

Probab=99.94  E-value=4.3e-24  Score=184.63  Aligned_cols=233  Identities=18%  Similarity=0.220  Sum_probs=187.9

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc---eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK---ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD  155 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~  155 (323)
                      .|....+.++|.|+|++|++++.+ +.|++|+....   ...+..+...|.+++-  ++.+|++++.+++|.   +|.+.
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsd-g~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~---~y~fp   84 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSD-GDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVL---RYKFP   84 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCC-CceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEE---EeeCC
Confidence            488889999999999999988877 69999976443   3334446677777665  466999999999999   99985


Q ss_pred             -CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCC-CeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEE
Q psy11524        156 -GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHI  231 (323)
Q Consensus       156 -~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~i  231 (323)
                       +..-..+....-++.+++|+.+|+++|.|++| .|++.+... .....+.+|.++|.++.|+|++++||+.+-|| |++
T Consensus        85 s~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~i  164 (933)
T KOG1274|consen   85 SGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQI  164 (933)
T ss_pred             CCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence             44444556677889999999999999999999 999999764 45667889999999999999999999999999 999


Q ss_pred             EEcCCCceeeeecCC------CCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc------cCCCCccceeEEEE
Q psy11524        232 FDISSSSSSNVTAPL------SHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS------LDKPDTGSVYDLVW  299 (323)
Q Consensus       232 wd~~~~~~~~~~~~~------~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~  299 (323)
                      ||+.++....++...      .....+..++|+|+|    +.+++...++.+.+++....      ..+.+...+..++|
T Consensus       165 w~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~----g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~w  240 (933)
T KOG1274|consen  165 WDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG----GTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQW  240 (933)
T ss_pred             EEcccchhhhhcccCCccccccccceeeeeeecCCC----CeEEeeccCCeEEEEccCCceeheeecccccccceEEEEE
Confidence            999998876652111      113456789999998    77777777777777766553      22334555999999


Q ss_pred             eeCCCeeEeeecCCeEEEEEee
Q psy11524        300 SSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       300 s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +|+|+|||+++.||.|.||+..
T Consensus       241 sPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  241 SPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             cCCCcEEeeeccCCcEEEEecc
Confidence            9999999999999999999975

>KOG0650|consensus

Probab=99.94  E-value=3.4e-24  Score=177.32  Aligned_cols=285  Identities=15%  Similarity=0.154  Sum_probs=214.4

Q ss_pred             cccCcchhcceeee--eeEeecccceeEeeEeccCCcceeeeeeccccccccc--------eeeecCCCCCEEEEEEcCC
Q psy11524         23 ELLSYPEVLRFVKN--HLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALS--------LCRTLNVSPPVYSAAWSPD   92 (323)
Q Consensus        23 ~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~v~~~~~sp~   92 (323)
                      --+|.+...+-+..  ...++||.+.|.++...|.|    .++++|+-|++.+        ++++....+.|.|++|+|.
T Consensus       377 PkLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G----~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~  452 (733)
T KOG0650|consen  377 PKLPSPKDLRPFPTRCALVYRGHTGLVRSISVDPSG----EWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPL  452 (733)
T ss_pred             ccCCChhhcCCCcceeeeeEeccCCeEEEEEecCCc----ceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCC
Confidence            33445555555433  35689999999999999999    5666666555544        4455567899999999997


Q ss_pred             CCe--EEEEeeCCeEEEEeC---------------------------------CCC------ceeEeeccCCCeEEEEEC
Q psy11524         93 SNK--VLLTQAKSLVIKPLS---------------------------------PNN------KATKWQAHDGLILKVAWC  131 (323)
Q Consensus        93 ~~~--l~~~~~~~~~v~~~~---------------------------------~~~------~~~~~~~~~~~v~~~~~~  131 (323)
                      +..  ||++...  .+.+.+                                 ...      .+.....|...|..+.|+
T Consensus       453 ~~~~vLAvA~~~--~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWH  530 (733)
T KOG0650|consen  453 SDLCVLAVAVGE--CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWH  530 (733)
T ss_pred             CCceeEEEEecC--ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeee
Confidence            763  4433222  222222                                 110      023344578899999999


Q ss_pred             CCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCC-eeeecCCCCccE
Q psy11524        132 SSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGW-SHSLDKPDTGSV  209 (323)
Q Consensus       132 ~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~-~~~~~~~~~~~v  209 (323)
                      ..|.+|++...++.-+.|.|.++. ......+....+.+..+.|+|...+|++++...|++||+..+ .+..+......|
T Consensus       531 rkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwi  610 (733)
T KOG0650|consen  531 RKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWI  610 (733)
T ss_pred             cCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeee
Confidence            999999999887665666699995 334455656678899999999999999999999999998754 344555567789


Q ss_pred             EEEEEcCCCCEEEEEecCc-EEEEEcCCC-ceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc--
Q psy11524        210 YDLVWSNDATQIAGACANV-IHIFDISSS-SSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS--  285 (323)
Q Consensus       210 ~~~~~~~~~~~l~~~~~d~-i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~--  285 (323)
                      ..++.+|.|.-|+.++.|+ +..||+.-. ++.++  +..|...+++++|++.-    ..+++++.++.+.++.-..-  
T Consensus       611 S~msihp~GDnli~gs~d~k~~WfDldlsskPyk~--lr~H~~avr~Va~H~ry----PLfas~sdDgtv~Vfhg~VY~D  684 (733)
T KOG0650|consen  611 SSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKT--LRLHEKAVRSVAFHKRY----PLFASGSDDGTVIVFHGMVYND  684 (733)
T ss_pred             eeeeecCCCCeEEEecCCCeeEEEEcccCcchhHH--hhhhhhhhhhhhhcccc----ceeeeecCCCcEEEEeeeeehh
Confidence            9999999999999999999 999998754 56666  67899999999999987    67888888888776543211  


Q ss_pred             -----------cCCCCcc----ceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        286 -----------LDKPDTG----SVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       286 -----------~~~~~~~----~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                                 ..++|..    .|....|+|...+|++++.||+|++|.
T Consensus       685 l~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  685 LLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             hhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence                       4455654    489999999999999999999999983

>KOG0288|consensus

Probab=99.94  E-value=8.3e-26  Score=178.90  Aligned_cols=227  Identities=15%  Similarity=0.207  Sum_probs=185.1

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc----eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK----ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD  155 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~  155 (323)
                      |.+.+..+.|-++...|++++.+. .|++|+....    ..++.+..++|+++.|.++++++++++.|+.++   +|+++
T Consensus       174 h~gev~~v~~l~~sdtlatgg~Dr-~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r---~Wnvd  249 (459)
T KOG0288|consen  174 HEGEVHDVEFLRNSDTLATGGSDR-IIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR---LWNVD  249 (459)
T ss_pred             cccccceeEEccCcchhhhcchhh-hhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCcee---eeecc
Confidence            899999999999989999999886 9999997654    456777888999999999999999999999999   99996


Q ss_pred             -CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEE
Q psy11524        156 -GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHI  231 (323)
Q Consensus       156 -~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~i  231 (323)
                       .+...++.+|...|+++.|......+++|+.| +|++||+... +..... ....+..++.+  ...+++|..|+ |++
T Consensus       250 ~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRf  326 (459)
T KOG0288|consen  250 SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRF  326 (459)
T ss_pred             chhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEE
Confidence             67788999999999999998766668888888 9999998754 333332 34456666666  44688888999 999


Q ss_pred             EEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc---------cCCCCccceeEEEEeeC
Q psy11524        232 FDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---------LDKPDTGSVYDLVWSSD  302 (323)
Q Consensus       232 wd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~v~~~~~s~~  302 (323)
                      ||.++..+...   .+..+.|+++..++++    ..|.....+..+.+.++.+.         -++. ....+.+.|||+
T Consensus       327 wD~Rs~~~~~s---v~~gg~vtSl~ls~~g----~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~-asDwtrvvfSpd  398 (459)
T KOG0288|consen  327 WDIRSADKTRS---VPLGGRVTSLDLSMDG----LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC-ASDWTRVVFSPD  398 (459)
T ss_pred             EeccCCceeeE---eecCcceeeEeeccCC----eEEeeecCCCceeeeecccccEEEEeecccccc-ccccceeEECCC
Confidence            99999998887   3344599999999998    55555566666666655543         1111 345899999999


Q ss_pred             CCeeEeeecCCeEEEEEee
Q psy11524        303 ATQIAGACANGSLLLGTII  321 (323)
Q Consensus       303 g~~l~s~~~dg~i~~~~l~  321 (323)
                      +.|+++|+.||.|+||++.
T Consensus       399 ~~YvaAGS~dgsv~iW~v~  417 (459)
T KOG0288|consen  399 GSYVAAGSADGSVYIWSVF  417 (459)
T ss_pred             CceeeeccCCCcEEEEEcc
Confidence            9999999999999999974

>KOG0305|consensus

Probab=99.93  E-value=4.3e-24  Score=178.35  Aligned_cols=230  Identities=19%  Similarity=0.257  Sum_probs=188.3

Q ss_pred             ccceeEeeEeccCCcceeeeeecc---cccc-ccceeeec-C-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--
Q psy11524         43 YDGTVINYPISPYISVLHSYAASH---SWPQ-ALSLCRTL-N-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--  114 (323)
Q Consensus        43 ~~~~v~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~-~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--  114 (323)
                      +.+.|+++.++++|..|+.....|   .||. +.+..+.+ . |...|.+++|+  +..+.+|+.+ +.|..+|....  
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~-~~I~~~dvR~~~~  292 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRD-GKILNHDVRISQH  292 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCC-CcEEEEEEecchh
Confidence            378999999999997777666665   4762 22333333 3 79999999998  4455555444 68888887655  


Q ss_pred             -eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC-CCCeeeEeecCCCceeEEEEec-CCCEEEEEeC--C-e
Q psy11524        115 -ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT-DGRQLYSSLTHDHPISSLAWAP-GGDMFAVGSY--N-T  188 (323)
Q Consensus       115 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~-~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~--~-~  188 (323)
                       ...+.+|...|..+.|++|+.++|+|+.|+.+.   |||. ...+...+..|.+.|..++|+| ...+||+|+.  | .
T Consensus       293 ~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~---Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~  369 (484)
T KOG0305|consen  293 VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVF---IWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC  369 (484)
T ss_pred             hhhhhhcccceeeeeEECCCCCeeccCCCccceE---eccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE
Confidence             334788999999999999999999999999999   9999 4778889999999999999999 6778898876  6 9


Q ss_pred             EEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEec--Cc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCcc
Q psy11524        189 LRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACA--NV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQE  265 (323)
Q Consensus       189 i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d  265 (323)
                      |++||..+............|.++.|++..+-|+++..  ++ |.||+..+.+.+..  +.+|...|..++++|||    
T Consensus       370 i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~--l~gH~~RVl~la~SPdg----  443 (484)
T KOG0305|consen  370 IKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAE--LLGHTSRVLYLALSPDG----  443 (484)
T ss_pred             EEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeee--ecCCcceeEEEEECCCC----
Confidence            99999875544433346678999999998877776543  45 99999999888888  89999999999999999    


Q ss_pred             ceEEEEeCCCCeEEEeccc
Q psy11524        266 RHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       266 ~~l~~~~~~~~~~~~~~~~  284 (323)
                      ..|+++..|.++.+|++-.
T Consensus       444 ~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  444 ETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             CEEEEecccCcEEeccccC
Confidence            8999999999999998865

>KOG0640|consensus

Probab=99.93  E-value=3.9e-25  Score=169.40  Aligned_cols=200  Identities=21%  Similarity=0.319  Sum_probs=163.8

Q ss_pred             cCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCC--------------------ceeEeeccCCCeEEEEECCCCCEE
Q psy11524         78 LNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN--------------------KATKWQAHDGLILKVAWCSSTDLI  137 (323)
Q Consensus        78 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~--------------------~~~~~~~~~~~v~~~~~~~~~~~l  137 (323)
                      -.|..++.+.+|+|||.++|+|+.| ..|++.|.+.                    .++++..|...|+++.|+|....|
T Consensus       109 t~HK~~cR~aafs~DG~lvATGsaD-~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL  187 (430)
T KOG0640|consen  109 TSHKSPCRAAAFSPDGSLVATGSAD-ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL  187 (430)
T ss_pred             eecccceeeeeeCCCCcEEEccCCc-ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence            3599999999999999999999888 4999998651                    055777899999999999999999


Q ss_pred             EEEcCCCceEeeeEEeCCC---CeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCe-ee---ecCCCCccE
Q psy11524        138 LSGGEDCKYKASFVWDTDG---RQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWS-HS---LDKPDTGSV  209 (323)
Q Consensus       138 ~~~~~d~~i~~i~v~d~~~---~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~-~~---~~~~~~~~v  209 (323)
                      ++++.|++|+   ++|...   +...+......+|.++.|+|.|.++++|.+. .+++||+.+.. ..   ....|.+.|
T Consensus       188 iS~srD~tvK---lFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai  264 (430)
T KOG0640|consen  188 ISGSRDNTVK---LFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI  264 (430)
T ss_pred             EeccCCCeEE---EEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence            9999999999   999952   2223334456789999999999999999995 99999998642 22   234588899


Q ss_pred             EEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc
Q psy11524        210 YDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS  285 (323)
Q Consensus       210 ~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~  285 (323)
                      +++.+++.|++.++++.|| |+|||--+++++.++.-......|.+..|..++    ++|.....|..+++|.+.++
T Consensus       265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~----kyiLsSG~DS~vkLWEi~t~  337 (430)
T KOG0640|consen  265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNG----KYILSSGKDSTVKLWEISTG  337 (430)
T ss_pred             eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCC----eEEeecCCcceeeeeeecCC
Confidence            9999999999999999999 999998899998874222234589999999999    66666667777777776654

>KOG2445|consensus

Probab=99.93  E-value=3.1e-23  Score=158.68  Aligned_cols=236  Identities=15%  Similarity=0.297  Sum_probs=183.6

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc------eeEeeccCCCeEEEEECCC--CCEEEEEcCCCceEeeeE
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK------ATKWQAHDGLILKVAWCSS--TDLILSGGEDCKYKASFV  151 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~------~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~i~v  151 (323)
                      |.+-|+++.|.+.|+++|+|+.|. .+++||....      ...+..|.+.|..+.|.+-  |+.+|+++.|+++.   |
T Consensus        12 h~DlihdVs~D~~GRRmAtCSsDq-~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~---i   87 (361)
T KOG2445|consen   12 HKDLIHDVSFDFYGRRMATCSSDQ-TVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS---I   87 (361)
T ss_pred             CcceeeeeeecccCceeeeccCCC-cEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee---e
Confidence            788899999999999999998885 9999995433      4467899999999999763  89999999999999   9


Q ss_pred             EeCC-------C---CeeeEeecCCCceeEEEEecC--CCEEEEEeCC-eEEEEeCCC------Ceee-e-------cCC
Q psy11524        152 WDTD-------G---RQLYSSLTHDHPISSLAWAPG--GDMFAVGSYN-TLRLCDKVG------WSHS-L-------DKP  204 (323)
Q Consensus       152 ~d~~-------~---~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~~-~i~i~d~~~------~~~~-~-------~~~  204 (323)
                      |.-.       +   ..+.++......|+++.|.|.  |-.+|+++.| .++||+.-.      ..++ .       ...
T Consensus        88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~  167 (361)
T KOG2445|consen   88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK  167 (361)
T ss_pred             eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence            9851       1   123455667788999999994  7778888886 999998532      1111 1       112


Q ss_pred             CCccEEEEEEcC---CCCEEEEEecC-----c-EEEEEcCCC--ceeeeecCCCCccceEEEEEccCCCCccceEEEEeC
Q psy11524        205 DTGSVYDLVWSN---DATQIAGACAN-----V-IHIFDISSS--SSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDK  273 (323)
Q Consensus       205 ~~~~v~~~~~~~---~~~~l~~~~~d-----~-i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~  273 (323)
                      +..+..|+.|+|   ...+|+.|+.+     + ++||....+  +....-.+.+|..+|++++|.|+-...-..|++...
T Consensus       168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k  247 (361)
T KOG2445|consen  168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK  247 (361)
T ss_pred             ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence            456788999998   35689999887     3 777765432  333322367899999999999986433457888888


Q ss_pred             CCCeEEEecccc------------------------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        274 NRDLYLSMWSHS------------------------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       274 ~~~~~~~~~~~~------------------------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      +| ++||++...                        .+..|.+.|+.+.|+-.|..|++.++||.|++|+-
T Consensus       248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence            88 889888731                        35568899999999999999999999999999973

>KOG0269|consensus

Probab=99.93  E-value=4.9e-25  Score=187.17  Aligned_cols=230  Identities=19%  Similarity=0.256  Sum_probs=183.5

Q ss_pred             CCCEEEEEEcC-CCCeEEEEeeCCeEEEEeCCCCc-----eeEeeccCCCeEEEEECCC-CCEEEEEcCCCceEeeeEEe
Q psy11524         81 SPPVYSAAWSP-DSNKVLLTQAKSLVIKPLSPNNK-----ATKWQAHDGLILKVAWCSS-TDLILSGGEDCKYKASFVWD  153 (323)
Q Consensus        81 ~~~v~~~~~sp-~~~~l~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~i~v~d  153 (323)
                      ...+..+.|+. +.++||+++.. |.|.+||++..     +..+..|...+.++.|++. ..+|++|+.||.|+   +||
T Consensus        87 ~~S~~DVkW~~~~~NlIAT~s~n-G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK---~~D  162 (839)
T KOG0269|consen   87 FYSAADVKWGQLYSNLIATCSTN-GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVK---CWD  162 (839)
T ss_pred             eeehhhcccccchhhhheeecCC-CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEE---EEe
Confidence            34566788875 45667776555 79999999872     4567899999999999984 57899999999999   999


Q ss_pred             CC-CCeeeEeecCCCceeEEEEec-CCCEEEEEeC-CeEEEEeCCCC--eeeecCCCCccEEEEEEcCCCCEEEEEecCc
Q psy11524        154 TD-GRQLYSSLTHDHPISSLAWAP-GGDMFAVGSY-NTLRLCDKVGW--SHSLDKPDTGSVYDLVWSNDATQIAGACANV  228 (323)
Q Consensus       154 ~~-~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~-~~i~i~d~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  228 (323)
                      ++ .+...++.+....|..+.|+| .+.+|+++.+ |.+.+||++..  ....+..|.++|.++.|+|++.+||+|+.|+
T Consensus       163 lR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK  242 (839)
T KOG0269|consen  163 LRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDK  242 (839)
T ss_pred             eecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCc
Confidence            96 555666777788899999999 5778999988 59999999854  4557778999999999999999999999999


Q ss_pred             -EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEe--CCCCeEEEecccc-----cCCCCccceeEEEEe
Q psy11524        229 -IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFID--KNRDLYLSMWSHS-----LDKPDTGSVYDLVWS  300 (323)
Q Consensus       229 -i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~--~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s  300 (323)
                       |+|||+.+.+..... ......++.+++|-|...   ..|++..  .+..+.+|++...     ++..|...++.++|.
T Consensus       243 ~vkiWd~t~~~~~~~~-tInTiapv~rVkWRP~~~---~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~  318 (839)
T KOG0269|consen  243 MVKIWDMTDSRAKPKH-TINTIAPVGRVKWRPARS---YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD  318 (839)
T ss_pred             cEEEEeccCCCcccee-EEeecceeeeeeeccCcc---chhhhhhccccceEEEEeeccccccceeeeccCccccceecc
Confidence             999999876544332 134557999999999874   5666654  3556888988776     555678999999997


Q ss_pred             e-CCCeeEeeecCCeEEEE
Q psy11524        301 S-DATQIAGACANGSLLLG  318 (323)
Q Consensus       301 ~-~g~~l~s~~~dg~i~~~  318 (323)
                      . |...|.+++.||++...
T Consensus       319 ~~d~~~l~s~sKD~tv~qh  337 (839)
T KOG0269|consen  319 SGDRINLWSCSKDGTVLQH  337 (839)
T ss_pred             CCCceeeEeecCccHHHHh
Confidence            6 33477799999987643

>KOG1063|consensus

Probab=99.93  E-value=1.1e-23  Score=177.00  Aligned_cols=274  Identities=20%  Similarity=0.242  Sum_probs=207.6

Q ss_pred             EeecccceeEeeEeccCCcceeeeeeccc---cc--cccceeee------cC-CCCCEEEEEEcCCCCeEEEEeeCCeEE
Q psy11524         39 TIRRYDGTVINYPISPYISVLHSYAASHS---WP--QALSLCRT------LN-VSPPVYSAAWSPDSNKVLLTQAKSLVI  106 (323)
Q Consensus        39 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~------~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v  106 (323)
                      .+.||++-|+++.++|++..+.+..++.+   |.  ....+|..      +. ........-|+|++..+++-+ ..|..
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g-~~Gg~  340 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHG-RTGGF  340 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEec-ccCcE
Confidence            35699999999999999955544444332   32  22223221      11 245689999999998887554 44789


Q ss_pred             EEeCCCCc-----eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCC-----eeeEeecCCCceeEEEEec
Q psy11524        107 KPLSPNNK-----ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGR-----QLYSSLTHDHPISSLAWAP  176 (323)
Q Consensus       107 ~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~-----~~~~~~~~~~~v~~~~~~p  176 (323)
                      ++|....+     .....+|.+.|.+++|+|.|++|++.+.|-+-+   ++-.-++     ++..-+-|...++|++|-+
T Consensus       341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTR---lFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn  417 (764)
T KOG1063|consen  341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTR---LFARWGRQQEWHEIARPQIHGYDLTCLSFVN  417 (764)
T ss_pred             EEEeccCccceeeccccccccccceeeeecCCCCEEEEecccccee---eecccccccceeeecccccccccceeeehcc
Confidence            99984433     334578999999999999999999999999999   7765322     2222245777899999987


Q ss_pred             CCCEEEEEeCC-eEEEEeCCCC-----------e------------e---------------------------------
Q psy11524        177 GGDMFAVGSYN-TLRLCDKVGW-----------S------------H---------------------------------  199 (323)
Q Consensus       177 ~~~~l~~~~~~-~i~i~d~~~~-----------~------------~---------------------------------  199 (323)
                      ....|++|.+. -+|+|+....           +            +                                 
T Consensus       418 ~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p  497 (764)
T KOG1063|consen  418 EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP  497 (764)
T ss_pred             CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCc
Confidence            55567777664 7788764110           0            0                                 


Q ss_pred             ---------------------eecCCCCccEEEEEEcCCCCEEEEEecC-----c-EEEEEcCCCceeeeecCCCCccce
Q psy11524        200 ---------------------SLDKPDTGSVYDLVWSNDATQIAGACAN-----V-IHIFDISSSSSSNVTAPLSHSHEI  252 (323)
Q Consensus       200 ---------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~-i~iwd~~~~~~~~~~~~~~~~~~v  252 (323)
                                           ..+.+|...|++++.+|+|+++|+++..     . |++|+..+......  +.+|.-.|
T Consensus       498 ~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~--L~~HsLTV  575 (764)
T KOG1063|consen  498 CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQE--LEGHSLTV  575 (764)
T ss_pred             hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhe--ecccceEE
Confidence                                 2345788899999999999999998753     3 99999998888877  79999999


Q ss_pred             EEEEEccCCCCccceEEEEeCCCCeEEEecccc--------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        253 TQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS--------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       253 ~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      +.++|||||    .+|...+.|....+|.....        ..+.|..-|++.+|+|++.+++|++.|.+|++|.+.+
T Consensus       576 T~l~FSpdg----~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~  649 (764)
T KOG1063|consen  576 TRLAFSPDG----RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD  649 (764)
T ss_pred             EEEEECCCC----cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence            999999999    78888888888888877553        3566889999999999999999999999999998754

>KOG0308|consensus

Probab=99.93  E-value=6.6e-25  Score=183.04  Aligned_cols=227  Identities=16%  Similarity=0.246  Sum_probs=190.5

Q ss_pred             EEEEc-CCCCeEEEEeeCCeEEEEeCCCCc--------eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-
Q psy11524         86 SAAWS-PDSNKVLLTQAKSLVIKPLSPNNK--------ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-  155 (323)
Q Consensus        86 ~~~~s-p~~~~l~~~~~~~~~v~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-  155 (323)
                      .+..+ |.+++|++||.| |.|+.|+....        ...++.|...|..+....+++.|++++.|.+|+   +|+.. 
T Consensus        29 ~Lq~da~~~ryLfTgGRD-g~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK---~W~~~~  104 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRD-GIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK---VWNAHK  104 (735)
T ss_pred             hccccCCCCceEEecCCC-ceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE---Eeeccc
Confidence            34444 456679988877 69999986542        456788999999999999999999999999999   99984 


Q ss_pred             C--CeeeEeecCCCceeEEEE-ecCCCEEEEEeCC-eEEEEeCCCCee-----------e-ecCCCCccEEEEEEcCCCC
Q psy11524        156 G--RQLYSSLTHDHPISSLAW-APGGDMFAVGSYN-TLRLCDKVGWSH-----------S-LDKPDTGSVYDLVWSNDAT  219 (323)
Q Consensus       156 ~--~~~~~~~~~~~~v~~~~~-~p~~~~l~~~~~~-~i~i~d~~~~~~-----------~-~~~~~~~~v~~~~~~~~~~  219 (323)
                      .  -+...+..|...|.++++ .++...+|+|+-| .|.+||+.....           . ...++..+|++++.++.|.
T Consensus       105 ~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t  184 (735)
T KOG0308|consen  105 DNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT  184 (735)
T ss_pred             CcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce
Confidence            2  567788899999999999 7788889999988 999999874311           1 1226778899999999999


Q ss_pred             EEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccce
Q psy11524        220 QIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSV  294 (323)
Q Consensus       220 ~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v  294 (323)
                      .+++|+..+ |++||.++++.+..  +.+|...|+.+..++||    ..+...+.|+.+++|++...    ++..|...|
T Consensus       185 ~ivsGgtek~lr~wDprt~~kimk--LrGHTdNVr~ll~~dDG----t~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~V  258 (735)
T KOG0308|consen  185 IIVSGGTEKDLRLWDPRTCKKIMK--LRGHTDNVRVLLVNDDG----TRLLSASSDGTIRLWDLGQQRCLATYIVHKEGV  258 (735)
T ss_pred             EEEecCcccceEEeccccccceee--eeccccceEEEEEcCCC----CeEeecCCCceEEeeeccccceeeeEEeccCce
Confidence            999999999 99999999988887  78999999999999999    77777788888888887664    455688889


Q ss_pred             eEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        295 YDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       295 ~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      +++..+|+-.++++|+.||.|+.-+|.+
T Consensus       259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  259 WALQSSPSFTHVYSGGRDGNIYRTDLRN  286 (735)
T ss_pred             EEEeeCCCcceEEecCCCCcEEecccCC
Confidence            9999999999999999999999877753

>KOG0772|consensus

Probab=99.93  E-value=3.6e-24  Score=174.32  Aligned_cols=233  Identities=19%  Similarity=0.205  Sum_probs=171.3

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc------eeEe-eccCCCeEEEEECCCCCEEEEEcCCCceEeeeEE
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK------ATKW-QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVW  152 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~------~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~  152 (323)
                      |+..|.++++.|.|.++++|+.|. .|+.||..+-      .+.+ +.....|.++.|++.|..|++.+.....+   ++
T Consensus       166 gtk~Vsal~~Dp~GaR~~sGs~Dy-~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak---l~  241 (641)
T KOG0772|consen  166 GTKIVSALAVDPSGARFVSGSLDY-TVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK---LL  241 (641)
T ss_pred             CceEEEEeeecCCCceeeeccccc-eEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee---EE
Confidence            677899999999999999998884 9999998764      1222 33456899999999999999998888899   99


Q ss_pred             eCCCCeeeEe-------------ecCCCceeEEEEecCC-CEEEEEeCC-eEEEEeCCCC--eeeecC-----CCCccEE
Q psy11524        153 DTDGRQLYSS-------------LTHDHPISSLAWAPGG-DMFAVGSYN-TLRLCDKVGW--SHSLDK-----PDTGSVY  210 (323)
Q Consensus       153 d~~~~~~~~~-------------~~~~~~v~~~~~~p~~-~~l~~~~~~-~i~i~d~~~~--~~~~~~-----~~~~~v~  210 (323)
                      |-+|..+..+             .+|...+++.+|+|+. ..|++++.| ++++||+...  ..+++.     +..-.++
T Consensus       242 DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~t  321 (641)
T KOG0772|consen  242 DRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVT  321 (641)
T ss_pred             ccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCce
Confidence            9876554433             5688889999999964 458888886 9999998642  222222     2334689


Q ss_pred             EEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeec-CCCCcc--ceEEEEEccCCCCccceEEEEeCCCCeEEEeccccc
Q psy11524        211 DLVWSNDATQIAGACANV-IHIFDISSSSSSNVTA-PLSHSH--EITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSL  286 (323)
Q Consensus       211 ~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~-~~~~~~--~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~~  286 (323)
                      .++|+|+|++||+|+.|| |.+|+..+......+. -..|..  .|++++||++|    ++|..-..++.+.+|++...-
T Consensus       322 sC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg----~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  322 SCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG----NYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             eeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc----chhhhccCCCceeeeeccccc
Confidence            999999999999999999 9999975432211110 234554  89999999999    555555556666666665531


Q ss_pred             CCC-------CccceeEEEEeeCCCeeEeeec------CCeEEEEEe
Q psy11524        287 DKP-------DTGSVYDLVWSSDATQIAGACA------NGSLLLGTI  320 (323)
Q Consensus       287 ~~~-------~~~~v~~~~~s~~g~~l~s~~~------dg~i~~~~l  320 (323)
                      ..+       ..-+-+.++|||+.++|++|+.      .|.+.+|+-
T Consensus       398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~  444 (641)
T KOG0772|consen  398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR  444 (641)
T ss_pred             cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence            000       1234578999999999998864      466777653

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=2e-22  Score=166.63  Aligned_cols=241  Identities=10%  Similarity=0.048  Sum_probs=165.9

Q ss_pred             ceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEE-cCCCceEee
Q psy11524         73 SLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSG-GEDCKYKAS  149 (323)
Q Consensus        73 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~i  149 (323)
                      +..+.+.+...+.+++|+|+|+.+++++..++.+++|+....  ...+..+. .+..++|+|+++.++++ +.++.++  
T Consensus        22 ~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~--   98 (300)
T TIGR03866        22 EVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVT--   98 (300)
T ss_pred             ceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEE--
Confidence            344455555557889999999988665555579999998764  33344333 35678999999877655 5688999  


Q ss_pred             eEEeCCCC-eeeEeecCCCceeEEEEecCCCEEEEEeCC--eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEe-
Q psy11524        150 FVWDTDGR-QLYSSLTHDHPISSLAWAPGGDMFAVGSYN--TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGAC-  225 (323)
Q Consensus       150 ~v~d~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-  225 (323)
                       +||++.. .+..+. ....+.+++|+|+|++++++..+  .+.+||..+............+..++|+|+|++|++++ 
T Consensus        99 -~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  176 (300)
T TIGR03866        99 -VIDIETRKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSE  176 (300)
T ss_pred             -EEECCCCeEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcC
Confidence             9999754 344443 33456889999999999988873  67788987554332212334567899999999886554 


Q ss_pred             cCc-EEEEEcCCCceeeeecCCCC-----ccceEEEEEccCCCCccceEEE-EeCCCCeEEEeccccc---CCCCcccee
Q psy11524        226 ANV-IHIFDISSSSSSNVTAPLSH-----SHEITQLAVNQTGSLQERHVAF-IDKNRDLYLSMWSHSL---DKPDTGSVY  295 (323)
Q Consensus       226 ~d~-i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~~p~g~~~d~~l~~-~~~~~~~~~~~~~~~~---~~~~~~~v~  295 (323)
                      .++ |++||+++++.+..+.+...     ......++|+|++    +.+.+ ...++.+.+|+.....   ...+...+.
T Consensus       177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg----~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~  252 (300)
T TIGR03866       177 IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDG----KTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVW  252 (300)
T ss_pred             CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCC----CEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcc
Confidence            578 99999999887665322211     1123468899998    44433 2334557777765430   011345788


Q ss_pred             EEEEeeCCCeeEee-ecCCeEEEEEeec
Q psy11524        296 DLVWSSDATQIAGA-CANGSLLLGTIIQ  322 (323)
Q Consensus       296 ~~~~s~~g~~l~s~-~~dg~i~~~~l~~  322 (323)
                      +++|+|+|++|+++ +.+|.|++|++.+
T Consensus       253 ~~~~~~~g~~l~~~~~~~~~i~v~d~~~  280 (300)
T TIGR03866       253 QLAFTPDEKYLLTTNGVSNDVSVIDVAA  280 (300)
T ss_pred             eEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            99999999999876 5699999999854

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0274|consensus

Probab=99.93  E-value=2.6e-23  Score=179.70  Aligned_cols=224  Identities=17%  Similarity=0.165  Sum_probs=188.4

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeE-eeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATK-WQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-  155 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-  155 (323)
                      +...+.+..|.  +.+++++..+ ..|.+|+....  +.. +.+|.+.|.++++..-+..+++|+.|.+++   +||.. 
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~-~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~r---vWd~~s  280 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDD-STLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTER---VWDCST  280 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCC-ceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEE---eEecCC
Confidence            46677888887  5567766666 58899998876  444 889999999999987788999999999999   99984 


Q ss_pred             CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCC-CCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEE
Q psy11524        156 GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKV-GWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIF  232 (323)
Q Consensus       156 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iw  232 (323)
                      +.+...+.+|...+.++...  ...+++|+.| +|++|+++ +..+.++.+|.++|+++..+  +.++++|+.|+ |++|
T Consensus       281 g~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW  356 (537)
T KOG0274|consen  281 GECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVW  356 (537)
T ss_pred             CcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEE
Confidence            88999999999999988875  4467777888 99999998 45666777799999999998  77999999999 9999


Q ss_pred             EcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----cCCCCccceeEEEEeeCCCeeE
Q psy11524        233 DISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----LDKPDTGSVYDLVWSSDATQIA  307 (323)
Q Consensus       233 d~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g~~l~  307 (323)
                      |+.+++++.+  +.+|...|.++.+.+.     ..+..+..|+.+++|++...     ++.+|.+-+..+.+  .+++|+
T Consensus       357 ~~~~~~cl~s--l~gH~~~V~sl~~~~~-----~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lv  427 (537)
T KOG0274|consen  357 DPRTGKCLKS--LSGHTGRVYSLIVDSE-----NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLV  427 (537)
T ss_pred             Ehhhceeeee--ecCCcceEEEEEecCc-----ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeE
Confidence            9999999999  8999999999988874     36677777777778877664     56677888866655  678999


Q ss_pred             eeecCCeEEEEEeec
Q psy11524        308 GACANGSLLLGTIIQ  322 (323)
Q Consensus       308 s~~~dg~i~~~~l~~  322 (323)
                      +++.|++|++|+..+
T Consensus       428 s~~aD~~Ik~WD~~~  442 (537)
T KOG0274|consen  428 SSSADGTIKLWDAEE  442 (537)
T ss_pred             eccccccEEEeeccc
Confidence            999999999998764

>KOG0274|consensus

Probab=99.93  E-value=5e-23  Score=177.92  Aligned_cols=254  Identities=18%  Similarity=0.236  Sum_probs=202.6

Q ss_pred             ccceeEeeEeccCCcceeeeeecccccccccee--------e--ecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCC
Q psy11524         43 YDGTVINYPISPYISVLHSYAASHSWPQALSLC--------R--TLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPN  112 (323)
Q Consensus        43 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~  112 (323)
                      +...+.+..+. ++     ++..+..+.++++|        .  ..+|.+.|.++++..-+..+++|+.| .++++||..
T Consensus       207 ~~~~~~~~q~~-~~-----~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D-~t~rvWd~~  279 (537)
T KOG0274|consen  207 DDHVVLCLQLH-DG-----FFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTD-KTERVWDCS  279 (537)
T ss_pred             Ccchhhhheee-cC-----eEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecC-CcEEeEecC
Confidence            45566677777 33     34444433333332        2  23599999999999877888888777 499999977


Q ss_pred             Cc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-e
Q psy11524        113 NK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-T  188 (323)
Q Consensus       113 ~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~  188 (323)
                      ..  ...+.+|...+.++...  +..+++|+.|.+|+   +|+++ +..+..+.+|..+|.++..+  +.++++|+.| +
T Consensus       280 sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVk---VW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~  352 (537)
T KOG0274|consen  280 TGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVK---VWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGT  352 (537)
T ss_pred             CCcEEEEecCCCceEEEEEcc--CceEeeccCCceEE---EEeccCcceEEEeccccccEEEEEec--CCEEEEEecCce
Confidence            66  77889999999998775  45788899999999   99997 66667777799999999997  7899999996 9


Q ss_pred             EEEEeCC-CCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCC-ceeeeecCCCCccceEEEEEccCCCCcc
Q psy11524        189 LRLCDKV-GWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSS-SSSNVTAPLSHSHEITQLAVNQTGSLQE  265 (323)
Q Consensus       189 i~i~d~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~p~g~~~d  265 (323)
                      |++||.. .+.+..+.+|...|.++.+.+. ..+++|+.|+ |++||+++. +++.+  +.+|..-+..+.+..      
T Consensus       353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t--l~~h~~~v~~l~~~~------  423 (537)
T KOG0274|consen  353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT--LQGHTSLVSSLLLRD------  423 (537)
T ss_pred             EEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh--hcCCccccccccccc------
Confidence            9999976 5677889999999999988775 7999999999 999999999 88888  788988887766543      


Q ss_pred             ceEEEEeCCCCeEEEecccc----cCCC-CccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        266 RHVAFIDKNRDLYLSMWSHS----LDKP-DTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       266 ~~l~~~~~~~~~~~~~~~~~----~~~~-~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +.+.....++.+++|+....    +... |.+.|..+++.  ...+++++.||.+++|++.
T Consensus       424 ~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~  482 (537)
T KOG0274|consen  424 NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLR  482 (537)
T ss_pred             ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecc
Confidence            56777778888888877665    3333 55778888775  4688999999999999985

>KOG0299|consensus

Probab=99.92  E-value=1.8e-23  Score=167.86  Aligned_cols=232  Identities=17%  Similarity=0.123  Sum_probs=186.0

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCce------------------eEe--eccCCCeEEEEECCCCCEEE
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKA------------------TKW--QAHDGLILKVAWCSSTDLIL  138 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~------------------~~~--~~~~~~v~~~~~~~~~~~l~  138 (323)
                      .|.-++.+++++|++++.++++.+ +.|.-|+...+.                  ...  ..|...+.+++.++||++||
T Consensus       140 ~H~~s~~~vals~d~~~~fsask~-g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla  218 (479)
T KOG0299|consen  140 KHQLSVTSVALSPDDKRVFSASKD-GTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA  218 (479)
T ss_pred             cccCcceEEEeeccccceeecCCC-cceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE
Confidence            489999999999999999998777 577777654321                  011  26778899999999999999


Q ss_pred             EEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEc
Q psy11524        139 SGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWS  215 (323)
Q Consensus       139 ~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~  215 (323)
                      +|+.|..|.   ||+.+ .+.+..+.+|.+.|.+++|-.....+++++.| .+++|++... .+..+.+|.+.|..+...
T Consensus       219 tgg~d~~v~---Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL  295 (479)
T KOG0299|consen  219 TGGRDRHVQ---IWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL  295 (479)
T ss_pred             ecCCCceEE---EecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh
Confidence            999999999   99995 67777889999999999999877789999987 9999999854 455788999999999998


Q ss_pred             CCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc---------
Q psy11524        216 NDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---------  285 (323)
Q Consensus       216 ~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---------  285 (323)
                      .-++.+.+|+.|. +++|++.....+-   +.++.+.+-+++|-.+.     .+.+++.+|.+.+|.+...         
T Consensus       296 ~reR~vtVGgrDrT~rlwKi~eesqli---frg~~~sidcv~~In~~-----HfvsGSdnG~IaLWs~~KKkplf~~~~A  367 (479)
T KOG0299|consen  296 SRERCVTVGGRDRTVRLWKIPEESQLI---FRGGEGSIDCVAFINDE-----HFVSGSDNGSIALWSLLKKKPLFTSRLA  367 (479)
T ss_pred             cccceEEeccccceeEEEeccccceee---eeCCCCCeeeEEEeccc-----ceeeccCCceEEEeeecccCceeEeecc
Confidence            8888888888999 9999996543332   57888899999998764     4445555555555544331         


Q ss_pred             --cCCC-----CccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        286 --LDKP-----DTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       286 --~~~~-----~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                        +...     +..+|++++..|...++++|+.+|.|++|.+.+
T Consensus       368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~  411 (479)
T KOG0299|consen  368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED  411 (479)
T ss_pred             ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence              1111     123899999999999999999999999999864

>KOG1539|consensus

Probab=99.92  E-value=6e-23  Score=175.92  Aligned_cols=285  Identities=18%  Similarity=0.178  Sum_probs=209.0

Q ss_pred             eeeeEeecccceeEeeEeccCCcceeeeeeccc---cc-cccceeeecCCC-CCEEEEEEcCCCCeEEEEeeCCeEEEEe
Q psy11524         35 KNHLTIRRYDGTVINYPISPYISVLHSYAASHS---WP-QALSLCRTLNVS-PPVYSAAWSPDSNKVLLTQAKSLVIKPL  109 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~~~~~v~~~  109 (323)
                      +...+++++...|+++.-+|--..++..+.+|-   .+ +..+.+..++|. ++|++++|..||..+.+.+...|.+.+|
T Consensus       193 K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~w  272 (910)
T KOG1539|consen  193 KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFW  272 (910)
T ss_pred             cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEE
Confidence            556778899999999999997766666666652   22 445566777886 9999999999999998888888999999


Q ss_pred             CCCCc---eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC-CC--CeeeEeecCCCceeEEEEe-cCCCEEE
Q psy11524        110 SPNNK---ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT-DG--RQLYSSLTHDHPISSLAWA-PGGDMFA  182 (323)
Q Consensus       110 ~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~-~~--~~~~~~~~~~~~v~~~~~~-p~~~~l~  182 (323)
                      |++++   ......|.+.|....|.|....+++++.|+.++ +|++|. ++  +.++.-.+|..+..+++|. .+|..+.
T Consensus       273 DLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk-~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~il  351 (910)
T KOG1539|consen  273 DLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLK-VWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFIL  351 (910)
T ss_pred             EcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCcee-EEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEE
Confidence            99987   223457889999999999999999999999887 444553 22  4445556677777777776 3566666


Q ss_pred             EEeCC-eEEEE-----------------------------------------------------------------eCCC
Q psy11524        183 VGSYN-TLRLC-----------------------------------------------------------------DKVG  196 (323)
Q Consensus       183 ~~~~~-~i~i~-----------------------------------------------------------------d~~~  196 (323)
                      +++.| +++.+                                                                 +.+.
T Consensus       352 sa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n  431 (910)
T KOG1539|consen  352 SAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN  431 (910)
T ss_pred             ecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccC
Confidence            65554 44444                                                                 3332


Q ss_pred             Cee-e-e-----cCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecC---CCCccceEEEEEccCCC---
Q psy11524        197 WSH-S-L-----DKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAP---LSHSHEITQLAVNQTGS---  262 (323)
Q Consensus       197 ~~~-~-~-----~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~p~g~---  262 (323)
                      ... . .     ++.....+++++.++.|++.+.|+..| |-+|++.+|-....  +   ..|..+|+.++...-++   
T Consensus       432 ~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~s--f~~~~ah~~~V~gla~D~~n~~~v  509 (910)
T KOG1539|consen  432 KTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKS--FGDSPAHKGEVTGLAVDGTNRLLV  509 (910)
T ss_pred             cccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecc--cccCccccCceeEEEecCCCceEE
Confidence            111 1 1     111235688999999999999999999 99999999987776  4   47899999999887763   


Q ss_pred             --CccceEEEEeCCCCeEEEecccc------------------------------------cCCCCccceeEEEEeeCCC
Q psy11524        263 --LQERHVAFIDKNRDLYLSMWSHS------------------------------------LDKPDTGSVYDLVWSSDAT  304 (323)
Q Consensus       263 --~~d~~l~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~v~~~~~s~~g~  304 (323)
                        +.++.+.+|+-.+.+.+-.+...                                    .+.+|+..|++++|||||+
T Consensus       510 sa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr  589 (910)
T KOG1539|consen  510 SAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR  589 (910)
T ss_pred             EccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc
Confidence              44455555554443321111100                                    3457899999999999999


Q ss_pred             eeEeeecCCeEEEEEeec
Q psy11524        305 QIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       305 ~l~s~~~dg~i~~~~l~~  322 (323)
                      +|++++.|++|++||+..
T Consensus       590 WlisasmD~tIr~wDlpt  607 (910)
T KOG1539|consen  590 WLISASMDSTIRTWDLPT  607 (910)
T ss_pred             EEEEeecCCcEEEEeccC
Confidence            999999999999999853

>KOG2048|consensus

Probab=99.92  E-value=3.5e-22  Score=167.64  Aligned_cols=232  Identities=17%  Similarity=0.197  Sum_probs=192.0

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc---eeEeecc-CCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC-
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK---ATKWQAH-DGLILKVAWCSSTDLILSGGEDCKYKASFVWDT-  154 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~---~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~-  154 (323)
                      ....|.+++|+.+.+.||++-.+ |.|.+|++...   ...+.++ ...|.+++|++ +..|.+.+-+|.|.   -||+ 
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~-g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~---EwDl~   98 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTD-GNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSIT---EWDLH   98 (691)
T ss_pred             eccceEEEEEeccCCceeeeccC-CcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEE---EEecc
Confidence            47889999999999999877555 79999999876   3344444 46799999995 56778889999999   9999 


Q ss_pred             CCCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeee---ecCCCCccEEEEEEcCCCCEEEEEecCc-E
Q psy11524        155 DGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHS---LDKPDTGSVYDLVWSNDATQIAGACANV-I  229 (323)
Q Consensus       155 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i  229 (323)
                      +.++...+....+.|++++.+|.+..++.|+++ .++.++.....+.   .+....+++.+++|+|++..|++|+.|| |
T Consensus        99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~I  178 (691)
T KOG2048|consen   99 TLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVI  178 (691)
T ss_pred             cCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceE
Confidence            688889999999999999999999999999885 7777776655443   3333568999999999999999999999 9


Q ss_pred             EEEEcCCCceeeeec-----CCC-CccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEE
Q psy11524        230 HIFDISSSSSSNVTA-----PLS-HSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVW  299 (323)
Q Consensus       230 ~iwd~~~~~~~~~~~-----~~~-~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~  299 (323)
                      ++||..++..+...+     +.. ...-|+++.|-.+     ++|+.+|..|.+.+|+...+    .+..|...|.+++.
T Consensus       179 riwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-----~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav  253 (691)
T KOG2048|consen  179 RIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-----STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAV  253 (691)
T ss_pred             EEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-----CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEE
Confidence            999999988766211     112 3446788888876     69999999999999999876    45567899999999


Q ss_pred             eeCCCeeEeeecCCeEEEEEee
Q psy11524        300 SSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       300 s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      .+++.++++++.|+.|..|.+.
T Consensus       254 ~~~~d~vfsaGvd~~ii~~~~~  275 (691)
T KOG2048|consen  254 ADNEDRVFSAGVDPKIIQYSLT  275 (691)
T ss_pred             cCCCCeEEEccCCCceEEEEec
Confidence            9999999999999999888764

>KOG0646|consensus

Probab=99.92  E-value=2.6e-23  Score=167.27  Aligned_cols=220  Identities=16%  Similarity=0.186  Sum_probs=183.0

Q ss_pred             CCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCce
Q psy11524         93 SNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPI  169 (323)
Q Consensus        93 ~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v  169 (323)
                      +.+++++....-.+.+|...++  .....--+++|.+++-+|+|.+|+.|...|.++   +|.+. |..+..+..|-..|
T Consensus        50 ~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lY---lWelssG~LL~v~~aHYQ~I  126 (476)
T KOG0646|consen   50 NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLY---LWELSSGILLNVLSAHYQSI  126 (476)
T ss_pred             hhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEE---EEEeccccHHHHHHhhccce
Confidence            3677777766668999988776  333344678899999999999999998999999   99995 77778888999999


Q ss_pred             eEEEEecCCCEEEEEeCC-eEEEEeCCC----------CeeeecCCCCccEEEEEEcCC--CCEEEEEecCc-EEEEEcC
Q psy11524        170 SSLAWAPGGDMFAVGSYN-TLRLCDKVG----------WSHSLDKPDTGSVYDLVWSND--ATQIAGACANV-IHIFDIS  235 (323)
Q Consensus       170 ~~~~~~p~~~~l~~~~~~-~i~i~d~~~----------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~-i~iwd~~  235 (323)
                      +++.|+.||.+|++|+.| .|.+|++..          .....+..|.-+|+++...+.  ..+|++++.|. +++||+.
T Consensus       127 TcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS  206 (476)
T KOG0646|consen  127 TCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS  206 (476)
T ss_pred             eEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEec
Confidence            999999999999999997 999998531          234567778999999988875  35899999999 9999999


Q ss_pred             CCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc--------------------cCCCCcc--c
Q psy11524        236 SSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS--------------------LDKPDTG--S  293 (323)
Q Consensus       236 ~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~--------------------~~~~~~~--~  293 (323)
                      .+..+.+   ......+.+++.+|.+    ..+.++..+|.+.+.++...                    .+.+|..  .
T Consensus       207 ~g~LLlt---i~fp~si~av~lDpae----~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~  279 (476)
T KOG0646|consen  207 LGVLLLT---ITFPSSIKAVALDPAE----RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESA  279 (476)
T ss_pred             cceeeEE---EecCCcceeEEEcccc----cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcc
Confidence            9999887   3455789999999997    88889999998876554331                    3445666  9


Q ss_pred             eeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        294 VYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       294 v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      |++++.+-||..|++|+.||.++||++.-
T Consensus       280 ITcLais~DgtlLlSGd~dg~VcvWdi~S  308 (476)
T KOG0646|consen  280 ITCLAISTDGTLLLSGDEDGKVCVWDIYS  308 (476)
T ss_pred             eeEEEEecCccEEEeeCCCCCEEEEecch
Confidence            99999999999999999999999999854

>KOG0294|consensus

Probab=99.92  E-value=1.4e-22  Score=155.66  Aligned_cols=233  Identities=17%  Similarity=0.226  Sum_probs=186.7

Q ss_pred             eeeeeEeecccceeEeeEeccCCcceeeeeeccccccccceee---------ecCCCCCEEEEEEcCCCC--eEEEEeeC
Q psy11524         34 VKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCR---------TLNVSPPVYSAAWSPDSN--KVLLTQAK  102 (323)
Q Consensus        34 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~sp~~~--~l~~~~~~  102 (323)
                      +.....+..|.+++.+++.+.      .++++|+-|.++++..         .+.|.+.|+++.|.+.-.  +|++|++|
T Consensus        33 l~~lF~~~aH~~sitavAVs~------~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdD  106 (362)
T KOG0294|consen   33 LKPLFAFSAHAGSITALAVSG------PYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDD  106 (362)
T ss_pred             eeccccccccccceeEEEecc------eeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCC
Confidence            344566789999999999984      6889998877776642         334999999999999775  88888766


Q ss_pred             CeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC-CCCeeeEeecCCCceeEEEEecCCC
Q psy11524        103 SLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT-DGRQLYSSLTHDHPISSLAWAPGGD  179 (323)
Q Consensus       103 ~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~-~~~~~~~~~~~~~~v~~~~~~p~~~  179 (323)
                       |.|.+|+...=  +..+.+|.+.|+.++.+|.+++.++.+.|+.++   .||+ +++.-..+ ......+.+.|+|.|.
T Consensus       107 -G~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr---~WNLV~Gr~a~v~-~L~~~at~v~w~~~Gd  181 (362)
T KOG0294|consen  107 -GHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLR---TWNLVRGRVAFVL-NLKNKATLVSWSPQGD  181 (362)
T ss_pred             -CcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceee---eehhhcCccceee-ccCCcceeeEEcCCCC
Confidence             79999998753  778999999999999999999999999999999   9998 44433322 2333445599999999


Q ss_pred             EEEEEeCCeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEE-
Q psy11524        180 MFAVGSYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAV-  257 (323)
Q Consensus       180 ~l~~~~~~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-  257 (323)
                      +|+.+..+.|-+|.+....+......+..+.++.|- ++.+|++|.+|. |.+||..+..+...  +..|...|.++.+ 
T Consensus       182 ~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~--~~AH~~RVK~i~~~  258 (362)
T KOG0294|consen  182 HFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTE--FLAHENRVKDIASY  258 (362)
T ss_pred             EEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCcccee--eecchhheeeeEEE
Confidence            999999999999998765443333344557777776 456899999999 99999998888888  7999999999985 


Q ss_pred             -ccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        258 -NQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       258 -~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                       .|++    .+|...+.+|.+++|++..
T Consensus       259 ~~~~~----~~lvTaSSDG~I~vWd~~~  282 (362)
T KOG0294|consen  259 TNPEH----EYLVTASSDGFIKVWDIDM  282 (362)
T ss_pred             ecCCc----eEEEEeccCceEEEEEccc
Confidence             4555    6888889999999998876

>KOG0308|consensus

Probab=99.92  E-value=7.3e-24  Score=176.87  Aligned_cols=230  Identities=18%  Similarity=0.223  Sum_probs=191.9

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc----eeEeeccCCCeEEEEE-CCCCCEEEEEcCCCceEeeeEEeC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK----ATKWQAHDGLILKVAW-CSSTDLILSGGEDCKYKASFVWDT  154 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~~i~v~d~  154 (323)
                      |...|..+...-+++.|++++.|. +|++|+....    ..++..|...|.++++ .++..++|+|+-|+.|.   +||+
T Consensus        72 HsDWVNDiiL~~~~~tlIS~SsDt-TVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~If---lWDi  147 (735)
T KOG0308|consen   72 HSDWVNDIILCGNGKTLISASSDT-TVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIF---LWDI  147 (735)
T ss_pred             hHhHHhhHHhhcCCCceEEecCCc-eEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEE---EEEc
Confidence            778899999999999999999885 9999997655    5677889999999999 77888999999999999   9999


Q ss_pred             CCC---ee--------eEee-cCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCC-CeeeecCCCCccEEEEEEcCCCCE
Q psy11524        155 DGR---QL--------YSSL-THDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQ  220 (323)
Q Consensus       155 ~~~---~~--------~~~~-~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~~  220 (323)
                      +..   .+        ..+. ++..+|++++.++.|..|++|+.. .+++||.+. .++..+.+|...|+.+..++||..
T Consensus       148 n~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~  227 (735)
T KOG0308|consen  148 NTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTR  227 (735)
T ss_pred             cCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCe
Confidence            622   11        2222 677889999999999888888885 999999874 466677799999999999999999


Q ss_pred             EEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----cCCCCccce
Q psy11524        221 IAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----LDKPDTGSV  294 (323)
Q Consensus       221 l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~v  294 (323)
                      +++++.|+ |++||+...+++.+  +..|...|+++..+|+-    ..+..++.++.++.-++...     +.+. ..+|
T Consensus       228 ~ls~sSDgtIrlWdLgqQrCl~T--~~vH~e~VWaL~~~~sf----~~vYsG~rd~~i~~Tdl~n~~~~tlick~-daPv  300 (735)
T KOG0308|consen  228 LLSASSDGTIRLWDLGQQRCLAT--YIVHKEGVWALQSSPSF----THVYSGGRDGNIYRTDLRNPAKSTLICKE-DAPV  300 (735)
T ss_pred             EeecCCCceEEeeeccccceeee--EEeccCceEEEeeCCCc----ceEEecCCCCcEEecccCCchhheEeecC-CCch
Confidence            99999999 99999999999999  78888889999999987    78999999999988877663     3333 5666


Q ss_pred             eEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        295 YDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       295 ~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      ..+..+...+-+=+++.|+.|+-|.+
T Consensus       301 ~~l~~~~~~~~~WvtTtds~I~rW~~  326 (735)
T KOG0308|consen  301 LKLHLHEHDNSVWVTTTDSSIKRWKL  326 (735)
T ss_pred             hhhhhccccCCceeeeccccceecCC
Confidence            66766644444466677888888865

>KOG0267|consensus

Probab=99.92  E-value=6.6e-25  Score=185.12  Aligned_cols=224  Identities=20%  Similarity=0.229  Sum_probs=192.6

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-C
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-G  156 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~  156 (323)
                      |...+.++..-..++.+++|+.+. .+-+|...+.  +..+.+|..+|.++.|+++..+|++|+.+|+|+   +||++ .
T Consensus        27 hsaav~~lk~~~s~r~~~~Gg~~~-k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK---~wDleeA  102 (825)
T KOG0267|consen   27 HSAAVGCLKIRKSSRSLVTGGEDE-KVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIK---VWDLEEA  102 (825)
T ss_pred             hhhhhceeeeeccceeeccCCCce-eeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCcee---eeehhhh
Confidence            788888888877788888887774 7888887765  566899999999999999999999999999999   99995 7


Q ss_pred             CeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCC-CCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEE
Q psy11524        157 RQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKV-GWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFD  233 (323)
Q Consensus       157 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd  233 (323)
                      +.++++.+|...+.++.|+|-+.+++.++.| .+++||.+ ..+.....+|...+..+.|+|+|++++.+++|. ++|||
T Consensus       103 k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d  182 (825)
T KOG0267|consen  103 KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWD  182 (825)
T ss_pred             hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeec
Confidence            8889999999999999999999999999887 99999988 567778888999999999999999999999999 99999


Q ss_pred             cCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEee
Q psy11524        234 ISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGA  309 (323)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~  309 (323)
                      ...|+...+  +..|.+.+..+.|+|..    -.+..++.+..+.+|++++.    ..+.....|.+.+|+|+|..+++|
T Consensus       183 ~~agk~~~e--f~~~e~~v~sle~hp~e----~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G  256 (825)
T KOG0267|consen  183 LTAGKLSKE--FKSHEGKVQSLEFHPLE----VLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSG  256 (825)
T ss_pred             ccccccccc--cccccccccccccCchh----hhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecC
Confidence            999999998  78899999999999986    55666666667777776642    111125789999999999998888


Q ss_pred             ecCC
Q psy11524        310 CANG  313 (323)
Q Consensus       310 ~~dg  313 (323)
                      ....
T Consensus       257 ~q~s  260 (825)
T KOG0267|consen  257 EQIS  260 (825)
T ss_pred             chhh
Confidence            6553

>KOG0264|consensus

Probab=99.92  E-value=3.4e-23  Score=166.09  Aligned_cols=237  Identities=20%  Similarity=0.286  Sum_probs=178.8

Q ss_pred             ecccceeEeeEeccCCcceee-eeecc---cccccc-----ce-------eeecCCCCCEEEEEEcCCCCeEEEEeeCCe
Q psy11524         41 RRYDGTVINYPISPYISVLHS-YAASH---SWPQAL-----SL-------CRTLNVSPPVYSAAWSPDSNKVLLTQAKSL  104 (323)
Q Consensus        41 ~~~~~~v~~~~~~~~~~~~~~-~~~~~---~~~~~~-----~~-------~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~  104 (323)
                      -.|.+.|+.+..-|....+.. ....+   .||.+.     ..       .+...|...-++++|++...-.+.++.+++
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            468999999999887543321 11111   133111     00       123347777888999997664444445557


Q ss_pred             EEEEeCCCCc---------eeEeeccCCCeEEEEECC-CCCEEEEEcCCCceEeeeEEeCC---CCeeeEeecCCCceeE
Q psy11524        105 VIKPLSPNNK---------ATKWQAHDGLILKVAWCS-STDLILSGGEDCKYKASFVWDTD---GRQLYSSLTHDHPISS  171 (323)
Q Consensus       105 ~v~~~~~~~~---------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~i~v~d~~---~~~~~~~~~~~~~v~~  171 (323)
                      .+.+||.+..         ...+.+|...|..++|++ +..++++++.|+.+.   |||++   .+......+|.+++.|
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~---iwD~R~~~~~~~~~~~ah~~~vn~  277 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLM---IWDTRSNTSKPSHSVKAHSAEVNC  277 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEE---EEEcCCCCCCCcccccccCCceeE
Confidence            9999997643         345789999999999999 457899999999999   99996   3445667789999999


Q ss_pred             EEEec-CCCEEEEEeCC-eEEEEeCCC--CeeeecCCCCccEEEEEEcCC-CCEEEEEecCc-EEEEEcCCCc-------
Q psy11524        172 LAWAP-GGDMFAVGSYN-TLRLCDKVG--WSHSLDKPDTGSVYDLVWSND-ATQIAGACANV-IHIFDISSSS-------  238 (323)
Q Consensus       172 ~~~~p-~~~~l~~~~~~-~i~i~d~~~--~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~-i~iwd~~~~~-------  238 (323)
                      ++|+| ++..||+|+.| +|++||+|.  .++..+.+|...|.++.|+|+ ...|++++.|+ +.+||+..-.       
T Consensus       278 ~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ed  357 (422)
T KOG0264|consen  278 VAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPED  357 (422)
T ss_pred             EEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhh
Confidence            99999 56678888887 999999985  456688899999999999995 45788888999 9999975321       


Q ss_pred             -------eeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc
Q psy11524        239 -------SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS  285 (323)
Q Consensus       239 -------~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~  285 (323)
                             ++..  ..+|...|..+.|+|...   -.|+....++.+.||.....
T Consensus       358 a~dgppEllF~--HgGH~~kV~DfsWnp~eP---W~I~SvaeDN~LqIW~~s~~  406 (422)
T KOG0264|consen  358 AEDGPPELLFI--HGGHTAKVSDFSWNPNEP---WTIASVAEDNILQIWQMAEN  406 (422)
T ss_pred             hccCCcceeEE--ecCcccccccccCCCCCC---eEEEEecCCceEEEeecccc
Confidence                   2233  568999999999999974   77788888888899988753

>KOG2106|consensus

Probab=99.92  E-value=5.2e-22  Score=161.45  Aligned_cols=261  Identities=17%  Similarity=0.229  Sum_probs=198.3

Q ss_pred             ccceeEeeEeccCCccee-eeeeccc--ccc-ccceee---ecC--CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCC
Q psy11524         43 YDGTVINYPISPYISVLH-SYAASHS--WPQ-ALSLCR---TLN--VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN  113 (323)
Q Consensus        43 ~~~~v~~~~~~~~~~~~~-~~~~~~~--~~~-~~~~~~---~~~--~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~  113 (323)
                      -+..|....|.|....+. .+..+..  |+. ...+.+   .++  ....|.|++|.++|+.+ +| +.+|.|.+|+..+
T Consensus       199 sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdvi-Tg-DS~G~i~Iw~~~~  276 (626)
T KOG2106|consen  199 SNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVI-TG-DSGGNILIWSKGT  276 (626)
T ss_pred             ccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEE-ee-cCCceEEEEeCCC
Confidence            355677889999754333 2222221  432 222222   222  34789999999999854 45 5558999999876


Q ss_pred             c--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCee--------------------------------
Q psy11524        114 K--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQL--------------------------------  159 (323)
Q Consensus       114 ~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~--------------------------------  159 (323)
                      .  .++...|.+.|.+++...+|.+|- |++|..|.   .||-+-+.+                                
T Consensus       277 ~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~---~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL  352 (626)
T KOG2106|consen  277 NRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKII---LWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFIL  352 (626)
T ss_pred             ceEEeEeeecCCceEEEEEecCccEee-cCccceEE---eccccccccccccCchhcCCeeEEecCCCcEEEeeccceEE
Confidence            6  444559999999999999987664 99999999   998521110                                


Q ss_pred             ---------eEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-
Q psy11524        160 ---------YSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-  228 (323)
Q Consensus       160 ---------~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-  228 (323)
                               ....+|......++.+|+...+++++.| .+++|+  ..++........++.++.|+|.| .++.|+..| 
T Consensus       353 ~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~  429 (626)
T KOG2106|consen  353 QGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGR  429 (626)
T ss_pred             EeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccce
Confidence                     1113466677889999999999999997 999999  33333333356789999999999 999999999 


Q ss_pred             EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc------cCCCCccceeEEEEeeC
Q psy11524        229 IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS------LDKPDTGSVYDLVWSSD  302 (323)
Q Consensus       229 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~s~~  302 (323)
                      ..+.|.++...+..   .....+++.++|+|+|    .++++++-++.+++|.+...      ..+.|..+|+.+.||+|
T Consensus       430 w~V~d~e~~~lv~~---~~d~~~ls~v~ysp~G----~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~D  502 (626)
T KOG2106|consen  430 WFVLDTETQDLVTI---HTDNEQLSVVRYSPDG----AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSD  502 (626)
T ss_pred             EEEEecccceeEEE---EecCCceEEEEEcCCC----CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCC
Confidence            99999999776665   3338899999999999    89999999999999988765      44456689999999999


Q ss_pred             CCeeEeeecCCeEEEEE
Q psy11524        303 ATQIAGACANGSLLLGT  319 (323)
Q Consensus       303 g~~l~s~~~dg~i~~~~  319 (323)
                      +++|.+-+-|-.|..|.
T Consensus       503 s~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  503 SQFLVSNSGDYEILYWK  519 (626)
T ss_pred             CceEEeccCceEEEEEc
Confidence            99999999999999993

>KOG1063|consensus

Probab=99.92  E-value=1.2e-22  Score=170.88  Aligned_cols=280  Identities=16%  Similarity=0.144  Sum_probs=212.8

Q ss_pred             eeEeecccceeEeeEeccCCcceeeeeeccccccccceeeec---------C----CCCCEEEEEEcCCCCeEEEEeeCC
Q psy11524         37 HLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTL---------N----VSPPVYSAAWSPDSNKVLLTQAKS  103 (323)
Q Consensus        37 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~~~v~~~~~sp~~~~l~~~~~~~  103 (323)
                      ...+.||.+.|..+.++|.|    .++.+.+-|++.+++...         .    |...++|++|-+....+++|++. 
T Consensus       354 ~~~iSGH~~~V~dv~W~psG----eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdE-  428 (764)
T KOG1063|consen  354 EPVISGHVDGVKDVDWDPSG----EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADE-  428 (764)
T ss_pred             ccccccccccceeeeecCCC----CEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccc-
Confidence            34578999999999999999    466677667776664333         2    89999999999865556655444 


Q ss_pred             eEEEEeCCCCc---------------------------------------------------------------------
Q psy11524        104 LVIKPLSPNNK---------------------------------------------------------------------  114 (323)
Q Consensus       104 ~~v~~~~~~~~---------------------------------------------------------------------  114 (323)
                      ..+++++....                                                                     
T Consensus       429 KVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Edq  508 (764)
T KOG1063|consen  429 KVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQ  508 (764)
T ss_pred             eeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHH
Confidence            57888763200                                                                     


Q ss_pred             ---------eeEeeccCCCeEEEEECCCCCEEEEEcCCCceE--eeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEE
Q psy11524        115 ---------ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYK--ASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFA  182 (323)
Q Consensus       115 ---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~--~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~  182 (323)
                               ..++.+|...|.+++.+|+|+++|++++.....  .|++|+.. -.....+..|.-.|+.++|||||++|+
T Consensus       509 Lq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LL  588 (764)
T KOG1063|consen  509 LQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLL  588 (764)
T ss_pred             HHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEE
Confidence                     012345777899999999999999998764432  35599985 455567899999999999999999999


Q ss_pred             EEeCC-eEEEEeCCCC-----eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCC--ceeeeecCCCCccceE
Q psy11524        183 VGSYN-TLRLCDKVGW-----SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSS--SSSNVTAPLSHSHEIT  253 (323)
Q Consensus       183 ~~~~~-~i~i~d~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~--~~~~~~~~~~~~~~v~  253 (323)
                      +.+.| ++.+|.....     .....+.|..-|.+..|+|++.+++|++.|+ +++|.....  +.+..+....+..+|+
T Consensus       589 svsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVT  668 (764)
T KOG1063|consen  589 SVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVT  668 (764)
T ss_pred             EeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCcee
Confidence            99998 9999996422     2224677999999999999999999999999 999998776  4444322456788999


Q ss_pred             EEEEccCCC-CccceEEEEeCCCCeEEEecc------cc----------cCCCCccceeEEEEeeCC----------Cee
Q psy11524        254 QLAVNQTGS-LQERHVAFIDKNRDLYLSMWS------HS----------LDKPDTGSVYDLVWSSDA----------TQI  306 (323)
Q Consensus       254 ~~~~~p~g~-~~d~~l~~~~~~~~~~~~~~~------~~----------~~~~~~~~v~~~~~s~~g----------~~l  306 (323)
                      .+++.|--. .....++++-..|.+.+|...      +.          -...|.+.|+.+.|+|..          ..|
T Consensus       669 Av~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~l  748 (764)
T KOG1063|consen  669 AVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNL  748 (764)
T ss_pred             eEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEE
Confidence            999987432 222477888888999999866      11          223457889999999762          357


Q ss_pred             EeeecCCeEEEEEee
Q psy11524        307 AGACANGSLLLGTII  321 (323)
Q Consensus       307 ~s~~~dg~i~~~~l~  321 (323)
                      ++|++|..++++++.
T Consensus       749 a~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  749 AVGGDDESVRIFNVD  763 (764)
T ss_pred             eeecccceeEEeecc
Confidence            999999999999874

>KOG1408|consensus

Probab=99.91  E-value=4e-23  Score=174.49  Aligned_cols=234  Identities=15%  Similarity=0.201  Sum_probs=194.1

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCC---CCEEEEEcCCCceEeeeEEeC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSS---TDLILSGGEDCKYKASFVWDT  154 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~i~v~d~  154 (323)
                      ....+.+++.||+|++||+|. ..|.+++|++...  ...+.+|...|.++.|+..   .++||+++.|.-|.   |||+
T Consensus       458 ~r~G~R~~~vSp~gqhLAsGD-r~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIH---V~Dv  533 (1080)
T KOG1408|consen  458 SRFGFRALAVSPDGQHLASGD-RGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIH---VYDV  533 (1080)
T ss_pred             cccceEEEEECCCcceecccC-ccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEE---EEec
Confidence            345799999999999999874 4479999998775  5667899999999999863   47899999999999   9999


Q ss_pred             C--CCeeeEeecCCCceeEEEEecCC--CEEEEEeCCeEEEEeCCC---CeeeecCC----CCccEEEEEEcCCCCEEEE
Q psy11524        155 D--GRQLYSSLTHDHPISSLAWAPGG--DMFAVGSYNTLRLCDKVG---WSHSLDKP----DTGSVYDLVWSNDATQIAG  223 (323)
Q Consensus       155 ~--~~~~~~~~~~~~~v~~~~~~p~~--~~l~~~~~~~i~i~d~~~---~~~~~~~~----~~~~v~~~~~~~~~~~l~~  223 (323)
                      .  -..+.++.+|...|+++.|..+|  ..+++++.|....|+...   ........    ....++.++..|..+++++
T Consensus       534 ~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t  613 (1080)
T KOG1408|consen  534 KRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT  613 (1080)
T ss_pred             ccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEE
Confidence            4  56778889999999999998876  668888888555566432   11111111    2346899999999999999


Q ss_pred             EecCc-EEEEEcCCCceeeeecC-CCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEE
Q psy11524        224 ACANV-IHIFDISSSSSSNVTAP-LSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDL  297 (323)
Q Consensus       224 ~~~d~-i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~  297 (323)
                      ++.|. |+|||+.+++..+.++- .+|.+....+...|.|    .+|+....+..+.++++..+    ...+|.+.|+.+
T Consensus       614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg----iY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~  689 (1080)
T KOG1408|consen  614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG----IYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGV  689 (1080)
T ss_pred             EecccceEEEeccccceeeeecccccCCCceEEEEECCCc----cEEEEeecCCceEEEEeccchhhhhhcCcchheeee
Confidence            99999 99999999999987321 2366778889999999    89999889999999998876    566789999999


Q ss_pred             EEeeCCCeeEeeecCCeEEEEEee
Q psy11524        298 VWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       298 ~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      .|.+|-++|++.+.||.|.+|++.
T Consensus       690 kF~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  690 KFLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             eecccchhheeecCCceEEEEECc
Confidence            999999999999999999999974

>KOG1274|consensus

Probab=99.91  E-value=1.1e-21  Score=170.02  Aligned_cols=261  Identities=17%  Similarity=0.137  Sum_probs=201.3

Q ss_pred             cccceeEeeEeccCCcceeeeeeccccccccceeeec---------C-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCC
Q psy11524         42 RYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTL---------N-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSP  111 (323)
Q Consensus        42 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~  111 (323)
                      .|......+.+.|+|+.+..+..    |+..+.|+..         . +...|.+++..  +.+|++++.+ +.|..|..
T Consensus        11 aht~G~t~i~~d~~gefi~tcgs----dg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~-~tv~~y~f   83 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGS----DGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQ-NTVLRYKF   83 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecC----CCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeecc-ceEEEeeC
Confidence            67778889999999975544444    4444444332         2 56667777664  4588888777 48888876


Q ss_pred             CCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-
Q psy11524        112 NNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-  187 (323)
Q Consensus       112 ~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-  187 (323)
                      ...  -..+....-++.+++++.+|+++|.|+.|-.|+   +.++. ......+.+|+++|.++.|+|++++||+.+-| 
T Consensus        84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK---~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG  160 (933)
T KOG1274|consen   84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVK---LLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDG  160 (933)
T ss_pred             CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEE---EEeccccchheeecccCCceeeeeEcCCCCEEEEEecCc
Confidence            554  224556677899999999999999999999999   99984 67778899999999999999999999999885 


Q ss_pred             eEEEEeCCCCeee-ecCC--------CCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEE
Q psy11524        188 TLRLCDKVGWSHS-LDKP--------DTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAV  257 (323)
Q Consensus       188 ~i~i~d~~~~~~~-~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  257 (323)
                      .|++||+....+. .+.+        ....+..++|+|+|..++..+.|+ |++|+..+++....++...+...+..++|
T Consensus       161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~w  240 (933)
T KOG1274|consen  161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQW  240 (933)
T ss_pred             eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEE
Confidence            9999999865332 1111        134577899999988888888888 99999999988887545556666999999


Q ss_pred             ccCCCCccceEEEEeCCCCeEEEecccccCCCCccceeEEEEeeCCCeeEeeecCCeEE
Q psy11524        258 NQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLL  316 (323)
Q Consensus       258 ~p~g~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~  316 (323)
                      +|.|    .+|+..+.++.+.+|++++.-.......|.+++|.|+.+.+-.-...|...
T Consensus       241 sPnG----~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~~n~it~~~~~g~~~  295 (933)
T KOG1274|consen  241 SPNG----KYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPNANAITLITALGTLG  295 (933)
T ss_pred             cCCC----cEEeeeccCCcEEEEecccchhccccceeEEEecCCCCCeeEEEeeccccc
Confidence            9999    899999999999999999621111157899999999988666555555433

>KOG1332|consensus

Probab=99.91  E-value=3.6e-23  Score=153.48  Aligned_cols=234  Identities=16%  Similarity=0.195  Sum_probs=175.3

Q ss_pred             cccceeEeeEeccCCcceeeeeecccc-------ccccceeeec-CCCCCEEEEEEcC--CCCeEEEEeeCCeEEEEeCC
Q psy11524         42 RYDGTVINYPISPYISVLHSYAASHSW-------PQALSLCRTL-NVSPPVYSAAWSP--DSNKVLLTQAKSLVIKPLSP  111 (323)
Q Consensus        42 ~~~~~v~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~v~~~~~sp--~~~~l~~~~~~~~~v~~~~~  111 (323)
                      .|.+.|-.+...=.|+.++++..++.-       ....++..+| +|.++|..++|..  .|..||+++.+ +.|.+|..
T Consensus         9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYD-gkVIiWke   87 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYD-GKVIIWKE   87 (299)
T ss_pred             hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecC-ceEEEEec
Confidence            455555555555456555444443321       1112334444 4999999999976  89999999887 69999988


Q ss_pred             CCc----eeEeeccCCCeEEEEECCC--CCEEEEEcCCCceEeeeEEeCCCC----eeeEeecCCCceeEEEEecC---C
Q psy11524        112 NNK----ATKWQAHDGLILKVAWCSS--TDLILSGGEDCKYKASFVWDTDGR----QLYSSLTHDHPISSLAWAPG---G  178 (323)
Q Consensus       112 ~~~----~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~i~v~d~~~~----~~~~~~~~~~~v~~~~~~p~---~  178 (323)
                      ++.    ......|...|++++|.|.  |-.|++++.||.|.   |.+.+..    .......|.-.|++++|.|.   |
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vs---vl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g  164 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVS---VLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG  164 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEE---EEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence            765    4566789999999999996  56899999999999   8887532    22345678899999999985   4


Q ss_pred             -----------CEEEEEeCC-eEEEEeCCCC---eeeecCCCCccEEEEEEcCCC----CEEEEEecCc-EEEEEcCCC-
Q psy11524        179 -----------DMFAVGSYN-TLRLCDKVGW---SHSLDKPDTGSVYDLVWSNDA----TQIAGACANV-IHIFDISSS-  237 (323)
Q Consensus       179 -----------~~l~~~~~~-~i~i~d~~~~---~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~-i~iwd~~~~-  237 (323)
                                 +.|++|+.| .|+||+....   ....+.+|.+.|+.++|.|.-    .+|++++.|+ +.||..+.. 
T Consensus       165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~  244 (299)
T KOG1332|consen  165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY  244 (299)
T ss_pred             cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence                       568999987 9999998752   334588899999999999953    4799999999 999976522 


Q ss_pred             -ceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        238 -SSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       238 -~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                       +...++ +......++.+.||+.|    +.|++...++++.+|.-..
T Consensus       245 e~wk~tl-l~~f~~~~w~vSWS~sG----n~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  245 EPWKKTL-LEEFPDVVWRVSWSLSG----NILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             Ccccccc-cccCCcceEEEEEeccc----cEEEEecCCcEEEEEEeCC
Confidence             122221 45567789999999999    8999999999999987544

>KOG1538|consensus

Probab=99.91  E-value=7.7e-23  Score=171.70  Aligned_cols=233  Identities=16%  Similarity=0.231  Sum_probs=176.6

Q ss_pred             CCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCee
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQL  159 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~  159 (323)
                      ..|..++|-|||..|+.+.++  .+.+||.+.+  +.++++|...|.+++|+.||+.+|+|+.|+.|.   +|+..-+-+
T Consensus        13 hci~d~afkPDGsqL~lAAg~--rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI---~W~~klEG~   87 (1081)
T KOG1538|consen   13 HCINDIAFKPDGTQLILAAGS--RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVI---IWTSKLEGI   87 (1081)
T ss_pred             cchheeEECCCCceEEEecCC--EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEE---Eecccccce
Confidence            389999999999999988665  6888888766  788999999999999999999999999999999   999753333


Q ss_pred             eEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCc
Q psy11524        160 YSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSS  238 (323)
Q Consensus       160 ~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~  238 (323)
                      ..+ .|...|.|+.|+|-.+.+++++-...-+|....+.+...+ ....+.+.+|..||++++.|-.+| |.+-+....+
T Consensus        88 LkY-SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEe  165 (1081)
T KOG1538|consen   88 LKY-SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEE  165 (1081)
T ss_pred             eee-ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCCCCc
Confidence            333 3788899999999999999999877778987755443322 456789999999999999999999 9988743333


Q ss_pred             eeeeecCCCCccceEEEEEccCCC-CccceEEEEeCCCCeEEEecccc--------------------------------
Q psy11524        239 SSNVTAPLSHSHEITQLAVNQTGS-LQERHVAFIDKNRDLYLSMWSHS--------------------------------  285 (323)
Q Consensus       239 ~~~~~~~~~~~~~v~~~~~~p~g~-~~d~~l~~~~~~~~~~~~~~~~~--------------------------------  285 (323)
                      ....-+..+.+.+|++++|+|... +.+..+++.|......++.+...                                
T Consensus       166 k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~  245 (1081)
T KOG1538|consen  166 KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ  245 (1081)
T ss_pred             ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCc
Confidence            333222456788999999999754 33444444444443333332221                                


Q ss_pred             ------------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        286 ------------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       286 ------------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                                  +...-...|+.++..|++++++.|+.||+|-.|++.
T Consensus       246 L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  246 LSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             eEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence                        111125678899999999999999999998888763

>KOG2106|consensus

Probab=99.91  E-value=4.6e-21  Score=156.00  Aligned_cols=270  Identities=13%  Similarity=0.161  Sum_probs=197.6

Q ss_pred             eeeeEeecccceeEeeEeccC-Ccceeeeeecc------ccc--cccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeE
Q psy11524         35 KNHLTIRRYDGTVINYPISPY-ISVLHSYAASH------SWP--QALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLV  105 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~  105 (323)
                      .....+......|.+++|++. +..+.-...++      .||  +..++-..-...+.|....|+|.+..++..... +.
T Consensus       145 ~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H  223 (626)
T KOG2106|consen  145 STLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GH  223 (626)
T ss_pred             eeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCC-ce
Confidence            334445566788999999985 32222222222      233  222222222357788999999988877766566 69


Q ss_pred             EEEeCCCCce-----eEeecc-CCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC-CeeeEeecCCCceeEEEEecCC
Q psy11524        106 IKPLSPNNKA-----TKWQAH-DGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG-RQLYSSLTHDHPISSLAWAPGG  178 (323)
Q Consensus       106 v~~~~~~~~~-----~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~-~~~~~~~~~~~~v~~~~~~p~~  178 (323)
                      ++.|+..+..     ..+..+ +..|.+++|.++|. +++|..+|.|.   ||+..+ +..+....|++.|.+++.-.+|
T Consensus       224 ~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~---Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G  299 (626)
T KOG2106|consen  224 LYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNIL---IWSKGTNRISKQVHAHDGGVFSLCMLRDG  299 (626)
T ss_pred             EEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEE---EEeCCCceEEeEeeecCCceEEEEEecCc
Confidence            9999887761     122222 36799999999886 56999999999   999963 4445556899999999999999


Q ss_pred             CEEEEEeCC-eEEEEeCC--CC-e--e------------------------------------eecCCCCccEEEEEEcC
Q psy11524        179 DMFAVGSYN-TLRLCDKV--GW-S--H------------------------------------SLDKPDTGSVYDLVWSN  216 (323)
Q Consensus       179 ~~l~~~~~~-~i~i~d~~--~~-~--~------------------------------------~~~~~~~~~v~~~~~~~  216 (323)
                      .++- |+.| .|..||-.  .. +  +                                    ....+|......++.+|
T Consensus       300 tllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp  378 (626)
T KOG2106|consen  300 TLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP  378 (626)
T ss_pred             cEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC
Confidence            7655 8888 99999832  10 0  0                                    12234666777889999


Q ss_pred             CCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCc
Q psy11524        217 DATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDT  291 (323)
Q Consensus       217 ~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~  291 (323)
                      +.+.+++++.|+ +++|+  ..++..+   .....++.++.|+|.|     .++++...|.-.+.+.++.    +... .
T Consensus       379 s~~q~~T~gqdk~v~lW~--~~k~~wt---~~~~d~~~~~~fhpsg-----~va~Gt~~G~w~V~d~e~~~lv~~~~d-~  447 (626)
T KOG2106|consen  379 SKNQLLTCGQDKHVRLWN--DHKLEWT---KIIEDPAECADFHPSG-----VVAVGTATGRWFVLDTETQDLVTIHTD-N  447 (626)
T ss_pred             ChhheeeccCcceEEEcc--CCceeEE---EEecCceeEeeccCcc-----eEEEeeccceEEEEecccceeEEEEec-C
Confidence            999999999999 99999  4455544   2345688999999984     8999999998888877764    2333 7


Q ss_pred             cceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        292 GSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       292 ~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      ++++.+.|+|+|.+||.|+.|+.|++|.+-
T Consensus       448 ~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs  477 (626)
T KOG2106|consen  448 EQLSVVRYSPDGAFLAVGSHDNHIYIYRVS  477 (626)
T ss_pred             CceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence            899999999999999999999999999874

>KOG2096|consensus

Probab=99.90  E-value=4.2e-22  Score=153.39  Aligned_cols=197  Identities=15%  Similarity=0.173  Sum_probs=154.9

Q ss_pred             eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC---CeeeE--eecCCCceeEEEEecCCCEEEEEeC-C-
Q psy11524        115 ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG---RQLYS--SLTHDHPISSLAWAPGGDMFAVGSY-N-  187 (323)
Q Consensus       115 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~---~~~~~--~~~~~~~v~~~~~~p~~~~l~~~~~-~-  187 (323)
                      +..+++|.+.|++++|+.||+.|++++.|++|+   +|+++.   +.-+.  ..-.-...+.++|+||-+-+++... + 
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir---~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~  155 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIR---LWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGN  155 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEE---EEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCC
Confidence            346789999999999999999999999999999   999842   11111  1112235788999999777666555 5 


Q ss_pred             eEEEEeCCCC-----ee--------eecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceE
Q psy11524        188 TLRLCDKVGW-----SH--------SLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEIT  253 (323)
Q Consensus       188 ~i~i~d~~~~-----~~--------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~  253 (323)
                      ++++|-+..+     ..        .....|...+..+-...++++|++++.|. |.+|+++ |+.+..  +......-+
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~--idtnq~~n~  232 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQS--IDTNQSSNY  232 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeee--ecccccccc
Confidence            9999985421     11        12223555677777778899999999999 9999988 888887  566666777


Q ss_pred             EEEEccCCCCccceEEEEeCCCCeEEEecccc------------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        254 QLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS------------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       254 ~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      ..+.||+|    +.|+...-...+.+|.+--.            .+++|...|..++||++...+++.+.||++++|++-
T Consensus       233 ~aavSP~G----RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  233 DAAVSPDG----RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             ceeeCCCC----cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            88999999    89999888888888876432            567899999999999999999999999999999973

>KOG0300|consensus

Probab=99.90  E-value=2.3e-22  Score=154.89  Aligned_cols=236  Identities=16%  Similarity=0.186  Sum_probs=195.1

Q ss_pred             eeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeee
Q psy11524         74 LCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASF  150 (323)
Q Consensus        74 ~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~  150 (323)
                      +.+.+ +|...|..++-......+.+++.|. .-.+|.++..  +.++.+|.+.|+++.|++.+.++++++.|++..   
T Consensus       140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADh-TA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taH---  215 (481)
T KOG0300|consen  140 LVRELEGHKDGIWHVAADSTQPICGTASADH-TARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAH---  215 (481)
T ss_pred             ehhhhcccccceeeehhhcCCcceeeccccc-ceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchH---
Confidence            34444 3899999999988777777777775 8889988765  788999999999999999999999999999999   


Q ss_pred             EEeC-------C--------C--------------------------CeeeEeecCCCceeEEEEecCCCEEEEEeCC-e
Q psy11524        151 VWDT-------D--------G--------------------------RQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-T  188 (323)
Q Consensus       151 v~d~-------~--------~--------------------------~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~  188 (323)
                      ||..       .        +                          -++..+.+|.+.|.+..|-..|+.+++++.| +
T Consensus       216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRT  295 (481)
T KOG0300|consen  216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRT  295 (481)
T ss_pred             HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccc
Confidence            8862       0        0                          1234567788889999999999999999998 9


Q ss_pred             EEEEeCC-CCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCc-eeeeecCCCCccceEEEEEccCCCCcc
Q psy11524        189 LRLCDKV-GWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSS-SSNVTAPLSHSHEITQLAVNQTGSLQE  265 (323)
Q Consensus       189 i~i~d~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~p~g~~~d  265 (323)
                      ..+||+. +..+..+.+|....+.++-+|..+++++.+.|. .++||++..- .+..  +++|...|+++.|..+.    
T Consensus       296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~V--FQGHtdtVTS~vF~~dd----  369 (481)
T KOG0300|consen  296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAV--FQGHTDTVTSVVFNTDD----  369 (481)
T ss_pred             ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeee--ecccccceeEEEEecCC----
Confidence            9999987 456678899999999999999999999999999 9999998432 3334  89999999999999874    


Q ss_pred             ceEEEEeCCCCeEEEecccc-----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        266 RHVAFIDKNRDLYLSMWSHS-----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       266 ~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                       .+..++.+..+++|++...     +.+. .++++.++.+..++.++.-.++..|++|++.
T Consensus       370 -~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDln  428 (481)
T KOG0300|consen  370 -RVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLN  428 (481)
T ss_pred             -ceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecC
Confidence             5666666777777777653     1222 6789999999999999999999999999985

>KOG0267|consensus

Probab=99.90  E-value=8e-24  Score=178.63  Aligned_cols=212  Identities=17%  Similarity=0.191  Sum_probs=180.9

Q ss_pred             eecccceeEeeEeccCCcceeeeeeccccccccceeee---------cCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeC
Q psy11524         40 IRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRT---------LNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLS  110 (323)
Q Consensus        40 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~  110 (323)
                      +-.|...|.++.+-..+    ..+.+|.|+....+|..         ..|..+|.++.|+++...|++|..+ |.|++||
T Consensus        24 ~~~hsaav~~lk~~~s~----r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaagsas-gtiK~wD   98 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSS----RSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSAS-GTIKVWD   98 (825)
T ss_pred             hhhhhhhhceeeeeccc----eeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccC-Cceeeee
Confidence            33566677777663334    45667777766555432         2399999999999999888877666 6999999


Q ss_pred             CCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC
Q psy11524        111 PNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN  187 (323)
Q Consensus       111 ~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~  187 (323)
                      +...  ++++.+|...+.++.|+|-+.+.|.++.|+.+.   +||.+ ..+...+.+|...+..++|+|+|++++.+++|
T Consensus        99 leeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~---iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed  175 (825)
T KOG0267|consen   99 LEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLK---IWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGED  175 (825)
T ss_pred             hhhhhhhhhhhccccCcceeeeccceEEeccccccccce---ehhhhccCceeeecCCcceeEEEeecCCCceeeccCCc
Confidence            9875  788999999999999999999999999999999   99997 78888888999999999999999999999997


Q ss_pred             -eEEEEeCC-CCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCC
Q psy11524        188 -TLRLCDKV-GWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTG  261 (323)
Q Consensus       188 -~i~i~d~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g  261 (323)
                       .+++||+. +.....+..|.+.+..+.|+|..-.+++|+.|. +++||+++.+.+..  .......|.+.+|+|++
T Consensus       176 ~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s--~~~~~~~v~~~~fn~~~  250 (825)
T KOG0267|consen  176 NTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS--GKPETDGVRSLAFNPDG  250 (825)
T ss_pred             ceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeec--cCCccCCceeeeecCCc
Confidence             99999986 555667788999999999999998999999999 99999999888876  55667899999999998

>KOG1273|consensus

Probab=99.90  E-value=1.4e-21  Score=150.33  Aligned_cols=235  Identities=18%  Similarity=0.161  Sum_probs=173.1

Q ss_pred             eeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeE
Q psy11524         74 LCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFV  151 (323)
Q Consensus        74 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v  151 (323)
                      +-.++.+.. ..|+.|++-|.+||+|..+ |.|.+||..+.  .+.+.+|..+|.+++||+||+.|++++.|..|.   +
T Consensus        17 l~~tld~~~-a~~~~Fs~~G~~lAvGc~n-G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~---l   91 (405)
T KOG1273|consen   17 LTHTLDNPL-AECCQFSRWGDYLAVGCAN-GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIK---L   91 (405)
T ss_pred             hceeccCCc-cceEEeccCcceeeeeccC-CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeE---E
Confidence            335555555 8899999999999999877 69999998776  667899999999999999999999999999999   9


Q ss_pred             EeCC-CCeeeEeecCCCceeEEEEecCCCE--EEEEeCCeEEEEeCCCCeeeecCC-----CCccEEEEEEcCCCCEEEE
Q psy11524        152 WDTD-GRQLYSSLTHDHPISSLAWAPGGDM--FAVGSYNTLRLCDKVGWSHSLDKP-----DTGSVYDLVWSNDATQIAG  223 (323)
Q Consensus       152 ~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~--l~~~~~~~i~i~d~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~  223 (323)
                      ||+. +.+++.+. ...+|....|+|..+-  +++--...-.+.++.......+..     ......+..|.+.|+++++
T Consensus        92 wDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIit  170 (405)
T KOG1273|consen   92 WDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIIT  170 (405)
T ss_pred             EeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEE
Confidence            9994 66666655 6789999999995333  333333244444544332222211     1122344568999999999


Q ss_pred             EecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccccCCC--------C----
Q psy11524        224 ACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKP--------D----  290 (323)
Q Consensus       224 ~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~~~~~--------~----  290 (323)
                      |...| +.++|..+.+++..+++.. ...|..+.++..|    ..+.+-..|..++.+++......+        |    
T Consensus       171 GtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g----~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD  245 (405)
T KOG1273|consen  171 GTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKG----RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD  245 (405)
T ss_pred             ecCcceEEEEecchheeeeeeeech-heeeeEEEEeccC----cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH
Confidence            99999 9999999999888743322 3688999999998    677776777777777766431111        1    


Q ss_pred             ---ccceeEEEEeeCCCeeEeeec-CCeEEEEE
Q psy11524        291 ---TGSVYDLVWSSDATQIAGACA-NGSLLLGT  319 (323)
Q Consensus       291 ---~~~v~~~~~s~~g~~l~s~~~-dg~i~~~~  319 (323)
                         ...-.+++||.+|.+++.++. -..+++|+
T Consensus       246 vVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE  278 (405)
T KOG1273|consen  246 VVNKLQWKKCCFSGDGEYVCAGSARAHALYIWE  278 (405)
T ss_pred             HHhhhhhhheeecCCccEEEeccccceeEEEEe
Confidence               123467899999999887764 45588886

>KOG0646|consensus

Probab=99.90  E-value=8.6e-22  Score=158.61  Aligned_cols=214  Identities=18%  Similarity=0.095  Sum_probs=176.2

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC---
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT---  154 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~---  154 (323)
                      -.++|.+++-+|+|.+|+.++-. +.+++|.+..+  +..+.+|-..|+++.|+.||.+|++|+.||.|.   +|.+   
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~-g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~---vW~l~~l  155 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTIS-GNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVL---VWLLTDL  155 (476)
T ss_pred             cccceeeeecCCCceEEEeeccc-CcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEE---EEEEEee
Confidence            57889999999999999876555 69999998877  556789999999999999999999999999999   9987   


Q ss_pred             -------CCCeeeEeecCCCceeEEEEecC--CCEEEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEE
Q psy11524        155 -------DGRQLYSSLTHDHPISSLAWAPG--GDMFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGA  224 (323)
Q Consensus       155 -------~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  224 (323)
                             ..+++..+..|.-+|+++...+.  ..++++++.| ++++||+....+......+..+.+++.+|.++.++.|
T Consensus       156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiG  235 (476)
T KOG0646|consen  156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIG  235 (476)
T ss_pred             cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEec
Confidence                   13567888999999999998775  4569999998 9999999866554444467789999999999999999


Q ss_pred             ecCc-EEEEEcCCCc----------------eeeeecCCCCcc--ceEEEEEccCCCCccceEEEEeCCCCeEEEecccc
Q psy11524        225 CANV-IHIFDISSSS----------------SSNVTAPLSHSH--EITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS  285 (323)
Q Consensus       225 ~~d~-i~iwd~~~~~----------------~~~~~~~~~~~~--~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~  285 (323)
                      +.+| |.+.++..-.                ....  +.+|..  .|++++.+-||    ..+.+++.+|.+++|++...
T Consensus       236 t~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~--~~Gh~~~~~ITcLais~Dg----tlLlSGd~dg~VcvWdi~S~  309 (476)
T KOG0646|consen  236 TEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINV--LVGHENESAITCLAISTDG----TLLLSGDEDGKVCVWDIYSK  309 (476)
T ss_pred             CCcceEEeeehhcCCcccccccccccccccceeee--eccccCCcceeEEEEecCc----cEEEeeCCCCCEEEEecchH
Confidence            9999 9888764321                2222  567776  99999999999    89999999999999999774


Q ss_pred             ----cCCCCccceeEEEEeeCC
Q psy11524        286 ----LDKPDTGSVYDLVWSSDA  303 (323)
Q Consensus       286 ----~~~~~~~~v~~~~~s~~g  303 (323)
                          +...-.++|+.+.+.|--
T Consensus       310 Q~iRtl~~~kgpVtnL~i~~~~  331 (476)
T KOG0646|consen  310 QCIRTLQTSKGPVTNLQINPLE  331 (476)
T ss_pred             HHHHHHhhhccccceeEeeccc
Confidence                222126788888886643

>KOG1524|consensus

Probab=99.90  E-value=2.9e-22  Score=164.16  Aligned_cols=209  Identities=21%  Similarity=0.355  Sum_probs=174.6

Q ss_pred             eEEEEeeCCeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEE
Q psy11524         95 KVLLTQAKSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLA  173 (323)
Q Consensus        95 ~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~  173 (323)
                      .++.++.| |.+.+.+..++ ...+.+|.+.+.+-.|+|||.-|+++++||.|+   +|.-.|....++.....+|.|++
T Consensus        77 ~~~i~s~D-Gkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iK---iWSrsGMLRStl~Q~~~~v~c~~  152 (737)
T KOG1524|consen   77 TLLICSND-GRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIK---IWSRSGMLRSTVVQNEESIRCAR  152 (737)
T ss_pred             eEEEEcCC-ceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEE---EEeccchHHHHHhhcCceeEEEE
Confidence            56666666 68888877666 567889999999999999999999999999999   99999888888888889999999


Q ss_pred             EecCCCEEEEEeCCeEEEEeCCC-CeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccc
Q psy11524        174 WAPGGDMFAVGSYNTLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHE  251 (323)
Q Consensus       174 ~~p~~~~l~~~~~~~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~  251 (323)
                      |.|+.+.++.+..+.+.|=-+.. ..+.....|.+-|.++.|+|..+.+++|++|- .++|| ..|..+.+  -..|..+
T Consensus       153 W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD-~~G~~Lf~--S~~~ey~  229 (737)
T KOG1524|consen  153 WAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWD-AQGANLFT--SAAEEYA  229 (737)
T ss_pred             ECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeec-ccCccccc--CChhccc
Confidence            99999888888777777777653 34556677999999999999999999999999 99999 45666666  5789999


Q ss_pred             eEEEEEccCCCCccceEEEEeCCCCeEEEecccccCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeecC
Q psy11524        252 ITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQR  323 (323)
Q Consensus       252 v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~~  323 (323)
                      |++++|+|+     ...++|+.+.- +       +.+...+.|..++||+||..++.|+..|.+.+-.++||
T Consensus       230 ITSva~npd-----~~~~v~S~nt~-R-------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq  288 (737)
T KOG1524|consen  230 ITSVAFNPE-----KDYLLWSYNTA-R-------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQ  288 (737)
T ss_pred             eeeeeeccc-----cceeeeeeeee-e-------ecCCCccceEEEEEcCCCceeeccccCceEEEeeeehh
Confidence            999999998     46777766432 2       12223789999999999999999999999988877664

>KOG0301|consensus

Probab=99.89  E-value=1.5e-21  Score=164.35  Aligned_cols=230  Identities=16%  Similarity=0.189  Sum_probs=186.6

Q ss_pred             eeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc----eeEeeccCCCeEE-EEECC-CCCEEEEEcCCCce
Q psy11524         74 LCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK----ATKWQAHDGLILK-VAWCS-STDLILSGGEDCKY  146 (323)
Q Consensus        74 ~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~v~~-~~~~~-~~~~l~~~~~d~~i  146 (323)
                      +.+++ .|...|..++..+.. .++.++.+ +.+++|+..++    ...+.+|.+-|.. +++-+ ++-.+++|+.|+.|
T Consensus         6 ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd-~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i   83 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTDGV-CIISGSRD-GTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI   83 (745)
T ss_pred             eEEEeccCccchheeEecCCe-EEeecCCC-CceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence            33444 489999998887654 67777666 58999998665    3456778777776 88876 45569999999999


Q ss_pred             EeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEE
Q psy11524        147 KASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGA  224 (323)
Q Consensus       147 ~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  224 (323)
                      .   +|.+. ..++..+.+|+..|.+++...++. +++|+.| ++++|-.... .....+|+..|..++.-|.+ .+++|
T Consensus        84 ~---v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l-~~~l~gH~asVWAv~~l~e~-~~vTg  157 (745)
T KOG0301|consen   84 I---VFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL-VYSLQGHTASVWAVASLPEN-TYVTG  157 (745)
T ss_pred             E---EEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhh-hcccCCcchheeeeeecCCC-cEEec
Confidence            9   99995 788899999999999999887777 8999998 9999987642 23378899999999999988 78999


Q ss_pred             ecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc---cCCCCccceeEEEEe
Q psy11524        225 CANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---LDKPDTGSVYDLVWS  300 (323)
Q Consensus       225 ~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s  300 (323)
                      +.|. |++|.-  ++.+++  +.+|...|+.+++-|++     .+..++-||.++.|++...   .+.+|..-|++++..
T Consensus       158 saDKtIklWk~--~~~l~t--f~gHtD~VRgL~vl~~~-----~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~  228 (745)
T KOG0301|consen  158 SADKTIKLWKG--GTLLKT--FSGHTDCVRGLAVLDDS-----HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMA  228 (745)
T ss_pred             cCcceeeeccC--Cchhhh--hccchhheeeeEEecCC-----CeEeecCCceEEEEeccCceeeeeeccceEEEEEEec
Confidence            9999 999984  677787  89999999999999985     4555566666666666433   445578999999988


Q ss_pred             eCCCeeEeeecCCeEEEEEe
Q psy11524        301 SDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       301 ~~g~~l~s~~~dg~i~~~~l  320 (323)
                      +++..+++++.|+++++|+.
T Consensus       229 ~~~~~Ivs~gEDrtlriW~~  248 (745)
T KOG0301|consen  229 LSDGLIVSTGEDRTLRIWKK  248 (745)
T ss_pred             CCCCeEEEecCCceEEEeec
Confidence            88889999999999999985

>KOG1539|consensus

Probab=99.89  E-value=3.5e-20  Score=159.22  Aligned_cols=278  Identities=14%  Similarity=0.157  Sum_probs=203.5

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeec-c---cccccccee-eec--CCCCCEEEEEEcCCCCeEEEEeeCC-eEEEEe
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAAS-H---SWPQALSLC-RTL--NVSPPVYSAAWSPDSNKVLLTQAKS-LVIKPL  109 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~-~~~--~~~~~v~~~~~sp~~~~l~~~~~~~-~~v~~~  109 (323)
                      .+++.-.+.|.+++|..||..+.....+ |   .||-..+.. ..+  .|.+.|....|-|....+++++.|+ ..++++
T Consensus       238 ~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vf  317 (910)
T KOG1539|consen  238 MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVF  317 (910)
T ss_pred             EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEe
Confidence            4455446999999999999644322222 2   377443322 222  2889999999999998888887774 234555


Q ss_pred             CCCCc----eeEeeccCCCeEEEEEC-CCCCEEEEEcCCCceE-------------------------------------
Q psy11524        110 SPNNK----ATKWQAHDGLILKVAWC-SSTDLILSGGEDCKYK-------------------------------------  147 (323)
Q Consensus       110 ~~~~~----~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~-------------------------------------  147 (323)
                      |....    ++.-.+|..+..++.|. .+|..+.+++.|++.+                                     
T Consensus       318 D~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~  397 (910)
T KOG1539|consen  318 DSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP  397 (910)
T ss_pred             eCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence            64443    45567899999999998 5788899999888665                                     


Q ss_pred             -------------------------eeeEEeCCCCee--eEe-----ecCCCceeEEEEecCCCEEEEEeC-CeEEEEeC
Q psy11524        148 -------------------------ASFVWDTDGRQL--YSS-----LTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDK  194 (323)
Q Consensus       148 -------------------------~i~v~d~~~~~~--~~~-----~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~  194 (323)
                                               ..+.|+...+..  ..+     ......+++++.++.|++.+.|.. |.|-+|++
T Consensus       398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNm  477 (910)
T KOG1539|consen  398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNM  477 (910)
T ss_pred             ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEc
Confidence                                     122344322221  011     112356889999999999888888 69999999


Q ss_pred             CCCeee-ec---CCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeee--------------------------
Q psy11524        195 VGWSHS-LD---KPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVT--------------------------  243 (323)
Q Consensus       195 ~~~~~~-~~---~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~--------------------------  243 (323)
                      .+.... .+   ..|.++|+.++...-++.+++++.+| +.+||..+...+..+                          
T Consensus       478 QSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~  557 (910)
T KOG1539|consen  478 QSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFS  557 (910)
T ss_pred             ccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCcee
Confidence            866444 33   46899999999999999999999999 999996554321110                          


Q ss_pred             -------------cCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc--cCCCC-ccceeEEEEeeCCCeeE
Q psy11524        244 -------------APLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS--LDKPD-TGSVYDLVWSSDATQIA  307 (323)
Q Consensus       244 -------------~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~s~~g~~l~  307 (323)
                                   .+.+|...|++++|||||    +.|.+.+.|+.+++|++.+.  +...+ ..+..++.|||+|.+||
T Consensus       558 I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg----rWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LA  633 (910)
T KOG1539|consen  558 IRVVDVVTRKVVREFWGHGNRITDMTFSPDG----RWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLA  633 (910)
T ss_pred             EEEEEchhhhhhHHhhccccceeeeEeCCCC----cEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEE
Confidence                         146799999999999999    89999999999999999885  11111 57789999999999999


Q ss_pred             eeecC-CeEEEEE
Q psy11524        308 GACAN-GSLLLGT  319 (323)
Q Consensus       308 s~~~d-g~i~~~~  319 (323)
                      ++..| .-|++|.
T Consensus       634 T~Hvd~~gIylWs  646 (910)
T KOG1539|consen  634 TVHVDQNGIYLWS  646 (910)
T ss_pred             EEEecCceEEEEE
Confidence            99999 5699985

>KOG0302|consensus

Probab=99.89  E-value=2.5e-21  Score=152.11  Aligned_cols=234  Identities=15%  Similarity=0.229  Sum_probs=176.8

Q ss_pred             eecCCCCCEEEEEEcCCCCeEEEE-eeCCeEEEEeCCCCc------------------eeEeeccCCCeEEEEECCCC-C
Q psy11524         76 RTLNVSPPVYSAAWSPDSNKVLLT-QAKSLVIKPLSPNNK------------------ATKWQAHDGLILKVAWCSST-D  135 (323)
Q Consensus        76 ~~~~~~~~v~~~~~sp~~~~l~~~-~~~~~~v~~~~~~~~------------------~~~~~~~~~~v~~~~~~~~~-~  135 (323)
                      +...|.+.++.+.-++-++-.+++ -.+.|.|++|++...                  +.++.+|.+.=.+++|||-. .
T Consensus       146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g  225 (440)
T KOG0302|consen  146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG  225 (440)
T ss_pred             cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence            344578888888888876544433 456689999986421                  45677888888999999932 3


Q ss_pred             EEEEEcCCCceEeeeEEeCCC-Ce---eeEeecCCCceeEEEEecC-CCEEEEEeCC-eEEEEeCCCC---eeeecCCCC
Q psy11524        136 LILSGGEDCKYKASFVWDTDG-RQ---LYSSLTHDHPISSLAWAPG-GDMFAVGSYN-TLRLCDKVGW---SHSLDKPDT  206 (323)
Q Consensus       136 ~l~~~~~d~~i~~i~v~d~~~-~~---~~~~~~~~~~v~~~~~~p~-~~~l~~~~~~-~i~i~d~~~~---~~~~~~~~~  206 (323)
                      .|++|.--+.|+   +|.... .-   ...+.+|...|-.++|||. ...|++|+.| +|+|||++..   .....+.|.
T Consensus       226 ~LlsGDc~~~I~---lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~  302 (440)
T KOG0302|consen  226 RLLSGDCVKGIH---LWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN  302 (440)
T ss_pred             ccccCccccceE---eeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC
Confidence            477887777888   999843 21   1345669999999999996 4568888887 9999999854   333457899


Q ss_pred             ccEEEEEEcCCCCEEEEEecCc-EEEEEcCC---CceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEec
Q psy11524        207 GSVYDLVWSNDATQIAGACANV-IHIFDISS---SSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMW  282 (323)
Q Consensus       207 ~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~---~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~  282 (323)
                      +.|+-+.|+....+|++|+.|| ++|||+++   ++++.+  +.-|..+|+++.|+|..   +..++....+..+.+|++
T Consensus       303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~--fk~Hk~pItsieW~p~e---~s~iaasg~D~QitiWDl  377 (440)
T KOG0302|consen  303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT--FKYHKAPITSIEWHPHE---DSVIAASGEDNQITIWDL  377 (440)
T ss_pred             CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee--EEeccCCeeEEEecccc---CceEEeccCCCcEEEEEe
Confidence            9999999999888999999999 99999985   567777  78899999999999987   377777888888888887


Q ss_pred             ccc-----------------------cCCCCccceeEEEEeeCCC-eeEeeecCCeEEEE
Q psy11524        283 SHS-----------------------LDKPDTGSVYDLVWSSDAT-QIAGACANGSLLLG  318 (323)
Q Consensus       283 ~~~-----------------------~~~~~~~~v~~~~~s~~g~-~l~s~~~dg~i~~~  318 (323)
                      ...                       ++.+ ...+..+.|++.-. +|++.+.||--.+.
T Consensus       378 svE~D~ee~~~~a~~~L~dlPpQLLFVHqG-Qke~KevhWH~QiPG~lvsTa~dGfnVfk  436 (440)
T KOG0302|consen  378 SVEADEEEIDQEAAEGLQDLPPQLLFVHQG-QKEVKEVHWHRQIPGLLVSTAIDGFNVFK  436 (440)
T ss_pred             eccCChhhhccccccchhcCCceeEEEecc-hhHhhhheeccCCCCeEEEecccceeEEE
Confidence            542                       1112 35677889998754 78888888864433

>KOG4283|consensus

Probab=99.89  E-value=1.6e-21  Score=148.62  Aligned_cols=195  Identities=23%  Similarity=0.307  Sum_probs=157.2

Q ss_pred             eccCCCeEEEEECC-CCCEEEEEcCCCceEeeeEEeCCCCe-----------e-----eEeecCCCceeEEEEec-CCCE
Q psy11524        119 QAHDGLILKVAWCS-STDLILSGGEDCKYKASFVWDTDGRQ-----------L-----YSSLTHDHPISSLAWAP-GGDM  180 (323)
Q Consensus       119 ~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~i~v~d~~~~~-----------~-----~~~~~~~~~v~~~~~~p-~~~~  180 (323)
                      ..|.+.|+++...+ .|+++++|+.||.|.   +||++...           +     ..-.+|+..|.++.|-| |.-.
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~---v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm  116 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIA---VFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM  116 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEE---EEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence            45889999999988 589999999999999   99994211           0     11135777899999999 5456


Q ss_pred             EEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCC---CCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEE
Q psy11524        181 FAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSND---ATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQL  255 (323)
Q Consensus       181 l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~  255 (323)
                      |.+++-| ++++||..+.........++.|++-+++|-   ..++|+|..+- |++.|+.+|..-.+  +.+|...|.++
T Consensus       117 FtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~--LsGHr~~vlaV  194 (397)
T KOG4283|consen  117 FTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT--LSGHRDGVLAV  194 (397)
T ss_pred             eecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee--eccccCceEEE
Confidence            6666668 999999987766655557889999999993   33566676677 99999999999988  89999999999


Q ss_pred             EEccCCCCccceEEEEeCCCCeEEEecccc-------------------cCCCCccceeEEEEeeCCCeeEeeecCCeEE
Q psy11524        256 AVNQTGSLQERHVAFIDKNRDLYLSMWSHS-------------------LDKPDTGSVYDLVWSSDATQIAGACANGSLL  316 (323)
Q Consensus       256 ~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-------------------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~  316 (323)
                      .|+|...   -.++.++.|+.+++|++...                   ....|.+.|++++|+.+|.++++++.|.+++
T Consensus       195 ~Wsp~~e---~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r  271 (397)
T KOG4283|consen  195 EWSPSSE---WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIR  271 (397)
T ss_pred             EeccCce---eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceE
Confidence            9999873   56667777777777777542                   2345778999999999999999999999999


Q ss_pred             EEEee
Q psy11524        317 LGTII  321 (323)
Q Consensus       317 ~~~l~  321 (323)
                      +|+..
T Consensus       272 ~wn~~  276 (397)
T KOG4283|consen  272 VWNME  276 (397)
T ss_pred             Eeecc
Confidence            99864

>KOG0269|consensus

Probab=99.89  E-value=4.8e-22  Score=169.17  Aligned_cols=231  Identities=15%  Similarity=0.219  Sum_probs=178.4

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-----e-eEe---eccCCCeEEEEECC-CCCEEEEEcCCCceEee
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-----A-TKW---QAHDGLILKVAWCS-STDLILSGGEDCKYKAS  149 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-----~-~~~---~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~i  149 (323)
                      -.....+|+.+++-..++.++..  .+.+|.....     . ..+   +.-.-.+..+.|.. +.++||+++..|.|.  
T Consensus        38 ~k~~~nAIs~nr~~~qiv~AGrs--~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~--  113 (839)
T KOG0269|consen   38 LKAKANAISVNRDINQIVVAGRS--LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVIS--  113 (839)
T ss_pred             cccccceEeecCCcceeEEeccc--ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEE--
Confidence            35677788888998888888765  4455543322     1 111   11112356778875 468999999999999  


Q ss_pred             eEEeCC----CCeeeEeecCCCceeEEEEecC-CCEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcC-CCCEE
Q psy11524        150 FVWDTD----GRQLYSSLTHDHPISSLAWAPG-GDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSN-DATQI  221 (323)
Q Consensus       150 ~v~d~~----~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l  221 (323)
                       +||+.    .+.+..+..|...++++.|++. ..+|++|+.| .|++||++.. ....+.+....|+.+.|+| .+.++
T Consensus       114 -vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F  192 (839)
T KOG0269|consen  114 -VWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKF  192 (839)
T ss_pred             -EEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceE
Confidence             99994    4566678899999999999994 6678899987 9999999854 5556666788899999999 67788


Q ss_pred             EEEecCc-EEEEEcCCCc-eeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-cCCCC----ccce
Q psy11524        222 AGACANV-IHIFDISSSS-SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-LDKPD----TGSV  294 (323)
Q Consensus       222 ~~~~~d~-i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-~~~~~----~~~v  294 (323)
                      +++.+.| +++||++... +...  +..|.++|.++.|+|++    ..|+.+..|+.+++|+.... ....|    ..+|
T Consensus       193 ~s~~dsG~lqlWDlRqp~r~~~k--~~AH~GpV~c~nwhPnr----~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv  266 (839)
T KOG0269|consen  193 ASIHDSGYLQLWDLRQPDRCEKK--LTAHNGPVLCLNWHPNR----EWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPV  266 (839)
T ss_pred             EEecCCceEEEeeccCchhHHHH--hhcccCceEEEeecCCC----ceeeecCCCccEEEEeccCCCccceeEEeeccee
Confidence            9999999 9999998754 3444  78999999999999988    89999999999999998854 11111    4789


Q ss_pred             eEEEEeeCCC-eeEeee--cCCeEEEEEee
Q psy11524        295 YDLVWSSDAT-QIAGAC--ANGSLLLGTII  321 (323)
Q Consensus       295 ~~~~~s~~g~-~l~s~~--~dg~i~~~~l~  321 (323)
                      ..+.|-|+.+ +|++++  .|-.|+||++.
T Consensus       267 ~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr  296 (839)
T KOG0269|consen  267 GRVKWRPARSYHLATCSMVVDTSVHVWDVR  296 (839)
T ss_pred             eeeeeccCccchhhhhhccccceEEEEeec
Confidence            9999999876 566554  57889999985

>KOG4328|consensus

Probab=99.88  E-value=1.3e-20  Score=151.63  Aligned_cols=275  Identities=14%  Similarity=0.126  Sum_probs=194.1

Q ss_pred             eeeeEeecccceeEeeEeccCCcceeeeeecc-------cccccc------ceeeecCCCCCEEEEEEcCCCC-eEEEEe
Q psy11524         35 KNHLTIRRYDGTVINYPISPYISVLHSYAASH-------SWPQAL------SLCRTLNVSPPVYSAAWSPDSN-KVLLTQ  100 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~~~------~~~~~~~~~~~v~~~~~sp~~~-~l~~~~  100 (323)
                      .....++-+.+.|.+++|+|....  ..++.|       .|+-..      +......|..+|.+|.|+|... .+++.+
T Consensus       177 ~~~~v~kv~~~Rit~l~fHPt~~~--~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS  254 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFHPTENR--KLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS  254 (498)
T ss_pred             eecceeEecccceEEEEecccCcc--eEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec
Confidence            444567888999999999997531  223333       355321      1122234899999999999654 555554


Q ss_pred             eCCeEEEEeCCCCc----eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC--CCeeeEeecCCCceeEEEE
Q psy11524        101 AKSLVIKPLSPNNK----ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD--GRQLYSSLTHDHPISSLAW  174 (323)
Q Consensus       101 ~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~--~~~~~~~~~~~~~v~~~~~  174 (323)
                      .| |.|+.-|.++.    +..+........++.|+.+...++.+..-|...   +||++  +.....+.-|+..|.++++
T Consensus       255 yD-GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~---~iD~R~~~s~~~~~~lh~kKI~sv~~  330 (498)
T KOG4328|consen  255 YD-GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFN---VIDLRTDGSEYENLRLHKKKITSVAL  330 (498)
T ss_pred             cC-ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceE---EEEeecCCccchhhhhhhcccceeec
Confidence            55 79999998876    233333455677888888888888888878888   99984  5667777888889999999


Q ss_pred             ecC-CCEEEEEeCC-eEEEEeCCC---Ce--eeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcC----CCceeee
Q psy11524        175 APG-GDMFAVGSYN-TLRLCDKVG---WS--HSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDIS----SSSSSNV  242 (323)
Q Consensus       175 ~p~-~~~l~~~~~~-~i~i~d~~~---~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~----~~~~~~~  242 (323)
                      +|. ..+||+++.| +.+|||++.   +.  ......|...|.++.|||.+-.|++.+.|. |+|||..    ...+..+
T Consensus       331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~  410 (498)
T KOG4328|consen  331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT  410 (498)
T ss_pred             CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence            995 4568888887 999999863   22  234566999999999999877799999999 9999973    3334443


Q ss_pred             ecCCC-Ccc--ceEEEEEccCCCCccceEEEEeCCCCeEEEecccc--cCCCCcc---cee-EEEEeeCCC-eeEeeecC
Q psy11524        243 TAPLS-HSH--EITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS--LDKPDTG---SVY-DLVWSSDAT-QIAGACAN  312 (323)
Q Consensus       243 ~~~~~-~~~--~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~--~~~~~~~---~v~-~~~~s~~g~-~l~s~~~d  312 (323)
                      +.... +..  .....+|.|+.    ..|.++.....+.+++-...  +...|..   .|. -..|+|-+. +++.++..
T Consensus       411 I~Hn~~t~RwlT~fKA~W~P~~----~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~  486 (498)
T KOG4328|consen  411 IPHNNRTGRWLTPFKAAWDPDY----NLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSS  486 (498)
T ss_pred             eeccCcccccccchhheeCCCc----cEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCcc
Confidence            21111 112  23456899987    89999988888888887665  3444432   232 358999988 55556667


Q ss_pred             CeEEEEE
Q psy11524        313 GSLLLGT  319 (323)
Q Consensus       313 g~i~~~~  319 (323)
                      |.|+||.
T Consensus       487 Gki~vft  493 (498)
T KOG4328|consen  487 GKIYVFT  493 (498)
T ss_pred             ceEEEEe
Confidence            8888875

>KOG4328|consensus

Probab=99.88  E-value=6.1e-21  Score=153.42  Aligned_cols=233  Identities=14%  Similarity=0.129  Sum_probs=178.7

Q ss_pred             CCCCEEEEEEcCCCC-eEEEEeeCCeEEEEeCCCC--c----eeEeeccCCCeEEEEECCC-CCEEEEEcCCCceEeeeE
Q psy11524         80 VSPPVYSAAWSPDSN-KVLLTQAKSLVIKPLSPNN--K----ATKWQAHDGLILKVAWCSS-TDLILSGGEDCKYKASFV  151 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~-~l~~~~~~~~~v~~~~~~~--~----~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~i~v  151 (323)
                      +.++|++++|+|... .++.+|+..|.|-+|+..+  +    ...+..|.++|.++.|+|. ...+++.+.||+|+   .
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR---~  261 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR---L  261 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee---e
Confidence            789999999999776 6666777779999999842  1    6678899999999999995 56899999999999   9


Q ss_pred             EeCCCCee---eEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCC--eeeecCCCCccEEEEEEcCC-CCEEEEE
Q psy11524        152 WDTDGRQL---YSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGW--SHSLDKPDTGSVYDLVWSND-ATQIAGA  224 (323)
Q Consensus       152 ~d~~~~~~---~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~--~~~~~~~~~~~v~~~~~~~~-~~~l~~~  224 (323)
                      -|+++...   .........+.++.|+.+...++++.. |...+||++..  ....+.-|...|.+++++|. -.+|+++
T Consensus       262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~  341 (498)
T KOG4328|consen  262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATA  341 (498)
T ss_pred             eeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeec
Confidence            99975433   333334456778889887777777777 89999998743  34455558889999999994 4578999


Q ss_pred             ecCc-EEEEEcCCCceeee--ecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc---------cCCC--C
Q psy11524        225 CANV-IHIFDISSSSSSNV--TAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---------LDKP--D  290 (323)
Q Consensus       225 ~~d~-i~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---------~~~~--~  290 (323)
                      +.|+ .+|||++.-.....  +....|...|.++.|||.+    +.|..-+.+..+++|+....         +...  +
T Consensus       342 s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~----gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t  417 (498)
T KOG4328|consen  342 SLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG----GTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRT  417 (498)
T ss_pred             ccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC----CceEeeccCCceEEeecccccccCCccceeeccCcc
Confidence            9999 99999986433321  2256799999999999998    77888888888888887411         1111  1


Q ss_pred             c--cceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        291 T--GSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       291 ~--~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      .  -......|.|+..++++|-.-..|-|++
T Consensus       418 ~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~  448 (498)
T KOG4328|consen  418 GRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD  448 (498)
T ss_pred             cccccchhheeCCCccEEEEeccCcceeEEc
Confidence            1  1234568999999999998887777765

>KOG4283|consensus

Probab=99.88  E-value=3.6e-20  Score=141.36  Aligned_cols=273  Identities=17%  Similarity=0.216  Sum_probs=188.6

Q ss_pred             EeecccceeEeeEeccC-Ccceeeeeeccc---cccc--------ccee---e------ecCCCCCEEEEEEcCCCCeEE
Q psy11524         39 TIRRYDGTVINYPISPY-ISVLHSYAASHS---WPQA--------LSLC---R------TLNVSPPVYSAAWSPDSNKVL   97 (323)
Q Consensus        39 ~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~---~~~~--------~~~~---~------~~~~~~~v~~~~~sp~~~~l~   97 (323)
                      ..+.|.+.|+++.+.|. |..+.+..++|+   ||-.        .-+.   .      .-.|...|..+.|-|-..-++
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            35678999999999986 665555555553   3311        0011   1      112778999999999555444


Q ss_pred             EEeeCCeEEEEeCCCCc-eeEeeccCCCeEEEEECCC---CCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEE
Q psy11524         98 LTQAKSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSS---TDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSL  172 (323)
Q Consensus        98 ~~~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~  172 (323)
                      +.+.-+..+++||.++. ...-...++.|.+-+|+|-   ..++|+|..+-.|+   +-|+. +.....+.+|...|.++
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~Vr---LCDi~SGs~sH~LsGHr~~vlaV  194 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVR---LCDIASGSFSHTLSGHRDGVLAV  194 (397)
T ss_pred             ecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEE---EEeccCCcceeeeccccCceEEE
Confidence            44444459999999876 2223356788888899983   45889999999999   99995 78889999999999999


Q ss_pred             EEecCCCE-EEEEeCC-eEEEEeCCC--Ceee--------------ecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEE
Q psy11524        173 AWAPGGDM-FAVGSYN-TLRLCDKVG--WSHS--------------LDKPDTGSVYDLVWSNDATQIAGACANV-IHIFD  233 (323)
Q Consensus       173 ~~~p~~~~-l~~~~~~-~i~i~d~~~--~~~~--------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd  233 (323)
                      .|+|...+ |++|+.| .|++||++.  .+..              .-..|.+.+..++|+.+|.++++++.|. +++|+
T Consensus       195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn  274 (397)
T KOG4283|consen  195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN  274 (397)
T ss_pred             EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence            99998877 5666666 999999863  2222              1234677899999999999999999999 99999


Q ss_pred             cCCCceeee-ecCCCCcc----ceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCC
Q psy11524        234 ISSSSSSNV-TAPLSHSH----EITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDAT  304 (323)
Q Consensus       234 ~~~~~~~~~-~~~~~~~~----~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~  304 (323)
                      ..+|+.... +-...|+.    .+. +. +.+.    ..+...-.++.+.+.++-.+    ....|...+.+.++-|+-+
T Consensus       275 ~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s----~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq  348 (397)
T KOG4283|consen  275 MESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDS----DVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFE  348 (397)
T ss_pred             cccCcccccccccccccccccceEE-Ee-eccc----ceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchh
Confidence            988764321 00001111    111 11 1222    22333333344444444332    3344788899999999999


Q ss_pred             eeEeeecCCeEEEEEe
Q psy11524        305 QIAGACANGSLLLGTI  320 (323)
Q Consensus       305 ~l~s~~~dg~i~~~~l  320 (323)
                      .+.++..|+.|..|-.
T Consensus       349 ~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  349 QCFTGDMNGNIYMWSP  364 (397)
T ss_pred             hhhccccCCccccccc
Confidence            9999999999999864

>KOG2048|consensus

Probab=99.88  E-value=3.3e-19  Score=149.96  Aligned_cols=268  Identities=13%  Similarity=0.175  Sum_probs=199.7

Q ss_pred             EeecccceeEeeEeccCCcceeeeeecc---ccccccc--eeeec--CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCC
Q psy11524         39 TIRRYDGTVINYPISPYISVLHSYAASH---SWPQALS--LCRTL--NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSP  111 (323)
Q Consensus        39 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~  111 (323)
                      .+.--...|.+++|+...+.++..-++|   .|+....  +...+  .....|.+++|++.+ +|++.+.+ |.|.-||+
T Consensus        20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~s-g~i~EwDl   97 (691)
T KOG2048|consen   20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLS-GSITEWDL   97 (691)
T ss_pred             EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCC-ceEEEEec
Confidence            3444578899999998876655443333   2432211  11112  257889999999554 56666566 69999998


Q ss_pred             CCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeee---EeecCCCceeEEEEecCCCEEEEEeC
Q psy11524        112 NNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLY---SSLTHDHPISSLAWAPGGDMFAVGSY  186 (323)
Q Consensus       112 ~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~---~~~~~~~~v~~~~~~p~~~~l~~~~~  186 (323)
                      .+.  ...+....+.|++++.+|.+..++.|+.||.+.   .++.....+.   .+...++.+.+++|+|++..+++|+.
T Consensus        98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~---~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~  174 (691)
T KOG2048|consen   98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLY---DFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI  174 (691)
T ss_pred             ccCceeEEecCCCcceeEEEeCCccceEEeecCCceEE---EEecCCceEEEEeecccccceEEEEEecCCccEEEeccc
Confidence            876  556677889999999999999999999999666   6666654443   23445689999999999999999999


Q ss_pred             C-eEEEEeCCCC-eeee----cCC----CCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEE
Q psy11524        187 N-TLRLCDKVGW-SHSL----DKP----DTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQL  255 (323)
Q Consensus       187 ~-~i~i~d~~~~-~~~~----~~~----~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~  255 (323)
                      | .|++||.... ....    ...    ...-|.++.|-.++ .|++|..-| |.+||...+..++.  +..|...|.++
T Consensus       175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS--~~~h~adVl~L  251 (691)
T KOG2048|consen  175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQS--HSCHDADVLAL  251 (691)
T ss_pred             CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhh--hhhhhcceeEE
Confidence            7 7999997643 3331    111    12236777777666 688998899 99999999999988  78899999999


Q ss_pred             EEccCCCCccceEEEEeCCCCeEEEecccc--------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        256 AVNQTGSLQERHVAFIDKNRDLYLSMWSHS--------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       256 ~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      +..+++    .++.+...++.+..+.....        ...+|...|.+++..++  .|++|+.|.++.+-.+
T Consensus       252 av~~~~----d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s  318 (691)
T KOG2048|consen  252 AVADNE----DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS  318 (691)
T ss_pred             EEcCCC----CeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence            999997    67777777777665554432        45678899999999887  8999999999887544

>KOG1007|consensus

Probab=99.88  E-value=4.7e-20  Score=140.30  Aligned_cols=268  Identities=21%  Similarity=0.261  Sum_probs=189.9

Q ss_pred             hhcceeeeeeEeecccceeEeeEeccCCcceeeeeeccccccccceeeec-CCCCCEEEEEEcCCCCeEEEEeeC----C
Q psy11524         29 EVLRFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAK----S  103 (323)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~----~  103 (323)
                      +...++-....++. +..|.-+.+.+.+..+.              .+.| .|.+.|..++-+|..+.++++...    .
T Consensus        25 d~icFlvgTnslK~-dNqVhll~~d~e~s~l~--------------skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s   89 (370)
T KOG1007|consen   25 DHICFLVGTNSLKE-DNQVHLLRLDSEGSELL--------------SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDS   89 (370)
T ss_pred             cceEEEEeccccCC-cceeEEEEecCccchhh--------------hhhhhcCCcceehhhcCCCCCceEEEEEeccCCC
Confidence            34445544444443 36677777777653221              1333 368899999999977766554322    1


Q ss_pred             ---eEEEEeCCCCcee-----------Eee-ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCe-eeEee---
Q psy11524        104 ---LVIKPLSPNNKAT-----------KWQ-AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQ-LYSSL---  163 (323)
Q Consensus       104 ---~~v~~~~~~~~~~-----------~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~-~~~~~---  163 (323)
                         -..-+|.+.+...           .+. .+-+.|.++.|.|++..+++-. |..|.   +|+++ +.. ...+.   
T Consensus        90 ~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~---l~~l~ess~~vaev~ss~  165 (370)
T KOG1007|consen   90 GVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIV---LWSLDESSKIVAEVLSSE  165 (370)
T ss_pred             cceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceE---EEEcccCcchheeecccc
Confidence               1356787655421           122 4556899999999999988776 77888   99995 322 22221   


Q ss_pred             --cCCCceeEEEEec--CCCEEEEEeCCeEEEEeCCCCe--eeecCCCCccEEEEEEcCCCC-EEEEEecCc-EEEEEcC
Q psy11524        164 --THDHPISSLAWAP--GGDMFAVGSYNTLRLCDKVGWS--HSLDKPDTGSVYDLVWSNDAT-QIAGACANV-IHIFDIS  235 (323)
Q Consensus       164 --~~~~~v~~~~~~p--~~~~l~~~~~~~i~i~d~~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~-i~iwd~~  235 (323)
                        .+....++-+|+|  ||+.+++.++.++..||+++..  ......|...++.+.|+|+.+ +|+++++|+ |++||.+
T Consensus       166 s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R  245 (370)
T KOG1007|consen  166 SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR  245 (370)
T ss_pred             cccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc
Confidence              2355678889999  7999999888899999998643  234556888999999999766 577888888 9999998


Q ss_pred             C-CceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----------------------------
Q psy11524        236 S-SSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----------------------------  285 (323)
Q Consensus       236 ~-~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----------------------------  285 (323)
                      . ..++.+  +.+|...|+++.|+|.-   |..|..++.|..+.++.....                             
T Consensus       246 ~tk~pv~e--l~~HsHWvW~VRfn~~h---dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~d  320 (370)
T KOG1007|consen  246 KTKFPVQE--LPGHSHWVWAVRFNPEH---DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQD  320 (370)
T ss_pred             CCCccccc--cCCCceEEEEEEecCcc---ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccc
Confidence            6 456777  79999999999999976   466666666666665543221                             


Q ss_pred             ----cCCCCccceeEEEEeeCCC-eeEeeecCCeEEEEEe
Q psy11524        286 ----LDKPDTGSVYDLVWSSDAT-QIAGACANGSLLLGTI  320 (323)
Q Consensus       286 ----~~~~~~~~v~~~~~s~~g~-~l~s~~~dg~i~~~~l  320 (323)
                          .+..|...|++++||.-.. .+|+-+.||++.|-++
T Consensus       321 g~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  321 GQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             cccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence                3345788999999998776 5668999999988665

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.88  E-value=3.6e-19  Score=147.16  Aligned_cols=235  Identities=11%  Similarity=0.034  Sum_probs=157.4

Q ss_pred             EeecccceeEeeEeccCCcceeeee-ecc---ccc-cccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCC
Q psy11524         39 TIRRYDGTVINYPISPYISVLHSYA-ASH---SWP-QALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN  113 (323)
Q Consensus        39 ~~~~~~~~v~~~~~~~~~~~~~~~~-~~~---~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~  113 (323)
                      .+..+. .+..+.|+|++..++... ..+   .|+ .+.+....+.....+..++|+|+++.+++++..++.+++||...
T Consensus        26 ~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~  104 (300)
T TIGR03866        26 TFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIET  104 (300)
T ss_pred             EEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            344443 356799999986543221 111   244 33344444544455678999999998877766557999999876


Q ss_pred             c--eeEeeccCCCeEEEEECCCCCEEEEEcCCC-ceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC-C-e
Q psy11524        114 K--ATKWQAHDGLILKVAWCSSTDLILSGGEDC-KYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-N-T  188 (323)
Q Consensus       114 ~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~-~  188 (323)
                      .  +..+. +...+.+++|+|+|+++++++.++ .+.   +||.+.............+.+++|+|+++++++++. + .
T Consensus       105 ~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  180 (300)
T TIGR03866       105 RKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAH---FIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGT  180 (300)
T ss_pred             CeEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEE---EEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCE
Confidence            5  22332 334568899999999999888765 456   779864443322223345678999999998876654 5 9


Q ss_pred             EEEEeCCCCee-eecCCC-------CccEEEEEEcCCCCEEEEE-ecCc-EEEEEcCCCceeeeecCCCCccceEEEEEc
Q psy11524        189 LRLCDKVGWSH-SLDKPD-------TGSVYDLVWSNDATQIAGA-CANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVN  258 (323)
Q Consensus       189 i~i~d~~~~~~-~~~~~~-------~~~v~~~~~~~~~~~l~~~-~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  258 (323)
                      +++||+.+... ..+..+       ......++|+|++++++++ ..++ +.+||.++++.+..  . .+...+.+++|+
T Consensus       181 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~--~-~~~~~~~~~~~~  257 (300)
T TIGR03866       181 VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDY--L-LVGQRVWQLAFT  257 (300)
T ss_pred             EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE--E-EeCCCcceEEEC
Confidence            99999875432 222111       1124568899999986554 4456 99999998887765  2 234578899999


Q ss_pred             cCCCCccceEEEE-eCCCCeEEEecccc
Q psy11524        259 QTGSLQERHVAFI-DKNRDLYLSMWSHS  285 (323)
Q Consensus       259 p~g~~~d~~l~~~-~~~~~~~~~~~~~~  285 (323)
                      |+|    ..|.+. ..++.+.+|++...
T Consensus       258 ~~g----~~l~~~~~~~~~i~v~d~~~~  281 (300)
T TIGR03866       258 PDE----KYLLTTNGVSNDVSVIDVAAL  281 (300)
T ss_pred             CCC----CEEEEEcCCCCeEEEEECCCC
Confidence            999    666665 35778888888773

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2055|consensus

Probab=99.87  E-value=8.9e-21  Score=152.65  Aligned_cols=230  Identities=13%  Similarity=0.157  Sum_probs=183.2

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc----eeEeeccCCCeEEEEECCCCC-EEEEEcCCCceEeeeEEeC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK----ATKWQAHDGLILKVAWCSSTD-LILSGGEDCKYKASFVWDT  154 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~i~v~d~  154 (323)
                      ..+.|+++.|+|.-+.+++++.+ +.+++|...++    ++.+.-...+|.+.+|.|+|. .+++++.....+   .||+
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d-~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~y---syDl  287 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLD-GTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLY---SYDL  287 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCC-CcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEE---Eeec
Confidence            46799999999999999999888 59999988766    455555678999999999998 888888888888   9999


Q ss_pred             CCCeeeEee---cC-CCceeEEEEecCCCEEEEEeC-CeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-
Q psy11524        155 DGRQLYSSL---TH-DHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-  228 (323)
Q Consensus       155 ~~~~~~~~~---~~-~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-  228 (323)
                      ....+..+.   ++ ...+.....+|++++|+..+. +.|++....+..........+.+..++|+.+|+.|++++.+| 
T Consensus       288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~Ge  367 (514)
T KOG2055|consen  288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGE  367 (514)
T ss_pred             cccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCce
Confidence            655544443   22 335778889999999999998 599999877655544444778899999999999999999999 


Q ss_pred             EEEEEcCCCceeeeecCCCC-ccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----------cCCCCccceeE
Q psy11524        229 IHIFDISSSSSSNVTAPLSH-SHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----------LDKPDTGSVYD  296 (323)
Q Consensus       229 i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~v~~  296 (323)
                      |++||++...++..+  ... .-.-++++.++++    .++++++..|.+.+|+....           +..+ ...|++
T Consensus       368 V~v~nl~~~~~~~rf--~D~G~v~gts~~~S~ng----~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL-tt~Its  440 (514)
T KOG2055|consen  368 VYVWNLRQNSCLHRF--VDDGSVHGTSLCISLNG----SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL-TTAITS  440 (514)
T ss_pred             EEEEecCCcceEEEE--eecCccceeeeeecCCC----ceEEeccCcceEEEeccchhhccCCCCchhhhhhh-heeeee
Confidence            999999999888873  332 2244677888998    89999999999999997664           1122 467999


Q ss_pred             EEEeeCCCeeEeeec--CCeEEEEEe
Q psy11524        297 LVWSSDATQIAGACA--NGSLLLGTI  320 (323)
Q Consensus       297 ~~~s~~g~~l~s~~~--dg~i~~~~l  320 (323)
                      +.|+||++.||.++.  +..+++-.+
T Consensus       441 l~Fn~d~qiLAiaS~~~knalrLVHv  466 (514)
T KOG2055|consen  441 LQFNHDAQILAIASRVKKNALRLVHV  466 (514)
T ss_pred             eeeCcchhhhhhhhhccccceEEEec
Confidence            999999999987764  455666544

>KOG1034|consensus

Probab=99.87  E-value=4.3e-20  Score=142.86  Aligned_cols=274  Identities=14%  Similarity=0.174  Sum_probs=193.1

Q ss_pred             EeecccceeEeeEeccC-Ccceeeeeec-cc-----c----ccccceeeec---CCCCCEEEEEEcCC----CCeEEEEe
Q psy11524         39 TIRRYDGTVINYPISPY-ISVLHSYAAS-HS-----W----PQALSLCRTL---NVSPPVYSAAWSPD----SNKVLLTQ  100 (323)
Q Consensus        39 ~~~~~~~~v~~~~~~~~-~~~~~~~~~~-~~-----~----~~~~~~~~~~---~~~~~v~~~~~sp~----~~~l~~~~  100 (323)
                      ..++|.-+|+.++|.+- +..-...+++ |+     +    |...++++..   +|.+....++|+-+    ..++|+++
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            35678889999998852 1111122222 21     1    2333555554   37888999999754    33566665


Q ss_pred             eCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCC-CCEEEEEcCCCceEeeeEEeCCC-CeeeEe---ecCCCceeEEE
Q psy11524        101 AKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSS-TDLILSGGEDCKYKASFVWDTDG-RQLYSS---LTHDHPISSLA  173 (323)
Q Consensus       101 ~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~i~v~d~~~-~~~~~~---~~~~~~v~~~~  173 (323)
                       ..|.|++.|....  ...+.+|...|+.+.+.|+ .++++++++|..|+   +|+++. .++..+   .+|...|.++.
T Consensus       113 -~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svR---lwnI~~~~Cv~VfGG~egHrdeVLSvD  188 (385)
T KOG1034|consen  113 -YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVR---LWNIQTDVCVAVFGGVEGHRDEVLSVD  188 (385)
T ss_pred             -ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEE---EEeccCCeEEEEecccccccCcEEEEE
Confidence             5589999998776  5678899999999999996 47999999999999   999974 444444   56889999999


Q ss_pred             EecCCCEEEEEeCC-eEEEEeCCCCeee-----------------------------ecCCCCccEEEEEEcCCCCEEEE
Q psy11524        174 WAPGGDMFAVGSYN-TLRLCDKVGWSHS-----------------------------LDKPDTGSVYDLVWSNDATQIAG  223 (323)
Q Consensus       174 ~~p~~~~l~~~~~~-~i~i~d~~~~~~~-----------------------------~~~~~~~~v~~~~~~~~~~~l~~  223 (323)
                      |+++|.+|++++.| ++++|++..+...                             ...-|...|.|+.|-  |+++++
T Consensus       189 ~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilS  266 (385)
T KOG1034|consen  189 FSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILS  266 (385)
T ss_pred             EcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheee
Confidence            99999999999998 9999998632110                             011134445555554  568888


Q ss_pred             EecCc-EEEEEcC-CCceeeee-----------cCCCCccceEE--EEEccCCCCccceEEEEeCCCCeEEEecccc---
Q psy11524        224 ACANV-IHIFDIS-SSSSSNVT-----------APLSHSHEITQ--LAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---  285 (323)
Q Consensus       224 ~~~d~-i~iwd~~-~~~~~~~~-----------~~~~~~~~v~~--~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---  285 (323)
                      -+-++ |..|... -++.+...           .+.-....++-  .+|.|-.    ..|++++..|.+++|++...   
T Consensus       267 kscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~----~~la~gnq~g~v~vwdL~~~ep~  342 (385)
T KOG1034|consen  267 KSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ----KMLALGNQSGKVYVWDLDNNEPP  342 (385)
T ss_pred             cccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH----HHHhhccCCCcEEEEECCCCCCc
Confidence            88888 9999862 12111110           01222334444  4556666    78999999999999999774   


Q ss_pred             -----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        286 -----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       286 -----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                           +.......|...+||.||..|+...+|++|.-|+-+.
T Consensus       343 ~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~  384 (385)
T KOG1034|consen  343 KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVS  384 (385)
T ss_pred             cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEeec
Confidence                 1111256799999999999999999999999998754

>KOG0303|consensus

Probab=99.87  E-value=5.9e-20  Score=145.32  Aligned_cols=196  Identities=17%  Similarity=0.319  Sum_probs=151.8

Q ss_pred             eEeeccCCCeEEEEECC-CCCEEEEEcCCCceEeeeEEeCC--------CCeeeEeecCCCceeEEEEecC-CCEEEEEe
Q psy11524        116 TKWQAHDGLILKVAWCS-STDLILSGGEDCKYKASFVWDTD--------GRQLYSSLTHDHPISSLAWAPG-GDMFAVGS  185 (323)
Q Consensus       116 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~i~v~d~~--------~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~  185 (323)
                      -.+.+|.++|..++|+| +...||+|++|.+|.   ||++-        .+.+..+.+|...|--++|+|. .+.|++++
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~---vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag  151 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVM---VWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG  151 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEE---EEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence            35678999999999999 567899999999999   99981        3567788999999999999995 55677777


Q ss_pred             CC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCcc-ceEEEEEccCCC
Q psy11524        186 YN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSH-EITQLAVNQTGS  262 (323)
Q Consensus       186 ~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~p~g~  262 (323)
                      .| +|.+||+.+........|.+.|.++.|+.||.+|++.+.|. |+|||.++++.+.+  -..|.+ .-..+.|-.+|.
T Consensus       152 ~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e--~~~heG~k~~Raifl~~g~  229 (472)
T KOG0303|consen  152 SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE--GVAHEGAKPARAIFLASGK  229 (472)
T ss_pred             CCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeee--cccccCCCcceeEEeccCc
Confidence            76 99999988654443344999999999999999999999999 99999999999987  445544 333445555553


Q ss_pred             --------CccceEEEEeCCCC---eEEEecccccCCCCccceeEEEEeeCCCeeE-eeecCCeEEEEEeec
Q psy11524        263 --------LQERHVAFIDKNRD---LYLSMWSHSLDKPDTGSVYDLVWSSDATQIA-GACANGSLLLGTIIQ  322 (323)
Q Consensus       263 --------~~d~~l~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-s~~~dg~i~~~~l~~  322 (323)
                              ..++.+++|+.+.-   +-+..+.+      ...|.=.-|.||.+.++ +|-.|+.|+.|++.+
T Consensus       230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt------SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  230 IFTTGFSRMSERQIALWDPNNLEEPIALQELDT------SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             eeeeccccccccceeccCcccccCcceeEEecc------CCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence                    34566777765432   33344444      56677777888888666 677899999999864

>KOG2919|consensus

Probab=99.87  E-value=1e-19  Score=140.51  Aligned_cols=232  Identities=16%  Similarity=0.228  Sum_probs=169.1

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--------e------eEe-eccCCCeEEEEEC-------CCCCEEE
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--------A------TKW-QAHDGLILKVAWC-------SSTDLIL  138 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--------~------~~~-~~~~~~v~~~~~~-------~~~~~l~  138 (323)
                      ......+.|||||..|++-+.++ .+.+|++...        .      ..+ ......|...+|-       |+..++|
T Consensus        49 ~nf~kgckWSPDGSciL~~sedn-~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a  127 (406)
T KOG2919|consen   49 LNFLKGCKWSPDGSCILSLSEDN-CLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA  127 (406)
T ss_pred             hhhhccceeCCCCceEEeecccC-eeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence            44567889999999999988886 8889875422        0      011 1234567777775       5678999


Q ss_pred             EEcCCCceEeeeEEeC-CCCeeeEeec--CC---CceeEEEEecCCCEEEEEeCCeEEEEeCC--CCee--ee-----cC
Q psy11524        139 SGGEDCKYKASFVWDT-DGRQLYSSLT--HD---HPISSLAWAPGGDMFAVGSYNTLRLCDKV--GWSH--SL-----DK  203 (323)
Q Consensus       139 ~~~~d~~i~~i~v~d~-~~~~~~~~~~--~~---~~v~~~~~~p~~~~l~~~~~~~i~i~d~~--~~~~--~~-----~~  203 (323)
                      +.+.+..|.   +||. +++....+..  |.   ....+++|+|||.+|++|-...|++||+.  +...  ..     ..
T Consensus       128 ~ssr~~PIh---~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~  204 (406)
T KOG2919|consen  128 VSSRDQPIH---LWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKF  204 (406)
T ss_pred             eccccCcee---eeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccc
Confidence            999999999   9998 4555555443  22   24568999999999999888899999973  3211  11     12


Q ss_pred             CCCccEEEEEEcC-CCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEe-CCCCeEEE
Q psy11524        204 PDTGSVYDLVWSN-DATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFID-KNRDLYLS  280 (323)
Q Consensus       204 ~~~~~v~~~~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~-~~~~~~~~  280 (323)
                      +..+-+.+++|+| +.+.++.++... +-||.-..+.++..  +.+|.+.|+.+.|.++|    +.+.++. .+..+..|
T Consensus       205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~l--lggh~gGvThL~~~edG----n~lfsGaRk~dkIl~W  278 (406)
T KOG2919|consen  205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQL--LGGHGGGVTHLQWCEDG----NKLFSGARKDDKILCW  278 (406)
T ss_pred             cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceee--ecccCCCeeeEEeccCc----CeecccccCCCeEEEE
Confidence            2356789999999 566899999988 88888788889888  78999999999999999    5555543 34556677


Q ss_pred             ecccc---c--CCCCcc---ceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        281 MWSHS---L--DKPDTG---SVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       281 ~~~~~---~--~~~~~~---~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      +++..   +  +..|.+   .-.-+...|+|++|++|+.||.|++|++.+
T Consensus       279 DiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  279 DIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             eehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            76653   1  111222   222456678999999999999999999854

>KOG1524|consensus

Probab=99.87  E-value=2.9e-20  Score=152.60  Aligned_cols=177  Identities=32%  Similarity=0.629  Sum_probs=142.6

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeecc---ccccccceeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCC
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASH---SWPQALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN  113 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~  113 (323)
                      ..+..|.+.+.+-.|+|||.-+.+...+|   .|.+++.+..++ +...+|+|++|.|+...++++..+...|+-...+.
T Consensus        98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~  177 (737)
T KOG1524|consen   98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANS  177 (737)
T ss_pred             hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeeccccc
Confidence            34667899999999999995444333333   355555554444 37899999999999999999988777777777777


Q ss_pred             ceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeCCeEEEEe
Q psy11524        114 KATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCD  193 (323)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d  193 (323)
                      ++..+.+|.+-|.++.|++..+.+++|++|-+.+   +||..|..+..-..|+.+|++++|+|+ +.++.++.++++   
T Consensus       178 k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfK---vWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R---  250 (737)
T KOG1524|consen  178 KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFK---IWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYNTAR---  250 (737)
T ss_pred             ceeEEeccCcEEEEeecCccccceeecCCceeEE---eecccCcccccCChhccceeeeeeccc-cceeeeeeeeee---
Confidence            7889999999999999999999999999999999   999999999888889999999999998 778888777665   


Q ss_pred             CCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc
Q psy11524        194 KVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV  228 (323)
Q Consensus       194 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  228 (323)
                             ...+..+.|..++|||||..++.|+..|
T Consensus       251 -------~~~p~~GSifnlsWS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  251 -------FSSPRVGSIFNLSWSADGTQATCGTSTG  278 (737)
T ss_pred             -------ecCCCccceEEEEEcCCCceeeccccCc
Confidence                   2233456778888888888777777666

>KOG0650|consensus

Probab=99.86  E-value=6.2e-20  Score=152.40  Aligned_cols=232  Identities=14%  Similarity=0.198  Sum_probs=183.2

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCC--EEEEEcCCCceE-------
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTD--LILSGGEDCKYK-------  147 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~-------  147 (323)
                      .|++.|.+++..|.|.+|++|+.+ |+|++|...+.  ++++ ...+.|.+++|+|.+.  .||++-.+. +.       
T Consensus       398 GHtg~Vr~iSvdp~G~wlasGsdD-GtvriWEi~TgRcvr~~-~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G  474 (733)
T KOG0650|consen  398 GHTGLVRSISVDPSGEWLASGSDD-GTVRIWEIATGRCVRTV-QFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFG  474 (733)
T ss_pred             ccCCeEEEEEecCCcceeeecCCC-CcEEEEEeecceEEEEE-eecceeEEEEecCCCCceeEEEEecCc-eEEeCcccc
Confidence            399999999999999999998776 79999998876  3333 4567899999999764  444443332 33       


Q ss_pred             -----------------------eeeEEeCC-----CCeeeEeecCCCceeEEEEecCCCEEEEEeC---C-eEEEEeCC
Q psy11524        148 -----------------------ASFVWDTD-----GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY---N-TLRLCDKV  195 (323)
Q Consensus       148 -----------------------~i~v~d~~-----~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---~-~i~i~d~~  195 (323)
                                             ++..|.-.     ..-+.....|...|..+.|+..|.||++...   . .|.|.++.
T Consensus       475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS  554 (733)
T KOG0650|consen  475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS  554 (733)
T ss_pred             chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecc
Confidence                                   11134321     0112333457788999999999999998876   2 79999987


Q ss_pred             CCeee-ecCCCCccEEEEEEcCCCCEEEEEecCcEEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCC
Q psy11524        196 GWSHS-LDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKN  274 (323)
Q Consensus       196 ~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~  274 (323)
                      ....+ .+....+.+.++.|+|...+|++++...|+|||+..++.++.  +......|..++.+|.|    ..|.+++.+
T Consensus       555 K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKk--L~tg~kwiS~msihp~G----Dnli~gs~d  628 (733)
T KOG0650|consen  555 KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKK--LLTGSKWISSMSIHPNG----DNLILGSYD  628 (733)
T ss_pred             cccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHH--HhcCCeeeeeeeecCCC----CeEEEecCC
Confidence            54333 344456789999999999999999887799999999888887  67777899999999999    788899999


Q ss_pred             CCeEEEecccc-----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        275 RDLYLSMWSHS-----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       275 ~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      +.++.+++.-.     ..+.|...+++++|++.-.++++|++||++.|+.
T Consensus       629 ~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  629 KKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             CeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            99998888664     5677899999999999999999999999999874

>KOG0270|consensus

Probab=99.86  E-value=3.7e-20  Score=148.42  Aligned_cols=232  Identities=19%  Similarity=0.275  Sum_probs=178.3

Q ss_pred             CCEEEEEEcC-------CCCeEEEEeeCCeEEEEeCCCCc-----ee------------------EeeccCCCeEEEEEC
Q psy11524         82 PPVYSAAWSP-------DSNKVLLTQAKSLVIKPLSPNNK-----AT------------------KWQAHDGLILKVAWC  131 (323)
Q Consensus        82 ~~v~~~~~sp-------~~~~l~~~~~~~~~v~~~~~~~~-----~~------------------~~~~~~~~v~~~~~~  131 (323)
                      ....|++|..       .|+++|.|.-+. .|.+||+.-.     ..                  ...+|+..|.+++|+
T Consensus       174 afPLC~ewld~~~~~~~~gNyvAiGtmdp-~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n  252 (463)
T KOG0270|consen  174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDP-EIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN  252 (463)
T ss_pred             CcchhhhhhhcCCCCCCCcceEEEeccCc-eeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc
Confidence            4446677643       367999998885 9999997521     00                  123588888899998


Q ss_pred             CC-CCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecC-CCEEEEEeCC-eEEEEeCCCC-eeeecCCCC
Q psy11524        132 SS-TDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPG-GDMFAVGSYN-TLRLCDKVGW-SHSLDKPDT  206 (323)
Q Consensus       132 ~~-~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~  206 (323)
                      .. .+.||+|+.|.+|+   +||+. +++...+..|.+.|.+++|+|. ...|++|+.| ++.+.|.+.. .....-...
T Consensus       253 ~~~~nVLaSgsaD~TV~---lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~  329 (463)
T KOG0270|consen  253 RNFRNVLASGSADKTVK---LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD  329 (463)
T ss_pred             cccceeEEecCCCceEE---EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec
Confidence            75 46899999999999   99995 7888888889999999999995 6778999987 9999998842 111222245


Q ss_pred             ccEEEEEEcCCCC-EEEEEecCc-EEEEEcCCC-ceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecc
Q psy11524        207 GSVYDLVWSNDAT-QIAGACANV-IHIFDISSS-SSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWS  283 (323)
Q Consensus       207 ~~v~~~~~~~~~~-~l~~~~~d~-i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~  283 (323)
                      +.|..++|.|... .+++++.|| ++-+|+|+. +++.+  +..|..+|.++.+++..+   +.+.+.+.++.+.+|++.
T Consensus       330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt--~~AHd~~ISgl~~n~~~p---~~l~t~s~d~~Vklw~~~  404 (463)
T KOG0270|consen  330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT--LKAHDDEISGLSVNIQTP---GLLSTASTDKVVKLWKFD  404 (463)
T ss_pred             cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE--EEeccCCcceEEecCCCC---cceeeccccceEEEEeec
Confidence            7799999999554 667778889 999999975 78888  789999999999998774   788888888888899887


Q ss_pred             cc---cCCCC---ccceeEEEEeeCCC-eeEeeecCCeEEEEEeec
Q psy11524        284 HS---LDKPD---TGSVYDLVWSSDAT-QIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       284 ~~---~~~~~---~~~v~~~~~s~~g~-~l~s~~~dg~i~~~~l~~  322 (323)
                      ..   ....|   -+...|+++.|+-. +|+.|+..+.+++|++.+
T Consensus       405 ~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~  450 (463)
T KOG0270|consen  405 VDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT  450 (463)
T ss_pred             CCCCcccccccccccceeecccCCCcceEEEecCccceEEEeeccc
Confidence            63   11112   23466777777754 788999999999999853

>KOG1009|consensus

Probab=99.86  E-value=5.7e-20  Score=145.84  Aligned_cols=153  Identities=20%  Similarity=0.308  Sum_probs=126.7

Q ss_pred             CCCCEEEEEEcCCCC-eEEEEeeCCeEEEEeCCCCc-----------eeEeeccCCCeEEEEECCCCCEEEEEcCCCceE
Q psy11524         80 VSPPVYSAAWSPDSN-KVLLTQAKSLVIKPLSPNNK-----------ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYK  147 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~-~l~~~~~~~~~v~~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  147 (323)
                      ...++..+.|.++.. .+++|+.|. .|++|.....           ...+..|...|+.+.|+|+|+.||+|+.+|.+.
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~-~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~   90 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDK-DIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF   90 (434)
T ss_pred             CCCceEEEEeccCcccceecccCcc-ceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence            467899999998777 899998885 8999965321           345678999999999999999999999999999


Q ss_pred             eeeEEeCC--------C-----C----eeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCC-CCeeeecCCCCcc
Q psy11524        148 ASFVWDTD--------G-----R----QLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKV-GWSHSLDKPDTGS  208 (323)
Q Consensus       148 ~i~v~d~~--------~-----~----~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~-~~~~~~~~~~~~~  208 (323)
                         +|-..        +     +    ....+.+|...+..++|+|++.++++++.+ .+++||+. +........|...
T Consensus        91 ---lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y  167 (434)
T KOG1009|consen   91 ---LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY  167 (434)
T ss_pred             ---EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccc
Confidence               99764        2     1    123456788999999999999999999996 99999987 5566778889999


Q ss_pred             EEEEEEcCCCCEEEEEecCc-EEEEEcCC
Q psy11524        209 VYDLVWSNDATQIAGACANV-IHIFDISS  236 (323)
Q Consensus       209 v~~~~~~~~~~~l~~~~~d~-i~iwd~~~  236 (323)
                      +..++|.|-++++++-+.|. .+.+.+..
T Consensus       168 vqgvawDpl~qyv~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  168 VQGVAWDPLNQYVASKSSDRHPEGFSAKL  196 (434)
T ss_pred             cceeecchhhhhhhhhccCcccceeeeee
Confidence            99999999999999888887 66666443

>KOG0321|consensus

Probab=99.86  E-value=1.3e-19  Score=151.49  Aligned_cols=234  Identities=14%  Similarity=0.194  Sum_probs=172.6

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc----eeEeeccCCCeEEEEECCC-CCEEEEEcCCCceEeeeEEe
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK----ATKWQAHDGLILKVAWCSS-TDLILSGGEDCKYKASFVWD  153 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~i~v~d  153 (323)
                      -|.+.|..+.|.|....|+++++|. .++.||..+.    ...+.+|.+.|.+++|.|+ ...|++|+.||.|.   |||
T Consensus        98 aH~nAifDl~wapge~~lVsasGDs-T~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~il---lWD  173 (720)
T KOG0321|consen   98 AHKNAIFDLKWAPGESLLVSASGDS-TIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEIL---LWD  173 (720)
T ss_pred             cccceeEeeccCCCceeEEEccCCc-eeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEE---EEE
Confidence            4999999999999666777777775 9999999876    3347899999999999995 46899999999999   999


Q ss_pred             CCCCee----------------------------eEeecCCCceeE---EEEecCCCEEEEEeC-C-eEEEEeCCCCee-
Q psy11524        154 TDGRQL----------------------------YSSLTHDHPISS---LAWAPGGDMFAVGSY-N-TLRLCDKVGWSH-  199 (323)
Q Consensus       154 ~~~~~~----------------------------~~~~~~~~~v~~---~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~-  199 (323)
                      ++-...                            .....+...|.+   +.+..|...||+++. | .|++||++.... 
T Consensus       174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~  253 (720)
T KOG0321|consen  174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA  253 (720)
T ss_pred             EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence            841110                            011122333444   455568889999998 7 999999975321 


Q ss_pred             ------ee--cCCC---CccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCc--eeeeecCCCCcc--ceEEEEEccCCCC
Q psy11524        200 ------SL--DKPD---TGSVYDLVWSNDATQIAGACANV-IHIFDISSSS--SSNVTAPLSHSH--EITQLAVNQTGSL  263 (323)
Q Consensus       200 ------~~--~~~~---~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~--~~~~~~~~~~~~--~v~~~~~~p~g~~  263 (323)
                            ..  ...+   .-.+.++.....|.+|++.+.|+ |++|++.+-.  ++..  +.++..  .-..-..+|++  
T Consensus       254 ~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~--~sg~~~~sf~vks~lSpd~--  329 (720)
T KOG0321|consen  254 YRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAE--FSGKLNSSFYVKSELSPDD--  329 (720)
T ss_pred             cccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhh--ccCcccceeeeeeecCCCC--
Confidence                  11  1112   23477888888889999988899 9999988643  2332  233221  11122458887  


Q ss_pred             ccceEEEEeCCCCeEEEecccc-----cCCCCccceeEEEEeeCC-CeeEeeecCCeEEEEEeec
Q psy11524        264 QERHVAFIDKNRDLYLSMWSHS-----LDKPDTGSVYDLVWSSDA-TQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       264 ~d~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g-~~l~s~~~dg~i~~~~l~~  322 (323)
                        .++..+..+...++|.+...     +..+|.-.|++++|.|.- .-++++++|-++++|+|.+
T Consensus       330 --~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~  392 (720)
T KOG0321|consen  330 --CSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN  392 (720)
T ss_pred             --ceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence              89999999999999999876     667889999999999853 2467779999999999853

>KOG0302|consensus

Probab=99.86  E-value=3.7e-20  Score=145.64  Aligned_cols=196  Identities=20%  Similarity=0.239  Sum_probs=154.9

Q ss_pred             eccCCCeEEEEECCC--CCEEEEEcCCCceEeeeEEeCC-----------------CCeeeEeecCCCceeEEEEecCCC
Q psy11524        119 QAHDGLILKVAWCSS--TDLILSGGEDCKYKASFVWDTD-----------------GRQLYSSLTHDHPISSLAWAPGGD  179 (323)
Q Consensus       119 ~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~i~v~d~~-----------------~~~~~~~~~~~~~v~~~~~~p~~~  179 (323)
                      ..|.+.++.+.-++-  ..+.++-+..|.|.   ||++.                 .+++.++.+|+..=+.++|||-..
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~---Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~  224 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQ---VWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT  224 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEE---EEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence            456777777766664  45667778889999   99982                 245677788888889999999321


Q ss_pred             -EEEEEeC-CeEEEEeCCCCe----eeecCCCCccEEEEEEcCCC-CEEEEEecCc-EEEEEcCCCceeeeecCCCCccc
Q psy11524        180 -MFAVGSY-NTLRLCDKVGWS----HSLDKPDTGSVYDLVWSNDA-TQIAGACANV-IHIFDISSSSSSNVTAPLSHSHE  251 (323)
Q Consensus       180 -~l~~~~~-~~i~i~d~~~~~----~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~  251 (323)
                       .+++|.. ..|++|...+..    ...+.+|...|..++|||.. ..+++|+-|+ |+|||++.+.....+....|.+.
T Consensus       225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD  304 (440)
T KOG0302|consen  225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD  304 (440)
T ss_pred             cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence             3666655 589999966432    22455699999999999954 4789999999 99999999843333224789999


Q ss_pred             eEEEEEccCCCCccceEEEEeCCCCeEEEecccc-------cCCCCccceeEEEEeeCC-CeeEeeecCCeEEEEEee
Q psy11524        252 ITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-------LDKPDTGSVYDLVWSSDA-TQIAGACANGSLLLGTII  321 (323)
Q Consensus       252 v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~~g-~~l~s~~~dg~i~~~~l~  321 (323)
                      |+.+.|+...    ..|+.++.+|...+|+++..       .++.|..+|+++.|+|.. ..|++++.|..|.+|+|.
T Consensus       305 VNVISWnr~~----~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  305 VNVISWNRRE----PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             eeeEEccCCc----ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            9999999987    68999999999999999875       566789999999999964 578899999999999983

>KOG1445|consensus

Probab=99.86  E-value=2.6e-20  Score=155.83  Aligned_cols=108  Identities=21%  Similarity=0.368  Sum_probs=90.6

Q ss_pred             cEEEEEEcC-CCCEEEEEecCc-EEEEEcCCCc-------eeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeE
Q psy11524        208 SVYDLVWSN-DATQIAGACANV-IHIFDISSSS-------SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLY  278 (323)
Q Consensus       208 ~v~~~~~~~-~~~~l~~~~~d~-i~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~  278 (323)
                      .|+.+.|+| |...|+++++|+ |++|.+..+.       +...  +..|...|+++.|+|-..   ..+++.+.+..+.
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~--lt~h~eKI~slRfHPLAa---dvLa~asyd~Ti~  703 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKI--LTIHGEKITSLRFHPLAA---DVLAVASYDSTIE  703 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCccee--eecccceEEEEEecchhh---hHhhhhhccceee
Confidence            477889999 778999999999 9999986542       2233  567889999999999653   6777778888888


Q ss_pred             EEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        279 LSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       279 ~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      +|++...    .+.+|.+.|.+++|||||+.+|+.+.||+|++|+-
T Consensus       704 lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~P  749 (1012)
T KOG1445|consen  704 LWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEP  749 (1012)
T ss_pred             eeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCC
Confidence            8888775    56678999999999999999999999999999974

>KOG1538|consensus

Probab=99.86  E-value=4.6e-20  Score=155.24  Aligned_cols=233  Identities=12%  Similarity=0.134  Sum_probs=187.0

Q ss_pred             eeeeEeecccceeEeeEeccCCcceeeeeecccccccccee-------eecCCCCCEEEEEEcCCCCeEEEEeeCCeEEE
Q psy11524         35 KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLC-------RTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIK  107 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~  107 (323)
                      ...+++++|++.|++++++.||+    .+++|+-|+..-+|       -...|.+.|.||.|+|-...|++++-.+  .-
T Consensus        44 ~llqtLKgHKDtVycVAys~dGk----rFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsd--Fg  117 (1081)
T KOG1538|consen   44 TLLQPLKGHKDTVYCVAYAKDGK----RFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSD--FG  117 (1081)
T ss_pred             ccccccccccceEEEEEEccCCc----eeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhh--cc
Confidence            44578999999999999999995    55555544444433       2345999999999999999999987653  56


Q ss_pred             EeCCCCceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeec---CCCceeEEEEecC-----CC
Q psy11524        108 PLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLT---HDHPISSLAWAPG-----GD  179 (323)
Q Consensus       108 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~---~~~~v~~~~~~p~-----~~  179 (323)
                      +|...++...-.....++.+++|..||++++.|-.+|+|.   +-+-.+++...+..   ...+|.+++|+|.     ..
T Consensus       118 lWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIs---iRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~d  194 (1081)
T KOG1538|consen  118 LWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTIS---IRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRND  194 (1081)
T ss_pred             ccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEE---eecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccc
Confidence            7877766333333557889999999999999999999999   99887776666654   6678999999995     24


Q ss_pred             EEEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEE
Q psy11524        180 MFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAV  257 (323)
Q Consensus       180 ~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  257 (323)
                      .+++...+ ++.++.+.+..+.......-...|+.+.|+|.+++.|+.|+ +.+|. +.|-.+.+  +.....+|+.++.
T Consensus       195 i~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGT--vg~~D~WIWtV~~  271 (1081)
T KOG1538|consen  195 ILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGT--VGEQDSWIWTVQA  271 (1081)
T ss_pred             eEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEee--ccccceeEEEEEE
Confidence            57788877 99999998876665555566788999999999999999999 99998 66777777  5667889999999


Q ss_pred             ccCCCCccceEEEEeCCCCeEEEecc
Q psy11524        258 NQTGSLQERHVAFIDKNRDLYLSMWS  283 (323)
Q Consensus       258 ~p~g~~~d~~l~~~~~~~~~~~~~~~  283 (323)
                      .|++    +++.++..||.+-.+++.
T Consensus       272 ~PNs----Q~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  272 KPNS----QYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             ccCC----ceEEEEEccCeeehhhhH
Confidence            9999    899999999988766654

>KOG0307|consensus

Probab=99.85  E-value=2.7e-20  Score=165.10  Aligned_cols=242  Identities=17%  Similarity=0.224  Sum_probs=180.5

Q ss_pred             ceeeecCCCCCEEEEEEcCCCCe---EEEEeeCCeEEEEeCCCCc--------eeEeeccCCCeEEEEECCCC-CEEEEE
Q psy11524         73 SLCRTLNVSPPVYSAAWSPDSNK---VLLTQAKSLVIKPLSPNNK--------ATKWQAHDGLILKVAWCSST-DLILSG  140 (323)
Q Consensus        73 ~~~~~~~~~~~v~~~~~sp~~~~---l~~~~~~~~~v~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~-~~l~~~  140 (323)
                      +....+......+.++|.+.|..   |++|+.++|.|.+|+....        +.+...|.+.|..+.|++.. ++||+|
T Consensus        56 k~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG  135 (1049)
T KOG0307|consen   56 KPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASG  135 (1049)
T ss_pred             cccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeecc
Confidence            34445556788999999998887   4666677789999997652        45678899999999999965 599999


Q ss_pred             cCCCceEeeeEEeCCC-CeeeEe--ecCCCceeEEEEecC-CCEEEEEeCC-eEEEEeCCCC-eeeecCCCC--ccEEEE
Q psy11524        141 GEDCKYKASFVWDTDG-RQLYSS--LTHDHPISSLAWAPG-GDMFAVGSYN-TLRLCDKVGW-SHSLDKPDT--GSVYDL  212 (323)
Q Consensus       141 ~~d~~i~~i~v~d~~~-~~~~~~--~~~~~~v~~~~~~p~-~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~--~~v~~~  212 (323)
                      +.||.|.   |||+.. +.....  ......|.+++|+.. .+.|++++.+ ++.|||++.+ .+..+..+.  ..+..+
T Consensus       136 a~~geI~---iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l  212 (1049)
T KOG0307|consen  136 ADDGEIL---IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVL  212 (1049)
T ss_pred             CCCCcEE---EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeee
Confidence            9999999   999953 222222  224567999999985 5567787775 9999999865 333333333  347899


Q ss_pred             EEcCCCC-EEEEEecCc----EEEEEcCCC-ceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-
Q psy11524        213 VWSNDAT-QIAGACANV----IHIFDISSS-SSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-  285 (323)
Q Consensus       213 ~~~~~~~-~l~~~~~d~----i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-  285 (323)
                      +|+|+.. .|+++++|.    |.+||++.- .++++  +.+|...|.++.|++.+.   .++.....|+.+..|+.+++ 
T Consensus       213 ~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~--~~~H~~GilslsWc~~D~---~lllSsgkD~~ii~wN~~tgE  287 (1049)
T KOG0307|consen  213 AWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI--LEGHQRGILSLSWCPQDP---RLLLSSGKDNRIICWNPNTGE  287 (1049)
T ss_pred             eeCCCCceeeeeecCCCCCceeEeecccccCCchhh--hcccccceeeeccCCCCc---hhhhcccCCCCeeEecCCCce
Confidence            9999753 566665543    999998864 45666  689999999999999863   55555666666666666653 


Q ss_pred             ---cCCCCccceeEEEEeeCCC-eeEeeecCCeEEEEEeec
Q psy11524        286 ---LDKPDTGSVYDLVWSSDAT-QIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       286 ---~~~~~~~~v~~~~~s~~g~-~l~s~~~dg~i~~~~l~~  322 (323)
                         .....+..+..+.|.|... .++.++-||.|-||.+..
T Consensus       288 vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~  328 (1049)
T KOG0307|consen  288 VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG  328 (1049)
T ss_pred             EeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence               1111368899999999876 888999999999999864

>KOG1273|consensus

Probab=99.85  E-value=3.4e-19  Score=137.25  Aligned_cols=267  Identities=15%  Similarity=0.149  Sum_probs=182.8

Q ss_pred             eEeeEeccCCcceeeeeecc---ccc-cccceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeec
Q psy11524         47 VINYPISPYISVLHSYAASH---SWP-QALSLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQA  120 (323)
Q Consensus        47 v~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~  120 (323)
                      -.++.|++.|..++..++.|   .|| .+.++-+.+. |..+|++++||+||+.|++++.|. .+.+||+..+ ......
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~-si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDW-SIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCc-eeEEEeccCCCceeEEE
Confidence            67899999998777777777   476 4444555554 999999999999999999998885 9999998776 333345


Q ss_pred             cCCCeEEEEECCCC-CEEEEEcCCCceEeeeEEeCCCCeeeEeecC-----CCceeEEEEecCCCEEEEEeC-CeEEEEe
Q psy11524        121 HDGLILKVAWCSST-DLILSGGEDCKYKASFVWDTDGRQLYSSLTH-----DHPISSLAWAPGGDMFAVGSY-NTLRLCD  193 (323)
Q Consensus       121 ~~~~v~~~~~~~~~-~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~-----~~~v~~~~~~p~~~~l~~~~~-~~i~i~d  193 (323)
                      ...+|+.+.|+|.. +..++.-.+..-.   +.++.......+...     .....+..|.+.|+++++|.. |.+.++|
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~---vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~  181 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPV---VIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD  181 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcE---EEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence            78899999999954 3333333333344   555543222222111     112233468899999999998 6999999


Q ss_pred             CCCCe-eeecCCCC-ccEEEEEEcCCCCEEEEEecCc-EEEEEcCC-------CceeeeecCC--CCccceEEEEEccCC
Q psy11524        194 KVGWS-HSLDKPDT-GSVYDLVWSNDATQIAGACANV-IHIFDISS-------SSSSNVTAPL--SHSHEITQLAVNQTG  261 (323)
Q Consensus       194 ~~~~~-~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~-------~~~~~~~~~~--~~~~~v~~~~~~p~g  261 (323)
                      ..+.+ +..+.-.. ..|..+.++..|+.|+.-+.|. |+.|+++.       +++....+++  -....-.+++|+.+|
T Consensus       182 a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg  261 (405)
T KOG1273|consen  182 AETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG  261 (405)
T ss_pred             cchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence            87653 33333233 5789999999999999999999 99998762       1111110011  122344577888888


Q ss_pred             CCccceEEEEeCC-CCeEEEecccc----cCCCC-ccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        262 SLQERHVAFIDKN-RDLYLSMWSHS----LDKPD-TGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       262 ~~~d~~l~~~~~~-~~~~~~~~~~~----~~~~~-~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                          .++..++.. -.+++|.-..+    ++.+. +.....+.|+|-...+++- ..|.+++|....
T Consensus       262 ----eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  262 ----EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             ----cEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence                566555432 34678876655    22222 3668899999999888887 789999998753

>KOG1408|consensus

Probab=99.85  E-value=1.3e-19  Score=153.60  Aligned_cols=229  Identities=12%  Similarity=0.121  Sum_probs=181.0

Q ss_pred             ecccceeEeeEeccCCcceeeeeecccccccccee--------eec-CCCCCEEEEEEcC---CCCeEEEEeeCCeEEEE
Q psy11524         41 RRYDGTVINYPISPYISVLHSYAASHSWPQALSLC--------RTL-NVSPPVYSAAWSP---DSNKVLLTQAKSLVIKP  108 (323)
Q Consensus        41 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~v~~~~~sp---~~~~l~~~~~~~~~v~~  108 (323)
                      -+....+.+++++|+|+    ++++|.--+++++.        ..+ .|+..|.|+.||.   ..+.||+++.+. .|.+
T Consensus       456 ~d~r~G~R~~~vSp~gq----hLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdR-lIHV  530 (1080)
T KOG1408|consen  456 CDSRFGFRALAVSPDGQ----HLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDR-LIHV  530 (1080)
T ss_pred             cCcccceEEEEECCCcc----eecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCc-eEEE
Confidence            34556789999999995    55555332333322        222 3999999999986   356788887775 9999


Q ss_pred             eCCCCc---eeEeeccCCCeEEEEECCCC--CEEEEEcCCCceEeeeEEeCCC--CeeeEe-----ecCCCceeEEEEec
Q psy11524        109 LSPNNK---ATKWQAHDGLILKVAWCSST--DLILSGGEDCKYKASFVWDTDG--RQLYSS-----LTHDHPISSLAWAP  176 (323)
Q Consensus       109 ~~~~~~---~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~~i~v~d~~~--~~~~~~-----~~~~~~v~~~~~~p  176 (323)
                      +|....   +.++.+|...|+++.|...|  ..+++++.|+.|.    ++...  .....+     ...+..++.++..|
T Consensus       531 ~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim----Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp  606 (1080)
T KOG1408|consen  531 YDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM----FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP  606 (1080)
T ss_pred             EecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh----eehhccccCceeccccccccccceEEEeeeCC
Confidence            998876   67889999999999998877  6899999999885    55421  111111     12345689999999


Q ss_pred             CCCEEEEEeCC-eEEEEeCCC-CeeeecC---CCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCcc
Q psy11524        177 GGDMFAVGSYN-TLRLCDKVG-WSHSLDK---PDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSH  250 (323)
Q Consensus       177 ~~~~l~~~~~~-~i~i~d~~~-~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~  250 (323)
                      ..+++++++.| .|+|||+.. +..+.++   .|.+....+...|.|.||++.+.|. +.++|..+|+++.+  ..+|..
T Consensus       607 ~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~--m~GHsE  684 (1080)
T KOG1408|consen  607 TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ--MTGHSE  684 (1080)
T ss_pred             CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh--hcCcch
Confidence            99999999998 999999874 4444444   3667788999999999999999999 99999999999999  899999


Q ss_pred             ceEEEEEccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        251 EITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       251 ~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      .|+.+.|.+|.    +.|.....||.+.+|.+..
T Consensus       685 ~VTG~kF~nDC----kHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  685 AVTGVKFLNDC----KHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             heeeeeecccc----hhheeecCCceEEEEECch
Confidence            99999999999    7888888888888888765

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.85  E-value=4.4e-19  Score=152.95  Aligned_cols=212  Identities=16%  Similarity=0.155  Sum_probs=150.7

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCC--eEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEc-CCCceEeeeEEeC
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKS--LVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGG-EDCKYKASFVWDT  154 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~--~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~i~v~d~  154 (323)
                      .+...+.+++|||||++|++++.++  ..|++|+..+. ...+....+....++|+|||+.|+.++ .+|.+. ||+||+
T Consensus       201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~-Iy~~d~  279 (429)
T PRK01742        201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLN-IYVMGA  279 (429)
T ss_pred             cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEE-EEEEEC
Confidence            4677899999999999999987543  47999998765 333433344455789999999888765 577664 446677


Q ss_pred             CCCeeeEeecCCCceeEEEEecCCCEEEEEeC--CeEEEEeC--CCCeeeecCCCCccEEEEEEcCCCCEEEEEecCcEE
Q psy11524        155 DGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY--NTLRLCDK--VGWSHSLDKPDTGSVYDLVWSNDATQIAGACANVIH  230 (323)
Q Consensus       155 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--~~i~i~d~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~i~  230 (323)
                      .+.....+..+...+...+|+|||+.|+..+.  +...+|++  .+...... .+..  ..+.|+|+|++|+..+.+++.
T Consensus       280 ~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~i~  356 (429)
T PRK01742        280 NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDNVV  356 (429)
T ss_pred             CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCCEE
Confidence            76777777777777889999999998887765  35666654  44333333 2333  457899999999988876666


Q ss_pred             EEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccc---c---cCCCCccceeEEEEeeC
Q psy11524        231 IFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH---S---LDKPDTGSVYDLVWSSD  302 (323)
Q Consensus       231 iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~---~---~~~~~~~~v~~~~~s~~  302 (323)
                      +||+.+++....  ...  .....+.|+|+|    +.|+..+.++...+|.+..   .   ....|.+.+..++|||-
T Consensus       357 ~~Dl~~g~~~~l--t~~--~~~~~~~~sPdG----~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        357 KQDLTSGSTEVL--SST--FLDESPSISPNG----IMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EEECCCCCeEEe--cCC--CCCCCceECCCC----CEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            699998875532  122  134568899999    7888887777777665432   1   23445677888999885

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.85  E-value=5.9e-19  Score=152.18  Aligned_cols=205  Identities=12%  Similarity=0.098  Sum_probs=143.5

Q ss_pred             eEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCC---ceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCC
Q psy11524        104 LVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDC---KYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGD  179 (323)
Q Consensus       104 ~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~  179 (323)
                      ..|++||..+. .+.+..+...+..++|+|||+.|+.++.++   .|.   +||+.+.....+....+....++|+|||+
T Consensus       184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~---i~dl~tg~~~~l~~~~g~~~~~~wSPDG~  260 (429)
T PRK01742        184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLV---VHDLRSGARKVVASFRGHNGAPAFSPDGS  260 (429)
T ss_pred             EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEE---EEeCCCCceEEEecCCCccCceeECCCCC
Confidence            58999998765 566778888899999999999999887543   466   99997554444444444456789999999


Q ss_pred             EEEEEeC--C--eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEec-Cc-EEEEEcCCC-ceeeeecCCCCccce
Q psy11524        180 MFAVGSY--N--TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACA-NV-IHIFDISSS-SSSNVTAPLSHSHEI  252 (323)
Q Consensus       180 ~l~~~~~--~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~-i~iwd~~~~-~~~~~~~~~~~~~~v  252 (323)
                      .|+++..  +  .|++||+.+.....+..+...+..+.|+|||+.|+..+. ++ ..||++... .....  + .+..  
T Consensus       261 ~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~--l-~~~~--  335 (429)
T PRK01742        261 RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL--V-GGRG--  335 (429)
T ss_pred             EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE--e-cCCC--
Confidence            9888753  3  466667776655555556677889999999998876664 56 777776432 22222  2 2322  


Q ss_pred             EEEEEccCCCCccceEEEEeCCCCeEEEeccccc---CCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        253 TQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSL---DKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       253 ~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      ..+.|+|+|    +.|++...+ .+..|++..+.   ... .....+++|+|||++|+.++.++.+.+|.+.+
T Consensus       336 ~~~~~SpDG----~~ia~~~~~-~i~~~Dl~~g~~~~lt~-~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~  402 (429)
T PRK01742        336 YSAQISADG----KTLVMINGD-NVVKQDLTSGSTEVLSS-TFLDESPSISPNGIMIIYSSTQGLGKVLQLVS  402 (429)
T ss_pred             CCccCCCCC----CEEEEEcCC-CEEEEECCCCCeEEecC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence            457899999    666665543 45556665431   111 11335688999999999999999999888753

>KOG0307|consensus

Probab=99.85  E-value=2.4e-20  Score=165.40  Aligned_cols=232  Identities=15%  Similarity=0.151  Sum_probs=176.3

Q ss_pred             ceeEeeEeccCCcceeeeeecccccccccee--------------eec-CCCCCEEEEEEcCCCC-eEEEEeeCCeEEEE
Q psy11524         45 GTVINYPISPYISVLHSYAASHSWPQALSLC--------------RTL-NVSPPVYSAAWSPDSN-KVLLTQAKSLVIKP  108 (323)
Q Consensus        45 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~v~~~~~sp~~~-~l~~~~~~~~~v~~  108 (323)
                      ..-+.+.|.+.|....-.++.|..|+.+.++              ... .|++.|..+.|++.+. .||+| .++|.|++
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG-a~~geI~i  143 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASG-ADDGEILI  143 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeecc-CCCCcEEE
Confidence            3456788888876533335555444444333              222 3999999999999877 55555 55589999


Q ss_pred             eCCCCceeEe----eccCCCeEEEEECCC-CCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCC--ceeEEEEecCCC-
Q psy11524        109 LSPNNKATKW----QAHDGLILKVAWCSS-TDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDH--PISSLAWAPGGD-  179 (323)
Q Consensus       109 ~~~~~~~~~~----~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~--~v~~~~~~p~~~-  179 (323)
                      ||+.+....+    ....+.|.+++|+.. ...|++++.+|++.   |||++ .+.+..+..+..  .+..++|+|++. 
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~---iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT  220 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAV---IWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT  220 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCce---eccccCCCcccccccCCCccceeeeeeCCCCce
Confidence            9998752222    224678999999874 56789999999999   99997 455555554433  578999999754 


Q ss_pred             EEEEEeC-C---eEEEEeCC--CCeeeecCCCCccEEEEEEcCCC-CEEEEEecCc-EEEEEcCCCceeeeecCCCCccc
Q psy11524        180 MFAVGSY-N---TLRLCDKV--GWSHSLDKPDTGSVYDLVWSNDA-TQIAGACANV-IHIFDISSSSSSNVTAPLSHSHE  251 (323)
Q Consensus       180 ~l~~~~~-~---~i~i~d~~--~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~  251 (323)
                      .++++++ |   .|.+||+|  +...+.+..|...|.++.|++.. .+|++++.|+ |.+|+.++++.+.+  +.....+
T Consensus       221 ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~--~p~~~nW  298 (1049)
T KOG0307|consen  221 QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE--LPAQGNW  298 (1049)
T ss_pred             eeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeee--cCCCCcc
Confidence            4666665 3   79999988  34666778899999999999954 8999999999 99999999999998  6777889


Q ss_pred             eEEEEEccCCCCccceEEEEeCCCCeEEEecccc
Q psy11524        252 ITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS  285 (323)
Q Consensus       252 v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~  285 (323)
                      +..+.|+|...   ..+++.+.+|.+.|+.+...
T Consensus       299 ~fdv~w~pr~P---~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  299 CFDVQWCPRNP---SVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             eeeeeecCCCc---chhhhheeccceeeeeeecC
Confidence            99999999874   67888888888888887764

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.84  E-value=2.1e-17  Score=138.32  Aligned_cols=242  Identities=11%  Similarity=0.075  Sum_probs=161.1

Q ss_pred             cceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEe--eccCCCeEEEEECCCCCEEEEEcC-CCce
Q psy11524         72 LSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKW--QAHDGLILKVAWCSSTDLILSGGE-DCKY  146 (323)
Q Consensus        72 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~--~~~~~~v~~~~~~~~~~~l~~~~~-d~~i  146 (323)
                      .++.+.+.+.+....++++|++++|++++...+.|..|+....  +...  ....+....++|+|+++++++++. ++.|
T Consensus        25 l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v  104 (330)
T PRK11028         25 LTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCV  104 (330)
T ss_pred             eeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeE
Confidence            3444556666778889999999999888766667888876522  2211  123345678999999998888764 7889


Q ss_pred             EeeeEEeCC--CC---eeeEeecCCCceeEEEEecCCCEEEEEeC-C-eEEEEeCCC-Ceee------ecCCCCccEEEE
Q psy11524        147 KASFVWDTD--GR---QLYSSLTHDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVG-WSHS------LDKPDTGSVYDL  212 (323)
Q Consensus       147 ~~i~v~d~~--~~---~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~-~~~~------~~~~~~~~v~~~  212 (323)
                      .   +|+++  +.   ....+ .......+++++|+++++++++. + .|.+||+.. ..+.      ...........+
T Consensus       105 ~---v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~  180 (330)
T PRK11028        105 S---VSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHM  180 (330)
T ss_pred             E---EEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceE
Confidence            9   99985  21   12222 22345678899999999887776 3 999999864 2221      011123457789


Q ss_pred             EEcCCCCEEEEEec-Cc-EEEEEcCC--Cc--eeeeecCC-C---CccceEEEEEccCCCCccceEEEEeC-CCCeEEEe
Q psy11524        213 VWSNDATQIAGACA-NV-IHIFDISS--SS--SSNVTAPL-S---HSHEITQLAVNQTGSLQERHVAFIDK-NRDLYLSM  281 (323)
Q Consensus       213 ~~~~~~~~l~~~~~-d~-i~iwd~~~--~~--~~~~~~~~-~---~~~~v~~~~~~p~g~~~d~~l~~~~~-~~~~~~~~  281 (323)
                      +|+|+|++++++.. ++ |.+||+..  ++  .+..+... .   +......+.++|++    +.+.+.+. ++.+.+|+
T Consensus       181 ~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg----~~lyv~~~~~~~I~v~~  256 (330)
T PRK11028        181 VFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG----RHLYACDRTASLISVFS  256 (330)
T ss_pred             EECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC----CEEEEecCCCCeEEEEE
Confidence            99999999988877 56 99999873  33  22221111 1   11223468899998    67777654 45677776


Q ss_pred             cccc----cCCCC---ccceeEEEEeeCCCeeEeeec-CCeEEEEEee
Q psy11524        282 WSHS----LDKPD---TGSVYDLVWSSDATQIAGACA-NGSLLLGTII  321 (323)
Q Consensus       282 ~~~~----~~~~~---~~~v~~~~~s~~g~~l~s~~~-dg~i~~~~l~  321 (323)
                      +...    ....+   ......++++|||++|+++.. +++|.+|++.
T Consensus       257 i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        257 VSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            6431    00001   124568999999999997775 8999999873

>KOG2919|consensus

Probab=99.84  E-value=4.7e-19  Score=136.95  Aligned_cols=222  Identities=18%  Similarity=0.270  Sum_probs=163.0

Q ss_pred             CCCCEEEEEEc-------CCCCeEEEEeeCCeEEEEeCCCCce--eEe--eccCC---CeEEEEECCCCCEEEEEcCCCc
Q psy11524         80 VSPPVYSAAWS-------PDSNKVLLTQAKSLVIKPLSPNNKA--TKW--QAHDG---LILKVAWCSSTDLILSGGEDCK  145 (323)
Q Consensus        80 ~~~~v~~~~~s-------p~~~~l~~~~~~~~~v~~~~~~~~~--~~~--~~~~~---~v~~~~~~~~~~~l~~~~~d~~  145 (323)
                      ....|+..+|-       |+..++++.+.++ -|++||..+..  ..+  ..|..   ...+++|+|||.+|++|. ...
T Consensus       103 eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~-PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krc  180 (406)
T KOG2919|consen  103 EGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ-PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRC  180 (406)
T ss_pred             cCCEEEEEEeeeccccCCCccceeeeccccC-ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cce
Confidence            45667787775       6667777776664 89999987651  122  22332   346899999999998765 667


Q ss_pred             eEeeeEEeC-C-CCee--eE-----eecCCCceeEEEEec-CCCEEEEEeCC-eEEEEeCC-CCeeeecCCCCccEEEEE
Q psy11524        146 YKASFVWDT-D-GRQL--YS-----SLTHDHPISSLAWAP-GGDMFAVGSYN-TLRLCDKV-GWSHSLDKPDTGSVYDLV  213 (323)
Q Consensus       146 i~~i~v~d~-~-~~~~--~~-----~~~~~~~v~~~~~~p-~~~~l~~~~~~-~i~i~d~~-~~~~~~~~~~~~~v~~~~  213 (323)
                      |+   ++|+ + +...  ..     ..+..+-+.+++|+| +...++.++.+ .+-||.-. ..++.++.+|.+.|+.+.
T Consensus       181 ir---vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~  257 (406)
T KOG2919|consen  181 IR---VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQ  257 (406)
T ss_pred             EE---EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEE
Confidence            99   9998 3 2222  11     123466789999999 56689999986 77777754 346677778999999999


Q ss_pred             EcCCCCEEEEEecCc--EEEEEcCCC-ceeeeecCCCCcc-ceEEE--EEccCCCCccceEEEEeCCCCeEEEecccc--
Q psy11524        214 WSNDATQIAGACANV--IHIFDISSS-SSSNVTAPLSHSH-EITQL--AVNQTGSLQERHVAFIDKNRDLYLSMWSHS--  285 (323)
Q Consensus       214 ~~~~~~~l~~~~~d~--i~iwd~~~~-~~~~~~~~~~~~~-~v~~~--~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~--  285 (323)
                      |.++|+.|.+|+...  |-.||++.- .++..  +..|.. .-..|  ...|++    +.|+.++.+|.+.+|+.+..  
T Consensus       258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~--L~rhv~~TNQRI~FDld~~~----~~LasG~tdG~V~vwdlk~~gn  331 (406)
T KOG2919|consen  258 WCEDGNKLFSGARKDDKILCWDIRYSRDPVYA--LERHVGDTNQRILFDLDPKG----EILASGDTDGSVRVWDLKDLGN  331 (406)
T ss_pred             eccCcCeecccccCCCeEEEEeehhccchhhh--hhhhccCccceEEEecCCCC----ceeeccCCCccEEEEecCCCCC
Confidence            999999999998755  999999864 44444  444443 22333  446777    89999999999999999874  


Q ss_pred             ---cCCCCccceeEEEEeeCCCeeEeeecC
Q psy11524        286 ---LDKPDTGSVYDLVWSSDATQIAGACAN  312 (323)
Q Consensus       286 ---~~~~~~~~v~~~~~s~~g~~l~s~~~d  312 (323)
                         +...|...++.++++|--..+++++..
T Consensus       332 ~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  332 EVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             cccccccccccccceecCcccceeeeccCc
Confidence               555678899999999998888887643

>KOG4378|consensus

Probab=99.84  E-value=4.1e-19  Score=144.62  Aligned_cols=233  Identities=14%  Similarity=0.146  Sum_probs=175.2

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc---eeEe-eccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK---ATKW-QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG  156 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~  156 (323)
                      ...+.+++|+.....++.....+..+.+|...++   +..+ ......-.|++......++++|+..+.|+   |||++.
T Consensus        34 ~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vk---iwdl~~  110 (673)
T KOG4378|consen   34 EPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVK---IWDLRA  110 (673)
T ss_pred             CCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceee---ehhhHH
Confidence            4459999999876533333333458899987766   1111 11122334555555568999999999999   999985


Q ss_pred             Cee-eEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecCCC--CccEEEEEEcCCCCE-EEEEecCc-EE
Q psy11524        157 RQL-YSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDKPD--TGSVYDLVWSNDATQ-IAGACANV-IH  230 (323)
Q Consensus       157 ~~~-~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~-l~~~~~d~-i~  230 (323)
                      +.+ +.+..|...|+++.++....+||+++.+ .|.|..+.+........+  ...++-+.|+|..+. |.+++++| |.
T Consensus       111 kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt  190 (673)
T KOG4378|consen  111 KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT  190 (673)
T ss_pred             HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence            544 5567899999999999999999999995 899999875543332223  445789999997775 45677788 99


Q ss_pred             EEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCee
Q psy11524        231 IFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQI  306 (323)
Q Consensus       231 iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l  306 (323)
                      +||+....++... ...|..+...++|+|...   ..++....|.++.+|+....    .... ..+..+++|+++|.+|
T Consensus       191 lwDv~g~sp~~~~-~~~HsAP~~gicfspsne---~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L  265 (673)
T KOG4378|consen  191 LWDVQGMSPIFHA-SEAHSAPCRGICFSPSNE---ALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYL  265 (673)
T ss_pred             EEeccCCCcccch-hhhccCCcCcceecCCcc---ceEEEecccceEEEeecccccccceeee-cCCcceeeecCCceEE
Confidence            9999888777653 467999999999999873   67777788888888888753    1112 5678999999999999


Q ss_pred             EeeecCCeEEEEEee
Q psy11524        307 AGACANGSLLLGTII  321 (323)
Q Consensus       307 ~s~~~dg~i~~~~l~  321 (323)
                      +.|...|.|..||+.
T Consensus       266 ~aG~s~G~~i~YD~R  280 (673)
T KOG4378|consen  266 CAGNSKGELIAYDMR  280 (673)
T ss_pred             EeecCCceEEEEecc
Confidence            999999999999984

>KOG4497|consensus

Probab=99.83  E-value=6.8e-20  Score=141.97  Aligned_cols=217  Identities=14%  Similarity=0.090  Sum_probs=162.4

Q ss_pred             EEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEE-EEcCCCceEeeeEEeCC-CCeeeEe
Q psy11524         86 SAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLIL-SGGEDCKYKASFVWDTD-GRQLYSS  162 (323)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~i~v~d~~-~~~~~~~  162 (323)
                      -++|||+|+++|+++..  .+.+-|.++- +..+...-..|.-+.|..|..+++ ....++.|.   +|++. .+-..++
T Consensus        13 ~c~fSp~g~yiAs~~~y--rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vq---vwsl~Qpew~ckI   87 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY--RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQ---VWSLVQPEWYCKI   87 (447)
T ss_pred             ceeECCCCCeeeeeeee--EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEE---EEEeecceeEEEe
Confidence            47899999999998776  4555454433 222222345677889998876654 456788999   99995 5556677


Q ss_pred             ecCCCceeEEEEecCCCEEEEEeC-C-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc----EEEEEcCC
Q psy11524        163 LTHDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV----IHIFDISS  236 (323)
Q Consensus       163 ~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----i~iwd~~~  236 (323)
                      .....++.+++|||||+.++..++ + .|.+|.+.++......-....+..++|+|||++.+..+...    +.|.....
T Consensus        88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~  167 (447)
T KOG4497|consen   88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA  167 (447)
T ss_pred             ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence            778889999999999998888887 8 99999998776655544455678999999999998887643    44444344


Q ss_pred             CceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccccCCCCccceeEEEEeeCCCeeEeeecCCeEE
Q psy11524        237 SSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLL  316 (323)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~  316 (323)
                      ...+..  +.......+.+.|+|||    +.+++|+.--.-.++-.+-      +-.+..++|+|.+++|+.|+.|+.++
T Consensus       168 W~ll~~--f~~dT~DltgieWsPdg----~~laVwd~~Leykv~aYe~------~lG~k~v~wsP~~qflavGsyD~~lr  235 (447)
T KOG4497|consen  168 WILLKE--FKLDTIDLTGIEWSPDG----NWLAVWDNVLEYKVYAYER------GLGLKFVEWSPCNQFLAVGSYDQMLR  235 (447)
T ss_pred             HHHHHh--cCCCcccccCceECCCC----cEEEEecchhhheeeeeee------ccceeEEEeccccceEEeeccchhhh
Confidence            455555  44455677889999999    9999998655444433332      56789999999999999999999998


Q ss_pred             EEE
Q psy11524        317 LGT  319 (323)
Q Consensus       317 ~~~  319 (323)
                      +-+
T Consensus       236 vln  238 (447)
T KOG4497|consen  236 VLN  238 (447)
T ss_pred             hhc
Confidence            754

>KOG1523|consensus

Probab=99.83  E-value=1e-18  Score=134.90  Aligned_cols=214  Identities=17%  Similarity=0.322  Sum_probs=161.4

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-----eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-----ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT  154 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~  154 (323)
                      ..++|+|.+|++|++.+|++.... .+.+|...+.     .+++..|...|+.++|+|..+.|++++.|..-+   +|..
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~-evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnay---Vw~~   84 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNH-EVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAY---VWTQ   84 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCc-eEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcc---cccc
Confidence            368999999999999999887663 6777755433     678899999999999999999999999999999   9998


Q ss_pred             -CC---CeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCee-----eecCCCCccEEEEEEcCCCCEEEEE
Q psy11524        155 -DG---RQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSH-----SLDKPDTGSVYDLVWSNDATQIAGA  224 (323)
Q Consensus       155 -~~---~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~  224 (323)
                       .+   ++...+..+....+++.|+|.++.||+|+.. .|.+|-.+.+.-     ...+++...|.+++|+|++-+|++|
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG  164 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG  164 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence             33   4455667788899999999999999999996 788877664322     2455678889999999999999999


Q ss_pred             ecCc-EEEEEcC------------------CCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc
Q psy11524        225 CANV-IHIFDIS------------------SSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS  285 (323)
Q Consensus       225 ~~d~-i~iwd~~------------------~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~  285 (323)
                      +.|+ .++|..-                  -|+.+.+  +....+.+..+.|+|.|    ..|+-..-++.+.+-+....
T Consensus       165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E--~~~~ggwvh~v~fs~sG----~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE--ASSSGGWVHGVLFSPSG----NRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh--hccCCCceeeeEeCCCC----CEeeEecCCCceEEeecCCC
Confidence            9999 9999621                  1223333  33556789999999999    56665555655555544332


Q ss_pred             -----cCCCCccceeEEEEeeCC
Q psy11524        286 -----LDKPDTGSVYDLVWSSDA  303 (323)
Q Consensus       286 -----~~~~~~~~v~~~~~s~~g  303 (323)
                           .......+..++.|-.+.
T Consensus       239 ~~~v~~~~~~~lP~ls~~~ise~  261 (361)
T KOG1523|consen  239 SERVQSVATAQLPLLSVSWISEN  261 (361)
T ss_pred             chhccchhhccCCceeeEeecCC
Confidence                 011113556677776553

>KOG0290|consensus

Probab=99.83  E-value=6.9e-18  Score=128.75  Aligned_cols=224  Identities=19%  Similarity=0.311  Sum_probs=170.2

Q ss_pred             ecCCCCCEEEEEEcCCCC-----eEEEEeeCCeEEEEeCCCCc---e--------eEeeccCCCeEEEEECC-CCCEEEE
Q psy11524         77 TLNVSPPVYSAAWSPDSN-----KVLLTQAKSLVIKPLSPNNK---A--------TKWQAHDGLILKVAWCS-STDLILS  139 (323)
Q Consensus        77 ~~~~~~~v~~~~~sp~~~-----~l~~~~~~~~~v~~~~~~~~---~--------~~~~~~~~~v~~~~~~~-~~~~l~~  139 (323)
                      .+.|..+++.+.|.|+.+     .||+ +++  .+++|.....   .        .+-..+..++++..|+. |.+++.+
T Consensus        92 ~fd~~YP~tK~~wiPd~~g~~pdlLAT-s~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igt  168 (364)
T KOG0290|consen   92 NFDHPYPVTKLMWIPDSKGVYPDLLAT-SSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGT  168 (364)
T ss_pred             CCCCCCCccceEecCCccccCcchhhc-ccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEe
Confidence            356899999999999873     4554 334  7889977632   1        11234667899999987 6789999


Q ss_pred             EcCCCceEeeeEEeCCCC----eeeEeecCCCceeEEEEecCCC-EEEEEeCC-eEEEEeCCCCeeee-c--CCC-CccE
Q psy11524        140 GGEDCKYKASFVWDTDGR----QLYSSLTHDHPISSLAWAPGGD-MFAVGSYN-TLRLCDKVGWSHSL-D--KPD-TGSV  209 (323)
Q Consensus       140 ~~~d~~i~~i~v~d~~~~----~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~~-~i~i~d~~~~~~~~-~--~~~-~~~v  209 (323)
                      ++-|.+..   |||++.+    ...++..|+.+|..++|...+. .||+.+.| .+++||++.....+ +  .+. ..+.
T Consensus       169 SSiDTTCT---iWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pL  245 (364)
T KOG0290|consen  169 SSIDTTCT---IWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPL  245 (364)
T ss_pred             ecccCeEE---EEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcc
Confidence            99999999   9999643    3567788999999999998654 57888875 99999998654332 1  122 4568


Q ss_pred             EEEEEcC-CCCEEEEEecCc--EEEEEcCCC-ceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc
Q psy11524        210 YDLVWSN-DATQIAGACANV--IHIFDISSS-SSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS  285 (323)
Q Consensus       210 ~~~~~~~-~~~~l~~~~~d~--i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~  285 (323)
                      ..++|++ |-+++|+-..|.  |.|.|++.. .++.+  +.+|.+.|+.++|.|...   ..|..+..|....+|++...
T Consensus       246 lRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~--L~~H~a~VNgIaWaPhS~---~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  246 LRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR--LRNHQASVNGIAWAPHSS---SHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             eeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh--hhcCcccccceEecCCCC---ceeeecCCcceEEEEecccc
Confidence            8999998 667888888777  999999864 45556  899999999999999874   77888888888888888763


Q ss_pred             ----------cCCCCccceeEEEEeeC-CCeeEeeecC
Q psy11524        286 ----------LDKPDTGSVYDLVWSSD-ATQIAGACAN  312 (323)
Q Consensus       286 ----------~~~~~~~~v~~~~~s~~-g~~l~s~~~d  312 (323)
                                ... .++.|+.+.|+|. +.+++.+...
T Consensus       321 ~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  321 PRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             cccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence                      122 2678999999965 5577776543

>KOG2445|consensus

Probab=99.83  E-value=5.2e-18  Score=130.35  Aligned_cols=231  Identities=13%  Similarity=0.197  Sum_probs=170.3

Q ss_pred             eecccceeEeeEeccCCcceeeeeeccccccccceee------------ec-CCCCCEEEEEEcC--CCCeEEEEeeCCe
Q psy11524         40 IRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCR------------TL-NVSPPVYSAAWSP--DSNKVLLTQAKSL  104 (323)
Q Consensus        40 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~-~~~~~v~~~~~sp--~~~~l~~~~~~~~  104 (323)
                      -.+|++-|.++.|.+.|..++++..    |++.+++.            .. .|.+.|..+.|.+  -|+.+|+++.|+ 
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSs----Dq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr-   83 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSS----DQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR-   83 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccC----CCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC-
Confidence            3588999999999999976665544    44444433            11 2899999999976  589999998884 


Q ss_pred             EEEEeCCCCc-----------eeEeeccCCCeEEEEECCC--CCEEEEEcCCCceEeeeEEeC-CCCee------eEe--
Q psy11524        105 VIKPLSPNNK-----------ATKWQAHDGLILKVAWCSS--TDLILSGGEDCKYKASFVWDT-DGRQL------YSS--  162 (323)
Q Consensus       105 ~v~~~~~~~~-----------~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~i~v~d~-~~~~~------~~~--  162 (323)
                      .+.+|.....           ..++......|+++.|.|.  |-.||+++.||.++   ||+. +...+      ..+  
T Consensus        84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lR---IYEA~dp~nLs~W~Lq~Ei~~  160 (361)
T KOG2445|consen   84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILR---IYEAPDPMNLSQWTLQHEIQN  160 (361)
T ss_pred             ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEE---EEecCCccccccchhhhhhhh
Confidence            9999976321           3345667789999999995  77899999999999   9986 21111      111  


Q ss_pred             -----ecCCCceeEEEEecC---CCEEEEEeCC------eEEEEeCC--CC---eeeecCCCCccEEEEEEcCC-C---C
Q psy11524        163 -----LTHDHPISSLAWAPG---GDMFAVGSYN------TLRLCDKV--GW---SHSLDKPDTGSVYDLVWSND-A---T  219 (323)
Q Consensus       163 -----~~~~~~v~~~~~~p~---~~~l~~~~~~------~i~i~d~~--~~---~~~~~~~~~~~v~~~~~~~~-~---~  219 (323)
                           ..+..+..|+.|+|.   ..+||+|+.+      .++||...  +.   .+..+.+|..+|+.++|.|+ |   .
T Consensus       161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~  240 (361)
T KOG2445|consen  161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYH  240 (361)
T ss_pred             ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCcee
Confidence                 135567889999984   5678888875      68888743  21   23356689999999999995 2   4


Q ss_pred             EEEEEecCcEEEEEcCCC--------------------ceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEE
Q psy11524        220 QIAGACANVIHIFDISSS--------------------SSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYL  279 (323)
Q Consensus       220 ~l~~~~~d~i~iwd~~~~--------------------~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~  279 (323)
                      .||+++.|||+||.++..                    +.+..  +.+|++.|+.+.|+-.|    ..|..-..||.+++
T Consensus       241 ~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~--~~~H~~~VWrv~wNmtG----tiLsStGdDG~VRL  314 (361)
T KOG2445|consen  241 LLAVATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSE--LDDHNGEVWRVRWNMTG----TILSSTGDDGCVRL  314 (361)
T ss_pred             eEEEeecCcEEEEEEeeccchhhhhcccCCCCccccceEEeee--ccCCCCceEEEEEeeee----eEEeecCCCceeee
Confidence            789999999999987631                    12223  67899999999999998    67777777888888


Q ss_pred             Eeccc
Q psy11524        280 SMWSH  284 (323)
Q Consensus       280 ~~~~~  284 (323)
                      |...-
T Consensus       315 Wkany  319 (361)
T KOG2445|consen  315 WKANY  319 (361)
T ss_pred             hhhhh
Confidence            76543

>KOG4378|consensus

Probab=99.83  E-value=2.2e-19  Score=146.15  Aligned_cols=210  Identities=15%  Similarity=0.217  Sum_probs=168.2

Q ss_pred             CEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeee
Q psy11524         83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLY  160 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~  160 (323)
                      .-.|++......++++|+.. +.|++||+..+  .+.+..|...|+++.++....+||+++..|.|.   +..+..+...
T Consensus        81 ~~~Cv~~~s~S~y~~sgG~~-~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdii---ih~~~t~~~t  156 (673)
T KOG4378|consen   81 NAFCVACASQSLYEISGGQS-GCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDII---IHGTKTKQKT  156 (673)
T ss_pred             hHHHHhhhhcceeeeccCcC-ceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEE---EEecccCccc
Confidence            44555555556788887766 69999999876  566889999999999999999999999999999   9998654443


Q ss_pred             -EeecC-CCceeEEEEecCCCE-EEEEeCC-eEEEEeCCCCe--eeecCCCCccEEEEEEcC-CCCEEEEEecCc-EEEE
Q psy11524        161 -SSLTH-DHPISSLAWAPGGDM-FAVGSYN-TLRLCDKVGWS--HSLDKPDTGSVYDLVWSN-DATQIAGACANV-IHIF  232 (323)
Q Consensus       161 -~~~~~-~~~v~~~~~~p~~~~-l~~~~~~-~i~i~d~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~-i~iw  232 (323)
                       .+... ...|.-+.|+|..+. |.+++++ .|.+||+.+..  ......|..+...++|+| +..+|++.+.|. |.+|
T Consensus       157 t~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~y  236 (673)
T KOG4378|consen  157 TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIY  236 (673)
T ss_pred             cceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEe
Confidence             34333 234668999997766 4556664 99999998753  335667999999999999 556788899999 9999


Q ss_pred             EcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----cCCCCccceeEEEEeeCC
Q psy11524        233 DISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----LDKPDTGSVYDLVWSSDA  303 (323)
Q Consensus       233 d~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g  303 (323)
                      |.+..+....   .....+...++|+++|    .+++.++..|.+..|+++..     +...|...|++++|-|.-
T Consensus       237 D~~s~~s~~~---l~y~~Plstvaf~~~G----~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  237 DIRSQASTDR---LTYSHPLSTVAFSECG----TYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             ecccccccce---eeecCCcceeeecCCc----eEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            9998777665   3455689999999999    89999999999999999875     445578889999998764

>KOG1587|consensus

Probab=99.82  E-value=3.9e-18  Score=146.81  Aligned_cols=239  Identities=18%  Similarity=0.137  Sum_probs=179.0

Q ss_pred             eeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCcee--------EeeccCCCeEEEEECCCC--CEEEEEcCCC
Q psy11524         75 CRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKAT--------KWQAHDGLILKVAWCSST--DLILSGGEDC  144 (323)
Q Consensus        75 ~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~--~~l~~~~~d~  144 (323)
                      ...+.....|++++|+|....+++||..+|.|.+||+.....        ....|..++..+.|..+.  .-+++++.||
T Consensus       236 e~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG  315 (555)
T KOG1587|consen  236 ELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDG  315 (555)
T ss_pred             eEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCC
Confidence            344556889999999998888888888889999999876522        224688999999997754  4599999999


Q ss_pred             ceEeeeEEeCCC--C-----eeeEee------cCCCceeEEEEec-CCCEEEEEeC-CeEEEEeC---CCCe------ee
Q psy11524        145 KYKASFVWDTDG--R-----QLYSSL------THDHPISSLAWAP-GGDMFAVGSY-NTLRLCDK---VGWS------HS  200 (323)
Q Consensus       145 ~i~~i~v~d~~~--~-----~~~~~~------~~~~~v~~~~~~p-~~~~l~~~~~-~~i~i~d~---~~~~------~~  200 (323)
                      .|.   .|+++.  .     +.....      .....+++++|.+ +...|++|++ |.|.--+.   +...      +.
T Consensus       316 ~i~---~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~  392 (555)
T KOG1587|consen  316 SIC---SWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHS  392 (555)
T ss_pred             cEe---eeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccc
Confidence            999   998841  1     111111      2234688999998 5667888888 66665332   2222      23


Q ss_pred             ecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcC-CCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeE
Q psy11524        201 LDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDIS-SSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLY  278 (323)
Q Consensus       201 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~  278 (323)
                      ....|.++|+.+.++|=+..++..+.|. ++||... ...++..  +..+...+++++|||...   ..+++.+.+|.+.
T Consensus       393 ~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~--~~~~~~~v~~vaWSptrp---avF~~~d~~G~l~  467 (555)
T KOG1587|consen  393 TFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLS--LDSSPDYVTDVAWSPTRP---AVFATVDGDGNLD  467 (555)
T ss_pred             cccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchh--hhhccceeeeeEEcCcCc---eEEEEEcCCCcee
Confidence            4556889999999999665555444477 9999977 5666665  566677799999999873   7888899999999


Q ss_pred             EEecccc------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        279 LSMWSHS------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       279 ~~~~~~~------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +|++...      ..+.+......+.|++.|+.|++|...|.+++|++.
T Consensus       468 iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  468 IWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             hhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            9999764      222234566788899999999999999999999984

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.82  E-value=1.6e-17  Score=143.71  Aligned_cols=206  Identities=10%  Similarity=0.024  Sum_probs=146.1

Q ss_pred             eEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCC---CceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCC
Q psy11524        104 LVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGED---CKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGD  179 (323)
Q Consensus       104 ~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~  179 (323)
                      ..|+++|..+. .+.+..+...+..++|+|||+.|+..+..   ..|.   +||+.+.....+....+.+...+|+|||+
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~---~~dl~~g~~~~l~~~~g~~~~~~~SPDG~  258 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVY---LLDLETGQRELVGNFPGMTFAPRFSPDGR  258 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEE---EEECCCCcEEEeecCCCcccCcEECCCCC
Confidence            37888988765 56778888899999999999998887643   4455   99998666667776777788899999999


Q ss_pred             EEEEEeC--C--eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEec-Cc---EEEEEcCCCceeeeecCCCCccc
Q psy11524        180 MFAVGSY--N--TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACA-NV---IHIFDISSSSSSNVTAPLSHSHE  251 (323)
Q Consensus       180 ~l~~~~~--~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~---i~iwd~~~~~~~~~~~~~~~~~~  251 (323)
                      .|+....  +  .|++||+.+.....+..+........|+|||+.|+..+. ++   |+++|+..++....   ......
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l---t~~~~~  335 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI---SFGGGR  335 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe---ecCCCc
Confidence            8765443  2  688889887666666656666778999999999887764 32   88889877655442   333445


Q ss_pred             eEEEEEccCCCCccceEEEEeCCC---CeEEEecccc---cCCCCccceeEEEEeeCCCeeEeeecC------CeEEEEE
Q psy11524        252 ITQLAVNQTGSLQERHVAFIDKNR---DLYLSMWSHS---LDKPDTGSVYDLVWSSDATQIAGACAN------GSLLLGT  319 (323)
Q Consensus       252 v~~~~~~p~g~~~d~~l~~~~~~~---~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~d------g~i~~~~  319 (323)
                      +..+.|+|+|    +.|++...++   .+.+++....   .... ...+..++|+|||+.|+..+.+      ..+++.+
T Consensus       336 ~~~~~~SpdG----~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d  410 (435)
T PRK05137        336 YSTPVWSPRG----DLIAFTKQGGGQFSIGVMKPDGSGERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD  410 (435)
T ss_pred             ccCeEECCCC----CEEEEEEcCCCceEEEEEECCCCceEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence            6678999999    6776655432   3445554332   1111 2346789999999988765543      2455555


Q ss_pred             e
Q psy11524        320 I  320 (323)
Q Consensus       320 l  320 (323)
                      +
T Consensus       411 l  411 (435)
T PRK05137        411 L  411 (435)
T ss_pred             C
Confidence            4

>KOG0270|consensus

Probab=99.82  E-value=1.3e-18  Score=139.71  Aligned_cols=228  Identities=16%  Similarity=0.235  Sum_probs=160.6

Q ss_pred             EEEEEEcCCCCeEEEEeeCC----eEEEEeCCCCceeEeecc-----CCCeEEEEECCC-------CCEEEEEcCCCceE
Q psy11524         84 VYSAAWSPDSNKVLLTQAKS----LVIKPLSPNNKATKWQAH-----DGLILKVAWCSS-------TDLILSGGEDCKYK  147 (323)
Q Consensus        84 v~~~~~sp~~~~l~~~~~~~----~~v~~~~~~~~~~~~~~~-----~~~v~~~~~~~~-------~~~l~~~~~d~~i~  147 (323)
                      .-.+..-|+...|+++-..+    ..+++|+....  .+..|     .....|++|...       |+++|.|+.|..|.
T Consensus       128 ~de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~--nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie  205 (463)
T KOG0270|consen  128 KDEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEE--NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE  205 (463)
T ss_pred             cccceeccCCcEEEEeeccCCceEEEEEEEcCCCc--ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence            44566677777777665332    34677766543  11112     234456677432       67999999999999


Q ss_pred             eeeEEeCC--C--CeeeE------------------eecCCCceeEEEEecC-CCEEEEEeCC-eEEEEeCC-CCeeeec
Q psy11524        148 ASFVWDTD--G--RQLYS------------------SLTHDHPISSLAWAPG-GDMFAVGSYN-TLRLCDKV-GWSHSLD  202 (323)
Q Consensus       148 ~i~v~d~~--~--~~~~~------------------~~~~~~~v~~~~~~p~-~~~l~~~~~~-~i~i~d~~-~~~~~~~  202 (323)
                         |||++  .  .+...                  -.+|+..|..++|+.+ .+.||+|+.| +|.+||+. +++...+
T Consensus       206 ---IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~  282 (463)
T KOG0270|consen  206 ---IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSI  282 (463)
T ss_pred             ---EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceeh
Confidence               99983  1  11111                  1246777888888875 4568888888 99999987 4566667


Q ss_pred             CCCCccEEEEEEcC-CCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEE
Q psy11524        203 KPDTGSVYDLVWSN-DATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLS  280 (323)
Q Consensus       203 ~~~~~~v~~~~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~  280 (323)
                      ..|.+.|.++.|+| ...+|++|+.|+ +.+.|.+.......  .-...+.|..++|.|...   ..+.+...+|.++-+
T Consensus       283 ~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~--~wk~~g~VEkv~w~~~se---~~f~~~tddG~v~~~  357 (463)
T KOG0270|consen  283 THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK--EWKFDGEVEKVAWDPHSE---NSFFVSTDDGTVYYF  357 (463)
T ss_pred             hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc--eEEeccceEEEEecCCCc---eeEEEecCCceEEee
Confidence            67899999999999 567899999999 99999985322221  123456899999999874   444444555666655


Q ss_pred             ecccc-----cCCCCccceeEEEEeeCCC-eeEeeecCCeEEEEEee
Q psy11524        281 MWSHS-----LDKPDTGSVYDLVWSSDAT-QIAGACANGSLLLGTII  321 (323)
Q Consensus       281 ~~~~~-----~~~~~~~~v~~~~~s~~g~-~l~s~~~dg~i~~~~l~  321 (323)
                      +.+..     ..+.|.++|.++++++.-. .|++++.|+.+++|++.
T Consensus       358 D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~  404 (463)
T KOG0270|consen  358 DIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFD  404 (463)
T ss_pred             ecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeec
Confidence            55543     3445899999999998754 78899999999999984

>KOG4497|consensus

Probab=99.82  E-value=4e-18  Score=132.24  Aligned_cols=263  Identities=14%  Similarity=0.147  Sum_probs=181.4

Q ss_pred             eEeccCCcceeeeeeccc--cc-cccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCC
Q psy11524         50 YPISPYISVLHSYAASHS--WP-QALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGL  124 (323)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~  124 (323)
                      +.|||+|+.++++.....  -| .+.++.+.+.--..|..+.|..|..+++.+...++.|.+|++.+.  ...+.....+
T Consensus        14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ag   93 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAG   93 (447)
T ss_pred             eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCc
Confidence            689999976665443321  12 334444444445788899999999999999888889999999877  5567777889


Q ss_pred             eEEEEECCCCCEEE-EEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC-C---------------
Q psy11524        125 ILKVAWCSSTDLIL-SGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-N---------------  187 (323)
Q Consensus       125 v~~~~~~~~~~~l~-~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~---------------  187 (323)
                      +.+++|||||+.++ +..-+-+|.   +|.+.++....+...+..+..++|+|||++.+..+. |               
T Consensus        94 ls~~~WSPdgrhiL~tseF~lriT---VWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l  170 (447)
T KOG4497|consen   94 LSSISWSPDGRHILLTSEFDLRIT---VWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL  170 (447)
T ss_pred             ceeeeECCCcceEeeeecceeEEE---EEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence            99999999996555 555688899   999988888888777778899999999999888764 3               


Q ss_pred             ---------------------eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCC---------
Q psy11524        188 ---------------------TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISS---------  236 (323)
Q Consensus       188 ---------------------~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~---------  236 (323)
                                           .+.+||---.-......-.-.+..++|+|.+++|++|+.|+ +++-+--+         
T Consensus       171 l~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflh  250 (447)
T KOG4497|consen  171 LKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLH  250 (447)
T ss_pred             HHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhcc
Confidence                                 12222211000000111224578899999999999999999 88765000         


Q ss_pred             -----------------------------------------Cc----------eeeeec----CCCCccceEEEEEccCC
Q psy11524        237 -----------------------------------------SS----------SSNVTA----PLSHSHEITQLAVNQTG  261 (323)
Q Consensus       237 -----------------------------------------~~----------~~~~~~----~~~~~~~v~~~~~~p~g  261 (323)
                                                               .+          .+..++    +......+.-++|++|.
T Consensus       251 l~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds  330 (447)
T KOG4497|consen  251 LCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS  330 (447)
T ss_pred             chhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc
Confidence                                                     00          000000    11123356678899987


Q ss_pred             CCccceEEEEeCC--CCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        262 SLQERHVAFIDKN--RDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       262 ~~~d~~l~~~~~~--~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                          .+++.-+..  +.+.+|++...    +... ..+|....|+|....|+.+....++++|..
T Consensus       331 ----~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ-k~piraf~WdP~~prL~vctg~srLY~W~p  390 (447)
T KOG4497|consen  331 ----TYAATRNDKYPNALWLWDLQNLKLHAVLIQ-KHPIRAFEWDPGRPRLVVCTGKSRLYFWAP  390 (447)
T ss_pred             ----eEEeeecCCCCceEEEEechhhhhhhhhhh-ccceeEEEeCCCCceEEEEcCCceEEEEcC
Confidence                566655432  45677887663    2222 678999999999999998888888999864

>KOG1188|consensus

Probab=99.82  E-value=1.3e-18  Score=135.41  Aligned_cols=222  Identities=13%  Similarity=0.160  Sum_probs=157.8

Q ss_pred             CeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECC--CCCEEEEEcCCCceEeeeEEeCC---CCeeeEeecCC
Q psy11524         94 NKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCS--STDLILSGGEDCKYKASFVWDTD---GRQLYSSLTHD  166 (323)
Q Consensus        94 ~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~i~v~d~~---~~~~~~~~~~~  166 (323)
                      ..+|++-+. |.|++||..+.  +..+++++..+..+.|..  .+..+.+|+.||+|+   +||++   ......+..+.
T Consensus        41 ~~vav~lSn-gsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr---~wD~Rs~~e~a~~~~~~~~  116 (376)
T KOG1188|consen   41 TAVAVSLSN-GSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVR---LWDIRSQAESARISWTQQS  116 (376)
T ss_pred             eeEEEEecC-CeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEE---EEEeecchhhhheeccCCC
Confidence            345555444 68999987763  788999999999999987  357899999999999   99995   23334445554


Q ss_pred             -CceeEEEEecCCCEEEEEeC----C-eEEEEeCCCCee---eecCCCCccEEEEEEcC-CCCEEEEEecCc-EEEEEcC
Q psy11524        167 -HPISSLAWAPGGDMFAVGSY----N-TLRLCDKVGWSH---SLDKPDTGSVYDLVWSN-DATQIAGACANV-IHIFDIS  235 (323)
Q Consensus       167 -~~v~~~~~~p~~~~l~~~~~----~-~i~i~d~~~~~~---~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~-i~iwd~~  235 (323)
                       .+..+++.+.+++.+++|..    + .+.+||++....   .....|.+.|+++.|+| +.+.|++|+.|| +.+||++
T Consensus       117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~  196 (376)
T KOG1188|consen  117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK  196 (376)
T ss_pred             CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence             46777787777888988875    4 799999885432   35567999999999999 667999999999 9999987


Q ss_pred             CCc---eeeeecCCCCccceEEEEEccCCC--------------------------------------------------
Q psy11524        236 SSS---SSNVTAPLSHSHEITQLAVNQTGS--------------------------------------------------  262 (323)
Q Consensus       236 ~~~---~~~~~~~~~~~~~v~~~~~~p~g~--------------------------------------------------  262 (323)
                      ...   .+..  ...+...|..+.|..++.                                                  
T Consensus       197 ~d~EeDaL~~--viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~  274 (376)
T KOG1188|consen  197 KDNEEDALLH--VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHS  274 (376)
T ss_pred             CCcchhhHHH--hhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeeccc
Confidence            542   1222  345667788888877662                                                  


Q ss_pred             -CccceEEEEeC-CCCeEEEeccc---c--------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        263 -LQERHVAFIDK-NRDLYLSMWSH---S--------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       263 -~~d~~l~~~~~-~~~~~~~~~~~---~--------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                       +...+.++... .+...++.+..   .        +..+|..-|.++.|...+..|.+|+.||.+.+|+..
T Consensus       275 ~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  275 PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             CCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence             11122222222 22222222221   0        233466778899998888999999999999999853

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.82  E-value=8.6e-18  Score=144.67  Aligned_cols=214  Identities=15%  Similarity=0.105  Sum_probs=147.6

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeC--CeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEE-cCCCceEeeeEEeC
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAK--SLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSG-GEDCKYKASFVWDT  154 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~--~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~i~v~d~  154 (323)
                      .+...+.+.+|||||+.|++.+..  ...+++++..+. ...+....+.+..+.|+|||+.|+.. +.+|.. +|++||+
T Consensus       196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~-~I~~~d~  274 (429)
T PRK03629        196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSL-NLYVMDL  274 (429)
T ss_pred             cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCc-EEEEEEC
Confidence            356689999999999999987542  247888887655 34444445556678999999988765 445532 2449999


Q ss_pred             CCCeeeEeecCCCceeEEEEecCCCEEEEEeC-C---eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecC---
Q psy11524        155 DGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-N---TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN---  227 (323)
Q Consensus       155 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~---~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---  227 (323)
                      ++.....+......+....|+|||+.|+..+. +   .|+++|+.+.....+...........|+|||++|+..+.+   
T Consensus       275 ~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~  354 (429)
T PRK03629        275 ASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ  354 (429)
T ss_pred             CCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCC
Confidence            87777777666667889999999999887776 3   5666677765444433344456678999999998876543   


Q ss_pred             c-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCC---eEEEecccc---cCCCCccceeEEEEe
Q psy11524        228 V-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRD---LYLSMWSHS---LDKPDTGSVYDLVWS  300 (323)
Q Consensus       228 ~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~---~~~~~~~~~---~~~~~~~~v~~~~~s  300 (323)
                      . |.+||+.+++...   +... .......|+|||    ..|+....++.   +.++++...   ....|.+.+...+|+
T Consensus       355 ~~I~~~dl~~g~~~~---Lt~~-~~~~~p~~SpDG----~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Ws  426 (429)
T PRK03629        355 QHIAKQDLATGGVQV---LTDT-FLDETPSIAPNG----TMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWS  426 (429)
T ss_pred             ceEEEEECCCCCeEE---eCCC-CCCCCceECCCC----CEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCcccC
Confidence            3 8899998887543   2322 234568899999    67776665554   344444332   233456778888888


Q ss_pred             e
Q psy11524        301 S  301 (323)
Q Consensus       301 ~  301 (323)
                      |
T Consensus       427 p  427 (429)
T PRK03629        427 P  427 (429)
T ss_pred             C
Confidence            7

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=4.5e-17  Score=140.25  Aligned_cols=202  Identities=9%  Similarity=0.051  Sum_probs=140.3

Q ss_pred             eEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCC---CceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCC
Q psy11524        104 LVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGED---CKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGD  179 (323)
Q Consensus       104 ~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~  179 (323)
                      ..|+++|..+. .+.+..+...+...+|+|||+.|+..+..   ..+.   +|++.+.....+.........++|+|||+
T Consensus       179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~---i~dl~~G~~~~l~~~~~~~~~~~~SPDG~  255 (429)
T PRK03629        179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALV---IQTLANGAVRQVASFPRHNGAPAFSPDGS  255 (429)
T ss_pred             eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEE---EEECCCCCeEEccCCCCCcCCeEECCCCC
Confidence            37899998765 56677777889999999999998876532   3455   99997665555555555566789999999


Q ss_pred             EEEEEeC--C--eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecC-c---EEEEEcCCCceeeeecCCCCccc
Q psy11524        180 MFAVGSY--N--TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN-V---IHIFDISSSSSSNVTAPLSHSHE  251 (323)
Q Consensus       180 ~l~~~~~--~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~~~~~~~~  251 (323)
                      .|+....  +  .|++||+.+.....+..+...+....|+|||+.|+..+.+ +   |+++|+.+++...   +......
T Consensus       256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~---lt~~~~~  332 (429)
T PRK03629        256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR---ITWEGSQ  332 (429)
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE---eecCCCC
Confidence            9887643  3  6999999876555555555677899999999998877754 3   5555776665433   2333344


Q ss_pred             eEEEEEccCCCCccceEEEEeCC-C--CeEEEecccc---cCCCCccceeEEEEeeCCCeeEeeecCCeEE
Q psy11524        252 ITQLAVNQTGSLQERHVAFIDKN-R--DLYLSMWSHS---LDKPDTGSVYDLVWSSDATQIAGACANGSLL  316 (323)
Q Consensus       252 v~~~~~~p~g~~~d~~l~~~~~~-~--~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~  316 (323)
                      ...+.|+|+|    +.|+....+ +  .+.++++...   .... .......+|+|||+.|+.++.++...
T Consensus       333 ~~~~~~SpDG----~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~  398 (429)
T PRK03629        333 NQDADVSSDG----KFMVMVSSNGGQQHIAKQDLATGGVQVLTD-TFLDETPSIAPNGTMVIYSSSQGMGS  398 (429)
T ss_pred             ccCEEECCCC----CEEEEEEccCCCceEEEEECCCCCeEEeCC-CCCCCCceECCCCCEEEEEEcCCCce
Confidence            5678999999    666654433 2  3555665543   1111 12235688999999999888877533

>KOG0321|consensus

Probab=99.81  E-value=5.3e-18  Score=141.98  Aligned_cols=230  Identities=16%  Similarity=0.241  Sum_probs=162.0

Q ss_pred             EEEEEcC--CCCeEEEEeeCCeEEEEeCCCCc--------eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC
Q psy11524         85 YSAAWSP--DSNKVLLTQAKSLVIKPLSPNNK--------ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT  154 (323)
Q Consensus        85 ~~~~~sp--~~~~l~~~~~~~~~v~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~  154 (323)
                      .+..|++  ..+++++.+.++|.|.++|....        +..+..|...|..+.|.|....|++++.|.+++   +||+
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r---~Wdv  129 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIR---PWDV  129 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceee---eeee
Confidence            3456654  45566666666689999987654        345678999999999999667899999999999   9999


Q ss_pred             CC-CeeeE--eecCCCceeEEEEecC-CCEEEEEeCC-eEEEEeCCCCee----------------------------ee
Q psy11524        155 DG-RQLYS--SLTHDHPISSLAWAPG-GDMFAVGSYN-TLRLCDKVGWSH----------------------------SL  201 (323)
Q Consensus       155 ~~-~~~~~--~~~~~~~v~~~~~~p~-~~~l~~~~~~-~i~i~d~~~~~~----------------------------~~  201 (323)
                      .+ +....  +.+|.+.|.+++|.|. ...|++|+.| .+.|||++-...                            ..
T Consensus       130 k~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k  209 (720)
T KOG0321|consen  130 KTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK  209 (720)
T ss_pred             ccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence            64 33333  7889999999999995 5568888887 999999752110                            01


Q ss_pred             cCCCCccEEE---EEEcCCCCEEEEEec-Cc-EEEEEcCCCceeee------ecCCCC---ccceEEEEEccCCCCccce
Q psy11524        202 DKPDTGSVYD---LVWSNDATQIAGACA-NV-IHIFDISSSSSSNV------TAPLSH---SHEITQLAVNQTGSLQERH  267 (323)
Q Consensus       202 ~~~~~~~v~~---~~~~~~~~~l~~~~~-d~-i~iwd~~~~~~~~~------~~~~~~---~~~v~~~~~~p~g~~~d~~  267 (323)
                      ...+...+.+   +.+..|...||+++. |+ |++||++.......      ..+..+   ...+.++.....|    .+
T Consensus       210 ~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG----t~  285 (720)
T KOG0321|consen  210 WKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG----TY  285 (720)
T ss_pred             cccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC----Ce
Confidence            1123334555   666678889999887 88 99999987543322      112222   2356667777766    56


Q ss_pred             EEEEeCCCCeEEEecccc------cCCCC--ccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        268 VAFIDKNRDLYLSMWSHS------LDKPD--TGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       268 l~~~~~~~~~~~~~~~~~------~~~~~--~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +..-..|+.|+.|++...      .+.++  ..--..-..+||+.+|++|+.|...++|.+-
T Consensus       286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs  347 (720)
T KOG0321|consen  286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVS  347 (720)
T ss_pred             EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeec
Confidence            666666999999998774      11111  1111233468999999999999999999873

>KOG4227|consensus

Probab=99.81  E-value=8e-18  Score=133.54  Aligned_cols=268  Identities=11%  Similarity=0.076  Sum_probs=197.2

Q ss_pred             eeEeecccceeEeeEeccCCcceeeeeeccccccccceee--------------ecC--CCCCEEEEEEcCCCCeEEEEe
Q psy11524         37 HLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCR--------------TLN--VSPPVYSAAWSPDSNKVLLTQ  100 (323)
Q Consensus        37 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~--~~~~v~~~~~sp~~~~l~~~~  100 (323)
                      ...+.+|.++|+++.|+.++    .++++|.-|..+.+|.              ..+  |.+.|.|++|....+++++|+
T Consensus        49 qKD~~~H~GCiNAlqFS~N~----~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~  124 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHND----RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE  124 (609)
T ss_pred             hhhhhhhccccceeeeccCC----eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC
Confidence            35678999999999999998    6777776555555542              222  668999999999888888776


Q ss_pred             eCCeEEEEeCCCCc-eeEeecc---CCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCe----eeEeecCCCceeEE
Q psy11524        101 AKSLVIKPLSPNNK-ATKWQAH---DGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQ----LYSSLTHDHPISSL  172 (323)
Q Consensus       101 ~~~~~v~~~~~~~~-~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~----~~~~~~~~~~v~~~  172 (323)
                      .+ ++|..-|...+ ..-...|   .+.|..+.-+|..+.|++.+.++.|.   +||.+..+    +...........++
T Consensus       125 ~~-~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~---~~D~Rd~~~~~~~~~~AN~~~~F~t~  200 (609)
T KOG4227|consen  125 RW-GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVS---FIDNRDRQNPISLVLPANSGKNFYTA  200 (609)
T ss_pred             Cc-ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEE---EEeccCCCCCCceeeecCCCccceee
Confidence            66 68888888776 2223344   45899999999999999999999999   99995322    23334456678899


Q ss_pred             EEecC-CCEEEEEeC-CeEEEEeCCCCeeeec-----CCCCc---cEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceee
Q psy11524        173 AWAPG-GDMFAVGSY-NTLRLCDKVGWSHSLD-----KPDTG---SVYDLVWSNDATQIAGACANV-IHIFDISSSSSSN  241 (323)
Q Consensus       173 ~~~p~-~~~l~~~~~-~~i~i~d~~~~~~~~~-----~~~~~---~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~  241 (323)
                      .|+|- ..+|++.+. +-+.+||.+.+...++     .+...   .-.++.|+|+|..+.+.-... -.+||+-+.++..
T Consensus       201 ~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V  280 (609)
T KOG4227|consen  201 EFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFV  280 (609)
T ss_pred             eecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccccee
Confidence            99995 567777777 5899999875433211     11222   235788999999998887777 7788987754332


Q ss_pred             eecCCCCc-------cceEEEEEccCCCCccceEEEEeCCCCeEEEecccc---------------------------cC
Q psy11524        242 VTAPLSHS-------HEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---------------------------LD  287 (323)
Q Consensus       242 ~~~~~~~~-------~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---------------------------~~  287 (323)
                      .  -..|.       ..+.+++|..+     ..|+.++.+=.+++|.+...                           ++
T Consensus       281 ~--k~D~N~~GY~N~~T~KS~~F~~D-----~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VL  353 (609)
T KOG4227|consen  281 L--KSDHNPNGYCNIKTIKSMTFIDD-----YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVL  353 (609)
T ss_pred             E--eccCCCCcceeeeeeeeeeeecc-----eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEE
Confidence            1  12222       24566777765     56888877778888876532                           56


Q ss_pred             CCCccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        288 KPDTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       288 ~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      ++|.+-++.+.|+|....|++.+-...+++|.
T Consensus       354 rGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  354 RGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             ecccccccceeecCCcceEeccchhhheeccc
Confidence            77888999999999999999999999999995

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=3.1e-17  Score=141.98  Aligned_cols=185  Identities=14%  Similarity=0.126  Sum_probs=136.6

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeC--CeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEE-EEcCCCceEeeeEEeC
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAK--SLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLIL-SGGEDCKYKASFVWDT  154 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~--~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~i~v~d~  154 (323)
                      .+...+.+.+|+|||+.|++.+..  +..|++|+..+. ...+..+.+.+...+|+|||+.|+ +.+.++.. +||+||+
T Consensus       199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~-~Iy~~d~  277 (435)
T PRK05137        199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT-DIYTMDL  277 (435)
T ss_pred             cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCc-eEEEEEC
Confidence            467789999999999999988643  357999998765 455666777788999999998776 44555553 3448899


Q ss_pred             CCCeeeEeecCCCceeEEEEecCCCEEEEEeC--C--eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecC---
Q psy11524        155 DGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY--N--TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN---  227 (323)
Q Consensus       155 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---  227 (323)
                      ++.....+..+........|+|||+.++..+.  +  .|+++|+.+.....+......+..+.|+|+|++|+..+.+   
T Consensus       278 ~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~  357 (435)
T PRK05137        278 RSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQ  357 (435)
T ss_pred             CCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCc
Confidence            87777777777777778999999999888775  2  7999998876555444345567778999999999877643   


Q ss_pred             c-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEe
Q psy11524        228 V-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFID  272 (323)
Q Consensus       228 ~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~  272 (323)
                      . |.+||+..+.. ..  +.. ...+..+.|+|+|    +.|+...
T Consensus       358 ~~i~~~d~~~~~~-~~--lt~-~~~~~~p~~spDG----~~i~~~~  395 (435)
T PRK05137        358 FSIGVMKPDGSGE-RI--LTS-GFLVEGPTWAPNG----RVIMFFR  395 (435)
T ss_pred             eEEEEEECCCCce-Ee--ccC-CCCCCCCeECCCC----CEEEEEE
Confidence            3 88889765543 33  222 2356788999999    5665543

>KOG0290|consensus

Probab=99.80  E-value=2e-17  Score=126.26  Aligned_cols=240  Identities=17%  Similarity=0.254  Sum_probs=169.0

Q ss_pred             eeecCCCCCEEEEEEcC--C-CCeEEEEeeC---CeEEEEeCCC--Cc-eeE--eeccCCCeEEEEECCCC-----CEEE
Q psy11524         75 CRTLNVSPPVYSAAWSP--D-SNKVLLTQAK---SLVIKPLSPN--NK-ATK--WQAHDGLILKVAWCSST-----DLIL  138 (323)
Q Consensus        75 ~~~~~~~~~v~~~~~sp--~-~~~l~~~~~~---~~~v~~~~~~--~~-~~~--~~~~~~~v~~~~~~~~~-----~~l~  138 (323)
                      ...+...-+++++.|+.  + +.+||.|+..   ...|.+..+.  .. ...  -..|.-+++.+.|.|+.     .+||
T Consensus        38 iy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLA  117 (364)
T KOG0290|consen   38 IYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLA  117 (364)
T ss_pred             EEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhh
Confidence            34455677889999983  3 3467777632   1234443322  22 221  24688999999999985     3566


Q ss_pred             EEcCCCceEeeeEEeCC--CCeee--------EeecCCCceeEEEEec-CCCEEEEEeCC-eEEEEeCCCC----eeeec
Q psy11524        139 SGGEDCKYKASFVWDTD--GRQLY--------SSLTHDHPISSLAWAP-GGDMFAVGSYN-TLRLCDKVGW----SHSLD  202 (323)
Q Consensus       139 ~~~~d~~i~~i~v~d~~--~~~~~--------~~~~~~~~v~~~~~~p-~~~~l~~~~~~-~i~i~d~~~~----~~~~~  202 (323)
                      +++  ..++   +|.+.  ...+.        +-..+..+++++.|+. +.+++.+++-| ++.|||+...    ...++
T Consensus       118 Ts~--D~LR---lWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL  192 (364)
T KOG0290|consen  118 TSS--DFLR---LWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL  192 (364)
T ss_pred             ccc--CeEE---EEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence            553  4688   99984  22111        1133567899999997 66777777778 9999998753    23466


Q ss_pred             CCCCccEEEEEEcCCCC-EEEEEecCc-EEEEEcCCCceeeeec-CCCCccceEEEEEccCCCCccceEEEEeCCC-CeE
Q psy11524        203 KPDTGSVYDLVWSNDAT-QIAGACANV-IHIFDISSSSSSNVTA-PLSHSHEITQLAVNQTGSLQERHVAFIDKNR-DLY  278 (323)
Q Consensus       203 ~~~~~~v~~~~~~~~~~-~l~~~~~d~-i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~-~~~  278 (323)
                      ..|...|..++|...+. .+++.+.|| +++||++..+.-..+. -.....+...++|++...   +++++.-.++ .+.
T Consensus       193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp---nymATf~~dS~~V~  269 (364)
T KOG0290|consen  193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP---NYMATFAMDSNKVV  269 (364)
T ss_pred             EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCc---hHHhhhhcCCceEE
Confidence            67999999999998654 788999999 9999999765433310 122256788899988763   7777766554 456


Q ss_pred             EEecccc-----cCCCCccceeEEEEeeCC-CeeEeeecCCeEEEEEeec
Q psy11524        279 LSMWSHS-----LDKPDTGSVYDLVWSSDA-TQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       279 ~~~~~~~-----~~~~~~~~v~~~~~s~~g-~~l~s~~~dg~i~~~~l~~  322 (323)
                      +.+++..     .++.|.+.|++++|.|.. ..|+++++|..+.+|+|.+
T Consensus       270 iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  270 ILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             EEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence            6666654     566789999999999975 5899999999999999853

>KOG1445|consensus

Probab=99.79  E-value=4.9e-18  Score=142.44  Aligned_cols=223  Identities=17%  Similarity=0.217  Sum_probs=156.4

Q ss_pred             EcCCCCeEEEEe-eCCeEEEEeCCCCc------eeEeeccCCCeEEEEECC-CCCEEEEEcCCCceEeeeEEeCC-----
Q psy11524         89 WSPDSNKVLLTQ-AKSLVIKPLSPNNK------ATKWQAHDGLILKVAWCS-STDLILSGGEDCKYKASFVWDTD-----  155 (323)
Q Consensus        89 ~sp~~~~l~~~~-~~~~~v~~~~~~~~------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~i~v~d~~-----  155 (323)
                      |+.+.+++|+-- ...|.|-+++++..      +..-.-....|+.+.|.| |...||+++.||.|+   +|.+.     
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~---lWr~~a~gl~  663 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQIN---LWRLTANGLP  663 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEE---EEEeccCCCC
Confidence            334455555432 33578888887754      111112456789999999 778999999999999   99983     


Q ss_pred             ---CCeeeEeecCCCceeEEEEec-CCCEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCc-
Q psy11524        156 ---GRQLYSSLTHDHPISSLAWAP-GGDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANV-  228 (323)
Q Consensus       156 ---~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-  228 (323)
                         ...-..++.|...|+++.|+| -...|++++.| +|++||++.. ....+.+|.+.|..++|||+|+.+++.+.|+ 
T Consensus       664 e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~  743 (1012)
T KOG1445|consen  664 ENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT  743 (1012)
T ss_pred             cccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce
Confidence               234456788999999999999 46678899998 9999999854 4457788999999999999999999999999 


Q ss_pred             EEEEEcCCCce-eeeecCCC-CccceEEEEEccCCCCccceEEEEeCCC----CeEEEecccccCCCCccceeEE-----
Q psy11524        229 IHIFDISSSSS-SNVTAPLS-HSHEITQLAVNQTGSLQERHVAFIDKNR----DLYLSMWSHSLDKPDTGSVYDL-----  297 (323)
Q Consensus       229 i~iwd~~~~~~-~~~~~~~~-~~~~v~~~~~~p~g~~~d~~l~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~-----  297 (323)
                      |++|+.++++. +.+  -.+ ....-..+.|..+|    +++.+...+.    .+.+|+.... ... .-....+     
T Consensus       744 ~rVy~Prs~e~pv~E--g~gpvgtRgARi~wacdg----r~viv~Gfdk~SeRQv~~Y~Aq~l-~~~-pl~t~~lDvaps  815 (1012)
T KOG1445|consen  744 LRVYEPRSREQPVYE--GKGPVGTRGARILWACDG----RIVIVVGFDKSSERQVQMYDAQTL-DLR-PLYTQVLDVAPS  815 (1012)
T ss_pred             EEEeCCCCCCCcccc--CCCCccCcceeEEEEecC----cEEEEecccccchhhhhhhhhhhc-cCC-cceeeeecccCc
Confidence            99999887653 332  111 12234567888887    6666554433    3455555442 101 1111222     


Q ss_pred             ----EEeeCCC-eeEeeecCCeEEEEEeec
Q psy11524        298 ----VWSSDAT-QIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       298 ----~~s~~g~-~l~s~~~dg~i~~~~l~~  322 (323)
                          .+.+|.+ .+++|-.|..|.+|++..
T Consensus       816 ~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~  845 (1012)
T KOG1445|consen  816 PLVPHYDYDSNVLFLTGKGDRFVNMYEVIY  845 (1012)
T ss_pred             cccccccCCCceEEEecCCCceEEEEEecC
Confidence                2334554 566999999999999864

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=6.2e-17  Score=139.50  Aligned_cols=215  Identities=14%  Similarity=0.131  Sum_probs=142.1

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCC--eEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEE-EEcCCCceEeeeEEeC
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKS--LVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLIL-SGGEDCKYKASFVWDT  154 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~--~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~i~v~d~  154 (323)
                      .+...+.+.+|+|||+.|++++..+  ..|++|+..+. ...+....+.+..++|+|||+.|+ +.+.++... ||++|+
T Consensus       193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~-Iy~~d~  271 (427)
T PRK02889        193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQ-IYTVNA  271 (427)
T ss_pred             cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCce-EEEEEC
Confidence            4677899999999999999887543  46999998765 444554556677899999999886 456677654 335566


Q ss_pred             CCCeeeEeecCCCceeEEEEecCCCEEEEEeC--C--eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecC---
Q psy11524        155 DGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY--N--TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN---  227 (323)
Q Consensus       155 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---  227 (323)
                      ++.....+..+........|+|||+.|+..+.  +  .|+.+++.+................+|+|+|++|+..+.+   
T Consensus       272 ~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~  351 (427)
T PRK02889        272 DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGA  351 (427)
T ss_pred             CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCc
Confidence            66666777666666678899999999887765  3  4555565544333222223344568999999999876643   


Q ss_pred             c-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEe-CCCCeEEEe--cccc---cCCCCccceeEEEEe
Q psy11524        228 V-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFID-KNRDLYLSM--WSHS---LDKPDTGSVYDLVWS  300 (323)
Q Consensus       228 ~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~-~~~~~~~~~--~~~~---~~~~~~~~v~~~~~s  300 (323)
                      . |.+||+.+++....   ... .....+.|+|+|    +.|.... ..+...++-  ....   ....+.+.+...+|+
T Consensus       352 ~~I~v~d~~~g~~~~l---t~~-~~~~~p~~spdg----~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~ws  423 (427)
T PRK02889        352 FKLYVQDLATGQVTAL---TDT-TRDESPSFAPNG----RYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDVREPSWG  423 (427)
T ss_pred             EEEEEEECCCCCeEEc---cCC-CCccCceECCCC----CEEEEEEecCCCEEEEEEECCCCceEEeecCCCCCCCCccC
Confidence            2 89999988875442   222 234678999999    5555544 333333332  2221   122234566777777


Q ss_pred             eC
Q psy11524        301 SD  302 (323)
Q Consensus       301 ~~  302 (323)
                      |-
T Consensus       424 p~  425 (427)
T PRK02889        424 PF  425 (427)
T ss_pred             CC
Confidence            63

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=4.2e-17  Score=141.00  Aligned_cols=214  Identities=18%  Similarity=0.162  Sum_probs=143.4

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCC--eEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEE-EEcCCCceEeeeEEeC
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKS--LVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLIL-SGGEDCKYKASFVWDT  154 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~--~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~i~v~d~  154 (323)
                      .+...+.+++|+|||+.|++++...  ..|++|+..+. ...+....+...+++|+|||+.|+ +.+.+|.- +|++||+
T Consensus       201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~-~Iy~~d~  279 (433)
T PRK04922        201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNP-EIYVMDL  279 (433)
T ss_pred             cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCc-eEEEEEC
Confidence            4667899999999999999887443  46999998765 444555555566889999998775 44555541 2339999


Q ss_pred             CCCeeeEeecCCCceeEEEEecCCCEEEEEeC--C--eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecC---
Q psy11524        155 DGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY--N--TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN---  227 (323)
Q Consensus       155 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---  227 (323)
                      .+.....+..+......++|+|||+.|++.+.  +  .|+++|+.+.....+.........++|+|+|++|+..+.+   
T Consensus       280 ~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~  359 (433)
T PRK04922        280 GSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQ  359 (433)
T ss_pred             CCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCc
Confidence            87777777766666678999999999988875  2  5788887654443333233445578999999999876532   


Q ss_pred             c-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCC-CC--eEEEecccc---cCCCCccceeEEEEe
Q psy11524        228 V-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKN-RD--LYLSMWSHS---LDKPDTGSVYDLVWS  300 (323)
Q Consensus       228 ~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~-~~--~~~~~~~~~---~~~~~~~~v~~~~~s  300 (323)
                      . |.+||+.+++...   +.. ......+.|+|+|    +.|...... +.  +.+++....   ....+.+.+..++|+
T Consensus       360 ~~I~v~d~~~g~~~~---Lt~-~~~~~~p~~spdG----~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g~~~~p~ws  431 (433)
T PRK04922        360 YRIAVMDLSTGSVRT---LTP-GSLDESPSFAPNG----SMVLYATREGGRGVLAAVSTDGRVRQRLVSADGEVREPAWS  431 (433)
T ss_pred             eeEEEEECCCCCeEE---CCC-CCCCCCceECCCC----CEEEEEEecCCceEEEEEECCCCceEEcccCCCCCCCCccC
Confidence            2 8999998877653   232 2245567999999    555554432 22  344444332   112234556667776


Q ss_pred             e
Q psy11524        301 S  301 (323)
Q Consensus       301 ~  301 (323)
                      |
T Consensus       432 p  432 (433)
T PRK04922        432 P  432 (433)
T ss_pred             C
Confidence            5

>KOG1009|consensus

Probab=99.79  E-value=1.3e-17  Score=132.69  Aligned_cols=144  Identities=18%  Similarity=0.270  Sum_probs=113.4

Q ss_pred             cceeEeeEeccCCcceeeeeeccccccccceee-----------------ecC-CCCCEEEEEEcCCCCeEEEEeeCCeE
Q psy11524         44 DGTVINYPISPYISVLHSYAASHSWPQALSLCR-----------------TLN-VSPPVYSAAWSPDSNKVLLTQAKSLV  105 (323)
Q Consensus        44 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~  105 (323)
                      ..+|+++.|.++..   ..++++.-|...++|+                 .|. |...|+++.|+|+|..||+|+++ |.
T Consensus        13 ~~pv~s~dfq~n~~---~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~-g~   88 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSL---NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG-GE   88 (434)
T ss_pred             CCceEEEEeccCcc---cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCC-ce
Confidence            45788899988763   2555655444444443                 232 88999999999999999988665 79


Q ss_pred             EEEeCCC--------C-----c-----eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCC
Q psy11524        106 IKPLSPN--------N-----K-----ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHD  166 (323)
Q Consensus       106 v~~~~~~--------~-----~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~  166 (323)
                      +.+|...        +     +     .+.+.+|...|..++|+||+.++++++.|..++   +||+. ++....+..|.
T Consensus        89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~---l~Dv~~G~l~~~~~dh~  165 (434)
T KOG1009|consen   89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVR---LWDVHAGQLLAILDDHE  165 (434)
T ss_pred             EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEE---EEEeccceeEeeccccc
Confidence            9999765        2     1     334567999999999999999999999999999   99995 77788888899


Q ss_pred             CceeEEEEecCCCEEEEEeCC-eEEEEeC
Q psy11524        167 HPISSLAWAPGGDMFAVGSYN-TLRLCDK  194 (323)
Q Consensus       167 ~~v~~~~~~p~~~~l~~~~~~-~i~i~d~  194 (323)
                      ..+..++|.|-++++++-+.+ ..+.+.+
T Consensus       166 ~yvqgvawDpl~qyv~s~s~dr~~~~~~~  194 (434)
T KOG1009|consen  166 HYVQGVAWDPLNQYVASKSSDRHPEGFSA  194 (434)
T ss_pred             cccceeecchhhhhhhhhccCcccceeee
Confidence            999999999988888887765 4555553

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=2e-16  Score=136.87  Aligned_cols=209  Identities=13%  Similarity=0.085  Sum_probs=143.3

Q ss_pred             eEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEE
Q psy11524        104 LVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFA  182 (323)
Q Consensus       104 ~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  182 (323)
                      ..|++||..+. .+.+..+...+.+++|+|||+.|+..+.++.-..|++||+.+.....+....+....++|+|||+.++
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~  263 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA  263 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence            46889998665 66777788889999999999999988754322233499997666566655555666889999999876


Q ss_pred             EE-eC-C--eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEec-Cc---EEEEEcCCCceeeeecCCCCccceEE
Q psy11524        183 VG-SY-N--TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACA-NV---IHIFDISSSSSSNVTAPLSHSHEITQ  254 (323)
Q Consensus       183 ~~-~~-~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~---i~iwd~~~~~~~~~~~~~~~~~~v~~  254 (323)
                      .. +. +  .|++||+.+.....+..+......++|+|||++|+..+. ++   |+++|+.+++....   .........
T Consensus       264 ~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l---t~~g~~~~~  340 (433)
T PRK04922        264 LTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL---TFQGNYNAR  340 (433)
T ss_pred             EEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe---ecCCCCccC
Confidence            54 33 3  799999987666655555555678899999999888774 33   67777777664432   222234457


Q ss_pred             EEEccCCCCccceEEEEeCCC---CeEEEecccc---cCCCCccceeEEEEeeCCCeeEeeecC---CeEEEEEe
Q psy11524        255 LAVNQTGSLQERHVAFIDKNR---DLYLSMWSHS---LDKPDTGSVYDLVWSSDATQIAGACAN---GSLLLGTI  320 (323)
Q Consensus       255 ~~~~p~g~~~d~~l~~~~~~~---~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~d---g~i~~~~l  320 (323)
                      ++|+|+|    +.|+....++   .+.+|++...   ... +......++|+|||++|+..+.+   +.+.++++
T Consensus       341 ~~~SpDG----~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~  410 (433)
T PRK04922        341 ASVSPDG----KKIAMVHGSGGQYRIAVMDLSTGSVRTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVST  410 (433)
T ss_pred             EEECCCC----CEEEEEECCCCceeEEEEECCCCCeEECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence            8999999    6776655433   3667776543   111 12245578999999988766553   34555544

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=2.9e-16  Score=135.37  Aligned_cols=202  Identities=16%  Similarity=0.161  Sum_probs=135.5

Q ss_pred             eEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEE
Q psy11524        104 LVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFA  182 (323)
Q Consensus       104 ~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  182 (323)
                      ..|+++|..+. ...+..+...+.+.+|+|||+.|+..+.++.-..|++||+.+.....+....+.....+|+|||+.|+
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la  255 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA  255 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence            46888888665 56667788889999999999999887754322234499997666556655556677899999999887


Q ss_pred             EE-eC-C--eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEec-Cc-EEEE--EcCCCceeeeecCCCCccceEE
Q psy11524        183 VG-SY-N--TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACA-NV-IHIF--DISSSSSSNVTAPLSHSHEITQ  254 (323)
Q Consensus       183 ~~-~~-~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~-i~iw--d~~~~~~~~~~~~~~~~~~v~~  254 (323)
                      .. +. +  .|+++|+.+.....+..+........|+|||++|+..+. ++ ..+|  +..+++....   .........
T Consensus       256 ~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l---t~~g~~~~~  332 (427)
T PRK02889        256 VALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV---TFTGSYNTS  332 (427)
T ss_pred             EEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE---ecCCCCcCc
Confidence            54 33 3  466667765555555555556677899999999887665 34 5555  5455543332   112233446


Q ss_pred             EEEccCCCCccceEEEEeCCC---CeEEEecccc---cCCCCccceeEEEEeeCCCeeEeeecCC
Q psy11524        255 LAVNQTGSLQERHVAFIDKNR---DLYLSMWSHS---LDKPDTGSVYDLVWSSDATQIAGACANG  313 (323)
Q Consensus       255 ~~~~p~g~~~d~~l~~~~~~~---~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~dg  313 (323)
                      .+|+|+|    +.|+....++   .+.+|++...   .... ......+.|+|||+.|+.++.++
T Consensus       333 ~~~SpDG----~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        333 PRISPDG----KLLAYISRVGGAFKLYVQDLATGQVTALTD-TTRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             eEECCCC----CEEEEEEccCCcEEEEEEECCCCCeEEccC-CCCccCceECCCCCEEEEEEecC
Confidence            7899999    6776655443   3667776543   1111 22346789999999888766554

>KOG2394|consensus

Probab=99.78  E-value=9.9e-18  Score=137.85  Aligned_cols=163  Identities=15%  Similarity=0.156  Sum_probs=120.7

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEeeccCCCeEEEEE--CCCCCEEEEEcCCCceEeeeEEeCCCC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAW--CSSTDLILSGGEDCKYKASFVWDTDGR  157 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~~i~v~d~~~~  157 (323)
                      ....|+|+.|-|.++.++..+...|.+++++..        +....+...|  .+++..++....-+        ..+..
T Consensus       218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~--------~~~~~t~p~~~~~k~~~~f~i~t~ks--------k~~rN  281 (636)
T KOG2394|consen  218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE--------IVCGATAPSYQALKDGDQFAILTSKS--------KKTRN  281 (636)
T ss_pred             cccceEEEEEEeCCCceEEEEEecCceEEeecc--------ccccCCCCcccccCCCCeeEEeeeec--------cccCC
Confidence            347889999988777666666666788888762        1111122222  23455554321111        11224


Q ss_pred             eeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCee-eecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEc
Q psy11524        158 QLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSH-SLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDI  234 (323)
Q Consensus       158 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~  234 (323)
                      ++..+.-..+.|..++|+|||++||+.+.| .++|||...+++ -.++..-+...|++|||||+||++|++|. |.||.+
T Consensus       282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf  361 (636)
T KOG2394|consen  282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF  361 (636)
T ss_pred             ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence            455555556689999999999999999997 999999886644 36666778899999999999999999999 999999


Q ss_pred             CCCceeeeecCCCCccceEEEEEccC
Q psy11524        235 SSSSSSNVTAPLSHSHEITQLAVNQT  260 (323)
Q Consensus       235 ~~~~~~~~~~~~~~~~~v~~~~~~p~  260 (323)
                      ..++.+..  -++|..+|..++|.|-
T Consensus       362 ~erRVVAR--GqGHkSWVs~VaFDpy  385 (636)
T KOG2394|consen  362 EERRVVAR--GQGHKSWVSVVAFDPY  385 (636)
T ss_pred             ccceEEEe--ccccccceeeEeeccc
Confidence            99999988  7999999999999974

>KOG1034|consensus

Probab=99.77  E-value=6.4e-17  Score=125.47  Aligned_cols=233  Identities=11%  Similarity=0.121  Sum_probs=159.2

Q ss_pred             CCCCEEEEEEcC-----CCCeEEEEeeCCeEEEEeCCCCceeEe-----eccCCCeEEEEECCC----CCEEEEEcCCCc
Q psy11524         80 VSPPVYSAAWSP-----DSNKVLLTQAKSLVIKPLSPNNKATKW-----QAHDGLILKVAWCSS----TDLILSGGEDCK  145 (323)
Q Consensus        80 ~~~~v~~~~~sp-----~~~~l~~~~~~~~~v~~~~~~~~~~~~-----~~~~~~v~~~~~~~~----~~~l~~~~~d~~  145 (323)
                      |..+|..++|++     .-+.+++++.+...++-.......+.+     ..|......++|+-|    ..++|+++.-|.
T Consensus        37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~Gv  116 (385)
T KOG1034|consen   37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGV  116 (385)
T ss_pred             CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeE
Confidence            789999999985     234556665554444444444332322     236677788888764    347888999999


Q ss_pred             eEeeeEEeCC-CCeeeEeecCCCceeEEEEecC-CCEEEEEeCC-eEEEEeCCCC-eeeec---CCCCccEEEEEEcCCC
Q psy11524        146 YKASFVWDTD-GRQLYSSLTHDHPISSLAWAPG-GDMFAVGSYN-TLRLCDKVGW-SHSLD---KPDTGSVYDLVWSNDA  218 (323)
Q Consensus       146 i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~~-~i~i~d~~~~-~~~~~---~~~~~~v~~~~~~~~~  218 (323)
                      |+   |.|+. ++....+.+|...|+.+.+.|+ .+++++++.| .|++|++++. ++..+   .+|.+.|.++.|+++|
T Consensus       117 Ir---Vid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g  193 (385)
T KOG1034|consen  117 IR---VIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG  193 (385)
T ss_pred             EE---EEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC
Confidence            99   99995 7777889999999999999996 5788899998 9999999865 44443   4688999999999999


Q ss_pred             CEEEEEecCc-EEEEEcCCCceeeeec----C----------------------CCCccceEEEEEccCCCCccceEEEE
Q psy11524        219 TQIAGACANV-IHIFDISSSSSSNVTA----P----------------------LSHSHEITQLAVNQTGSLQERHVAFI  271 (323)
Q Consensus       219 ~~l~~~~~d~-i~iwd~~~~~~~~~~~----~----------------------~~~~~~v~~~~~~p~g~~~d~~l~~~  271 (323)
                      .+|++++-|. |++|++...+....+.    +                      ..|...|-++.|--      ..+..-
T Consensus       194 d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g------d~ilSk  267 (385)
T KOG1034|consen  194 DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG------DFILSK  267 (385)
T ss_pred             CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh------hheeec
Confidence            9999999999 9999987432111100    0                      01222222222221      344444


Q ss_pred             eCCCCeEEEecccc------------------cCCCCcccee--EEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        272 DKNRDLYLSMWSHS------------------LDKPDTGSVY--DLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       272 ~~~~~~~~~~~~~~------------------~~~~~~~~v~--~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +.++.+..|.....                  .+......++  ..+|.|-++.||.|...|.|++|+|.
T Consensus       268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~  337 (385)
T KOG1034|consen  268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLD  337 (385)
T ss_pred             ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECC
Confidence            55555555554211                  1122233444  44566678999999999999999984

>KOG0771|consensus

Probab=99.76  E-value=2.7e-17  Score=131.54  Aligned_cols=189  Identities=17%  Similarity=0.257  Sum_probs=146.8

Q ss_pred             EEEEECCCCCEEEEEcCCCceEeeeEEe-CCCCeeeEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCC-eeeecC
Q psy11524        126 LKVAWCSSTDLILSGGEDCKYKASFVWD-TDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGW-SHSLDK  203 (323)
Q Consensus       126 ~~~~~~~~~~~l~~~~~d~~i~~i~v~d-~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~-~~~~~~  203 (323)
                      ..++|+++|..+++++.||++|   +|+ .+.........|...|.++.|+|||+.|++.+.+..+||+.+.. .+....
T Consensus       148 k~vaf~~~gs~latgg~dg~lR---v~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLR---VWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEE---EEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcC
Confidence            6899999999999999999999   999 46666777778899999999999999999999999999998744 333322


Q ss_pred             --CCCccEEEEEEcCCC---C-EEEEEecC-c-EEEEEcCCCce---eeeecCCCCccceEEEEEccCCCCccceEEEEe
Q psy11524        204 --PDTGSVYDLVWSNDA---T-QIAGACAN-V-IHIFDISSSSS---SNVTAPLSHSHEITQLAVNQTGSLQERHVAFID  272 (323)
Q Consensus       204 --~~~~~v~~~~~~~~~---~-~l~~~~~d-~-i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~  272 (323)
                        ........+.|+.|+   . ++++.-.+ + |+.||+...+-   ++..+.......|++++.+++|    +.++++.
T Consensus       225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG----kf~AlGT  300 (398)
T KOG0771|consen  225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG----KFLALGT  300 (398)
T ss_pred             CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC----cEEEEec
Confidence              233346677787766   2 33333333 3 77777543221   1111123344589999999999    8999999


Q ss_pred             CCCCeEEEecccc-----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        273 KNRDLYLSMWSHS-----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       273 ~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      .+|.+-+++....     +.+.|..-|+.+.|+||.+++++.+.|..+.+..|.
T Consensus       301 ~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  301 MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            9999999888775     667789999999999999999999999999888763

>KOG0642|consensus

Probab=99.76  E-value=9.3e-18  Score=138.67  Aligned_cols=236  Identities=16%  Similarity=0.128  Sum_probs=168.4

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc----------eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEe
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK----------ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKA  148 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  148 (323)
                      .|...|+.+.|.|....|++++.+ +.+.+|++...          +.++.+|.++|.|++..+++.++++|+.||+|+ 
T Consensus       292 s~~d~ir~l~~~~sep~lit~sed-~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~-  369 (577)
T KOG0642|consen  292 SHDDCIRALAFHPSEPVLITASED-GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIR-  369 (577)
T ss_pred             cchhhhhhhhcCCCCCeEEEeccc-cchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceee-
Confidence            378899999999999999999888 69999998321          668899999999999999999999999999999 


Q ss_pred             eeEEeCC-----------CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecCCC--CccEEEEEE
Q psy11524        149 SFVWDTD-----------GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDKPD--TGSVYDLVW  214 (323)
Q Consensus       149 i~v~d~~-----------~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~--~~~v~~~~~  214 (323)
                        .|++.           ......+.+|...++.+++|+....|++++.| ++++|+.......++...  .+...++.+
T Consensus       370 --~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~  447 (577)
T KOG0642|consen  370 --CWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR  447 (577)
T ss_pred             --eeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee
Confidence              99651           12345678899999999999988889999886 999999765433222221  223445555


Q ss_pred             cCCC-CEEEEEecCc-EEEEEcCCCceeeeecCCC-----CccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc--
Q psy11524        215 SNDA-TQIAGACANV-IHIFDISSSSSSNVTAPLS-----HSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS--  285 (323)
Q Consensus       215 ~~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~--  285 (323)
                      -... ...++...-+ -.++++..+..+..+....     ....+..+.++|.+    ......-.+..+.+++...+  
T Consensus       448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~----~~~~~~hed~~Ir~~dn~~~~~  523 (577)
T KOG0642|consen  448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA----DITFTAHEDRSIRFFDNKTGKI  523 (577)
T ss_pred             ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC----CeeEecccCCceeccccccccc
Confidence            4322 1222222223 3444444444333211111     11245667788876    55566666777777766654  


Q ss_pred             --cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        286 --LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       286 --~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                        ....|...++++++.|+|.+|++++.|+.+++|++..
T Consensus       524 l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  524 LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             chheeeccceecceeecCCCceEEeecCCceeehhhccc
Confidence              2233678999999999999999999999999999843

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.76  E-value=9.3e-15  Score=126.31  Aligned_cols=274  Identities=25%  Similarity=0.335  Sum_probs=199.3

Q ss_pred             EeecccceeEeeEeccCCcceeeeeecc---ccccccc--eeeecCC-C-CCEEEEEE-cCCCC-eEEEEeeCCeEEEEe
Q psy11524         39 TIRRYDGTVINYPISPYISVLHSYAASH---SWPQALS--LCRTLNV-S-PPVYSAAW-SPDSN-KVLLTQAKSLVIKPL  109 (323)
Q Consensus        39 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~-~-~~v~~~~~-sp~~~-~l~~~~~~~~~v~~~  109 (323)
                      ....|...+..+.+.+.+..+.....++   .|+....  ....+.. . ..+..+.+ ++++. .++..+..++.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            4668899999999999986554333222   2442222  2333332 2 36777777 88888 444444535799999


Q ss_pred             CCCC--c-eeEeeccCCCeEEEEECCCCCEEEEEcC-CCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCC-EEEE
Q psy11524        110 SPNN--K-ATKWQAHDGLILKVAWCSSTDLILSGGE-DCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGD-MFAV  183 (323)
Q Consensus       110 ~~~~--~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~-~l~~  183 (323)
                      +...  . ...+..|...|..++|+|++..+++++. ++.++   +|++. +..+..+..|...+.+++|+|++. .+++
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  216 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK---LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS  216 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceE---EEEcCCCceEEeeccCCCceEEEEEcCCcceEEEE
Confidence            9875  3 6678899999999999999998888886 99999   99997 577777888999999999999998 4444


Q ss_pred             EeCC-eEEEEeCCC-Ceee-ecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCce-eeeecCCCCccceEEEEEc
Q psy11524        184 GSYN-TLRLCDKVG-WSHS-LDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSS-SNVTAPLSHSHEITQLAVN  258 (323)
Q Consensus       184 ~~~~-~i~i~d~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~  258 (323)
                      ++.+ .+++||... .... ....|.... ...|+|++.++++++.|+ +++|+.+.... ...  ...|...+.++.|+
T Consensus       217 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~  293 (466)
T COG2319         217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT--LSGHSSSVLSVAFS  293 (466)
T ss_pred             ecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEE--EecCCccEEEEEEC
Confidence            3555 899999773 3444 466676665 448999998889999999 99999987665 444  35678899999999


Q ss_pred             cCCCCccceEEEEeCCCCeEEEecccc----cC--CCCccceeEEEEeeCCCeeEee-ecCCeEEEEEeec
Q psy11524        259 QTGSLQERHVAFIDKNRDLYLSMWSHS----LD--KPDTGSVYDLVWSSDATQIAGA-CANGSLLLGTIIQ  322 (323)
Q Consensus       259 p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~--~~~~~~v~~~~~s~~g~~l~s~-~~dg~i~~~~l~~  322 (323)
                      |++    ..+.....++.+.+|+....    ..  ..|...+..+.|.+++..++.+ ..|+.+.+|++..
T Consensus       294 ~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  360 (466)
T COG2319         294 PDG----KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT  360 (466)
T ss_pred             CCC----CEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCC
Confidence            976    55555666666777766543    11  2456679999994333455555 6888899888643

>KOG1007|consensus

Probab=99.76  E-value=3.7e-16  Score=119.30  Aligned_cols=236  Identities=14%  Similarity=0.207  Sum_probs=163.2

Q ss_pred             eEeecccceeEeeEeccCC-cceeeeeecc----------ccc----------cccceeeecC--CCCCEEEEEEcCCCC
Q psy11524         38 LTIRRYDGTVINYPISPYI-SVLHSYAASH----------SWP----------QALSLCRTLN--VSPPVYSAAWSPDSN   94 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~----------~~~----------~~~~~~~~~~--~~~~v~~~~~sp~~~   94 (323)
                      ..+..|.+.|+.++-+|.. ..+++.....          .|.          .+.++...+.  +-+.|.|+.|.|++.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            4567788999999999854 4444443311          242          1123333343  456999999999999


Q ss_pred             eEEEEeeCCeEEEEeCCCCc---eeEe-----eccCCCeEEEEECC--CCCEEEEEcCCCceEeeeEEeCCC-CeeeE-e
Q psy11524         95 KVLLTQAKSLVIKPLSPNNK---ATKW-----QAHDGLILKVAWCS--STDLILSGGEDCKYKASFVWDTDG-RQLYS-S  162 (323)
Q Consensus        95 ~l~~~~~~~~~v~~~~~~~~---~~~~-----~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~i~v~d~~~-~~~~~-~  162 (323)
                      .+++.. + ..|.+|++...   ...+     ..+....++-+|+|  ||+.+++.+ |+++.   .||++. ++... -
T Consensus       137 klasm~-d-n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~---~~D~RT~~~~~sI~  210 (370)
T KOG1007|consen  137 KLASMD-D-NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQ---FWDLRTMKKNNSIE  210 (370)
T ss_pred             eeEEec-c-CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEE---EEEccchhhhcchh
Confidence            998765 3 37888887654   1122     12455678889999  678888765 88999   999963 33333 3


Q ss_pred             ecCCCceeEEEEecCCCE-EEEEeCC-eEEEEeCCC--CeeeecCCCCccEEEEEEcC-CCCEEEEEecCc-EEEEEcCC
Q psy11524        163 LTHDHPISSLAWAPGGDM-FAVGSYN-TLRLCDKVG--WSHSLDKPDTGSVYDLVWSN-DATQIAGACANV-IHIFDISS  236 (323)
Q Consensus       163 ~~~~~~v~~~~~~p~~~~-l~~~~~~-~i~i~d~~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~-i~iwd~~~  236 (323)
                      ..|...|.++.|+|+.++ |+++++| .|++||.+.  .++..+.+|..++.++.|+| ..++|++++.|. |.+|...+
T Consensus       211 dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  211 DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence            567788999999998665 6677776 999999874  36667888999999999999 455788899999 99985321


Q ss_pred             C------------------------c-----eeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        237 S------------------------S-----SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       237 ~------------------------~-----~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      -                        +     .+.+  +..|...|++++|+...+   =.++.-+.||++.+-.+..
T Consensus       291 vSSE~qi~~~~dese~e~~dseer~kpL~dg~l~t--ydehEDSVY~~aWSsadP---WiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  291 VSSEQQIEFEDDESESEDEDSEERVKPLQDGQLET--YDEHEDSVYALAWSSADP---WIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             cccccccccccccccCcchhhHHhccccccccccc--ccccccceEEEeeccCCC---eeEEEeccCceEEeecCCh
Confidence            0                        0     1223  466888899999987652   4555667777776655443

>KOG0771|consensus

Probab=99.76  E-value=3.5e-17  Score=130.83  Aligned_cols=188  Identities=18%  Similarity=0.217  Sum_probs=140.8

Q ss_pred             EEEEEcCCCCeEEEEeeCCeEEEEeCC-CCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeE
Q psy11524         85 YSAAWSPDSNKVLLTQAKSLVIKPLSP-NNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYS  161 (323)
Q Consensus        85 ~~~~~sp~~~~l~~~~~~~~~v~~~~~-~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~  161 (323)
                      .+++|+++|..+++++.| |.+++|+- ... +.....|.+.|.++.|+|||+.|++.+.| ..+   ||+.+ +..+..
T Consensus       148 k~vaf~~~gs~latgg~d-g~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~---VW~~~~g~~~a~  222 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTD-GTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SAR---VWSVNTGAALAR  222 (398)
T ss_pred             eEEEEcCCCCEeeecccc-ceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceE---EEEeccCchhhh
Confidence            789999999999999888 79999993 333 56677899999999999999999999999 899   99996 544444


Q ss_pred             ee--cCCCceeEEEEecCC---CEEEEEeC--C-eEEEEeCCCC------eeeecCCCCccEEEEEEcCCCCEEEEEecC
Q psy11524        162 SL--THDHPISSLAWAPGG---DMFAVGSY--N-TLRLCDKVGW------SHSLDKPDTGSVYDLVWSNDATQIAGACAN  227 (323)
Q Consensus       162 ~~--~~~~~v~~~~~~p~~---~~l~~~~~--~-~i~i~d~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  227 (323)
                      ..  ..+.....+.|+.|+   .+++.+..  . .|+.||+..+      ...........|.+++.+++|++++.|+.+
T Consensus       223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d  302 (398)
T KOG0771|consen  223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD  302 (398)
T ss_pred             cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence            33  233456778898876   34333333  3 7888776422      112222234579999999999999999999


Q ss_pred             c-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEec
Q psy11524        228 V-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMW  282 (323)
Q Consensus       228 ~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~  282 (323)
                      | |.|++..+.+.++.. ...|...|+.+.|+|+.    +.+..-+.+....+..+
T Consensus       303 GsVai~~~~~lq~~~~v-k~aH~~~VT~ltF~Pds----r~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRLQYV-KEAHLGFVTGLTFSPDS----RYLASVSSDNEAAVTKL  353 (398)
T ss_pred             CcEEEEEeceeeeeEee-hhhheeeeeeEEEcCCc----CcccccccCCceeEEEE
Confidence            9 999999988877653 56799999999999998    55555444444444433

>KOG2110|consensus

Probab=99.76  E-value=2.6e-15  Score=118.44  Aligned_cols=231  Identities=13%  Similarity=0.132  Sum_probs=161.0

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeee
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLY  160 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~  160 (323)
                      ...+..+.|+.+...|..|+.++-.++--+..++..........|..+-|+  ..++|..+.+.. +.+.+++.+.+...
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qp-r~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQP-RKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCC-ceEEEEEcccCceE
Confidence            345677779999988888877753333332222222222233345556666  457776666433 22338888644443


Q ss_pred             EeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCeee-e---cCCCCccEEEEEEcCCCCEEEEEec--Cc-EEEEE
Q psy11524        161 SSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHS-L---DKPDTGSVYDLVWSNDATQIAGACA--NV-IHIFD  233 (323)
Q Consensus       161 ~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~~~-~---~~~~~~~v~~~~~~~~~~~l~~~~~--d~-i~iwd  233 (323)
                      .-.....+|.++.++.  +.|+++-.+.|+|||++..+.. .   ..++...+..+++++.+.+|+.-+.  .| |.+||
T Consensus        82 Ce~~fpt~IL~VrmNr--~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d  159 (391)
T KOG2110|consen   82 CEIFFPTSILAVRMNR--KRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFD  159 (391)
T ss_pred             EEEecCCceEEEEEcc--ceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEE
Confidence            3334677899999974  4677777778999999875433 2   2234555777777777778886443  45 99999


Q ss_pred             cCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCC-eEEEecccc-----cCCC-CccceeEEEEeeCCCee
Q psy11524        234 ISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRD-LYLSMWSHS-----LDKP-DTGSVYDLVWSSDATQI  306 (323)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~-~~~~~~~~~-----~~~~-~~~~v~~~~~s~~g~~l  306 (323)
                      ..+-+++..  +..|.+++.+++|+|+|    ..|+..+..|. ++++.+..+     +.++ -...|.+++|+|++++|
T Consensus       160 ~~nl~~v~~--I~aH~~~lAalafs~~G----~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L  233 (391)
T KOG2110|consen  160 TINLQPVNT--INAHKGPLAALAFSPDG----TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL  233 (391)
T ss_pred             cccceeeeE--EEecCCceeEEEECCCC----CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence            999998888  68999999999999999    88888888776 456666554     1111 13578999999999999


Q ss_pred             EeeecCCeEEEEEeec
Q psy11524        307 AGACANGSLLLGTIIQ  322 (323)
Q Consensus       307 ~s~~~dg~i~~~~l~~  322 (323)
                      ++.++.++|++++|.+
T Consensus       234 ~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  234 AASSNTETVHIFKLEK  249 (391)
T ss_pred             EEecCCCeEEEEEecc
Confidence            9999999999999864

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.75  E-value=5.9e-15  Score=127.57  Aligned_cols=233  Identities=22%  Similarity=0.294  Sum_probs=184.5

Q ss_pred             cCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc---eeEeeccC-CCeEEEEE-CCCCC-EEEEEcC-CCceEeee
Q psy11524         78 LNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK---ATKWQAHD-GLILKVAW-CSSTD-LILSGGE-DCKYKASF  150 (323)
Q Consensus        78 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~---~~~~~~~~-~~v~~~~~-~~~~~-~l~~~~~-d~~i~~i~  150 (323)
                      ..|...+.++.+.+.+..++.++.+ +.+.+|+....   ...+.... ..+..+.+ ++++. .++..+. |+.+.   
T Consensus        62 ~~~~~~i~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---  137 (466)
T COG2319          62 RGHEDSITSIAFSPDGELLLSGSSD-GTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK---  137 (466)
T ss_pred             eeccceEEEEEECCCCcEEEEecCC-CcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE---
Confidence            4589999999999999999988755 58899987665   33444433 36777777 88887 5555444 89999   


Q ss_pred             EEeCCC--CeeeEeecCCCceeEEEEecCCCEEEEEeC-C-eEEEEeCCC-CeeeecCCCCccEEEEEEcCCCC-EEEEE
Q psy11524        151 VWDTDG--RQLYSSLTHDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDAT-QIAGA  224 (323)
Q Consensus       151 v~d~~~--~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~-~l~~~  224 (323)
                      +|+...  .....+..|...+..++|+|++..+++++. + .+++|+... ........|...+.+++|+|++. .++++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  217 (466)
T COG2319         138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG  217 (466)
T ss_pred             EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEe
Confidence            999975  778888999999999999999998888874 5 999999875 56667777899999999999998 55555


Q ss_pred             ecCc-EEEEEcCCCceee-eecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccccc-----CCCCccceeEE
Q psy11524        225 CANV-IHIFDISSSSSSN-VTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSL-----DKPDTGSVYDL  297 (323)
Q Consensus       225 ~~d~-i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~  297 (323)
                      +.|+ |++||...+.... .  +..|.... ...|+|++    ..+..+..++.+.+|+.....     ...|...+.++
T Consensus       218 ~~d~~i~~wd~~~~~~~~~~--~~~~~~~~-~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~  290 (466)
T COG2319         218 SSDGTIRLWDLSTGKLLRST--LSGHSDSV-VSSFSPDG----SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV  290 (466)
T ss_pred             cCCCcEEEEECCCCcEEeee--cCCCCcce-eEeECCCC----CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEE
Confidence            8889 9999988777776 4  56676664 33899997    577777888888888776531     13568899999


Q ss_pred             EEeeCCCeeEeeecCCeEEEEEee
Q psy11524        298 VWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       298 ~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      .|+|++..+++++.|+.+.+|++.
T Consensus       291 ~~~~~~~~~~~~~~d~~~~~~~~~  314 (466)
T COG2319         291 AFSPDGKLLASGSSDGTVRLWDLE  314 (466)
T ss_pred             EECCCCCEEEEeeCCCcEEEEEcC
Confidence            999999888889999889999763

>KOG1963|consensus

Probab=99.75  E-value=1.9e-15  Score=131.26  Aligned_cols=239  Identities=13%  Similarity=0.142  Sum_probs=177.2

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCC--c----eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEE
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN--K----ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVW  152 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~--~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~  152 (323)
                      .|.-.+++.++||.++++|++..+ |.|.+|...+  .    ...+.-|...|.+++|+++|.+|++|+..|.+.   +|
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~d-GrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv---~W  278 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSD-GRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLV---LW  278 (792)
T ss_pred             hhcccceeEEeccccceEEEeccC-CcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEE---EE
Confidence            477789999999999999987666 7999997554  1    556778999999999999999999999999999   99


Q ss_pred             eCCCCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeee----ecC--------CCCccEEEEEEcCCCC
Q psy11524        153 DTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHS----LDK--------PDTGSVYDLVWSNDAT  219 (323)
Q Consensus       153 d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~----~~~--------~~~~~v~~~~~~~~~~  219 (323)
                      .+..+...-+..-.++|..+.++||+.+.+....| .|.+.........    -+.        ...+-.+.++++|.-+
T Consensus       279 q~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~  358 (792)
T KOG1963|consen  279 QLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN  358 (792)
T ss_pred             eecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence            99766666677788899999999999998888886 8888876432211    111        1234467889999667


Q ss_pred             EEEEEecCc-EEEEEcCCCceeeeecCCC---------CccceEEEEEccCCC---------------CccceEEEEeCC
Q psy11524        220 QIAGACANV-IHIFDISSSSSSNVTAPLS---------HSHEITQLAVNQTGS---------------LQERHVAFIDKN  274 (323)
Q Consensus       220 ~l~~~~~d~-i~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~~p~g~---------------~~d~~l~~~~~~  274 (323)
                      .++..+..+ |.+||+-+.+.+..+....         +...++.++.+..|.               .....+++|-.+
T Consensus       359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n  438 (792)
T KOG1963|consen  359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN  438 (792)
T ss_pred             ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence            788888889 9999998776655421111         122455666666653               113456667666


Q ss_pred             CCeEEEecccccCCCCccceeEEEEeeC-CC-eeEeeecCCeEEEEEee
Q psy11524        275 RDLYLSMWSHSLDKPDTGSVYDLVWSSD-AT-QIAGACANGSLLLGTII  321 (323)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~-~l~s~~~dg~i~~~~l~  321 (323)
                      +...-|.+.+.+...|+..+....+.+. .. .+++++.||.+++|-+.
T Consensus       439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~  487 (792)
T KOG1963|consen  439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFT  487 (792)
T ss_pred             CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEe
Confidence            6666666666566677766666655543 33 78999999999999884

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.75  E-value=1.1e-15  Score=116.67  Aligned_cols=151  Identities=18%  Similarity=0.356  Sum_probs=108.9

Q ss_pred             EEEEEcCCCCeEEEEeeC-----------CeEEEEeCCCCc-eeEee-ccCCCeEEEEECCCCCEEEEE--cCCCceEee
Q psy11524         85 YSAAWSPDSNKVLLTQAK-----------SLVIKPLSPNNK-ATKWQ-AHDGLILKVAWCSSTDLILSG--GEDCKYKAS  149 (323)
Q Consensus        85 ~~~~~sp~~~~l~~~~~~-----------~~~v~~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~--~~d~~i~~i  149 (323)
                      ..+.|+|+|++|++-...           ...++..+..+. ...+. ...++|.+++|+|+|+.+|+.  ..++.|.  
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~--   86 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT--   86 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccE--
Confidence            467899999888765441           122444433333 33332 234579999999999987654  3567888  


Q ss_pred             eEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC----CeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEe
Q psy11524        150 FVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY----NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGAC  225 (323)
Q Consensus       150 ~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~----~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  225 (323)
                       +||++++.+..+.  ...+..+.|+|+|+++++++.    +.+.+||.+.........|. .+..++|+|+|+++++++
T Consensus        87 -lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~  162 (194)
T PF08662_consen   87 -LYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATAT  162 (194)
T ss_pred             -EEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEE
Confidence             9999977777764  456789999999999999874    36999999865544443343 478999999999999886


Q ss_pred             c------Cc-EEEEEcCCCceeee
Q psy11524        226 A------NV-IHIFDISSSSSSNV  242 (323)
Q Consensus       226 ~------d~-i~iwd~~~~~~~~~  242 (323)
                      .      |+ ++||+.. |+.+..
T Consensus       163 t~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  163 TSPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             eccceeccccEEEEEec-CeEeEe
Confidence            4      56 9999974 666554

>KOG0303|consensus

Probab=99.74  E-value=4.2e-16  Score=123.80  Aligned_cols=196  Identities=13%  Similarity=0.227  Sum_probs=145.5

Q ss_pred             CCCCCEEEEEEcCCCC-eEEEEeeCCeEEEEeCCCCc---------eeEeeccCCCeEEEEECCC-CCEEEEEcCCCceE
Q psy11524         79 NVSPPVYSAAWSPDSN-KVLLTQAKSLVIKPLSPNNK---------ATKWQAHDGLILKVAWCSS-TDLILSGGEDCKYK  147 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~-~l~~~~~~~~~v~~~~~~~~---------~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~  147 (323)
                      +|..+|..++|+|-+. .||+|++| ..|.+|+....         +..+.+|...|..++|+|. .+.|++++.|.+|.
T Consensus        79 GHt~~vLDi~w~PfnD~vIASgSeD-~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~  157 (472)
T KOG0303|consen   79 GHTAPVLDIDWCPFNDCVIASGSED-TKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVS  157 (472)
T ss_pred             CccccccccccCccCCceeecCCCC-ceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEE
Confidence            3999999999999655 45555555 69999986543         5678999999999999995 57899999999999


Q ss_pred             eeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCee-eecCCCCc-cEEEEEEcCCCCEEEE
Q psy11524        148 ASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSH-SLDKPDTG-SVYDLVWSNDATQIAG  223 (323)
Q Consensus       148 ~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~-~~~~~~~~-~v~~~~~~~~~~~l~~  223 (323)
                         +||+. ++.+.++. |...|.++.|+.||.+|++.+.| .|+|||.+...+ ....+|.+ ....+.|-.+|..+.+
T Consensus       158 ---iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT  233 (472)
T KOG0303|consen  158 ---IWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT  233 (472)
T ss_pred             ---EEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence               99995 66666766 99999999999999999999998 999999886543 34456655 4567778889985555


Q ss_pred             Eec---Cc-EEEEEcCCCc-eeeeecCCCCccceEEEEEccCCCCccceEEEE-eCCCCeEEEeccc
Q psy11524        224 ACA---NV-IHIFDISSSS-SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFI-DKNRDLYLSMWSH  284 (323)
Q Consensus       224 ~~~---d~-i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~-~~~~~~~~~~~~~  284 (323)
                      |..   +. +.+||..+-+ ++... -......|.-.-|.|+.    +.|.++ ..|+.++-+.+..
T Consensus       234 Gfsr~seRq~aLwdp~nl~eP~~~~-elDtSnGvl~PFyD~dt----~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  234 GFSRMSERQIALWDPNNLEEPIALQ-ELDTSNGVLLPFYDPDT----SIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             ccccccccceeccCcccccCcceeE-EeccCCceEEeeecCCC----CEEEEEecCCcceEEEEecC
Confidence            543   45 9999976533 22211 12334456656677876    666654 4567777666654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=2e-15  Score=130.65  Aligned_cols=214  Identities=15%  Similarity=0.115  Sum_probs=138.7

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCC--eEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEE-EcCCCceEeeeEEeC
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKS--LVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILS-GGEDCKYKASFVWDT  154 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~--~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~i~v~d~  154 (323)
                      .+...+.+..|||||++|++.+..+  ..|++++..+. ...+....+.....+|+|||+.|+. .+.++.. +|+++|+
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~-~Iy~~dl  293 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQP-EIYVVDI  293 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCe-EEEEEEC
Confidence            3566788999999999999886543  36888887655 3334433444557899999998765 4556653 3448898


Q ss_pred             CCCeeeEeecCCCceeEEEEecCCCEEEEEeC--C--eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecC-c-
Q psy11524        155 DGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY--N--TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN-V-  228 (323)
Q Consensus       155 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~-  228 (323)
                      ++.....+..+.......+|+|||+.++..+.  +  .|+++|+.+.....+..........+|+|||++|+..+.+ + 
T Consensus       294 ~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~  373 (448)
T PRK04792        294 ATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGK  373 (448)
T ss_pred             CCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCc
Confidence            87777777666666778999999999887765  2  6888888755443332222334567999999998876653 3 


Q ss_pred             --EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeC-CCC--eEEEecccc---cCCCCccceeEEEEe
Q psy11524        229 --IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDK-NRD--LYLSMWSHS---LDKPDTGSVYDLVWS  300 (323)
Q Consensus       229 --i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~-~~~--~~~~~~~~~---~~~~~~~~v~~~~~s  300 (323)
                        |.++|+.+++...   +... .......|+|+|    +.|+.... .+.  +++++....   ....+.+.+...+|+
T Consensus       374 ~~I~~~dl~~g~~~~---lt~~-~~d~~ps~spdG----~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~g~~~~p~Ws  445 (448)
T PRK04792        374 FNIARQDLETGAMQV---LTST-RLDESPSVAPNG----TMVIYSTTYQGKQVLAAVSIDGRFKARLPAGQGEVKSPAWS  445 (448)
T ss_pred             eEEEEEECCCCCeEE---ccCC-CCCCCceECCCC----CEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCccC
Confidence              5667888776533   2222 123356899998    55555433 333  333343322   222234556777777


Q ss_pred             e
Q psy11524        301 S  301 (323)
Q Consensus       301 ~  301 (323)
                      |
T Consensus       446 p  446 (448)
T PRK04792        446 P  446 (448)
T ss_pred             C
Confidence            6

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.73  E-value=7.8e-15  Score=127.04  Aligned_cols=200  Identities=15%  Similarity=0.119  Sum_probs=139.4

Q ss_pred             eEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCC---ceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCC
Q psy11524        104 LVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDC---KYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGD  179 (323)
Q Consensus       104 ~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~  179 (323)
                      ..|+++|..+. .+.+..+...+...+|+|||++|+.+..++   .|.   +||+.+.....+..+...+.+++|+|||+
T Consensus       170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~---v~d~~~g~~~~~~~~~~~~~~~~~spDg~  246 (417)
T TIGR02800       170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIY---VQDLATGQREKVASFPGMNGAPAFSPDGS  246 (417)
T ss_pred             ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEE---EEECCCCCEEEeecCCCCccceEECCCCC
Confidence            46888887644 666777777889999999999998876543   455   99997665555555666677899999999


Q ss_pred             EEEEEeC--C--eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecC-c---EEEEEcCCCceeeeecCCCCccc
Q psy11524        180 MFAVGSY--N--TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN-V---IHIFDISSSSSSNVTAPLSHSHE  251 (323)
Q Consensus       180 ~l~~~~~--~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~~~~~~~~  251 (323)
                      .|+....  +  .|++||+.+.....+..+........|+|+|++|+..+.. +   |+++|+.+++...   +..+...
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~---l~~~~~~  323 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR---LTFRGGY  323 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE---eecCCCC
Confidence            8775543  2  6999998866555555455555678999999988876643 2   7788887776543   3334456


Q ss_pred             eEEEEEccCCCCccceEEEEeCCC---CeEEEecccc---cCCCCccceeEEEEeeCCCeeEeeecCCe
Q psy11524        252 ITQLAVNQTGSLQERHVAFIDKNR---DLYLSMWSHS---LDKPDTGSVYDLVWSSDATQIAGACANGS  314 (323)
Q Consensus       252 v~~~~~~p~g~~~d~~l~~~~~~~---~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~dg~  314 (323)
                      ...+.|+|+|    ..++....++   .+.++++...   .... .......+|+|||+.|+..+.++.
T Consensus       324 ~~~~~~spdg----~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~~~~~p~~spdg~~l~~~~~~~~  387 (417)
T TIGR02800       324 NASPSWSPDG----DLIAFVHREGGGFNIAVMDLDGGGERVLTD-TGLDESPSFAPNGRMILYATTRGG  387 (417)
T ss_pred             ccCeEECCCC----CEEEEEEccCCceEEEEEeCCCCCeEEccC-CCCCCCceECCCCCEEEEEEeCCC
Confidence            6788999998    6666665544   4556665443   1111 123456789999998887776653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.73  E-value=1.7e-14  Score=120.89  Aligned_cols=219  Identities=9%  Similarity=0.053  Sum_probs=142.7

Q ss_pred             CeEEEEeeCCeEEEEeCCCC--c---eeEeeccCCCeEEEEECCCCCEEEEEc-CCCceEeeeEEeCC-CCeeeEe--ec
Q psy11524         94 NKVLLTQAKSLVIKPLSPNN--K---ATKWQAHDGLILKVAWCSSTDLILSGG-EDCKYKASFVWDTD-GRQLYSS--LT  164 (323)
Q Consensus        94 ~~l~~~~~~~~~v~~~~~~~--~---~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~i~v~d~~-~~~~~~~--~~  164 (323)
                      ++++++...++.|.+|+...  .   ...+ .+.+....++++|++++|++++ .++.|.   +|+++ ...+...  ..
T Consensus         2 ~~~y~~~~~~~~I~~~~~~~~g~l~~~~~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~---~~~~~~~g~l~~~~~~~   77 (330)
T PRK11028          2 QIVYIASPESQQIHVWNLNHEGALTLLQVV-DVPGQVQPMVISPDKRHLYVGVRPEFRVL---SYRIADDGALTFAAESP   77 (330)
T ss_pred             eEEEEEcCCCCCEEEEEECCCCceeeeeEE-ecCCCCccEEECCCCCEEEEEECCCCcEE---EEEECCCCceEEeeeec
Confidence            34555555557889998752  2   2223 3445677899999999887664 478888   99985 2222221  12


Q ss_pred             CCCceeEEEEecCCCEEEEEeC-C-eEEEEeCCCC--e--eeecCCCCccEEEEEEcCCCCEEEEEecC-c-EEEEEcCC
Q psy11524        165 HDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGW--S--HSLDKPDTGSVYDLVWSNDATQIAGACAN-V-IHIFDISS  236 (323)
Q Consensus       165 ~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~--~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~-i~iwd~~~  236 (323)
                      .......++|+|+++++++++. + .+.+|++...  .  ......+...+..++++|+|+++++++.+ + |.+||+.+
T Consensus        78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~  157 (330)
T PRK11028         78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD  157 (330)
T ss_pred             CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence            3345678999999999998886 4 9999998621  1  11111233456788999999998776654 6 99999976


Q ss_pred             Cceeee-----ecCCCCccceEEEEEccCCCCccceEEEEeC-CCCeEEEecccc-----------cCCC---CccceeE
Q psy11524        237 SSSSNV-----TAPLSHSHEITQLAVNQTGSLQERHVAFIDK-NRDLYLSMWSHS-----------LDKP---DTGSVYD  296 (323)
Q Consensus       237 ~~~~~~-----~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~-~~~~~~~~~~~~-----------~~~~---~~~~v~~  296 (323)
                      ...+..     ... ........++|+|+|    +++.+.+. ++.+.+|++...           ....   +......
T Consensus       158 ~g~l~~~~~~~~~~-~~g~~p~~~~~~pdg----~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  232 (330)
T PRK11028        158 DGHLVAQEPAEVTT-VEGAGPRHMVFHPNQ----QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAAD  232 (330)
T ss_pred             CCcccccCCCceec-CCCCCCceEEECCCC----CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcccee
Confidence            332211     001 123456789999999    67766665 666777776521           0000   1123346


Q ss_pred             EEEeeCCCeeEeee-cCCeEEEEEee
Q psy11524        297 LVWSSDATQIAGAC-ANGSLLLGTII  321 (323)
Q Consensus       297 ~~~s~~g~~l~s~~-~dg~i~~~~l~  321 (323)
                      +.++|+|++|+++. .++.|.+|++.
T Consensus       233 i~~~pdg~~lyv~~~~~~~I~v~~i~  258 (330)
T PRK11028        233 IHITPDGRHLYACDRTASLISVFSVS  258 (330)
T ss_pred             EEECCCCCEEEEecCCCCeEEEEEEe
Confidence            88999999988875 47899999873

>KOG1963|consensus

Probab=99.72  E-value=7.9e-15  Score=127.50  Aligned_cols=270  Identities=10%  Similarity=0.061  Sum_probs=182.5

Q ss_pred             cccceeEeeEeccCCcceeeeeeccccccccceeeecC-------------CCCCEEEEEEcCCCCeEEEEeeCCeEEEE
Q psy11524         42 RYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLN-------------VSPPVYSAAWSPDSNKVLLTQAKSLVIKP  108 (323)
Q Consensus        42 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~sp~~~~l~~~~~~~~~v~~  108 (323)
                      .|.-.+.+.+++|++..+    +++.-|+...+|+-++             |...|++++|+++|.+|++||.. +.+.+
T Consensus       203 ~Htf~~t~~~~spn~~~~----Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E-~VLv~  277 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYL----AAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGRE-GVLVL  277 (792)
T ss_pred             hhcccceeEEeccccceE----EEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccc-eEEEE
Confidence            456668889999999544    4444344444444332             78999999999999999999877 69999


Q ss_pred             eCCCCceeE-eeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEee-----------cCCCceeEEEEe
Q psy11524        109 LSPNNKATK-WQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSL-----------THDHPISSLAWA  175 (323)
Q Consensus       109 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~-----------~~~~~v~~~~~~  175 (323)
                      |...++.++ ++.-.++|..+.++||+.+.+....|..|.   +.... -.....+.           ...+-.+.++++
T Consensus       278 Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~---li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id  354 (792)
T KOG1963|consen  278 WQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIH---LIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID  354 (792)
T ss_pred             EeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEE---EEeccchhhhhhccCccCCCccccccccccceeEEEc
Confidence            998877444 566788999999999999999999999998   77652 11111111           123446778899


Q ss_pred             cCCCEEEEEeC-CeEEEEeCCCC-eee---e--cCC------CCccEEEEEEcCCCCEEEEEe--------cCc---EEE
Q psy11524        176 PGGDMFAVGSY-NTLRLCDKVGW-SHS---L--DKP------DTGSVYDLVWSNDATQIAGAC--------ANV---IHI  231 (323)
Q Consensus       176 p~~~~l~~~~~-~~i~i~d~~~~-~~~---~--~~~------~~~~v~~~~~~~~~~~l~~~~--------~d~---i~i  231 (323)
                      |.-+.++..+. +.|.+||+-+. .+.   .  ...      +.-.++.++.+..|.+++|.-        .|+   +++
T Consensus       355 pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKF  434 (792)
T KOG1963|consen  355 PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKF  434 (792)
T ss_pred             CCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEE
Confidence            96556666666 69999997532 111   1  111      223467788888899999864        344   889


Q ss_pred             EEcCCCc---eeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc--------------cCCCCccce
Q psy11524        232 FDISSSS---SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS--------------LDKPDTGSV  294 (323)
Q Consensus       232 wd~~~~~---~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~~v  294 (323)
                      |-.....   .+.+....+|...+...++.+..++  ......+.++.+++|.+...              +...|..++
T Consensus       435 W~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs--~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i  512 (792)
T KOG1963|consen  435 WQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRS--VRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPI  512 (792)
T ss_pred             EEEcCCcceeEEEEEEecCCCceeEEEEEecCccc--ceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcc
Confidence            9654332   2222113467666665555544321  14555667777777776321              333467899


Q ss_pred             eEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        295 YDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       295 ~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      .+++|+.||. +++++.|++|.+|+-.+
T Consensus       513 ~a~~fs~dGs-lla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  513 TALCFSQDGS-LLAVSFDDTITIWDYDT  539 (792)
T ss_pred             cchhhcCCCc-EEEEecCCEEEEecCCC
Confidence            9999999995 66667799999998643

>KOG2110|consensus

Probab=99.72  E-value=6.5e-14  Score=110.62  Aligned_cols=230  Identities=14%  Similarity=0.083  Sum_probs=161.4

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCC-eEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-C
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKS-LVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-G  156 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~-~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~  156 (323)
                      ....|--+-|+..  .+|..+.++ ..+++++...+ ...-......|.++.++.  ++|+++-++. |.   |||++ -
T Consensus        45 ~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr--~RLvV~Lee~-Iy---IydI~~M  116 (391)
T KOG2110|consen   45 EGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR--KRLVVCLEES-IY---IYDIKDM  116 (391)
T ss_pred             CCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEcc--ceEEEEEccc-EE---EEecccc
Confidence            4456666777744  555554433 35778777655 222223567889999874  4666665544 88   99996 4


Q ss_pred             CeeeEeec---CCCceeEEEEecCCCEEEEEeC---CeEEEEeCCC-CeeeecCCCCccEEEEEEcCCCCEEEEEecCc-
Q psy11524        157 RQLYSSLT---HDHPISSLAWAPGGDMFAVGSY---NTLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQIAGACANV-  228 (323)
Q Consensus       157 ~~~~~~~~---~~~~v~~~~~~p~~~~l~~~~~---~~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-  228 (323)
                      +.+.++..   +...+..+++++.+.+++.-+.   +.|.+||..+ .....+..|.+.+.+++|+|+|.+||++++.| 
T Consensus       117 klLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGT  196 (391)
T KOG2110|consen  117 KLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGT  196 (391)
T ss_pred             eeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCce
Confidence            55555543   4445666666666779887665   4899999764 45667778999999999999999999999999 


Q ss_pred             -EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccccc---------------------
Q psy11524        229 -IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSL---------------------  286 (323)
Q Consensus       229 -i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~~---------------------  286 (323)
                       ||++.+.+|+.+.+++--.....|.+++|+|++    ..|...+..+.+.++.++...                     
T Consensus       197 VIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds----~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~  272 (391)
T KOG2110|consen  197 VIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS----QFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAA  272 (391)
T ss_pred             EEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC----CeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhh
Confidence             999999999999884333345578999999999    777777777788887765420                     


Q ss_pred             --------------------CCCCccce-eEEEEe--eCCCeeEeeecCCeEEEEEee
Q psy11524        287 --------------------DKPDTGSV-YDLVWS--SDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       287 --------------------~~~~~~~v-~~~~~s--~~g~~l~s~~~dg~i~~~~l~  321 (323)
                                          .+...+.. ..+.+.  +..+++..++.||.++.|++.
T Consensus       273 ~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~  330 (391)
T KOG2110|consen  273 TSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLP  330 (391)
T ss_pred             hhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcC
Confidence                                00001111 233444  356788999999999999874

>KOG2139|consensus

Probab=99.72  E-value=3.8e-15  Score=117.28  Aligned_cols=221  Identities=15%  Similarity=0.247  Sum_probs=150.3

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEee-ccCCCeEEEEECCCC-CEEEEEcCCCceEeeeEEeCCC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQ-AHDGLILKVAWCSST-DLILSGGEDCKYKASFVWDTDG  156 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~i~v~d~~~  156 (323)
                      .+-.+..++|++.-..+|++..|+ .|++|+.... ...++ .....|.+++|.|.+ +.|+.|+..| |.   +|..+.
T Consensus        97 s~~dlr~~aWhqH~~~fava~ndd-vVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-Ic---iW~~s~  171 (445)
T KOG2139|consen   97 SEIDLRGVAWHQHIIAFAVATNDD-VVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-IC---IWSDSR  171 (445)
T ss_pred             hhcceeeEeechhhhhhhhhccCc-EEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eE---EEEcCc
Confidence            456788999999777778887776 9999987765 22332 234679999999964 5777777665 66   898731


Q ss_pred             -----Ce----------eeEeecCCCceeEEEEecCCCEEEEEeC-C-eEEEEeCCCC-eeeecCCCCccEEEEEEcCCC
Q psy11524        157 -----RQ----------LYSSLTHDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDA  218 (323)
Q Consensus       157 -----~~----------~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~  218 (323)
                           ..          +..-.+| .+|++++|++||..+++++. + .|.|||.... .+.......+.+.-+.|||||
T Consensus       172 tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdg  250 (445)
T KOG2139|consen  172 TLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDG  250 (445)
T ss_pred             ccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCC
Confidence                 11          1111223 57999999999999999998 4 9999998744 444443456678999999999


Q ss_pred             CEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEe----------------
Q psy11524        219 TQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSM----------------  281 (323)
Q Consensus       219 ~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~----------------  281 (323)
                      .+|+.++-|+ .++|..........  ..-..+.|....|+|+|.   ..+.....+..++-..                
T Consensus       251 d~lfaAt~davfrlw~e~q~wt~er--w~lgsgrvqtacWspcGs---fLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~  325 (445)
T KOG2139|consen  251 DVLFAATCDAVFRLWQENQSWTKER--WILGSGRVQTACWSPCGS---FLLFACSGSPRLYSLTFDGEDSVFLRPQSIKR  325 (445)
T ss_pred             CEEEEecccceeeeehhcccceecc--eeccCCceeeeeecCCCC---EEEEEEcCCceEEEEeecCCCccccCccccee
Confidence            9999999999 99996443322222  233445899999999994   2222222222222111                


Q ss_pred             ------cccc-cC---CCCccceeEEEEeeCCCeeEeeec
Q psy11524        282 ------WSHS-LD---KPDTGSVYDLVWSSDATQIAGACA  311 (323)
Q Consensus       282 ------~~~~-~~---~~~~~~v~~~~~s~~g~~l~s~~~  311 (323)
                            +... +.   +.-.+.+.+++|.|.|.+||+.-.
T Consensus       326 ~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK  365 (445)
T KOG2139|consen  326 VLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK  365 (445)
T ss_pred             eeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence                  1110 01   111467899999999999997643

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=5.8e-15  Score=128.07  Aligned_cols=216  Identities=16%  Similarity=0.156  Sum_probs=141.4

Q ss_pred             cCCCCCEEEEEEcCCCCeEEEEeeCC--eEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEE-EcCCCceEeeeEEe
Q psy11524         78 LNVSPPVYSAAWSPDSNKVLLTQAKS--LVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILS-GGEDCKYKASFVWD  153 (323)
Q Consensus        78 ~~~~~~v~~~~~sp~~~~l~~~~~~~--~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~i~v~d  153 (323)
                      ..+...+...+|+|||++|++.+..+  ..|++|+..+. ...+....+.+....|+|||+.|+. .+.++. .+|+++|
T Consensus       195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~-~~Iy~~d  273 (430)
T PRK00178        195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGN-PEIYVMD  273 (430)
T ss_pred             ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCC-ceEEEEE
Confidence            35677889999999999999876543  36888888765 4444444555667899999998874 445553 2344889


Q ss_pred             CCCCeeeEeecCCCceeEEEEecCCCEEEEEeC--C--eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecC-c
Q psy11524        154 TDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY--N--TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN-V  228 (323)
Q Consensus       154 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~  228 (323)
                      +.++....+..+........|+|||+.++..+.  +  .|+++|+.+.....+...........|+|+|++|+..+.+ +
T Consensus       274 ~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~  353 (430)
T PRK00178        274 LASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDG  353 (430)
T ss_pred             CCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC
Confidence            987777777666666778899999998887775  2  6888888754433322222334567899999999877642 2


Q ss_pred             ---EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCC-CC--eEEEecccc---cCCCCccceeEEEE
Q psy11524        229 ---IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKN-RD--LYLSMWSHS---LDKPDTGSVYDLVW  299 (323)
Q Consensus       229 ---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~-~~--~~~~~~~~~---~~~~~~~~v~~~~~  299 (323)
                         |.++|+.+++....   .. ........|+|+|    +.+.....+ +.  +.+.+....   ....+.+.+...+|
T Consensus       354 ~~~l~~~dl~tg~~~~l---t~-~~~~~~p~~spdg----~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~w  425 (430)
T PRK00178        354 NFHVAAQDLQRGSVRIL---TD-TSLDESPSVAPNG----TMLIYATRQQGRGVLMLVSINGRVRLPLPTAQGEVREPSW  425 (430)
T ss_pred             ceEEEEEECCCCCEEEc---cC-CCCCCCceECCCC----CEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCcc
Confidence               88899988765432   22 1223356899998    566554433 33  333333321   12223455666677


Q ss_pred             eeC
Q psy11524        300 SSD  302 (323)
Q Consensus       300 s~~  302 (323)
                      +|-
T Consensus       426 s~~  428 (430)
T PRK00178        426 SPY  428 (430)
T ss_pred             CCC
Confidence            663

>KOG0322|consensus

Probab=99.72  E-value=3.5e-16  Score=117.98  Aligned_cols=232  Identities=13%  Similarity=0.140  Sum_probs=162.7

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEee-ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQ-AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD  155 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~  155 (323)
                      .|.+.|+++.|..+++ |..+... |.|++|.+.+.  ...+. .+...|+.+.-.|+ ..+.+-++|+.+.   +|++.
T Consensus        12 p~~~~v~s~~fqa~~r-L~sg~~~-G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~---lw~ia   85 (323)
T KOG0322|consen   12 PHSSSVTSVLFQANER-LMSGLSV-GIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLI---LWTIA   85 (323)
T ss_pred             cccchheehhhccchh-hhccccc-ceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEE---EEEcc
Confidence            5888899999988776 5555444 79999998776  33444 46778888888886 5677888888888   88874


Q ss_pred             CCeeeE-------------------------e-----------------------------ecCCCceeEEEEec-CC-C
Q psy11524        156 GRQLYS-------------------------S-----------------------------LTHDHPISSLAWAP-GG-D  179 (323)
Q Consensus       156 ~~~~~~-------------------------~-----------------------------~~~~~~v~~~~~~p-~~-~  179 (323)
                      ......                         +                             ....+.+.+..+.. ++ +
T Consensus        86 ~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~  165 (323)
T KOG0322|consen   86 YSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGST  165 (323)
T ss_pred             CcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccce
Confidence            310000                         0                             01123345554332 23 3


Q ss_pred             EEEEEeC-C-eEEEEeCCCCe-----------eeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCC--ceeeee
Q psy11524        180 MFAVGSY-N-TLRLCDKVGWS-----------HSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSS--SSSNVT  243 (323)
Q Consensus       180 ~l~~~~~-~-~i~i~d~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~--~~~~~~  243 (323)
                      .++.++. . .+.+||+..+.           ......|..+|.++.+.+.-..=++++.+. +..|.+...  ......
T Consensus       166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~  245 (323)
T KOG0322|consen  166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK  245 (323)
T ss_pred             EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc
Confidence            3445554 4 99999987531           112345888999999988544456677777 888877533  211100


Q ss_pred             cCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        244 APLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       244 ~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      ...-..-.+..+..-||+    +.++....|+++++++.++.    +.+.|...|++++|+|+...+|+++.|++|.+|+
T Consensus       246 e~~lknpGv~gvrIRpD~----KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWk  321 (323)
T KOG0322|consen  246 EITLKNPGVSGVRIRPDG----KILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWK  321 (323)
T ss_pred             eEEecCCCccceEEccCC----cEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence            011223457788899998    89999999999999988886    7888999999999999999999999999999999


Q ss_pred             e
Q psy11524        320 I  320 (323)
Q Consensus       320 l  320 (323)
                      |
T Consensus       322 L  322 (323)
T KOG0322|consen  322 L  322 (323)
T ss_pred             c
Confidence            7

>KOG4227|consensus

Probab=99.72  E-value=1.5e-15  Score=120.84  Aligned_cols=236  Identities=8%  Similarity=0.058  Sum_probs=164.2

Q ss_pred             ecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-------eeEe--eccCCCeEEEEECCCCCEEEEEcCCCceE
Q psy11524         77 TLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-------ATKW--QAHDGLILKVAWCSSTDLILSGGEDCKYK  147 (323)
Q Consensus        77 ~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-------~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  147 (323)
                      .++|.+-|.++.||.++++|++|+.+ ..+.+|...+.       ...+  ..|...|.+++|....+.+++|..+++|.
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD-~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI  130 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDD-MHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI  130 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCc-ceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence            34699999999999999999998877 48999987543       1222  34568999999999889999999999999


Q ss_pred             eeeEEeCCCCeeeEeecCC---CceeEEEEecCCCEEEEEeCC-eEEEEeCCCCe----eeecCCCCccEEEEEEcCC-C
Q psy11524        148 ASFVWDTDGRQLYSSLTHD---HPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWS----HSLDKPDTGSVYDLVWSND-A  218 (323)
Q Consensus       148 ~i~v~d~~~~~~~~~~~~~---~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~----~~~~~~~~~~v~~~~~~~~-~  218 (323)
                         ..|++.++......+.   +.|+.+..+|..+.|++.+.+ .|.+||.+...    .............+.|+|. .
T Consensus       131 ---~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P  207 (609)
T KOG4227|consen  131 ---KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP  207 (609)
T ss_pred             ---eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence               9999866655555444   489999999988889988885 99999987432    2233334566889999995 4


Q ss_pred             CEEEEEecCc-EEEEEcCCCc-eeeee-cCCCC---ccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc---cCCC
Q psy11524        219 TQIAGACANV-IHIFDISSSS-SSNVT-APLSH---SHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---LDKP  289 (323)
Q Consensus       219 ~~l~~~~~d~-i~iwd~~~~~-~~~~~-~~~~~---~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---~~~~  289 (323)
                      .+|++.+..+ +.+||.+..+ ++... -+.+.   ...-.++.|+|.|.   +.+++ .....-..+++-..   +++.
T Consensus       208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~---Q~msi-RR~~~P~~~D~~S~R~~V~k~  283 (609)
T KOG4227|consen  208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGN---QFMSI-RRGKCPLYFDFISQRCFVLKS  283 (609)
T ss_pred             eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCC---eehhh-hccCCCEEeeeecccceeEec
Confidence            5677777777 9999987643 22110 01111   22335788999983   33332 22112222332221   1111


Q ss_pred             -C-------ccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        290 -D-------TGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       290 -~-------~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                       |       ...+.+++|..|. .+++|+++=.|++|+|.
T Consensus       284 D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP  322 (609)
T KOG4227|consen  284 DHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLP  322 (609)
T ss_pred             cCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecC
Confidence             1       2457788887665 49999999999999984

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.6e-14  Score=125.26  Aligned_cols=200  Identities=12%  Similarity=0.095  Sum_probs=134.2

Q ss_pred             EEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEE
Q psy11524        105 VIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAV  183 (323)
Q Consensus       105 ~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  183 (323)
                      .|+++|..+. .+.+..+...+....|+|||+.|+..+.++.-..|++|++++.....+....+.....+|+|||+.|+.
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~  259 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF  259 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence            5777787665 566667788899999999999988776543222344999976666666555556667899999998875


Q ss_pred             EeC--C--eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEec-Cc---EEEEEcCCCceeeeecCCCCccceEEE
Q psy11524        184 GSY--N--TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACA-NV---IHIFDISSSSSSNVTAPLSHSHEITQL  255 (323)
Q Consensus       184 ~~~--~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~---i~iwd~~~~~~~~~~~~~~~~~~v~~~  255 (323)
                      ...  +  .|+++|+.+.....+..+........|+|||+.|+..+. ++   |+++|+.+++....   ..........
T Consensus       260 ~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l---t~~~~~~~~~  336 (430)
T PRK00178        260 VLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV---TFVGNYNARP  336 (430)
T ss_pred             EEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe---ecCCCCccce
Confidence            443  3  799999987665555555556677899999998877664 33   77888887775432   2112233457


Q ss_pred             EEccCCCCccceEEEEeCC-C--CeEEEecccc---cCCCCccceeEEEEeeCCCeeEeeecC
Q psy11524        256 AVNQTGSLQERHVAFIDKN-R--DLYLSMWSHS---LDKPDTGSVYDLVWSSDATQIAGACAN  312 (323)
Q Consensus       256 ~~~p~g~~~d~~l~~~~~~-~--~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~d  312 (323)
                      .|+|+|    +.|+..... +  .+.++++.+.   .... ........|+|||+.|+..+.+
T Consensus       337 ~~Spdg----~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~-~~~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        337 RLSADG----KTLVMVHRQDGNFHVAAQDLQRGSVRILTD-TSLDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             EECCCC----CEEEEEEccCCceEEEEEECCCCCEEEccC-CCCCCCceECCCCCEEEEEEec
Confidence            899999    666655433 2  2455555443   1111 1123356899999988865543

>KOG2321|consensus

Probab=99.71  E-value=1.3e-15  Score=126.49  Aligned_cols=242  Identities=17%  Similarity=0.165  Sum_probs=167.3

Q ss_pred             cccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEeeccCC--------------------------
Q psy11524         70 QALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDG--------------------------  123 (323)
Q Consensus        70 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~--------------------------  123 (323)
                      +.+++.+.|++....+.|..+|||+|+++.|...-.|++||+.+-...+..|-.                          
T Consensus        40 ~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ie  119 (703)
T KOG2321|consen   40 QRIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIE  119 (703)
T ss_pred             HHHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceee
Confidence            445667778899999999999999999888877778999987765333333321                          


Q ss_pred             ---------------CeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeC-
Q psy11524        124 ---------------LILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-  186 (323)
Q Consensus       124 ---------------~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-  186 (323)
                                     .-.+++++.-..-|+.++....|+   -++++ |.-+..+....+.++++..++-..+|++|+. 
T Consensus       120 fHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evY---RlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~  196 (703)
T KOG2321|consen  120 FHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVY---RLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTED  196 (703)
T ss_pred             ehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceE---EEEccccccccccccccccceeeeecCccceEEecccC
Confidence                           112223322112233333344455   67774 6777777777789999999998889999997 


Q ss_pred             CeEEEEeCCCCeee-------ecCCCCc-----cEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceE
Q psy11524        187 NTLRLCDKVGWSHS-------LDKPDTG-----SVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEIT  253 (323)
Q Consensus       187 ~~i~i~d~~~~~~~-------~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~  253 (323)
                      +.+..||.+.....       ....|.+     .|+++.|+.+|-.+++|+..| +.|||++..+++..- -++...+|.
T Consensus       197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~  275 (703)
T KOG2321|consen  197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIK  275 (703)
T ss_pred             ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCCcccee
Confidence            49999998754221       1112333     399999999999999999999 999999999887741 233455888


Q ss_pred             EEEEccCCC------CccceEEEEeCCCCeEEEecccccCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        254 QLAVNQTGS------LQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       254 ~~~~~p~g~------~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      .+.|.+.+.      .....+.+|+.......-.++.      ...++.+++-|++..++++-.++.+..|-+.
T Consensus       276 ~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp------t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  276 KLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP------TSDLNDFCFVPGSGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             eecccccCCCceEEecchHHhhhcccccCCceeeccc------cCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence            999977642      1112334444443333322222      5679999999999999999999888877553

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.69  E-value=1.1e-14  Score=126.05  Aligned_cols=188  Identities=20%  Similarity=0.212  Sum_probs=133.3

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCC--eEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEE-EcCCCceEeeeEEeC
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKS--LVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILS-GGEDCKYKASFVWDT  154 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~--~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~i~v~d~  154 (323)
                      .+...+...+|+|||++|+++....  ..|++|+..+. ...+..+.+.+.+++|+|||+.|+. .+.++.. .|++|++
T Consensus       187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~-~i~~~d~  265 (417)
T TIGR02800       187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNP-DIYVMDL  265 (417)
T ss_pred             cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCc-cEEEEEC
Confidence            4566789999999999999886543  47999998765 4555556667778999999987764 4444432 2338999


Q ss_pred             CCCeeeEeecCCCceeEEEEecCCCEEEEEeC--C--eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc--
Q psy11524        155 DGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY--N--TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV--  228 (323)
Q Consensus       155 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--  228 (323)
                      .+.....+..+........|+|||+.|+..+.  +  .|+++|+.+.....+..+......+.|+|+|++|+.++.++  
T Consensus       266 ~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~  345 (417)
T TIGR02800       266 DGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGG  345 (417)
T ss_pred             CCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCc
Confidence            77666666666555667899999999887765  2  68888987655444444556677889999999988877642  


Q ss_pred             --EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCC
Q psy11524        229 --IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNR  275 (323)
Q Consensus       229 --i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~  275 (323)
                        |.+||+.++.....   ... .......|+|++    +.|.....++
T Consensus       346 ~~i~~~d~~~~~~~~l---~~~-~~~~~p~~spdg----~~l~~~~~~~  386 (417)
T TIGR02800       346 FNIAVMDLDGGGERVL---TDT-GLDESPSFAPNG----RMILYATTRG  386 (417)
T ss_pred             eEEEEEeCCCCCeEEc---cCC-CCCCCceECCCC----CEEEEEEeCC
Confidence              88889887654332   222 234567899998    6666655443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1523|consensus

Probab=99.69  E-value=5.9e-15  Score=114.36  Aligned_cols=195  Identities=12%  Similarity=0.109  Sum_probs=154.8

Q ss_pred             eeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC----CeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEE
Q psy11524        118 WQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG----RQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLC  192 (323)
Q Consensus       118 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~----~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~  192 (323)
                      +.....+|++.+|++|...+|.+.....|.   ||...+    +...++..|...|+.+.|+|..+.|++++.| .-++|
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~evh---iy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw   82 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVH---IYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW   82 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCceEE---EEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence            334567899999999999999999999999   998853    4567788899999999999999999999997 99999


Q ss_pred             eC-CCC---eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCcee--eeecCCCCccceEEEEEccCCCCcc
Q psy11524        193 DK-VGW---SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSS--NVTAPLSHSHEITQLAVNQTGSLQE  265 (323)
Q Consensus       193 d~-~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~p~g~~~d  265 (323)
                      .. .+.   +...+..++...+++.|+|.++.+++|+... |.+|-.+..+--  ....-..+...|.++.|+|++    
T Consensus        83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn----  158 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN----  158 (361)
T ss_pred             ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc----
Confidence            97 443   2334555888999999999999999999998 888876654321  111024567789999999998    


Q ss_pred             ceEEEEeCCCCeEEEecc-----cc-----------------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        266 RHVAFIDKNRDLYLSMWS-----HS-----------------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       266 ~~l~~~~~~~~~~~~~~~-----~~-----------------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      -.++.++.|++.+++..-     ..                 ......+.+..+.|+|+|..|+-.+.|+.+.+-+
T Consensus       159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d  234 (361)
T KOG1523|consen  159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD  234 (361)
T ss_pred             ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence            788888888887766431     11                 1112368899999999999999999999988765

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=4.3e-14  Score=122.36  Aligned_cols=207  Identities=10%  Similarity=0.063  Sum_probs=133.2

Q ss_pred             EEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEE
Q psy11524        105 VIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAV  183 (323)
Q Consensus       105 ~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  183 (323)
                      .++++|..+. .+.+..+...+....|+|||+.|+..+.+..-..|+++|+.+.....+..........+|+|||+.|+.
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~  278 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLAL  278 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEE
Confidence            5777776655 556677788899999999999988775433212344999976555555544445567899999998876


Q ss_pred             EeC--C--eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEec-Cc---EEEEEcCCCceeeeecCCCCccceEEE
Q psy11524        184 GSY--N--TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACA-NV---IHIFDISSSSSSNVTAPLSHSHEITQL  255 (323)
Q Consensus       184 ~~~--~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~---i~iwd~~~~~~~~~~~~~~~~~~v~~~  255 (323)
                      ...  +  .|+++|+.+.....+..+.......+|+|||++|+..+. ++   |+++|+.+++....   ..........
T Consensus       279 ~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L---t~~g~~~~~~  355 (448)
T PRK04792        279 VLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL---TFEGEQNLGG  355 (448)
T ss_pred             EEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE---ecCCCCCcCe
Confidence            543  3  588899887666655555556778999999998877664 33   77778887765442   2122223457


Q ss_pred             EEccCCCCccceEEEEeC-CCCeEE--Eecccc---cCCCCccceeEEEEeeCCCeeEeeec-CCe--EEEEE
Q psy11524        256 AVNQTGSLQERHVAFIDK-NRDLYL--SMWSHS---LDKPDTGSVYDLVWSSDATQIAGACA-NGS--LLLGT  319 (323)
Q Consensus       256 ~~~p~g~~~d~~l~~~~~-~~~~~~--~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~-dg~--i~~~~  319 (323)
                      +|+|+|    +.|++... .+...+  +++...   .... .......+|+|||+.|+..+. +|.  +++++
T Consensus       356 ~~SpDG----~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~-~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~  423 (448)
T PRK04792        356 SITPDG----RSMIMVNRTNGKFNIARQDLETGAMQVLTS-TRLDESPSVAPNGTMVIYSTTYQGKQVLAAVS  423 (448)
T ss_pred             eECCCC----CEEEEEEecCCceEEEEEECCCCCeEEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence            899999    66665543 333334  444332   1111 112234689999998775444 443  44444

>KOG0644|consensus

Probab=99.68  E-value=1.1e-16  Score=138.16  Aligned_cols=230  Identities=18%  Similarity=0.217  Sum_probs=166.1

Q ss_pred             ecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC
Q psy11524         77 TLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT  154 (323)
Q Consensus        77 ~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~  154 (323)
                      .+.|.+.|+|..|...|.++++++++ ..+++|...+.  .....+|.+.|+.++.+.+..++++++.|..|+   +|-+
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd-~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr---vWrl  261 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDD-RLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR---VWRL  261 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCcc-ceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEE---EEec
Confidence            34599999999999999999998777 59999997765  678899999999999998888999999999999   9999


Q ss_pred             -CCCeeeEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCC-CCeeee----cCCCCcc-------------------
Q psy11524        155 -DGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKV-GWSHSL----DKPDTGS-------------------  208 (323)
Q Consensus       155 -~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~-~~~~~~----~~~~~~~-------------------  208 (323)
                       ++.++..+.+|++.|++++|+|-.    +.+. |++++||.+ ......    .......                   
T Consensus       262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d  337 (1113)
T KOG0644|consen  262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD  337 (1113)
T ss_pred             CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence             588888999999999999999954    3444 599999976 111000    0000011                   


Q ss_pred             -------EEEEEEcCCCCEEE-----------EEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEE
Q psy11524        209 -------VYDLVWSNDATQIA-----------GACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVA  269 (323)
Q Consensus       209 -------v~~~~~~~~~~~l~-----------~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~  269 (323)
                             ...++|..+.-.++           ++-.+. +.+|++.+|.....  ..+|...+..+.++|-..   ....
T Consensus       338 ~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~--l~ghsd~~yvLd~Hpfn~---ri~m  412 (1113)
T KOG0644|consen  338 GEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHN--LMGHSDEVYVLDVHPFNP---RIAM  412 (1113)
T ss_pred             cccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhh--hcccccceeeeeecCCCc---Hhhh
Confidence                   11222222222222           222344 77888888888877  788999999999999764   2233


Q ss_pred             EEeCCCCeEEEecccc-----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        270 FIDKNRDLYLSMWSHS-----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       270 ~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      ....+|...+|++-.+     -..+ ...+..-.||+||..++...+-|.++|...
T Consensus       413 sag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~  467 (1113)
T KOG0644|consen  413 SAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGT  467 (1113)
T ss_pred             hccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEecc
Confidence            3445555555555443     1122 456677889999999998888888887643

>KOG0649|consensus

Probab=99.68  E-value=4.3e-14  Score=105.67  Aligned_cols=221  Identities=20%  Similarity=0.201  Sum_probs=147.7

Q ss_pred             CEEEEEEcCCCCeEEEEeeCCeEEEEeCCCC----------c--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeee
Q psy11524         83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN----------K--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASF  150 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~----------~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~  150 (323)
                      .|.+-+|+|.+++|++|..+ |.|.+..+..          +  +...++|.+++..++|.  ..+|++++ ||.|+   
T Consensus        12 tvf~qa~sp~~~~l~agn~~-G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~---   84 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLF-GDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVY---   84 (325)
T ss_pred             HHHHHhhCCcceEEEEecCC-CeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEE---
Confidence            45566889999999887666 6887776432          1  44558899999999998  34677766 59998   


Q ss_pred             EEeCCC-------CeeeEe--e-----cCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCee-eecCCCCccEEEEEE
Q psy11524        151 VWDTDG-------RQLYSS--L-----THDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSH-SLDKPDTGSVYDLVW  214 (323)
Q Consensus       151 v~d~~~-------~~~~~~--~-----~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~-~~~~~~~~~v~~~~~  214 (323)
                      -|..+.       +++...  .     ..-..|+++...|..+-+++++.| .++-||+.+..+ ..+.+|.+.+.+++-
T Consensus        85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~  164 (325)
T KOG0649|consen   85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVG  164 (325)
T ss_pred             EeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeee
Confidence            776521       111111  1     122468899999875555555454 999999986544 578899999999998


Q ss_pred             cCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCc--------cceEEEEEccCCCCccceEEEEeCCCCeEEEecccc
Q psy11524        215 SNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHS--------HEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS  285 (323)
Q Consensus       215 ~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~--------~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~  285 (323)
                      -.....+++|++|| +++||.++++.+..+....+.        ..|.+++-+.+      .+ ++.......+|+++..
T Consensus       165 R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed------Wl-vCGgGp~lslwhLrss  237 (325)
T KOG0649|consen  165 RNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED------WL-VCGGGPKLSLWHLRSS  237 (325)
T ss_pred             cccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc------eE-EecCCCceeEEeccCC
Confidence            55455789999999 999999999988864322222        24455554433      22 2223334556665543


Q ss_pred             ----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        286 ----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       286 ----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                          +++. ..++..+.|-.|  .+++++.-+.|.-|.+
T Consensus       238 e~t~vfpi-pa~v~~v~F~~d--~vl~~G~g~~v~~~~l  273 (325)
T KOG0649|consen  238 ESTCVFPI-PARVHLVDFVDD--CVLIGGEGNHVQSYTL  273 (325)
T ss_pred             CceEEEec-ccceeEeeeecc--eEEEeccccceeeeee
Confidence                3333 567778888544  6777777767777765

>KOG0642|consensus

Probab=99.68  E-value=7.9e-16  Score=127.44  Aligned_cols=237  Identities=14%  Similarity=0.132  Sum_probs=169.4

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeeccc---ccc---------ccc-eeeecCCCCCEEEEEEcCCCCeEEEEeeCCe
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASHS---WPQ---------ALS-LCRTLNVSPPVYSAAWSPDSNKVLLTQAKSL  104 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~---------~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~  104 (323)
                      .++..|.+.|..++|.|-...++.+..++-   |.-         ..+ ++..-.|.++|.|++..++++.+++|+-| |
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D-g  366 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID-G  366 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC-c
Confidence            488899999999999998754444443332   321         011 11122399999999999999999999888 6


Q ss_pred             EEEEeCCCC------------ceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeec--CCCcee
Q psy11524        105 VIKPLSPNN------------KATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLT--HDHPIS  170 (323)
Q Consensus       105 ~v~~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~--~~~~v~  170 (323)
                      .|+.|++..            ....+.+|.+.++.+++|+....|++++.||+++   .|+..+.....+..  ..+...
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr---~w~~~~~~~~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVR---LWEPTEESPCTFGEPKEHGYPL  443 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEE---eeccCCcCccccCCccccCCcc
Confidence            999995431            1346789999999999999989999999999999   99997555444332  233345


Q ss_pred             EEEEecCCCEEEEEeC--CeEEEEeCCC-CeeeecCC-------CCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCce
Q psy11524        171 SLAWAPGGDMFAVGSY--NTLRLCDKVG-WSHSLDKP-------DTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSS  239 (323)
Q Consensus       171 ~~~~~p~~~~l~~~~~--~~i~i~d~~~-~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~  239 (323)
                      ++.+-.....+..++.  +.-.+++... .....+..       ....+..+.++|.+.+.+++..|. |+++|..++++
T Consensus       444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~  523 (577)
T KOG0642|consen  444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI  523 (577)
T ss_pred             eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence            5555432211222222  2222333321 11221111       123477889999999999999999 99999999999


Q ss_pred             eeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        240 SNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       240 ~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      +..  ...|...++++++.|+|    .++..++-++.+.+|.+..
T Consensus       524 l~s--~~a~~~svtslai~~ng----~~l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  524 LHS--MVAHKDSVTSLAIDPNG----PYLMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             chh--eeeccceecceeecCCC----ceEEeecCCceeehhhccc
Confidence            988  78899999999999999    8999999999999998755

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=8.8e-14  Score=119.54  Aligned_cols=210  Identities=12%  Similarity=0.084  Sum_probs=132.4

Q ss_pred             eEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCE--E-EEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCC
Q psy11524        104 LVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDL--I-LSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGD  179 (323)
Q Consensus       104 ~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~--l-~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~  179 (323)
                      ..|++.|..+. .+.++.......+.+|+|||+.  + ++...+|. .+||+.++.+.....+....+.....+|+|||+
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~-~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~  243 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGV-PKIFLGSLENPAGKKILALQGNQLMPTFSPRKK  243 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCC-ceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence            46888887765 5666666677788999999975  3 24444444 245588887766666666666677889999999


Q ss_pred             EEEEEeC--C--eE--EEEeCCC----CeeeecCCCCccEEEEEEcCCCCEEEEEec-Cc---EEEEEcCC-Cceeeeec
Q psy11524        180 MFAVGSY--N--TL--RLCDKVG----WSHSLDKPDTGSVYDLVWSNDATQIAGACA-NV---IHIFDISS-SSSSNVTA  244 (323)
Q Consensus       180 ~l~~~~~--~--~i--~i~d~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~---i~iwd~~~-~~~~~~~~  244 (323)
                      .|+..+.  +  .+  .+|++..    ................+|+|||+.|+..+. ++   |+++++.. +.....  
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~--  321 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL--  321 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE--
Confidence            9887763  2  34  4467553    222233222334567899999998887764 45   44445432 222333  


Q ss_pred             CCCCccceEEEEEccCCCCccceEEEEeCC---CCeEEEecccc---cCCCCccceeEEEEeeCCCeeEeee-c--CCeE
Q psy11524        245 PLSHSHEITQLAVNQTGSLQERHVAFIDKN---RDLYLSMWSHS---LDKPDTGSVYDLVWSSDATQIAGAC-A--NGSL  315 (323)
Q Consensus       245 ~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~---~~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~-~--dg~i  315 (323)
                      +......+....|+|+|    +.|+....+   ..+.+|++...   ........+..+.|+|||+.|+..+ .  ...|
T Consensus       322 lt~~~~~~~~p~wSPDG----~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L  397 (428)
T PRK01029        322 LTKKYRNSSCPAWSPDG----KKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL  397 (428)
T ss_pred             eccCCCCccceeECCCC----CEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence            34444566789999999    666654432   23666776554   1111134567899999999877433 3  2456


Q ss_pred             EEEEe
Q psy11524        316 LLGTI  320 (323)
Q Consensus       316 ~~~~l  320 (323)
                      +++++
T Consensus       398 ~~vdl  402 (428)
T PRK01029        398 YLISL  402 (428)
T ss_pred             EEEEC
Confidence            66665

>KOG1272|consensus

Probab=99.67  E-value=1.9e-16  Score=128.27  Aligned_cols=253  Identities=14%  Similarity=0.095  Sum_probs=188.9

Q ss_pred             eeEeeEeccCCcceeeeeecc---ccc-cccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeec
Q psy11524         46 TVINYPISPYISVLHSYAASH---SWP-QALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQA  120 (323)
Q Consensus        46 ~v~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~  120 (323)
                      .-+.+.++.+|..+.....-|   ..| .+.++...+.-.+.|.++.|-.+.+++|++- . ..+++||..+. ++.+..
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQ-K-~y~yvYD~~GtElHClk~  208 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQ-K-KYVYVYDNNGTELHCLKR  208 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhh-h-ceEEEecCCCcEEeehhh
Confidence            345677788886443221111   233 5666777777889999999999999999863 3 38999998776 555554


Q ss_pred             cCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCC-
Q psy11524        121 HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGW-  197 (323)
Q Consensus       121 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~-  197 (323)
                      | ..|..+.|.|..-+|++++..|.++   .-|+. |+.+..+....+.+..++-+|-+..+-+|.. |+|.+|..... 
T Consensus       209 ~-~~v~rLeFLPyHfLL~~~~~~G~L~---Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske  284 (545)
T KOG1272|consen  209 H-IRVARLEFLPYHFLLVAASEAGFLK---YQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE  284 (545)
T ss_pred             c-CchhhhcccchhheeeecccCCceE---EEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence            4 6688999999988999999999999   99995 8888888888888999999998888888888 59999998754 


Q ss_pred             eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCC
Q psy11524        198 SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRD  276 (323)
Q Consensus       198 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~  276 (323)
                      .+..+..|.++|.++++.++|.|++|.+.|. ++|||++.-..+.++  .. ..+...+++|..|     .+++. ....
T Consensus       285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~--~t-p~~a~~ls~Sqkg-----lLA~~-~G~~  355 (545)
T KOG1272|consen  285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY--RT-PHPASNLSLSQKG-----LLALS-YGDH  355 (545)
T ss_pred             hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccccee--ec-CCCcccccccccc-----ceeee-cCCe
Confidence            5666778999999999999999999999999 999999988766662  22 4567778888775     33332 2223


Q ss_pred             eEEEecccc----------cCCCCccceeEEEEeeCCCeeEeeecCCe
Q psy11524        277 LYLSMWSHS----------LDKPDTGSVYDLVWSSDATQIAGACANGS  314 (323)
Q Consensus       277 ~~~~~~~~~----------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~  314 (323)
                      +.+|.-...          .... .+.|..+.|.|-...|..|..-|-
T Consensus       356 v~iw~d~~~~s~~~~~pYm~H~~-~~~V~~l~FcP~EDvLGIGH~~G~  402 (545)
T KOG1272|consen  356 VQIWKDALKGSGHGETPYMNHRC-GGPVEDLRFCPYEDVLGIGHAGGI  402 (545)
T ss_pred             eeeehhhhcCCCCCCcchhhhcc-CcccccceeccHHHeeeccccCCc
Confidence            444432110          1112 468999999998777776665553

>KOG1188|consensus

Probab=99.67  E-value=9.7e-15  Score=114.07  Aligned_cols=181  Identities=13%  Similarity=0.073  Sum_probs=144.3

Q ss_pred             CEEEEEcCCCceEeeeEEeC-CCCeeeEeecCCCceeEEEEec--CCCEEEEEeCC-eEEEEeCCCC---eeeecCCCC-
Q psy11524        135 DLILSGGEDCKYKASFVWDT-DGRQLYSSLTHDHPISSLAWAP--GGDMFAVGSYN-TLRLCDKVGW---SHSLDKPDT-  206 (323)
Q Consensus       135 ~~l~~~~~d~~i~~i~v~d~-~~~~~~~~~~~~~~v~~~~~~p--~~~~l~~~~~~-~i~i~d~~~~---~~~~~~~~~-  206 (323)
                      ..+|++...|.|+   +||. +++.+..+.+++..++.++|..  ....+.+++.| +|++||++..   .......++ 
T Consensus        41 ~~vav~lSngsv~---lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~  117 (376)
T KOG1188|consen   41 TAVAVSLSNGSVR---LYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG  117 (376)
T ss_pred             eeEEEEecCCeEE---EEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC
Confidence            5688888999999   9998 4788899999999999999987  35567788876 9999998853   222333344 


Q ss_pred             ccEEEEEEcCCCCEEEEEec----Cc-EEEEEcCCCce-eeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEE
Q psy11524        207 GSVYDLVWSNDATQIAGACA----NV-IHIFDISSSSS-SNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLS  280 (323)
Q Consensus       207 ~~v~~~~~~~~~~~l~~~~~----d~-i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~  280 (323)
                      .+..+++.+..++.+++|+.    +- +.+||++..+. +..+ ...|...|+++.|+|..+   +.|..++.||-+.++
T Consensus       118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~-~eSH~DDVT~lrFHP~~p---nlLlSGSvDGLvnlf  193 (376)
T KOG1188|consen  118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL-NESHNDDVTQLRFHPSDP---NLLLSGSVDGLVNLF  193 (376)
T ss_pred             CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh-hhhccCcceeEEecCCCC---CeEEeecccceEEee
Confidence            46778887778888888864    44 99999998776 5553 567999999999999874   899999999999999


Q ss_pred             ecccc-------cCCCCccceeEEEEeeCC-CeeEeeecCCeEEEEEeec
Q psy11524        281 MWSHS-------LDKPDTGSVYDLVWSSDA-TQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       281 ~~~~~-------~~~~~~~~v~~~~~s~~g-~~l~s~~~dg~i~~~~l~~  322 (323)
                      +++..       ..-.|...|..+.|..++ +.|.+-+.+++..+|++.+
T Consensus       194 D~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~  243 (376)
T KOG1188|consen  194 DTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED  243 (376)
T ss_pred             ecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence            98764       111246779999999987 4588889999999999865

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=6e-14  Score=120.55  Aligned_cols=216  Identities=12%  Similarity=0.097  Sum_probs=136.6

Q ss_pred             cccceeEeeEeccCCcceeeeeec---c---cc--cc-ccceeeecCCCCCEEEEEEcCCCCeEEEEeeCC----eEEEE
Q psy11524         42 RYDGTVINYPISPYISVLHSYAAS---H---SW--PQ-ALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKS----LVIKP  108 (323)
Q Consensus        42 ~~~~~v~~~~~~~~~~~~~~~~~~---~---~~--~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~----~~v~~  108 (323)
                      .....+.+-.|+|||+.++.+..+   +   .|  +. ..+..+.....+.....+|||||++|++.....    ..+..
T Consensus       182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~  261 (428)
T PRK01029        182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS  261 (428)
T ss_pred             cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence            344556677999999764322211   1   11  11 111111122345556789999999999876432    23444


Q ss_pred             eCCCC----ceeEeecc-CCCeEEEEECCCCCEEEEEc-CCCceEeeeEEeCC--CCeeeEeecCCCceeEEEEecCCCE
Q psy11524        109 LSPNN----KATKWQAH-DGLILKVAWCSSTDLILSGG-EDCKYKASFVWDTD--GRQLYSSLTHDHPISSLAWAPGGDM  180 (323)
Q Consensus       109 ~~~~~----~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~d~~i~~i~v~d~~--~~~~~~~~~~~~~v~~~~~~p~~~~  180 (323)
                      |+...    ....+... .+.....+|+|||+.|+..+ .+|... |++++++  +.....+......+....|+|||+.
T Consensus       262 ~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~-ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~  340 (428)
T PRK01029        262 FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPR-IYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKK  340 (428)
T ss_pred             eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCce-EEEEECcccccceEEeccCCCCccceeECCCCCE
Confidence            66442    23334333 23446789999999887765 456554 3355553  3445555555566788999999999


Q ss_pred             EEEEeC--C--eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEec---Cc-EEEEEcCCCceeeeecCCCCccce
Q psy11524        181 FAVGSY--N--TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACA---NV-IHIFDISSSSSSNVTAPLSHSHEI  252 (323)
Q Consensus       181 l~~~~~--~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~-i~iwd~~~~~~~~~~~~~~~~~~v  252 (323)
                      |+..+.  +  .|++||+.+.....+......+....|+|||+.|+....   .. |+++|+..++....   ....+.+
T Consensus       341 Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L---t~~~g~~  417 (428)
T PRK01029        341 IAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI---VIGSGEK  417 (428)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe---ecCCCcc
Confidence            887765  2  799999986655555444446788999999998875543   23 89999988776543   3344567


Q ss_pred             EEEEEccCC
Q psy11524        253 TQLAVNQTG  261 (323)
Q Consensus       253 ~~~~~~p~g  261 (323)
                      ...+|+|-.
T Consensus       418 ~~p~Ws~~~  426 (428)
T PRK01029        418 RFPSWGAFP  426 (428)
T ss_pred             cCceecCCC
Confidence            788898864

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.66  E-value=2.5e-12  Score=108.01  Aligned_cols=258  Identities=12%  Similarity=0.122  Sum_probs=163.0

Q ss_pred             cceeEeeEeccCCcceeeeeeccccccccceeeecCCCCCEEEEEEcCCCCeEEEEee---CCeEEEEeCCCC---ce--
Q psy11524         44 DGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQA---KSLVIKPLSPNN---KA--  115 (323)
Q Consensus        44 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---~~~~v~~~~~~~---~~--  115 (323)
                      ...|..+.|..+..             ++..............++++|++++|.++..   ..+.|..|....   .+  
T Consensus        12 ~~gI~~~~~d~~~g-------------~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~   78 (345)
T PF10282_consen   12 GGGIYVFRFDEETG-------------TLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL   78 (345)
T ss_dssp             STEEEEEEEETTTT-------------EEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE
T ss_pred             CCcEEEEEEcCCCC-------------CceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEE
Confidence            45677777754432             2222233335566777899999999998876   356776665443   22  


Q ss_pred             -eEeeccCCCeEEEEECCCCCEEEEEcC-CCceEeeeEEeCCC-CeeeEe---e-----------cCCCceeEEEEecCC
Q psy11524        116 -TKWQAHDGLILKVAWCSSTDLILSGGE-DCKYKASFVWDTDG-RQLYSS---L-----------THDHPISSLAWAPGG  178 (323)
Q Consensus       116 -~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~i~v~d~~~-~~~~~~---~-----------~~~~~v~~~~~~p~~  178 (323)
                       ............++++|++++|+++.. +|.+.   +++++. ..+...   .           .......++.|+|+|
T Consensus        79 ~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~---v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg  155 (345)
T PF10282_consen   79 LNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVS---VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG  155 (345)
T ss_dssp             EEEEEESSSCEEEEEECTTSSEEEEEETTTTEEE---EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS
T ss_pred             eeeeccCCCCcEEEEEecCCCEEEEEEccCCeEE---EEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC
Confidence             223334455678999999999888874 88999   999852 222211   1           123457899999999


Q ss_pred             CEEEEEeC--CeEEEEeCCCCe--ee----ecCCCCccEEEEEEcCCCCEEEEEecCc--EEEEEcC--CCce--eeeec
Q psy11524        179 DMFAVGSY--NTLRLCDKVGWS--HS----LDKPDTGSVYDLVWSNDATQIAGACANV--IHIFDIS--SSSS--SNVTA  244 (323)
Q Consensus       179 ~~l~~~~~--~~i~i~d~~~~~--~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~--i~iwd~~--~~~~--~~~~~  244 (323)
                      +++++...  |.|++|++....  +.    .........+.++|+|+++++++..+..  |.++++.  ++..  +....
T Consensus       156 ~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~  235 (345)
T PF10282_consen  156 RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS  235 (345)
T ss_dssp             SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred             CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee
Confidence            99998877  499999986432  21    2334556799999999999988877654  9999887  4432  22211


Q ss_pred             CC--C--CccceEEEEEccCCCCccceEEEEeCC-CCeEEEecccc--------cCCCCccceeEEEEeeCCCeeEeee-
Q psy11524        245 PL--S--HSHEITQLAVNQTGSLQERHVAFIDKN-RDLYLSMWSHS--------LDKPDTGSVYDLVWSSDATQIAGAC-  310 (323)
Q Consensus       245 ~~--~--~~~~v~~~~~~p~g~~~d~~l~~~~~~-~~~~~~~~~~~--------~~~~~~~~v~~~~~s~~g~~l~s~~-  310 (323)
                      ..  .  .......++++|+|    +.|.+.+.. +.+.++++...        .....+.....++++|+|++|+++. 
T Consensus       236 ~~~~~~~~~~~~~~i~ispdg----~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~  311 (345)
T PF10282_consen  236 TLPEGFTGENAPAEIAISPDG----RFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ  311 (345)
T ss_dssp             SCETTSCSSSSEEEEEE-TTS----SEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred             eccccccccCCceeEEEecCC----CEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence            11  1  11257889999999    555555433 33555555211        0111134578999999999988776 


Q ss_pred             cCCeEEEEEee
Q psy11524        311 ANGSLLLGTII  321 (323)
Q Consensus       311 ~dg~i~~~~l~  321 (323)
                      .++.|.+|++-
T Consensus       312 ~s~~v~vf~~d  322 (345)
T PF10282_consen  312 DSNTVSVFDID  322 (345)
T ss_dssp             TTTEEEEEEEE
T ss_pred             CCCeEEEEEEe
Confidence            56789999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.66  E-value=3.6e-14  Score=108.39  Aligned_cols=148  Identities=22%  Similarity=0.317  Sum_probs=105.4

Q ss_pred             EEEEECCCCCEEEEEcC---C-------CceEeeeEEeCCCCeeeEeec-CCCceeEEEEecCCCEEEEEeC--C-eEEE
Q psy11524        126 LKVAWCSSTDLILSGGE---D-------CKYKASFVWDTDGRQLYSSLT-HDHPISSLAWAPGGDMFAVGSY--N-TLRL  191 (323)
Q Consensus       126 ~~~~~~~~~~~l~~~~~---d-------~~i~~i~v~d~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~--~-~i~i  191 (323)
                      ..+.|+|+|++|+.-..   |       +... |+..+..+.....+.- ..++|.+++|+|+|+.|++...  + .+.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~-l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFE-LFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEE-EEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            46889999987665433   1       1222 3344444555555543 3457999999999999776543  4 8999


Q ss_pred             EeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEec---Cc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccce
Q psy11524        192 CDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACA---NV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERH  267 (323)
Q Consensus       192 ~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~  267 (323)
                      ||++...+..+  ....+..+.|+|+|++|++++.   .| |.+||.++.+.+.+   ..|. .+..++|+|+|    ++
T Consensus        88 yd~~~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~---~~~~-~~t~~~WsPdG----r~  157 (194)
T PF08662_consen   88 YDVKGKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST---FEHS-DATDVEWSPDG----RY  157 (194)
T ss_pred             EcCcccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeec---cccC-cEEEEEEcCCC----CE
Confidence            99986655554  3467789999999999999874   36 99999998888876   3333 47899999999    77


Q ss_pred             EEEEeC------CCCeEEEeccc
Q psy11524        268 VAFIDK------NRDLYLSMWSH  284 (323)
Q Consensus       268 l~~~~~------~~~~~~~~~~~  284 (323)
                      ++++..      ++...+|++..
T Consensus       158 ~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  158 LATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             EEEEEeccceeccccEEEEEecC
Confidence            777653      55667776643

>KOG1272|consensus

Probab=99.65  E-value=4.6e-16  Score=126.02  Aligned_cols=190  Identities=12%  Similarity=0.052  Sum_probs=163.1

Q ss_pred             CCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCeeee
Q psy11524        122 DGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSL  201 (323)
Q Consensus       122 ~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~~~~  201 (323)
                      ......+.++.+|++|+.++.-|.+.   .+|...+.+.....-...|.++.|-.+.++||++-...++|||-.+-++..
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlA---a~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHC  205 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLA---AFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHC  205 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCcccee---eeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEee
Confidence            34557889999999999999999999   999976666555556677999999999999999888899999998877776


Q ss_pred             cCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEE
Q psy11524        202 DKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLS  280 (323)
Q Consensus       202 ~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~  280 (323)
                      +..+ ..|..+.|-|..-+|++++..| ++.-|+.+|+.+..  +....+.+..++-+|-.    ..+.++..+|.+.+|
T Consensus       206 lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~--~~t~~G~~~vm~qNP~N----aVih~GhsnGtVSlW  278 (545)
T KOG1272|consen  206 LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS--IRTGAGRTDVMKQNPYN----AVIHLGHSNGTVSLW  278 (545)
T ss_pred             hhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHH--HHccCCccchhhcCCcc----ceEEEcCCCceEEec
Confidence            6644 5689999999988888888899 99999999999988  67777888889999987    889999999999999


Q ss_pred             ecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        281 MWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       281 ~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      .....    ..-.|.++|.++++.++|++++|.+.|..++||||.
T Consensus       279 SP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR  323 (545)
T KOG1272|consen  279 SPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLR  323 (545)
T ss_pred             CCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeec
Confidence            87664    223479999999999999999999999999999984

>KOG2111|consensus

Probab=99.64  E-value=7.3e-13  Score=102.83  Aligned_cols=171  Identities=13%  Similarity=0.067  Sum_probs=126.9

Q ss_pred             eEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC--CCeeeEeecC--CCceeEEEEecCC
Q psy11524        104 LVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD--GRQLYSSLTH--DHPISSLAWAPGG  178 (323)
Q Consensus       104 ~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~--~~~~~~~~~~--~~~v~~~~~~p~~  178 (323)
                      ..|.+||..+. ...-.....+|.++.++++  +|++.- .++|.   ||...  .+.+..+...  +..+.+++-+.+.
T Consensus        75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl-~~~I~---VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k  148 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVL-ENKIY---VYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK  148 (346)
T ss_pred             ceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEe-cCeEE---EEEcCCChhheeeeecccCCCceEeecCCCCc
Confidence            46889985544 3333457789999999875  555544 56788   99984  4455555432  3334333333345


Q ss_pred             CEEEEEeC--CeEEEEeCCCCee---eecCCCCccEEEEEEcCCCCEEEEEecCc--EEEEEcCCCceeeeecCCCCccc
Q psy11524        179 DMFAVGSY--NTLRLCDKVGWSH---SLDKPDTGSVYDLVWSNDATQIAGACANV--IHIFDISSSSSSNVTAPLSHSHE  251 (323)
Q Consensus       179 ~~l~~~~~--~~i~i~d~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~  251 (323)
                      .+||.-+.  |.|.|.|+.....   .....|.+.|.+++.+-+|..+|+++..|  |+|||..+|..+.+++--.....
T Consensus       149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~  228 (346)
T KOG2111|consen  149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRAD  228 (346)
T ss_pred             eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchhe
Confidence            56776666  5999999874433   67788999999999999999999999999  99999999999998544445678


Q ss_pred             eEEEEEccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        252 ITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       252 v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      +.+++|||++    ..|++.+..|++.++.+..
T Consensus       229 iy~iaFSp~~----s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  229 IYCIAFSPNS----SWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEEEeCCCc----cEEEEEcCCCeEEEEEeec
Confidence            9999999999    8888888888888877655

>KOG1240|consensus

Probab=99.64  E-value=1.3e-13  Score=124.14  Aligned_cols=250  Identities=12%  Similarity=0.057  Sum_probs=163.9

Q ss_pred             ccccccceeeec-CCCCCEEEEEEcCCC-CeEEEEeeCCeEEEEeCCCCc---------eeEeeccCCCeEEEEECCCCC
Q psy11524         67 SWPQALSLCRTL-NVSPPVYSAAWSPDS-NKVLLTQAKSLVIKPLSPNNK---------ATKWQAHDGLILKVAWCSSTD  135 (323)
Q Consensus        67 ~~~~~~~~~~~~-~~~~~v~~~~~sp~~-~~l~~~~~~~~~v~~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~  135 (323)
                      .|...+.+...+ +|...+..++.++.. .++++|+.| |+|++|+..+-         ..++.....++.++...+.++
T Consensus      1033 gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~D-GtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1033 GWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDD-GTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred             CCCccceEeehhhhccccccceeecCCCCceEEEecCC-ceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence            377666666666 588899999988765 888887666 79999997543         223444567889999999999


Q ss_pred             EEEEEcCCCceEeeeEEeCCC---Ce-----eeEee-cCCCceeEE-EEec-CCC-EEEEEeC-CeEEEEeCCCCeee--
Q psy11524        136 LILSGGEDCKYKASFVWDTDG---RQ-----LYSSL-THDHPISSL-AWAP-GGD-MFAVGSY-NTLRLCDKVGWSHS--  200 (323)
Q Consensus       136 ~l~~~~~d~~i~~i~v~d~~~---~~-----~~~~~-~~~~~v~~~-~~~p-~~~-~l~~~~~-~~i~i~d~~~~~~~--  200 (323)
                      .+|.++.||.|+   +.+++.   +.     .+... ...+.+.++ +|.. .+. .++.+.. +.|..||++.....  
T Consensus      1112 ~~Av~t~DG~v~---~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVR---VLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred             eEEEEcCCCeEE---EEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence            999999999999   888853   11     11111 122333333 4444 233 5666666 49999998854222  


Q ss_pred             -ecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCC----------CccceE
Q psy11524        201 -LDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGS----------LQERHV  268 (323)
Q Consensus       201 -~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~----------~~d~~l  268 (323)
                       ......+.|++++.+|.+.++++|+..| +.+||++-+.++... -.++..+++.+..+|-.+          +..+.+
T Consensus      1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw-~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW-EHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred             hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecc-cCcccCCcceEEeeccCCCCceEEEecccCCCce
Confidence             2223456799999999999999999999 999999998888774 233446777777766542          123445


Q ss_pred             EEEeCCCCeE---EEecccc-----cC------CCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        269 AFIDKNRDLY---LSMWSHS-----LD------KPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       269 ~~~~~~~~~~---~~~~~~~-----~~------~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      .+|+..++.+   +|.-...     ..      +.+.......++..-+..+.+|+.|..|+.||..
T Consensus      1268 s~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             eeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence            5555443321   2222110     00      0112223333444445689999999999999864

>KOG1587|consensus

Probab=99.63  E-value=1e-13  Score=119.86  Aligned_cols=233  Identities=15%  Similarity=0.123  Sum_probs=161.0

Q ss_pred             ccceeEeeEeccCCcceeeeeecccccccccee---------------eecCCCCCEEEEEEcCCCCe--EEEEeeCCeE
Q psy11524         43 YDGTVINYPISPYISVLHSYAASHSWPQALSLC---------------RTLNVSPPVYSAAWSPDSNK--VLLTQAKSLV  105 (323)
Q Consensus        43 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~v~~~~~sp~~~~--l~~~~~~~~~  105 (323)
                      .+..|.++.|+|...   ..++.|.+++..-+|               ..-.|..+++.+.|-.+-..  +++++.| |.
T Consensus       241 ~~s~v~~~~f~p~~p---~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssD-G~  316 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDP---NLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSD-GS  316 (555)
T ss_pred             cCCceeEEEeccCCc---ceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecC-Cc
Confidence            367889999999642   344454433332222               11238899999999765444  8888876 79


Q ss_pred             EEEeCCCCcee-------Eee-------ccCCCeEEEEECC-CCCEEEEEcCCCceEeeeEEeCCCCe------eeEeec
Q psy11524        106 IKPLSPNNKAT-------KWQ-------AHDGLILKVAWCS-STDLILSGGEDCKYKASFVWDTDGRQ------LYSSLT  164 (323)
Q Consensus       106 v~~~~~~~~~~-------~~~-------~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~i~v~d~~~~~------~~~~~~  164 (323)
                      |..|++.....       ...       .....+++++|.+ +...++.|+.+|.|..-.-++.+...      ......
T Consensus       317 i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~  396 (555)
T KOG1587|consen  317 ICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFIT  396 (555)
T ss_pred             EeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccc
Confidence            99997654311       111       1224678999988 45789999999999811112233222      345567


Q ss_pred             CCCceeEEEEecCCCE-EEEEeCCeEEEEeCC--CCeeeecCCCCccEEEEEEcCCC-CEEEEEecCc-EEEEEcCCCc-
Q psy11524        165 HDHPISSLAWAPGGDM-FAVGSYNTLRLCDKV--GWSHSLDKPDTGSVYDLVWSNDA-TQIAGACANV-IHIFDISSSS-  238 (323)
Q Consensus       165 ~~~~v~~~~~~p~~~~-l~~~~~~~i~i~d~~--~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~-i~iwd~~~~~-  238 (323)
                      |.++|+++.++|=+.. |+++++.+++||...  ..++..+..+...+++++|||.. ..++++..+| |.+||+.... 
T Consensus       397 h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~  476 (555)
T KOG1587|consen  397 HIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE  476 (555)
T ss_pred             cCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc
Confidence            8899999999996555 555553499999955  44555555577779999999965 4667777799 9999987543 


Q ss_pred             -eeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc
Q psy11524        239 -SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS  285 (323)
Q Consensus       239 -~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~  285 (323)
                       ++.+  ..-.......+.|++.|    ..|++++..|.+.++.+...
T Consensus       477 ~Pv~s--~~~~~~~l~~~~~s~~g----~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  477 EPVLS--QKVCSPALTRVRWSPNG----KLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             CCccc--ccccccccceeecCCCC----cEEEEecCCCcEEEEEcCch
Confidence             4443  33345667788899988    89999999999999998753

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=6.3e-13  Score=113.55  Aligned_cols=181  Identities=9%  Similarity=0.011  Sum_probs=123.3

Q ss_pred             CCEEEEEEcCCCCe-EEEEeeC--CeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEE-cCCCceEeeeEEeCCC
Q psy11524         82 PPVYSAAWSPDSNK-VLLTQAK--SLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSG-GEDCKYKASFVWDTDG  156 (323)
Q Consensus        82 ~~v~~~~~sp~~~~-l~~~~~~--~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~i~v~d~~~  156 (323)
                      +......|+|||+. +++.+..  ...|++++..+. ...+....+......|+|||+.++.. +.++. .+||++|+.+
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~-~~Iy~~dl~~  266 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQ-PDIYLYDTNT  266 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCC-cEEEEEECCC
Confidence            47889999999996 6655443  357899988765 44555566667788999999877654 33433 2344889877


Q ss_pred             CeeeEeecCCCceeEEEEecCCCEEEEEeC--C--eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecC-----
Q psy11524        157 RQLYSSLTHDHPISSLAWAPGGDMFAVGSY--N--TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN-----  227 (323)
Q Consensus       157 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----  227 (323)
                      .....+...........|+|||+.|+..++  +  .|+++|+.+............  ...|+|||++|+..+..     
T Consensus       267 g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~  344 (419)
T PRK04043        267 KTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEF  344 (419)
T ss_pred             CcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCccc
Confidence            777777665554456789999999888876  3  788999886544333222212  24899999988876542     


Q ss_pred             ----c-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeC
Q psy11524        228 ----V-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDK  273 (323)
Q Consensus       228 ----~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~  273 (323)
                          . |.+.|+.+++...   +... .......|+|||    +.|+....
T Consensus       345 ~~~~~~I~v~d~~~g~~~~---LT~~-~~~~~p~~SPDG----~~I~f~~~  387 (419)
T PRK04043        345 GKNTFNLYLISTNSDYIRR---LTAN-GVNQFPRFSSDG----GSIMFIKY  387 (419)
T ss_pred             CCCCcEEEEEECCCCCeEE---CCCC-CCcCCeEECCCC----CEEEEEEc
Confidence                4 8888988886543   2332 233468999999    66665543

>KOG1517|consensus

Probab=99.62  E-value=1.4e-13  Score=122.23  Aligned_cols=245  Identities=17%  Similarity=0.237  Sum_probs=161.2

Q ss_pred             cc-cccceeeecC----CCCCEEEEEEcC--CCCeEEEEeeCCeEEEEeCCCC----c---eeEe---ec----cCCCeE
Q psy11524         68 WP-QALSLCRTLN----VSPPVYSAAWSP--DSNKVLLTQAKSLVIKPLSPNN----K---ATKW---QA----HDGLIL  126 (323)
Q Consensus        68 ~~-~~~~~~~~~~----~~~~v~~~~~sp--~~~~l~~~~~~~~~v~~~~~~~----~---~~~~---~~----~~~~v~  126 (323)
                      || ...+++..+.    ....|+.+.+-.  |...+++++.| |.|++|+.-.    +   +..+   .+    ..+.=.
T Consensus      1091 wd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d-GvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~ 1169 (1387)
T KOG1517|consen 1091 WDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSD-GVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGL 1169 (1387)
T ss_pred             EecccCceeccccCCCCCCCccceeeeecccchhheeeeccC-ceEEEecccccccCCceeEEeeccccccCccCCCCCe
Confidence            55 3444555554    356899998754  44566666666 7999997432    1   1111   11    111113


Q ss_pred             EEEECCCCCEEEEEcCCCceEeeeEEeCCCCe-eeEeec-CCCceeEEEEec-CCCEEEEEeCC-eEEEEeCCCC----e
Q psy11524        127 KVAWCSSTDLILSGGEDCKYKASFVWDTDGRQ-LYSSLT-HDHPISSLAWAP-GGDMFAVGSYN-TLRLCDKVGW----S  198 (323)
Q Consensus       127 ~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~-~~~~~~-~~~~v~~~~~~p-~~~~l~~~~~~-~i~i~d~~~~----~  198 (323)
                      -+.|.....+|++++.-..|+   |||...+. +..+.. ....++++.-+- .|+.+++|..| .+++||.+..    .
T Consensus      1170 v~dWqQ~~G~Ll~tGd~r~IR---IWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~ 1246 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIR---IWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSL 1246 (1387)
T ss_pred             eeehhhhCCeEEecCCeeEEE---EEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccc
Confidence            467777666676666677788   99996443 344432 334566654433 47888888886 9999997743    3


Q ss_pred             eeecCCCCcc--EEEEEEcCCCCE-EEEEecCc-EEEEEcCCCceeeeecCCCC---ccceEEEEEccCCCCccceEEEE
Q psy11524        199 HSLDKPDTGS--VYDLVWSNDATQ-IAGACANV-IHIFDISSSSSSNVTAPLSH---SHEITQLAVNQTGSLQERHVAFI  271 (323)
Q Consensus       199 ~~~~~~~~~~--v~~~~~~~~~~~-l~~~~~d~-i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~~p~g~~~d~~l~~~  271 (323)
                      +.....|...  |..+.+.+.|-. |++|+.+| |++||++............|   ++..+++..+++.    ..++.+
T Consensus      1247 v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~ha----piiAsG 1322 (1387)
T KOG1517|consen 1247 VCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHA----PIIASG 1322 (1387)
T ss_pred             ceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCC----Ceeeec
Confidence            4456678776  999999997654 99999999 99999997522222112222   2358999999987    455555


Q ss_pred             eCCCCeEEEecccc----------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        272 DKNRDLYLSMWSHS----------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       272 ~~~~~~~~~~~~~~----------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +. +.+.+|++...          +.....+.+.+++|+|-.-.||+|..|..|.||...
T Consensus      1323 s~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1323 SA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred             Cc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence            44 45555555442          333335778999999999999999999999999864

>KOG1310|consensus

Probab=99.62  E-value=1.9e-14  Score=119.25  Aligned_cols=230  Identities=16%  Similarity=0.153  Sum_probs=152.1

Q ss_pred             ccceeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeE-eeccCCCeEEEEECCC--CCEEEEEcCCC
Q psy11524         71 ALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATK-WQAHDGLILKVAWCSS--TDLILSGGEDC  144 (323)
Q Consensus        71 ~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~-~~~~~~~v~~~~~~~~--~~~l~~~~~d~  144 (323)
                      .+.+.+++ +|.+-|+|+.|+.+|.+|++|++| -.+.+||....  ++. -++|...|.++.|-|.  .+.+++|..|.
T Consensus        39 rL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD-~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk  117 (758)
T KOG1310|consen   39 RLDLEAELTGHTGCVNCLEWNADGELLASGSDD-TRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK  117 (758)
T ss_pred             hcchhhhhccccceecceeecCCCCEEeecCCc-ceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence            34444555 399999999999999999998777 49999998754  333 3689999999999994  56899999999


Q ss_pred             ceEeeeEEeCCC-----------CeeeEeecCCCceeEEEEecCC-CEEEEEeCC-eEEEEeCCCC--eeeec-------
Q psy11524        145 KYKASFVWDTDG-----------RQLYSSLTHDHPISSLAWAPGG-DMFAVGSYN-TLRLCDKVGW--SHSLD-------  202 (323)
Q Consensus       145 ~i~~i~v~d~~~-----------~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~~-~i~i~d~~~~--~~~~~-------  202 (323)
                      .|+   ++|++.           .....+..|...|..++-.|++ +.|.++++| +++-+|++..  +..-.       
T Consensus       118 ~i~---lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~  194 (758)
T KOG1310|consen  118 LIK---LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILV  194 (758)
T ss_pred             eEE---EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHH
Confidence            999   999952           2234456688889999999987 778899996 9999998752  11110       


Q ss_pred             --CCCCccEEEEEEcCC-CCEEEEEecCc-EEEEEcCCCc-eeeeec--CCCCccceEEE-EEccCCCCccceEEEEeCC
Q psy11524        203 --KPDTGSVYDLVWSND-ATQIAGACANV-IHIFDISSSS-SSNVTA--PLSHSHEITQL-AVNQTGSLQERHVAFIDKN  274 (323)
Q Consensus       203 --~~~~~~v~~~~~~~~-~~~l~~~~~d~-i~iwd~~~~~-~~~~~~--~~~~~~~v~~~-~~~p~g~~~d~~l~~~~~~  274 (323)
                        ...--...++..+|. ..+|++|+.|- .++||.+... ....-.  .........++ -|+|..      +  .+.+
T Consensus       195 ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~h------l--kn~~  266 (758)
T KOG1310|consen  195 NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGH------L--KNSQ  266 (758)
T ss_pred             HhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcc------c--cCcc
Confidence              111124678999994 56888899898 9999954321 111100  00011122222 234432      1  1222


Q ss_pred             CCeEEEecccccCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        275 RDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      +....+          ...++-++|+|+|..|+..-.-..|+++++.+
T Consensus       267 gn~~~~----------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~  304 (758)
T KOG1310|consen  267 GNLDRY----------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE  304 (758)
T ss_pred             cccccc----------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence            211100          22356788899987666555556688887753

>KOG0649|consensus

Probab=99.62  E-value=4.5e-13  Score=100.30  Aligned_cols=228  Identities=15%  Similarity=0.107  Sum_probs=145.5

Q ss_pred             eeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeC--CCCc--------eeEeeccC-----CCeEEEEECCCCCEEE
Q psy11524         74 LCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLS--PNNK--------ATKWQAHD-----GLILKVAWCSSTDLIL  138 (323)
Q Consensus        74 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~--~~~~--------~~~~~~~~-----~~v~~~~~~~~~~~l~  138 (323)
                      +.....|..+++.++|.  ..+|++++.  |.|+-|.  ...+        ....+.|.     ..|+++-..|..+-++
T Consensus        55 iv~eqahdgpiy~~~f~--d~~Lls~gd--G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~  130 (325)
T KOG0649|consen   55 IVPEQAHDGPIYYLAFH--DDFLLSGGD--GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL  130 (325)
T ss_pred             eeeccccCCCeeeeeee--hhheeeccC--ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE
Confidence            33444599999999998  456777654  5666553  2211        11112222     3588999999887777


Q ss_pred             EEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-eeeecCC---------C-
Q psy11524        139 SGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-SHSLDKP---------D-  205 (323)
Q Consensus       139 ~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~---------~-  205 (323)
                      +++.|+.++   .||++ ++....+.+|...+.++.--.....+++|++| ++++||.++. ....+..         | 
T Consensus       131 ~AgGD~~~y---~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~  207 (325)
T KOG0649|consen  131 FAGGDGVIY---QVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW  207 (325)
T ss_pred             EecCCeEEE---EEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence            788899999   99996 77778899999999999985555578899986 9999998854 3333221         2 


Q ss_pred             CccEEEEEEcCCCCEEEEEecCcEEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc
Q psy11524        206 TGSVYDLVWSNDATQIAGACANVIHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS  285 (323)
Q Consensus       206 ~~~v~~~~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~  285 (323)
                      ..+|.+++.+  ..+|++|+...+.+|.+++.++...+   ....++..+.|..+      .+.+......+.-|.+...
T Consensus       208 g~wigala~~--edWlvCGgGp~lslwhLrsse~t~vf---pipa~v~~v~F~~d------~vl~~G~g~~v~~~~l~Gv  276 (325)
T KOG0649|consen  208 GKWIGALAVN--EDWLVCGGGPKLSLWHLRSSESTCVF---PIPARVHLVDFVDD------CVLIGGEGNHVQSYTLNGV  276 (325)
T ss_pred             CceeEEEecc--CceEEecCCCceeEEeccCCCceEEE---ecccceeEeeeecc------eEEEeccccceeeeeeccE
Confidence            2345666654  44787776555999999999988874   34456777777654      3333333334444444332


Q ss_pred             ---cCCCCccceeEEEEeeC-CCeeEeeecCCeEEEEE
Q psy11524        286 ---LDKPDTGSVYDLVWSSD-ATQIAGACANGSLLLGT  319 (323)
Q Consensus       286 ---~~~~~~~~v~~~~~s~~-g~~l~s~~~dg~i~~~~  319 (323)
                         ..+......++.+|+-. -++|-.++....+.+++
T Consensus       277 l~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  277 LQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK  314 (325)
T ss_pred             EEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence               11111222334444322 24666677777776653

>KOG0322|consensus

Probab=99.61  E-value=2.6e-14  Score=107.97  Aligned_cols=150  Identities=18%  Similarity=0.166  Sum_probs=113.6

Q ss_pred             CeEEEEECC-CCC--EEEEEcCCCceEeeeEEeCCC-----------CeeeEeecCCCceeEEEEecCCCEEEEEeC-Ce
Q psy11524        124 LILKVAWCS-STD--LILSGGEDCKYKASFVWDTDG-----------RQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NT  188 (323)
Q Consensus       124 ~v~~~~~~~-~~~--~l~~~~~d~~i~~i~v~d~~~-----------~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~  188 (323)
                      .+.+..+.. +++  ++++|-++|.+.   +||+..           +.......|..+|.++.|.+.-..=++|+. +.
T Consensus       152 svmc~~~~~~c~s~~lllaGyEsghvv---~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk  228 (323)
T KOG0322|consen  152 SVMCQDKDHACGSTFLLLAGYESGHVV---IWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK  228 (323)
T ss_pred             ceeeeeccccccceEEEEEeccCCeEE---EEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence            344444433 232  466778899999   999964           233344568899999999875444456666 48


Q ss_pred             EEEEeCCC--Ceeee---cCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCC
Q psy11524        189 LRLCDKVG--WSHSL---DKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGS  262 (323)
Q Consensus       189 i~i~d~~~--~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~  262 (323)
                      +..|.+..  ...+.   ..-....+..+..-||++.+|+++.|+ |++|..++.+++..  +.-|...|.+++|+|+. 
T Consensus       229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAV--LkyHsagvn~vAfspd~-  305 (323)
T KOG0322|consen  229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAV--LKYHSAGVNAVAFSPDC-  305 (323)
T ss_pred             ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhh--hhhhhcceeEEEeCCCC-
Confidence            88888752  22221   111234588899999999999999999 99999999999998  78899999999999998 


Q ss_pred             CccceEEEEeCCCCeEEEec
Q psy11524        263 LQERHVAFIDKNRDLYLSMW  282 (323)
Q Consensus       263 ~~d~~l~~~~~~~~~~~~~~  282 (323)
                         +.++..+.|+.+.+|++
T Consensus       306 ---~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  306 ---ELMAAASKDARISLWKL  322 (323)
T ss_pred             ---chhhhccCCceEEeeec
Confidence               78899999999999875

>KOG2139|consensus

Probab=99.60  E-value=2.4e-13  Score=107.26  Aligned_cols=178  Identities=17%  Similarity=0.166  Sum_probs=133.1

Q ss_pred             CCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeec-CCCceeEEEEecC-CCEEEEEeCCeEEEEeCCCC---
Q psy11524        123 GLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLT-HDHPISSLAWAPG-GDMFAVGSYNTLRLCDKVGW---  197 (323)
Q Consensus       123 ~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~-~~~~v~~~~~~p~-~~~l~~~~~~~i~i~d~~~~---  197 (323)
                      -.+..++|++.-..+|++..|-.|+   +|+-...+...++. ....|++++|-|. +..|++|+...|.+|.....   
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVr---iy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~  175 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVR---IYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNA  175 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEE---EeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccccc
Confidence            4567899999777788999999999   99987655555543 4567999999995 55688888888999985421   


Q ss_pred             --eee--------ec-CCCCccEEEEEEcCCCCEEEEEecCc--EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCc
Q psy11524        198 --SHS--------LD-KPDTGSVYDLVWSNDATQIAGACANV--IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQ  264 (323)
Q Consensus       198 --~~~--------~~-~~~~~~v~~~~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~  264 (323)
                        .+.        .+ .....+|+++.|.+||..+++++.+.  |.|||..++..+..  .....+.++-+.||||+   
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL--~~~glgg~slLkwSPdg---  250 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL--IPKGLGGFSLLKWSPDG---  250 (445)
T ss_pred             ccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc--cccCCCceeeEEEcCCC---
Confidence              111        11 11225799999999999999999876  99999999887764  33455678899999999   


Q ss_pred             cceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEee
Q psy11524        265 ERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGA  309 (323)
Q Consensus       265 d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~  309 (323)
                       ..+.....|+..++|+....    ....-.+.|....|+|+|++|.-+
T Consensus       251 -d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~  298 (445)
T KOG2139|consen  251 -DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFA  298 (445)
T ss_pred             -CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEE
Confidence             77777788888888854432    111224689999999999976633

>KOG1310|consensus

Probab=99.59  E-value=1.1e-14  Score=120.59  Aligned_cols=205  Identities=16%  Similarity=0.177  Sum_probs=145.8

Q ss_pred             hcceeeeeeEeecccceeEeeEeccCCcceeeeeeccccccccceee--------ec--CCCCCEEEEEEcC--CCCeEE
Q psy11524         30 VLRFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCR--------TL--NVSPPVYSAAWSP--DSNKVL   97 (323)
Q Consensus        30 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~~~~v~~~~~sp--~~~~l~   97 (323)
                      -.+.+...+.+.||++.|+++.|+.+|    .++++|+-|....+|.        .+  +|...|.++.|-|  +.+.++
T Consensus        36 ~lrrL~lE~eL~GH~GCVN~LeWn~dG----~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~  111 (758)
T KOG1310|consen   36 WLRRLDLEAELTGHTGCVNCLEWNADG----ELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVL  111 (758)
T ss_pred             HHhhcchhhhhccccceecceeecCCC----CEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEE
Confidence            345667778899999999999999999    6777776554444443        22  3889999999999  345566


Q ss_pred             EEeeCCeEEEEeCCCCc------------eeEeeccCCCeEEEEECCCC-CEEEEEcCCCceEeeeEEeCCCC--ee---
Q psy11524         98 LTQAKSLVIKPLSPNNK------------ATKWQAHDGLILKVAWCSST-DLILSGGEDCKYKASFVWDTDGR--QL---  159 (323)
Q Consensus        98 ~~~~~~~~v~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~i~v~d~~~~--~~---  159 (323)
                      +|+.| ..|+++|+...            ...+..|...|..++-.|++ ..+-++++||+|+   -+|++..  +.   
T Consensus       112 sgAgD-k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtir---QyDiREph~c~p~~  187 (758)
T KOG1310|consen  112 SGAGD-KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIR---QYDIREPHVCNPDE  187 (758)
T ss_pred             eccCc-ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCccee---eecccCCccCCccc
Confidence            66666 59999998631            34567789999999999987 7899999999999   9999531  11   


Q ss_pred             ------eEeecCCCceeEEEEecC-CCEEEEEeCC-eEEEEeCCCC--------e-----------eeec-CCCC-----
Q psy11524        160 ------YSSLTHDHPISSLAWAPG-GDMFAVGSYN-TLRLCDKVGW--------S-----------HSLD-KPDT-----  206 (323)
Q Consensus       160 ------~~~~~~~~~v~~~~~~p~-~~~l~~~~~~-~i~i~d~~~~--------~-----------~~~~-~~~~-----  206 (323)
                            ..+...--...++..+|. ..+|++|+.| ..++||.+..        .           +..+ .+|-     
T Consensus       188 ~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~g  267 (758)
T KOG1310|consen  188 DCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQG  267 (758)
T ss_pred             cccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccc
Confidence                  111222245678999995 6678888888 9999994311        0           1100 1111     


Q ss_pred             ------ccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeee
Q psy11524        207 ------GSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNV  242 (323)
Q Consensus       207 ------~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~  242 (323)
                            ..++.+.|+|+|.-|++.-... |+++|+..++....
T Consensus       268 n~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~  310 (758)
T KOG1310|consen  268 NLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP  310 (758)
T ss_pred             ccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence                  1156788999998777766555 99999988775543

>KOG2111|consensus

Probab=99.58  E-value=2.6e-12  Score=99.79  Aligned_cols=227  Identities=15%  Similarity=0.188  Sum_probs=147.2

Q ss_pred             CCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCC--ceeEeeccCCCeEEEEECCCCCEEEEEcCC-------CceEeeeEE
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN--KATKWQAHDGLILKVAWCSSTDLILSGGED-------CKYKASFVW  152 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~~i~v~  152 (323)
                      ....+++|+.|..-++++.+.+  .++|+.+.  +.....-+.+.+.-+...-..++||..+..       .++.   ||
T Consensus         6 ~~~lsvs~NQD~ScFava~~~G--friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkvi---IW   80 (346)
T KOG2111|consen    6 PKTLSVSFNQDHSCFAVATDTG--FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVI---IW   80 (346)
T ss_pred             CceeEEEEccCCceEEEEecCc--eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEE---EE
Confidence            3455699999999999887665  45554432  211111122222222222234555544322       3566   99


Q ss_pred             eC-CCCeeeEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCC--eeeecCC--CCccEEEEEEcCCCCEEEEEec-
Q psy11524        153 DT-DGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGW--SHSLDKP--DTGSVYDLVWSNDATQIAGACA-  226 (323)
Q Consensus       153 d~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~--~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-  226 (323)
                      |= ..+++..+. ...+|.++.++++  .+++.-.+.|++|.....  .+..+..  .+....+++-+.+..+||.-+. 
T Consensus        81 DD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k  157 (346)
T KOG2111|consen   81 DDLKERCIIELS-FNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFK  157 (346)
T ss_pred             ecccCcEEEEEE-eccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCc
Confidence            95 345555444 6788999999854  688888889999997633  2222221  2233444433334445655443 


Q ss_pred             Cc-EEEEEcCCCcee--eeecCCCCccceEEEEEccCCCCccceEEEEeCCCC-eEEEecccc-----cCCC-CccceeE
Q psy11524        227 NV-IHIFDISSSSSS--NVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRD-LYLSMWSHS-----LDKP-DTGSVYD  296 (323)
Q Consensus       227 d~-i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~-~~~~~~~~~-----~~~~-~~~~v~~  296 (323)
                      -| |+|-|+...+.-  ..  +..|...|.+++.+.+|    ..|+..+..|+ +++|+...+     +.++ ....|.+
T Consensus       158 ~GqvQi~dL~~~~~~~p~~--I~AH~s~Iacv~Ln~~G----t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~  231 (346)
T KOG2111|consen  158 TGQVQIVDLASTKPNAPSI--INAHDSDIACVALNLQG----TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYC  231 (346)
T ss_pred             cceEEEEEhhhcCcCCceE--EEcccCceeEEEEcCCc----cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEE
Confidence            46 999999876652  33  67899999999999999    77888777776 567777665     1111 2467999


Q ss_pred             EEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        297 LVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       297 ~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      ++|||++.+||++++.|+++|+.|.+
T Consensus       232 iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  232 IAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEeCCCccEEEEEcCCCeEEEEEeec
Confidence            99999999999999999999999865

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=9.4e-12  Score=106.42  Aligned_cols=196  Identities=12%  Similarity=0.023  Sum_probs=126.1

Q ss_pred             EEEEeCCCCc-eeEeeccCCCeEEEEECCCCCE-EEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEE
Q psy11524        105 VIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDL-ILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFA  182 (323)
Q Consensus       105 ~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  182 (323)
                      .|++-|..+. .+.+... +......|+|||+. ++..+.++.-.+|+++|+.+.....+....+......|+|||+.++
T Consensus       170 ~l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la  248 (419)
T PRK04043        170 NIVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLL  248 (419)
T ss_pred             eEEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEE
Confidence            6777666555 4444444 37789999999985 6655554322355599998777677666666677789999998877


Q ss_pred             EEeC---C-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecC-c---EEEEEcCCCceeeeecCCCCccceEE
Q psy11524        183 VGSY---N-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN-V---IHIFDISSSSSSNVTAPLSHSHEITQ  254 (323)
Q Consensus       183 ~~~~---~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~~~~~~~~v~~  254 (323)
                      ....   + .|+++|+.+.....+..+........|+|||+.|+..+.. +   |++.|+.+++..+.. ..+.  .  .
T Consensus       249 ~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt-~~g~--~--~  323 (419)
T PRK04043        249 LTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV-FHGK--N--N  323 (419)
T ss_pred             EEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc-cCCC--c--C
Confidence            6544   2 7999998766555554444444567899999988877653 2   888898887764431 2221  1  2


Q ss_pred             EEEccCCCCccceEEEEeCC---------CCeEEEecccc---cCCCCccceeEEEEeeCCCeeEeeec
Q psy11524        255 LAVNQTGSLQERHVAFIDKN---------RDLYLSMWSHS---LDKPDTGSVYDLVWSSDATQIAGACA  311 (323)
Q Consensus       255 ~~~~p~g~~~d~~l~~~~~~---------~~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~  311 (323)
                      ..|+|+|    +.|+.....         ..+.+.++...   .... ........|+|||+.|+..+.
T Consensus       324 ~~~SPDG----~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~-~~~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        324 SSVSTYK----NYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA-NGVNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             ceECCCC----CEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC-CCCcCCeEECCCCCEEEEEEc
Confidence            4899999    555554332         13455555443   1111 123346899999997775543

>KOG1334|consensus

Probab=99.57  E-value=6.1e-14  Score=114.57  Aligned_cols=275  Identities=15%  Similarity=0.127  Sum_probs=193.3

Q ss_pred             eeeeeeEeecccceeEeeEeccCCcceeeeeeccccccccceeee--------c--CCCCCEEEEEEcC--CCCeEEEEe
Q psy11524         33 FVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRT--------L--NVSPPVYSAAWSP--DSNKVLLTQ  100 (323)
Q Consensus        33 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--~~~~~v~~~~~sp--~~~~l~~~~  100 (323)
                      .+.....|.+|.++|+.+.|...|    ..+++++-|...-+|.-        +  .|...|..-.|-|  +.+.+++++
T Consensus       131 r~~l~~kL~~H~GcVntV~FN~~G----d~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s  206 (559)
T KOG1334|consen  131 RLRLQKKLNKHKGCVNTVHFNQRG----DVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS  206 (559)
T ss_pred             HhhhhhcccCCCCccceeeecccC----ceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecc
Confidence            334556789999999999999999    56677764444444321        1  3788888888887  345677776


Q ss_pred             eCCeEEEEeCCCC--c---eeEeeccCCCeEEEEECCCC-CEEEEEcCCCceEeeeEEeCC-CC---eeeEeecCCC---
Q psy11524        101 AKSLVIKPLSPNN--K---ATKWQAHDGLILKVAWCSST-DLILSGGEDCKYKASFVWDTD-GR---QLYSSLTHDH---  167 (323)
Q Consensus       101 ~~~~~v~~~~~~~--~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~i~v~d~~-~~---~~~~~~~~~~---  167 (323)
                      .+ |.+++-....  .   ...+..|.++|..++.-|+. ..|.+++.|+.+.   -.|++ +.   .......+..   
T Consensus       207 ~d-gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~---~~Dlr~~~pa~~~~cr~~~~~~~v  282 (559)
T KOG1334|consen  207 RD-GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVF---HIDLRQDVPAEKFVCREADEKERV  282 (559)
T ss_pred             cc-CceeeeeeccccceecceecccccCccceeeecCCCCCccccccccccee---eeeeccCCccceeeeeccCCccce
Confidence            66 5777654322  1   45667899999999999965 5789999999999   88884 21   2222222333   


Q ss_pred             ceeEEEEecCCC-EEEEEeCC-eEEEEeCCCC--e-----eeecC------CCCccEEEEEEcCCCCEEEEEecCc-EEE
Q psy11524        168 PISSLAWAPGGD-MFAVGSYN-TLRLCDKVGW--S-----HSLDK------PDTGSVYDLVWSNDATQIAGACANV-IHI  231 (323)
Q Consensus       168 ~v~~~~~~p~~~-~l~~~~~~-~i~i~d~~~~--~-----~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~-i~i  231 (323)
                      ....++.+|... .+++++.+ .+++||.+.-  .     +..+.      .....|++++|+.++.-|++...|- |++
T Consensus       283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL  362 (559)
T KOG1334|consen  283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYL  362 (559)
T ss_pred             eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEE
Confidence            577899999654 78888887 9999997531  1     11111      2234699999998877777777777 999


Q ss_pred             EEcCC--C----------ceeeeecCCCCc--cceEEEEE-ccCCCCccceEEEEeCCCCeEEEecccc----cCCCCcc
Q psy11524        232 FDISS--S----------SSSNVTAPLSHS--HEITQLAV-NQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTG  292 (323)
Q Consensus       232 wd~~~--~----------~~~~~~~~~~~~--~~v~~~~~-~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~  292 (323)
                      +.-..  |          ..+.. .+.+|.  ..|..+-| -|..    .+|..++.-|.+.+|+-.++    .+.+...
T Consensus       363 F~~~~~~G~~p~~~s~~~~~~k~-vYKGHrN~~TVKgVNFfGPrs----EyVvSGSDCGhIFiW~K~t~eii~~MegDr~  437 (559)
T KOG1334|consen  363 FNKSMGDGSEPDPSSPREQYVKR-VYKGHRNSRTVKGVNFFGPRS----EYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH  437 (559)
T ss_pred             eccccccCCCCCCCcchhhccch-hhcccccccccceeeeccCcc----ceEEecCccceEEEEecchhHHHHHhhcccc
Confidence            95332  2          11111 034553  35666655 5555    89999999999999998776    4444445


Q ss_pred             ceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        293 SVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       293 ~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      -|+|+.=+|--..||+++-|..|+||.-
T Consensus       438 VVNCLEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  438 VVNCLEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             eEeccCCCCCCchhhccCCccceeeecC
Confidence            8999999999999999999999999974

>KOG2321|consensus

Probab=99.56  E-value=6.4e-13  Score=110.85  Aligned_cols=170  Identities=14%  Similarity=0.200  Sum_probs=128.1

Q ss_pred             EEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCe-eeEe------ecCCC-----cee
Q psy11524        105 VIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQ-LYSS------LTHDH-----PIS  170 (323)
Q Consensus       105 ~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~-~~~~------~~~~~-----~v~  170 (323)
                      .|+-+++.++  +..+....+.++++..++-..+|++|+.+|.|.   .||.+.+. +..+      ..+.+     .|+
T Consensus       156 evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VE---fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svT  232 (703)
T KOG2321|consen  156 EVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVE---FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVT  232 (703)
T ss_pred             ceEEEEccccccccccccccccceeeeecCccceEEecccCceEE---EecchhhhhheeeecccccCCCccccccCcce
Confidence            4666666655  556666778999999999889999999999999   99996332 2222      22333     499


Q ss_pred             EEEEecCCCEEEEEeC-CeEEEEeCCCCeeeecCCC--CccEEEEEEcCCCCEEEEEecCc--EEEEEcCCCceeeeecC
Q psy11524        171 SLAWAPGGDMFAVGSY-NTLRLCDKVGWSHSLDKPD--TGSVYDLVWSNDATQIAGACANV--IHIFDISSSSSSNVTAP  245 (323)
Q Consensus       171 ~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~  245 (323)
                      ++.|+.+|-.+++|+. |.+.|||++.........|  .-+|..+.|.+.+..=...+.|.  ++|||-.+|++...   
T Consensus       233 al~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~as---  309 (703)
T KOG2321|consen  233 ALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMAS---  309 (703)
T ss_pred             EEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceee---
Confidence            9999999999999999 6999999997654444444  45788999987533222233344  99999999999886   


Q ss_pred             CCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        246 LSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       246 ~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      ......+..+++-|++    +.+.+...++.+..+-+..
T Consensus       310 iEpt~~lND~C~~p~s----Gm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  310 IEPTSDLNDFCFVPGS----GMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             ccccCCcCceeeecCC----ceEEEecCCCcceeEEccc
Confidence            3445569999999998    9999999888877776655

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.56  E-value=1.4e-11  Score=100.97  Aligned_cols=163  Identities=18%  Similarity=0.186  Sum_probs=128.2

Q ss_pred             CCCeEEEEeeCCeEEEEeCCCCceeEeeccCCCeEEEEECCCCCEEEEEcCCC-ceEeeeEEeCCCCeeeEeecCCCcee
Q psy11524         92 DSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDC-KYKASFVWDTDGRQLYSSLTHDHPIS  170 (323)
Q Consensus        92 ~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~i~v~d~~~~~~~~~~~~~~~v~  170 (323)
                      +|.+++..+.  |...+.+........-++.+.|.-..+.-+++-++.|..|| .+-   |+|.++.++..+...-+.|.
T Consensus       331 ~Gd~ia~VSR--GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~---iyd~~~~e~kr~e~~lg~I~  405 (668)
T COG4946         331 NGDYIALVSR--GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLG---IYDKDGGEVKRIEKDLGNIE  405 (668)
T ss_pred             CCcEEEEEec--CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEE---EEecCCceEEEeeCCccceE
Confidence            6778887754  46777776666444557888898888888888899999998 888   99999999999998899999


Q ss_pred             EEEEecCCCEEEEEeCC-eEEEEeCCCCeeee-cCCCCccEEEEEEcCCCCEEEEEecCc-----EEEEEcCCCceeeee
Q psy11524        171 SLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSL-DKPDTGSVYDLVWSNDATQIAGACANV-----IHIFDISSSSSSNVT  243 (323)
Q Consensus       171 ~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~-----i~iwd~~~~~~~~~~  243 (323)
                      ++..+|+|++++++.+. .+.+.|+.+...+. .+...+-|+.++|+|+++++|-+--++     |+++|+..++.... 
T Consensus       406 av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v-  484 (668)
T COG4946         406 AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV-  484 (668)
T ss_pred             EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe-
Confidence            99999999999988886 99999998665553 444567799999999999999876654     89999998887664 


Q ss_pred             cCCCCccceEEEEEccCCC
Q psy11524        244 APLSHSHEITQLAVNQTGS  262 (323)
Q Consensus       244 ~~~~~~~~v~~~~~~p~g~  262 (323)
                        ....+.-.+.+|.|+++
T Consensus       485 --TT~ta~DfsPaFD~d~r  501 (668)
T COG4946         485 --TTPTAYDFSPAFDPDGR  501 (668)
T ss_pred             --cCCcccccCcccCCCCc
Confidence              22333334456666665

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.55  E-value=1.8e-11  Score=113.65  Aligned_cols=271  Identities=15%  Similarity=0.256  Sum_probs=176.8

Q ss_pred             cceeEeeEeccCCcceeeeeeccc---c----ccccceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCC---
Q psy11524         44 DGTVINYPISPYISVLHSYAASHS---W----PQALSLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPN---  112 (323)
Q Consensus        44 ~~~v~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~---  112 (323)
                      .+.|.++.+-++...+...+++|.   .    +.....+...+ -...|.+++||||+..|+.+..++ .+.+....   
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~-~l~~mt~~fd~  153 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEG-NLLLMTRDFDP  153 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCC-EEEEEeccceE
Confidence            467888888888777766666662   1    22222223332 478999999999999999887764 44443211   


Q ss_pred             ----------------------CceeEeec------------------------cCCCeEEEEECCCCCEEEEEcC---C
Q psy11524        113 ----------------------NKATKWQA------------------------HDGLILKVAWCSSTDLILSGGE---D  143 (323)
Q Consensus       113 ----------------------~~~~~~~~------------------------~~~~v~~~~~~~~~~~l~~~~~---d  143 (323)
                                            ++..++.+                        ....-..++|..||.++|+.+-   .
T Consensus       154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~  233 (928)
T PF04762_consen  154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPET  233 (928)
T ss_pred             EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCC
Confidence                                  00001100                        2224457899999999998875   3


Q ss_pred             CceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC--C--eEEEEeCCCCeee---ec-CCCCccEEEEEEc
Q psy11524        144 CKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY--N--TLRLCDKVGWSHS---LD-KPDTGSVYDLVWS  215 (323)
Q Consensus       144 ~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--~--~i~i~d~~~~~~~---~~-~~~~~~v~~~~~~  215 (323)
                      +..+.+.||+-+|.....-+.-.+--.+++|.|.|++||+...  +  .|.+|..+|....   .. ......|..+.|+
T Consensus       234 ~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn  313 (928)
T PF04762_consen  234 GSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWN  313 (928)
T ss_pred             CceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEEC
Confidence            3244455999987665555555555567899999999999887  3  7888887765332   11 2345679999999


Q ss_pred             CCCCEEEEEecCcEEEEEcCCCcee--eeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEe------------
Q psy11524        216 NDATQIAGACANVIHIFDISSSSSS--NVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSM------------  281 (323)
Q Consensus       216 ~~~~~l~~~~~d~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~------------  281 (323)
                      +|+..||....|.|.+|-..+....  +++.+. ....+..+.|+|...   ..+.++..++.+..++            
T Consensus       314 ~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~-~~~~~~~~~Wdpe~p---~~L~v~t~~g~~~~~~~~~~v~~s~~~~  389 (928)
T PF04762_consen  314 SDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFS-SSESVNFVKWDPEKP---LRLHVLTSNGQYEIYDFAWDVSRSPGSS  389 (928)
T ss_pred             CCCCEEEEEecCCceEEEeeCCEEEEEEEEEcc-CCCCCCceEECCCCC---CEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence            9999999988666999998776522  222122 223344588888653   4444444433332211            


Q ss_pred             -------------------cccc---------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        282 -------------------WSHS---------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       282 -------------------~~~~---------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                                         +...         .... ...|.+++|++++..+++-..||.|.+|..
T Consensus       390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~-~~~v~~vaf~~~~~~~avl~~d~~l~~~~~  455 (928)
T PF04762_consen  390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL-PSPVNDVAFSPSNSRFAVLTSDGSLSIYEW  455 (928)
T ss_pred             ccCceEEEEEeCCeEEEecccccCCCchHhceEEcC-CCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence                               1111         1112 478999999999988999999999999985

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.55  E-value=1.9e-11  Score=102.73  Aligned_cols=272  Identities=11%  Similarity=0.066  Sum_probs=155.1

Q ss_pred             EeecccceeEeeEeccCCcceeeeeecc---ccc-cccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc
Q psy11524         39 TIRRYDGTVINYPISPYISVLHSYAASH---SWP-QALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK  114 (323)
Q Consensus        39 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~  114 (323)
                      .+.........+.|+|||+.++....++   .+| .+.++.+++.......++++|+||++++++....+.+.++|..+.
T Consensus        31 ~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl  110 (369)
T PF02239_consen   31 RIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL  110 (369)
T ss_dssp             EEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT-
T ss_pred             EEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccc
Confidence            3443333445678999998665543333   134 455667777778889999999999999999877789999997664


Q ss_pred             --eeEeec-------cCCCeEEEEECCCCCEEEEEcC-CCceEeeeEEeCCC-C-eeeEeecCCCceeEEEEecCCCEEE
Q psy11524        115 --ATKWQA-------HDGLILKVAWCSSTDLILSGGE-DCKYKASFVWDTDG-R-QLYSSLTHDHPISSLAWAPGGDMFA  182 (323)
Q Consensus       115 --~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~-d~~i~~i~v~d~~~-~-~~~~~~~~~~~v~~~~~~p~~~~l~  182 (323)
                        +..+..       ...++.++..+|....++..-. .+.|.   +.|... + ................|+|++++++
T Consensus       111 e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~---vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~  187 (369)
T PF02239_consen  111 EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIW---VVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFL  187 (369)
T ss_dssp             -EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEE---EEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEE
T ss_pred             cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEE---EEEeccccccceeeecccccccccccCcccceee
Confidence              444432       2346778888888875555544 47666   778642 2 2223333455678899999999988


Q ss_pred             EEeC--CeEEEEeCCCCeeeec-----CCCCccEEEE-------EEcC--CCCEEEEEecCc-EEEEEcCCCceeeeecC
Q psy11524        183 VGSY--NTLRLCDKVGWSHSLD-----KPDTGSVYDL-------VWSN--DATQIAGACANV-IHIFDISSSSSSNVTAP  245 (323)
Q Consensus       183 ~~~~--~~i~i~d~~~~~~~~~-----~~~~~~v~~~-------~~~~--~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~  245 (323)
                      ++..  +.+-++|.....+...     ..|..+...+       .|..  .+...++.-... +.+||..+.+.++++  
T Consensus       188 va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I--  265 (369)
T PF02239_consen  188 VAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI--  265 (369)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE--
T ss_pred             ecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEE--
Confidence            8766  4999999886644321     2233333332       2221  222332333334 777888888988884  


Q ss_pred             CCCccceEEEEEccCCCCccceEEEE----eCCCCeEEEecccc--cCC---CCccceeEEEEeeCCCeeEeeec--CCe
Q psy11524        246 LSHSHEITQLAVNQTGSLQERHVAFI----DKNRDLYLSMWSHS--LDK---PDTGSVYDLVWSSDATQIAGACA--NGS  314 (323)
Q Consensus       246 ~~~~~~v~~~~~~p~g~~~d~~l~~~----~~~~~~~~~~~~~~--~~~---~~~~~v~~~~~s~~g~~l~s~~~--dg~  314 (323)
                      .....+ .-+.-+|++    ..+.+-    .....+.+++..+.  +..   .....+..+.|++||+.+..+..  ++.
T Consensus       266 ~~~G~g-lFi~thP~s----~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~  340 (369)
T PF02239_consen  266 PTQGGG-LFIKTHPDS----RYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGA  340 (369)
T ss_dssp             E-SSSS---EE--TT-----SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTE
T ss_pred             ECCCCc-ceeecCCCC----ccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCE
Confidence            444444 667789998    566655    23355666666653  111   11234899999999996654433  337


Q ss_pred             EEEEEe
Q psy11524        315 LLLGTI  320 (323)
Q Consensus       315 i~~~~l  320 (323)
                      |.+||-
T Consensus       341 i~v~D~  346 (369)
T PF02239_consen  341 IVVYDA  346 (369)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999874

...

>KOG1517|consensus

Probab=99.54  E-value=2.9e-12  Score=114.13  Aligned_cols=230  Identities=14%  Similarity=0.160  Sum_probs=159.7

Q ss_pred             CEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeec---cCCCeEEEEECC--CCCEEEEEcCCCceEeeeEEeC-
Q psy11524         83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQA---HDGLILKVAWCS--STDLILSGGEDCKYKASFVWDT-  154 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~---~~~~v~~~~~~~--~~~~l~~~~~d~~i~~i~v~d~-  154 (323)
                      +-..+.|+|-...++++.+. -.|.+||-+..  ...+..   ....|+.+.+-.  |..++++++.||.|+   ||+- 
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r-~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIR---Iwk~y 1141 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDR-ERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIR---IWKDY 1141 (1387)
T ss_pred             CCceeeecCCCceeEEcCCc-ceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEE---Eeccc
Confidence            45678889988888877544 47888876554  333332   245788888876  456899999999999   9985 


Q ss_pred             -CC-C---eeeEeec-------CCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCCeee--ecCCCCccEEEEEEcC-CC
Q psy11524        155 -DG-R---QLYSSLT-------HDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGWSHS--LDKPDTGSVYDLVWSN-DA  218 (323)
Q Consensus       155 -~~-~---~~~~~~~-------~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~~--~~~~~~~~v~~~~~~~-~~  218 (323)
                       .. +   .+..+.+       ..+.=.-+.|..+..+|+++++ ..|+|||...+...  ...+....++++.-+- .|
T Consensus      1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred             ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence             21 1   2222211       1111133567765556666665 59999998865433  3333445577766553 57


Q ss_pred             CEEEEEecCc-EEEEEcCCCce---eeeecCCCCccc--eEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCC
Q psy11524        219 TQIAGACANV-IHIFDISSSSS---SNVTAPLSHSHE--ITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDK  288 (323)
Q Consensus       219 ~~l~~~~~d~-i~iwd~~~~~~---~~~~~~~~~~~~--v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~  288 (323)
                      +.+++|..|| |++||.+...+   +..  ...|...  |..+.+.+.|   .+.|..++.+|.+++|+++..    ...
T Consensus      1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~--~R~h~~~~~Iv~~slq~~G---~~elvSgs~~G~I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCV--YREHNDVEPIVHLSLQRQG---LGELVSGSQDGDIQLLDLRMSSKETFLT 1296 (1387)
T ss_pred             ceEEEeecCCceEEeecccCCcccccee--ecccCCcccceeEEeecCC---CcceeeeccCCeEEEEecccCcccccce
Confidence            8999999999 99999886433   333  4556665  9999999987   367889999999999998873    111


Q ss_pred             --CC---ccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        289 --PD---TGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       289 --~~---~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                        .|   ++..+++..+++...+|+|+. +.|+||++..
T Consensus      1297 iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred             eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh
Confidence              11   235899999999999999998 9999999753

>KOG0644|consensus

Probab=99.54  E-value=2.1e-14  Score=124.39  Aligned_cols=231  Identities=16%  Similarity=0.158  Sum_probs=165.8

Q ss_pred             eeeeEeecccceeEeeEeccCCcceeeeeeccccccccceeee---------cCCCCCEEEEEEcCCCCeEEEEeeCCeE
Q psy11524         35 KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRT---------LNVSPPVYSAAWSPDSNKVLLTQAKSLV  105 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~sp~~~~l~~~~~~~~~  105 (323)
                      +.+..+.+|...|+|+.|...|    .++.+|+-|...++|..         -+|.+.|+.++.+.+..++++++.| ..
T Consensus       181 k~ikrLlgH~naVyca~fDrtg----~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D-~v  255 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTG----RYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASND-KV  255 (1113)
T ss_pred             HHHHHHHhhhhheeeeeecccc----ceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccC-ce
Confidence            4456688999999999999999    56667766655555532         2399999999999999999988777 49


Q ss_pred             EEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEe---------------------
Q psy11524        106 IKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSS---------------------  162 (323)
Q Consensus       106 v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~---------------------  162 (323)
                      |++|.+...  +..+.+|.+.|++++|+|-.    +.+.||+++   +||.+-......                     
T Consensus       256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~---~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~  328 (1113)
T KOG0644|consen  256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCR---IWDARLEPRIYVPRPLKFTEKDLVDSILFENNG  328 (1113)
T ss_pred             EEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceE---eccccccccccCCCCCCcccccceeeeeccccc
Confidence            999998776  66789999999999999953    778899999   999751111000                     


Q ss_pred             ----e------cCCCceeEEEEecCCCEEEEEe-----------CC-eEEEEeCC-CCeeeecCCCCccEEEEEEcC-CC
Q psy11524        163 ----L------THDHPISSLAWAPGGDMFAVGS-----------YN-TLRLCDKV-GWSHSLDKPDTGSVYDLVWSN-DA  218 (323)
Q Consensus       163 ----~------~~~~~v~~~~~~p~~~~l~~~~-----------~~-~i~i~d~~-~~~~~~~~~~~~~v~~~~~~~-~~  218 (323)
                          +      ........++|..+.-.+++.+           .+ .+.+|++. +.......+|...+..+.++| +.
T Consensus       329 ~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~  408 (1113)
T KOG0644|consen  329 DRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNP  408 (1113)
T ss_pred             cccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCc
Confidence                0      0001112223332222222222           24 67788865 556667778999999999999 55


Q ss_pred             CEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecc
Q psy11524        219 TQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWS  283 (323)
Q Consensus       219 ~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~  283 (323)
                      ....+++.|| ..|||+-.|.+++.+ ..+ .+.+..-+||++|    ..+++-+.-|.+++....
T Consensus       409 ri~msag~dgst~iwdi~eg~pik~y-~~g-h~kl~d~kFSqdg----ts~~lsd~hgql~i~g~g  468 (1113)
T KOG0644|consen  409 RIAMSAGYDGSTIIWDIWEGIPIKHY-FIG-HGKLVDGKFSQDG----TSIALSDDHGQLYILGTG  468 (1113)
T ss_pred             HhhhhccCCCceEeeecccCCcceee-ecc-cceeeccccCCCC----ceEecCCCCCceEEeccC
Confidence            5666888999 999999999888874 344 4566778999999    677777777777665543

>KOG3881|consensus

Probab=99.54  E-value=2.7e-12  Score=102.29  Aligned_cols=232  Identities=11%  Similarity=0.047  Sum_probs=165.0

Q ss_pred             cCCCCCEEEEEEcCCCCe--EEEEeeCCeEEEEeCCCCc--------eeEeeccCCCeEEEEECCCCCEEEEEcCCCceE
Q psy11524         78 LNVSPPVYSAAWSPDSNK--VLLTQAKSLVIKPLSPNNK--------ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYK  147 (323)
Q Consensus        78 ~~~~~~v~~~~~sp~~~~--l~~~~~~~~~v~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  147 (323)
                      +.....+..++|.-+++.  +.....+. .+........        ........+.|..++.. | ..|++|-.+|.+.
T Consensus        52 ~~~~~ris~l~~~~d~~tevl~~r~~~~-~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-d-g~Litc~~sG~l~  128 (412)
T KOG3881|consen   52 VDELDRISSLLFGVDGETEVLNARSADD-DLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-D-GTLITCVSSGNLQ  128 (412)
T ss_pred             cchhhhhhhheeecCCceeEeeccccCc-ccccccccCCccccccccccccccccccccchhhc-C-CEEEEEecCCcEE
Confidence            345667888888776653  33221222 3444433332        11333445667666654 3 3677888899999


Q ss_pred             eeeEEeCC-----CCeeeEeecCCCceeEEEEecCC-CEEEEEeC-C--eEEEEeCCCCeeeecCC-----------CCc
Q psy11524        148 ASFVWDTD-----GRQLYSSLTHDHPISSLAWAPGG-DMFAVGSY-N--TLRLCDKVGWSHSLDKP-----------DTG  207 (323)
Q Consensus       148 ~i~v~d~~-----~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~-~--~i~i~d~~~~~~~~~~~-----------~~~  207 (323)
                         +|...     ..++..+..+ .++..+.-+|.. .++++|+. +  .+.+||+.+. .+.+.+           -+-
T Consensus       129 ---~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPv  203 (412)
T KOG3881|consen  129 ---VRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPV  203 (412)
T ss_pred             ---EEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCCCccccceeee
Confidence               99986     4455555544 456677777754 45666776 3  7999998754 222211           123


Q ss_pred             cEEEEEEcCC--CCEEEEEecCc-EEEEEcCCC-ceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecc
Q psy11524        208 SVYDLVWSND--ATQIAGACANV-IHIFDISSS-SSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWS  283 (323)
Q Consensus       208 ~v~~~~~~~~--~~~l~~~~~d~-i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~  283 (323)
                      +++++.|-+.  ...+++++.-+ +++||.+.+ +++..  +.-...+++++...|.+    +.|.+++..+.+..++..
T Consensus       204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~--fd~~E~~is~~~l~p~g----n~Iy~gn~~g~l~~FD~r  277 (412)
T KOG3881|consen  204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ--FDFLENPISSTGLTPSG----NFIYTGNTKGQLAKFDLR  277 (412)
T ss_pred             eeccceecCCCCCceEEEEecceeEEEecCcccCcceeE--eccccCcceeeeecCCC----cEEEEecccchhheeccc
Confidence            5778899887  78899999999 999999865 46666  55567799999999999    899999999999999988


Q ss_pred             cc-----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeecC
Q psy11524        284 HS-----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQR  323 (323)
Q Consensus       284 ~~-----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~~  323 (323)
                      ..     .+++-.+.+.++..+|.+++|++++-|..++|+++..|
T Consensus       278 ~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  278 GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence            76     24444789999999999999999999999999998653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.53  E-value=6.2e-11  Score=94.16  Aligned_cols=242  Identities=9%  Similarity=0.097  Sum_probs=155.7

Q ss_pred             ceeeecCCCCCEEEEEEcCCCCeEEEEeeC--CeEEEE--eCCCCceeEeec----cCCCeEEEEECCCCCEEEEEcC-C
Q psy11524         73 SLCRTLNVSPPVYSAAWSPDSNKVLLTQAK--SLVIKP--LSPNNKATKWQA----HDGLILKVAWCSSTDLILSGGE-D  143 (323)
Q Consensus        73 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~--~~~v~~--~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~-d  143 (323)
                      ...+.....+..+-|+|+|++++|.++...  .|.+-.  ||......++..    ...+...++++++|++++++.. .
T Consensus        31 ~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~  110 (346)
T COG2706          31 SLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS  110 (346)
T ss_pred             chhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccC
Confidence            334555678899999999999999988766  455544  444323222221    2233478999999999988875 4


Q ss_pred             CceEeeeEEeCC--CCe--eeEeecCCCc----------eeEEEEecCCCEEEEEeC--CeEEEEeCCCCeee----ecC
Q psy11524        144 CKYKASFVWDTD--GRQ--LYSSLTHDHP----------ISSLAWAPGGDMFAVGSY--NTLRLCDKVGWSHS----LDK  203 (323)
Q Consensus       144 ~~i~~i~v~d~~--~~~--~~~~~~~~~~----------v~~~~~~p~~~~l~~~~~--~~i~i~d~~~~~~~----~~~  203 (323)
                      |.|.   ++-++  +..  ......|.+.          +....+.|+++++++..-  |.|.+|++....+.    ...
T Consensus       111 g~v~---v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v  187 (346)
T COG2706         111 GSVS---VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV  187 (346)
T ss_pred             ceEE---EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc
Confidence            7788   88873  222  2222333333          888999999999999887  59999998743322    112


Q ss_pred             CCCccEEEEEEcCCCCEEEEEec-Cc-EEEEEcCCC--c--eeeeec-CC---CCccceEEEEEccCCCCccceEEEEeC
Q psy11524        204 PDTGSVYDLVWSNDATQIAGACA-NV-IHIFDISSS--S--SSNVTA-PL---SHSHEITQLAVNQTGSLQERHVAFIDK  273 (323)
Q Consensus       204 ~~~~~v~~~~~~~~~~~l~~~~~-d~-i~iwd~~~~--~--~~~~~~-~~---~~~~~v~~~~~~p~g~~~d~~l~~~~~  273 (323)
                      ......+.+.|+|++++....++ ++ |.+|.....  +  .++.+. +.   ........+..+|+|    +.|.+.+.
T Consensus       188 ~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG----rFLYasNR  263 (346)
T COG2706         188 KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDG----RFLYASNR  263 (346)
T ss_pred             CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCC----CEEEEecC
Confidence            34566899999999999887776 66 999987763  2  222210 11   123466788999999    44444432


Q ss_pred             CC-CeEEEecccc--------cCCCCccceeEEEEeeCCCeeEeeecCC-eEEEEEee
Q psy11524        274 NR-DLYLSMWSHS--------LDKPDTGSVYDLVWSSDATQIAGACANG-SLLLGTII  321 (323)
Q Consensus       274 ~~-~~~~~~~~~~--------~~~~~~~~v~~~~~s~~g~~l~s~~~dg-~i~~~~l~  321 (323)
                      .- .+.++.+...        ....++.....+.|+|.|++|+++..++ .|.+|.+-
T Consensus       264 g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         264 GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence            21 1222222211        1112244468899999999999888764 47887763

>KOG2394|consensus

Probab=99.53  E-value=5.2e-13  Score=110.51  Aligned_cols=205  Identities=15%  Similarity=0.157  Sum_probs=141.3

Q ss_pred             CEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc------e--eEeeccCCCeEEEEE-----CCCCCEEEEEcCCCceEee
Q psy11524         83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK------A--TKWQAHDGLILKVAW-----CSSTDLILSGGEDCKYKAS  149 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~------~--~~~~~~~~~v~~~~~-----~~~~~~l~~~~~d~~i~~i  149 (323)
                      .+....++-.|++|++.-.+  .+++|+..+.      +  ..+..  ....+=+|     .|.+--++.+-.-|.+.  
T Consensus       125 ~~~~~~~~~~gd~lcFnvg~--~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~a~~~g~dllIGf~tGqvq--  198 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNVGR--ELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFTATPKGLDLLIGFTTGQVQ--  198 (636)
T ss_pred             ceeeccccCCCCEEEEecCC--eEEEEEccCcchhccchhhhcccC--CCCceecccccccCCCCcceEEeeccCceE--
Confidence            45566677788888886555  4555554422      1  11111  11223333     34566677788888888  


Q ss_pred             eEEeCCCCeeeEe-----ecCCCceeEEEEecCCC-EEEEEeC-CeEEEEeCCC---C---e---------ee--e----
Q psy11524        150 FVWDTDGRQLYSS-----LTHDHPISSLAWAPGGD-MFAVGSY-NTLRLCDKVG---W---S---------HS--L----  201 (323)
Q Consensus       150 ~v~d~~~~~~~~~-----~~~~~~v~~~~~~p~~~-~l~~~~~-~~i~i~d~~~---~---~---------~~--~----  201 (323)
                       +.|...+.+..+     ...+..++++.|-|.+. .|+++-. +.+++||..-   .   .         ..  .    
T Consensus       199 -~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk  277 (636)
T KOG2394|consen  199 -LIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSK  277 (636)
T ss_pred             -EecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeecc
Confidence             888743333221     12347899999999543 4444444 5899987421   0   0         00  0    


Q ss_pred             --------cCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEe
Q psy11524        202 --------DKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFID  272 (323)
Q Consensus       202 --------~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~  272 (323)
                              ..-..+.|...+|+|||++||+.+.|| ++|||..+.+.+..  +...-+...+++|||||    ++|+++.
T Consensus       278 ~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~--mkSYFGGLLCvcWSPDG----KyIvtGG  351 (636)
T KOG2394|consen  278 KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV--MKSYFGGLLCVCWSPDG----KYIVTGG  351 (636)
T ss_pred             ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH--HHhhccceEEEEEcCCc----cEEEecC
Confidence                    001234678899999999999999999 99999999888776  56677889999999999    8999999


Q ss_pred             CCCCeEEEecccc----cCCCCccceeEEEEe
Q psy11524        273 KNRDLYLSMWSHS----LDKPDTGSVYDLVWS  300 (323)
Q Consensus       273 ~~~~~~~~~~~~~----~~~~~~~~v~~~~~s  300 (323)
                      .|.-+.+|.+...    --++|.++|..++|.
T Consensus       352 EDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  352 EDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             CcceEEEEEeccceEEEeccccccceeeEeec
Confidence            9999999998776    345688999999998

>KOG3881|consensus

Probab=99.49  E-value=3.1e-12  Score=102.02  Aligned_cols=175  Identities=17%  Similarity=0.186  Sum_probs=139.7

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCC--eEEEEeCCCCceeEeeccC-----------CCeEEEEECCC--CCEEEEEcCCC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKS--LVIKPLSPNNKATKWQAHD-----------GLILKVAWCSS--TDLILSGGEDC  144 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~--~~v~~~~~~~~~~~~~~~~-----------~~v~~~~~~~~--~~~l~~~~~d~  144 (323)
                      ...++..|.-+|...++++.|...  ..+.+||+.+..+.+.+-.           -.++++.|.+.  ...||++..-+
T Consensus       147 ~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~h  226 (412)
T KOG3881|consen  147 TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYH  226 (412)
T ss_pred             cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecce
Confidence            456777777788777777755554  5799999988755554321           24578899887  78999999999


Q ss_pred             ceEeeeEEeCC--CCeeeEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCCeee--ecCCCCccEEEEEEcCCCC
Q psy11524        145 KYKASFVWDTD--GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGWSHS--LDKPDTGSVYDLVWSNDAT  219 (323)
Q Consensus       145 ~i~~i~v~d~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~~--~~~~~~~~v~~~~~~~~~~  219 (323)
                      .++   +||..  .+++..+.-...+++++...|+++.+++|.. +.+..||+++..+.  .+.+..+.++++..+|.++
T Consensus       227 qvR---~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~  303 (412)
T KOG3881|consen  227 QVR---LYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP  303 (412)
T ss_pred             eEE---EecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCc
Confidence            999   99995  6778888888899999999999999999988 69999999976543  3677889999999999999


Q ss_pred             EEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccC
Q psy11524        220 QIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQT  260 (323)
Q Consensus       220 ~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~  260 (323)
                      +|++++-|. ++|+|+.+.+++...   --....+.+.+.++
T Consensus       304 ~las~GLDRyvRIhD~ktrkll~kv---YvKs~lt~il~~~~  342 (412)
T KOG3881|consen  304 VLASCGLDRYVRIHDIKTRKLLHKV---YVKSRLTFILLRDD  342 (412)
T ss_pred             eEEeeccceeEEEeecccchhhhhh---hhhccccEEEecCC
Confidence            999999999 999999997776652   23345666766554

>KOG0974|consensus

Probab=99.46  E-value=6.3e-12  Score=111.70  Aligned_cols=190  Identities=13%  Similarity=0.095  Sum_probs=143.6

Q ss_pred             CCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCc-----eeEEEEecCCCEEEEEeC-CeEEEEeCCC
Q psy11524        123 GLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHP-----ISSLAWAPGGDMFAVGSY-NTLRLCDKVG  196 (323)
Q Consensus       123 ~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~-----v~~~~~~p~~~~l~~~~~-~~i~i~d~~~  196 (323)
                      ..+....+..+.+.++.+..+..+.   +||.....+..-..+...     ..-+-++++.-++++|+- +.|.+|+...
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~---i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~  164 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLL---IRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE  164 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEE---EEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc
Confidence            3344455555677888888899999   999864443332222222     122335666667888887 7999999764


Q ss_pred             Ceee-ecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceee-eecCCCCccceEEEEEccCCCCccceEEEEeC
Q psy11524        197 WSHS-LDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSN-VTAPLSHSHEITQLAVNQTGSLQERHVAFIDK  273 (323)
Q Consensus       197 ~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~  273 (323)
                      .... .+.+|.+.+.++.|+.||.++++.++|. +++|++++.+... +  ..+|...++.+.|.|+      .++++..
T Consensus       165 dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~--~fgHsaRvw~~~~~~n------~i~t~ge  236 (967)
T KOG0974|consen  165 DNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCT--GFGHSARVWACCFLPN------RIITVGE  236 (967)
T ss_pred             cCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcc--cccccceeEEEEeccc------eeEEecc
Confidence            3333 5788999999999999999999999999 9999999988776 4  6789999999999985      5777777


Q ss_pred             CCCeEEEecccc---cCCCC-ccceeEEEEeeCCCeeEeeecCCeEEEEEeecC
Q psy11524        274 NRDLYLSMWSHS---LDKPD-TGSVYDLVWSSDATQIAGACANGSLLLGTIIQR  323 (323)
Q Consensus       274 ~~~~~~~~~~~~---~~~~~-~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~~  323 (323)
                      |-...+|.....   ....| ...++.++..++...+++++.||.+++|++..|
T Consensus       237 dctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  237 DCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             ceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            777777744332   33334 467999999999999999999999999988654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.45  E-value=3.7e-10  Score=94.93  Aligned_cols=205  Identities=13%  Similarity=0.108  Sum_probs=133.9

Q ss_pred             ceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeE---ee-----------ccCCCeEEEEECCCCC
Q psy11524         73 SLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATK---WQ-----------AHDGLILKVAWCSSTD  135 (323)
Q Consensus        73 ~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~---~~-----------~~~~~v~~~~~~~~~~  135 (323)
                      ....... .......++++|++++|+++....+.+.++++...  +..   ..           .......++.|+|||+
T Consensus        77 ~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~  156 (345)
T PF10282_consen   77 TLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR  156 (345)
T ss_dssp             EEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred             EEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence            3333343 56677789999999999999877789988877652  111   11           1234577899999999


Q ss_pred             EEEEEcC-CCceEeeeEEeCCCCe--eeE---e-ecCCCceeEEEEecCCCEEEEEeC-C-eEEEEeCC--CCeee----
Q psy11524        136 LILSGGE-DCKYKASFVWDTDGRQ--LYS---S-LTHDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKV--GWSHS----  200 (323)
Q Consensus       136 ~l~~~~~-d~~i~~i~v~d~~~~~--~~~---~-~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~--~~~~~----  200 (323)
                      ++++... ...|.   +|+++...  +..   + .........++|+|+++++++..+ + .|.++++.  .....    
T Consensus       157 ~v~v~dlG~D~v~---~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~  233 (345)
T PF10282_consen  157 FVYVPDLGADRVY---VYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT  233 (345)
T ss_dssp             EEEEEETTTTEEE---EEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEEecCCCEEE---EEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE
Confidence            8887653 34677   88885322  322   2 234456889999999999988888 4 89999866  32221    


Q ss_pred             --ec-CC--CCccEEEEEEcCCCCEEEEEecCc--EEEEEcC--CCceeeeecCCCCccceEEEEEccCCCCccceEEEE
Q psy11524        201 --LD-KP--DTGSVYDLVWSNDATQIAGACANV--IHIFDIS--SSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFI  271 (323)
Q Consensus       201 --~~-~~--~~~~v~~~~~~~~~~~l~~~~~d~--i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~  271 (323)
                        .. ..  .......++++|||++|+++....  |.+|++.  +++....-.........+.++++|+|    ++|.+.
T Consensus       234 ~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g----~~l~Va  309 (345)
T PF10282_consen  234 ISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG----RYLYVA  309 (345)
T ss_dssp             EESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS----SEEEEE
T ss_pred             eeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCC----CEEEEE
Confidence              11 01  122588999999999998887655  9999983  34433221122234457899999999    788887


Q ss_pred             eCC-CCeEEEeccc
Q psy11524        272 DKN-RDLYLSMWSH  284 (323)
Q Consensus       272 ~~~-~~~~~~~~~~  284 (323)
                      +.+ +.+.++++..
T Consensus       310 ~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  310 NQDSNTVSVFDIDP  323 (345)
T ss_dssp             ETTTTEEEEEEEET
T ss_pred             ecCCCeEEEEEEeC
Confidence            754 4566776643

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2315|consensus

Probab=99.44  E-value=9.1e-11  Score=97.97  Aligned_cols=126  Identities=17%  Similarity=0.188  Sum_probs=92.9

Q ss_pred             eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEec--Cc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCc
Q psy11524        188 TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACA--NV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQ  264 (323)
Q Consensus       188 ~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~  264 (323)
                      ++++.++.+....+.....++|.++.|+|+|+-++++..  -. +.|||++ +.++..    -..++-+++-|+|.|   
T Consensus       252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~d----f~egpRN~~~fnp~g---  323 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFD----FPEGPRNTAFFNPHG---  323 (566)
T ss_pred             eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEe----CCCCCccceEECCCC---
Confidence            467777766555555556889999999999987776554  33 9999966 556554    244677889999999   


Q ss_pred             cceEEEE---eCCCCeEEEecccc--cCCCCccceeEEEEeeCCCeeEeeec------CCeEEEEEeec
Q psy11524        265 ERHVAFI---DKNRDLYLSMWSHS--LDKPDTGSVYDLVWSSDATQIAGACA------NGSLLLGTIIQ  322 (323)
Q Consensus       265 d~~l~~~---~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~s~~~------dg~i~~~~l~~  322 (323)
                       +.|.+.   +..|.+.+|++...  +.+.....-+-+.|+|||+++++++.      |+.++||+...
T Consensus       324 -~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  324 -NIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             -CEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence             777764   67789999999874  33333345567899999999998875      67788898643

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.44  E-value=1.7e-10  Score=96.95  Aligned_cols=182  Identities=14%  Similarity=0.135  Sum_probs=115.4

Q ss_pred             CCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCce
Q psy11524         93 SNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPI  169 (323)
Q Consensus        93 ~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v  169 (323)
                      ++.++++..+.+.|.+.|....  +..+.........+.|+|||+++++++.||.|.   ++|+. .+.+.++.. ....
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vs---viD~~~~~~v~~i~~-G~~~   80 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVS---VIDLATGKVVATIKV-GGNP   80 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEE---EEETTSSSEEEEEE--SSEE
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEE---EEECCcccEEEEEec-CCCc
Confidence            3455566666679999998765  556655444445678999999999999999999   99996 555666654 4457


Q ss_pred             eEEEEecCCCEEEEEeC--CeEEEEeCCCCe-eeecCC-------CCccEEEEEEcCCCCEEEEEecC-c-EEEEEcCCC
Q psy11524        170 SSLAWAPGGDMFAVGSY--NTLRLCDKVGWS-HSLDKP-------DTGSVYDLVWSNDATQIAGACAN-V-IHIFDISSS  237 (323)
Q Consensus       170 ~~~~~~p~~~~l~~~~~--~~i~i~d~~~~~-~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d-~-i~iwd~~~~  237 (323)
                      .++++++||++++++..  +.+.++|.++.+ +.....       ...++..+..+|....++..-.+ + |.+.|....
T Consensus        81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~  160 (369)
T PF02239_consen   81 RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP  160 (369)
T ss_dssp             EEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred             ceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence            88999999999998887  499999987643 332211       23467788888988866666555 5 989898776


Q ss_pred             ceeeeecCCCCccceEEEEEccCCC------CccceEEEEeCCCCeEE
Q psy11524        238 SSSNVTAPLSHSHEITQLAVNQTGS------LQERHVAFIDKNRDLYL  279 (323)
Q Consensus       238 ~~~~~~~~~~~~~~v~~~~~~p~g~------~~d~~l~~~~~~~~~~~  279 (323)
                      +.+... ............|+|+++      ...+.+.+++......+
T Consensus       161 ~~~~~~-~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v  207 (369)
T PF02239_consen  161 KNLKVT-TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV  207 (369)
T ss_dssp             SCEEEE-EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             ccccee-eecccccccccccCcccceeeecccccceeEEEeeccceEE
Confidence            544321 233445677889999985      22334445565554433

...

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.43  E-value=1.6e-09  Score=86.35  Aligned_cols=234  Identities=11%  Similarity=0.104  Sum_probs=152.1

Q ss_pred             cceeEeeEeccCCcceeeeeecc--------cccc---ccceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCC
Q psy11524         44 DGTVINYPISPYISVLHSYAASH--------SWPQ---ALSLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSP  111 (323)
Q Consensus        44 ~~~v~~~~~~~~~~~~~~~~~~~--------~~~~---~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~  111 (323)
                      .+...=+.++|+++.|+.....+        .||.   .+.+..... ...+-+.++++++|++++++....+.|.++.+
T Consensus        39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~  118 (346)
T COG2706          39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPL  118 (346)
T ss_pred             cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEc
Confidence            33444456666666555444432        1332   222222222 34445899999999999999988889999877


Q ss_pred             CCc-----eeEeeccCCC----------eEEEEECCCCCEEEEEcC-CCceEeeeEEeCCCCeeeEe----ecCCCceeE
Q psy11524        112 NNK-----ATKWQAHDGL----------ILKVAWCSSTDLILSGGE-DCKYKASFVWDTDGRQLYSS----LTHDHPISS  171 (323)
Q Consensus       112 ~~~-----~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~-d~~i~~i~v~d~~~~~~~~~----~~~~~~v~~  171 (323)
                      ...     ......|.+.          +....+.|++++|++.+- -.+|.   +|+++...+...    .........
T Consensus       119 ~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~---~y~~~dg~L~~~~~~~v~~G~GPRH  195 (346)
T COG2706         119 QADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF---LYDLDDGKLTPADPAEVKPGAGPRH  195 (346)
T ss_pred             ccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE---EEEcccCccccccccccCCCCCcce
Confidence            542     2233445554          788999999999988753 23566   999863333221    134556789


Q ss_pred             EEEecCCCEEEEEeC-C-eEEEEeCCC--CeeeecC---------CCCccEEEEEEcCCCCEEEEEecCc--EEEEEcCC
Q psy11524        172 LAWAPGGDMFAVGSY-N-TLRLCDKVG--WSHSLDK---------PDTGSVYDLVWSNDATQIAGACANV--IHIFDISS  236 (323)
Q Consensus       172 ~~~~p~~~~l~~~~~-~-~i~i~d~~~--~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~d~--i~iwd~~~  236 (323)
                      |.|+|++++....++ + +|-+|....  .....++         ....+...+..+|||++|.++....  |.+|.+..
T Consensus       196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~  275 (346)
T COG2706         196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP  275 (346)
T ss_pred             EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence            999999999999888 6 999998664  2222111         1344678899999999998887654  88887653


Q ss_pred             --CceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCC-CeEEEeccc
Q psy11524        237 --SSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNR-DLYLSMWSH  284 (323)
Q Consensus       237 --~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~-~~~~~~~~~  284 (323)
                        ++....-....+....+.+.|+|.+    +.|...+.++ .+.++....
T Consensus       276 ~~g~L~~~~~~~teg~~PR~F~i~~~g----~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         276 DGGKLELVGITPTEGQFPRDFNINPSG----RFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             CCCEEEEEEEeccCCcCCccceeCCCC----CEEEEEccCCCcEEEEEEcC
Confidence              4322221123455567899999998    6776666554 466665554

>KOG1334|consensus

Probab=99.43  E-value=5.8e-12  Score=103.21  Aligned_cols=238  Identities=14%  Similarity=0.140  Sum_probs=163.9

Q ss_pred             eeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc---eeEeeccCCCeEEEEECCC--CCEEEEEcCCCceEe
Q psy11524         75 CRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK---ATKWQAHDGLILKVAWCSS--TDLILSGGEDCKYKA  148 (323)
Q Consensus        75 ~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~---~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~  148 (323)
                      ...|. |.+-|..+.|+..|..|++++.+ ..+.+||-...   +.-..+|...|....|-|.  ...+++++.||.++ 
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD-~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr-  212 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDD-LQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR-  212 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCcc-ceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee-
Confidence            33443 89999999999999999998777 48888875443   2334678888988889884  46799999999999 


Q ss_pred             eeEEeCC--CC--eeeEeecCCCceeEEEEecCCCE-EEEEeCC-eEEEEeCCCC----eeeecCCCCc---cEEEEEEc
Q psy11524        149 SFVWDTD--GR--QLYSSLTHDHPISSLAWAPGGDM-FAVGSYN-TLRLCDKVGW----SHSLDKPDTG---SVYDLVWS  215 (323)
Q Consensus       149 i~v~d~~--~~--~~~~~~~~~~~v~~~~~~p~~~~-l~~~~~~-~i~i~d~~~~----~~~~~~~~~~---~v~~~~~~  215 (323)
                        +=.+.  +.  ....+..|.++|.-++.-|+..+ |.+++.| .+.-+|++..    .......+..   ....++.+
T Consensus       213 --~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~  290 (559)
T KOG1334|consen  213 --VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD  290 (559)
T ss_pred             --eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence              76652  22  23456678999999999997544 8888886 8888898743    1222222333   46789999


Q ss_pred             CCC-CEEEEEecCc-EEEEEcCCCce------eeeec----CCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecc
Q psy11524        216 NDA-TQIAGACANV-IHIFDISSSSS------SNVTA----PLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWS  283 (323)
Q Consensus       216 ~~~-~~l~~~~~d~-i~iwd~~~~~~------~~~~~----~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~  283 (323)
                      |-. ..+++++.|. +++||.+.-..      +..+.    .......|++++++.++.   ..++.++ +-.++++.-.
T Consensus       291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s---ElLaSYn-De~IYLF~~~  366 (559)
T KOG1334|consen  291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS---ELLASYN-DEDIYLFNKS  366 (559)
T ss_pred             CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc---ceeeeec-ccceEEeccc
Confidence            954 4789999999 99999764321      12110    112345789999998772   3444333 3344544321


Q ss_pred             cc-----------------cCCCCc--cceeEEE-EeeCCCeeEeeecCCeEEEEEe
Q psy11524        284 HS-----------------LDKPDT--GSVYDLV-WSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       284 ~~-----------------~~~~~~--~~v~~~~-~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      ..                 ++++|.  ..|..+- |-|...++++|++=|.|.||+-
T Consensus       367 ~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K  423 (559)
T KOG1334|consen  367 MGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK  423 (559)
T ss_pred             cccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEec
Confidence            11                 456664  3466665 4577889999999999999973

>KOG1409|consensus

Probab=99.43  E-value=6.2e-11  Score=93.30  Aligned_cols=225  Identities=15%  Similarity=0.215  Sum_probs=143.6

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeeccccccccceeeecC-----------CCCCEEEEEEcCCCCeEEEEeeCCeEE
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLN-----------VSPPVYSAAWSPDSNKVLLTQAKSLVI  106 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~sp~~~~l~~~~~~~~~v  106 (323)
                      ..++||.+.|+....-|-.    ..+.+.+.|.+.++|....           -..+++++.+.++...|+++-.. |.+
T Consensus        18 ~~~eG~~d~vn~~~l~~~e----~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~n-gtv   92 (404)
T KOG1409|consen   18 SKIEGSQDDVNAAILIPKE----EGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDN-GTV   92 (404)
T ss_pred             hhhcCchhhhhhheeccCC----CCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEec-ceE
Confidence            3467888888877666644    2344555566666654432           36789999999998888876544 688


Q ss_pred             EEeCCCCc------eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC--CCeeeEeecCCCceeEEEEecCC
Q psy11524        107 KPLSPNNK------ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD--GRQLYSSLTHDHPISSLAWAPGG  178 (323)
Q Consensus       107 ~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~--~~~~~~~~~~~~~v~~~~~~p~~  178 (323)
                      .-+.....      .+....|..++..+.|+-..+++++.+.|..+.    |...  +..+-.+.- ....+++.+.-. 
T Consensus        93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~----~hc~e~~~~lg~Y~~-~~~~t~~~~d~~-  166 (404)
T KOG1409|consen   93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA----WHCTESGNRLGGYNF-ETPASALQFDAL-  166 (404)
T ss_pred             EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE----EEeeccCCcccceEe-eccCCCCceeeE-
Confidence            77655432      566788999999999998889999999998874    6542  222221110 011111222111 


Q ss_pred             CEEEEEeC-CeEEEEe---CCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceE
Q psy11524        179 DMFAVGSY-NTLRLCD---KVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEIT  253 (323)
Q Consensus       179 ~~l~~~~~-~~i~i~d---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~  253 (323)
                       +...|.. +.+..-.   -.-..+..+.+|.+.+.+++|.|....|.++..|. +.+||+..++-..- .+.+|...|.
T Consensus       167 -~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~-el~gh~~kV~  244 (404)
T KOG1409|consen  167 -YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAY-ELQGHNDKVQ  244 (404)
T ss_pred             -EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceee-eeccchhhhh
Confidence             3333333 3433333   33346667889999999999999999999999999 99999875543331 1567776666


Q ss_pred             EEEEccCCC-----CccceEEEEeCCC
Q psy11524        254 QLAVNQTGS-----LQERHVAFIDKNR  275 (323)
Q Consensus       254 ~~~~~p~g~-----~~d~~l~~~~~~~  275 (323)
                      .+...+..+     ..|+.|.+|+.+.
T Consensus       245 ~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  245 ALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             hhhhhhhheeeeeccCCCeEEEEeccc
Confidence            554433321     2245666666544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.42  E-value=1.1e-09  Score=101.89  Aligned_cols=231  Identities=18%  Similarity=0.228  Sum_probs=158.5

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEe----CCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPL----SPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT  154 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~----~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~  154 (323)
                      ....|.++.+-++...++.+..+ |.|.+.    +.... ......-...|.+++||||+..|+....++++.   +.+.
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~-Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~---~mt~  149 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALAS-GDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLL---LMTR  149 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECC-ceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEE---EEec
Confidence            45789999999999888877666 577776    54444 333445678999999999999999999888886   5332


Q ss_pred             CC------------------------CeeeEeec------------------------CCCceeEEEEecCCCEEEEEeC
Q psy11524        155 DG------------------------RQLYSSLT------------------------HDHPISSLAWAPGGDMFAVGSY  186 (323)
Q Consensus       155 ~~------------------------~~~~~~~~------------------------~~~~v~~~~~~p~~~~l~~~~~  186 (323)
                      +-                        ++-.++.+                        ....-..++|-.||.+||+.+-
T Consensus       150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~  229 (928)
T PF04762_consen  150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSV  229 (928)
T ss_pred             cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEE
Confidence            10                        01011100                        1223457889999999998763


Q ss_pred             ------C-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEec--C-c-EEEEEcCCCceeeeecCC--CCccceE
Q psy11524        187 ------N-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACA--N-V-IHIFDISSSSSSNVTAPL--SHSHEIT  253 (323)
Q Consensus       187 ------~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d-~-i~iwd~~~~~~~~~~~~~--~~~~~v~  253 (323)
                            . .+++|+-.+........-.+--.+++|.|.|++||+...  + . |.+|. ++|-....+.+.  .....|.
T Consensus       230 ~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~  308 (928)
T PF04762_consen  230 EPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVI  308 (928)
T ss_pred             EcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceee
Confidence                  2 699999887655555544555668999999999988765  2 3 88888 555444333232  4567899


Q ss_pred             EEEEccCCCCccceEEEEeCCCCeEEEecccc-------cCCCCccceeEEEEeeCCC-eeEeeecCCeEEEEEe
Q psy11524        254 QLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-------LDKPDTGSVYDLVWSSDAT-QIAGACANGSLLLGTI  320 (323)
Q Consensus       254 ~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~~g~-~l~s~~~dg~i~~~~l  320 (323)
                      .++|++++    ..++++-.+. +.+|.....       +.-.....+..+.|+|... .|...+.+|.+..+++
T Consensus       309 ~l~Wn~ds----~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  309 ELAWNSDS----EILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             EEEECCCC----CEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            99999999    8888877544 888876553       1111134455699999754 5777777788777665

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.41  E-value=1e-09  Score=104.00  Aligned_cols=230  Identities=9%  Similarity=0.007  Sum_probs=142.8

Q ss_pred             EEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeE-eec--------------cCCCeEEEEECCCCCEEEEEcC-CCceEe
Q psy11524         85 YSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATK-WQA--------------HDGLILKVAWCSSTDLILSGGE-DCKYKA  148 (323)
Q Consensus        85 ~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~-~~~--------------~~~~v~~~~~~~~~~~l~~~~~-d~~i~~  148 (323)
                      ..+++++++..++++...++.|++++..+.... +..              .-.....+++.++++.|+++.. .+.|+ 
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir-  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR-  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE-
Confidence            468898876666666666678999998776332 211              0123578999998887666554 56788 


Q ss_pred             eeEEeCCCCeeeEeecC-----------------CCceeEEEEecC-CCEEEEEeCC-eEEEEeCCCCeeeecCC-----
Q psy11524        149 SFVWDTDGRQLYSSLTH-----------------DHPISSLAWAPG-GDMFAVGSYN-TLRLCDKVGWSHSLDKP-----  204 (323)
Q Consensus       149 i~v~d~~~~~~~~~~~~-----------------~~~v~~~~~~p~-~~~l~~~~~~-~i~i~d~~~~~~~~~~~-----  204 (323)
                        ++|+.+..+.++.+.                 -.....++++|+ +..+++...+ .|++||..+.....+.+     
T Consensus       650 --~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        650 --EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             --EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence              999876666655321                 113467999995 4444444444 99999986543332211     


Q ss_pred             ----------CCccEEEEEEcCCCCEEEEEec-Cc-EEEEEcCCCceeeee-----------cCCCC--------ccceE
Q psy11524        205 ----------DTGSVYDLVWSNDATQIAGACA-NV-IHIFDISSSSSSNVT-----------APLSH--------SHEIT  253 (323)
Q Consensus       205 ----------~~~~v~~~~~~~~~~~l~~~~~-d~-i~iwd~~~~~~~~~~-----------~~~~~--------~~~v~  253 (323)
                                .-.....++++|+|++|+++.. ++ |++||+.++......           .+...        .....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence                      1124567999999986665554 55 999998876532110           00000        11245


Q ss_pred             EEEEccCCCCccceEEEEe-CCCCeEEEecccc---------c--------CCCCccceeEEEEeeCCCeeEeeecCCeE
Q psy11524        254 QLAVNQTGSLQERHVAFID-KNRDLYLSMWSHS---------L--------DKPDTGSVYDLVWSSDATQIAGACANGSL  315 (323)
Q Consensus       254 ~~~~~p~g~~~d~~l~~~~-~~~~~~~~~~~~~---------~--------~~~~~~~v~~~~~s~~g~~l~s~~~dg~i  315 (323)
                      .++++++|.     +.+.+ .++.+.+|+..+.         .        ....-.....++++++|+.+++-+.+++|
T Consensus       808 Gvavd~dG~-----LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I  882 (1057)
T PLN02919        808 GVLCAKDGQ-----IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI  882 (1057)
T ss_pred             eeeEeCCCc-----EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence            788888873     33333 2334445544322         0        00111356789999999999999999999


Q ss_pred             EEEEeec
Q psy11524        316 LLGTIIQ  322 (323)
Q Consensus       316 ~~~~l~~  322 (323)
                      ++|++.+
T Consensus       883 rvid~~~  889 (1057)
T PLN02919        883 RYLDLNK  889 (1057)
T ss_pred             EEEECCC
Confidence            9999753

>KOG1354|consensus

Probab=99.39  E-value=4.3e-11  Score=94.22  Aligned_cols=233  Identities=12%  Similarity=0.146  Sum_probs=154.2

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-------eeEeeccC------------CCeEEEEECCCCC--EE
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-------ATKWQAHD------------GLILKVAWCSSTD--LI  137 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-------~~~~~~~~------------~~v~~~~~~~~~~--~l  137 (323)
                      ....-+.++.|..+|.+||+|..+ |.|.++.....       ...++.|.            ..|..+.|.++++  .+
T Consensus        23 teadiis~vef~~~Ge~LatGdkg-GRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F  101 (433)
T KOG1354|consen   23 TEADIISAVEFDHYGERLATGDKG-GRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF  101 (433)
T ss_pred             chhcceeeEEeecccceEeecCCC-CeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence            356778999999999999988555 78888865432       12233443            3688999998764  67


Q ss_pred             EEEcCCCceEeeeEEeCCCCeeeE---------------------e----------------ecCCCceeEEEEecCCCE
Q psy11524        138 LSGGEDCKYKASFVWDTDGRQLYS---------------------S----------------LTHDHPISSLAWAPGGDM  180 (323)
Q Consensus       138 ~~~~~d~~i~~i~v~d~~~~~~~~---------------------~----------------~~~~~~v~~~~~~p~~~~  180 (323)
                      +....|.+|+   +|-+..+....                     +                ..|+..|+++.++.|+..
T Consensus       102 LlstNdktiK---lWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et  178 (433)
T KOG1354|consen  102 LLSTNDKTIK---LWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET  178 (433)
T ss_pred             EEecCCccee---eeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence            7778899999   99873111000                     0                246777999999999998


Q ss_pred             EEEEeCCeEEEEeCC--CC--eeeecCCCC-----ccEEEEEEcCC-CCEEEEEecCc-EEEEEcCCCceee------ee
Q psy11524        181 FAVGSYNTLRLCDKV--GW--SHSLDKPDT-----GSVYDLVWSND-ATQIAGACANV-IHIFDISSSSSSN------VT  243 (323)
Q Consensus       181 l~~~~~~~i~i~d~~--~~--~~~~~~~~~-----~~v~~~~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~------~~  243 (323)
                      ++++.+=.|.+|++.  .+  .+.-.+++.     .-|++..|+|. .+.++..+..| |++-|++......      ..
T Consensus       179 ~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe  258 (433)
T KOG1354|consen  179 FLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE  258 (433)
T ss_pred             EeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence            887654499999975  22  333334332     34889999994 55777778888 9999998432111      00


Q ss_pred             c--------CCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----cCCCC------------ccc---ee
Q psy11524        244 A--------PLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----LDKPD------------TGS---VY  295 (323)
Q Consensus       244 ~--------~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----~~~~~------------~~~---v~  295 (323)
                      .        +.+.-..|..+.|+++|    +++..-+. -.+.+|++.-.     +.+.|            ...   -.
T Consensus       259 pedp~~rsffseiIsSISDvKFs~sG----ryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKF  333 (433)
T KOG1354|consen  259 PEDPSSRSFFSEIISSISDVKFSHSG----RYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKF  333 (433)
T ss_pred             ccCCcchhhHHHHhhhhhceEEccCC----cEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhee
Confidence            0        11122468899999998    45444332 23555555221     11111            111   24


Q ss_pred             EEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        296 DLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       296 ~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      .++|+.++.++++|+.....+++++
T Consensus       334 ec~~sg~~~~v~TGsy~n~frvf~~  358 (433)
T KOG1354|consen  334 ECSWSGNDSYVMTGSYNNVFRVFNL  358 (433)
T ss_pred             EEEEcCCcceEecccccceEEEecC
Confidence            6889999999999999999999874

>KOG1240|consensus

Probab=99.37  E-value=1.4e-10  Score=105.11  Aligned_cols=207  Identities=14%  Similarity=0.184  Sum_probs=147.5

Q ss_pred             eCCCCc-eeEeeccCCCeEEEEECCCC-CEEEEEcCCCceEeeeEEeCC---CC-----eeeEeecCCCceeEEEEecCC
Q psy11524        109 LSPNNK-ATKWQAHDGLILKVAWCSST-DLILSGGEDCKYKASFVWDTD---GR-----QLYSSLTHDHPISSLAWAPGG  178 (323)
Q Consensus       109 ~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~i~v~d~~---~~-----~~~~~~~~~~~v~~~~~~p~~  178 (323)
                      |...+. +..+..|...+..++.++.. .++++|+.||+|+   +|+..   ++     ...++......+..+.+.+.+
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVK---vW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVK---VWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG 1110 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEE---EeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC
Confidence            666555 56678899988888888754 8999999999999   99983   21     223334456789999999999


Q ss_pred             CEEEEEeCC-eEEEEeCCCCee--------eecCCC-Ccc-EEEEEEcC-CCC-EEEEEecCc-EEEEEcCCCceeeeec
Q psy11524        179 DMFAVGSYN-TLRLCDKVGWSH--------SLDKPD-TGS-VYDLVWSN-DAT-QIAGACANV-IHIFDISSSSSSNVTA  244 (323)
Q Consensus       179 ~~l~~~~~~-~i~i~d~~~~~~--------~~~~~~-~~~-v~~~~~~~-~~~-~l~~~~~d~-i~iwd~~~~~~~~~~~  244 (323)
                      +.+|+++.| .|++.++.....        .....+ .+. +..-++.. .+. .|+.+...+ |..||+++.....+.+
T Consensus      1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred             CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh
Confidence            999999886 999988763111        111111 222 33334433 333 677777777 9999999887776654


Q ss_pred             CCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccccc-----CCCCccceeEEEEeeCCC---eeEeee--cCCe
Q psy11524        245 PLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSL-----DKPDTGSVYDLVWSSDAT---QIAGAC--ANGS  314 (323)
Q Consensus       245 ~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~~g~---~l~s~~--~dg~  314 (323)
                      .....+.|++++.+|.+    +.+.++...|...+|+++-.+     ...+..++..+..+|-.+   ..++++  ..+.
T Consensus      1191 ~~~~hG~vTSi~idp~~----~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne 1266 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWC----NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE 1266 (1431)
T ss_pred             cCccccceeEEEecCCc----eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc
Confidence            55666899999999999    899999999999999987751     112246778887777543   444444  5778


Q ss_pred             EEEEEeec
Q psy11524        315 LLLGTIIQ  322 (323)
Q Consensus       315 i~~~~l~~  322 (323)
                      |.+|++..
T Consensus      1267 vs~wn~~~ 1274 (1431)
T KOG1240|consen 1267 VSTWNMET 1274 (1431)
T ss_pred             eeeeeccc
Confidence            99998754

>KOG0280|consensus

Probab=99.35  E-value=1.8e-10  Score=88.88  Aligned_cols=233  Identities=12%  Similarity=0.067  Sum_probs=150.6

Q ss_pred             CCCEEEEEEcC---CCCeEEEEeeCCeEEEEeCCCCc--eeEeeccC------CCeEEEEECCCCCEEEEEcCCCceEee
Q psy11524         81 SPPVYSAAWSP---DSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHD------GLILKVAWCSSTDLILSGGEDCKYKAS  149 (323)
Q Consensus        81 ~~~v~~~~~sp---~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~------~~v~~~~~~~~~~~l~~~~~d~~i~~i  149 (323)
                      ...+..|.|..   +|...+.-....|.|.++.....  ...+.+-.      ....++.|++.+..++++..+|.+.  
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~--  146 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSIS--  146 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEE--
Confidence            45566667653   44422222233467777765443  22222111      1245788999999999999999998  


Q ss_pred             eEEeCCC---CeeeEeecCCCceeEEEEec-CCCEEEEEeCC-eEEEEeCCCC---eeeecCCCCccEEEEEEcC-CCCE
Q psy11524        150 FVWDTDG---RQLYSSLTHDHPISSLAWAP-GGDMFAVGSYN-TLRLCDKVGW---SHSLDKPDTGSVYDLVWSN-DATQ  220 (323)
Q Consensus       150 ~v~d~~~---~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~~-~i~i~d~~~~---~~~~~~~~~~~v~~~~~~~-~~~~  220 (323)
                       +-+.+.   +.+..++.|+.++....|+. +.+.+.+|++| .+..||++-.   ...-.+.|...|.++.-+| .+.+
T Consensus       147 -~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~  225 (339)
T KOG0280|consen  147 -GVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTY  225 (339)
T ss_pred             -EEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCce
Confidence             666643   33446788999999999986 45788899997 9999998832   2222445888899998887 6789


Q ss_pred             EEEEecCc-EEEEEcC-CCceeeeecCCCCccceEEEEEccCCC------CccceEEEEeCCCCeEEEecccccCCCCcc
Q psy11524        221 IAGACANV-IHIFDIS-SSSSSNVTAPLSHSHEITQLAVNQTGS------LQERHVAFIDKNRDLYLSMWSHSLDKPDTG  292 (323)
Q Consensus       221 l~~~~~d~-i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~p~g~------~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  292 (323)
                      +++|+.|. |++||.+ -++++..   ....+.|+.+.++|.-.      ..-+-.++.+.+....-........+.|.+
T Consensus       226 I~TGsYDe~i~~~DtRnm~kPl~~---~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdS  302 (339)
T KOG0280|consen  226 IATGSYDECIRVLDTRNMGKPLFK---AKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDS  302 (339)
T ss_pred             EEEeccccceeeeehhcccCcccc---CccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccc
Confidence            99999999 9999999 5777765   45568999999999753      000112222222211112222225566777


Q ss_pred             ceeEEEEeeCCCeeEeee-cCCeEE-EEE
Q psy11524        293 SVYDLVWSSDATQIAGAC-ANGSLL-LGT  319 (323)
Q Consensus       293 ~v~~~~~s~~g~~l~s~~-~dg~i~-~~~  319 (323)
                      -...-.|......|++++ .|..++ +|-
T Consensus       303 l~YG~DWd~~~~~lATCsFYDk~~~~~Wl  331 (339)
T KOG0280|consen  303 LCYGGDWDSKDSFLATCSFYDKKIRQLWL  331 (339)
T ss_pred             eeeccccccccceeeeeeccccceeeeee
Confidence            777777855445788764 566655 664

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.32  E-value=1.4e-08  Score=83.80  Aligned_cols=238  Identities=10%  Similarity=0.020  Sum_probs=132.0

Q ss_pred             cceeeecCCCCCEEEEEEcCCCCeEEEEee---------CCeEEEEeCCCCc--eeEeecc-------CCCeEEEEECCC
Q psy11524         72 LSLCRTLNVSPPVYSAAWSPDSNKVLLTQA---------KSLVIKPLSPNNK--ATKWQAH-------DGLILKVAWCSS  133 (323)
Q Consensus        72 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---------~~~~v~~~~~~~~--~~~~~~~-------~~~v~~~~~~~~  133 (323)
                      .++...+.-...-..+ +||||+.|+++..         +...|.+||..+.  ...+.-.       ......++++||
T Consensus        37 ~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~d  115 (352)
T TIGR02658        37 GRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPD  115 (352)
T ss_pred             CEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCC
Confidence            4444555433334445 9999999999887         6679999998876  3334321       122347899999


Q ss_pred             CCEEEEEcC--CCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCCeEEE--EeCCCCee----eecCC
Q psy11524        134 TDLILSGGE--DCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRL--CDKVGWSH----SLDKP  204 (323)
Q Consensus       134 ~~~l~~~~~--d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i--~d~~~~~~----~~~~~  204 (323)
                      |++|++...  +..+.   +.|+. ++.+..+.. .....-...++ ...++.+.++....  .|-.++..    ..+..
T Consensus       116 gk~l~V~n~~p~~~V~---VvD~~~~kvv~ei~v-p~~~~vy~t~e-~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~  190 (352)
T TIGR02658       116 NKTLLFYQFSPSPAVG---VVDLEGKAFVRMMDV-PDCYHIFPTAN-DTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHP  190 (352)
T ss_pred             CCEEEEecCCCCCEEE---EEECCCCcEEEEEeC-CCCcEEEEecC-CccEEEeecCceEEEEecCCCceEEeeeeeecC
Confidence            999987763  68898   99996 444444543 22222222222 22222222221111  11122211    11111


Q ss_pred             CCccE-EEEEEcC-CCCEEEEEecCc-EEEEEcCCC-----ceeeeecCCC-----CccceEEEEEccCCCCccceEEEE
Q psy11524        205 DTGSV-YDLVWSN-DATQIAGACANV-IHIFDISSS-----SSSNVTAPLS-----HSHEITQLAVNQTGSLQERHVAFI  271 (323)
Q Consensus       205 ~~~~v-~~~~~~~-~~~~l~~~~~d~-i~iwd~~~~-----~~~~~~~~~~-----~~~~v~~~~~~p~g~~~d~~l~~~  271 (323)
                      ...++ ....|.+ +|+++.+..+ | |.+.|+...     +....+....     ..+...-++++|++    +.+.+.
T Consensus       191 ~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg----~~lyV~  265 (352)
T TIGR02658       191 EDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRAR----DRIYLL  265 (352)
T ss_pred             CccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCC----CEEEEE
Confidence            01111 1114466 8888877777 7 999995443     2222211111     12233458999998    566553


Q ss_pred             eC----------CCCeEEEecccc----cCCCCccceeEEEEeeCCC-eeEeee-cCCeEEEEEee
Q psy11524        272 DK----------NRDLYLSMWSHS----LDKPDTGSVYDLVWSSDAT-QIAGAC-ANGSLLLGTII  321 (323)
Q Consensus       272 ~~----------~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~-~l~s~~-~dg~i~~~~l~  321 (323)
                      ..          .+.+.+++..+.    .... +..+..++++|||+ +|++.. .++.|.+.|..
T Consensus       266 ~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~  330 (352)
T TIGR02658       266 ADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAE  330 (352)
T ss_pred             ecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence            21          123444444442    1111 56889999999999 777555 67889998864

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.30  E-value=1.8e-09  Score=88.85  Aligned_cols=208  Identities=12%  Similarity=0.067  Sum_probs=143.0

Q ss_pred             EEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeecc-------CC-----CeEEEE-ECC-CCCEEEEEcCCCceEeeeEE
Q psy11524         88 AWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQAH-------DG-----LILKVA-WCS-STDLILSGGEDCKYKASFVW  152 (323)
Q Consensus        88 ~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~-------~~-----~v~~~~-~~~-~~~~l~~~~~d~~i~~i~v~  152 (323)
                      ..+.||+.+++.  ..|.|+++|..+. +..+.-.       ..     +..-+. |++ +|.+++..|. |...   +.
T Consensus       273 ~~nsDGkrIvFq--~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaF---i~  346 (668)
T COG4946         273 NANSDGKRIVFQ--NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAF---IM  346 (668)
T ss_pred             ccCCCCcEEEEe--cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEE---EE
Confidence            345688999874  3468999998765 2222110       00     111111 333 5788888874 5566   77


Q ss_pred             eCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC-C-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-E
Q psy11524        153 DTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-I  229 (323)
Q Consensus       153 d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i  229 (323)
                      +.......++. +...|.-..+.-+++-++.|.. + .+-++|..+.+.....+.-+.|.++..+|+|++++.+.... |
T Consensus       347 ~~~~~~~iqv~-~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el  425 (668)
T COG4946         347 RPWDGYSIQVG-KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFEL  425 (668)
T ss_pred             CCCCCeeEEcC-CCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEE
Confidence            76555554443 4556887778777778888877 4 99999999988888877888999999999999999988888 9


Q ss_pred             EEEEcCCCceeeeecCCCCccceEEEEEccCCC---------CccceEEEEeCCCCeEEEecccccCCCCccceeEEEEe
Q psy11524        230 HIFDISSSSSSNVTAPLSHSHEITQLAVNQTGS---------LQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWS  300 (323)
Q Consensus       230 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~---------~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  300 (323)
                      .+.|+.+|.....  -....+-|+.+.|+|+++         -..+.|.+++.++. .++++.+     ..+.-.+.+|.
T Consensus       426 ~vididngnv~~i--dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~-Kiy~vTT-----~ta~DfsPaFD  497 (668)
T COG4946         426 WVIDIDNGNVRLI--DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG-KIYDVTT-----PTAYDFSPAFD  497 (668)
T ss_pred             EEEEecCCCeeEe--cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC-eEEEecC-----CcccccCcccC
Confidence            9999999987664  455667899999999984         22234445555543 2233332     24445678899


Q ss_pred             eCCCeeEeee
Q psy11524        301 SDATQIAGAC  310 (323)
Q Consensus       301 ~~g~~l~s~~  310 (323)
                      |||++|.--+
T Consensus       498 ~d~ryLYfLs  507 (668)
T COG4946         498 PDGRYLYFLS  507 (668)
T ss_pred             CCCcEEEEEe
Confidence            9999887443

>KOG4547|consensus

Probab=99.30  E-value=1.3e-09  Score=91.83  Aligned_cols=188  Identities=12%  Similarity=0.104  Sum_probs=135.2

Q ss_pred             cCCCCeEEEEeeCCeEEEEeCCCCc-ee-Eee---ccCCCeEEEEEC------C--------------CCCEEEEEcCCC
Q psy11524         90 SPDSNKVLLTQAKSLVIKPLSPNNK-AT-KWQ---AHDGLILKVAWC------S--------------STDLILSGGEDC  144 (323)
Q Consensus        90 sp~~~~l~~~~~~~~~v~~~~~~~~-~~-~~~---~~~~~v~~~~~~------~--------------~~~~l~~~~~d~  144 (323)
                      .|.+.++|....+ |.+++|+.... .+ .+.   .-.+...+..|.      |              |...++-|...|
T Consensus         2 ~~~~~~~A~~~~~-g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g   80 (541)
T KOG4547|consen    2 PPALDYFALSTGD-GRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG   80 (541)
T ss_pred             CchhheEeecCCC-CeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence            3456778877666 69999998765 22 221   123334444442      1              224677777889


Q ss_pred             ceEeeeEEeCC-CCeeeEee--cCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCC
Q psy11524        145 KYKASFVWDTD-GRQLYSSL--THDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDAT  219 (323)
Q Consensus       145 ~i~~i~v~d~~-~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~  219 (323)
                      .|.   +|++. ++....+.  .|.+.|.++.++.+-..|.+++.+ .+..|+.... ...........+.+++.+|||+
T Consensus        81 ~v~---~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   81 SVL---LYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             cEE---EEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence            888   99996 44444544  588999999999888899999997 9999998755 4456666777899999999999


Q ss_pred             EEEEEecCcEEEEEcCCCceeeeecCCCCccceEEEEEccC--CCCccceEEEEeCCCCeEEEeccc
Q psy11524        220 QIAGACANVIHIFDISSSSSSNVTAPLSHSHEITQLAVNQT--GSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       220 ~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~--g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      .+++++.. |++||+++++.+.+  +.+|.++|+++.|...  |.-.+..+........+.+|.+..
T Consensus       158 ~l~~as~~-ik~~~~~~kevv~~--ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  158 ILLTASRQ-IKVLDIETKEVVIT--FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEeccce-EEEEEccCceEEEE--ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            99887633 99999999999999  8999999999999876  101124444445555566666554

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=99.29  E-value=6.5e-10  Score=94.62  Aligned_cols=178  Identities=20%  Similarity=0.201  Sum_probs=122.0

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCC---eEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcC-CCceEeeeEEeC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKS---LVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGE-DCKYKASFVWDT  154 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~---~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~i~v~d~  154 (323)
                      ....+...+|+|+++.+++.....   ..++++++... ...+....+.-...+|+|||+.|+.+.. ||.. +||++|+
T Consensus       191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~-~iy~~dl  269 (425)
T COG0823         191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSP-DIYLMDL  269 (425)
T ss_pred             cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCc-cEEEEcC
Confidence            456788899999999988775332   24788887765 2222223444456799999988776654 5544 5778898


Q ss_pred             CCCeeeEeecCCCceeEEEEecCCCEEEEEeC--C--eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecC---
Q psy11524        155 DGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY--N--TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN---  227 (323)
Q Consensus       155 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---  227 (323)
                      .++.+..+....+.-..-.|+|||+.++..++  +  .|.++|..+..........+.-....|+|||++++..+..   
T Consensus       270 ~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~  349 (425)
T COG0823         270 DGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQ  349 (425)
T ss_pred             CCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCc
Confidence            87777666665555557889999999998887  4  7888888876544433333333388999999999987743   


Q ss_pred             c-EEEEEcCCCceeeeecCCCCccceEEEEEccCC
Q psy11524        228 V-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTG  261 (323)
Q Consensus       228 ~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g  261 (323)
                      - |.+.|+.++...+.   ...........|.|++
T Consensus       350 ~~i~~~~~~~~~~~~~---lt~~~~~e~ps~~~ng  381 (425)
T COG0823         350 WDIDKNDLASGGKIRI---LTSTYLNESPSWAPNG  381 (425)
T ss_pred             eeeEEeccCCCCcEEE---ccccccCCCCCcCCCC
Confidence            2 77778776664332   3344445556777777

>KOG0309|consensus

Probab=99.29  E-value=2e-11  Score=105.13  Aligned_cols=273  Identities=15%  Similarity=0.150  Sum_probs=178.7

Q ss_pred             cceeEeeEeccCCcceeeeeecccc----ccccceeeecCC--CCCEEEEEEcCCC---CeEEEEeeCCeEEEEeCCCCc
Q psy11524         44 DGTVINYPISPYISVLHSYAASHSW----PQALSLCRTLNV--SPPVYSAAWSPDS---NKVLLTQAKSLVIKPLSPNNK  114 (323)
Q Consensus        44 ~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~v~~~~~sp~~---~~l~~~~~~~~~v~~~~~~~~  114 (323)
                      .+.+..+.++|.|..++....-|.+    |......+-+.|  .-.|....|+|..   .+++..+..  .-.+|++...
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~q--kaiiwnlA~s  101 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQ--KAIIWNLAKS  101 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcc--hhhhhhhhcC
Confidence            4566778888888666533333322    222222222333  3457778888753   345554443  3445554432


Q ss_pred             -----eeEeeccCCCeEEEEECCCC-CEEEEEcCCCceEeeeEEeCC--CCeeeEeecCCCceeEEEEec-CCCEEEEEe
Q psy11524        115 -----ATKWQAHDGLILKVAWCSST-DLILSGGEDCKYKASFVWDTD--GRQLYSSLTHDHPISSLAWAP-GGDMFAVGS  185 (323)
Q Consensus       115 -----~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~i~v~d~~--~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~  185 (323)
                           ...+.+|...|+.+-|+|+. ..+++++.|..+.   .||++  ......+..-......++|+- ++..+|+..
T Consensus       102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh---~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlassh  178 (1081)
T KOG0309|consen  102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVH---AWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSH  178 (1081)
T ss_pred             CccceEEEEecCccceeccccCCCCCcceeeccccccce---eeeccCCCcceeeeecccccCceeeecccCcchhhhcc
Confidence                 34467899999999999964 6899999999999   99996  455556655566678899987 455555544


Q ss_pred             CCeEEEEeCCC--CeeeecCCCCccEEEEEEcC-CCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCC
Q psy11524        186 YNTLRLCDKVG--WSHSLDKPDTGSVYDLVWSN-DATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTG  261 (323)
Q Consensus       186 ~~~i~i~d~~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g  261 (323)
                      ...|++||++.  ..+..+++|...+..++|.. ....+.+.+.|+ ++.||.......... ......+++...+.|-|
T Consensus       179 g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~-~vtt~~piw~~r~~Pfg  257 (1081)
T KOG0309|consen  179 GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR-TVTTNFPIWRGRYLPFG  257 (1081)
T ss_pred             CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce-eccccCcceeccccccC
Confidence            45999999873  35667777888899999876 334678888999 999997654322221 24456788888888877


Q ss_pred             C-------CccceEEEEeCCCCeEEEecccc-----cCCCCccceeEEEEeeCCC----------eeEeeecCCeEEEEE
Q psy11524        262 S-------LQERHVAFIDKNRDLYLSMWSHS-----LDKPDTGSVYDLVWSSDAT----------QIAGACANGSLLLGT  319 (323)
Q Consensus       262 ~-------~~d~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g~----------~l~s~~~dg~i~~~~  319 (323)
                      .       .+++.+-....+.....|+....     .+.+|...|..+-|-..+.          .|++-+.|..+++|.
T Consensus       258 ~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp  337 (1081)
T KOG0309|consen  258 EGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP  337 (1081)
T ss_pred             ceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence            4       22233333333333344444333     5667888887777755332          799999999999998


Q ss_pred             eec
Q psy11524        320 IIQ  322 (323)
Q Consensus       320 l~~  322 (323)
                      +-+
T Consensus       338 I~~  340 (1081)
T KOG0309|consen  338 IDS  340 (1081)
T ss_pred             ccH
Confidence            743

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.28  E-value=9.8e-10  Score=90.98  Aligned_cols=266  Identities=14%  Similarity=0.112  Sum_probs=168.3

Q ss_pred             ccceeEeeEeccCCcceeeeeeccc--cccccc-eeeecCCCCCEEEEEEcCCCCeEEEEeeCC--------------eE
Q psy11524         43 YDGTVINYPISPYISVLHSYAASHS--WPQALS-LCRTLNVSPPVYSAAWSPDSNKVLLTQAKS--------------LV  105 (323)
Q Consensus        43 ~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~--------------~~  105 (323)
                      -.-++....+||.|..++...+.+.  |+.... .+..+ ....|..+.|||.+++|.+-....              ..
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~-~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~  109 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRF-RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNN  109 (561)
T ss_pred             cCcchhheeecCcchheehhhccceEEccccchhheeee-ecCCceecccCcccceeeeeccCCccChhhccCCccccCc
Confidence            4567888999999988776666653  443221 12222 356799999999999998764321              14


Q ss_pred             EEEeCCCCc--eeEeec------------------------------cC---------------CCeEEEEECCCC--CE
Q psy11524        106 IKPLSPNNK--ATKWQA------------------------------HD---------------GLILKVAWCSST--DL  136 (323)
Q Consensus       106 v~~~~~~~~--~~~~~~------------------------------~~---------------~~v~~~~~~~~~--~~  136 (323)
                      +.+||...+  +..+..                              |.               ..|....|+|.+  ..
T Consensus       110 ~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~  189 (561)
T COG5354         110 VFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDE  189 (561)
T ss_pred             eeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCce
Confidence            788886543  111111                              11               245556666643  23


Q ss_pred             EEE-----EcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEe------------CCeEEEEeCCCCe
Q psy11524        137 ILS-----GGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGS------------YNTLRLCDKVGWS  198 (323)
Q Consensus       137 l~~-----~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~------------~~~i~i~d~~~~~  198 (323)
                      ||.     .+..+.++   +|.+- +..+.+..-.+..=..+.|.+.|++++.--            +.+++|++++...
T Consensus       190 la~~tPEk~~kpa~~~---i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~  266 (561)
T COG5354         190 LAYWTPEKLNKPAMVR---ILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS  266 (561)
T ss_pred             EEEEccccCCCCcEEE---EEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc
Confidence            333     23455666   77763 333332222223334678889888865421            1268899988776


Q ss_pred             eeecCCCCccEEEEEEcCCCCEEEEEe--cCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEE---e
Q psy11524        199 HSLDKPDTGSVYDLVWSNDATQIAGAC--ANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFI---D  272 (323)
Q Consensus       199 ~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~---~  272 (323)
                      +.......++|...+|.|.++.+++.+  .+. +.++|++.. ...    ....+.-..+.|+|.+    +++.+.   +
T Consensus       267 i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~----~~Pe~~rNT~~fsp~~----r~il~agF~n  337 (561)
T COG5354         267 IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRF----YFPEQKRNTIFFSPHE----RYILFAGFDN  337 (561)
T ss_pred             cceeccccccceeeeecccCCceeEEecccccceeecccccc-eEE----ecCCcccccccccCcc----cEEEEecCCc
Confidence            666656789999999999988877766  355 999998865 332    3444566678899998    666663   4


Q ss_pred             CCCCeEEEecccccC---CCCccceeEEEEeeCCCeeEeee------cCCeEEEEEee
Q psy11524        273 KNRDLYLSMWSHSLD---KPDTGSVYDLVWSSDATQIAGAC------ANGSLLLGTII  321 (323)
Q Consensus       273 ~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~s~~------~dg~i~~~~l~  321 (323)
                      ..|.+.+|+......   ........-+.|+|||+++.+..      .|..|.+|++.
T Consensus       338 l~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         338 LQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             cccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence            567788887766311   11123345578999999887654      37789999975

>KOG1064|consensus

Probab=99.28  E-value=4.9e-11  Score=111.73  Aligned_cols=183  Identities=11%  Similarity=0.113  Sum_probs=140.9

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEe-eccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKW-QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG  156 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~  156 (323)
                      +-..|.+|.=+|...+.++|+.+ |.+++|.-..+  +..+ ......|+.+.|+.+|+.+..+..||.+.   +|....
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~d-gsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~---l~q~~p 2282 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQD-GSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLS---LWQASP 2282 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCC-ceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCcee---ecccCC
Confidence            45788899999999999988777 68888765544  3333 33448899999999999999999999999   999998


Q ss_pred             CeeeEeecCCCceeEEEEecCCCEEEEEeC---C-eEEEEeC--CCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-E
Q psy11524        157 RQLYSSLTHDHPISSLAWAPGGDMFAVGSY---N-TLRLCDK--VGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-I  229 (323)
Q Consensus       157 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---~-~i~i~d~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i  229 (323)
                      +.....+.|......+.|-.  ..+++++.   + .+.+||.  .....-....|.+.++++++-|..+.|++|+.+| |
T Consensus      2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred             cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcE
Confidence            88888999999999999974  66777665   4 8999994  3332223377999999999999999999999999 9


Q ss_pred             EEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        230 HIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       230 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      ++||++..+.+.+  +..         +. ..    .++..++.+|.+.||.+..
T Consensus      2361 ~l~D~rqrql~h~--~~~---------~~-~~----~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHT--FQA---------LD-TR----EYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred             EEeehHHHHHHHH--hhh---------hh-hh----heeeccCcccceEEEEccc
Confidence            9999998887776  333         22 11    3455555555555555544

>KOG0974|consensus

Probab=99.27  E-value=5.1e-10  Score=99.93  Aligned_cols=191  Identities=16%  Similarity=0.110  Sum_probs=142.8

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeeccCCC-----eEEEEECCCCCEEEEEcCCCceEeeeEEeC
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQAHDGL-----ILKVAWCSSTDLILSGGEDCKYKASFVWDT  154 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~  154 (323)
                      .+.+....+.-+.+.++.+..++ .+.+|+.... +..-..+...     ..-+.++++.-++++|+.-+.|.   +|..
T Consensus        87 s~wi~g~~l~~e~k~i~l~~~~n-s~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~ii---vW~~  162 (967)
T KOG0974|consen   87 SDWIFGAKLFEENKKIALVTSRN-SLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEII---VWKP  162 (967)
T ss_pred             cccccccchhhhcceEEEEEcCc-eEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEE---EEec
Confidence            45555566666778888877775 8888887665 2221223322     22334566777899999999999   9998


Q ss_pred             C-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCee--eecCCCCccEEEEEEcCCCCEEEEEecCc-E
Q psy11524        155 D-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSH--SLDKPDTGSVYDLVWSNDATQIAGACANV-I  229 (323)
Q Consensus       155 ~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i  229 (323)
                      . .+....+.+|++.+.++.|+-||+++++.++| ++++|++.+.+.  ....+|+.++..++|.|+  .+++++.|. .
T Consensus       163 ~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctc  240 (967)
T KOG0974|consen  163 HEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTC  240 (967)
T ss_pred             cccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEE
Confidence            4 33333688999999999999999999999998 999999986533  256789999999999998  899999999 9


Q ss_pred             EEEEcCCCceeeeecCCCCc-cceEEEEEccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        230 HIFDISSSSSSNVTAPLSHS-HEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       230 ~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      ++|+.. +..+..  +.+|. ..++.++..++.    ..+..+..|+.+.+|+...
T Consensus       241 rvW~~~-~~~l~~--y~~h~g~~iw~~~~~~~~----~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  241 RVWGVN-GTQLEV--YDEHSGKGIWKIAVPIGV----IIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EEEecc-cceehh--hhhhhhcceeEEEEcCCc----eEEEeeccCcchhhhhhhc
Confidence            999754 444444  55554 478889888876    5666677777777777655

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.26  E-value=2.8e-08  Score=77.03  Aligned_cols=216  Identities=17%  Similarity=0.191  Sum_probs=125.0

Q ss_pred             EEEEcCCCCeEEEEeeCCeEEEEeCCCCc----eeEeec---cCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCe
Q psy11524         86 SAAWSPDSNKVLLTQAKSLVIKPLSPNNK----ATKWQA---HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQ  158 (323)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~  158 (323)
                      .++.+++|+.||+..+.  .|.+-.....    +.+.+-   ....-+.++||||+.+||.+...|+|+   ++|+.+..
T Consensus         2 ~~~~~~~Gk~lAi~qd~--~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~---vfdl~g~~   76 (282)
T PF15492_consen    2 HLALSSDGKLLAILQDQ--CIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIR---VFDLMGSE   76 (282)
T ss_pred             ceeecCCCcEEEEEecc--EEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEE---EEecccce
Confidence            36778899999877444  4444433322    222222   223457899999999999999999999   99998777


Q ss_pred             eeEeecC-------CCceeEEEEecCC-------CEEEEEeCCeEEEEeC---CCCe------eeecCCCCccEEEEEEc
Q psy11524        159 LYSSLTH-------DHPISSLAWAPGG-------DMFAVGSYNTLRLCDK---VGWS------HSLDKPDTGSVYDLVWS  215 (323)
Q Consensus       159 ~~~~~~~-------~~~v~~~~~~p~~-------~~l~~~~~~~i~i~d~---~~~~------~~~~~~~~~~v~~~~~~  215 (323)
                      +..+...       ...|..+.|-+-.       .+|+..-.+.++-|-+   +.+.      ......+...|.++.++
T Consensus        77 lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~  156 (282)
T PF15492_consen   77 LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH  156 (282)
T ss_pred             eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence            6665432       2456667775421       2333333354444432   1111      11222346689999999


Q ss_pred             CCCCEEEEEecC------------cEEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecc
Q psy11524        216 NDATQIAGACAN------------VIHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWS  283 (323)
Q Consensus       216 ~~~~~l~~~~~d------------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~  283 (323)
                      |..+.|++|+..            |+.-|.+-++.+-... .......+..   .+      ....++..- ...++.. 
T Consensus       157 p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~---~~------~~~~~~~~~-~~~~fs~-  224 (282)
T PF15492_consen  157 PKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ-VTSSEDDITA---SS------KRRGLLRIP-SFKFFSR-  224 (282)
T ss_pred             CCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE-ccccCccccc---cc------cccceeecc-ceeeeec-
Confidence            998888876532            1455555444433321 0111111110   00      011111111 1111111 


Q ss_pred             cccCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        284 HSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       284 ~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                         .......|..|..||||+.||+...+|.|.+|++.
T Consensus       225 ---~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP  259 (282)
T PF15492_consen  225 ---QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP  259 (282)
T ss_pred             ---cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence               11126789999999999999999999999999984

>KOG2314|consensus

Probab=99.25  E-value=6.6e-09  Score=87.12  Aligned_cols=262  Identities=13%  Similarity=0.151  Sum_probs=168.4

Q ss_pred             EeeEeccCCcceeeeeeccc--ccc-ccceeeecCCCCCEEEEEEcCCCCeEEEEee----------CCeEEEEeCCCCc
Q psy11524         48 INYPISPYISVLHSYAASHS--WPQ-ALSLCRTLNVSPPVYSAAWSPDSNKVLLTQA----------KSLVIKPLSPNNK  114 (323)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----------~~~~v~~~~~~~~  114 (323)
                      +-+.|||-|..|.++..-|.  |.+ .-..++.+.| ..|.-+.|||..+||++-+.          +...+.+||..++
T Consensus       214 tyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG  292 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG  292 (698)
T ss_pred             eeEEecCCceEEEEEeccceeeecCccHHHHHhccC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence            34689999988877776663  542 2233344444 56889999999999998652          2247999998876


Q ss_pred             --eeEeeccC--C-CeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeE-eecCCCceeEEEEecCCCEEEEEeC--
Q psy11524        115 --ATKWQAHD--G-LILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYS-SLTHDHPISSLAWAPGGDMFAVGSY--  186 (323)
Q Consensus       115 --~~~~~~~~--~-~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~~~~~--  186 (323)
                        .+.+....  . .-.-..||.|++++|--.. ..|.   ||+...-.+.. -.-.-..|....|+|.++.||.=..  
T Consensus       293 ~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis---IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~  368 (698)
T KOG2314|consen  293 LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS---IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET  368 (698)
T ss_pred             chhcceeccCCCccccceEEeccCCceeEEecc-ceEE---EEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence              34444322  2 2234689999999987665 4577   88875322211 1223456888999999998886543  


Q ss_pred             -C---eEEEEeCCC-CeeeecCCCCccEEEEEEcCCCCEEEEEec----------Cc-EEEEEcCCCceeeeecCCCCcc
Q psy11524        187 -N---TLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQIAGACA----------NV-IHIFDISSSSSSNVTAPLSHSH  250 (323)
Q Consensus       187 -~---~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~-i~iwd~~~~~~~~~~~~~~~~~  250 (323)
                       +   .+.+..+.. +.++...-+.-.-..+-|-.+|.+|+.--.          -. +.|+.++....--.  ......
T Consensus       369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve--~velke  446 (698)
T KOG2314|consen  369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE--VVELKE  446 (698)
T ss_pred             cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce--eeecch
Confidence             2   466666543 344433334334456778788888875321          12 66777765543222  245567


Q ss_pred             ceEEEEEccCCCCccceEEEEeC---CCCeEEEecccc------cCCCCccceeEEEEeeCCCeeEee---ecCCeEEEE
Q psy11524        251 EITQLAVNQTGSLQERHVAFIDK---NRDLYLSMWSHS------LDKPDTGSVYDLVWSSDATQIAGA---CANGSLLLG  318 (323)
Q Consensus       251 ~v~~~~~~p~g~~~d~~l~~~~~---~~~~~~~~~~~~------~~~~~~~~v~~~~~s~~g~~l~s~---~~dg~i~~~  318 (323)
                      .|...+|-|.|    ...++...   ...+.+|.++..      +........+.+.|+|.|++++.+   |..|.+.++
T Consensus       447 ~vi~FaWEP~g----dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~  522 (698)
T KOG2314|consen  447 SVIAFAWEPHG----DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFY  522 (698)
T ss_pred             heeeeeeccCC----CeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEE
Confidence            89999999999    44444332   345677777632      233334667899999999988854   456778888


Q ss_pred             Ee
Q psy11524        319 TI  320 (323)
Q Consensus       319 ~l  320 (323)
                      |+
T Consensus       523 D~  524 (698)
T KOG2314|consen  523 DT  524 (698)
T ss_pred             ec
Confidence            75

>KOG2315|consensus

Probab=99.22  E-value=8.6e-09  Score=86.46  Aligned_cols=208  Identities=12%  Similarity=0.159  Sum_probs=138.1

Q ss_pred             CCCCEEEEEEcCCCCeEEEEe------eCCeEEEEeCCCCc-------eeEeeccCCCeEEEEECCCCCE-EE--EEcCC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQ------AKSLVIKPLSPNNK-------ATKWQAHDGLILKVAWCSSTDL-IL--SGGED  143 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~------~~~~~v~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~-l~--~~~~d  143 (323)
                      |...|+...+||.+..-.++.      +.-..+++|.....       .+++  ....=..+.|++-|+- |+  +..-|
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVD  241 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVD  241 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc--cccceeEEEeccCCceEEEEEEEeec
Confidence            678899999999754322221      12247888876522       1122  1222246789887763 22  22223


Q ss_pred             C---------ceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC--C-eEEEEeCCCCeeeecCCCCccEEE
Q psy11524        144 C---------KYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY--N-TLRLCDKVGWSHSLDKPDTGSVYD  211 (323)
Q Consensus       144 ~---------~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--~-~i~i~d~~~~~~~~~~~~~~~v~~  211 (323)
                      .         +++   ++++++.....-....++|.++.|+|+|+.|+++-.  - .+.|||+++..+.-+  ..++-.+
T Consensus       242 ktn~SYYGEq~Ly---ll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df--~egpRN~  316 (566)
T KOG2315|consen  242 KTNASYYGEQTLY---LLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDF--PEGPRNT  316 (566)
T ss_pred             CCCccccccceEE---EEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeC--CCCCccc
Confidence            3         455   777776665555556899999999999998777655  3 899999998766544  4567788


Q ss_pred             EEEcCCCCEEEEEecC---c-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEe------CCCCeEEEe
Q psy11524        212 LVWSNDATQIAGACAN---V-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFID------KNRDLYLSM  281 (323)
Q Consensus       212 ~~~~~~~~~l~~~~~d---~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~------~~~~~~~~~  281 (323)
                      +-|+|.|++|+.++-+   | +.+||+.+.+.+..  +...  .-+-+.|+|||    .++.+..      .|+.+.+|+
T Consensus       317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~--~~a~--~tt~~eW~PdG----e~flTATTaPRlrvdNg~Kiwh  388 (566)
T KOG2315|consen  317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAK--FKAA--NTTVFEWSPDG----EYFLTATTAPRLRVDNGIKIWH  388 (566)
T ss_pred             eEECCCCCEEEEeecCCCCCceEEEeccchhhccc--cccC--CceEEEEcCCC----cEEEEEeccccEEecCCeEEEE
Confidence            9999999999988765   5 99999999888776  3433  34557899999    5665553      456677787


Q ss_pred             cccc-cCCCCcc-ceeEEEEeeC
Q psy11524        282 WSHS-LDKPDTG-SVYDLVWSSD  302 (323)
Q Consensus       282 ~~~~-~~~~~~~-~v~~~~~s~~  302 (323)
                      .... ++.-+-. ....+.|-|.
T Consensus       389 ytG~~l~~~~f~sEL~qv~W~P~  411 (566)
T KOG2315|consen  389 YTGSLLHEKMFKSELLQVEWRPF  411 (566)
T ss_pred             ecCceeehhhhhHhHhheeeeec
Confidence            7663 1111112 4667777764

>KOG3914|consensus

Probab=99.22  E-value=3.7e-10  Score=90.71  Aligned_cols=161  Identities=10%  Similarity=0.057  Sum_probs=116.4

Q ss_pred             CCEEEEEEcCCCCeEEEEeeCCeE-EEEeCCCCc---eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCC
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAKSLV-IKPLSPNNK---ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGR  157 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~~~~-v~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~  157 (323)
                      .....+..+|.++.+|++...... +..++.+.+   ......-....+++.|..+...+..+..-|.++.+.+|.....
T Consensus        63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            344556678888888887666532 555554443   2222333445566666666666666666666664447776656


Q ss_pred             eeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-ee-eecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEE
Q psy11524        158 QLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-SH-SLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFD  233 (323)
Q Consensus       158 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd  233 (323)
                      +...+.+|-.-++.++|+||+++++++..| .|++-..... .+ ....+|...|..++.-++. .|++++.|+ +++||
T Consensus       143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd  221 (390)
T KOG3914|consen  143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWD  221 (390)
T ss_pred             CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEe
Confidence            677778899999999999999999999997 9998775532 22 3566799999999998764 589999999 99999


Q ss_pred             cCCCceeeee
Q psy11524        234 ISSSSSSNVT  243 (323)
Q Consensus       234 ~~~~~~~~~~  243 (323)
                      +++|+.+.++
T Consensus       222 ~~sgk~L~t~  231 (390)
T KOG3914|consen  222 ITSGKLLDTC  231 (390)
T ss_pred             cccCCccccc
Confidence            9999988763

>KOG2041|consensus

Probab=99.21  E-value=3.8e-09  Score=91.21  Aligned_cols=232  Identities=15%  Similarity=0.199  Sum_probs=161.6

Q ss_pred             eec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeE--eeccCCCeEEEEECCCCCEEEEEcCCCceEeee
Q psy11524         76 RTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATK--WQAHDGLILKVAWCSSTDLILSGGEDCKYKASF  150 (323)
Q Consensus        76 ~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~  150 (323)
                      +++ +|...|.-+.|+.+.+.|-+ ++.+|.|.+|.+-++  ...  -...+..|.+++|+.||..++..-.||.|.   
T Consensus        65 QtLeGH~~sV~vvTWNe~~QKLTt-SDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavI---  140 (1189)
T KOG2041|consen   65 QTLEGHNASVMVVTWNENNQKLTT-SDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVI---  140 (1189)
T ss_pred             hhhccCcceEEEEEeccccccccc-cCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEE---
Confidence            344 38999999999998888865 455589999987655  111  123456789999999999999999999999   


Q ss_pred             EEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCC--------eee----ecCCCCccEEEEEEc--
Q psy11524        151 VWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGW--------SHS----LDKPDTGSVYDLVWS--  215 (323)
Q Consensus       151 v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~--------~~~----~~~~~~~~v~~~~~~--  215 (323)
                      +=.++|..+....-.......+.|++|.+.++.+-. +.+.++|-.+.        +..    .+......+..+.|.  
T Consensus       141 VGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g  220 (1189)
T KOG2041|consen  141 VGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTG  220 (1189)
T ss_pred             EEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccC
Confidence            888887776554433444568899999988888777 49999997642        111    111122346667765  


Q ss_pred             ------CCCCEEEEEecCc-EEEEEcCCC-ceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCC---------CeE
Q psy11524        216 ------NDATQIAGACANV-IHIFDISSS-SSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNR---------DLY  278 (323)
Q Consensus       216 ------~~~~~l~~~~~d~-i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~---------~~~  278 (323)
                            |+...|+++-.+| +.|..-.+. +++-    ......+..+.|+|+|    ..++++..+.         .+.
T Consensus       221 ~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv----~dtgm~~vgakWnh~G----~vLAvcG~~~da~~~~d~n~v~  292 (1189)
T KOG2041|consen  221 PYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVV----VDTGMKIVGAKWNHNG----AVLAVCGNDSDADEPTDSNKVH  292 (1189)
T ss_pred             ccccCCCCCCEEEEEEcCceehhhhhcCCCCCeE----EecccEeecceecCCC----cEEEEccCcccccCccccceEE
Confidence                  4777899999999 888764443 3332    3344678899999999    7777764322         233


Q ss_pred             EEecccc---cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        279 LSMWSHS---LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       279 ~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      ++..-..   .++.++..|++++|-..|-.++.+ .|+.|++-++
T Consensus       293 Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanI  336 (1189)
T KOG2041|consen  293 FYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANI  336 (1189)
T ss_pred             EeccchhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEee
Confidence            3332221   445567899999998777666655 4778887665

>KOG2041|consensus

Probab=99.21  E-value=5.5e-10  Score=96.23  Aligned_cols=229  Identities=13%  Similarity=0.164  Sum_probs=156.3

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-----------------eeEeeccCCCeEEEEECCCCCEEEEEcC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-----------------ATKWQAHDGLILKVAWCSSTDLILSGGE  142 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-----------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~  142 (323)
                      ......|++|+....++++|+.+ |.+++..+.+.                 -+++.+|.+.|.-+.|+.+.+.|-+...
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~d-GlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt   91 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGAD-GLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT   91 (1189)
T ss_pred             CCceEEEEEEcccCCeEEecccc-ceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence            56678999999999999999887 68887754321                 2357899999999999998889999999


Q ss_pred             CCceEeeeEEeC-CCCeeeEe--ecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCC
Q psy11524        143 DCKYKASFVWDT-DGRQLYSS--LTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDA  218 (323)
Q Consensus       143 d~~i~~i~v~d~-~~~~~~~~--~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~  218 (323)
                      +|-|.   +|-+ .+.-....  ...++-|.+++|+.||..+...-.| .|.+=.+.+..+--..-.......+.|++|.
T Consensus        92 ~GlIi---VWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~  168 (1189)
T KOG2041|consen   92 SGLII---VWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDL  168 (1189)
T ss_pred             CceEE---EEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccH
Confidence            99999   9988 44433332  2245678999999999998888775 6666666654332111112234578999999


Q ss_pred             CEEEEEecCc-EEEEEcCCCceee-------e--ecCCCCccceEEEEEccCCC----CccceEEEEeCCCCeEEEeccc
Q psy11524        219 TQIAGACANV-IHIFDISSSSSSN-------V--TAPLSHSHEITQLAVNQTGS----LQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       219 ~~l~~~~~d~-i~iwd~~~~~~~~-------~--~~~~~~~~~v~~~~~~p~g~----~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      +.++.+-.+| +.+||....-..+       .  -.+......+..+.|.....    ..-..++++-.+|...+..-..
T Consensus       169 ~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN  248 (1189)
T KOG2041|consen  169 EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN  248 (1189)
T ss_pred             HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence            9988888899 9999954321110       0  00112223355666642211    1225777887788777654333


Q ss_pred             c----cCCCCccceeEEEEeeCCCeeEeeecCC
Q psy11524        285 S----LDKPDTGSVYDLVWSSDATQIAGACANG  313 (323)
Q Consensus       285 ~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg  313 (323)
                      .    +... +-.+....|+++|..|+.++.|.
T Consensus       249 D~~Pvv~dt-gm~~vgakWnh~G~vLAvcG~~~  280 (1189)
T KOG2041|consen  249 DPEPVVVDT-GMKIVGAKWNHNGAVLAVCGNDS  280 (1189)
T ss_pred             CCCCeEEec-ccEeecceecCCCcEEEEccCcc
Confidence            1    1111 45678899999999999888653

>KOG0280|consensus

Probab=99.16  E-value=2.8e-09  Score=82.47  Aligned_cols=181  Identities=18%  Similarity=0.281  Sum_probs=123.9

Q ss_pred             EEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc----eeEeeccCCCeEEEEECC-CCCEEEEEcCCCceEeeeEEeCC--C
Q psy11524         84 VYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK----ATKWQAHDGLILKVAWCS-STDLILSGGEDCKYKASFVWDTD--G  156 (323)
Q Consensus        84 v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~i~v~d~~--~  156 (323)
                      ..++.|++.+..+++.-.+ |.+...+....    .+.++.|..+++...|+- +.+.+++|+.|+.+.   .||++  +
T Consensus       124 ~lslD~~~~~~~i~vs~s~-G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~---~~D~R~p~  199 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSR-GSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLS---CWDIRIPK  199 (339)
T ss_pred             eeEEEeeccCceEEEEcCC-CcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEE---EEEecCCc
Confidence            5678899999988766444 67764333222    457889999999999986 457999999999999   99997  2


Q ss_pred             CeeeE-eecCCCceeEEEEec-CCCEEEEEeCC-eEEEEeCCCCeeee-cCCCCccEEEEEEcCC--CCEEEEEecCcEE
Q psy11524        157 RQLYS-SLTHDHPISSLAWAP-GGDMFAVGSYN-TLRLCDKVGWSHSL-DKPDTGSVYDLVWSND--ATQIAGACANVIH  230 (323)
Q Consensus       157 ~~~~~-~~~~~~~v~~~~~~p-~~~~l~~~~~~-~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~--~~~l~~~~~d~i~  230 (323)
                      +.+.. ...|...|.++.-+| .+.++++|+.| .|++||.+...... .....+.|..+.++|.  ++.|+++-.+|.+
T Consensus       200 ~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~k  279 (339)
T KOG0280|consen  200 TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAK  279 (339)
T ss_pred             ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCce
Confidence            33332 456888999998887 68899999997 99999998543332 2335688999999993  4456666666677


Q ss_pred             EEEcCCCcee---eeecCCCCccceEEEEEccCCCCccceEEEEe
Q psy11524        231 IFDISSSSSS---NVTAPLSHSHEITQLAVNQTGSLQERHVAFID  272 (323)
Q Consensus       231 iwd~~~~~~~---~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~  272 (323)
                      |-+...+...   .......|.+-+..-.|...    +..++.++
T Consensus       280 i~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~----~~~lATCs  320 (339)
T KOG0280|consen  280 ILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK----DSFLATCS  320 (339)
T ss_pred             EEEecccccchheeeeccccccceeeccccccc----cceeeeee
Confidence            7776654322   11113445555555555322    24566543

>KOG1354|consensus

Probab=99.14  E-value=5.6e-10  Score=88.07  Aligned_cols=218  Identities=13%  Similarity=0.151  Sum_probs=137.8

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-----eeEeecc-----CCCeEEEEECCC-CCEEEEEcCCCceEe
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-----ATKWQAH-----DGLILKVAWCSS-TDLILSGGEDCKYKA  148 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-----~~~~~~~-----~~~v~~~~~~~~-~~~l~~~~~d~~i~~  148 (323)
                      |+..|++++++.|++.++++  |+..|.+|.+.-.     +..++.+     ..-|++..|+|. .+.++..+..|+|+ 
T Consensus       163 HtyhiNSIS~NsD~Et~lSA--DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr-  239 (433)
T KOG1354|consen  163 HTYHINSISVNSDKETFLSA--DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR-  239 (433)
T ss_pred             ceeEeeeeeecCccceEeec--cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE-
Confidence            78889999999999999874  4468999987643     2333333     356889999995 56888888899999 


Q ss_pred             eeEEeCCCCee-----eEe------------ecCCCceeEEEEecCCCEEEEEeCCeEEEEeCC--CCeeeecCCCC---
Q psy11524        149 SFVWDTDGRQL-----YSS------------LTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKV--GWSHSLDKPDT---  206 (323)
Q Consensus       149 i~v~d~~~~~~-----~~~------------~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~--~~~~~~~~~~~---  206 (323)
                        +-|++...+     ..+            ..--..|..+.|+++|+++++-..-+|++||+.  .+++....-|.   
T Consensus       240 --LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr  317 (433)
T KOG1354|consen  240 --LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLR  317 (433)
T ss_pred             --EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHH
Confidence              999952221     111            111245889999999999998776799999985  34444333232   


Q ss_pred             ---------cc---EEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccc--eEEEEEccCCCCccceEEEE
Q psy11524        207 ---------GS---VYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHE--ITQLAVNQTGSLQERHVAFI  271 (323)
Q Consensus       207 ---------~~---v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~--v~~~~~~p~g~~~d~~l~~~  271 (323)
                               +.   -..++|+-++.++++|+..+ .++|+...|..... ++......  ...+ ..+      +.+...
T Consensus       318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~-tl~asr~~~~~~~~-~k~------~~V~~~  389 (433)
T KOG1354|consen  318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDF-TLEASRKNMKPRKV-LKL------RLVSSS  389 (433)
T ss_pred             HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceee-cccccccCCccccc-ccc------eeeecC
Confidence                     11   24688999999999999999 99999766543321 01211111  1111 011      122222


Q ss_pred             eCCCCeEEEecccccCCCCccceeEEEEeeCCCeeEeeecCCe
Q psy11524        272 DKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGS  314 (323)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~  314 (323)
                      .......++-.   .... ...+...+|+|..+.+|.+..+..
T Consensus       390 g~r~~~~~~vd---~ldf-~kkilh~aWhp~en~ia~aatnnl  428 (433)
T KOG1354|consen  390 GKRKRDEISVD---ALDF-RKKILHTAWHPKENSIAVAATNNL  428 (433)
T ss_pred             CCccccccccc---hhhh-hhHHHhhccCCccceeeeeecCce
Confidence            22211111100   0111 456778899999998888876653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.14  E-value=3.9e-08  Score=93.53  Aligned_cols=194  Identities=10%  Similarity=0.065  Sum_probs=124.2

Q ss_pred             CEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeecc-----------------CCCeEEEEECC-CCCEEEEEcCC
Q psy11524         83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQAH-----------------DGLILKVAWCS-STDLILSGGED  143 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~d  143 (323)
                      ....+++++++..|+++...+..|+.++..+. +.++.+.                 -.....++++| ++..+++.+.+
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~  704 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ  704 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence            46889999998888777666568888887654 3333210                 12346899999 55666777778


Q ss_pred             CceEeeeEEeCCCCeeeEeecC---------------CCceeEEEEecCCCEEEEEeC-C-eEEEEeCCCCeeeecC---
Q psy11524        144 CKYKASFVWDTDGRQLYSSLTH---------------DHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSHSLDK---  203 (323)
Q Consensus       144 ~~i~~i~v~d~~~~~~~~~~~~---------------~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~~~~~---  203 (323)
                      +.|+   +||.....+..+.+.               -.....++++|++..|+++.. + .|++||+.+.......   
T Consensus       705 ~~I~---v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~  781 (1057)
T PLN02919        705 HQIW---EYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGD  781 (1057)
T ss_pred             CeEE---EEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence            8899   999865554433221               123567999999987666665 4 9999998743222110   


Q ss_pred             ----------C---------CCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeec-----------CCCCccce
Q psy11524        204 ----------P---------DTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTA-----------PLSHSHEI  252 (323)
Q Consensus       204 ----------~---------~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~-----------~~~~~~~v  252 (323)
                                +         .-.....++++++|+.+++-+.++ |++||..++.......           ....-...
T Consensus       782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P  861 (1057)
T PLN02919        782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEP  861 (1057)
T ss_pred             cccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCc
Confidence                      0         011346899999999877777788 9999988776543210           00111246


Q ss_pred             EEEEEccCCCCccceEEEEe-CCCCeEEEeccc
Q psy11524        253 TQLAVNQTGSLQERHVAFID-KNRDLYLSMWSH  284 (323)
Q Consensus       253 ~~~~~~p~g~~~d~~l~~~~-~~~~~~~~~~~~  284 (323)
                      ..++++++|+     +.+.+ .++.+++|++.+
T Consensus       862 ~GIavd~dG~-----lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        862 AGLALGENGR-----LFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             eEEEEeCCCC-----EEEEECCCCEEEEEECCC
Confidence            7889999873     33333 334455555543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.09  E-value=9.8e-07  Score=70.74  Aligned_cols=214  Identities=13%  Similarity=0.071  Sum_probs=125.6

Q ss_pred             EEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEeeccCCCeEEEEEC-CCCCEEEEEcCCCceEeeeEEeCCCCeeeEee
Q psy11524         85 YSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWC-SSTDLILSGGEDCKYKASFVWDTDGRQLYSSL  163 (323)
Q Consensus        85 ~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~  163 (323)
                      .++.|.+....|+...-..+.|+.|+..+.......... ...+++. +++. ++.+...+ +.   ++|+....+..+.
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~-l~v~~~~~-~~---~~d~~~g~~~~~~   76 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGR-LYVADSGG-IA---VVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSE-EEEEETTC-EE---EEETTTTEEEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCCE-EEEEEcCc-eE---EEecCCCcEEEEe
Confidence            368899866666666655678999998877544333333 6677777 6654 44555444 45   6698755544432


Q ss_pred             c------CCCceeEEEEecCCCEEEEEeCC---------eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEe-cC
Q psy11524        164 T------HDHPISSLAWAPGGDMFAVGSYN---------TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGAC-AN  227 (323)
Q Consensus       164 ~------~~~~v~~~~~~p~~~~l~~~~~~---------~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d  227 (323)
                      .      .....+.+++.|+|++.++....         .++.++.. .........-.....++|+|+++.|+.+. ..
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~  155 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN  155 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred             eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence            2      23568899999999977766542         25666666 33333333445678999999999887554 45


Q ss_pred             c-EEEEEcCCCce-e---ee-ecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc---cCCCCccceeEEE
Q psy11524        228 V-IHIFDISSSSS-S---NV-TAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---LDKPDTGSVYDLV  298 (323)
Q Consensus       228 ~-i~iwd~~~~~~-~---~~-~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~  298 (323)
                      + |..+++..... +   .. ..+....+..-.+++..+|+    .....-..+.+.+++....   ........+++++
T Consensus       156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~----l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~  231 (246)
T PF08450_consen  156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN----LWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCA  231 (246)
T ss_dssp             TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-----EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEE
T ss_pred             ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC----EEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEE
Confidence            5 99998853221 1   11 01233333477888988873    2222223444444444322   1112235789999


Q ss_pred             Ee-eCCCeeEee
Q psy11524        299 WS-SDATQIAGA  309 (323)
Q Consensus       299 ~s-~~g~~l~s~  309 (323)
                      |. ++.+.|+..
T Consensus       232 fgg~~~~~L~vT  243 (246)
T PF08450_consen  232 FGGPDGKTLYVT  243 (246)
T ss_dssp             EESTTSSEEEEE
T ss_pred             EECCCCCEEEEE
Confidence            94 666666544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1409|consensus

Probab=99.06  E-value=7.2e-09  Score=81.91  Aligned_cols=229  Identities=10%  Similarity=0.055  Sum_probs=162.7

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc----eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK----ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD  155 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~  155 (323)
                      |.+.+++...-|...-+++.+.+. .+++|-....    .......+.+++++.+.++...|+.+-..|++.   -+.+.
T Consensus        23 ~~d~vn~~~l~~~e~gv~~~s~dr-tvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt---efs~s   98 (404)
T KOG1409|consen   23 SQDDVNAAILIPKEEGVISVSEDR-TVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT---EFALS   98 (404)
T ss_pred             chhhhhhheeccCCCCeEEccccc-eeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE---EEEhh
Confidence            677888888888888888887774 8999954433    112234567899999999999999999999998   77762


Q ss_pred             -----CCeeeEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCC--CCeeeecCCCCccEEEEEEcCCCCEEEEEecCc
Q psy11524        156 -----GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKV--GWSHSLDKPDTGSVYDLVWSNDATQIAGACANV  228 (323)
Q Consensus       156 -----~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  228 (323)
                           ....+....|...+..+-|+-....+++.+.|+-..|-..  +..+-... ......++.+.-.  +...|...+
T Consensus        99 edfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~--~~fvGd~~g  175 (404)
T KOG1409|consen   99 EDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDAL--YAFVGDHSG  175 (404)
T ss_pred             hhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeE--EEEeccccc
Confidence                 3445666789999999999988889999998855566632  21111000 0011111111111  344454455


Q ss_pred             -EEEEEcC--CCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----cCCCCccceeEEEEe
Q psy11524        229 -IHIFDIS--SSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----LDKPDTGSVYDLVWS  300 (323)
Q Consensus       229 -i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s  300 (323)
                       |.+-.+.  .-.++.+  +.+|...+.+++|.|..    +.+..+..+..+.+|++...     ...+|...|..+..-
T Consensus       176 qvt~lr~~~~~~~~i~~--~~~h~~~~~~l~Wd~~~----~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~  249 (404)
T KOG1409|consen  176 QITMLKLEQNGCQLITT--FNGHTGEVTCLKWDPGQ----RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA  249 (404)
T ss_pred             ceEEEEEeecCCceEEE--EcCcccceEEEEEcCCC----cEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence             4444333  3344445  78999999999999986    78888888889999998764     455677888888888


Q ss_pred             eCCCeeEeeecCCeEEEEEee
Q psy11524        301 SDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       301 ~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +--+.|.+++.||.|.+|+..
T Consensus       250 ~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  250 QHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             hhheeeeeccCCCeEEEEecc
Confidence            888899999999999999874

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.06  E-value=9.2e-07  Score=73.23  Aligned_cols=220  Identities=12%  Similarity=0.078  Sum_probs=130.6

Q ss_pred             eccCCcceeeeee---------cc----ccc-cccceeeecCCC--------CCEEEEEEcCCCCeEEEEeeC-CeEEEE
Q psy11524         52 ISPYISVLHSYAA---------SH----SWP-QALSLCRTLNVS--------PPVYSAAWSPDSNKVLLTQAK-SLVIKP  108 (323)
Q Consensus        52 ~~~~~~~~~~~~~---------~~----~~~-~~~~~~~~~~~~--------~~v~~~~~sp~~~~l~~~~~~-~~~v~~  108 (323)
                      +|||++.++....         ..    .|| .+.+....+...        .....++++|||++|++...+ ...|-+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            9999987764443         11    133 455555555432        233489999999999988755 578999


Q ss_pred             eCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC--CCCeee-E---eecCCCce-eEEEEec-CC
Q psy11524        109 LSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT--DGRQLY-S---SLTHDHPI-SSLAWAP-GG  178 (323)
Q Consensus       109 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~--~~~~~~-~---~~~~~~~v-~~~~~~p-~~  178 (323)
                      .|+..+  +.++.- .+...-...+++...  +-+.||...   ...+  +++... .   +.....++ ..-.|.+ +|
T Consensus       133 vD~~~~kvv~ei~v-p~~~~vy~t~e~~~~--~~~~Dg~~~---~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg  206 (352)
T TIGR02658       133 VDLEGKAFVRMMDV-PDCYHIFPTANDTFF--MHCRDGSLA---KVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSG  206 (352)
T ss_pred             EECCCCcEEEEEeC-CCCcEEEEecCCccE--EEeecCceE---EEEecCCCceEEeeeeeecCCccccccCCceEcCCC
Confidence            998776  333332 222222222222222  223355554   3333  222111 1   11100010 0114566 88


Q ss_pred             CEEEEEeCCeEEEEeCCCCee------eecCC-------CCccEEEEEEcCCCCEEEEEe----------cCc-EEEEEc
Q psy11524        179 DMFAVGSYNTLRLCDKVGWSH------SLDKP-------DTGSVYDLVWSNDATQIAGAC----------ANV-IHIFDI  234 (323)
Q Consensus       179 ~~l~~~~~~~i~i~d~~~~~~------~~~~~-------~~~~v~~~~~~~~~~~l~~~~----------~d~-i~iwd~  234 (323)
                      +++.+...++|++.|+.+...      .....       ..+...-++++|+++++++..          ..+ |.++|.
T Consensus       207 ~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~  286 (352)
T TIGR02658       207 RLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA  286 (352)
T ss_pred             cEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence            888777779999999654321      11110       223344599999999888743          124 999999


Q ss_pred             CCCceeeeecCCCCccceEEEEEccCCCCccc-eEEEEe-CCCCeEEEeccc
Q psy11524        235 SSSSSSNVTAPLSHSHEITQLAVNQTGSLQER-HVAFID-KNRDLYLSMWSH  284 (323)
Q Consensus       235 ~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~-~l~~~~-~~~~~~~~~~~~  284 (323)
                      .+++.+..+  . ....+..++++||+    + .+..-+ .++.+.+.+..+
T Consensus       287 ~t~kvi~~i--~-vG~~~~~iavS~Dg----kp~lyvtn~~s~~VsViD~~t  331 (352)
T TIGR02658       287 KTGKRLRKI--E-LGHEIDSINVSQDA----KPLLYALSTGDKTLYIFDAET  331 (352)
T ss_pred             CCCeEEEEE--e-CCCceeeEEECCCC----CeEEEEeCCCCCcEEEEECcC
Confidence            999999873  2 34588999999998    6 777666 456688888766

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=99.06  E-value=1.4e-08  Score=86.56  Aligned_cols=186  Identities=15%  Similarity=0.138  Sum_probs=122.3

Q ss_pred             eecccceeEeeEeccCCcceeeeeeccccc--------cccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeE--EEEe
Q psy11524         40 IRRYDGTVINYPISPYISVLHSYAASHSWP--------QALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLV--IKPL  109 (323)
Q Consensus        40 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~--v~~~  109 (323)
                      +..-...+..-.|+|+++.++.+.....+.        .+.+..+.+.....-...+|+|||++|+.+...++.  |+++
T Consensus       188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~  267 (425)
T COG0823         188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLM  267 (425)
T ss_pred             ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEE
Confidence            334445566678888888776553333221        111222233345666678999999999998866544  7777


Q ss_pred             CCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC--
Q psy11524        110 SPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY--  186 (323)
Q Consensus       110 ~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--  186 (323)
                      |+.++ ...+....+.-..-.|+|||+.++..+..+.--+|++++.+++....+......-....|+|||++++..+.  
T Consensus       268 dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~  347 (425)
T COG0823         268 DLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSG  347 (425)
T ss_pred             cCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccC
Confidence            87776 334544444445789999999888777654444677888888777776655555557889999999998884  


Q ss_pred             C--eEEEEeCCCCe-eeecCCCCccEEEEEEcCCCCEEEEEec
Q psy11524        187 N--TLRLCDKVGWS-HSLDKPDTGSVYDLVWSNDATQIAGACA  226 (323)
Q Consensus       187 ~--~i~i~d~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~  226 (323)
                      +  .|.+.|+.... .+.+ ..........|.|+|+.+...+.
T Consensus       348 g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         348 GQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             CceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEecc
Confidence            3  47777765433 3333 24445566788899887766544

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.05  E-value=3.8e-08  Score=81.80  Aligned_cols=231  Identities=15%  Similarity=0.152  Sum_probs=146.3

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceE----------
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYK----------  147 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~----------  147 (323)
                      ..-++..++|||.|.+|++....  .|.+|.....  +..+  ....|..+.|+|.+++|.+-+..+.+.          
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~--~V~~~~g~~~~~l~~~--~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~  106 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAA--GVECWGGPSKAKLVRF--RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS  106 (561)
T ss_pred             cCcchhheeecCcchheehhhcc--ceEEccccchhheeee--ecCCceecccCcccceeeeeccCCccChhhccCCccc
Confidence            45688999999999999876444  5777775544  3333  234578999999999999877644311          


Q ss_pred             --eeeEEeCC-CCeeeEeecCCCc--ee-EEEEecCCCEEEEEeCCeEEEEeCCCC-eeeecCC-CCccEEEEEEcCCC-
Q psy11524        148 --ASFVWDTD-GRQLYSSLTHDHP--IS-SLAWAPGGDMFAVGSYNTLRLCDKVGW-SHSLDKP-DTGSVYDLVWSNDA-  218 (323)
Q Consensus       148 --~i~v~d~~-~~~~~~~~~~~~~--v~-~~~~~p~~~~l~~~~~~~i~i~d~~~~-~~~~~~~-~~~~v~~~~~~~~~-  218 (323)
                        ++++||.. +..+..+.....+  .. -+.|+-+..++|-...+.++++++... ...-+.. ....+....|+|.| 
T Consensus       107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n  186 (561)
T COG5354         107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGN  186 (561)
T ss_pred             cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCC
Confidence              34599996 5555666554444  34 578888888877665568999997432 1111111 23568899999954 


Q ss_pred             -CEEEE-----EecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEE-Ee----------CCCCeEEE
Q psy11524        219 -TQIAG-----ACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAF-ID----------KNRDLYLS  280 (323)
Q Consensus       219 -~~l~~-----~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~-~~----------~~~~~~~~  280 (323)
                       ..|+.     ..... +++|.+..+..+.+-.+.  ...-..+.|.+.|    .++.+ ..          .+..+++.
T Consensus       187 ~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf--k~~~~qLkW~~~g----~~ll~l~~t~~ksnKsyfgesnLyl~  260 (561)
T COG5354         187 HDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF--KVSGVQLKWQVLG----KYLLVLVMTHTKSNKSYFGESNLYLL  260 (561)
T ss_pred             CceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE--eecccEEEEecCC----ceEEEEEEEeeecccceeccceEEEE
Confidence             34443     34456 999999877776652122  2233457888887    33322 21          12234455


Q ss_pred             ecccc---cCCCCccceeEEEEeeCCCeeEeee--cCCeEEEEEe
Q psy11524        281 MWSHS---LDKPDTGSVYDLVWSSDATQIAGAC--ANGSLLLGTI  320 (323)
Q Consensus       281 ~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~--~dg~i~~~~l  320 (323)
                      .+...   +...-.++|..++|+|.++.+++.+  .+-.+.++++
T Consensus       261 ~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l  305 (561)
T COG5354         261 RITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL  305 (561)
T ss_pred             eecccccceeccccccceeeeecccCCceeEEecccccceeeccc
Confidence            54433   2212278999999999998777554  5666666655

>KOG4532|consensus

Probab=99.03  E-value=1.4e-07  Score=72.45  Aligned_cols=222  Identities=8%  Similarity=-0.000  Sum_probs=134.0

Q ss_pred             EEEEEcC-----CCCeEEEEeeCCeEEEEeCCCCc---eeEeeccCCCeEEEEECCC-CCEEEEEcCCCceEeeeEEeCC
Q psy11524         85 YSAAWSP-----DSNKVLLTQAKSLVIKPLSPNNK---ATKWQAHDGLILKVAWCSS-TDLILSGGEDCKYKASFVWDTD  155 (323)
Q Consensus        85 ~~~~~sp-----~~~~l~~~~~~~~~v~~~~~~~~---~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~i~v~d~~  155 (323)
                      +.|.|-|     ...+||.++.. |...+|....+   ......|...|.-+.=..| .-.+..++.|.+++   +.+++
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~-g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k---~~~~~  146 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGAS-GQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGK---TMVVS  146 (344)
T ss_pred             ecccccchHhhccccEEEecccc-ceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCccee---EEEEe
Confidence            3455555     33467766555 68999987755   3333344443322211112 23466678888888   88886


Q ss_pred             CCeeeEeecCC-CceeEEEEecCCCEEEEEeC-CeEEEEeCCCC--eee--ecCCCCccEEEEEEcCCCCEEEEEecCc-
Q psy11524        156 GRQLYSSLTHD-HPISSLAWAPGGDMFAVGSY-NTLRLCDKVGW--SHS--LDKPDTGSVYDLVWSNDATQIAGACANV-  228 (323)
Q Consensus       156 ~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~--~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~-  228 (323)
                      +.......... -.+.++++++|++++++.++ ..|..|.+...  .+.  ......+.-.+..|+.....+|++..|| 
T Consensus       147 ~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~  226 (344)
T KOG4532|consen  147 GDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGT  226 (344)
T ss_pred             cCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCc
Confidence            44433322211 34889999999999999988 48888887643  221  2333455667889999999999999999 


Q ss_pred             EEEEEcCCCceee-ee--cCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----------cCCCCc-cc
Q psy11524        229 IHIFDISSSSSSN-VT--APLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----------LDKPDT-GS  293 (323)
Q Consensus       229 i~iwd~~~~~~~~-~~--~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----------~~~~~~-~~  293 (323)
                      +.|||++...... +.  +-..|.+.++.+.|+|.|.  ...|.+-.--+.+.+.+.+..           ....|. ..
T Consensus       227 ~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~--lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~  304 (344)
T KOG4532|consen  227 CAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL--LDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQH  304 (344)
T ss_pred             EEEEEecccccchhhhcccCCCCCCceEEEEecCCCc--ceEEEEecCcceEEEEEcccCceeeEEecCccccccccccc
Confidence            9999998754222 10  1235889999999998663  112222222223333333321           112222 34


Q ss_pred             eeEEEEeeCCCeeEeeecC
Q psy11524        294 VYDLVWSSDATQIAGACAN  312 (323)
Q Consensus       294 v~~~~~s~~g~~l~s~~~d  312 (323)
                      +..-.|+.++.-+.+.+.+
T Consensus       305 ifgt~f~~~n~s~~v~~e~  323 (344)
T KOG4532|consen  305 IFGTNFNNENESNDVKNEL  323 (344)
T ss_pred             cccccccCCCcccccccch
Confidence            7777788777665555543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.03  E-value=1.3e-08  Score=79.65  Aligned_cols=231  Identities=12%  Similarity=0.131  Sum_probs=147.7

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-------eeEeeccC------------CCeEEEEECCCC--CEEE
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-------ATKWQAHD------------GLILKVAWCSST--DLIL  138 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-------~~~~~~~~------------~~v~~~~~~~~~--~~l~  138 (323)
                      ....|+++.|...|.|+++| +.+|.|.++.....       ...++.|.            ..|..+.|..++  ..++
T Consensus        25 ead~ItaVefd~tg~YlatG-DkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL  103 (460)
T COG5170          25 EADKITAVEFDETGLYLATG-DKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL  103 (460)
T ss_pred             ccceeeEEEeccccceEeec-CCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence            56789999999999999976 45578888865433       22344553            357888887654  3567


Q ss_pred             EEcCCCceEeeeEEeCCCC--------------------ee-----------------------eEe-ecCCCceeEEEE
Q psy11524        139 SGGEDCKYKASFVWDTDGR--------------------QL-----------------------YSS-LTHDHPISSLAW  174 (323)
Q Consensus       139 ~~~~d~~i~~i~v~d~~~~--------------------~~-----------------------~~~-~~~~~~v~~~~~  174 (323)
                      ..+.|.+|+   +|-+..+                    ++                       +.. ..|...+.++.|
T Consensus       104 lstNdktiK---lWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~  180 (460)
T COG5170         104 LSTNDKTIK---LWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF  180 (460)
T ss_pred             EecCCceee---eeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence            778899999   9977221                    00                       000 245667889999


Q ss_pred             ecCCCEEEEEeCCeEEEEeCC--CC--eeeecCCCC-----ccEEEEEEcCC-CCEEEEEecCc-EEEEEcCCCce----
Q psy11524        175 APGGDMFAVGSYNTLRLCDKV--GW--SHSLDKPDT-----GSVYDLVWSND-ATQIAGACANV-IHIFDISSSSS----  239 (323)
Q Consensus       175 ~p~~~~l~~~~~~~i~i~d~~--~~--~~~~~~~~~-----~~v~~~~~~~~-~~~l~~~~~d~-i~iwd~~~~~~----  239 (323)
                      +.|...++++.+=.|.+|++.  ..  .+.-.++|.     .-|++..|+|. ...+...+..| |++-|++....    
T Consensus       181 NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~  260 (460)
T COG5170         181 NSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS  260 (460)
T ss_pred             cCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence            988888777654499999975  22  344444453     34889999994 34555666777 99999884321    


Q ss_pred             --eeeecC--------CCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----cCCCC------------cc
Q psy11524        240 --SNVTAP--------LSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----LDKPD------------TG  292 (323)
Q Consensus       240 --~~~~~~--------~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----~~~~~------------~~  292 (323)
                        +...++        .+....|..+.|+++|    ++|..-+. ..+.+|++.-.     +...|            ..
T Consensus       261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ng----ryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnD  335 (460)
T COG5170         261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNG----RYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEND  335 (460)
T ss_pred             hhhhhhccCcccchhHHHHhhhhcceEEcCCC----cEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhcc
Confidence              111001        1223468889999998    55544333 34566665432     11111            11


Q ss_pred             ce---eEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        293 SV---YDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       293 ~v---~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      .|   ..+.||.|.+.+.+|+.....-+|-
T Consensus       336 aifdkFeisfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         336 AIFDKFEISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             ceeeeEEEEecCCcccccccccccceeeec
Confidence            22   4578888888999988877666654

>KOG2314|consensus

Probab=99.02  E-value=1.3e-07  Score=79.69  Aligned_cols=227  Identities=11%  Similarity=0.163  Sum_probs=144.4

Q ss_pred             EEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCce--------EeeeEEe
Q psy11524         84 VYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKY--------KASFVWD  153 (323)
Q Consensus        84 v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i--------~~i~v~d  153 (323)
                      -+-+.|||-|.||++-...  -|.+|--..-  ++.+ .|+ .|.-+.|||..++|++-+..-.+        .++.|||
T Consensus       213 etyv~wSP~GTYL~t~Hk~--GI~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQ--GIALWGGESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eeeEEecCCceEEEEEecc--ceeeecCccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence            4678999999999987544  3677753322  3333 354 46789999999999987753222        2444999


Q ss_pred             CC-CCeeeEeec--CCCcee-EEEEecCCCEEEEEeCCeEEEEeCCCCeee-ecCCCCccEEEEEEcCCCCEEEEEec--
Q psy11524        154 TD-GRQLYSSLT--HDHPIS-SLAWAPGGDMFAVGSYNTLRLCDKVGWSHS-LDKPDTGSVYDLVWSNDATQIAGACA--  226 (323)
Q Consensus       154 ~~-~~~~~~~~~--~~~~v~-~~~~~p~~~~l~~~~~~~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~--  226 (323)
                      +. |...+.+..  ....+. -+.||.|++++|--..+.|.||+.....+. ...-....|....|+|.++.||.-+.  
T Consensus       289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~  368 (698)
T KOG2314|consen  289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET  368 (698)
T ss_pred             ccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence            95 555555554  222333 458999999999888789999997654322 11123456899999999988886443  


Q ss_pred             C---c-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeC----C---C---CeEEEecccc-----cC
Q psy11524        227 N---V-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDK----N---R---DLYLSMWSHS-----LD  287 (323)
Q Consensus       227 d---~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~----~---~---~~~~~~~~~~-----~~  287 (323)
                      +   . +.|..+.+++.+++  -.-+.-.-..+.|-.+|    .+|++--.    .   |   ...|+.+...     ..
T Consensus       369 ~~~parvtL~evPs~~~iRt--~nlfnVsDckLhWQk~g----dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v  442 (698)
T KOG2314|consen  369 NNIPARVTLMEVPSKREIRT--KNLFNVSDCKLHWQKSG----DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV  442 (698)
T ss_pred             cCCcceEEEEecCccceeee--ccceeeeccEEEeccCC----cEEEEEEEeeccccccceEeeEEEEEeeccCCCceee
Confidence            2   2 67778888877776  23333333456676666    55555311    1   1   1223333221     22


Q ss_pred             CCCccceeEEEEeeCCCeeEeeec---CCeEEEEEee
Q psy11524        288 KPDTGSVYDLVWSSDATQIAGACA---NGSLLLGTII  321 (323)
Q Consensus       288 ~~~~~~v~~~~~s~~g~~l~s~~~---dg~i~~~~l~  321 (323)
                      .. ...|...+|-|.|..+++-+.   ..++.+|.+.
T Consensus       443 el-ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e  478 (698)
T KOG2314|consen  443 EL-KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVE  478 (698)
T ss_pred             ec-chheeeeeeccCCCeEEEEEccccccceeEEEee
Confidence            23 578999999999987664332   3557777764

>KOG4547|consensus

Probab=98.99  E-value=1.9e-07  Score=79.05  Aligned_cols=180  Identities=14%  Similarity=0.182  Sum_probs=125.5

Q ss_pred             CCCCEEEEEcCCCceEeeeEEeCCCCeee-Eeec---CCCceeEEEEe------c-------------CCC-EEEEEeC-
Q psy11524        132 SSTDLILSGGEDCKYKASFVWDTDGRQLY-SSLT---HDHPISSLAWA------P-------------GGD-MFAVGSY-  186 (323)
Q Consensus       132 ~~~~~l~~~~~d~~i~~i~v~d~~~~~~~-~~~~---~~~~v~~~~~~------p-------------~~~-~l~~~~~-  186 (323)
                      |...++|....||.++   +|+.....++ .+..   ..+...+..|.      |             .+. .++-|.. 
T Consensus         3 ~~~~~~A~~~~~g~l~---iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~   79 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLR---IWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ   79 (541)
T ss_pred             chhheEeecCCCCeEE---EEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence            4467899999999999   9999644333 2321   23334444442      1             122 3444444 


Q ss_pred             CeEEEEeCCCCeee-e--cCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCC
Q psy11524        187 NTLRLCDKVGWSHS-L--DKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGS  262 (323)
Q Consensus       187 ~~i~i~d~~~~~~~-~--~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~  262 (323)
                      +.|.+|+..+..+. .  ...|.+.|.++.++.+-..|.+++.|. +..|+...++....  .......+.+++.+|||.
T Consensus        80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~--~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRI--WKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeee--eccCCCccceEEEcCCCC
Confidence            49999998765544 2  245889999999999988999999999 99999999988887  677778899999999983


Q ss_pred             ---CccceEEEEeCCCCeEEEecccccCCCCccceeEEEEeeC-----CCeeE-eeecCCeEEEEEee
Q psy11524        263 ---LQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSD-----ATQIA-GACANGSLLLGTII  321 (323)
Q Consensus       263 ---~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~l~-s~~~dg~i~~~~l~  321 (323)
                         ...+.|.+|+.+....+.     .+.+|.++|++++|.-+     |.++. +...+..|.+|.+.
T Consensus       158 ~l~~as~~ik~~~~~~kevv~-----~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  158 ILLTASRQIKVLDIETKEVVI-----TFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             EEEeccceEEEEEccCceEEE-----EecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence               222344444444443333     45669999999999987     66555 55556667777653

>KOG4714|consensus

Probab=98.98  E-value=1.1e-08  Score=77.96  Aligned_cols=178  Identities=12%  Similarity=0.060  Sum_probs=107.7

Q ss_pred             CCCCEEEEEcCCCceEeeeEEeCCC--CeeeEeecCCCceeEEEEecCCCEEEEEe------CCeEEEEeCCCC-ee-ee
Q psy11524        132 SSTDLILSGGEDCKYKASFVWDTDG--RQLYSSLTHDHPISSLAWAPGGDMFAVGS------YNTLRLCDKVGW-SH-SL  201 (323)
Q Consensus       132 ~~~~~l~~~~~d~~i~~i~v~d~~~--~~~~~~~~~~~~v~~~~~~p~~~~l~~~~------~~~i~i~d~~~~-~~-~~  201 (323)
                      --++.++++..||.+.   +.+.+.  ....++......-.+.+....++.+.++.      .|..+.|+++-. .. ..
T Consensus        99 ~~~t~V~~~~~dg~~~---v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~  175 (319)
T KOG4714|consen   99 MTDNRVCIGYADGSLA---VFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS  175 (319)
T ss_pred             ccCCceEecCCCceEE---EEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccc
Confidence            3467899999999999   888753  11111111111111222333455554443      245677776632 11 12


Q ss_pred             cCCCCccEEEEEEcCCC-CEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEE
Q psy11524        202 DKPDTGSVYDLVWSNDA-TQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYL  279 (323)
Q Consensus       202 ~~~~~~~v~~~~~~~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~  279 (323)
                      .+ ....|.+++-+|.. ..+++|++|| +.+||.++......+ +..|+.+++.+-|+|...   ..+.+.+.+|.+..
T Consensus       176 ~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~-l~ahk~~i~eV~FHpk~p---~~Lft~sedGslw~  250 (319)
T KOG4714|consen  176 KK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL-LKAHKAEIWEVHFHPKNP---EHLFTCSEDGSLWH  250 (319)
T ss_pred             cc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH-HHHhhhhhhheeccCCCc---hheeEecCCCcEEE
Confidence            22 22349999999954 4667778888 999999987544332 678999999999999774   45555555555555


Q ss_pred             Eecccc----------------------------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        280 SMWSHS----------------------------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       280 ~~~~~~----------------------------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      |+..+.                            +.......|+++..  -|..|++|++-+.|++++
T Consensus       251 wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV--~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  251 WDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV--LGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             EcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeec--cCceEEeccccceEEEec
Confidence            554421                            11111223444433  578999999999999876

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.92  E-value=1.7e-06  Score=67.35  Aligned_cols=161  Identities=14%  Similarity=0.143  Sum_probs=106.3

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeec-------cCCCeEEEEECCC------CCEEEEEcCCCce
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQA-------HDGLILKVAWCSS------TDLILSGGEDCKY  146 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~-------~~~~v~~~~~~~~------~~~l~~~~~d~~i  146 (323)
                      ...=..++||||+..||.+... |.|+++|+.+. +..+..       -...|..+.|.+-      ...|++-..+|.+
T Consensus        43 ~PQWRkl~WSpD~tlLa~a~S~-G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L  121 (282)
T PF15492_consen   43 NPQWRKLAWSPDCTLLAYAEST-GTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL  121 (282)
T ss_pred             CchheEEEECCCCcEEEEEcCC-CeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence            3445789999999999988555 79999998765 333322       2346777777653      2256667778888


Q ss_pred             EeeeEEeCC---CCeeeEee---cCCCceeEEEEecCCCEEEEEeC-C-e----------EEEEeC-CCCe---------
Q psy11524        147 KASFVWDTD---GRQLYSSL---THDHPISSLAWAPGGDMFAVGSY-N-T----------LRLCDK-VGWS---------  198 (323)
Q Consensus       147 ~~i~v~d~~---~~~~~~~~---~~~~~v~~~~~~p~~~~l~~~~~-~-~----------i~i~d~-~~~~---------  198 (323)
                      +..+|-.-+   .+....+.   .++..|.++.++|..++|++|+. . .          +..|.+ .+.+         
T Consensus       122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~  201 (282)
T PF15492_consen  122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSE  201 (282)
T ss_pred             eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccC
Confidence            833342211   22333332   24678999999999888887764 1 1          444542 1100         


Q ss_pred             --e----------e-----e---cCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeee
Q psy11524        199 --H----------S-----L---DKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNV  242 (323)
Q Consensus       199 --~----------~-----~---~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~  242 (323)
                        +          .     .   .......|..+..||||+.|++...+| |.+|++.+-+....
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~  266 (282)
T PF15492_consen  202 DDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRS  266 (282)
T ss_pred             ccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcc
Confidence              0          0     0   011345689999999999999999999 99999988776665

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.91  E-value=7e-06  Score=65.82  Aligned_cols=174  Identities=16%  Similarity=0.108  Sum_probs=109.7

Q ss_pred             EEEEEEc-CCCCeEEEEeeCCeEEEEeCCCCc-eeEeec------cCCCeEEEEECCCCCEEEEEcCC--------CceE
Q psy11524         84 VYSAAWS-PDSNKVLLTQAKSLVIKPLSPNNK-ATKWQA------HDGLILKVAWCSSTDLILSGGED--------CKYK  147 (323)
Q Consensus        84 v~~~~~s-p~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d--------~~i~  147 (323)
                      ...+++. +++. ++++....  +.++|.... ...+..      .....+.+++.|+|++.++....        |.+.
T Consensus        42 ~~G~~~~~~~g~-l~v~~~~~--~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~  118 (246)
T PF08450_consen   42 PNGMAFDRPDGR-LYVADSGG--IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVY  118 (246)
T ss_dssp             EEEEEEECTTSE-EEEEETTC--EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEE
T ss_pred             CceEEEEccCCE-EEEEEcCc--eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceE
Confidence            7778888 6654 44454443  333365543 222211      34567899999999977765543        3455


Q ss_pred             eeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC-C-eEEEEeCC--CCee---e-e--cCCCCccEEEEEEcCC
Q psy11524        148 ASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKV--GWSH---S-L--DKPDTGSVYDLVWSND  217 (323)
Q Consensus       148 ~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~--~~~~---~-~--~~~~~~~v~~~~~~~~  217 (323)
                         .++.+ ..+......-...+.++|+|+++.|+++.. . .|..+++.  +..+   . .  .....+....+++..+
T Consensus       119 ---~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~  194 (246)
T PF08450_consen  119 ---RIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD  194 (246)
T ss_dssp             ---EEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT
T ss_pred             ---EECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC
Confidence               77777 444444444566789999999998877666 4 89999874  2211   1 1  1222235889999999


Q ss_pred             CCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEc-cCCCCccceEEEE
Q psy11524        218 ATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVN-QTGSLQERHVAFI  271 (323)
Q Consensus       218 ~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-p~g~~~d~~l~~~  271 (323)
                      |++.++....+ |.++|.+ |+.+..+.+.  ...+++++|. |+.    +.|.+-
T Consensus       195 G~l~va~~~~~~I~~~~p~-G~~~~~i~~p--~~~~t~~~fgg~~~----~~L~vT  243 (246)
T PF08450_consen  195 GNLWVADWGGGRIVVFDPD-GKLLREIELP--VPRPTNCAFGGPDG----KTLYVT  243 (246)
T ss_dssp             S-EEEEEETTTEEEEEETT-SCEEEEEE-S--SSSEEEEEEESTTS----SEEEEE
T ss_pred             CCEEEEEcCCCEEEEECCC-ccEEEEEcCC--CCCEEEEEEECCCC----CEEEEE
Confidence            98777766677 9999976 8888774333  3478999994 554    555543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4190|consensus

Probab=98.91  E-value=9.6e-09  Score=86.36  Aligned_cols=164  Identities=18%  Similarity=0.214  Sum_probs=118.5

Q ss_pred             ceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc---------eeEeeccCCCeEEEEECCCCCEEEEEcCC
Q psy11524         73 SLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK---------ATKWQAHDGLILKVAWCSSTDLILSGGED  143 (323)
Q Consensus        73 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  143 (323)
                      +++...+|.+.|..++--.+.+-+++++.|. +|++|.....         ..+++.|+.+|.++.|..+-++++++  |
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDK-TVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D  803 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDK-TVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D  803 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCc-eEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence            4445556889999988777777788887775 9999986532         34578899999999999988888766  8


Q ss_pred             CceEeeeEEeC-CCCeeeEee--cCCCceeEEEEec--CCCEEEEEeC-C-eEEEEeCCCC----eeeec--CCCCccEE
Q psy11524        144 CKYKASFVWDT-DGRQLYSSL--THDHPISSLAWAP--GGDMFAVGSY-N-TLRLCDKVGW----SHSLD--KPDTGSVY  210 (323)
Q Consensus       144 ~~i~~i~v~d~-~~~~~~~~~--~~~~~v~~~~~~p--~~~~l~~~~~-~-~i~i~d~~~~----~~~~~--~~~~~~v~  210 (323)
                      |.|.   +||. .++.+....  ...+.+..+..-|  +...+..++. . +++++|.+..    +.++.  .+..+.++
T Consensus       804 ~giH---lWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R  880 (1034)
T KOG4190|consen  804 GGIH---LWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR  880 (1034)
T ss_pred             Ccce---eecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence            8899   9998 455554332  1223334444444  3444555544 5 9999998742    22222  33446789


Q ss_pred             EEEEcCCCCEEEEEecCc-EEEEEcCCCceeee
Q psy11524        211 DLVWSNDATQIAGACANV-IHIFDISSSSSSNV  242 (323)
Q Consensus       211 ~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~  242 (323)
                      +++..|.|++++.+-.+| |.+.|.++|+.+..
T Consensus       881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINs  913 (1034)
T KOG4190|consen  881 AIAVADKGNKLAAALSNGCIAILDARNGKVINS  913 (1034)
T ss_pred             EEEeccCcchhhHHhcCCcEEEEecCCCceecc
Confidence            999999999999999999 99999999997765

>KOG3914|consensus

Probab=98.90  E-value=8.1e-08  Score=77.59  Aligned_cols=153  Identities=11%  Similarity=0.035  Sum_probs=108.2

Q ss_pred             CeEEEEECCCCCEEEEEcCCCceEeeeEEeCC--CC--eeeEeecCCCceeEEEEecCCCEEEEEeC-C---eEEEEeCC
Q psy11524        124 LILKVAWCSSTDLILSGGEDCKYKASFVWDTD--GR--QLYSSLTHDHPISSLAWAPGGDMFAVGSY-N---TLRLCDKV  195 (323)
Q Consensus       124 ~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~--~~--~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~---~i~i~d~~  195 (323)
                      .+..+..+|.++++|.+..+....   +++..  .+  .+..........+.+.|..+......+.. |   .+.+|...
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~---~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~  140 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRA---VFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD  140 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceE---EEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccc
Confidence            344566778888998888887776   66653  22  22222333444555666655555444443 3   56666655


Q ss_pred             CCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCC
Q psy11524        196 GWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKN  274 (323)
Q Consensus       196 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~  274 (323)
                      ..+...+.+|-..+..++|+||+++|+++..|. |++-....-..+..+ ..+|..-|..++..++     ..|..++.|
T Consensus       141 ~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf-clGH~eFVS~isl~~~-----~~LlS~sGD  214 (390)
T KOG3914|consen  141 SGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF-CLGHKEFVSTISLTDN-----YLLLSGSGD  214 (390)
T ss_pred             ccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh-ccccHhheeeeeeccC-----ceeeecCCC
Confidence            456667778999999999999999999999999 999887766666664 6789999999999887     456677777


Q ss_pred             CCeEEEecccc
Q psy11524        275 RDLYLSMWSHS  285 (323)
Q Consensus       275 ~~~~~~~~~~~  285 (323)
                      +++++|++..+
T Consensus       215 ~tlr~Wd~~sg  225 (390)
T KOG3914|consen  215 KTLRLWDITSG  225 (390)
T ss_pred             CcEEEEecccC
Confidence            77777777664

>KOG2066|consensus

Probab=98.88  E-value=4.1e-07  Score=79.97  Aligned_cols=164  Identities=15%  Similarity=0.172  Sum_probs=117.8

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCe
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQ  158 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~  158 (323)
                      ....+.|++++  +++++.|..+ |.+++++..+...+...|...      ..+|.++++|+.||+|.   |-.+- ++.
T Consensus        38 ~~D~is~~av~--~~~~~~GtH~-g~v~~~~~~~~~~~~~~~s~~------~~~Gey~asCS~DGkv~---I~sl~~~~~  105 (846)
T KOG2066|consen   38 QNDAISCCAVH--DKFFALGTHR-GAVYLTTCQGNPKTNFDHSSS------ILEGEYVASCSDDGKVV---IGSLFTDDE  105 (846)
T ss_pred             hhhHHHHHHhh--cceeeecccc-ceEEEEecCCccccccccccc------ccCCceEEEecCCCcEE---EeeccCCcc
Confidence            35567777776  6788888776 699999877765555555544      55799999999999999   88874 444


Q ss_pred             eeEeecCCCceeEEEEecC-----CCEEEEEeC-CeEEEEeCC--C-CeeeecCCCCccEEEEEEcCCCCEEEEEecCcE
Q psy11524        159 LYSSLTHDHPISSLAWAPG-----GDMFAVGSY-NTLRLCDKV--G-WSHSLDKPDTGSVYDLVWSNDATQIAGACANVI  229 (323)
Q Consensus       159 ~~~~~~~~~~v~~~~~~p~-----~~~l~~~~~-~~i~i~d~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~i  229 (323)
                      ..++ ....++.+++++|+     .+.+++|+. | +.++..+  + +.........++|.++.|.  |.++|-++.+||
T Consensus       106 ~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv  181 (846)
T KOG2066|consen  106 ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGV  181 (846)
T ss_pred             ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCc
Confidence            3333 35678999999997     556888887 5 7777643  2 2223456678899999996  668888888889


Q ss_pred             EEEEcCCCceeeeecCCCCccc------eEEEEEccCC
Q psy11524        230 HIFDISSSSSSNVTAPLSHSHE------ITQLAVNQTG  261 (323)
Q Consensus       230 ~iwd~~~~~~~~~~~~~~~~~~------v~~~~~~p~g  261 (323)
                      ++||..+++.+..+  ......      ...+.|.++.
T Consensus       182 ~vyd~~~~~~l~~i--~~p~~~~R~e~fpphl~W~~~~  217 (846)
T KOG2066|consen  182 KVYDTPTRQRLTNI--PPPSQSVRPELFPPHLHWQDED  217 (846)
T ss_pred             EEEeccccceeecc--CCCCCCCCcccCCCceEecCCC
Confidence            99999998877763  222222      2356777764

>KOG1912|consensus

Probab=98.87  E-value=6e-07  Score=78.72  Aligned_cols=229  Identities=14%  Similarity=0.120  Sum_probs=146.6

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCC------------CEEEEEcCCCc
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSST------------DLILSGGEDCK  145 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~d~~  145 (323)
                      +...-.++.|+|.| .+|+|+..  .|.+.|...-  ++.++-|...|+.+.|.|-.            -+||++...|.
T Consensus        14 ~~sN~~A~Dw~~~G-LiAygshs--lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr   90 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG-LIAYGSHS--LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR   90 (1062)
T ss_pred             CcccccccccCccc-eEEEecCc--eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence            44457788999987 67777655  5666665443  67788899999999998731            25777888899


Q ss_pred             eEeeeEEeCC-CCeeeEeecCCCceeEEEEec---CCCE-EEEEeC-CeEEEEeCCCCeee-ecCCCCccEEEEEEcC-C
Q psy11524        146 YKASFVWDTD-GRQLYSSLTHDHPISSLAWAP---GGDM-FAVGSY-NTLRLCDKVGWSHS-LDKPDTGSVYDLVWSN-D  217 (323)
Q Consensus       146 i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p---~~~~-l~~~~~-~~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~-~  217 (323)
                      |.   +||.. ......+..+..++..++|-|   +.+. +++-.. .++.+|+..+.... ..........|+.+.| |
T Consensus        91 Ii---l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd  167 (1062)
T KOG1912|consen   91 II---LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFD  167 (1062)
T ss_pred             EE---EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCC
Confidence            99   99985 555666777888999999977   3434 444333 59999997644333 3332344566788998 7


Q ss_pred             CCEEEEEecCc-EEEEEc-CC------CceeeeecCCCCcc-------------------------ceEEEEEccCCCCc
Q psy11524        218 ATQIAGACANV-IHIFDI-SS------SSSSNVTAPLSHSH-------------------------EITQLAVNQTGSLQ  264 (323)
Q Consensus       218 ~~~l~~~~~d~-i~iwd~-~~------~~~~~~~~~~~~~~-------------------------~v~~~~~~p~g~~~  264 (323)
                      .+.+...+..| +.+-+. ..      ++..+.  -..|..                         ....++|+|.-   
T Consensus       168 ~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI--~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~---  242 (1062)
T KOG1912|consen  168 SRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQI--TSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW---  242 (1062)
T ss_pred             cceEEEEccCceEEEEeccCCCCCCCCceeEEE--ecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh---
Confidence            77777666666 555442 11      111111  011111                         01235667765   


Q ss_pred             cceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCC--eeEeeecCCeEEEEEe
Q psy11524        265 ERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDAT--QIAGACANGSLLLGTI  320 (323)
Q Consensus       265 d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~--~l~s~~~dg~i~~~~l  320 (323)
                       +.+.+......+.+++++-.    +.....+.+.-+.|-|+++  .|++...||.+.+|.-
T Consensus       243 -rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvr  303 (1062)
T KOG1912|consen  243 -RNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR  303 (1062)
T ss_pred             -hceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence             44444455556666666542    2222245555677788765  7999999999999864

>KOG1920|consensus

Probab=98.86  E-value=3.6e-06  Score=77.49  Aligned_cols=234  Identities=15%  Similarity=0.259  Sum_probs=143.8

Q ss_pred             ecccceeEeeEeccCCcceeeeeeccc---cccccceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCC----
Q psy11524         41 RRYDGTVINYPISPYISVLHSYAASHS---WPQALSLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPN----  112 (323)
Q Consensus        41 ~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~----  112 (323)
                      +..++.|.++.|-.+...+....+.|.   -|.....+...+ -...|.+++||||++.++.....+ ++.+.+..    
T Consensus        65 ~~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~-tll~mT~~f~~i  143 (1265)
T KOG1920|consen   65 EDGDDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQ-TLLFMTKDFEPI  143 (1265)
T ss_pred             cCCCcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCc-EEEEEeccccch
Confidence            344567888888777765554444442   133332333333 578999999999999999887664 44333210    


Q ss_pred             --C----------c---------eeEeeccC---------------------CCeEEEEECCCCCEEEEEc-----CCCc
Q psy11524        113 --N----------K---------ATKWQAHD---------------------GLILKVAWCSSTDLILSGG-----EDCK  145 (323)
Q Consensus       113 --~----------~---------~~~~~~~~---------------------~~v~~~~~~~~~~~l~~~~-----~d~~  145 (323)
                        .          +         ...+.+..                     ..=..+.|.-||+++|+..     ...+
T Consensus       144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK  223 (1265)
T ss_pred             hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence              0          0         00111110                     1113589999999998843     2267


Q ss_pred             eEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC---C-eEEEEeCCCCeee---ecCC-CCccEEEEEEcCC
Q psy11524        146 YKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY---N-TLRLCDKVGWSHS---LDKP-DTGSVYDLVWSND  217 (323)
Q Consensus       146 i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---~-~i~i~d~~~~~~~---~~~~-~~~~v~~~~~~~~  217 (323)
                      |+   +||.++..-..-....+.-.+++|-|.|..+++-..   + .|.+|..+|....   ...+ ....+..++|+.+
T Consensus       224 ir---V~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~  300 (1265)
T KOG1920|consen  224 IR---VYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN  300 (1265)
T ss_pred             EE---EecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence            88   999884433333334444568999999999887654   3 6999987764322   2222 2334999999999


Q ss_pred             CCEEEE---EecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecc
Q psy11524        218 ATQIAG---ACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWS  283 (323)
Q Consensus       218 ~~~l~~---~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~  283 (323)
                      +..|++   ..... |++|-..+-.......+.-.....  +.|+|..   +.++.++...|...++++.
T Consensus       301 sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~---~~~L~v~~~sG~~~v~~~~  365 (1265)
T KOG1920|consen  301 SDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVT---EKTLHVLRESGQRLVRDFA  365 (1265)
T ss_pred             CCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCC---ceeEEEEecCCcEEEEEEE
Confidence            999988   44555 999998775432221011111111  7888865   3778888777776665543

>KOG0309|consensus

Probab=98.83  E-value=6.4e-08  Score=84.14  Aligned_cols=217  Identities=14%  Similarity=0.209  Sum_probs=140.8

Q ss_pred             cCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEeeccC--CCeEEEEECCCC---CEEEEEcCCCceEeeeEE
Q psy11524         78 LNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHD--GLILKVAWCSST---DLILSGGEDCKYKASFVW  152 (323)
Q Consensus        78 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~--~~v~~~~~~~~~---~~l~~~~~d~~i~~i~v~  152 (323)
                      +....++.++..+|.|+-+|.++..+..+...|.....-.+..|.  -.|....|+|..   ..+++.+....|    +|
T Consensus        21 l~v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkai----iw   96 (1081)
T KOG0309|consen   21 LKVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAI----IW   96 (1081)
T ss_pred             EEecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhh----hh
Confidence            446788999999999999999888764444333332222222332  246678898864   356665555555    89


Q ss_pred             eCC----CCeeeEeecCCCceeEEEEecCCC-EEEEEeCC-eEEEEeCCCCee--eecCCCCccEEEEEEcCCCCEEEEE
Q psy11524        153 DTD----GRQLYSSLTHDHPISSLAWAPGGD-MFAVGSYN-TLRLCDKVGWSH--SLDKPDTGSVYDLVWSNDATQIAGA  224 (323)
Q Consensus       153 d~~----~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~~-~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~  224 (323)
                      ++.    ...-..+.+|...++.+.|+|+.. .+++++-+ .+..||++....  -....-......+.|+.....+++.
T Consensus        97 nlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas  176 (1081)
T KOG0309|consen   97 NLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS  176 (1081)
T ss_pred             hhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh
Confidence            983    223344567889999999999654 56777778 999999986532  2333344567889999744445555


Q ss_pred             ecCc-EEEEEcCCCc-eeeeecCCCCccceEEEEEccCCC------CccceEEEEeCCCCeEEEecccccCCCCccceeE
Q psy11524        225 CANV-IHIFDISSSS-SSNVTAPLSHSHEITQLAVNQTGS------LQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYD  296 (323)
Q Consensus       225 ~~d~-i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~p~g~------~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~  296 (323)
                      +.+. |.+||.+.|. ++..  +.+|...+..++|...-.      +.|+++++|+.+.....|+-..   . -..+|+.
T Consensus       177 shg~~i~vwd~r~gs~pl~s--~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v---t-t~~piw~  250 (1081)
T KOG0309|consen  177 SHGNDIFVWDLRKGSTPLCS--LKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV---T-TNFPIWR  250 (1081)
T ss_pred             ccCCceEEEeccCCCcceEE--ecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec---c-ccCccee
Confidence            5666 9999998765 4444  567777777777754321      4467788887776655444322   1 1455666


Q ss_pred             EEEeeCCC
Q psy11524        297 LVWSSDAT  304 (323)
Q Consensus       297 ~~~s~~g~  304 (323)
                      -.+-|-|+
T Consensus       251 ~r~~Pfg~  258 (1081)
T KOG0309|consen  251 GRYLPFGE  258 (1081)
T ss_pred             ccccccCc
Confidence            66666554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.81  E-value=5.9e-06  Score=66.24  Aligned_cols=196  Identities=15%  Similarity=0.120  Sum_probs=127.0

Q ss_pred             CCeEEEEECC-CCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCce--eEEEEecCCCEEEEEeC------CeEEEE
Q psy11524        123 GLILKVAWCS-STDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPI--SSLAWAPGGDMFAVGSY------NTLRLC  192 (323)
Q Consensus       123 ~~v~~~~~~~-~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v--~~~~~~p~~~~l~~~~~------~~i~i~  192 (323)
                      .+...++.+| ++..++.+-.-|+-.  .+||.. ++....+....+.-  -.-.|||||++|++.-.      +.|-||
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~--~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVy   82 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFA--LVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVY   82 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEE--EEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence            3445678888 456677777666532  278885 44444554433322  14679999999888643      379999


Q ss_pred             eCC-CC-eeeecCCCCccEEEEEEcCCCCEEEEEec------------------Cc-EEEEEcCCCceeeeecC--CCCc
Q psy11524        193 DKV-GW-SHSLDKPDTGSVYDLVWSNDATQIAGACA------------------NV-IHIFDISSSSSSNVTAP--LSHS  249 (323)
Q Consensus       193 d~~-~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~-i~iwd~~~~~~~~~~~~--~~~~  249 (323)
                      |.. +. .+..+..+.-....+.+.|||+.|+++-.                  +- +.+.|..+|+.+.+..+  ..|.
T Consensus        83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~  162 (305)
T PF07433_consen   83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ  162 (305)
T ss_pred             ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc
Confidence            988 33 33355556656778899999988877532                  22 56667889998887555  3477


Q ss_pred             cceEEEEEccCCC------------CccceEEEEeCCCCeEEEeccccc-CCCCccceeEEEEeeCCCeeE-eeecCCeE
Q psy11524        250 HEITQLAVNQTGS------------LQERHVAFIDKNRDLYLSMWSHSL-DKPDTGSVYDLVWSSDATQIA-GACANGSL  315 (323)
Q Consensus       250 ~~v~~~~~~p~g~------------~~d~~l~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~-s~~~dg~i  315 (323)
                      -.++-+++.++|.            ...-.+.++...+........... ... ...+-+|+++++|.+++ |+-.-+.+
T Consensus       163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l-~~Y~gSIa~~~~g~~ia~tsPrGg~~  241 (305)
T PF07433_consen  163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRL-NGYIGSIAADRDGRLIAVTSPRGGRV  241 (305)
T ss_pred             cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhh-CCceEEEEEeCCCCEEEEECCCCCEE
Confidence            7899999999974            111234444444433333332211 122 57899999999998775 55566778


Q ss_pred             EEEEee
Q psy11524        316 LLGTII  321 (323)
Q Consensus       316 ~~~~l~  321 (323)
                      .+|+..
T Consensus       242 ~~~d~~  247 (305)
T PF07433_consen  242 AVWDAA  247 (305)
T ss_pred             EEEECC
Confidence            999754

>KOG1064|consensus

Probab=98.80  E-value=6.9e-08  Score=91.51  Aligned_cols=189  Identities=12%  Similarity=0.115  Sum_probs=141.3

Q ss_pred             eeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEee-cCCCceeEEEEecCCCEEEEEeCC-eEEEEeC
Q psy11524        118 WQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSL-THDHPISSLAWAPGGDMFAVGSYN-TLRLCDK  194 (323)
Q Consensus       118 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~  194 (323)
                      +..+-..|.++.=+|...+.++|+.||.++   +|... +..+..+. .....|+.+.|+.+|+.+..+..| .+.+|..
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~---~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVR---MFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEE---EEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeeccc
Confidence            344456677777788888899999999999   99874 55555443 234789999999999998888775 9999999


Q ss_pred             CCCeeeecCCCCccEEEEEEcCCCCEEEEEe---cCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEE
Q psy11524        195 VGWSHSLDKPDTGSVYDLVWSNDATQIAGAC---ANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAF  270 (323)
Q Consensus       195 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~  270 (323)
                      ..+.....+.|......+.|-.  ..+++++   .++ +.+||..-.....-+ ...|.+.++++++.|.-    ..+..
T Consensus      2281 ~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v-~~~H~~gaT~l~~~P~~----qllis 2353 (2439)
T KOG1064|consen 2281 SPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV-HTCHDGGATVLAYAPKH----QLLIS 2353 (2439)
T ss_pred             CCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee-eeecCCCceEEEEcCcc----eEEEe
Confidence            8766667777888888888875  4556554   244 999995432211111 36789999999999997    89999


Q ss_pred             EeCCCCeEEEecccccCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        271 IDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      +..+|.+++|+++..... |.-..    +. ...++++|+..|.|+||++.+
T Consensus      2354 ggr~G~v~l~D~rqrql~-h~~~~----~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLR-HTFQA----LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred             cCCcCcEEEeehHHHHHH-HHhhh----hh-hhheeeccCcccceEEEEccc
Confidence            999999999999874222 22222    44 566999999999999999753

>KOG4532|consensus

Probab=98.78  E-value=5.3e-06  Score=63.98  Aligned_cols=161  Identities=12%  Similarity=0.067  Sum_probs=106.7

Q ss_pred             EEEeeCCeEEEEeCCCCceeEeeccCC--CeEEEEECCCCCEEEEEcCCCceEeeeEEeCC--CCeeeE--eecCCCcee
Q psy11524         97 LLTQAKSLVIKPLSPNNKATKWQAHDG--LILKVAWCSSTDLILSGGEDCKYKASFVWDTD--GRQLYS--SLTHDHPIS  170 (323)
Q Consensus        97 ~~~~~~~~~v~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~--~~~~~~--~~~~~~~v~  170 (323)
                      ..++.+ ..+++.++.........|..  .+.++++++|++++++.+....|.   .|.++  ++.+..  .......-.
T Consensus       132 ~i~snd-ht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf---~y~id~~sey~~~~~~a~t~D~gF  207 (344)
T KOG4532|consen  132 NIASND-HTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVF---RYAIDDESEYIENIYEAPTSDHGF  207 (344)
T ss_pred             eeccCC-cceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcce---EEEeCCccceeeeeEecccCCCce
Confidence            334444 36666665555333333443  378999999999999999888887   99884  333332  223334456


Q ss_pred             EEEEecCCCEEEEEeCC-eEEEEeCCCCee------eecCCCCccEEEEEEcCCCC--EEEEEecCc-EEEEEcCCCcee
Q psy11524        171 SLAWAPGGDMFAVGSYN-TLRLCDKVGWSH------SLDKPDTGSVYDLVWSNDAT--QIAGACANV-IHIFDISSSSSS  240 (323)
Q Consensus       171 ~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~------~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~-i~iwd~~~~~~~  240 (323)
                      +..|+.....+|++..| ++.|||++....      .....|.+.++.+.|+|.|.  +|+..-.-+ +.+.|+++++..
T Consensus       208 ~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~  287 (344)
T KOG4532|consen  208 YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH  287 (344)
T ss_pred             eeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence            78899989999999996 999999874321      13334788999999998664  344444445 999999998766


Q ss_pred             eeecCCC-----C-ccceEEEEEccCC
Q psy11524        241 NVTAPLS-----H-SHEITQLAVNQTG  261 (323)
Q Consensus       241 ~~~~~~~-----~-~~~v~~~~~~p~g  261 (323)
                      +.+.+..     | ...+....|+.++
T Consensus       288 q~I~i~~d~~~~~~tq~ifgt~f~~~n  314 (344)
T KOG4532|consen  288 QVIVIPDDVERKHNTQHIFGTNFNNEN  314 (344)
T ss_pred             eEEecCccccccccccccccccccCCC
Confidence            6532222     1 1335566666655

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.78  E-value=3.8e-05  Score=61.70  Aligned_cols=221  Identities=13%  Similarity=0.069  Sum_probs=135.0

Q ss_pred             CCEEEEEEcC-CCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCe--EEEEECCCCCEEEEEcC-----CCceEeeeE
Q psy11524         82 PPVYSAAWSP-DSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLI--LKVAWCSSTDLILSGGE-----DCKYKASFV  151 (323)
Q Consensus        82 ~~v~~~~~sp-~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----d~~i~~i~v  151 (323)
                      .....++.+| .+..++++-.-.-...++|..+.  ...+....+.-  -.-.||+||++|++.-.     .|.|-   |
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~Ig---V   81 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIG---V   81 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEE---E
Confidence            4456788889 44555555544445677777655  33343333322  24689999999998744     47888   9


Q ss_pred             EeCC--CCeeeEeecCCCceeEEEEecCCCEEEEEeC------------------C-eEEEEeCC-CCeeee--c--CCC
Q psy11524        152 WDTD--GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY------------------N-TLRLCDKV-GWSHSL--D--KPD  205 (323)
Q Consensus       152 ~d~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~------------------~-~i~i~d~~-~~~~~~--~--~~~  205 (323)
                      ||..  -+.+..+..+.-....+.+.|||+.|+++..                  + .+.+.|.. +..+..  +  .-|
T Consensus        82 yd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~  161 (305)
T PF07433_consen   82 YDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH  161 (305)
T ss_pred             EECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc
Confidence            9997  4566677777777888999999988777642                  1 34455544 332222  3  226


Q ss_pred             CccEEEEEEcCCCCEEEEEecC-----c---EEEEEcCCCceeeeecC-----CCCccceEEEEEccCCCCccceEEEEe
Q psy11524        206 TGSVYDLVWSNDATQIAGACAN-----V---IHIFDISSSSSSNVTAP-----LSHSHEITQLAVNQTGSLQERHVAFID  272 (323)
Q Consensus       206 ~~~v~~~~~~~~~~~l~~~~~d-----~---i~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~p~g~~~d~~l~~~~  272 (323)
                      .-.++.+++.++|..++..-..     .   +.+++.  ++.+..+..     ......+-++++++++    +.+++-+
T Consensus       162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g----~~ia~ts  235 (305)
T PF07433_consen  162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDG----RLIAVTS  235 (305)
T ss_pred             ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCC----CEEEEEC
Confidence            6789999999999765544321     1   444443  332222111     1234678899999998    6776665


Q ss_pred             CCC-CeEEEecccc--cCCCCccceeEEEEeeCCCeeEeeecC
Q psy11524        273 KNR-DLYLSMWSHS--LDKPDTGSVYDLVWSSDATQIAGACAN  312 (323)
Q Consensus       273 ~~~-~~~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~s~~~d  312 (323)
                      ..+ .+.+|+..++  +....-..+..++-.+++ ++++.+.-
T Consensus       236 PrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ssG~G  277 (305)
T PF07433_consen  236 PRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVSSGQG  277 (305)
T ss_pred             CCCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEeCCCc
Confidence            554 4667877664  111123445666666666 56655543

>KOG2695|consensus

Probab=98.76  E-value=4.5e-08  Score=77.60  Aligned_cols=151  Identities=11%  Similarity=0.076  Sum_probs=107.5

Q ss_pred             EEEEeCCCCceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC-----CeeeEeecCCCceeEEEEec-CC
Q psy11524        105 VIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG-----RQLYSSLTHDHPISSLAWAP-GG  178 (323)
Q Consensus       105 ~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~-----~~~~~~~~~~~~v~~~~~~p-~~  178 (323)
                      .+-+.+..++.......++.|.++.|...++++..|..+|.|.   .+|++.     ........|+..|+++..-. ++
T Consensus       235 qv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~---~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~  311 (425)
T KOG2695|consen  235 QVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIF---VIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQ  311 (425)
T ss_pred             eeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEE---EEEeeecccCCCcceEEEEcCcchhhhhhhcccc
Confidence            5666777777555444778899999998899999999999999   999942     23344445888899987665 56


Q ss_pred             CEEEEEeC-CeEEEEeCC-CCe---eeecCCCCccEE--EEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCC--
Q psy11524        179 DMFAVGSY-NTLRLCDKV-GWS---HSLDKPDTGSVY--DLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSH--  248 (323)
Q Consensus       179 ~~l~~~~~-~~i~i~d~~-~~~---~~~~~~~~~~v~--~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~--  248 (323)
                      ++|.+.+. ++|++||++ .++   +....+|...-.  -+-..+....++++++|. .+||.+++|..+.++.+...  
T Consensus       312 q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~  391 (425)
T KOG2695|consen  312 QKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSAS  391 (425)
T ss_pred             ceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccc
Confidence            67766666 599999987 333   566666654322  334456666888899999 99999999999988433322  


Q ss_pred             ccceEEEEEc
Q psy11524        249 SHEITQLAVN  258 (323)
Q Consensus       249 ~~~v~~~~~~  258 (323)
                      ...+.+++|.
T Consensus       392 e~d~~sv~~~  401 (425)
T KOG2695|consen  392 EVDIPSVAFD  401 (425)
T ss_pred             cccccceehh
Confidence            2234555554

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.73  E-value=3.5e-06  Score=73.76  Aligned_cols=180  Identities=11%  Similarity=0.071  Sum_probs=111.6

Q ss_pred             EeeEeccCCcceeeeeeccc----cc-cccceeeecCCCCCEEEEEEcCCCCeEEEEee---CCeEEEEeCCCCc--eeE
Q psy11524         48 INYPISPYISVLHSYAASHS----WP-QALSLCRTLNVSPPVYSAAWSPDSNKVLLTQA---KSLVIKPLSPNNK--ATK  117 (323)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---~~~~v~~~~~~~~--~~~  117 (323)
                      ..++++|||+.+........    .| .+.++...+.-......+.++|+|+++++++.   ....+...+....  ...
T Consensus       196 ~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vv  275 (635)
T PRK02888        196 FRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVV  275 (635)
T ss_pred             cccccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEE
Confidence            34688888865432211100    12 33344344444556678899999999988863   2233444433222  111


Q ss_pred             eeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC-----CeeeEeecCCCceeEEEEecCCCEEEEEeC-C-eEE
Q psy11524        118 WQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG-----RQLYSSLTHDHPISSLAWAPGGDMFAVGSY-N-TLR  190 (323)
Q Consensus       118 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~-----~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~  190 (323)
                      +.  ...+  -++.++|++...+  +++|.   +.|...     ..+.....-......++++|||+++++++. . ++.
T Consensus       276 fn--i~~i--ea~vkdGK~~~V~--gn~V~---VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVS  346 (635)
T PRK02888        276 FN--IARI--EEAVKAGKFKTIG--GSKVP---VVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVT  346 (635)
T ss_pred             Ec--hHHH--HHhhhCCCEEEEC--CCEEE---EEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEE
Confidence            10  0001  1334577766652  56788   999865     445555556677889999999999999888 4 999


Q ss_pred             EEeCCCCee------------eecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCC
Q psy11524        191 LCDKVGWSH------------SLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISS  236 (323)
Q Consensus       191 i~d~~~~~~------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~  236 (323)
                      ++|+.....            .-...........+|+++|+...+..-|. |..||+..
T Consensus       347 VIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        347 VIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            999875321            11111233456788999998888888899 99999875

>KOG1920|consensus

Probab=98.72  E-value=4.5e-06  Score=76.91  Aligned_cols=191  Identities=18%  Similarity=0.169  Sum_probs=127.4

Q ss_pred             cCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCC----
Q psy11524        121 HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKV----  195 (323)
Q Consensus       121 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~----  195 (323)
                      ....|.++.|..++..++.+...|.|.   +-|.+.........-...|.+++|+||++.++..+.+ ++.+.+-.    
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~ii---lvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i  143 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDII---LVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI  143 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEE---EEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch
Confidence            346899999999999999999999999   8898877777777778899999999999998888874 66554320    


Q ss_pred             -CCee-------------------eecCC---------------------CCccEEEEEEcCCCCEEEEEe----cC-c-
Q psy11524        196 -GWSH-------------------SLDKP---------------------DTGSVYDLVWSNDATQIAGAC----AN-V-  228 (323)
Q Consensus       196 -~~~~-------------------~~~~~---------------------~~~~v~~~~~~~~~~~l~~~~----~d-~-  228 (323)
                       .+.+                   ..+.+                     ..+.-.+++|--||+++++..    .+ . 
T Consensus       144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK  223 (1265)
T ss_pred             hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence             0000                   01110                     011223589999999998843    23 5 


Q ss_pred             EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeC---CCCeEEEecccc-------cCCCCccceeEEE
Q psy11524        229 IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDK---NRDLYLSMWSHS-------LDKPDTGSVYDLV  298 (323)
Q Consensus       229 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~---~~~~~~~~~~~~-------~~~~~~~~v~~~~  298 (323)
                      |++||.+ |..-..  -....+.-.+++|-|.|    ..++....   ++.+.++.-++.       -.+.....+..++
T Consensus       224 irV~drE-g~Lns~--se~~~~l~~~LsWkPsg----s~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~  296 (1265)
T KOG1920|consen  224 IRVYDRE-GALNST--SEPVEGLQHSLSWKPSG----SLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELA  296 (1265)
T ss_pred             EEEeccc-chhhcc--cCcccccccceeecCCC----CeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheee
Confidence            9999966 543332  22333445678899987    44444321   223444443332       1122234499999


Q ss_pred             EeeCCCeeEe---eecCCeEEEEEee
Q psy11524        299 WSSDATQIAG---ACANGSLLLGTII  321 (323)
Q Consensus       299 ~s~~g~~l~s---~~~dg~i~~~~l~  321 (323)
                      |+.++..|++   ......|++|.+-
T Consensus       297 Wns~sdiLAv~~~~~e~~~v~lwt~~  322 (1265)
T KOG1920|consen  297 WNSNSDILAVVTSNLENSLVQLWTTG  322 (1265)
T ss_pred             ecCCCCceeeeecccccceEEEEEec
Confidence            9999999997   6666669999763

>KOG4190|consensus

Probab=98.69  E-value=5.9e-08  Score=81.77  Aligned_cols=144  Identities=17%  Similarity=0.254  Sum_probs=102.0

Q ss_pred             eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC--------CCeeeEeecCCCceeEEEEecCCCEEEEEeC
Q psy11524        115 ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD--------GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY  186 (323)
Q Consensus       115 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~--------~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  186 (323)
                      +..+.+|...|..++-..+.+.+++++.|++|+   +|.++        ..+..+++.|+.+|.++.|-.+.++++++. 
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVK---LWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD-  803 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVK---LWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCD-  803 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEE---EEEeccccCccccceeeeEhhhccCcccceeeeeccceeeecc-
Confidence            456788999998888777788999999999999   99983        124567788999999999999888877653 


Q ss_pred             CeEEEEeC-CCCeeeecC--CCCccEEEEEEcC--CCCEEEEE-ecCc-EEEEEcCCCceeeeecCC---CCccceEEEE
Q psy11524        187 NTLRLCDK-VGWSHSLDK--PDTGSVYDLVWSN--DATQIAGA-CANV-IHIFDISSSSSSNVTAPL---SHSHEITQLA  256 (323)
Q Consensus       187 ~~i~i~d~-~~~~~~~~~--~~~~~v~~~~~~~--~~~~l~~~-~~d~-i~iwd~~~~~~~~~~~~~---~~~~~v~~~~  256 (323)
                      +.|++||. .+..+..+.  +..+.+..+..-|  +...++.+ +... ++++|.+.++...+++..   +.+..+++++
T Consensus       804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia  883 (1034)
T KOG4190|consen  804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA  883 (1034)
T ss_pred             CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence            47999994 454443221  1223333333333  34445554 5566 999999998866654333   3456789999


Q ss_pred             EccCCC
Q psy11524        257 VNQTGS  262 (323)
Q Consensus       257 ~~p~g~  262 (323)
                      ..|.|+
T Consensus       884 Va~~GN  889 (1034)
T KOG4190|consen  884 VADKGN  889 (1034)
T ss_pred             eccCcc
Confidence            999984

>KOG3621|consensus

Probab=98.66  E-value=3.6e-06  Score=73.22  Aligned_cols=112  Identities=13%  Similarity=0.167  Sum_probs=83.9

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeec--cCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQA--HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG  156 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~  156 (323)
                      +...|.--+++..+++++.|++. |.+++|+..++ .+.++.  ..+.+..+..+++..++|+|+..|.|.   ++.+..
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~-G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~---v~ql~~  107 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSA-GSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVS---VFQLNK  107 (726)
T ss_pred             CcceEEEEEeecCCceEEEeccc-ceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEE---eehhhc
Confidence            56677777888899999998776 79999998776 333333  455666778899999999999999998   888742


Q ss_pred             C----eeeE--e-ecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCC
Q psy11524        157 R----QLYS--S-LTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKV  195 (323)
Q Consensus       157 ~----~~~~--~-~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~  195 (323)
                      .    ....  . ..|+..|++++|++|+..+++|.. |+|.+-.+.
T Consensus       108 ~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~  154 (726)
T KOG3621|consen  108 ELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD  154 (726)
T ss_pred             cCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence            1    1111  1 226778999999999999999988 676665543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.62  E-value=7.2e-05  Score=63.36  Aligned_cols=218  Identities=17%  Similarity=0.228  Sum_probs=119.4

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeecc------------------CCCeEEEEECCCCCEEEEEc
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQAH------------------DGLILKVAWCSSTDLILSGG  141 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~------------------~~~v~~~~~~~~~~~l~~~~  141 (323)
                      ...+....|||+|+.+++..+.  .|++.+.... ...++..                  -+.-..+-|||||++||...
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~~~--nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~  119 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVRDN--NLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR  119 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEETT--EEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred             ccccccceeecCCCeeEEEecC--ceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence            5788999999999999998544  6888876544 2222211                  11235688999999988754


Q ss_pred             CC-CceE--------------------------------eeeEEeCCCCeeeEe------ecCCCceeEEEEecCCCEEE
Q psy11524        142 ED-CKYK--------------------------------ASFVWDTDGRQLYSS------LTHDHPISSLAWAPGGDMFA  182 (323)
Q Consensus       142 ~d-~~i~--------------------------------~i~v~d~~~~~~~~~------~~~~~~v~~~~~~p~~~~l~  182 (323)
                      .| ..|.                                .++++|+.+.....+      ......+..+.|.++++.|+
T Consensus       120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~  199 (353)
T PF00930_consen  120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW  199 (353)
T ss_dssp             EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred             ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence            32 1111                                356677754433222      12345688999999988433


Q ss_pred             E--EeC--C--eEEEEeCCCC-ee-eecCCCCccE---EEEEEc-CCCC-EEEEEecCc---EEEEEcCCCceeeeecCC
Q psy11524        183 V--GSY--N--TLRLCDKVGW-SH-SLDKPDTGSV---YDLVWS-NDAT-QIAGACANV---IHIFDISSSSSSNVTAPL  246 (323)
Q Consensus       183 ~--~~~--~--~i~i~d~~~~-~~-~~~~~~~~~v---~~~~~~-~~~~-~l~~~~~d~---i~iwd~~~~~~~~~~~~~  246 (323)
                      .  ...  +  .+.++|..+. .. .........+   ....+. +++. +|.....+|   |.+++...+....   +.
T Consensus       200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~---lT  276 (353)
T PF00930_consen  200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQ---LT  276 (353)
T ss_dssp             EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEE---SS
T ss_pred             EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceec---cc
Confidence            3  333  2  4667776533 21 1111122222   355554 6555 444555667   7777877666443   45


Q ss_pred             CCccceEE-EEEccCCCCccceEEE-EeCC--CC--eEEEecc-cc---cCCCCccce-eEEEEeeCCCeeEe
Q psy11524        247 SHSHEITQ-LAVNQTGSLQERHVAF-IDKN--RD--LYLSMWS-HS---LDKPDTGSV-YDLVWSSDATQIAG  308 (323)
Q Consensus       247 ~~~~~v~~-~~~~p~g~~~d~~l~~-~~~~--~~--~~~~~~~-~~---~~~~~~~~v-~~~~~s~~g~~l~s  308 (323)
                      ...-.|.. +.+++++    +.|.. ...+  ..  ++..++. ..   .... .... ..+.|||+|++++-
T Consensus       277 ~G~~~V~~i~~~d~~~----~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~-~~~~~~~~~~Spdg~y~v~  344 (353)
T PF00930_consen  277 SGDWEVTSILGWDEDN----NRIYFTANGDNPGERHLYRVSLDSGGEPKCLTC-EDGDHYSASFSPDGKYYVD  344 (353)
T ss_dssp             -SSS-EEEEEEEECTS----SEEEEEESSGGTTSBEEEEEETTETTEEEESST-TSSTTEEEEE-TTSSEEEE
T ss_pred             cCceeecccceEcCCC----CEEEEEecCCCCCceEEEEEEeCCCCCeEeccC-CCCCceEEEECCCCCEEEE
Confidence            55666744 6788887    44443 3321  22  3333333 21   1111 1122 69999999998873

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1832|consensus

Probab=98.61  E-value=8.6e-08  Score=85.11  Aligned_cols=211  Identities=12%  Similarity=0.049  Sum_probs=141.5

Q ss_pred             eeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCC--ceEe
Q psy11524         74 LCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDC--KYKA  148 (323)
Q Consensus        74 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~  148 (323)
                      -|+.+. |....+|++|+-+.++|++|... |.|++++...+  ......|..+|+.+.=+.||..+++.+.-.  -.. 
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~-Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa- 1170 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHA-GEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA- 1170 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeecc-ceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH-
Confidence            355553 78899999999999999998777 69999988766  567789999999999888998777665433  355 


Q ss_pred             eeEEeCC--CCeeeEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCC-eeee-cCC---CCccEEEEEEcCCCCE
Q psy11524        149 SFVWDTD--GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGW-SHSL-DKP---DTGSVYDLVWSNDATQ  220 (323)
Q Consensus       149 i~v~d~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~-~~~~-~~~---~~~~v~~~~~~~~~~~  220 (323)
                        +|++.  +...+.+..    -.++.|+.....-+.|+. +...+||+.+. .+.. +.+   ....-.++.|+|+.++
T Consensus      1171 --LW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1171 --LWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred             --HhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence              89984  455555543    456788876555555555 58999998753 2222 222   2223478899998876


Q ss_pred             EEEEecCcEEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc--cCCCCccceeEEE
Q psy11524        221 IAGACANVIHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS--LDKPDTGSVYDLV  298 (323)
Q Consensus       221 l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~  298 (323)
                      ++-   || .+||++..+.+..  +..... -..-.|+|.|    ..|.+-     ..+|++.+.  +...+.-.-..+.
T Consensus      1245 Iln---dG-vLWDvR~~~aIh~--FD~ft~-~~~G~FHP~g----~eVIIN-----SEIwD~RTF~lLh~VP~Ldqc~Vt 1308 (1516)
T KOG1832|consen 1245 ILN---DG-VLWDVRIPEAIHR--FDQFTD-YGGGGFHPSG----NEVIIN-----SEIWDMRTFKLLHSVPSLDQCAVT 1308 (1516)
T ss_pred             Eee---Cc-eeeeeccHHHHhh--hhhhee-cccccccCCC----ceEEee-----chhhhhHHHHHHhcCccccceEEE
Confidence            653   33 5899998877765  343332 2234689998    555552     346777763  1112233346778


Q ss_pred             EeeCCCeeEe
Q psy11524        299 WSSDATQIAG  308 (323)
Q Consensus       299 ~s~~g~~l~s  308 (323)
                      |+..|..++.
T Consensus      1309 FNstG~VmYa 1318 (1516)
T KOG1832|consen 1309 FNSTGDVMYA 1318 (1516)
T ss_pred             eccCccchhh
Confidence            8888876654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.60  E-value=1.5e-06  Score=68.33  Aligned_cols=193  Identities=12%  Similarity=0.168  Sum_probs=121.4

Q ss_pred             cCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC------CeeeEeecCC------------CceeEEEEecCCC--E
Q psy11524        121 HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG------RQLYSSLTHD------------HPISSLAWAPGGD--M  180 (323)
Q Consensus       121 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~------~~~~~~~~~~------------~~v~~~~~~p~~~--~  180 (323)
                      ....|+++.|...|.+|++|...|+|.   ++.-+.      +-...++.|.            ..|..+.|-.++.  .
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVv---lfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h  101 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVV---LFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH  101 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEE---EeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence            345789999999999999999999999   887631      1112233332            3467788776432  3


Q ss_pred             EEEEeCC-eEEEEeCCCCee-------------------------------------------e-ecCCCCccEEEEEEc
Q psy11524        181 FAVGSYN-TLRLCDKVGWSH-------------------------------------------S-LDKPDTGSVYDLVWS  215 (323)
Q Consensus       181 l~~~~~~-~i~i~d~~~~~~-------------------------------------------~-~~~~~~~~v~~~~~~  215 (323)
                      ++..+.+ +|++|.+..+.+                                           + ....|...+.++.++
T Consensus       102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N  181 (460)
T COG5170         102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN  181 (460)
T ss_pred             EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence            5555555 999998643211                                           0 012355567889999


Q ss_pred             CCCCEEEEEecCcEEEEEcCCCceee-eecCCCCc-----cceEEEEEccCCCCccceEEEE-eCCCCeEEEecccc---
Q psy11524        216 NDATQIAGACANVIHIFDISSSSSSN-VTAPLSHS-----HEITQLAVNQTGSLQERHVAFI-DKNRDLYLSMWSHS---  285 (323)
Q Consensus       216 ~~~~~l~~~~~d~i~iwd~~~~~~~~-~~~~~~~~-----~~v~~~~~~p~g~~~d~~l~~~-~~~~~~~~~~~~~~---  285 (323)
                      .|.+.++++..=.|.+|++..-..-. ..-+.+|.     ..|++..|+|..    ..+..+ +..|.+.+-+++..   
T Consensus       182 sD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~----cn~fmYSsSkG~Ikl~DlRq~alc  257 (460)
T COG5170         182 SDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEM----CNVFMYSSSKGEIKLNDLRQSALC  257 (460)
T ss_pred             CchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhH----cceEEEecCCCcEEehhhhhhhhc
Confidence            88887766532229999876322111 10023332     357888999976    444444 45566777666532   


Q ss_pred             -----------------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        286 -----------------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       286 -----------------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                                       .+..-...|..+.|+++|+++++-+ =-++++|++.
T Consensus       258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvn  309 (460)
T COG5170         258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVN  309 (460)
T ss_pred             cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecc
Confidence                             0001135688999999999888765 3578999873

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.60  E-value=2e-07  Score=51.06  Aligned_cols=36  Identities=28%  Similarity=0.680  Sum_probs=34.0

Q ss_pred             eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEe
Q psy11524        115 ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWD  153 (323)
Q Consensus       115 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d  153 (323)
                      ...+.+|.+.|.+++|+|++.+|++++.|+.|+   +||
T Consensus         4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~---vwd   39 (39)
T PF00400_consen    4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIR---VWD   39 (39)
T ss_dssp             EEEEESSSSSEEEEEEETTSSEEEEEETTSEEE---EEE
T ss_pred             EEEEcCCCCcEEEEEEecccccceeeCCCCEEE---EEC
Confidence            567889999999999999999999999999999   997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0882|consensus

Probab=98.59  E-value=7.9e-07  Score=73.18  Aligned_cols=192  Identities=16%  Similarity=0.078  Sum_probs=129.1

Q ss_pred             cCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC----CeeeEeecCCCceeEEEEecCCCEEEEEeC-C-eEEEEeC
Q psy11524        121 HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG----RQLYSSLTHDHPISSLAWAPGGDMFAVGSY-N-TLRLCDK  194 (323)
Q Consensus       121 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~----~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~  194 (323)
                      |...|+.+.-. -.+++.+++.||.++   .|-...    +-+..+..|...+.+++.+-++.++.+.+. | .++++|+
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~K---FWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKK---FWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhh---hcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence            66667666543 357899999999999   998754    233445667888999999999999999888 8 9999997


Q ss_pred             CCCeeeecCCCCccEEEEEEcC-CC---CEEEEEec-Cc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceE
Q psy11524        195 VGWSHSLDKPDTGSVYDLVWSN-DA---TQIAGACA-NV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHV  268 (323)
Q Consensus       195 ~~~~~~~~~~~~~~v~~~~~~~-~~---~~l~~~~~-d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l  268 (323)
                      .+...............+.|.. .|   ..|+++.. ++ +.++|-....+...+.-.-|..+|..+.++|.+    ..+
T Consensus        84 En~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~----Ds~  159 (558)
T KOG0882|consen   84 ENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG----DSA  159 (558)
T ss_pred             eccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc----cce
Confidence            6532221111112222233322 22   13444443 55 999997654422221134588899999999988    556


Q ss_pred             EEEeCCCCeEEEecccc--------------------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        269 AFIDKNRDLYLSMWSHS--------------------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       269 ~~~~~~~~~~~~~~~~~--------------------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      .+.+..|.+.-|.....                    +.+. .....++.|+|+|..+.+-+.|..|+++.+.
T Consensus       160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~-Kt~pts~Efsp~g~qistl~~DrkVR~F~~K  231 (558)
T KOG0882|consen  160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKA-KTEPTSFEFSPDGAQISTLNPDRKVRGFVFK  231 (558)
T ss_pred             eeccccceeEeecCCCcccCccccccccccccchhhccccc-ccCccceEEccccCcccccCcccEEEEEEec
Confidence            66666666666665521                    2222 4667899999999999999999999998764

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.58  E-value=2.6e-07  Score=50.54  Aligned_cols=37  Identities=35%  Similarity=0.686  Sum_probs=34.1

Q ss_pred             CeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEe
Q psy11524        157 RQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCD  193 (323)
Q Consensus       157 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d  193 (323)
                      +++..+.+|...|.+++|+|++.+|++++.| .|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4677889999999999999999999999997 999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.58  E-value=5.9e-06  Score=70.75  Aligned_cols=119  Identities=17%  Similarity=0.199  Sum_probs=81.1

Q ss_pred             ceeeecCCCCCEEEEEEcCCCC-eEEEEee----CC---eEEEEeCCCCc-ee----EeeccCCCeEEEEECCCCCEEEE
Q psy11524         73 SLCRTLNVSPPVYSAAWSPDSN-KVLLTQA----KS---LVIKPLSPNNK-AT----KWQAHDGLILKVAWCSSTDLILS  139 (323)
Q Consensus        73 ~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~----~~---~~v~~~~~~~~-~~----~~~~~~~~v~~~~~~~~~~~l~~  139 (323)
                      ++......+....++.||-... .+.+...    ++   ..-.+|+.... ++    +--..+..+.+++++|+.+.++.
T Consensus       197 EvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvl  276 (545)
T PF11768_consen  197 EVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVL  276 (545)
T ss_pred             EEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEE
Confidence            3344444556667888887443 3333321    11   11233443322 21    12356788999999999999999


Q ss_pred             EcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCC
Q psy11524        140 GGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKV  195 (323)
Q Consensus       140 ~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~  195 (323)
                      |+.||.|.   +||...+..... ...-.++.++|+|+|..+++|+. |.+.+||+.
T Consensus       277 GC~DgSii---LyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  277 GCEDGSII---LYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             EecCCeEE---EEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            99999999   999975543333 34566889999999999999999 799999975

>KOG3617|consensus

Probab=98.58  E-value=2.5e-06  Score=75.76  Aligned_cols=111  Identities=14%  Similarity=0.192  Sum_probs=83.2

Q ss_pred             CCEEEEEEcCCCCeEEEEe---eCCeEEEEeCCCCceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCe
Q psy11524         82 PPVYSAAWSPDSNKVLLTQ---AKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQ  158 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~---~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~  158 (323)
                      ..-+-.+|+|....+++++   ...|.|-++-..+....--..+-.+.+++|+|..-.|+.|-.-|.+.   +|....+.
T Consensus        16 avsti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~---v~~~~~~e   92 (1416)
T KOG3617|consen   16 AVSTISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSD---VQKTNTTE   92 (1416)
T ss_pred             ccccccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeE---EEecCCce
Confidence            3344567999999988876   34478888765544222112233456799999888889999999999   99987555


Q ss_pred             eeE-eecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCC
Q psy11524        159 LYS-SLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKV  195 (323)
Q Consensus       159 ~~~-~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~  195 (323)
                      ..+ ...|+.++..+.|||+|..++++.. +.+.+|...
T Consensus        93 ~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   93 THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            544 4669999999999999999999998 788888754

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.55  E-value=0.00011  Score=62.23  Aligned_cols=222  Identities=16%  Similarity=0.152  Sum_probs=125.1

Q ss_pred             cCCCCeEEEEeeC--------CeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeee
Q psy11524         90 SPDSNKVLLTQAK--------SLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLY  160 (323)
Q Consensus        90 sp~~~~l~~~~~~--------~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~  160 (323)
                      |||+++++.....        .+.++++|..++ ...+......+....|+|+|+.++... ++.|.   +++..+....
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly---~~~~~~~~~~   76 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLY---LRDLATGQET   76 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEE---EESSTTSEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceE---EEECCCCCeE
Confidence            6899988875421        256888998876 444444467788999999999998876 56677   9988554444


Q ss_pred             EeecCC------------------CceeEEEEecCCCEEEEEeCC-----------------------------------
Q psy11524        161 SSLTHD------------------HPISSLAWAPGGDMFAVGSYN-----------------------------------  187 (323)
Q Consensus       161 ~~~~~~------------------~~v~~~~~~p~~~~l~~~~~~-----------------------------------  187 (323)
                      .++...                  ..-..+.|||||++|+....|                                   
T Consensus        77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np  156 (353)
T PF00930_consen   77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNP  156 (353)
T ss_dssp             ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---
T ss_pred             EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCC
Confidence            443211                  123568899999999876421                                   


Q ss_pred             --eEEEEeCCCCeeee---c---CCCCccEEEEEEcCCCCEEEEE--ecCc----EEEEEcCCCceeeeecCCCCccc--
Q psy11524        188 --TLRLCDKVGWSHSL---D---KPDTGSVYDLVWSNDATQIAGA--CANV----IHIFDISSSSSSNVTAPLSHSHE--  251 (323)
Q Consensus       188 --~i~i~d~~~~~~~~---~---~~~~~~v~~~~~~~~~~~l~~~--~~d~----i~iwd~~~~~~~~~~~~~~~~~~--  251 (323)
                        .+.++|+.+.....   .   ......+..+.|.++++.|+..  ..+.    +.++|..+++..... .......  
T Consensus       157 ~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~-~e~~~~Wv~  235 (353)
T PF00930_consen  157 RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVL-EETSDGWVD  235 (353)
T ss_dssp             EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEE-EEESSSSSS
T ss_pred             ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEE-EecCCccee
Confidence              23334444332211   1   1223457889999999844332  3322    677788776543321 1111222  


Q ss_pred             -eEEEEEc-cCCCCccceEEEEeCCCCeEEEecccc------cCCCCcccee-EEEEeeCCCeeE-eeecC--CeEEEEE
Q psy11524        252 -ITQLAVN-QTGSLQERHVAFIDKNRDLYLSMWSHS------LDKPDTGSVY-DLVWSSDATQIA-GACAN--GSLLLGT  319 (323)
Q Consensus       252 -v~~~~~~-p~g~~~d~~l~~~~~~~~~~~~~~~~~------~~~~~~~~v~-~~~~s~~g~~l~-s~~~d--g~i~~~~  319 (323)
                       -..+.|. +++   +..+.+...+|...++.+...      +..+ .-.|. -+.|+++++.|+ ++..+  +.-.+|.
T Consensus       236 ~~~~~~~~~~~~---~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G-~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~  311 (353)
T PF00930_consen  236 VYDPPHFLGPDG---NEFLWISERDGYRHLYLYDLDGGKPRQLTSG-DWEVTSILGWDEDNNRIYFTANGDNPGERHLYR  311 (353)
T ss_dssp             SSSEEEE-TTTS---SEEEEEEETTSSEEEEEEETTSSEEEESS-S-SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEE
T ss_pred             eecccccccCCC---CEEEEEEEcCCCcEEEEEcccccceeccccC-ceeecccceEcCCCCEEEEEecCCCCCceEEEE
Confidence             2345554 665   266666666666655554432      2222 44553 477888877555 44432  3445554


Q ss_pred             e
Q psy11524        320 I  320 (323)
Q Consensus       320 l  320 (323)
                      +
T Consensus       312 v  312 (353)
T PF00930_consen  312 V  312 (353)
T ss_dssp             E
T ss_pred             E
Confidence            4

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.52  E-value=0.00015  Score=57.41  Aligned_cols=190  Identities=14%  Similarity=0.153  Sum_probs=108.5

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeecc-CCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC--
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQAH-DGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD--  155 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~--  155 (323)
                      -...+..++|+|+.+.|++..+..+.|..++..++ ++.+.-. .+....+++..++.++++.-.++.+.   ++++.  
T Consensus        20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~---~~~~~~~   96 (248)
T PF06977_consen   20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLY---IFTIDDD   96 (248)
T ss_dssp             --S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEE---EEEE---
T ss_pred             ccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEE---EEEEecc
Confidence            34569999999998888877777788988888766 3333222 35678899988887777766788888   87772  


Q ss_pred             CCe-----eeEee-----cCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCC----Ceee--e------cCCCCccEEEE
Q psy11524        156 GRQ-----LYSSL-----THDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVG----WSHS--L------DKPDTGSVYDL  212 (323)
Q Consensus       156 ~~~-----~~~~~-----~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~----~~~~--~------~~~~~~~v~~~  212 (323)
                      ++.     ...+.     .....+-.++|+|.++.|+++.+ +...+|.+..    ....  .      .......+.++
T Consensus        97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l  176 (248)
T PF06977_consen   97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGL  176 (248)
T ss_dssp             -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EE
T ss_pred             ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccce
Confidence            111     11221     23456889999998777777766 4555555432    1111  0      11123457899


Q ss_pred             EEcCCCC-EEEEEecCc-EEEEEcCCCceeeeecCCCCc-------cceEEEEEccCCCCccceEEEEeCCCCeE
Q psy11524        213 VWSNDAT-QIAGACANV-IHIFDISSSSSSNVTAPLSHS-------HEITQLAVNQTGSLQERHVAFIDKNRDLY  278 (323)
Q Consensus       213 ~~~~~~~-~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~-------~~v~~~~~~p~g~~~d~~l~~~~~~~~~~  278 (323)
                      +++|... +++...... |..+| .+|+++..+.+....       .....++|.++|     .|.+.+..+..+
T Consensus       177 ~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G-----~LYIvsEpNlfy  245 (248)
T PF06977_consen  177 SYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG-----NLYIVSEPNLFY  245 (248)
T ss_dssp             EEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-------EEEEETTTEEE
T ss_pred             EEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC-----CEEEEcCCceEE
Confidence            9999654 444555555 99999 778877764444421       246789999985     677776655433

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1912|consensus

Probab=98.52  E-value=1.6e-05  Score=70.08  Aligned_cols=228  Identities=14%  Similarity=0.167  Sum_probs=146.2

Q ss_pred             eEeeEeccCCcceeeeeeccc-----cccccceeeecC-CCCCEEEEEEcCCC-----------CeEEEEeeCCeEEEEe
Q psy11524         47 VINYPISPYISVLHSYAASHS-----WPQALSLCRTLN-VSPPVYSAAWSPDS-----------NKVLLTQAKSLVIKPL  109 (323)
Q Consensus        47 v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~v~~~~~sp~~-----------~~l~~~~~~~~~v~~~  109 (323)
                      -.++.++|.|-   ...++++     -..+.++.+.++ |...|+.+.|.|..           ..+++.++-.|.|.+|
T Consensus        18 ~~A~Dw~~~GL---iAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~   94 (1062)
T KOG1912|consen   18 RNAADWSPSGL---IAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV   94 (1062)
T ss_pred             ccccccCccce---EEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence            45677888772   2222232     125566666676 78999999998732           2344444556899999


Q ss_pred             CCCCc--eeEeeccCCCeEEEEECC---CC-CEEEEEcCCCceEeeeEEeC-CCCeeeEeecCCCceeEEEEec-CCCEE
Q psy11524        110 SPNNK--ATKWQAHDGLILKVAWCS---ST-DLILSGGEDCKYKASFVWDT-DGRQLYSSLTHDHPISSLAWAP-GGDMF  181 (323)
Q Consensus       110 ~~~~~--~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~i~~i~v~d~-~~~~~~~~~~~~~~v~~~~~~p-~~~~l  181 (323)
                      |....  ...+..|..++..++|-+   +. ..|++-.....+.   +|+. +|+...+.........++.+.| |.+.+
T Consensus        95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lv---LwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~  171 (1062)
T KOG1912|consen   95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLV---LWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHF  171 (1062)
T ss_pred             EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEE---EEEccCCceeeccccCCcceeeeeeCCCCcceE
Confidence            97665  556777888999999976   33 4677777788899   9987 4888888887777888899999 66665


Q ss_pred             EEEeC-CeEEEEeCC--------CCeeeecCCCCc-------------------------cEEEEEEcCCCCEEEEEecC
Q psy11524        182 AVGSY-NTLRLCDKV--------GWSHSLDKPDTG-------------------------SVYDLVWSNDATQIAGACAN  227 (323)
Q Consensus       182 ~~~~~-~~i~i~d~~--------~~~~~~~~~~~~-------------------------~v~~~~~~~~~~~l~~~~~d  227 (323)
                      ...+. |.+.+-+.-        +++.+....|.+                         ....++|+|.-+.++.....
T Consensus       172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p  251 (1062)
T KOG1912|consen  172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP  251 (1062)
T ss_pred             EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence            55444 666665532        122222222222                         01235778866655555666


Q ss_pred             c-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        228 V-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       228 ~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      . +.++|++-..++...  .-..+.+.-+.+-|+++  ...+.....+|.+.+|.-+.
T Consensus       252 rellv~dle~~~~l~vv--pier~~akfv~vlP~~~--rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  252 RELLVFDLEYECCLAVV--PIERGGAKFVDVLPDPR--RDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             cceEEEcchhhceeEEE--EeccCCcceeEeccCCC--cceEEEEecCCeEEEEEeec
Confidence            6 999999988888774  33334445566677653  13455556666666665433

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.52  E-value=2.7e-05  Score=68.37  Aligned_cols=180  Identities=9%  Similarity=-0.026  Sum_probs=103.9

Q ss_pred             EcCCCCeEEEEeeCCeEEEEeCCCCc-e-eEeeccCCCeEEEEECCCCCEEEEEcCC----CceEeeeEEeCCCC-eeeE
Q psy11524         89 WSPDSNKVLLTQAKSLVIKPLSPNNK-A-TKWQAHDGLILKVAWCSSTDLILSGGED----CKYKASFVWDTDGR-QLYS  161 (323)
Q Consensus        89 ~sp~~~~l~~~~~~~~~v~~~~~~~~-~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~i~v~d~~~~-~~~~  161 (323)
                      ++|||+.+...+...+.+...|..+. + .++ .-.+....++++|+|+++++.+.+    .++.   ..+.... .+..
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV-~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~---em~a~e~d~~vv  275 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQV-MVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLA---EMMAAERDWVVV  275 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEE-EeCCCcccceECCCCCEEEEeccCcccCccee---eeccccCceEEE
Confidence            45566655444444456666666543 1 122 123355678899999998887632    2233   3333211 1111


Q ss_pred             eecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCC-----CeeeecCCCCccEEEEEEcCCCCEEEEEec-Cc-EEEEEc
Q psy11524        162 SLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVG-----WSHSLDKPDTGSVYDLVWSNDATQIAGACA-NV-IHIFDI  234 (323)
Q Consensus       162 ~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~-i~iwd~  234 (323)
                      +...  .+  -++.++|++... ..+.|.+.|.+.     ........-......+.++|||+++++++. +. +.++|+
T Consensus       276 fni~--~i--ea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv  350 (635)
T PRK02888        276 FNIA--RI--EEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV  350 (635)
T ss_pred             EchH--HH--HHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence            1100  00  134457877665 335899999776     444444445677889999999999988876 44 999999


Q ss_pred             CCCce------------eeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        235 SSSSS------------SNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       235 ~~~~~------------~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      .+.+.            ..+  ..- .......+|.++|    ......-.+..+..|++..
T Consensus       351 ~k~k~~~~~~~~~~~~vvae--vev-GlGPLHTaFDg~G----~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        351 RKLDDLFDGKIKPRDAVVAE--PEL-GLGPLHTAFDGRG----NAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhhhhhhhccCCccceEEEe--ecc-CCCcceEEECCCC----CEEEeEeecceeEEEehHH
Confidence            87553            223  122 2233456788887    4444445566666666554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.48  E-value=1.6e-05  Score=68.45  Aligned_cols=215  Identities=13%  Similarity=0.098  Sum_probs=111.9

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEE-eCCCCe
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVW-DTDGRQ  158 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~-d~~~~~  158 (323)
                      ..-....++++|+|+++++++..  ...++........   ..+.-...+|.+.+ .+|+-....+|.   ++ +++...
T Consensus        31 ~~~~p~~ls~npngr~v~V~g~g--eY~iyt~~~~r~k---~~G~g~~~vw~~~n-~yAv~~~~~~I~---I~kn~~~~~  101 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCGDG--EYEIYTALAWRNK---AFGSGLSFVWSSRN-RYAVLESSSTIK---IYKNFKNEV  101 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEETT--EEEEEETTTTEEE---EEEE-SEEEE-TSS-EEEEE-TTS-EE---EEETTEE-T
T ss_pred             CCcCCeeEEECCCCCEEEEEcCC--EEEEEEccCCccc---ccCceeEEEEecCc-cEEEEECCCeEE---EEEcCcccc
Confidence            45568899999999999986444  4555542222111   12334568899854 566777788898   85 554443


Q ss_pred             eeEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCe-eeecCCCCccEEEEEEcCCCCEEEEEecCcEEEEEcCCC
Q psy11524        159 LYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWS-HSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISSS  237 (323)
Q Consensus       159 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~i~iwd~~~~  237 (323)
                      ...+.. +..+..+-.   |..|+..+.+.|.+||..+.. +.... .. .|..+.|+++|++++..+.+.+.+++....
T Consensus       102 ~k~i~~-~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~-v~-~vk~V~Ws~~g~~val~t~~~i~il~~~~~  175 (443)
T PF04053_consen  102 VKSIKL-PFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRID-VS-AVKYVIWSDDGELVALVTKDSIYILKYNLE  175 (443)
T ss_dssp             T------SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEES-S--E-EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred             ceEEcC-CcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEe-cC-CCcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence            333322 122333332   888888888899999988553 44443 22 389999999999999999888666654332


Q ss_pred             -----------ceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc---cCCCCccceeEEEEeeCC
Q psy11524        238 -----------SSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---LDKPDTGSVYDLVWSSDA  303 (323)
Q Consensus       238 -----------~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~g  303 (323)
                                 .....  .......|.+..|..+       +.++...+.+.- -+...   +... ..++.=+...|..
T Consensus       176 ~~~~~~~~g~e~~f~~--~~E~~~~IkSg~W~~d-------~fiYtT~~~lkY-l~~Ge~~~i~~l-d~~~yllgy~~~~  244 (443)
T PF04053_consen  176 AVAAIPEEGVEDAFEL--IHEISERIKSGCWVED-------CFIYTTSNHLKY-LVNGETGIIAHL-DKPLYLLGYLPKE  244 (443)
T ss_dssp             HHHHBTTTB-GGGEEE--EEEE-S--SEEEEETT-------EEEEE-TTEEEE-EETTEEEEEEE--SS--EEEEEETTT
T ss_pred             hcccccccCchhceEE--EEEecceeEEEEEEcC-------EEEEEcCCeEEE-EEcCCcceEEEc-CCceEEEEEEccC
Confidence                       01221  1222457778888643       555555554433 11111   1112 4566677778877


Q ss_pred             CeeEeeecCCeEEEEEe
Q psy11524        304 TQIAGACANGSLLLGTI  320 (323)
Q Consensus       304 ~~l~s~~~dg~i~~~~l  320 (323)
                      +.|.....|+.+..+.|
T Consensus       245 ~~ly~~Dr~~~v~~~~l  261 (443)
T PF04053_consen  245 NRLYLIDRDGNVISYEL  261 (443)
T ss_dssp             TEEEEE-TT--EEEEE-
T ss_pred             CEEEEEECCCCEEEEEE
Confidence            78888889998888776

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1275|consensus

Probab=98.47  E-value=6.5e-06  Score=73.71  Aligned_cols=172  Identities=11%  Similarity=0.102  Sum_probs=119.8

Q ss_pred             CCEEEEEcCCCceEeeeEEeCCCCeeeEeec-CCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCC-eeeecCCCCccEE
Q psy11524        134 TDLILSGGEDCKYKASFVWDTDGRQLYSSLT-HDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGW-SHSLDKPDTGSVY  210 (323)
Q Consensus       134 ~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~-~~~~~~~~~~~v~  210 (323)
                      +..++.|+-...+.   .+|+++.+...... ..+.|.=++.  +++.+.+|.. |+|.+-|.++. .+..+..|.+.+.
T Consensus       147 ~~~~i~Gg~Q~~li---~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS  221 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLI---HIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS  221 (1118)
T ss_pred             Ccceeecchhhhee---eeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence            34566666666666   78886554444333 3334554443  5778888887 69999998864 5668888999988


Q ss_pred             EEEEcCCCCEEEEEec---------Cc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEE
Q psy11524        211 DLVWSNDATQIAGACA---------NV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLS  280 (323)
Q Consensus       211 ~~~~~~~~~~l~~~~~---------d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~  280 (323)
                      .+..  .|+.|++++.         |. |++||++..+.+.-+  .-+.++ .-+.|+|.-.   ..+++.+..|...+.
T Consensus       222 DfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI--~~~~~P-~flrf~Psl~---t~~~V~S~sGq~q~v  293 (1118)
T KOG1275|consen  222 DFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI--QFPYGP-QFLRFHPSLT---TRLAVTSQSGQFQFV  293 (1118)
T ss_pred             eeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCc--ccccCc-hhhhhccccc---ceEEEEecccceeec
Confidence            7655  5778888874         56 899999988776642  222222 4466777652   677777877877776


Q ss_pred             ecccc---------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        281 MWSHS---------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       281 ~~~~~---------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      +..+.         +... +..+.++++|++|+.||.|..+|.|.+|.
T Consensus       294 d~~~lsNP~~~~~~v~p~-~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  294 DTATLSNPPAGVKMVNPN-GSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccccCCCccceeEEccC-CCcceeEEecCCCceEEEecccCcEeeec
Confidence            63221         1111 45599999999999999999999999996

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.46  E-value=5.4e-05  Score=67.80  Aligned_cols=186  Identities=15%  Similarity=0.078  Sum_probs=108.5

Q ss_pred             CCEEEEEEcCCCCeEEEEee------C-CeEEEEeCCCCceeEeeccCCCeEEEEECCCCCEEEEEcCCCce-E------
Q psy11524         82 PPVYSAAWSPDSNKVLLTQA------K-SLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKY-K------  147 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~------~-~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i-~------  147 (323)
                      ..+.+.+++|+|+.+++...      + ...|++.+..+....+... .......|+|||+.|++......+ +      
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~  428 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA  428 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC-CCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence            46789999999999988762      2 3467777765544444332 247889999999887777533121 1      


Q ss_pred             --eeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeCCeEEE---EeCCCCeeee------cCCCCccEEEEEEcC
Q psy11524        148 --ASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRL---CDKVGWSHSL------DKPDTGSVYDLVWSN  216 (323)
Q Consensus       148 --~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i---~d~~~~~~~~------~~~~~~~v~~~~~~~  216 (323)
                        ++++.++++.....  ..+..|..+.|||||..++....+.|++   -...+.....      .......+.++.|..
T Consensus       429 ~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~  506 (591)
T PRK13616        429 TGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT  506 (591)
T ss_pred             CceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec
Confidence              11133444333322  3356799999999999998877777766   3333222222      222334468899999


Q ss_pred             CCCEEEEEecCc-EEEEEcCC-CceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCe
Q psy11524        217 DATQIAGACANV-IHIFDISS-SSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDL  277 (323)
Q Consensus       217 ~~~~l~~~~~d~-i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~  277 (323)
                      ++.++ ++..++ -.+|.+.- |.....+.-.....++..++=++      ..|.+.+.++.+
T Consensus       507 ~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~------~~iyv~~~~g~~  562 (591)
T PRK13616        507 GDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP------STVYVTDARAVL  562 (591)
T ss_pred             CCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCC------ceEEEEcCCceE
Confidence            99854 555555 44444332 22211100112345666666665      245565655543

>KOG4714|consensus

Probab=98.46  E-value=6e-07  Score=68.71  Aligned_cols=154  Identities=16%  Similarity=0.178  Sum_probs=93.6

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCce---eEeeccCCCeEEEEECCCCCEEEEEcCCCceE---eeeEEe
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKA---TKWQAHDGLILKVAWCSSTDLILSGGEDCKYK---ASFVWD  153 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~---~i~v~d  153 (323)
                      |.++-.+-..+-.++.++++..+ |.+.+.+.+...   .....-...-.+.+....++.+.++. -|++.   +.+.|+
T Consensus        88 ~sep~p~~~~s~~~t~V~~~~~d-g~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~-~g~~n~~d~~~a~~  165 (319)
T KOG4714|consen   88 NSEIDPNDACTMTDNRVCIGYAD-GSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGG-CGNWNAQDNFYANT  165 (319)
T ss_pred             cCCCCCcccccccCCceEecCCC-ceEEEEechHHHhhhhhcccccccccccceeecccEEecCC-cceEeeccceeeec
Confidence            44444444445556778777666 688887765521   11111111112333334455554432 33333   123666


Q ss_pred             CCCCee--eEeecCCCceeEEEEecCC-CEEEEEeCC-eEEEEeCCCC--eeeecCCCCccEEEEEEcC-CCCEEEEEec
Q psy11524        154 TDGRQL--YSSLTHDHPISSLAWAPGG-DMFAVGSYN-TLRLCDKVGW--SHSLDKPDTGSVYDLVWSN-DATQIAGACA  226 (323)
Q Consensus       154 ~~~~~~--~~~~~~~~~v~~~~~~p~~-~~l~~~~~~-~i~i~d~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~  226 (323)
                      ++....  ..... ...|.+++-+|.. +.+++|+++ .+-+||.+..  ....+..|+..+..+-|+| ++..|+++++
T Consensus       166 ~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se  244 (319)
T KOG4714|consen  166 LDPIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE  244 (319)
T ss_pred             ccccccccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC
Confidence            642221  11122 2348899999964 455666665 9999998743  4557778999999999999 7889999999


Q ss_pred             Cc-EEEEEcCC
Q psy11524        227 NV-IHIFDISS  236 (323)
Q Consensus       227 d~-i~iwd~~~  236 (323)
                      || +.-||..+
T Consensus       245 dGslw~wdas~  255 (319)
T KOG4714|consen  245 DGSLWHWDAST  255 (319)
T ss_pred             CCcEEEEcCCC
Confidence            99 99999653

>KOG1275|consensus

Probab=98.40  E-value=1.2e-05  Score=72.01  Aligned_cols=179  Identities=12%  Similarity=0.134  Sum_probs=119.8

Q ss_pred             CCeEEEEeeCCeEEEEeCCCCc-eeE-eeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCce
Q psy11524         93 SNKVLLTQAKSLVIKPLSPNNK-ATK-WQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPI  169 (323)
Q Consensus        93 ~~~l~~~~~~~~~v~~~~~~~~-~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v  169 (323)
                      +..++.|+-.+ .+..+|..+. ... ..-..+.|.-++.  +++.+.+|...|+|.   +-|.+ .+...++..|.+.+
T Consensus       147 ~~~~i~Gg~Q~-~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~---LrD~~s~~~iht~~aHs~si  220 (1118)
T KOG1275|consen  147 PSTLIMGGLQE-KLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVF---LRDPNSFETIHTFDAHSGSI  220 (1118)
T ss_pred             Ccceeecchhh-heeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEE---eecCCcCceeeeeeccccce
Confidence            44566665554 5666666654 222 2222334555554  578999999999999   99996 67888999999999


Q ss_pred             eEEEEecCCCEEEEEeC---------C-eEEEEeCCCCeeeecCCCCccEEEEEEcCC-CCEEEEEecCc-EEEEEcCC-
Q psy11524        170 SSLAWAPGGDMFAVGSY---------N-TLRLCDKVGWSHSLDKPDTGSVYDLVWSND-ATQIAGACANV-IHIFDISS-  236 (323)
Q Consensus       170 ~~~~~~p~~~~l~~~~~---------~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~-i~iwd~~~-  236 (323)
                      ..+..  .|+.|++++.         | .|++||++...............-+.|.|. ...+++++..| ..+-|..+ 
T Consensus       221 SDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~l  298 (1118)
T KOG1275|consen  221 SDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATL  298 (1118)
T ss_pred             eeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeecccccc
Confidence            87665  4889988873         3 488999986432221112222355677773 34677888888 99888332 


Q ss_pred             Cce-eeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecc
Q psy11524        237 SSS-SNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWS  283 (323)
Q Consensus       237 ~~~-~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~  283 (323)
                      +.+ .....+......+..+.+++++    ..+++++.+|.+.+|.-.
T Consensus       299 sNP~~~~~~v~p~~s~i~~fDiSsn~----~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  299 SNPPAGVKMVNPNGSGISAFDISSNG----DALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             CCCccceeEEccCCCcceeEEecCCC----ceEEEecccCcEeeecCC
Confidence            222 1111123344559999999999    899999999999999743

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.38  E-value=4.6e-06  Score=71.39  Aligned_cols=75  Identities=17%  Similarity=0.267  Sum_probs=66.6

Q ss_pred             ecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC
Q psy11524         77 TLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD  155 (323)
Q Consensus        77 ~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~  155 (323)
                      .+.....|.+++++|+.+.++.|..| |.|.+||...+...+....-.+..++|+|+|..+++|+..|.+.   +||+.
T Consensus       255 sipL~s~v~~ca~sp~E~kLvlGC~D-gSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ---~FD~A  329 (545)
T PF11768_consen  255 SIPLPSQVICCARSPSEDKLVLGCED-GSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQ---CFDMA  329 (545)
T ss_pred             EEecCCcceEEecCcccceEEEEecC-CeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEE---EEEee
Confidence            34578999999999999999999888 69999999888666666677789999999999999999999999   99985

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.38  E-value=0.00017  Score=57.50  Aligned_cols=171  Identities=14%  Similarity=0.043  Sum_probs=95.7

Q ss_pred             CCCEEEEEcCCCceEeeeEEeC-CCCeeeEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCC-eeee-cCCC---
Q psy11524        133 STDLILSGGEDCKYKASFVWDT-DGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGW-SHSL-DKPD---  205 (323)
Q Consensus       133 ~~~~l~~~~~d~~i~~i~v~d~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~-~~~~-~~~~---  205 (323)
                      ++..+++++.++.+.   .||. +++.+..... ...+...... ++..+++++. +.++.+|..+. ..-. ....   
T Consensus        35 ~~~~v~~~~~~~~l~---~~d~~tG~~~W~~~~-~~~~~~~~~~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~  109 (238)
T PF13360_consen   35 DGGRVYVASGDGNLY---ALDAKTGKVLWRFDL-PGPISGAPVV-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP  109 (238)
T ss_dssp             ETTEEEEEETTSEEE---EEETTTSEEEEEEEC-SSCGGSGEEE-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT
T ss_pred             eCCEEEEEcCCCEEE---EEECCCCCEEEEeec-cccccceeee-cccccccccceeeeEecccCCcceeeeeccccccc
Confidence            566777778899999   9998 6777776664 2222221222 3445555555 59999996644 3322 1111   


Q ss_pred             CccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCcc--ce-------EEEEEccCCCCccceEEEE----
Q psy11524        206 TGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSH--EI-------TQLAVNQTGSLQERHVAFI----  271 (323)
Q Consensus       206 ~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~--~v-------~~~~~~p~g~~~d~~l~~~----  271 (323)
                      ...........++..++.+..++ |..+|+++|+.+..........  .+       ..+.+. +     +.+.+.    
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~v~~~~~~g  183 (238)
T PF13360_consen  110 AGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-D-----GRVYVSSGDG  183 (238)
T ss_dssp             CSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-T-----TEEEEECCTS
T ss_pred             cccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-C-----CEEEEEcCCC
Confidence            11122222333377888888888 9999999999887643422111  11       122222 1     234444    


Q ss_pred             -----eCCCCeEEEecccccCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        272 -----DKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       272 -----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                           +......+|...       ...+.. ....++..|+.++.++.+..+++.+
T Consensus       184 ~~~~~d~~tg~~~w~~~-------~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~t  231 (238)
T PF13360_consen  184 RVVAVDLATGEKLWSKP-------ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKT  231 (238)
T ss_dssp             SEEEEETTTTEEEEEEC-------SS-ECE-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred             eEEEEECCCCCEEEEec-------CCCccC-CceeeCCEEEEEeCCCEEEEEECCC
Confidence                 444444444221       111222 1346777888888999999998753

...

>KOG2114|consensus

Probab=98.37  E-value=0.00028  Score=63.33  Aligned_cols=190  Identities=15%  Similarity=0.169  Sum_probs=121.4

Q ss_pred             EEEcCCCCeEEEEeeCCeEEEEeCCCCce-eEeeccCCC-eEEEEECCCCCEEEEEcCCCc-----eEeeeEEeCC----
Q psy11524         87 AAWSPDSNKVLLTQAKSLVIKPLSPNNKA-TKWQAHDGL-ILKVAWCSSTDLILSGGEDCK-----YKASFVWDTD----  155 (323)
Q Consensus        87 ~~~sp~~~~l~~~~~~~~~v~~~~~~~~~-~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~~-----i~~i~v~d~~----  155 (323)
                      -+|++.+..++.|..+ |.|.+++..-.. +.++++... |..+-...+..+|++.+.|+.     ++   +|+++    
T Consensus        29 sc~~s~~~~vvigt~~-G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llk---iw~lek~~~  104 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTAD-GRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLK---IWDLEKVDK  104 (933)
T ss_pred             eEEcCCCceEEEeecc-ccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEE---EecccccCC
Confidence            3577888888888777 688888776654 677777776 444433333468888877654     66   99983    


Q ss_pred             CC---ee--eEeec-----CCCceeEEEEecCCCEEEEEeCC-eEEEEe---CCCC--eeeecCCCCccEEEEEEcCCCC
Q psy11524        156 GR---QL--YSSLT-----HDHPISSLAWAPGGDMFAVGSYN-TLRLCD---KVGW--SHSLDKPDTGSVYDLVWSNDAT  219 (323)
Q Consensus       156 ~~---~~--~~~~~-----~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d---~~~~--~~~~~~~~~~~v~~~~~~~~~~  219 (323)
                      +.   ++  ..+..     .+.++.+++.+.+-+.+++|-.| .|..+.   ++..  ..........+|+.+++..+++
T Consensus       105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~  184 (933)
T KOG2114|consen  105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK  184 (933)
T ss_pred             CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence            22   22  11222     35678899999988888888875 777775   2322  3333344567899999999988


Q ss_pred             E-EEEEecCcEEEEEcCCCce-eeeecCCCCccceEEEEEccCCC----CccceEEEEeCCCCeEEEec
Q psy11524        220 Q-IAGACANVIHIFDISSSSS-SNVTAPLSHSHEITQLAVNQTGS----LQERHVAFIDKNRDLYLSMW  282 (323)
Q Consensus       220 ~-l~~~~~d~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~p~g~----~~d~~l~~~~~~~~~~~~~~  282 (323)
                      . +.+++...|.+|.+....+ ...  +..++.++.|..|++...    ..+..+.+++.++.-.-|.+
T Consensus       185 s~lFv~Tt~~V~~y~l~gr~p~~~~--ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf  251 (933)
T KOG2114|consen  185 SVLFVATTEQVMLYSLSGRTPSLKV--LDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAF  251 (933)
T ss_pred             eeEEEEecceeEEEEecCCCcceee--eccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeee
Confidence            7 3444444499999874332 222  567888999999988652    22334444444444443333

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.34  E-value=0.00034  Score=55.36  Aligned_cols=198  Identities=10%  Similarity=0.055  Sum_probs=101.5

Q ss_pred             EeeccCCCeEEEEECCCCC-EEEEEcCCCceEeeeEEeCCCCeeeEeecC-CCceeEEEEecCCCEEEEEeCC-eEEEEe
Q psy11524        117 KWQAHDGLILKVAWCSSTD-LILSGGEDCKYKASFVWDTDGRQLYSSLTH-DHPISSLAWAPGGDMFAVGSYN-TLRLCD  193 (323)
Q Consensus       117 ~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~~~~-~i~i~d  193 (323)
                      .+.+-...+..++|.|+.+ ++++....+.|.   .++.+++.+..+.-. .+..-.+++..++.++++.-.. .+.+++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~---els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIY---ELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEE---EEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEE---EEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence            4455566799999999754 666777778887   888888888776543 3567889998777555544334 888888


Q ss_pred             CC--CCe--e------ee--cCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCC---Cceeeeec------CCCCccc
Q psy11524        194 KV--GWS--H------SL--DKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISS---SSSSNVTA------PLSHSHE  251 (323)
Q Consensus       194 ~~--~~~--~------~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~---~~~~~~~~------~~~~~~~  251 (323)
                      +.  +..  .      ..  ...++..+..++|+|.++.|+.+-+.. ..+|.+..   ...+....      .......
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  172 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD  172 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence            73  111  1      11  112445689999999888888887777 77777654   22111100      0112345


Q ss_pred             eEEEEEccCCC------CccceEEEEeCCCCe-EEEecccccCCC--CccceeEEEEeeCCCeeEeeecCCeEEEE
Q psy11524        252 ITQLAVNQTGS------LQERHVAFIDKNRDL-YLSMWSHSLDKP--DTGSVYDLVWSSDATQIAGACANGSLLLG  318 (323)
Q Consensus       252 v~~~~~~p~g~------~~d~~l~~~~~~~~~-~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~s~~~dg~i~~~  318 (323)
                      +.+++++|...      ...+.|...+.+|.+ ..+.+..+....  .-...-.|+|.++|+ |...+.-+..+++
T Consensus       173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f  247 (248)
T PF06977_consen  173 LSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF  247 (248)
T ss_dssp             --EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred             ccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence            78889998762      222333333444432 223332211000  013578899999996 4444455555444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2114|consensus

Probab=98.32  E-value=0.00016  Score=64.76  Aligned_cols=189  Identities=13%  Similarity=0.072  Sum_probs=122.1

Q ss_pred             EeccCCcceeeeeeccc---cccccceeeecC-CCCC-EEEEEEcCCCCeEEEEeeCCe----EEEEeCCCCc-------
Q psy11524         51 PISPYISVLHSYAASHS---WPQALSLCRTLN-VSPP-VYSAAWSPDSNKVLLTQAKSL----VIKPLSPNNK-------  114 (323)
Q Consensus        51 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~-v~~~~~sp~~~~l~~~~~~~~----~v~~~~~~~~-------  114 (323)
                      .+++.+..++..-+.|.   .+...++.+.++ +... |..+-...+..+|++.+.+..    .+++|+++..       
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~  109 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ  109 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence            34555555544444442   234444433343 3333 444444444467777776655    7899987643       


Q ss_pred             -e--eEeec-----cCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC-----CCCeeeEeecCCCceeEEEEecCCCE-
Q psy11524        115 -A--TKWQA-----HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT-----DGRQLYSSLTHDHPISSLAWAPGGDM-  180 (323)
Q Consensus       115 -~--~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~-----~~~~~~~~~~~~~~v~~~~~~p~~~~-  180 (323)
                       .  ..+..     .+.++.+++.+.+-+.+|.|-.+|.|.   .+.-     ++...........+|+.+++..++.. 
T Consensus       110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~---~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~  186 (933)
T KOG2114|consen  110 CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVI---CYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV  186 (933)
T ss_pred             eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEE---EEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence             1  12222     245688899999888999999999998   7753     13333333445679999999988877 


Q ss_pred             EEEEeCCeEEEEeCCCCe--eeecCCCCccEEEEEEcCCCCEEEEEecCcEEEEEcCCCceeee
Q psy11524        181 FAVGSYNTLRLCDKVGWS--HSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISSSSSSNV  242 (323)
Q Consensus       181 l~~~~~~~i~i~d~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~  242 (323)
                      +.++....|.+|.+.++.  ......+...+.|..+++....+++++...+.+||....++...
T Consensus       187 lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfa  250 (933)
T KOG2114|consen  187 LFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFA  250 (933)
T ss_pred             EEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeee
Confidence            444455688999987665  44566678889999999866556666655599999876555554

>KOG1008|consensus

Probab=98.30  E-value=4.2e-07  Score=78.05  Aligned_cols=195  Identities=15%  Similarity=0.146  Sum_probs=121.9

Q ss_pred             CCCCEEEEEEcCCCC--eEEEEeeCCeEEEEeCCCCc----eeEeeccCCCeEEEEECC-CCCEEEEEcC----CCceEe
Q psy11524         80 VSPPVYSAAWSPDSN--KVLLTQAKSLVIKPLSPNNK----ATKWQAHDGLILKVAWCS-STDLILSGGE----DCKYKA  148 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~--~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~-~~~~l~~~~~----d~~i~~  148 (323)
                      ....+.|++++-+.+  .+++|..+ |.|-+-.....    ....+++...+++++|++ |.+.||+|-.    |..+. 
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~at-G~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~-  132 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSAT-GNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK-  132 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhcccc-CceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcc-
Confidence            456677887765443  44555444 77777655443    234567788899999998 5667777643    56788 


Q ss_pred             eeEEeCCCC-----eeeEeec-CCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcC-CCCE
Q psy11524        149 SFVWDTDGR-----QLYSSLT-HDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSN-DATQ  220 (323)
Q Consensus       149 i~v~d~~~~-----~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~-~~~~  220 (323)
                        |||+...     ....+.. ......+++|-.+.+++.+|... .+.++|++........-....+..+..+| .+.|
T Consensus       133 --Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY  210 (783)
T KOG1008|consen  133 --IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNY  210 (783)
T ss_pred             --ceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCc
Confidence              9998532     2222222 33456688888788888888775 99999998554443333445677788888 7778


Q ss_pred             EEEEecCc-EEEEE-cCC-CceeeeecC--CCCccceEEEEEccCCCCccceEEEEeCC-CCeEEEec
Q psy11524        221 IAGACANV-IHIFD-ISS-SSSSNVTAP--LSHSHEITQLAVNQTGSLQERHVAFIDKN-RDLYLSMW  282 (323)
Q Consensus       221 l~~~~~d~-i~iwd-~~~-~~~~~~~~~--~~~~~~v~~~~~~p~g~~~d~~l~~~~~~-~~~~~~~~  282 (323)
                      +++-. |+ |.+|| .++ ..++..+.-  ......+..++|.|...   +.+++...+ +.++.+++
T Consensus       211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt---glla~l~RdS~tIrlydi  274 (783)
T KOG1008|consen  211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT---GLLAVLSRDSITIRLYDI  274 (783)
T ss_pred             eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc---chhhhhccCcceEEEecc
Confidence            87766 77 99999 332 223332100  11123588999999764   444444332 33444443

>KOG2066|consensus

Probab=98.29  E-value=7.4e-05  Score=66.31  Aligned_cols=179  Identities=9%  Similarity=0.042  Sum_probs=118.8

Q ss_pred             CCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeee
Q psy11524        123 GLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSL  201 (323)
Q Consensus       123 ~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~  201 (323)
                      ..+.+++++  ++.++.|..+|.++   +++..+.. .+...|...      .-+|.++++++.| ++.|-.+-+.....
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~---~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~  107 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVY---LTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT  107 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEE---EEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence            345666665  67999999999999   99988776 444334333      5579999999996 88888865443333


Q ss_pred             cCCCCccEEEEEEcCC-----CCEEEEEecCcEEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCC
Q psy11524        202 DKPDTGSVYDLVWSND-----ATQIAGACANVIHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRD  276 (323)
Q Consensus       202 ~~~~~~~v~~~~~~~~-----~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~  276 (323)
                      ......++.+++++|+     .+.+++|+..|+.++.-+--.......+....++|.++.|.       +.+..|-.+.+
T Consensus       108 ~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~-------g~lIAWand~G  180 (846)
T KOG2066|consen  108 QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWR-------GNLIAWANDDG  180 (846)
T ss_pred             eEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEec-------CcEEEEecCCC
Confidence            3335678999999997     56788888777666653211111111146678899999997       45777888888


Q ss_pred             eEEEecccc-----cCCCC-----ccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        277 LYLSMWSHS-----LDKPD-----TGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       277 ~~~~~~~~~-----~~~~~-----~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      +.+++....     +...+     ..--..+.|.++. .|+.|-. .+|++..+.+
T Consensus       181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~-d~v~i~~I~~  234 (846)
T KOG2066|consen  181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWG-DSVKICSIKK  234 (846)
T ss_pred             cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecC-CeEEEEEEec
Confidence            888888764     11111     1223567887765 4555543 4577777653

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=0.0018  Score=55.39  Aligned_cols=193  Identities=14%  Similarity=0.097  Sum_probs=125.9

Q ss_pred             CCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcC---CCceEeeeEEeCC-C
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGE---DCKYKASFVWDTD-G  156 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~i~v~d~~-~  156 (323)
                      ..-..++.++.+..++....+...+.+.|.... ......-......++++|+++.+..+..   ++++.   +.|.. .
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vs---vid~~t~  150 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVS---VIDAATN  150 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEE---EEeCCCC
Confidence            445678899999977776655568888885443 2222222225678999999987777765   57777   88875 4


Q ss_pred             CeeeEeecCCCceeEEEEecCCCEEEEEeC--CeEEEEeCCCCeeee-----cCCCCccEEEEEEcCCCCEEEEEecC--
Q psy11524        157 RQLYSSLTHDHPISSLAWAPGGDMFAVGSY--NTLRLCDKVGWSHSL-----DKPDTGSVYDLVWSNDATQIAGACAN--  227 (323)
Q Consensus       157 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--~~i~i~d~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d--  227 (323)
                      +..........+ ..++++|+|..++....  +.+.+.|..+..+..     ..........+.++|+|+++......  
T Consensus       151 ~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~  229 (381)
T COG3391         151 KVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG  229 (381)
T ss_pred             eEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCC
Confidence            444443333334 88999999998877775  499999977654442     12233456789999999966654432  


Q ss_pred             -c-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCC-CCeEEEecc
Q psy11524        228 -V-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKN-RDLYLSMWS  283 (323)
Q Consensus       228 -~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~-~~~~~~~~~  283 (323)
                       + +...|..++.........+.. ....+..+|+|    ..+.+.+.. +.+.+.+..
T Consensus       230 ~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g----~~~yv~~~~~~~V~vid~~  283 (381)
T COG3391         230 SNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAG----KAAYVANSQGGTVSVIDGA  283 (381)
T ss_pred             CceEEEEeCCCceEEEeccccccC-CCCceeECCCC----CEEEEEecCCCeEEEEeCC
Confidence             6 888998888776641122222 56678899998    555555333 444444433

>KOG0882|consensus

Probab=98.27  E-value=3.8e-05  Score=63.62  Aligned_cols=196  Identities=12%  Similarity=0.110  Sum_probs=126.3

Q ss_pred             cCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCC-c----eeEeeccCCCeEEEEECCCCCEEEEEcC-CCceEeeeE
Q psy11524         78 LNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN-K----ATKWQAHDGLILKVAWCSSTDLILSGGE-DCKYKASFV  151 (323)
Q Consensus        78 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~-~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~i~v  151 (323)
                      +-|...|+.+... -.+++.+++-+ |.++.|.... .    +..+..|-+.|.+++.+-++.++.+.+. |..++   +
T Consensus         6 ymhrd~i~hv~~t-ka~fiiqASlD-Gh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~K---v   80 (558)
T KOG0882|consen    6 YMHRDVITHVFPT-KAKFIIQASLD-GHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVK---V   80 (558)
T ss_pred             hcccceeeeEeee-hhheEEeeecc-hhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCccccee---E
Confidence            3467777776655 35677888777 6999998765 2    4455678888999999999999999777 99999   9


Q ss_pred             EeCCCCee---eEeecCCCceeEEEEecCC--CEEEEEeC-C-eEEEEeCCCC---eeeecCCCCccEEEEEEcCCCCEE
Q psy11524        152 WDTDGRQL---YSSLTHDHPISSLAWAPGG--DMFAVGSY-N-TLRLCDKVGW---SHSLDKPDTGSVYDLVWSNDATQI  221 (323)
Q Consensus       152 ~d~~~~~~---~~~~~~~~~v~~~~~~p~~--~~l~~~~~-~-~i~i~d~~~~---~~~~~~~~~~~v~~~~~~~~~~~l  221 (323)
                      +|++.--.   ..+...++.+. ...+|..  ..++++.. . .+.++|-.+.   ......-|..+|..+.++|.+..+
T Consensus        81 fDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~  159 (558)
T KOG0882|consen   81 FDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA  159 (558)
T ss_pred             EEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence            99853222   22222233222 2223321  13455444 3 8999996643   223445588999999999999999


Q ss_pred             EEEecCc-EEEEEcCC------Cceeeeec-------CCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecc
Q psy11524        222 AGACANV-IHIFDISS------SSSSNVTA-------PLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWS  283 (323)
Q Consensus       222 ~~~~~d~-i~iwd~~~------~~~~~~~~-------~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~  283 (323)
                      ++....| |.-|..+.      .+....++       +........++.|+|++    ..+...+.+..++++.+.
T Consensus       160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g----~qistl~~DrkVR~F~~K  231 (558)
T KOG0882|consen  160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG----AQISTLNPDRKVRGFVFK  231 (558)
T ss_pred             eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc----CcccccCcccEEEEEEec
Confidence            9998889 99998662      11111100       12234567889999999    444444444444444443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.24  E-value=0.00064  Score=58.30  Aligned_cols=139  Identities=16%  Similarity=0.159  Sum_probs=77.9

Q ss_pred             CCeEEEEeeCCeEEEEeCCCCceeEee-ccCCCe-EEEEECCCCCEEEEEcCCCceEeeeEEeC-CCCeeeEeecCCCce
Q psy11524         93 SNKVLLTQAKSLVIKPLSPNNKATKWQ-AHDGLI-LKVAWCSSTDLILSGGEDCKYKASFVWDT-DGRQLYSSLTHDHPI  169 (323)
Q Consensus        93 ~~~l~~~~~~~~~v~~~~~~~~~~~~~-~~~~~v-~~~~~~~~~~~l~~~~~d~~i~~i~v~d~-~~~~~~~~~~~~~~v  169 (323)
                      +..+++++.+ +.++-+|..+....+. .-...+ ..+..  ++..++.++.++.+.   .+|. +++.+....... .+
T Consensus        65 ~~~v~v~~~~-g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~---ald~~tG~~~W~~~~~~-~~  137 (377)
T TIGR03300        65 GGKVYAADAD-GTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVI---ALDAEDGKELWRAKLSS-EV  137 (377)
T ss_pred             CCEEEEECCC-CeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEE---EEECCCCcEeeeeccCc-ee
Confidence            5567666555 5888888654422211 111121 12222  467788888899999   9998 477666554322 22


Q ss_pred             eE-EEEecCCCEEEEEeC-CeEEEEeCCCCeeeecCCCCccE------EEEEEcCCCCEEEEEecCc-EEEEEcCCCcee
Q psy11524        170 SS-LAWAPGGDMFAVGSY-NTLRLCDKVGWSHSLDKPDTGSV------YDLVWSNDATQIAGACANV-IHIFDISSSSSS  240 (323)
Q Consensus       170 ~~-~~~~p~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~v------~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~  240 (323)
                      .+ ...  .+..++.++. +.++.+|.++.............      .+.... + ..++.+..++ +..+|.++|+.+
T Consensus       138 ~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~  213 (377)
T TIGR03300       138 LSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPL  213 (377)
T ss_pred             ecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEe
Confidence            21 122  2345555555 59999998754333211111111      111111 2 3677788888 999999999876


Q ss_pred             ee
Q psy11524        241 NV  242 (323)
Q Consensus       241 ~~  242 (323)
                      .+
T Consensus       214 W~  215 (377)
T TIGR03300       214 WE  215 (377)
T ss_pred             ee
Confidence            54

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.23  E-value=0.00038  Score=59.95  Aligned_cols=164  Identities=13%  Similarity=0.169  Sum_probs=87.1

Q ss_pred             ceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCeeeecCC--------CCccEEEEEEcC
Q psy11524        145 KYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLDKP--------DTGSVYDLVWSN  216 (323)
Q Consensus       145 ~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~--------~~~~v~~~~~~~  216 (323)
                      .|.   +|+..|+.+..+.-..+.+.++.|+.+.++++...+|.+++||+.+.. +...+        ....+....+..
T Consensus        62 ~I~---iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~  137 (410)
T PF04841_consen   62 SIQ---IYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK  137 (410)
T ss_pred             EEE---EECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC
Confidence            367   999999988887666689999999987777766666799999987665 21111        111222233333


Q ss_pred             CCCEEEEEecCc-EEEEE-cCCCceeeee-cCCCCcc------ceEE-EEEccCCCCccceEEEEeCCCCeEEEeccccc
Q psy11524        217 DATQIAGACANV-IHIFD-ISSSSSSNVT-APLSHSH------EITQ-LAVNQTGSLQERHVAFIDKNRDLYLSMWSHSL  286 (323)
Q Consensus       217 ~~~~l~~~~~d~-i~iwd-~~~~~~~~~~-~~~~~~~------~v~~-~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~~  286 (323)
                      +|  ++.-..++ +.+.. .......... .......      .... ..++.+.    .........+.+.+.+-.. .
T Consensus       138 ~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~----~~~i~~~~g~~i~~i~~~~-~  210 (410)
T PF04841_consen  138 NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR----VVEILLANGETIYIIDENS-F  210 (410)
T ss_pred             CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc----ceEEEEecCCEEEEEEccc-c
Confidence            55  33333444 44433 2221111110 0011000      0000 1222222    1122222222233222111 0


Q ss_pred             CCC-CccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        287 DKP-DTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       287 ~~~-~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      ... ..+++..++.||+|++||.-..+|.+.+..
T Consensus       211 ~~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~s  244 (410)
T PF04841_consen  211 KQIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVS  244 (410)
T ss_pred             ccccCCCCeEEEEECCCCCEEEEEECCCCEEEEE
Confidence            000 146899999999999999999999987764

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1832|consensus

Probab=98.23  E-value=1.9e-06  Score=76.95  Aligned_cols=180  Identities=12%  Similarity=0.055  Sum_probs=126.3

Q ss_pred             eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeC--C-eEE
Q psy11524        115 ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY--N-TLR  190 (323)
Q Consensus       115 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--~-~i~  190 (323)
                      .+.+..|....++++|+-+.++|+.|+..|.|+   ++++. |.......+|..+++.+.=+.||..+++.+.  . -..
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik---~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIK---IFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEE---EEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence            445667888899999999999999999999999   99995 7777788899999999998889988777665  3 577


Q ss_pred             EEeCCCC--eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCC---CccceEEEEEccCCCCc
Q psy11524        191 LCDKVGW--SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLS---HSHEITQLAVNQTGSLQ  264 (323)
Q Consensus       191 i~d~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~p~g~~~  264 (323)
                      +|++...  ....+    ..-.++.|+.....-+.|+... ..+||+.++.++.++ +.+   ....-+...|+|+.   
T Consensus      1171 LW~~~s~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty-lt~~~~~~y~~n~a~FsP~D--- 1242 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY-LTDTVTSSYSNNLAHFSPCD--- 1242 (1516)
T ss_pred             HhccccccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHh-cCcchhhhhhccccccCCCc---
Confidence            9997641  22111    2356778887655555566556 999999999887763 222   23344678899984   


Q ss_pred             cceEEEEeCCCCeEEEecccc--cCCCCc-cceeEEEEeeCCCeeEeeec
Q psy11524        265 ERHVAFIDKNRDLYLSMWSHS--LDKPDT-GSVYDLVWSSDATQIAGACA  311 (323)
Q Consensus       265 d~~l~~~~~~~~~~~~~~~~~--~~~~~~-~~v~~~~~s~~g~~l~s~~~  311 (323)
                        .+.+|+.    .+|++...  +.+... ..-..-.|+|.|..++.-+.
T Consensus      1243 --~LIlndG----vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSE 1286 (1516)
T KOG1832|consen 1243 --TLILNDG----VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSE 1286 (1516)
T ss_pred             --ceEeeCc----eeeeeccHHHHhhhhhheecccccccCCCceEEeech
Confidence              6666653    46776653  111100 11123358999988776653

>KOG2695|consensus

Probab=98.22  E-value=2.5e-06  Score=68.00  Aligned_cols=122  Identities=10%  Similarity=0.025  Sum_probs=88.9

Q ss_pred             cceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc------eeEeeccCCCeEEEEECC-CCCEEEEEcCCC
Q psy11524         72 LSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK------ATKWQAHDGLILKVAWCS-STDLILSGGEDC  144 (323)
Q Consensus        72 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~  144 (323)
                      ....+.+...+.|.++.|...+..+..|..+ |.|..+|+..+      .....-|...|+++.... ++.+|++.+.+|
T Consensus       243 tg~~qsf~sksDVfAlQf~~s~nLv~~GcRn-geI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~g  321 (425)
T KOG2695|consen  243 TGHQQSFQSKSDVFALQFAGSDNLVFNGCRN-GEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTG  321 (425)
T ss_pred             cccccccccchhHHHHHhcccCCeeEecccC-CcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcC
Confidence            3344556678899999999888888777666 69999987654      233446899999988877 778999999999


Q ss_pred             ceEeeeEEeCC-CCe---eeEeecCCCceeE--EEEecCCCEEEEEeCC-eEEEEeCCCC
Q psy11524        145 KYKASFVWDTD-GRQ---LYSSLTHDHPISS--LAWAPGGDMFAVGSYN-TLRLCDKVGW  197 (323)
Q Consensus       145 ~i~~i~v~d~~-~~~---~~~~~~~~~~v~~--~~~~p~~~~l~~~~~~-~i~i~d~~~~  197 (323)
                      +|+   +||++ .++   +.++.+|-..-.-  +-..+....++++++| ..+||.++..
T Consensus       322 kik---LyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g  378 (425)
T KOG2695|consen  322 KIK---LYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG  378 (425)
T ss_pred             cee---EeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence            999   99995 344   6666666432221  2234455677788888 9999999854

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.15  E-value=0.003  Score=54.51  Aligned_cols=184  Identities=17%  Similarity=0.177  Sum_probs=95.9

Q ss_pred             EEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEe-------ecCCCceeEEEEec
Q psy11524        105 VIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSS-------LTHDHPISSLAWAP  176 (323)
Q Consensus       105 ~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~-------~~~~~~v~~~~~~p  176 (323)
                      .|.+|+..+. +..+.-..+.+.++.|+.+. .|+....||.++   +||+.++....+       .-....+....+..
T Consensus        62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~---vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~  137 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVR---VYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYK  137 (410)
T ss_pred             EEEEECCCCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEE---EEeCCCceeechhhhccccCcccccccccccCC
Confidence            5888988877 33333333899999999865 455667899999   999976661111       11112222223333


Q ss_pred             CCCEEEEEeCCeEEEEe-CCCC-eeeecCCCCc---------cEE-EEEEcCCCCEEEEEecCc-EEEEEcCCCceeeee
Q psy11524        177 GGDMFAVGSYNTLRLCD-KVGW-SHSLDKPDTG---------SVY-DLVWSNDATQIAGACANV-IHIFDISSSSSSNVT  243 (323)
Q Consensus       177 ~~~~l~~~~~~~i~i~d-~~~~-~~~~~~~~~~---------~v~-~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~  243 (323)
                      +|-.+++. ...+++.. .... ..........         ... -..++.+....+....++ +.+.+....+.    
T Consensus       138 ~GivvLt~-~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----  212 (410)
T PF04841_consen  138 NGIVVLTG-NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ----  212 (410)
T ss_pred             CCEEEECC-CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc----
Confidence            55333332 23444333 3322 1111100000         000 123444444444444455 55444222211    


Q ss_pred             cCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCC-CccceeEEEEeeCC
Q psy11524        244 APLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKP-DTGSVYDLVWSSDA  303 (323)
Q Consensus       244 ~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~-~~~~v~~~~~s~~g  303 (323)
                        ....+++..++.||++    +.|++...+|.+.+....-.    .... -......+.|.-+.
T Consensus       213 --i~~~~~i~~iavSpng----~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  213 --IDSDGPIIKIAVSPNG----KFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             --ccCCCCeEEEEECCCC----CEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence              1134689999999999    89999988888766543321    0001 12455667776553

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.15  E-value=0.0016  Score=55.81  Aligned_cols=210  Identities=14%  Similarity=0.059  Sum_probs=108.3

Q ss_pred             CCCeEEEEeeCCeEEEEeCCCCceeEee-ccCCCeEE-EEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCc
Q psy11524         92 DSNKVLLTQAKSLVIKPLSPNNKATKWQ-AHDGLILK-VAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHP  168 (323)
Q Consensus        92 ~~~~l~~~~~~~~~v~~~~~~~~~~~~~-~~~~~v~~-~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~  168 (323)
                      ++..+++++.+ +.++.+|..+....+. ...+.+.+ ...  .+..++.++.++.+.   .+|.+ ++.+.........
T Consensus       104 ~~~~v~v~~~~-g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~---a~d~~tG~~~W~~~~~~~~  177 (377)
T TIGR03300       104 DGGLVFVGTEK-GEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLT---ALDAATGERLWTYSRVTPA  177 (377)
T ss_pred             cCCEEEEEcCC-CEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEE---EEEcCCCceeeEEccCCCc
Confidence            46667766555 6888888754422221 12222221 111  245677788899999   99985 6666655433221


Q ss_pred             e-----eEEEEecCCCEEEEEeC-CeEEEEeCCCCeeeecCC--CC--c----cEEEEEEcC--CCCEEEEEecCc-EEE
Q psy11524        169 I-----SSLAWAPGGDMFAVGSY-NTLRLCDKVGWSHSLDKP--DT--G----SVYDLVWSN--DATQIAGACANV-IHI  231 (323)
Q Consensus       169 v-----~~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~~~~~~--~~--~----~v~~~~~~~--~~~~l~~~~~d~-i~i  231 (323)
                      .     .+.... + ..++.+.. +.+..+|.++........  ..  .    ....+.-+|  .+..+++++.++ ++.
T Consensus       178 ~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a  255 (377)
T TIGR03300       178 LTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAA  255 (377)
T ss_pred             eeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEE
Confidence            1     111222 3 35666666 489999976443321110  00  0    000111111  345788888889 999


Q ss_pred             EEcCCCceeeeecCCCCccceEEEEEccCC-C----CccceEEEEeCCCCeEEEecccccCCCCccceeEEEEeeCCCee
Q psy11524        232 FDISSSSSSNVTAPLSHSHEITQLAVNQTG-S----LQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQI  306 (323)
Q Consensus       232 wd~~~~~~~~~~~~~~~~~~v~~~~~~p~g-~----~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  306 (323)
                      +|.++|+.+........    ..+..  .+ .    ..++.+...+......+|....    .......+...  .+..|
T Consensus       256 ~d~~tG~~~W~~~~~~~----~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~----~~~~~~ssp~i--~g~~l  323 (377)
T TIGR03300       256 LDLRSGRVLWKRDASSY----QGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDE----LKYRQLTAPAV--VGGYL  323 (377)
T ss_pred             EECCCCcEEEeeccCCc----cCceE--eCCEEEEECCCCeEEEEECCCCcEEEcccc----ccCCccccCEE--ECCEE
Confidence            99999987775321111    11111  12 0    1123444444444444454322    00111222222  45688


Q ss_pred             EeeecCCeEEEEEee
Q psy11524        307 AGACANGSLLLGTII  321 (323)
Q Consensus       307 ~s~~~dg~i~~~~l~  321 (323)
                      ++++.+|.+++++..
T Consensus       324 ~~~~~~G~l~~~d~~  338 (377)
T TIGR03300       324 VVGDFEGYLHWLSRE  338 (377)
T ss_pred             EEEeCCCEEEEEECC
Confidence            889999999988753

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG3617|consensus

Probab=98.03  E-value=3.3e-05  Score=68.98  Aligned_cols=132  Identities=14%  Similarity=0.194  Sum_probs=91.6

Q ss_pred             EEEEECCCCCEEEEEcC----CCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCC-ee
Q psy11524        126 LKVAWCSSTDLILSGGE----DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGW-SH  199 (323)
Q Consensus       126 ~~~~~~~~~~~l~~~~~----d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~-~~  199 (323)
                      +-..|+|...++++++-    .|.|.   ||--+|++-...+ .+-.+++++|+|..-.|+.|-. +.+.+|..... ..
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVt---IfadtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h   94 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVT---IFADTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH   94 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEE---EEecCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence            44679998888887763    57888   8866666444333 3345678999998766777766 58999997754 44


Q ss_pred             eecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCc--c--ceEEEEEccCC
Q psy11524        200 SLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHS--H--EITQLAVNQTG  261 (323)
Q Consensus       200 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~--~--~v~~~~~~p~g  261 (323)
                      .....|+.++..+.|||+|..++++..-| +.+|....-..++...+..|.  .  ...+...++++
T Consensus        95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~  161 (1416)
T KOG3617|consen   95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDR  161 (1416)
T ss_pred             eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCCh
Confidence            56677999999999999999999999999 999976532222221122221  1  34455667775

>KOG3621|consensus

Probab=98.02  E-value=5.8e-05  Score=66.02  Aligned_cols=112  Identities=12%  Similarity=0.080  Sum_probs=85.0

Q ss_pred             CCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecc
Q psy11524        205 DTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWS  283 (323)
Q Consensus       205 ~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~  283 (323)
                      +...+.--+++..+++++.|+.-| +++|+...++.... +..+..+.+.....+++.    .+++.+...+.+.++.+.
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-~~~~~~~~~~~~~vs~~e----~lvAagt~~g~V~v~ql~  106 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-KNEGATGITCVRSVSSVE----YLVAAGTASGRVSVFQLN  106 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-cccCccceEEEEEecchh----HhhhhhcCCceEEeehhh
Confidence            444566667778899999999999 99999766655442 133344556667778876    788888888888877665


Q ss_pred             cc----------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        284 HS----------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       284 ~~----------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      ..          ..+.|...|++++|++++..|++|...|+|..-.|.
T Consensus       107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~  154 (726)
T KOG3621|consen  107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD  154 (726)
T ss_pred             ccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence            53          233467899999999999999999999999887663

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.00  E-value=0.0064  Score=50.84  Aligned_cols=220  Identities=13%  Similarity=0.036  Sum_probs=102.3

Q ss_pred             CEEEEEEcCCCCeEEEEeeCC--eEEEEeCCCCc-eeEeeccCC-CeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCe
Q psy11524         83 PVYSAAWSPDSNKVLLTQAKS--LVIKPLSPNNK-ATKWQAHDG-LILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQ  158 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~~~--~~v~~~~~~~~-~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~  158 (323)
                      ..+.-+|.+||+.|+++++.+  ..++..|+.+. +.+++...+ ......++|+++.++.......+.   ..|+++.+
T Consensus        37 YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~---~vdL~T~e  113 (386)
T PF14583_consen   37 YFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLR---RVDLDTLE  113 (386)
T ss_dssp             -TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEE---EEETTT--
T ss_pred             eecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEE---EEECCcCc
Confidence            344456789999998887532  46888888877 566665442 223566788888877665556777   88886554


Q ss_pred             eeEee-cCCCceeEEEEe--cCCCEEEEEe---------------------C-C-eEEEEeCCCCeeeecCCCCccEEEE
Q psy11524        159 LYSSL-THDHPISSLAWA--PGGDMFAVGS---------------------Y-N-TLRLCDKVGWSHSLDKPDTGSVYDL  212 (323)
Q Consensus       159 ~~~~~-~~~~~v~~~~~~--p~~~~l~~~~---------------------~-~-~i~i~d~~~~~~~~~~~~~~~v~~~  212 (323)
                      ...+. ..+.-+-...|.  .|+..++..-                     . . .|.-.|+.+...........++..+
T Consensus       114 ~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~  193 (386)
T PF14583_consen  114 ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHV  193 (386)
T ss_dssp             EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEE
T ss_pred             EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCc
Confidence            44333 333333345554  3566554321                     1 1 3555566665555554466788999


Q ss_pred             EEcCC-CCEEEEEecCc---E--EEEEcCC-CceeeeecCCCCccceEEEEEccCCC----------CccceEEEEeCCC
Q psy11524        213 VWSND-ATQIAGACANV---I--HIFDISS-SSSSNVTAPLSHSHEITQLAVNQTGS----------LQERHVAFIDKNR  275 (323)
Q Consensus       213 ~~~~~-~~~l~~~~~d~---i--~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~p~g~----------~~d~~l~~~~~~~  275 (323)
                      .|+|. ...|+.|.+..   |  +||-+++ +.....+.-......+.-=-|.|+|.          ..+..|+..+.+.
T Consensus       194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t  273 (386)
T PF14583_consen  194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT  273 (386)
T ss_dssp             EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT
T ss_pred             ccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC
Confidence            99994 44555555432   2  6664432 22222210122234455567888884          2233334344333


Q ss_pred             CeEEEecccccCCCCccceeEEEEeeCCCeeEeeecC
Q psy11524        276 DLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACAN  312 (323)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d  312 (323)
                      ....+- ..      ......+--++||+++|.=+.|
T Consensus       274 ~~~~~~-~~------~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  274 GERRRL-ME------MPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             --EEEE-EE------E-SEEEEEE-TTSSEEEEEE--
T ss_pred             CCceEE-Ee------CCceeeeEEcCCCCEEEecCCC
Confidence            221111 00      1234455667888877744444

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.97  E-value=0.0018  Score=58.35  Aligned_cols=183  Identities=13%  Similarity=0.042  Sum_probs=104.5

Q ss_pred             CCeEEEEECCCCCEEEEEc------CCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeCC--eEEEE--
Q psy11524        123 GLILKVAWCSSTDLILSGG------EDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN--TLRLC--  192 (323)
Q Consensus       123 ~~v~~~~~~~~~~~l~~~~------~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~--~i~i~--  192 (323)
                      ..+.+++++|||+.++...      .|. -..||+++..+.. ..+... .......|+|||..+++..++  .+++.  
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~-~s~Lwv~~~gg~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDP-ASSLWVGPLGGVA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCc-ceEEEEEeCCCcc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEecc
Confidence            4577899999999887765      232 2244477764443 333322 237889999999888777653  23333  


Q ss_pred             ---------eCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCcEEE---EEcCCCceee-e-ecC-CCCccceEEEEE
Q psy11524        193 ---------DKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANVIHI---FDISSSSSSN-V-TAP-LSHSHEITQLAV  257 (323)
Q Consensus       193 ---------d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~i~i---wd~~~~~~~~-~-~~~-~~~~~~v~~~~~  257 (323)
                               ++.+.....  ...+.|..+.|||||+.++......|++   -....|+..- . ..+ ......+.++.|
T Consensus       427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W  504 (591)
T PRK13616        427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW  504 (591)
T ss_pred             CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence                     332221111  2355799999999999998877432666   4444454111 0 001 223334678999


Q ss_pred             ccCCCCccceEEEEeCCCCeEEEecccc--c--C-CC--CccceeEEEEeeCCCeeEeeecCCeEEE
Q psy11524        258 NQTGSLQERHVAFIDKNRDLYLSMWSHS--L--D-KP--DTGSVYDLVWSSDATQIAGACANGSLLL  317 (323)
Q Consensus       258 ~p~g~~~d~~l~~~~~~~~~~~~~~~~~--~--~-~~--~~~~v~~~~~s~~g~~l~s~~~dg~i~~  317 (323)
                      .+++    . |.+....+...+|.+.-.  .  . ..  ....+.+++=+++  .|+....+|.+.+
T Consensus       505 ~~~~----~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l  564 (591)
T PRK13616        505 RTGD----S-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL  564 (591)
T ss_pred             ecCC----E-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence            9986    4 556555555555554331  1  1 11  1345666666653  4666666665443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.92  E-value=0.0011  Score=57.44  Aligned_cols=144  Identities=19%  Similarity=0.277  Sum_probs=91.5

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCC----CEEEEEcCCCceEeeeEEeC
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSST----DLILSGGEDCKYKASFVWDT  154 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~~i~v~d~  154 (323)
                      -.++..++|. ||+.++.+.     +++-+-+.+  -....+.-..|..+.|.|-+    ..+++......|.   ||.+
T Consensus        19 iHPvhGlaWT-DGkqVvLT~-----L~l~~gE~kfGds~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVt---VWqL   89 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTD-----LQLHNGEPKFGDSKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVT---VWQL   89 (671)
T ss_pred             hccccceEec-CCCEEEEEe-----eeeeCCccccCCccEeeccceeeeeeecCcccCCCCceEEEeccceEE---EEEe
Confidence            4688899997 566655432     222221111  11223444568899999852    2455556677788   9998


Q ss_pred             C------CCeeeEeec-----CCCceeEEEEecCCCEEEEEeC-CeEEEEeCC--CCeeeecCCCCccEEEEEEcCCCCE
Q psy11524        155 D------GRQLYSSLT-----HDHPISSLAWAPGGDMFAVGSY-NTLRLCDKV--GWSHSLDKPDTGSVYDLVWSNDATQ  220 (323)
Q Consensus       155 ~------~~~~~~~~~-----~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~--~~~~~~~~~~~~~v~~~~~~~~~~~  220 (323)
                      .      ++.+..-..     ..--...+.|+|....|++-.. |.-.+++++  +..++......+.|.|.+|.+||+.
T Consensus        90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~R  169 (671)
T PF15390_consen   90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQR  169 (671)
T ss_pred             ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCE
Confidence            3      222222211     1112356789999999888777 544456654  4455554557788999999999999


Q ss_pred             EEEEecCc--EEEEE
Q psy11524        221 IAGACANV--IHIFD  233 (323)
Q Consensus       221 l~~~~~d~--i~iwd  233 (323)
                      |+++-...  -++||
T Consensus       170 LVVAvGSsLHSyiWd  184 (671)
T PF15390_consen  170 LVVAVGSSLHSYIWD  184 (671)
T ss_pred             EEEEeCCeEEEEEec
Confidence            98887766  88998

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.92  E-value=0.001  Score=57.54  Aligned_cols=214  Identities=11%  Similarity=0.102  Sum_probs=106.0

Q ss_pred             ccceeEeeEeccCCcceeeeeeccccccccceeeecC----CCCCEEEEEEcCCCCeEEEEeeCCeEEEEe-CCCCce-e
Q psy11524         43 YDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLN----VSPPVYSAAWSPDSNKVLLTQAKSLVIKPL-SPNNKA-T  116 (323)
Q Consensus        43 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~-~~~~~~-~  116 (323)
                      ..-...++.++|+|+.++. ..+|.|    .+...+.    ..+.-...+|.+.+++ |+-... ..|.++ +..... .
T Consensus        31 ~~~~p~~ls~npngr~v~V-~g~geY----~iyt~~~~r~k~~G~g~~~vw~~~n~y-Av~~~~-~~I~I~kn~~~~~~k  103 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLV-CGDGEY----EIYTALAWRNKAFGSGLSFVWSSRNRY-AVLESS-STIKIYKNFKNEVVK  103 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEE-EETTEE----EEEETTTTEEEEEEE-SEEEE-TSSEE-EEE-TT-S-EEEEETTEE-TT-
T ss_pred             CCcCCeeEEECCCCCEEEE-EcCCEE----EEEEccCCcccccCceeEEEEecCccE-EEEECC-CeEEEEEcCccccce
Confidence            3444678999999976654 333322    2222221    2345566889886654 444333 467775 332221 2


Q ss_pred             EeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCC
Q psy11524        117 KWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKV  195 (323)
Q Consensus       117 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~  195 (323)
                      .++. +..+..+-.   |.+|+..+.+ .|.   +||.+ ++.+..+...  +|..+.|+++|++++..+.+.+++++..
T Consensus       104 ~i~~-~~~~~~If~---G~LL~~~~~~-~i~---~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~  173 (443)
T PF04053_consen  104 SIKL-PFSVEKIFG---GNLLGVKSSD-FIC---FYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYN  173 (443)
T ss_dssp             -----SS-EEEEE----SSSEEEEETT-EEE---EE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-
T ss_pred             EEcC-CcccceEEc---CcEEEEECCC-CEE---EEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEec
Confidence            3321 223444432   7777776644 788   99996 5566666533  3899999999999999998878877754


Q ss_pred             CC------------eeeecCCCCccEEEEEEcCCCCEEEEEecCcEEEEEcCCCceeeeecCCCCccceEEEEEccCCCC
Q psy11524        196 GW------------SHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSL  263 (323)
Q Consensus       196 ~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~  263 (323)
                      ..            ...........|.+.+|..+  .++-.+...|+.  +-.|+.-.   +.....++.=+...|..  
T Consensus       174 ~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~~lkY--l~~Ge~~~---i~~ld~~~yllgy~~~~--  244 (443)
T PF04053_consen  174 LEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSNHLKY--LVNGETGI---IAHLDKPLYLLGYLPKE--  244 (443)
T ss_dssp             HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TTEEEE--EETTEEEE---EEE-SS--EEEEEETTT--
T ss_pred             chhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCCeEEE--EEcCCcce---EEEcCCceEEEEEEccC--
Confidence            33            33333333567888899876  344333335544  23343222   12234466667777765  


Q ss_pred             ccceEEEEeCCCCeEEEeccc
Q psy11524        264 QERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       264 ~d~~l~~~~~~~~~~~~~~~~  284 (323)
                        +.+.+.|.+..+..+.+..
T Consensus       245 --~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  245 --NRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             --TEEEEE-TT--EEEEE--H
T ss_pred             --CEEEEEECCCCEEEEEECH
Confidence              7888889888887776654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.91  E-value=0.0075  Score=52.48  Aligned_cols=154  Identities=13%  Similarity=0.110  Sum_probs=84.6

Q ss_pred             EEEEEEcCCCCeEEEEee----CCeEEEEeCCCCceeEeeccCC-CeEEEEECCCCCEEEEEcCCC--c------eEeee
Q psy11524         84 VYSAAWSPDSNKVLLTQA----KSLVIKPLSPNNKATKWQAHDG-LILKVAWCSSTDLILSGGEDC--K------YKASF  150 (323)
Q Consensus        84 v~~~~~sp~~~~l~~~~~----~~~~v~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~--~------i~~i~  150 (323)
                      +...++||+|+++|.+-+    +...+++.|+.++...-..... ....+.|.+|++.|+....+.  .      -..|+
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            346789999999998743    3356999999776221111111 112399999988776665433  2      33455


Q ss_pred             EEeCCCCe---eeEeecCCCc--eeEEEEecCCCEEEEEeC-C----eEEEEeCCCC-----eeeecCCCCccE-EEEEE
Q psy11524        151 VWDTDGRQ---LYSSLTHDHP--ISSLAWAPGGDMFAVGSY-N----TLRLCDKVGW-----SHSLDKPDTGSV-YDLVW  214 (323)
Q Consensus       151 v~d~~~~~---~~~~~~~~~~--v~~~~~~p~~~~l~~~~~-~----~i~i~d~~~~-----~~~~~~~~~~~v-~~~~~  214 (323)
                      .|.+....   ...+......  ...+..++|+++++.... +    .+++.|+...     ....+......+ ..+..
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~  285 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH  285 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence            88884221   2333333332  567889999999775443 2    4778887652     333333233333 33433


Q ss_pred             cCCCCEEEEEecC---c-EEEEEcCCCc
Q psy11524        215 SNDATQIAGACAN---V-IHIFDISSSS  238 (323)
Q Consensus       215 ~~~~~~l~~~~~d---~-i~iwd~~~~~  238 (323)
                      . .+.+++....+   + |.-.++....
T Consensus       286 ~-~~~~yi~Tn~~a~~~~l~~~~l~~~~  312 (414)
T PF02897_consen  286 H-GDRLYILTNDDAPNGRLVAVDLADPS  312 (414)
T ss_dssp             E-TTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred             c-CCEEEEeeCCCCCCcEEEEecccccc
Confidence            3 44444433332   3 5556666654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1008|consensus

Probab=97.90  E-value=6.8e-06  Score=70.87  Aligned_cols=153  Identities=16%  Similarity=0.210  Sum_probs=105.1

Q ss_pred             CCCCEEEEEEcCC-CCeEEEEe---eCCeEEEEeCCCCcee------Eeec-cCCCeEEEEECCCCCEEEEEcCCCceEe
Q psy11524         80 VSPPVYSAAWSPD-SNKVLLTQ---AKSLVIKPLSPNNKAT------KWQA-HDGLILKVAWCSSTDLILSGGEDCKYKA  148 (323)
Q Consensus        80 ~~~~v~~~~~sp~-~~~l~~~~---~~~~~v~~~~~~~~~~------~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~  148 (323)
                      +..++++++|++- ...||+|-   ..+..+.+||......      .+.. -.....+++|..+.+++++|.....+. 
T Consensus       101 ~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~-  179 (783)
T KOG1008|consen  101 YARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVH-  179 (783)
T ss_pred             ccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhh-
Confidence            6789999999994 45565552   2234689999876511      1222 233456889998889999999998999 


Q ss_pred             eeEEeCCCCeeeEeecCCCceeEEEEec-CCCEEEEEeCCeEEEEe-CCCC--eeeecC----CCCccEEEEEEcCCC-C
Q psy11524        149 SFVWDTDGRQLYSSLTHDHPISSLAWAP-GGDMFAVGSYNTLRLCD-KVGW--SHSLDK----PDTGSVYDLVWSNDA-T  219 (323)
Q Consensus       149 i~v~d~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~~~i~i~d-~~~~--~~~~~~----~~~~~v~~~~~~~~~-~  219 (323)
                        ++|++......-.-.+..+..+..+| .+.++++-.++.|.+|| .+.-  .+....    .....+..++|.|.. .
T Consensus       180 --ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg  257 (783)
T KOG1008|consen  180 --IFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG  257 (783)
T ss_pred             --hhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc
Confidence              99997544444333455677888888 78899888877999999 4321  222221    122358999999943 2


Q ss_pred             EEEEEecCc--EEEEEcC
Q psy11524        220 QIAGACANV--IHIFDIS  235 (323)
Q Consensus       220 ~l~~~~~d~--i~iwd~~  235 (323)
                      .+++...|.  |+++|+.
T Consensus       258 lla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  258 LLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             hhhhhccCcceEEEeccc
Confidence            567777776  9999875

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.90  E-value=0.012  Score=50.49  Aligned_cols=231  Identities=13%  Similarity=0.098  Sum_probs=137.6

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEe-eccC-CCeEEEEECCCCCEEE-EEcCCCceEeeeEEeCCCC
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKW-QAHD-GLILKVAWCSSTDLIL-SGGEDCKYKASFVWDTDGR  157 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~-~~~~-~~v~~~~~~~~~~~l~-~~~~d~~i~~i~v~d~~~~  157 (323)
                      ......+...|++..+.+.......+...+........ ..-. .....++.+++++.++ +...++.|.   +.|....
T Consensus        30 ~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~---vid~~~~  106 (381)
T COG3391          30 GRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVS---VIDTATN  106 (381)
T ss_pred             CCCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEE---EEcCccc
Confidence            34677788888887776665443345555444221111 1111 3345778888887554 444568899   9997654


Q ss_pred             eeeEeecCCCceeEEEEecCCCEEEEEeC---C-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEe-cCc-EEE
Q psy11524        158 QLYSSLTHDHPISSLAWAPGGDMFAVGSY---N-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGAC-ANV-IHI  231 (323)
Q Consensus       158 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~-i~i  231 (323)
                      .......-......++++|+++.+.++..   + ++.+.|..+..+.....-......++++|+|+.++... .++ |.+
T Consensus       107 ~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~v  186 (381)
T COG3391         107 TVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSV  186 (381)
T ss_pred             ceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEE
Confidence            44444333446788999999988776665   3 88888876543332222222238999999999777766 455 999


Q ss_pred             EEcCCCceee-ee-cCCCCccceEEEEEccCCCCccceEEEEeCCC---CeEEEeccccc-----CCCCcc-ceeEEEEe
Q psy11524        232 FDISSSSSSN-VT-APLSHSHEITQLAVNQTGSLQERHVAFIDKNR---DLYLSMWSHSL-----DKPDTG-SVYDLVWS  300 (323)
Q Consensus       232 wd~~~~~~~~-~~-~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~---~~~~~~~~~~~-----~~~~~~-~v~~~~~s  300 (323)
                      .|........ .. ...........+.++|+|    ..+.+.+...   .+...+.....     ... .. ....+..+
T Consensus       187 i~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g----~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-~~~~~~~v~~~  261 (381)
T COG3391         187 IDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDG----NRVYVANDGSGSNNVLKIDTATGNVTATDLPV-GSGAPRGVAVD  261 (381)
T ss_pred             EeCCCcceeccccccccccCCCCceEEECCCC----CEEEEEeccCCCceEEEEeCCCceEEEecccc-ccCCCCceeEC
Confidence            9976655542 10 002223345678899998    5555544433   45555544430     011 11 35568899


Q ss_pred             eCCCeeEeeecC-CeEEEEE
Q psy11524        301 SDATQIAGACAN-GSLLLGT  319 (323)
Q Consensus       301 ~~g~~l~s~~~d-g~i~~~~  319 (323)
                      |+|+.+...... +.+.+-+
T Consensus       262 p~g~~~yv~~~~~~~V~vid  281 (381)
T COG3391         262 PAGKAAYVANSQGGTVSVID  281 (381)
T ss_pred             CCCCEEEEEecCCCeEEEEe
Confidence            999988776433 5555443

>KOG1645|consensus

Probab=97.89  E-value=0.0017  Score=53.36  Aligned_cols=140  Identities=15%  Similarity=0.157  Sum_probs=86.6

Q ss_pred             CCCCEEEEEEcCCCCe-EEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCC-CEEEEEcCCCceEeeeEEeCC
Q psy11524         80 VSPPVYSAAWSPDSNK-VLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSST-DLILSGGEDCKYKASFVWDTD  155 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~-l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~i~v~d~~  155 (323)
                      +...|..++|||...- +..++-+ ..|.+.|+...  ...+..+ ..+++++|.-|. ++++.|...|.|.   +||++
T Consensus       192 ~g~~IrdlafSp~~~GLl~~asl~-nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl---vyD~R  266 (463)
T KOG1645|consen  192 EGSFIRDLAFSPFNEGLLGLASLG-NKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL---VYDMR  266 (463)
T ss_pred             cchhhhhhccCccccceeeeeccC-ceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEE---EEEcc
Confidence            6788999999998884 4445444 58999998876  4455555 889999998765 5788888899999   99995


Q ss_pred             --CCeeeEeec--CCCceeEEEEecCCC-----EEEEEeCCeEEEEeCCC----CeeeecCCCCccEEEEEEcCCCCEEE
Q psy11524        156 --GRQLYSSLT--HDHPISSLAWAPGGD-----MFAVGSYNTLRLCDKVG----WSHSLDKPDTGSVYDLVWSNDATQIA  222 (323)
Q Consensus       156 --~~~~~~~~~--~~~~v~~~~~~p~~~-----~l~~~~~~~i~i~d~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~  222 (323)
                        ...+..+.+  ...+|..++.-+-+.     -++++..-.+..|....    .......+..+.+.+++..+-.+.++
T Consensus       267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l  346 (463)
T KOG1645|consen  267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLL  346 (463)
T ss_pred             CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCccceEE
Confidence              233333322  233455544332211     13333332345566432    22223333456677777777555554


Q ss_pred             EE
Q psy11524        223 GA  224 (323)
Q Consensus       223 ~~  224 (323)
                      ..
T Consensus       347 ~t  348 (463)
T KOG1645|consen  347 LT  348 (463)
T ss_pred             EE
Confidence            43

>KOG1645|consensus

Probab=97.88  E-value=0.00065  Score=55.77  Aligned_cols=78  Identities=17%  Similarity=0.130  Sum_probs=60.7

Q ss_pred             EeeccCCCeEEEEECCCCC-EEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC-C-eEEEEe
Q psy11524        117 KWQAHDGLILKVAWCSSTD-LILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-N-TLRLCD  193 (323)
Q Consensus       117 ~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d  193 (323)
                      -+..+...|.+++|+|..+ ++..++.+.+|+   |.|++...+.........+++++|.-|...++.++. + .|.+||
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkik---i~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD  264 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIK---IMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYD  264 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEE---EEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEE
Confidence            3456677899999999766 788899999999   999976555443333488999999998776666665 4 999999


Q ss_pred             CCCC
Q psy11524        194 KVGW  197 (323)
Q Consensus       194 ~~~~  197 (323)
                      ++..
T Consensus       265 ~R~~  268 (463)
T KOG1645|consen  265 MRQP  268 (463)
T ss_pred             ccCC
Confidence            8743

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.88  E-value=0.01  Score=48.88  Aligned_cols=189  Identities=11%  Similarity=-0.018  Sum_probs=112.6

Q ss_pred             eeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEeec-----cCCCeEEEEECCCCCEEEEEcC-------
Q psy11524         75 CRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQA-----HDGLILKVAWCSSTDLILSGGE-------  142 (323)
Q Consensus        75 ~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~-------  142 (323)
                      .+.+.+.+.+.++..-..+..|+++. ....+...+.......+..     .....+.+...|+|.+.++...       
T Consensus        59 ~~~~~~p~~~~~~~~~d~~g~Lv~~~-~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~  137 (307)
T COG3386          59 KRVFPSPGGFSSGALIDAGGRLIACE-HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKS  137 (307)
T ss_pred             eEEEECCCCcccceeecCCCeEEEEc-cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCcc
Confidence            34455566666666555555666543 3222222222222122211     1235567888899887665443       


Q ss_pred             ----CCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC--CeEEEEeCCC-------Ce-eeecCCCCcc
Q psy11524        143 ----DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY--NTLRLCDKVG-------WS-HSLDKPDTGS  208 (323)
Q Consensus       143 ----d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--~~i~i~d~~~-------~~-~~~~~~~~~~  208 (323)
                          -|.++   .++..+.....+..+-...+.++||||++.++.+..  +.|+-|++..       .. ........+.
T Consensus       138 ~~~~~G~ly---r~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~  214 (307)
T COG3386         138 EERPTGSLY---RVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGL  214 (307)
T ss_pred             ccCCcceEE---EEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCC
Confidence                13233   666556666666665667789999999998888877  3787777541       11 1222234566


Q ss_pred             EEEEEEcCCCCEEEEEecCc--EEEEEcCCCceeeeecCCCCccceEEEEEc-cCCCCccceEEEEeCC
Q psy11524        209 VYDLVWSNDATQIAGACANV--IHIFDISSSSSSNVTAPLSHSHEITQLAVN-QTGSLQERHVAFIDKN  274 (323)
Q Consensus       209 v~~~~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-p~g~~~d~~l~~~~~~  274 (323)
                      .-.++...+|.+-+++..++  |..|+.. |+.+..+  .-....+++++|- |+.    +.|.+-+..
T Consensus       215 PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i--~lP~~~~t~~~FgG~~~----~~L~iTs~~  276 (307)
T COG3386         215 PDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEI--KLPVKRPTNPAFGGPDL----NTLYITSAR  276 (307)
T ss_pred             CCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEE--ECCCCCCccceEeCCCc----CEEEEEecC
Confidence            77888888998775555553  9999977 8888874  3333667777774 444    566655443

>KOG4640|consensus

Probab=97.77  E-value=0.00022  Score=61.76  Aligned_cols=93  Identities=16%  Similarity=0.153  Sum_probs=73.3

Q ss_pred             CCceeEEEEecCCCEEEEEeC-CeEEEEeCCCCeeeecCCCCccEE-EEEEcCCCCEEEEEecCc-EEEEEcCCCceeee
Q psy11524        166 DHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGWSHSLDKPDTGSVY-DLVWSNDATQIAGACANV-IHIFDISSSSSSNV  242 (323)
Q Consensus       166 ~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~  242 (323)
                      ...+.-+.|+|.-.++|.+.. +.+.+..+.-+.+..+..+...++ +++|.|||+.|++|-.|| |++-|++++..+..
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            345778899999999999998 588888888555555554555666 999999999999999999 99999999887765


Q ss_pred             ecCCCCccceEEEEEcc
Q psy11524        243 TAPLSHSHEITQLAVNQ  259 (323)
Q Consensus       243 ~~~~~~~~~v~~~~~~p  259 (323)
                      . .......|.++-|.|
T Consensus       100 ~-~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 F-LFSVETDISKGIWDR  115 (665)
T ss_pred             c-ccccccchheeeccc
Confidence            2 233455777777764

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.76  E-value=0.015  Score=47.46  Aligned_cols=144  Identities=12%  Similarity=0.102  Sum_probs=85.2

Q ss_pred             CCCCeEEEEeeCCeEEEEeCCCC-ceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC---Ceee------
Q psy11524         91 PDSNKVLLTQAKSLVIKPLSPNN-KATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG---RQLY------  160 (323)
Q Consensus        91 p~~~~l~~~~~~~~~v~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~---~~~~------  160 (323)
                      ..++.|+.|.++ | +++++... .......+...|..+...|+-+.+++-+ |+.+.   ++++..   ....      
T Consensus         5 ~~~~~L~vGt~~-G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~---~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    5 SWGDRLLVGTED-G-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLY---VYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             cCCCEEEEEECC-C-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccE---EEEchhhcccccccccccc
Confidence            457888888665 5 77777622 2122222333499999999877766655 58899   999831   1100      


Q ss_pred             ------EeecCCCceeEEE---EecCCCEEEEEeCCeEEEEeCCCC-----eeeecCCCCccEEEEEEcCCCCEEEEEec
Q psy11524        161 ------SSLTHDHPISSLA---WAPGGDMFAVGSYNTLRLCDKVGW-----SHSLDKPDTGSVYDLVWSNDATQIAGACA  226 (323)
Q Consensus       161 ------~~~~~~~~v~~~~---~~p~~~~l~~~~~~~i~i~d~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  226 (323)
                            ........+..++   -......++++....|.+|.....     ...........+..++|.  ++.++.+..
T Consensus        79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~  156 (275)
T PF00780_consen   79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTS  156 (275)
T ss_pred             ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeC
Confidence                  0111223444444   112344566666667777765421     122222245788999998  457888877


Q ss_pred             CcEEEEEcCCCceeee
Q psy11524        227 NVIHIFDISSSSSSNV  242 (323)
Q Consensus       227 d~i~iwd~~~~~~~~~  242 (323)
                      ++..+.|+.++.....
T Consensus       157 ~~f~~idl~~~~~~~l  172 (275)
T PF00780_consen  157 KGFYLIDLNTGSPSEL  172 (275)
T ss_pred             CceEEEecCCCCceEE
Confidence            7688999987766543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.73  E-value=0.018  Score=47.33  Aligned_cols=229  Identities=11%  Similarity=0.051  Sum_probs=116.7

Q ss_pred             CCEEEEEEcCCCCeEEEEee---------CCeEEEEeCCCCc----eeEeecc-CC----CeEEEEECCCCCEEEEEcC-
Q psy11524         82 PPVYSAAWSPDSNKVLLTQA---------KSLVIKPLSPNNK----ATKWQAH-DG----LILKVAWCSSTDLILSGGE-  142 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~---------~~~~v~~~~~~~~----~~~~~~~-~~----~v~~~~~~~~~~~l~~~~~-  142 (323)
                      +..-.+..+|+++.++++..         ..-.|.+||..+-    ...++.. ..    .....+++.||++++...- 
T Consensus        36 g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T  115 (342)
T PF06433_consen   36 GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT  115 (342)
T ss_dssp             ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES
T ss_pred             ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccC
Confidence            34455778999999987641         1236899998765    2223321 11    1234677888888776543 


Q ss_pred             -CCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCC--CCeee----ecCCCCcc-EEEEE
Q psy11524        143 -DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKV--GWSHS----LDKPDTGS-VYDLV  213 (323)
Q Consensus       143 -d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~--~~~~~----~~~~~~~~-v~~~~  213 (323)
                       -..|.   |.|+..+.........+. ..+-=+++. -|.+-+. |.+.-..+.  ++...    .+.....+ +..-+
T Consensus       116 Pa~SVt---VVDl~~~kvv~ei~~PGC-~~iyP~~~~-~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~  190 (342)
T PF06433_consen  116 PATSVT---VVDLAAKKVVGEIDTPGC-WLIYPSGNR-GFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPA  190 (342)
T ss_dssp             SSEEEE---EEETTTTEEEEEEEGTSE-EEEEEEETT-EEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--E
T ss_pred             CCCeEE---EEECCCCceeeeecCCCE-EEEEecCCC-ceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccc
Confidence             45677   889876655443333332 222212223 3444444 566655554  43222    22222222 33555


Q ss_pred             EcCCCCEEEEEecCc-EEEEEcCCCceee--eecCCC--------CccceEEEEEccCCC---------------Cccce
Q psy11524        214 WSNDATQIAGACANV-IHIFDISSSSSSN--VTAPLS--------HSHEITQLAVNQTGS---------------LQERH  267 (323)
Q Consensus       214 ~~~~~~~l~~~~~d~-i~iwd~~~~~~~~--~~~~~~--------~~~~v~~~~~~p~g~---------------~~d~~  267 (323)
                      +...+..++-.+..| |+--|+.......  ...+..        ..+.-.-+++++...               .....
T Consensus       191 ~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgte  270 (342)
T PF06433_consen  191 YSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTE  270 (342)
T ss_dssp             EETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEE
T ss_pred             eECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceE
Confidence            665555666677788 8888876554221  110110        001122345554331               11123


Q ss_pred             EEEEeCCCCeEEEecccccCCCCccceeEEEEeeCCC-eeEee-ecCCeEEEEEee
Q psy11524        268 VAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDAT-QIAGA-CANGSLLLGTII  321 (323)
Q Consensus       268 l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~-~~dg~i~~~~l~  321 (323)
                      |.++|.....++..+.-      ..++.+++.+.+.+ +|++. ..++.+.+||..
T Consensus       271 VWv~D~~t~krv~Ri~l------~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~  320 (342)
T PF06433_consen  271 VWVYDLKTHKRVARIPL------EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA  320 (342)
T ss_dssp             EEEEETTTTEEEEEEEE------EEEESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred             EEEEECCCCeEEEEEeC------CCccceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence            33334444433333332      56788999999876 66554 457999999853

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.71  E-value=0.02  Score=47.19  Aligned_cols=145  Identities=18%  Similarity=0.185  Sum_probs=90.0

Q ss_pred             EEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEe
Q psy11524         85 YSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSS  162 (323)
Q Consensus        85 ~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~  162 (323)
                      .+..|.|+...|+.+.-.++.|+-|+.... ...+ .+.+.+.++....++..|+++...  +.   +++.+ +.....+
T Consensus        28 EgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~-~~p~~~~~~~~~d~~g~Lv~~~~g--~~---~~~~~~~~~~t~~  101 (307)
T COG3386          28 EGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVF-PSPGGFSSGALIDAGGRLIACEHG--VR---LLDPDTGGKITLL  101 (307)
T ss_pred             cCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEE-ECCCCcccceeecCCCeEEEEccc--cE---EEeccCCceeEEe
Confidence            345678888888877766678999988755 4444 344444555444445555555332  44   56654 2221222


Q ss_pred             ec-----CCCceeEEEEecCCCEEEEEeC------------CeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEe
Q psy11524        163 LT-----HDHPISSLAWAPGGDMFAVGSY------------NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGAC  225 (323)
Q Consensus       163 ~~-----~~~~v~~~~~~p~~~~l~~~~~------------~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  225 (323)
                      ..     .....+.+...|+|.+.++...            +.++.+|..+........+-...+.++||||++.|+.+.
T Consensus       102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aD  181 (307)
T COG3386         102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD  181 (307)
T ss_pred             ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEe
Confidence            11     1235678888999987654332            136666655556666665566678999999998888776


Q ss_pred             cC-c-EEEEEcC
Q psy11524        226 AN-V-IHIFDIS  235 (323)
Q Consensus       226 ~d-~-i~iwd~~  235 (323)
                      .. + |+-|++.
T Consensus       182 T~~~~i~r~~~d  193 (307)
T COG3386         182 TPANRIHRYDLD  193 (307)
T ss_pred             CCCCeEEEEecC
Confidence            65 4 8877765

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.65  E-value=0.014  Score=46.85  Aligned_cols=141  Identities=21%  Similarity=0.238  Sum_probs=86.0

Q ss_pred             ceeEEEEecCCCEEEEEe--CC--eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEE-cCCCceee
Q psy11524        168 PISSLAWAPGGDMFAVGS--YN--TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFD-ISSSSSSN  241 (323)
Q Consensus       168 ~v~~~~~~p~~~~l~~~~--~~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd-~~~~~~~~  241 (323)
                      .+.+.+++++++.++...  .+  .++++...+.......  ...+....|++++...+....+. .+++. ..++....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            688999999999888777  43  7777776654444332  23788899999987666666555 66663 33333222


Q ss_pred             e-ecCCCCccceEEEEEccCCCCccceEEEEe-C--CCCeEEEecccc-------------cCCCCccceeEEEEeeCCC
Q psy11524        242 V-TAPLSHSHEITQLAVNQTGSLQERHVAFID-K--NRDLYLSMWSHS-------------LDKPDTGSVYDLVWSSDAT  304 (323)
Q Consensus       242 ~-~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~-~--~~~~~~~~~~~~-------------~~~~~~~~v~~~~~s~~g~  304 (323)
                      . .........|..+.+||||    ..+++.- .  .+.+.+--+...             +.......+.+++|.+++.
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG----~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~  178 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDG----TRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST  178 (253)
T ss_pred             EEecccccCCceEEEEECCCC----cEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence            1 1011122289999999999    4555443 1  233333322211             1111246789999999998


Q ss_pred             eeEeeecCCe
Q psy11524        305 QIAGACANGS  314 (323)
Q Consensus       305 ~l~s~~~dg~  314 (323)
                      +++.+...+.
T Consensus       179 L~V~~~~~~~  188 (253)
T PF10647_consen  179 LVVLGRSAGG  188 (253)
T ss_pred             EEEEeCCCCC
Confidence            7775554443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4649|consensus

Probab=97.64  E-value=0.018  Score=44.99  Aligned_cols=92  Identities=16%  Similarity=0.121  Sum_probs=55.6

Q ss_pred             CCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCc
Q psy11524         92 DSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHP  168 (323)
Q Consensus        92 ~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~  168 (323)
                      -|++++.|... |.+++.+.++.  ...+.....-=......+++.++..++.|++.+   ..|.. ..++.+.+...+.
T Consensus        62 vgdfVV~GCy~-g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~y---alD~~~~~cVykskcgG~~  137 (354)
T KOG4649|consen   62 VGDFVVLGCYS-GGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFY---ALDPKTYGCVYKSKCGGGT  137 (354)
T ss_pred             ECCEEEEEEcc-CcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEE---EecccccceEEecccCCce
Confidence            46678777766 57777766655  333322221112334577899999999999999   98885 4555665544444


Q ss_pred             eeEEEEec-CCCEEEEEeCC
Q psy11524        169 ISSLAWAP-GGDMFAVGSYN  187 (323)
Q Consensus       169 v~~~~~~p-~~~~l~~~~~~  187 (323)
                      ..+.+..| ++.++++...+
T Consensus       138 f~sP~i~~g~~sly~a~t~G  157 (354)
T KOG4649|consen  138 FVSPVIAPGDGSLYAAITAG  157 (354)
T ss_pred             eccceecCCCceEEEEeccc
Confidence            44555666 45444443334

>KOG4640|consensus

Probab=97.63  E-value=0.00047  Score=59.83  Aligned_cols=92  Identities=22%  Similarity=0.334  Sum_probs=75.3

Q ss_pred             CCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCcee-EEEEecCCCEEEEEeCC-eEEEEeCCCC-e
Q psy11524        122 DGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPIS-SLAWAPGGDMFAVGSYN-TLRLCDKVGW-S  198 (323)
Q Consensus       122 ~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~  198 (323)
                      ...+.-+.|+|.-.++|.+..+|.+.   +..++-+.+.++..+...++ +++|.|||+.+|+|-.| +|++.|.... .
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gell---i~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELL---IHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEE---EEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence            44677899999999999999999999   99999888999887777777 99999999999999996 9999998754 3


Q ss_pred             eee-cCCCCccEEEEEEcC
Q psy11524        199 HSL-DKPDTGSVYDLVWSN  216 (323)
Q Consensus       199 ~~~-~~~~~~~v~~~~~~~  216 (323)
                      +.. .......|.++-|++
T Consensus        97 l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eeccccccccchheeeccc
Confidence            322 233456788888874

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.61  E-value=0.024  Score=45.53  Aligned_cols=143  Identities=18%  Similarity=0.154  Sum_probs=94.1

Q ss_pred             CCEEEEEEcCCCCeEEEEe--eCCeEEEEeCCCCceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEe--CCCC
Q psy11524         82 PPVYSAAWSPDSNKVLLTQ--AKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWD--TDGR  157 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~--~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d--~~~~  157 (323)
                      ..+.+.+++++|+.+++..  .+...++.+...+...... ....+....|++++...+....+...+   ++.  .++.
T Consensus        24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~---~~~~~~~g~   99 (253)
T PF10647_consen   24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVR---VVRDSASGT   99 (253)
T ss_pred             ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceE---EEEecCCCc
Confidence            3789999999999998877  5556788887766544432 333778899999988777766666666   553  2222


Q ss_pred             e-eeEeec--CCCceeEEEEecCCCEEEEEeC----CeEEEEeCC----C-C-----eeeecCCCCccEEEEEEcCCCCE
Q psy11524        158 Q-LYSSLT--HDHPISSLAWAPGGDMFAVGSY----NTLRLCDKV----G-W-----SHSLDKPDTGSVYDLVWSNDATQ  220 (323)
Q Consensus       158 ~-~~~~~~--~~~~v~~~~~~p~~~~l~~~~~----~~i~i~d~~----~-~-----~~~~~~~~~~~v~~~~~~~~~~~  220 (323)
                      . ...+..  ....|..+++||||..++....    +.|.+--+.    + .     ...........+..++|.+++.+
T Consensus       100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L  179 (253)
T PF10647_consen  100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL  179 (253)
T ss_pred             ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence            1 122221  1228999999999999877762    367666532    2 1     11122233467899999999987


Q ss_pred             EEEEecCc
Q psy11524        221 IAGACANV  228 (323)
Q Consensus       221 l~~~~~d~  228 (323)
                      ++.+...+
T Consensus       180 ~V~~~~~~  187 (253)
T PF10647_consen  180 VVLGRSAG  187 (253)
T ss_pred             EEEeCCCC
Confidence            77665544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.58  E-value=0.039  Score=47.27  Aligned_cols=191  Identities=12%  Similarity=0.120  Sum_probs=99.3

Q ss_pred             eccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEee---c------CCCceeEEEEec-----CC---CEE
Q psy11524        119 QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSL---T------HDHPISSLAWAP-----GG---DMF  181 (323)
Q Consensus       119 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~---~------~~~~v~~~~~~p-----~~---~~l  181 (323)
                      ....++|++++.| |=-++|.|.++|.+.   |.|+++..+..-.   .      ....++++.|+.     |+   -.+
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~---viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLV---VIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEE---EEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEE---EEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence            3457899999987 555999999999999   9999876553321   1      233577888863     33   347


Q ss_pred             EEEeC-CeEEEEeCC--C-C--eee---ecCCCCccEEEEE-EcCC---------------------CCEEEEEecCcEE
Q psy11524        182 AVGSY-NTLRLCDKV--G-W--SHS---LDKPDTGSVYDLV-WSND---------------------ATQIAGACANVIH  230 (323)
Q Consensus       182 ~~~~~-~~i~i~d~~--~-~--~~~---~~~~~~~~v~~~~-~~~~---------------------~~~l~~~~~d~i~  230 (323)
                      ++|.. |.+.+|.+.  . .  ...   ....+.+++..+. ++.+                     ..++++++...++
T Consensus       159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir  238 (395)
T PF08596_consen  159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR  238 (395)
T ss_dssp             EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence            77777 688888742  1 1  111   1223455555544 3211                     1144555544499


Q ss_pred             EEEcCCCceeeeecCCCCccceEEEEEc-----cCCCCccceEEEEeCCCCeEEEecccc--------cCCCCccceeEE
Q psy11524        231 IFDISSSSSSNVTAPLSHSHEITQLAVN-----QTGSLQERHVAFIDKNRDLYLSMWSHS--------LDKPDTGSVYDL  297 (323)
Q Consensus       231 iwd~~~~~~~~~~~~~~~~~~v~~~~~~-----p~g~~~d~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~  297 (323)
                      ++...+.+.....  .........+.+-     ..+    ..|.....+|.+.++.+...        ....+...+...
T Consensus       239 v~~~~~~k~~~K~--~~~~~~~~~~~vv~~~~~~~~----~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s  312 (395)
T PF08596_consen  239 VFKPPKSKGAHKS--FDDPFLCSSASVVPTISRNGG----YCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS  312 (395)
T ss_dssp             EE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEE----EEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred             EEeCCCCccccee--eccccccceEEEEeecccCCc----eEEEEEECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence            9998888776652  3332333444453     233    56777788888988888774        111223445667


Q ss_pred             EEeeCCCeeEeeecCCeEEEEEe
Q psy11524        298 VWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       298 ~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      +++++|..++-.+. ..+.++.+
T Consensus       313 sis~~Gdi~~~~gp-sE~~l~sv  334 (395)
T PF08596_consen  313 SISRNGDIFYWTGP-SEIQLFSV  334 (395)
T ss_dssp             EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred             EECCCCCEEEEeCc-ccEEEEEE
Confidence            78889987665543 34444444

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.58  E-value=0.044  Score=47.73  Aligned_cols=211  Identities=13%  Similarity=0.172  Sum_probs=108.8

Q ss_pred             eEeeEeccCCcceeeeeeccccc-cccceeee-----cC---CCCCEEEEEEcCCCCeEEEEeeC----------CeEEE
Q psy11524         47 VINYPISPYISVLHSYAASHSWP-QALSLCRT-----LN---VSPPVYSAAWSPDSNKVLLTQAK----------SLVIK  107 (323)
Q Consensus        47 v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~---~~~~v~~~~~sp~~~~l~~~~~~----------~~~v~  107 (323)
                      +....+||+++.++..+..++-+ ..+++...     +.   .......+.|.++++.+++...+          ...|+
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            34678999998887665544322 22222111     10   11112239999999988877532          23578


Q ss_pred             EeCCCCc----eeEeeccCCC--eEEEEECCCCCEEEEEcCCCce-EeeeEEeCCCC-----eeeEeecCCCcee-EEEE
Q psy11524        108 PLSPNNK----ATKWQAHDGL--ILKVAWCSSTDLILSGGEDCKY-KASFVWDTDGR-----QLYSSLTHDHPIS-SLAW  174 (323)
Q Consensus       108 ~~~~~~~----~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~~i-~~i~v~d~~~~-----~~~~~~~~~~~v~-~~~~  174 (323)
                      .|.+.+.    ...+......  ...+..++|+++|+.....+.- ..+++.++...     ....+......+. .+..
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~  285 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH  285 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence            8887765    2334433332  5688899999987765544433 45558888643     4444444333343 3433


Q ss_pred             ecCCCEEEEEeC---C-eEEEEeCCCCe----eeecCCCCc--cEEEEEEcCCCCEEE-EEecCc---EEEEEcCCCcee
Q psy11524        175 APGGDMFAVGSY---N-TLRLCDKVGWS----HSLDKPDTG--SVYDLVWSNDATQIA-GACANV---IHIFDISSSSSS  240 (323)
Q Consensus       175 ~p~~~~l~~~~~---~-~i~i~d~~~~~----~~~~~~~~~--~v~~~~~~~~~~~l~-~~~~d~---i~iwd~~~~~~~  240 (323)
                      . ++.+++....   + .|.-.++....    ...+..+..  .+..+...  +.+|+ ....++   |+++++..+...
T Consensus       286 ~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~~  362 (414)
T PF02897_consen  286 H-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDDGKES  362 (414)
T ss_dssp             E-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred             c-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCCCcEE
Confidence            3 4444444433   2 56666766432    223444544  34555443  44444 444555   899998834433


Q ss_pred             eeecCCCCccceEEEEEccCC
Q psy11524        241 NVTAPLSHSHEITQLAVNQTG  261 (323)
Q Consensus       241 ~~~~~~~~~~~v~~~~~~p~g  261 (323)
                      ... .....+.+..+...+++
T Consensus       363 ~~~-~~p~~g~v~~~~~~~~~  382 (414)
T PF02897_consen  363 REI-PLPEAGSVSGVSGDFDS  382 (414)
T ss_dssp             EEE-ESSSSSEEEEEES-TT-
T ss_pred             eee-cCCcceEEeccCCCCCC
Confidence            332 22233445666555554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.57  E-value=0.0051  Score=56.59  Aligned_cols=135  Identities=20%  Similarity=0.322  Sum_probs=86.9

Q ss_pred             CeEEEEeeCCeEEEEeCCCCc--eeEeeccCCC-eEEEEECCC-------CCEEEEEcCCCceEeeeEEeCC--CCeeeE
Q psy11524         94 NKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGL-ILKVAWCSS-------TDLILSGGEDCKYKASFVWDTD--GRQLYS  161 (323)
Q Consensus        94 ~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~-v~~~~~~~~-------~~~l~~~~~d~~i~~i~v~d~~--~~~~~~  161 (323)
                      ++|+.-..+...|+-.|++.+  +..+..+... |..  +.|+       ....+.|-.+..+.   .||.+  +..+..
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lf---riDpR~~~~k~v~  568 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLF---RIDPRLSGNKLVD  568 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceE---EeccCCCCCceee
Confidence            344433233346777777755  5566666543 444  4443       23345566677777   99985  332221


Q ss_pred             ee----cCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCCe-eeecCCCCccEEEEEEcCCCCEEEEEecCcEEEEEc
Q psy11524        162 SL----THDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGWS-HSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDI  234 (323)
Q Consensus       162 ~~----~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~i~iwd~  234 (323)
                      -.    ......+|++-+.+| +||+|+. |.||+||.-+.. ...+.+...+|..+..+.||++|++.+..-|.|++.
T Consensus       569 ~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  569 SQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             ccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence            11    234567888888777 5777777 699999954432 234556688999999999999998888666667664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.53  E-value=0.0076  Score=40.74  Aligned_cols=96  Identities=16%  Similarity=0.189  Sum_probs=58.8

Q ss_pred             EEEEEEcC---CC-CEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCC----CccceEEEEeCCCCeEE
Q psy11524        209 VYDLVWSN---DA-TQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGS----LQERHVAFIDKNRDLYL  279 (323)
Q Consensus       209 v~~~~~~~---~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~----~~d~~l~~~~~~~~~~~  279 (323)
                      |+++++..   +| +.|++|+.|. |++|+-.  +.+.+  +. ....+..+.-...++    ..+++|.+++.  ..++
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E--i~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~Rl   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAE--IT-ETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRL   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEE--Ee-cccceEEEEEcCCCEEEEEecCCEEEEEeC--ccee
Confidence            55666654   33 5799999999 9999833  44444  22 234455555444432    22356666543  5567


Q ss_pred             EecccccCCCCccceeEEEEeeC---C-CeeEeeecCCeEEE
Q psy11524        280 SMWSHSLDKPDTGSVYDLVWSSD---A-TQIAGACANGSLLL  317 (323)
Q Consensus       280 ~~~~~~~~~~~~~~v~~~~~s~~---g-~~l~s~~~dg~i~~  317 (323)
                      |.+++      ...+.++++..-   | ..|++|-.+|.|-+
T Consensus        75 WRiKS------K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   75 WRIKS------KNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             eeecc------CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            77776      555666665543   2 37999999998753

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.48  E-value=0.026  Score=48.78  Aligned_cols=104  Identities=9%  Similarity=-0.019  Sum_probs=58.8

Q ss_pred             CCEEEEEcCCCceEeeeEEeC-CCCeeeEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCCeeeecCCCCccEEE
Q psy11524        134 TDLILSGGEDCKYKASFVWDT-DGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGWSHSLDKPDTGSVYD  211 (323)
Q Consensus       134 ~~~l~~~~~d~~i~~i~v~d~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~v~~  211 (323)
                      +..++.++.++.+.   .+|. +++.+...........+.... ++ .++++.. +.++.+|.++.+.........+...
T Consensus       120 ~~~v~v~~~~g~l~---ald~~tG~~~W~~~~~~~~~ssP~v~-~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~  194 (394)
T PRK11138        120 GGKVYIGSEKGQVY---ALNAEDGEVAWQTKVAGEALSRPVVS-DG-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT  194 (394)
T ss_pred             CCEEEEEcCCCEEE---EEECCCCCCcccccCCCceecCCEEE-CC-EEEEECCCCEEEEEEccCCCEeeeecCCCCccc
Confidence            55677788899998   9998 477776655332211112222 34 4555555 5899999875433322111111000


Q ss_pred             --EEEcC--CCCEEEEEecCc-EEEEEcCCCceeee
Q psy11524        212 --LVWSN--DATQIAGACANV-IHIFDISSSSSSNV  242 (323)
Q Consensus       212 --~~~~~--~~~~l~~~~~d~-i~iwd~~~~~~~~~  242 (323)
                        ..-+|  .+..++.++.++ +..+|..+|+.+..
T Consensus       195 ~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~  230 (394)
T PRK11138        195 LRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQ  230 (394)
T ss_pred             ccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhhe
Confidence              00112  123566777788 99999998887654

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.48  E-value=0.034  Score=46.58  Aligned_cols=163  Identities=13%  Similarity=0.063  Sum_probs=94.4

Q ss_pred             CceEeeeEEeCCCC-----eeeEe--ecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCe-eeecCC--CCccEEEEE
Q psy11524        144 CKYKASFVWDTDGR-----QLYSS--LTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWS-HSLDKP--DTGSVYDLV  213 (323)
Q Consensus       144 ~~i~~i~v~d~~~~-----~~~~~--~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~-~~~~~~--~~~~v~~~~  213 (323)
                      |.+.   ++++...     .+..+  ...+++|++++-- ++ .++++..+.|.+|++.... +.....  ....+.++.
T Consensus        62 Gri~---v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~  136 (321)
T PF03178_consen   62 GRIL---VFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLS  136 (321)
T ss_dssp             EEEE---EEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEE
T ss_pred             cEEE---EEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEeecCEEEEEEccCcccchhhheecceEEEEEEe
Confidence            7788   9998652     33332  3457788888755 34 4777766799999977544 332221  223566665


Q ss_pred             EcCCCCEEEEEecCc-EEEEEcCC-CceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc---cC-
Q psy11524        214 WSNDATQIAGACANV-IHIFDISS-SSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---LD-  287 (323)
Q Consensus       214 ~~~~~~~l~~~~~d~-i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---~~-  287 (323)
                      ..  +++++.|.... +.++.... .+.+..+.-......+.++.|-+++    ..+.+.|.++.+.++.....   .. 
T Consensus       137 ~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~----~~~i~~D~~gnl~~l~~~~~~~~~~~  210 (321)
T PF03178_consen  137 VF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE----DTIIVGDKDGNLFVLRYNPEIPNSRD  210 (321)
T ss_dssp             EE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS----SEEEEEETTSEEEEEEE-SS-SSTTT
T ss_pred             cc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCC----cEEEEEcCCCeEEEEEECCCCccccc
Confidence            55  55888888766 76664332 2222221112345578888888776    58999999999988877642   00 


Q ss_pred             ---C------CC-ccceeEE---EEeeC--CC------eeEeeecCCeEEE
Q psy11524        288 ---K------PD-TGSVYDL---VWSSD--AT------QIAGACANGSLLL  317 (323)
Q Consensus       288 ---~------~~-~~~v~~~---~~s~~--g~------~l~s~~~dg~i~~  317 (323)
                         +      .| +..|+++   ++.|.  +.      .++.++.+|.|..
T Consensus       211 ~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  211 GDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             TTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             ccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence               0      01 3456666   55552  22      3888889999874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.47  E-value=0.034  Score=44.19  Aligned_cols=154  Identities=12%  Similarity=0.114  Sum_probs=95.9

Q ss_pred             EEEcCCCCeEEEEeeC----CeEEEEeCCCCc---eeEeeccCCCeEEEEECCCCCEEEEEcCCCceE------------
Q psy11524         87 AAWSPDSNKVLLTQAK----SLVIKPLSPNNK---ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYK------------  147 (323)
Q Consensus        87 ~~~sp~~~~l~~~~~~----~~~v~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~------------  147 (323)
                      =.|||||.+|..+-++    .|.|-+||...+   +..+..|.-....+.|.+||+.++.+.  |-|.            
T Consensus       119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNl  196 (366)
T COG3490         119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNL  196 (366)
T ss_pred             cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccch
Confidence            4699999999866432    378899998765   556778888888999999999988764  3232            


Q ss_pred             -----eeeEEe-CCCCeeeEe--e--cCCCceeEEEEecCCCEEEEEeC-C-e---EEEEe--CCCCeeeecC-------
Q psy11524        148 -----ASFVWD-TDGRQLYSS--L--THDHPISSLAWAPGGDMFAVGSY-N-T---LRLCD--KVGWSHSLDK-------  203 (323)
Q Consensus       148 -----~i~v~d-~~~~~~~~~--~--~~~~~v~~~~~~p~~~~l~~~~~-~-~---i~i~d--~~~~~~~~~~-------  203 (323)
                           .+-+.| .++..+.+.  .  .+.-.+..++..+||+.++.+-. + .   --+.-  ..++.+..+.       
T Consensus       197 dsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~  276 (366)
T COG3490         197 DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTA  276 (366)
T ss_pred             hhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHH
Confidence                 011333 233333222  1  23446888888888877665543 2 1   11111  1233332221       


Q ss_pred             CCCccEEEEEEcCCCCEEEEEecCc--EEEEEcCCCceeee
Q psy11524        204 PDTGSVYDLVWSNDATQIAGACANV--IHIFDISSSSSSNV  242 (323)
Q Consensus       204 ~~~~~v~~~~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~  242 (323)
                      .....|-+++.+-+..+++..+-.|  ..+||..+|..+..
T Consensus       277 ~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~  317 (366)
T COG3490         277 AFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE  317 (366)
T ss_pred             HHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence            1223577888887666666666655  89999999998775

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.46  E-value=0.037  Score=43.98  Aligned_cols=152  Identities=16%  Similarity=0.121  Sum_probs=93.3

Q ss_pred             cccceeeecCCCCCEEEEEEcCCCCe-EEEEeeCCeEEEEeCCCCc--eeEeeccCCC--eEEEEECCCCCEEEEEcCC-
Q psy11524         70 QALSLCRTLNVSPPVYSAAWSPDSNK-VLLTQAKSLVIKPLSPNNK--ATKWQAHDGL--ILKVAWCSSTDLILSGGED-  143 (323)
Q Consensus        70 ~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d-  143 (323)
                      ..+++.....-......|+|+|.-.. ++++-.-.....++|..+.  ...+...+++  --.=.|||||.+|+..-.| 
T Consensus        56 eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf  135 (366)
T COG3490          56 EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF  135 (366)
T ss_pred             cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence            34444444445667778999997654 4444444334567777654  3333222221  1234689999999876543 


Q ss_pred             ----CceEeeeEEeCC--CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-e------------------EEEEe-CCCC
Q psy11524        144 ----CKYKASFVWDTD--GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-T------------------LRLCD-KVGW  197 (323)
Q Consensus       144 ----~~i~~i~v~d~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~------------------i~i~d-~~~~  197 (323)
                          |.|-   |||.+  -+.+-.+..|.-....+.|.+||+.++.+..+ .                  +.+.| ..+.
T Consensus       136 d~~rGViG---vYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~  212 (366)
T COG3490         136 DPNRGVIG---VYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGN  212 (366)
T ss_pred             CCCCceEE---EEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccc
Confidence                6788   99996  34556677787788899999999998877542 1                  33344 2222


Q ss_pred             eee--ecC--CCCccEEEEEEcCCCCEEEEE
Q psy11524        198 SHS--LDK--PDTGSVYDLVWSNDATQIAGA  224 (323)
Q Consensus       198 ~~~--~~~--~~~~~v~~~~~~~~~~~l~~~  224 (323)
                      .+.  .+.  .+.-.++.++..+||..++.+
T Consensus       213 liekh~Lp~~l~~lSiRHld~g~dgtvwfgc  243 (366)
T COG3490         213 LIEKHTLPASLRQLSIRHLDIGRDGTVWFGC  243 (366)
T ss_pred             hhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence            211  111  234468889999998766544

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.42  E-value=0.057  Score=45.20  Aligned_cols=178  Identities=12%  Similarity=0.087  Sum_probs=96.4

Q ss_pred             CCeEEEEee--------CC-eEEEEeCCCC------cee--EeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC
Q psy11524         93 SNKVLLTQA--------KS-LVIKPLSPNN------KAT--KWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD  155 (323)
Q Consensus        93 ~~~l~~~~~--------~~-~~v~~~~~~~------~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~  155 (323)
                      ..++++|..        .. |.+.+++...      ++.  .-....++|.+++-- ++. |+++. .+.+.   +|++.
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~---v~~l~  115 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLY---VYDLD  115 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEE---EEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEE---EEEcc
Confidence            456776653        12 7888888766      222  223457889888765 444 44333 57888   99996


Q ss_pred             CCe-eeEeecCCC--ceeEEEEecCCCEEEEEeC-CeEE--EEeCCCCeeeec--CCCCccEEEEEEcCCCCEEEEEecC
Q psy11524        156 GRQ-LYSSLTHDH--PISSLAWAPGGDMFAVGSY-NTLR--LCDKVGWSHSLD--KPDTGSVYDLVWSNDATQIAGACAN  227 (323)
Q Consensus       156 ~~~-~~~~~~~~~--~v~~~~~~p~~~~l~~~~~-~~i~--i~d~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d  227 (323)
                      ... +........  .+.++...  ++++++|.. +.+.  -|+.........  ......+.++.+-++++.++.+..+
T Consensus       116 ~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~  193 (321)
T PF03178_consen  116 NSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKD  193 (321)
T ss_dssp             TTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETT
T ss_pred             CcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCC
Confidence            444 444433333  45555544  668888887 4444  456544323222  2235568899998777788889999


Q ss_pred             c-EEEEEcCC-------Cc-eeeeecCCCCccceEEE---EEccC--CC--CccceEEEEeCCCCeE
Q psy11524        228 V-IHIFDISS-------SS-SSNVTAPLSHSHEITQL---AVNQT--GS--LQERHVAFIDKNRDLY  278 (323)
Q Consensus       228 ~-i~iwd~~~-------~~-~~~~~~~~~~~~~v~~~---~~~p~--g~--~~d~~l~~~~~~~~~~  278 (323)
                      | +.++....       +. .+...........|+++   .+.|.  +.  .....+..+..+|.+.
T Consensus       194 gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig  260 (321)
T PF03178_consen  194 GNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIG  260 (321)
T ss_dssp             SEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EE
T ss_pred             CeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEE
Confidence            9 99887652       11 12211011233456666   55552  21  0112477777888876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>smart00320 WD40 WD40 repeats

Probab=97.40  E-value=0.00064  Score=35.95  Aligned_cols=36  Identities=25%  Similarity=0.517  Sum_probs=31.5

Q ss_pred             eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEe
Q psy11524        115 ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWD  153 (323)
Q Consensus       115 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d  153 (323)
                      ...+..|...|.++.|.+++..+++++.|+.++   +|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~---~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIK---LWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEE---EcC
Confidence            345567888999999999999999999999999   986

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.30  E-value=0.097  Score=45.25  Aligned_cols=208  Identities=16%  Similarity=0.053  Sum_probs=100.6

Q ss_pred             CCeEEEEeeCCeEEEEeCCCCceeEee-ccCCCeEE-EEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCce
Q psy11524         93 SNKVLLTQAKSLVIKPLSPNNKATKWQ-AHDGLILK-VAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPI  169 (323)
Q Consensus        93 ~~~l~~~~~~~~~v~~~~~~~~~~~~~-~~~~~v~~-~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v  169 (323)
                      +..+++++.+ +.++-+|..+....+. ...+.+.+ ...  .+..++.+..++.+.   .+|.+ ++.+..........
T Consensus       120 ~~~v~v~~~~-g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~---ald~~tG~~~W~~~~~~~~~  193 (394)
T PRK11138        120 GGKVYIGSEK-GQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQ---ALNESDGAVKWTVNLDVPSL  193 (394)
T ss_pred             CCEEEEEcCC-CEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEE---EEEccCCCEeeeecCCCCcc
Confidence            4556666544 6888888755422221 11222211 111  244666777888888   99984 77776664321111


Q ss_pred             -----eEEEEecCCCEEEEEeC-CeEEEEeCCCCeeeecCCC--C---c---cEEEEEEcC--CCCEEEEEecCc-EEEE
Q psy11524        170 -----SSLAWAPGGDMFAVGSY-NTLRLCDKVGWSHSLDKPD--T---G---SVYDLVWSN--DATQIAGACANV-IHIF  232 (323)
Q Consensus       170 -----~~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~--~---~---~v~~~~~~~--~~~~l~~~~~d~-i~iw  232 (323)
                           .+.... ++ .++.++. +.+..+|..+.........  .   .   ....+.-+|  .+..++.++.++ +..+
T Consensus       194 ~~~~~~sP~v~-~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~al  271 (394)
T PRK11138        194 TLRGESAPATA-FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVAL  271 (394)
T ss_pred             cccCCCCCEEE-CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEE
Confidence                 111111 23 3444444 5888888764322211100  0   0   011111223  345677777888 9999


Q ss_pred             EcCCCceeeeecCCCCccceEEEEEccCC-C----CccceEEEEeCCCCeEEEecccccCCCCccceeEEEEeeCCCeeE
Q psy11524        233 DISSSSSSNVTAPLSHSHEITQLAVNQTG-S----LQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIA  307 (323)
Q Consensus       233 d~~~~~~~~~~~~~~~~~~v~~~~~~p~g-~----~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  307 (323)
                      |..+|+.+.+..+..    ...+..  .+ .    ..++.+...+..+...+|..... .   .....+...  .+..|+
T Consensus       272 d~~tG~~~W~~~~~~----~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-~---~~~~~sp~v--~~g~l~  339 (394)
T PRK11138        272 DLRSGQIVWKREYGS----VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDL-L---HRLLTAPVL--YNGYLV  339 (394)
T ss_pred             ECCCCCEEEeecCCC----ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEccccc-C---CCcccCCEE--ECCEEE
Confidence            999998776521211    111111  11 0    11234444555444455544321 0   111122222  244677


Q ss_pred             eeecCCeEEEEEe
Q psy11524        308 GACANGSLLLGTI  320 (323)
Q Consensus       308 s~~~dg~i~~~~l  320 (323)
                      .++.||.+++.+.
T Consensus       340 v~~~~G~l~~ld~  352 (394)
T PRK11138        340 VGDSEGYLHWINR  352 (394)
T ss_pred             EEeCCCEEEEEEC
Confidence            7788888777654

>smart00320 WD40 WD40 repeats

Probab=97.26  E-value=0.00085  Score=35.43  Aligned_cols=33  Identities=30%  Similarity=0.415  Sum_probs=28.3

Q ss_pred             ecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEE
Q psy11524        201 LDKPDTGSVYDLVWSNDATQIAGACANV-IHIFD  233 (323)
Q Consensus       201 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd  233 (323)
                      ....|...+.++.|++++.++++++.|+ +++||
T Consensus         7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        7 TLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3445777899999999989999999999 99986

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.26  E-value=0.035  Score=47.37  Aligned_cols=142  Identities=13%  Similarity=0.071  Sum_probs=77.5

Q ss_pred             CCEEEEEEcCCCCeEEEEe----------eCCe-EEEEeCCC---Cc---eeEeeccCCCeEEEEECCCCCEEEEEcCCC
Q psy11524         82 PPVYSAAWSPDSNKVLLTQ----------AKSL-VIKPLSPN---NK---ATKWQAHDGLILKVAWCSSTDLILSGGEDC  144 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~----------~~~~-~v~~~~~~---~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  144 (323)
                      .....|+|.++|+.+++-.          ...+ .|.+++..   ++   ...+...-.....+++.++| +++ ++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            4567788999888766532          1112 56555432   22   23333334456889999888 444 44443


Q ss_pred             ceEeeeEEeCCC------CeeeEee---c----CCCceeEEEEecCCCEEEEEeC--------------------CeEEE
Q psy11524        145 KYKASFVWDTDG------RQLYSSL---T----HDHPISSLAWAPGGDMFAVGSY--------------------NTLRL  191 (323)
Q Consensus       145 ~i~~i~v~d~~~------~~~~~~~---~----~~~~v~~~~~~p~~~~l~~~~~--------------------~~i~i  191 (323)
                      ..+   +.+.++      +....+.   .    +......++|.|||.+.++.+.                    +.+.-
T Consensus        92 i~~---~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r  168 (367)
T TIGR02604        92 ILF---LRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR  168 (367)
T ss_pred             EEE---EeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence            333   335432      1111111   1    1234678999999987665442                    12444


Q ss_pred             EeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc
Q psy11524        192 CDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV  228 (323)
Q Consensus       192 ~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  228 (323)
                      +|..+.........-.....++|+|+|+++++-..+.
T Consensus       169 ~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~~  205 (367)
T TIGR02604       169 YNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDDP  205 (367)
T ss_pred             EecCCCeEEEEecCcCCCccceECCCCCEEEEccCCC
Confidence            4555544443332333467899999998876654443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.23  E-value=0.053  Score=43.05  Aligned_cols=178  Identities=17%  Similarity=0.140  Sum_probs=95.4

Q ss_pred             CCCCeEEEEeeCCeEEEEeCCCCc-e-eEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC-CCCeeeEe-ecCC
Q psy11524         91 PDSNKVLLTQAKSLVIKPLSPNNK-A-TKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT-DGRQLYSS-LTHD  166 (323)
Q Consensus        91 p~~~~l~~~~~~~~~v~~~~~~~~-~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~-~~~~~~~~-~~~~  166 (323)
                      +++.+++++..+ +.++.+|..+. . ..... .+.+.... ..++..++.+..++.+.   .+|. +++.+... ....
T Consensus        34 ~~~~~v~~~~~~-~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~---~~d~~tG~~~W~~~~~~~  107 (238)
T PF13360_consen   34 PDGGRVYVASGD-GNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLY---ALDAKTGKVLWSIYLTSS  107 (238)
T ss_dssp             EETTEEEEEETT-SEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEE---EEETTTSCEEEEEEE-SS
T ss_pred             EeCCEEEEEcCC-CEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeE---ecccCCcceeeeeccccc
Confidence            356667766544 68999997544 2 22221 22211111 12355666677788888   9996 57777773 3221


Q ss_pred             ---CceeEEEEecCCCEEEEEeC-CeEEEEeCCCCeee-ecCCCC----cc------EEEEEEcCCCCEEEEEecCc-EE
Q psy11524        167 ---HPISSLAWAPGGDMFAVGSY-NTLRLCDKVGWSHS-LDKPDT----GS------VYDLVWSNDATQIAGACANV-IH  230 (323)
Q Consensus       167 ---~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~~-~~~~~~----~~------v~~~~~~~~~~~l~~~~~d~-i~  230 (323)
                         ..........++..++++.. +.+..+|+++..+. ......    ..      +..-....++ .++.++.++ +.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~  186 (238)
T PF13360_consen  108 PPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVV  186 (238)
T ss_dssp             CTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEE
T ss_pred             cccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEE
Confidence               11122233334777888876 59999998754332 221111    11      1222222345 677777777 44


Q ss_pred             EEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        231 IFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       231 iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      -+|..+++.+..  .. . ...... ..+++    +.+.+.+.++.+..++..+
T Consensus       187 ~~d~~tg~~~w~--~~-~-~~~~~~-~~~~~----~~l~~~~~~~~l~~~d~~t  231 (238)
T PF13360_consen  187 AVDLATGEKLWS--KP-I-SGIYSL-PSVDG----GTLYVTSSDGRLYALDLKT  231 (238)
T ss_dssp             EEETTTTEEEEE--EC-S-S-ECEC-EECCC----TEEEEEETTTEEEEEETTT
T ss_pred             EEECCCCCEEEE--ec-C-CCccCC-ceeeC----CEEEEEeCCCEEEEEECCC
Confidence            449999986654  22 1 122221 23444    5666666667777777665

...

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.23  E-value=0.086  Score=43.29  Aligned_cols=222  Identities=14%  Similarity=0.137  Sum_probs=99.8

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc---eeEeecc---CCCeEEEEECCCCCEEEEEcCCCceEeeeEE
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK---ATKWQAH---DGLILKVAWCSSTDLILSGGEDCKYKASFVW  152 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~---~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~  152 (323)
                      .....+.+|.|..+..-.+++ ... .|..-...++   .......   .-...++.|..+ ..+++ +..+.+    +.
T Consensus        14 ~t~~~l~dV~F~d~~~G~~VG-~~g-~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g~l----l~   85 (302)
T PF14870_consen   14 PTDKPLLDVAFVDPNHGWAVG-AYG-TILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPGLL----LH   85 (302)
T ss_dssp             S-SS-EEEEEESSSS-EEEEE-TTT-EEEEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETTEE----EE
T ss_pred             CCCCceEEEEEecCCEEEEEe-cCC-EEEEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCceE----EE
Confidence            356799999999666666655 443 4433332322   1111111   223567777643 34444 445543    34


Q ss_pred             eCCCCe-eeEee---cCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCeee-ecCCCCccEEEEEEcCCCCEEEEEecC
Q psy11524        153 DTDGRQ-LYSSL---THDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHS-LDKPDTGSVYDLVWSNDATQIAGACAN  227 (323)
Q Consensus       153 d~~~~~-~~~~~---~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d  227 (323)
                      ..++.. -..+.   ..++....+....++..++++..+.|+.=.=.+..-+ ......+.+..+..+++|++++++...
T Consensus        86 T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G  165 (302)
T PF14870_consen   86 TTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG  165 (302)
T ss_dssp             ESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred             ecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence            444322 22221   1233344444444444444444454433222232211 233445778999999999999988877


Q ss_pred             c-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEe---------cccccCCCCccceeEE
Q psy11524        228 V-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSM---------WSHSLDKPDTGSVYDL  297 (323)
Q Consensus       228 ~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~v~~~  297 (323)
                      . ..-||.....-...  .......+.+|.|.|++     .+.+....+.+..-+         -.........-.+..+
T Consensus       166 ~~~~s~~~G~~~w~~~--~r~~~~riq~~gf~~~~-----~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~  238 (302)
T PF14870_consen  166 NFYSSWDPGQTTWQPH--NRNSSRRIQSMGFSPDG-----NLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDL  238 (302)
T ss_dssp             SEEEEE-TT-SS-EEE--E--SSS-EEEEEE-TTS------EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEE
T ss_pred             cEEEEecCCCccceEE--ccCccceehhceecCCC-----CEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEE
Confidence            7 88888543222221  23456789999999996     333333444444333         1110111113458999


Q ss_pred             EEeeCCCeeEeeecCCeEE
Q psy11524        298 VWSSDATQIAGACANGSLL  316 (323)
Q Consensus       298 ~~s~~g~~l~s~~~dg~i~  316 (323)
                      +|.+++...++|+ .|.+.
T Consensus       239 a~~~~~~~wa~gg-~G~l~  256 (302)
T PF14870_consen  239 AYRPPNEIWAVGG-SGTLL  256 (302)
T ss_dssp             EESSSS-EEEEES-TT-EE
T ss_pred             EecCCCCEEEEeC-CccEE
Confidence            9999987777665 44443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.18  E-value=0.0011  Score=37.32  Aligned_cols=31  Identities=19%  Similarity=0.294  Sum_probs=28.6

Q ss_pred             ccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        291 TGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       291 ~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      ...|..++|+|....||.++.||.|.+|++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            5679999999999999999999999999873

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.14  E-value=0.14  Score=44.01  Aligned_cols=90  Identities=6%  Similarity=-0.117  Sum_probs=56.8

Q ss_pred             cEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCC--------------CccceEEEEe
Q psy11524        208 SVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGS--------------LQERHVAFID  272 (323)
Q Consensus       208 ~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~--------------~~d~~l~~~~  272 (323)
                      .+.+++.+|++++.++...-| |.++|+.++..++.  ..+....-..-...++..              ...-.|+++-
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrm--WKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya  386 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRM--WKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA  386 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhh--hccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence            467899999998777765556 99999999888776  455433211110000000              1123455554


Q ss_pred             -CCCCeEEEecccccCCCCccceeEEEEeeCCCe
Q psy11524        273 -KNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQ  305 (323)
Q Consensus       273 -~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  305 (323)
                       ..|.+.+|.+..      +..|.++...+++++
T Consensus       387 prRg~lEvW~~~~------g~Rv~a~~v~k~~rL  414 (415)
T PF14655_consen  387 PRRGILEVWSMRQ------GPRVAAFNVGKGCRL  414 (415)
T ss_pred             ccCCeEEEEecCC------CCEEEEEEeCCCcEE
Confidence             467788998876      777888877666654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.13  E-value=0.032  Score=51.60  Aligned_cols=114  Identities=18%  Similarity=0.125  Sum_probs=76.3

Q ss_pred             CCceEeeeEEeCC-CCeeeEeecCCCc-eeEEEEec------CCCEEEEEeCCeEEEEeCC--CCeeeec----CCCCcc
Q psy11524        143 DCKYKASFVWDTD-GRQLYSSLTHDHP-ISSLAWAP------GGDMFAVGSYNTLRLCDKV--GWSHSLD----KPDTGS  208 (323)
Q Consensus       143 d~~i~~i~v~d~~-~~~~~~~~~~~~~-v~~~~~~p------~~~~l~~~~~~~i~i~d~~--~~~~~~~----~~~~~~  208 (323)
                      ...++   -.|++ |+.+..+..+... |.+++=..      +.+.|+.-+.+.+..||.+  +.++...    ......
T Consensus       503 ~~~ly---~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~  579 (794)
T PF08553_consen  503 PNKLY---KMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN  579 (794)
T ss_pred             CCceE---EEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence            45666   88885 7778888776543 55443211      1233444444699999977  3222211    123345


Q ss_pred             EEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCC
Q psy11524        209 VYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGS  262 (323)
Q Consensus       209 v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~  262 (323)
                      ..|++-+.+| +||+|+.+| ||+|| +.|+..++. +.+.+.+|..+..+.||+
T Consensus       580 Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~-lp~lG~pI~~iDvt~DGk  631 (794)
T PF08553_consen  580 FSCFATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTA-LPGLGDPIIGIDVTADGK  631 (794)
T ss_pred             ceEEEecCCc-eEEEEeCCCcEEeec-ccchhhhhc-CCCCCCCeeEEEecCCCc
Confidence            7888888888 799999999 99999 455544443 667789999999999995

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.11  E-value=0.13  Score=44.12  Aligned_cols=192  Identities=17%  Similarity=0.123  Sum_probs=100.6

Q ss_pred             CeEEEEECCCCCEEEEEcCCCceEeeeEEeC--C---C---------------------C------------------ee
Q psy11524        124 LILKVAWCSSTDLILSGGEDCKYKASFVWDT--D---G---------------------R------------------QL  159 (323)
Q Consensus       124 ~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~--~---~---------------------~------------------~~  159 (323)
                      .|..+.|+++...|+++...|.|.   +|..  +   +                     .                  +.
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv---~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~   79 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVV---LFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPL   79 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EE---EEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEE---EEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCch
Confidence            467888888877888888888887   5543  1   1                     0                  00


Q ss_pred             eEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeec---CC------CCccEEEEEEcC-----CC---CEE
Q psy11524        160 YSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLD---KP------DTGSVYDLVWSN-----DA---TQI  221 (323)
Q Consensus       160 ~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~---~~------~~~~v~~~~~~~-----~~---~~l  221 (323)
                      .-+....++|++++.|.=| ++|+|.++ .+.|.|+++..+...   ..      ....++++.|+.     |+   -.|
T Consensus        80 ~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   80 TLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             EEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             hheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence            1112346789999987444 88888885 999999998755321   11      234588888873     33   367


Q ss_pred             EEEecCc-EEEEEcC--C-Cceeeee--cCCCCccceEEEE-EccC-CC----------------CccceEEEEeCCCCe
Q psy11524        222 AGACANV-IHIFDIS--S-SSSSNVT--APLSHSHEITQLA-VNQT-GS----------------LQERHVAFIDKNRDL  277 (323)
Q Consensus       222 ~~~~~d~-i~iwd~~--~-~~~~~~~--~~~~~~~~v~~~~-~~p~-g~----------------~~d~~l~~~~~~~~~  277 (323)
                      ++|+..| +.+|.+-  . +.....+  ....+..++..+. ++.+ |.                ...+++.+ -.+..+
T Consensus       159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv-vSe~~i  237 (395)
T PF08596_consen  159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV-VSESDI  237 (395)
T ss_dssp             EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE-E-SSEE
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE-Ecccce
Confidence            8888889 8888764  1 1111110  0123445555554 4322 22                11233333 334456


Q ss_pred             EEEecccc-----cCCCCccceeEEEE-----eeCCCeeEeeecCCeEEEEEee
Q psy11524        278 YLSMWSHS-----LDKPDTGSVYDLVW-----SSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       278 ~~~~~~~~-----~~~~~~~~v~~~~~-----s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +++.....     ..+. ......+.+     ...+..|++-..+|.|++|.|.
T Consensus       238 rv~~~~~~k~~~K~~~~-~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP  290 (395)
T PF08596_consen  238 RVFKPPKSKGAHKSFDD-PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP  290 (395)
T ss_dssp             EEE-TT---EEEEE-SS--EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred             EEEeCCCCcccceeecc-ccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence            66555442     1111 122334445     2356789999999999999874

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.08  E-value=0.11  Score=41.68  Aligned_cols=159  Identities=13%  Similarity=0.148  Sum_probs=96.9

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeec-cCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC--
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQA-HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD--  155 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~--  155 (323)
                      -...+.++.|+|+.+.|++..+..-.+.-.+.++. +++++- .-.....+.+..++.++++--++..+.   ++.++  
T Consensus        84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~---~~~vd~~  160 (316)
T COG3204          84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALY---LFTVDAD  160 (316)
T ss_pred             ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEE---EEEEcCC
Confidence            45559999999999999888776656665666665 343321 123345678887888777777778777   77663  


Q ss_pred             CCee------eEe---ecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCC----eeeecCCCC-------ccEEEEEE
Q psy11524        156 GRQL------YSS---LTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGW----SHSLDKPDT-------GSVYDLVW  214 (323)
Q Consensus       156 ~~~~------~~~---~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~----~~~~~~~~~-------~~v~~~~~  214 (323)
                      +...      ..+   .......-.++|+|..+.|..+-+ +-+.||.....    .......+.       ..+.++.|
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence            1111      111   112456789999998888888877 65555544321    111111121       23677888


Q ss_pred             cCC-CCEEEEEecCc-EEEEEcCCCceeee
Q psy11524        215 SND-ATQIAGACANV-IHIFDISSSSSSNV  242 (323)
Q Consensus       215 ~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~  242 (323)
                      ++. +..|+.+.+++ +.-.|. .|+++..
T Consensus       241 ~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~  269 (316)
T COG3204         241 NAITNSLLVLSDESRRLLEVDL-SGEVIEL  269 (316)
T ss_pred             cCCCCcEEEEecCCceEEEEec-CCCeeee
Confidence            874 44555555666 777774 3444443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.08  E-value=0.14  Score=43.07  Aligned_cols=154  Identities=13%  Similarity=0.122  Sum_probs=78.6

Q ss_pred             EEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeE-eeccCCCeEEEEEC--CCCCEEEEEcC---CCc-------------
Q psy11524         86 SAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATK-WQAHDGLILKVAWC--SSTDLILSGGE---DCK-------------  145 (323)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~-~~~~~~~v~~~~~~--~~~~~l~~~~~---d~~-------------  145 (323)
                      ...++|+++.+++..... .|+..|+.+. ... +......+....|.  .|+..++-.-.   |..             
T Consensus        85 g~~~s~~~~~~~Yv~~~~-~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~  163 (386)
T PF14583_consen   85 GGFLSPDDRALYYVKNGR-SLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYE  163 (386)
T ss_dssp             T-EE-TTSSEEEEEETTT-EEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHH
T ss_pred             ceEEecCCCeEEEEECCC-eEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHh
Confidence            577788888887764443 6777777665 222 33334444445553  45665543211   110             


Q ss_pred             ---eEeeeEEeCCCCeeeEeecCCCceeEEEEec-CCCEEEEEeCC---e--EEEEeC--CCCeeeecCCC--CccEEEE
Q psy11524        146 ---YKASFVWDTDGRQLYSSLTHDHPISSLAWAP-GGDMFAVGSYN---T--LRLCDK--VGWSHSLDKPD--TGSVYDL  212 (323)
Q Consensus       146 ---i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~~---~--i~i~d~--~~~~~~~~~~~--~~~v~~~  212 (323)
                         -..|+..|+.+.....+.....-+..+.|+| |..+|+.|.++   .  -+||-+  .+........+  ...+..=
T Consensus       164 a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHE  243 (386)
T PF14583_consen  164 ARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHE  243 (386)
T ss_dssp             C---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEE
T ss_pred             hCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccc
Confidence               0123466776666666666666788999999 56778887763   2  367764  34433333322  2346667


Q ss_pred             EEcCCCCEEEEEec-----Cc-EEEEEcCCCcee
Q psy11524        213 VWSNDATQIAGACA-----NV-IHIFDISSSSSS  240 (323)
Q Consensus       213 ~~~~~~~~l~~~~~-----d~-i~iwd~~~~~~~  240 (323)
                      -|.|||..|..-+.     +. |.-+|+.+++..
T Consensus       244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~  277 (386)
T PF14583_consen  244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR  277 (386)
T ss_dssp             EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred             cccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence            79999997765332     33 777788877654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.01  E-value=0.0028  Score=35.68  Aligned_cols=35  Identities=26%  Similarity=0.520  Sum_probs=30.8

Q ss_pred             CCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCee
Q psy11524        122 DGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQL  159 (323)
Q Consensus       122 ~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~  159 (323)
                      ...|..++|+|...+||.++.+|.|.   ++.++++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~---v~Rl~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVL---VYRLNWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEE---EEECCCcCc
Confidence            45689999999999999999999999   999876553

>KOG2395|consensus

Probab=96.98  E-value=0.03  Score=48.29  Aligned_cols=117  Identities=16%  Similarity=0.154  Sum_probs=79.1

Q ss_pred             EEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCC--------EEEEEeCCeEEEEeCC--CC-eeeecCCC-
Q psy11524        139 SGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGD--------MFAVGSYNTLRLCDKV--GW-SHSLDKPD-  205 (323)
Q Consensus       139 ~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~--------~l~~~~~~~i~i~d~~--~~-~~~~~~~~-  205 (323)
                      ++.....++   -.|++ |+.+..+.-+.. |+-+.+.|+.+        .|+..+++.|.-||.+  +. .+.....| 
T Consensus       351 ~~~~~~~l~---klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  351 DGGEQDKLY---KLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             CCCCcCcce---eeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            344445566   67775 677777766555 77777888643        2333344589999976  32 23333322 


Q ss_pred             ---CccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCC
Q psy11524        206 ---TGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGS  262 (323)
Q Consensus       206 ---~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~  262 (323)
                         .....|.+-..+| ++++|+.+| |++||. .+...++. +.+...+|..+..+.+|+
T Consensus       427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTA-lPgLG~~I~hVdvtadGK  484 (644)
T KOG2395|consen  427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTA-LPGLGDAIKHVDVTADGK  484 (644)
T ss_pred             cccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhc-ccccCCceeeEEeeccCc
Confidence               2346677766677 899999999 999995 66555543 778889999999999984

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.84  E-value=0.24  Score=43.73  Aligned_cols=144  Identities=13%  Similarity=0.108  Sum_probs=84.3

Q ss_pred             ecCCCCCEEEEEEcCCC----CeEEEEeeCCeEEEEeCCCCc-------eeEeecc-----CCCeEEEEECCCCCEEEEE
Q psy11524         77 TLNVSPPVYSAAWSPDS----NKVLLTQAKSLVIKPLSPNNK-------ATKWQAH-----DGLILKVAWCSSTDLILSG  140 (323)
Q Consensus        77 ~~~~~~~v~~~~~sp~~----~~l~~~~~~~~~v~~~~~~~~-------~~~~~~~-----~~~v~~~~~~~~~~~l~~~  140 (323)
                      .++.-+.|..+.|+|-+    ..|++.... ..|.+|.+...       ......+     .--...+.|+|....|++-
T Consensus        52 viGqFEhV~GlsW~P~~~~~~paLLAVQHk-khVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VL  130 (671)
T PF15390_consen   52 VIGQFEHVHGLSWAPPCTADTPALLAVQHK-KHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVL  130 (671)
T ss_pred             EeeccceeeeeeecCcccCCCCceEEEecc-ceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEE
Confidence            34455779999999953    234334344 37888875421       1111111     1123467899988877765


Q ss_pred             cCCCceEeeeEEeC--CCCeeeEeecCCCceeEEEEecCCCEEEEEeC-C-eEEEEeCCCCeee-----ecCCCCccEEE
Q psy11524        141 GEDCKYKASFVWDT--DGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSHS-----LDKPDTGSVYD  211 (323)
Q Consensus       141 ~~d~~i~~i~v~d~--~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~~-----~~~~~~~~v~~  211 (323)
                      .....-.   ++++  ++..++.-....+.|.|.+|.+||+.|+++-. . .-++||-..+.+.     ....-.+.|.+
T Consensus       131 T~~dvSV---~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Ics  207 (671)
T PF15390_consen  131 TARDVSV---LPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICS  207 (671)
T ss_pred             ecCceeE---eeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEE
Confidence            5544333   5666  34444433356778999999999999877766 3 7889995433221     12224456666


Q ss_pred             EEEcCCCCEEEEEe
Q psy11524        212 LVWSNDATQIAGAC  225 (323)
Q Consensus       212 ~~~~~~~~~l~~~~  225 (323)
                      +.-.-|. .+|.+.
T Consensus       208 i~AT~ds-qVAvaT  220 (671)
T PF15390_consen  208 IEATVDS-QVAVAT  220 (671)
T ss_pred             EEEeccc-eEEEEe
Confidence            6655544 344433

>KOG4649|consensus

Probab=96.83  E-value=0.17  Score=39.86  Aligned_cols=104  Identities=14%  Similarity=0.167  Sum_probs=64.1

Q ss_pred             cCCCCeEEEEeeCCeEEEEeCCCCceeEe-eccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCC
Q psy11524         90 SPDSNKVLLTQAKSLVIKPLSPNNKATKW-QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDH  167 (323)
Q Consensus        90 sp~~~~l~~~~~~~~~v~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~  167 (323)
                      -+|.+.+++.+...+.+.-.|.......+ ..-..++.+-+.- -|++++.|...|.++   +.+.+ +.+...+...+.
T Consensus        19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lY---fl~~~tGs~~w~f~~~~~   94 (354)
T KOG4649|consen   19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLY---FLCVKTGSQIWNFVILET   94 (354)
T ss_pred             ecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEE---EEEecchhheeeeeehhh
Confidence            34445555444444566666655542222 2223334332222 367899999999999   98885 556666654433


Q ss_pred             ceeEEEEecCCCEEEEEeCC-eEEEEeCCCC
Q psy11524        168 PISSLAWAPGGDMFAVGSYN-TLRLCDKVGW  197 (323)
Q Consensus       168 ~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~  197 (323)
                      -=......+++..+..++.| +.+..|.+++
T Consensus        95 vk~~a~~d~~~glIycgshd~~~yalD~~~~  125 (354)
T KOG4649|consen   95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTY  125 (354)
T ss_pred             hccceEEcCCCceEEEecCCCcEEEeccccc
Confidence            22234557789899999987 9999997754

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.76  E-value=0.27  Score=41.35  Aligned_cols=223  Identities=12%  Similarity=0.079  Sum_probs=107.8

Q ss_pred             CEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCce-eEe-------eccCCCeEEEEECCC----CCEEEEEcCC-------
Q psy11524         83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKA-TKW-------QAHDGLILKVAWCSS----TDLILSGGED-------  143 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~-~~~-------~~~~~~v~~~~~~~~----~~~l~~~~~d-------  143 (323)
                      ..++|+|.|||+.+++  ...|.|++++..+.. ..+       .........++++|+    +.+.++.+..       
T Consensus         3 ~P~~~a~~pdG~l~v~--e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA--ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE--ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE--eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            4678999999987664  446799998844332 221       123456789999995    3333333311       


Q ss_pred             -CceEeeeEEeCCCC--e------e-eEeec---CCCceeEEEEecCCCEEEEEeCC--------------eEEEEeCCC
Q psy11524        144 -CKYKASFVWDTDGR--Q------L-YSSLT---HDHPISSLAWAPGGDMFAVGSYN--------------TLRLCDKVG  196 (323)
Q Consensus       144 -~~i~~i~v~d~~~~--~------~-~~~~~---~~~~v~~~~~~p~~~~l~~~~~~--------------~i~i~d~~~  196 (323)
                       ..|.   -|..+..  .      + ..+..   ....-..|+|.|||.++++.++.              .|.-.+..+
T Consensus        81 ~~~v~---r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG  157 (331)
T PF07995_consen   81 DNRVV---RFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG  157 (331)
T ss_dssp             EEEEE---EEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS
T ss_pred             ceeeE---EEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC
Confidence             1222   3443221  1      1 11121   23345679999999776665531              122223332


Q ss_pred             Ceee--------------ecCCCCccEEEEEEcCC-CCEEEEE-ecCc---EEEEEcCCCc-------------------
Q psy11524        197 WSHS--------------LDKPDTGSVYDLVWSND-ATQIAGA-CANV---IHIFDISSSS-------------------  238 (323)
Q Consensus       197 ~~~~--------------~~~~~~~~v~~~~~~~~-~~~l~~~-~~d~---i~iwd~~~~~-------------------  238 (323)
                      ....              .-.++ .....++|+|. |++.++- +.+.   |.+..  .|.                   
T Consensus       158 ~~p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~--~G~nYGWP~~~~~~~~~~~~~~  234 (331)
T PF07995_consen  158 SIPADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIE--PGGNYGWPYCEGGPKYSGPPIG  234 (331)
T ss_dssp             SB-TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE---TT-B--TTTBSSSCSTTSS-EC
T ss_pred             cCCCCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEec--cCCcCCCCCCcCCCCCCCCccc
Confidence            2000              00111 12567999998 7655442 2222   43332  111                   


Q ss_pred             ----------eeeeecCCCCccceEEEEEccCCC--CccceEEEEeCC-CCeEEEecccc--------cCCCCccceeEE
Q psy11524        239 ----------SSNVTAPLSHSHEITQLAVNQTGS--LQERHVAFIDKN-RDLYLSMWSHS--------LDKPDTGSVYDL  297 (323)
Q Consensus       239 ----------~~~~~~~~~~~~~v~~~~~~p~g~--~~d~~l~~~~~~-~~~~~~~~~~~--------~~~~~~~~v~~~  297 (323)
                                ++..  +. +...+..+.|.....  ...+.+.+.+.. +.+....+...        +.......+..+
T Consensus       235 ~~~~~~~~~~P~~~--~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v  311 (331)
T PF07995_consen  235 DAPSCPGFVPPVFA--YP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDV  311 (331)
T ss_dssp             TGSS-TTS---SEE--ET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEE
T ss_pred             cccCCCCcCcccee--ec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEE
Confidence                      1111  11 224555666654433  223445555543 23433333321        233335579999


Q ss_pred             EEeeCCCeeEeeecCCeEE
Q psy11524        298 VWSSDATQIAGACANGSLL  316 (323)
Q Consensus       298 ~~s~~g~~l~s~~~dg~i~  316 (323)
                      ++.|||.++++-..+|.|+
T Consensus       312 ~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  312 AQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EEETTSEEEEEE-TTTTEE
T ss_pred             EEcCCCeEEEEECCCCeEe
Confidence            9999999888888888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=96.74  E-value=0.32  Score=41.85  Aligned_cols=138  Identities=14%  Similarity=0.149  Sum_probs=83.9

Q ss_pred             EEEEEEcCCCCeEEEEeeCCeEEEEeCCCCce-eE-eeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC-CCC---
Q psy11524         84 VYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKA-TK-WQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT-DGR---  157 (323)
Q Consensus        84 v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~-~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~-~~~---  157 (323)
                      ...+..+++|..++++... ..++-|+..... .. -......+.++.|.+++..++++ ..|.+.    +.. .+.   
T Consensus       241 f~~v~~~~dG~~~~vg~~G-~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~----~S~d~G~~~~  314 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRG-NFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY----VSKGTGLTEE  314 (398)
T ss_pred             eeeEEEcCCCCEEEEECCc-cEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE----EecCCCCccc
Confidence            4556778898888876443 245556655432 21 22334568899999998877665 566664    333 332   


Q ss_pred             --eeeEeec--CCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCeeeec---CCCCccEEEEEEcCCCCEEEEEecCc
Q psy11524        158 --QLYSSLT--HDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLD---KPDTGSVYDLVWSNDATQIAGACANV  228 (323)
Q Consensus       158 --~~~~~~~--~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~  228 (323)
                        .......  ....+.++.|.+++..+++|..+.+..-.-.++.-...   .......+.+.|.++++.+++| .+|
T Consensus       315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G  391 (398)
T PLN00033        315 DFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDG  391 (398)
T ss_pred             ccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCc
Confidence              2222221  22358899999998888888778665555444332222   2335678899998877655555 455

>KOG2079|consensus

Probab=96.71  E-value=0.014  Score=54.34  Aligned_cols=79  Identities=14%  Similarity=0.211  Sum_probs=59.8

Q ss_pred             CCCEEEEEeC-CeEEEEeCCCCee--eecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccce
Q psy11524        177 GGDMFAVGSY-NTLRLCDKVGWSH--SLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEI  252 (323)
Q Consensus       177 ~~~~l~~~~~-~~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v  252 (323)
                      .+..++.|++ +.+-..|.++...  ..-....++|++++|+.+|+.++.|-.+| |.+||+..+++++.  +..+..+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~--i~e~~ap~  175 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKV--ITEHGAPV  175 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceee--eeecCCcc
Confidence            3556778877 5888888876422  22233467899999999999999999999 99999999998887  55565555


Q ss_pred             EEEEE
Q psy11524        253 TQLAV  257 (323)
Q Consensus       253 ~~~~~  257 (323)
                      ..+-+
T Consensus       176 t~vi~  180 (1206)
T KOG2079|consen  176 TGVIF  180 (1206)
T ss_pred             ceEEE
Confidence            55433

>KOG2395|consensus

Probab=96.67  E-value=0.072  Score=46.04  Aligned_cols=138  Identities=21%  Similarity=0.285  Sum_probs=85.4

Q ss_pred             CCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCC--E-----EEEEcCCCceEeeeEEeCC--CC-ee
Q psy11524         92 DSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTD--L-----ILSGGEDCKYKASFVWDTD--GR-QL  159 (323)
Q Consensus        92 ~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~--~-----l~~~~~d~~i~~i~v~d~~--~~-~~  159 (323)
                      +.+.|+..+.....++-.|.+.+  +..+.-+.. |.-+.+.|+.+  +     -+.|-.+..|.   -||++  +. .+
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vf---riDpRv~~~~kl  419 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVF---RIDPRVQGKNKL  419 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceE---EecccccCccee
Confidence            34444444333335555565544  444554544 67777788643  2     23355577777   89984  33 22


Q ss_pred             eEeecC----CCceeEEEEecCCCEEEEEeC-CeEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCcEEEEE
Q psy11524        160 YSSLTH----DHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFD  233 (323)
Q Consensus       160 ~~~~~~----~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~i~iwd  233 (323)
                      ...+.+    .....|.+-..+| ++++|+. |.|++||.-+. ....+.+...+|..+..+.+|++|+..+..-+.+.+
T Consensus       420 ~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~  498 (644)
T KOG2395|consen  420 AVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLID  498 (644)
T ss_pred             eeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEE
Confidence            222222    3346667666666 6788888 59999996433 333566678899999999999999887765555555


Q ss_pred             c
Q psy11524        234 I  234 (323)
Q Consensus       234 ~  234 (323)
                      .
T Consensus       499 t  499 (644)
T KOG2395|consen  499 T  499 (644)
T ss_pred             E
Confidence            3

>KOG2280|consensus

Probab=96.65  E-value=0.36  Score=43.86  Aligned_cols=169  Identities=9%  Similarity=0.054  Sum_probs=93.9

Q ss_pred             EEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEe----ecCCCceeEEEEecCCC
Q psy11524        105 VIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSS----LTHDHPISSLAWAPGGD  179 (323)
Q Consensus       105 ~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~----~~~~~~v~~~~~~p~~~  179 (323)
                      .|++++..+. +..+.-..+.+-.+.|+.+.. |++...+|++.   +|++-+......    ......|..+.+..+|-
T Consensus        65 ~I~If~~sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~---Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV  140 (829)
T KOG2280|consen   65 YIRIFNISGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVH---VYGLLGEFIESNSVGFESQMSDIVECRFFHNGV  140 (829)
T ss_pred             eEEEEeccccchHHHHhcCCCeeeecccCCce-EEEEeccceEE---EeecchhhhcccccccccccCceeEEEEecCce
Confidence            5888888776 333333344788999997654 56678999999   999965554442    33344566666666665


Q ss_pred             EEEEEeCCeEEEEeCCCCeeeecCCCC---ccEEEEEEcCCCC---EEEEEe-cCcEEEEEcCC--CceeeeecCCCCcc
Q psy11524        180 MFAVGSYNTLRLCDKVGWSHSLDKPDT---GSVYDLVWSNDAT---QIAGAC-ANVIHIFDISS--SSSSNVTAPLSHSH  250 (323)
Q Consensus       180 ~l~~~~~~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~---~l~~~~-~d~i~iwd~~~--~~~~~~~~~~~~~~  250 (323)
                      .+++.+..-+.+-+........+...+   -...|-...+++.   .++-.. ..+..++-...  .+...   +....+
T Consensus       141 avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~---~~~~~~  217 (829)
T KOG2280|consen  141 AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHA---LSWPNS  217 (829)
T ss_pred             EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccc---cCCCCc
Confidence            555544334445445443333222211   1112322223321   111111 11122222222  22221   333346


Q ss_pred             ceEEEEEccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        251 EITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       251 ~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      .+..+..||+.    +.|+++...|.+.+.....
T Consensus       218 ~~~ki~VS~n~----~~laLyt~~G~i~~vs~D~  247 (829)
T KOG2280|consen  218 SVVKISVSPNR----RFLALYTETGKIWVVSIDL  247 (829)
T ss_pred             eEEEEEEcCCc----ceEEEEecCCcEEEEecch
Confidence            78889999998    8999999999988766544

>PRK10115 protease 2; Provisional

Probab=96.63  E-value=0.59  Score=43.57  Aligned_cols=192  Identities=8%  Similarity=-0.041  Sum_probs=94.5

Q ss_pred             CEEEEEEcCCCCeEEEEeeCC----eEEEEeCCCCceeEeeccCCCeEEEEECCCCCEEEEEcCC-C--ceEeeeEEeCC
Q psy11524         83 PVYSAAWSPDSNKVLLTQAKS----LVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGED-C--KYKASFVWDTD  155 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~~~----~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~~i~v~d~~  155 (323)
                      .+..+.|||||++|+.+.+..    -.+++.+..++..........-..++|++|++.|+....+ +  .-.+|+.+++.
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg  207 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG  207 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence            467789999999999885443    3477777754421111111112469999999877665543 2  22345588884


Q ss_pred             CC---eeeEeecCCCcee-EEEEecCCCEEEEEeC---C-eEEEEeCC---CCeeeecCCCCccEEEEEEcCCCCEEEEE
Q psy11524        156 GR---QLYSSLTHDHPIS-SLAWAPGGDMFAVGSY---N-TLRLCDKV---GWSHSLDKPDTGSVYDLVWSNDATQIAGA  224 (323)
Q Consensus       156 ~~---~~~~~~~~~~~v~-~~~~~p~~~~l~~~~~---~-~i~i~d~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  224 (323)
                      +.   ....+........ ....+.++++++..+.   + .+.+++..   +..........+....+. +..+.+++..
T Consensus       208 t~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~t  286 (686)
T PRK10115        208 TPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRS  286 (686)
T ss_pred             CChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEE
Confidence            32   2223332233333 3333447877554443   3 68888842   221222211122222222 3333333333


Q ss_pred             ecCc--EEEE--EcCC-CceeeeecCCC-CccceEEEEEccCCCCccceEEEEeCCCCeEEEec
Q psy11524        225 CANV--IHIF--DISS-SSSSNVTAPLS-HSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMW  282 (323)
Q Consensus       225 ~~d~--i~iw--d~~~-~~~~~~~~~~~-~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~  282 (323)
                      ..+.  .+|.  ++.. ++. ..+ +.. ....+..+.+..+     ..+.....++...++.+
T Consensus       287 n~~~~~~~l~~~~~~~~~~~-~~l-~~~~~~~~i~~~~~~~~-----~l~~~~~~~g~~~l~~~  343 (686)
T PRK10115        287 NRHGKNFGLYRTRVRDEQQW-EEL-IPPRENIMLEGFTLFTD-----WLVVEERQRGLTSLRQI  343 (686)
T ss_pred             cCCCCCceEEEecCCCcccC-eEE-ECCCCCCEEEEEEEECC-----EEEEEEEeCCEEEEEEE
Confidence            3222  4444  4442 222 221 222 2346777777733     45555665665554443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.54  E-value=0.35  Score=39.81  Aligned_cols=221  Identities=13%  Similarity=0.089  Sum_probs=101.0

Q ss_pred             CEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeE--ee-ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCe
Q psy11524         83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATK--WQ-AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQ  158 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~--~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~  158 (323)
                      ...++.|..+ ..++ ++.....++--|-...-..  +. .-++....+....++..+++ +..|.|.    ...+ ++.
T Consensus        63 ~l~~I~f~~~-~g~i-vG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~~~G~iy----~T~DgG~t  135 (302)
T PF14870_consen   63 HLNSISFDGN-EGWI-VGEPGLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELA-GDRGAIY----RTTDGGKT  135 (302)
T ss_dssp             EEEEEEEETT-EEEE-EEETTEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEE-ETT--EE----EESSTTSS
T ss_pred             eEEEEEecCC-ceEE-EcCCceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-cCCCcEE----EeCCCCCC
Confidence            4677888643 3333 4455433444343332111  11 12333444444444444443 3445553    2223 222


Q ss_pred             -eeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEE-
Q psy11524        159 -LYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFD-  233 (323)
Q Consensus       159 -~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd-  233 (323)
                       ........+.+..+.-++||++++++..+ .+.-||.-.. =..........+..+.|+|++...+.+ .++ |+.=+ 
T Consensus       136 W~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~  214 (302)
T PF14870_consen  136 WQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD  214 (302)
T ss_dssp             EEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred             eeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence             22233445678888899999999999887 6678885432 222233356789999999998765544 677 77776 


Q ss_pred             cCCCceeee--ecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEE-------EecccccCCCCccceeEEEEeeCCC
Q psy11524        234 ISSSSSSNV--TAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYL-------SMWSHSLDKPDTGSVYDLVWSSDAT  304 (323)
Q Consensus       234 ~~~~~~~~~--~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~s~~g~  304 (323)
                      ....+.-..  .........+..++|.+++     .+.+....+.+..       |.-....... ...++.+.|.+..+
T Consensus       215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~-----~~wa~gg~G~l~~S~DgGktW~~~~~~~~~-~~n~~~i~f~~~~~  288 (302)
T PF14870_consen  215 PDDGETWSEPIIPIKTNGYGILDLAYRPPN-----EIWAVGGSGTLLVSTDGGKTWQKDRVGENV-PSNLYRIVFVNPDK  288 (302)
T ss_dssp             TTEEEEE---B-TTSS--S-EEEEEESSSS------EEEEESTT-EEEESSTTSS-EE-GGGTTS-SS---EEEEEETTE
T ss_pred             CCCccccccccCCcccCceeeEEEEecCCC-----CEEEEeCCccEEEeCCCCccceECccccCC-CCceEEEEEcCCCc
Confidence            222221111  0012233458899999885     3333333343322       2222111222 45688999987654


Q ss_pred             eeEeeecCCeEEEE
Q psy11524        305 QIAGACANGSLLLG  318 (323)
Q Consensus       305 ~l~s~~~dg~i~~~  318 (323)
                       -...+.+|.+.-|
T Consensus       289 -gf~lG~~G~ll~~  301 (302)
T PF14870_consen  289 -GFVLGQDGVLLRY  301 (302)
T ss_dssp             -EEEE-STTEEEEE
T ss_pred             -eEEECCCcEEEEe
Confidence             4445568887655

>KOG2280|consensus

Probab=96.30  E-value=0.28  Score=44.50  Aligned_cols=168  Identities=14%  Similarity=0.160  Sum_probs=90.9

Q ss_pred             CceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCeeeec----CCCCccEEEEEEcCCCC
Q psy11524        144 CKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLD----KPDTGSVYDLVWSNDAT  219 (323)
Q Consensus       144 ~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~----~~~~~~v~~~~~~~~~~  219 (323)
                      -.|+   |++..|..+..+.-..+.+..+.|+.+..+|...-++++++|++-+..+...    ......|..+.+..+|-
T Consensus        64 ~~I~---If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV  140 (829)
T KOG2280|consen   64 PYIR---IFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV  140 (829)
T ss_pred             eeEE---EEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence            3466   9999999988877766689999999877666665557999999876644431    11233455555655663


Q ss_pred             EEEEEecCc--EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCC--CeEEEecccc------cCCC
Q psy11524        220 QIAGACANV--IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNR--DLYLSMWSHS------LDKP  289 (323)
Q Consensus       220 ~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~--~~~~~~~~~~------~~~~  289 (323)
                        +.-..++  +.+-+.........-.......+-.+-...+++.   ....+-+.+-  ...+......      +...
T Consensus       141 --avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~---~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~  215 (829)
T KOG2280|consen  141 --AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHR---QSTILLDVDVAVGLHICQVEESRVQLHALSWP  215 (829)
T ss_pred             --EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCC---cceeEEeechhhhhcccceecccccccccCCC
Confidence              3333444  4444443322111100011111112222222221   1111222210  0111111111      1111


Q ss_pred             CccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        290 DTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       290 ~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                       .+.+..++.||+.++|+--..+|.|.+-.+
T Consensus       216 -~~~~~ki~VS~n~~~laLyt~~G~i~~vs~  245 (829)
T KOG2280|consen  216 -NSSVVKISVSPNRRFLALYTETGKIWVVSI  245 (829)
T ss_pred             -CceEEEEEEcCCcceEEEEecCCcEEEEec
Confidence             367889999999999999999998877543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.29  E-value=0.45  Score=38.33  Aligned_cols=159  Identities=15%  Similarity=0.156  Sum_probs=92.6

Q ss_pred             eeccCCCeEEEEECCCCCEEEEEcCCCceEeeeE-EeCCCCeeeEeecC-CCceeEEEEecCCCEEEEEeCC-eEEEEeC
Q psy11524        118 WQAHDGLILKVAWCSSTDLILSGGEDCKYKASFV-WDTDGRQLYSSLTH-DHPISSLAWAPGGDMFAVGSYN-TLRLCDK  194 (323)
Q Consensus       118 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v-~d~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~  194 (323)
                      +.+-...+.++.|+|+.+.|.+......-.   | .+.+|..+..+.-. -...-.+.+..+|++.++--.+ .++++.+
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~i---VElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~v  157 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAI---VELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTV  157 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceE---EEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEE
Confidence            344556699999999988776666554443   3 34567777766421 2234567787666555444445 7877765


Q ss_pred             CCC--ee-------eec-CCC-CccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCc-eeeeecCCCC-------ccceEE
Q psy11524        195 VGW--SH-------SLD-KPD-TGSVYDLVWSNDATQIAGACANV-IHIFDISSSS-SSNVTAPLSH-------SHEITQ  254 (323)
Q Consensus       195 ~~~--~~-------~~~-~~~-~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~-~~~~~~~~~~-------~~~v~~  254 (323)
                      ...  ..       ..- ..+ +.....++|+|....|..+-+.. +.||.+..+. .+.......+       -..+.+
T Consensus       158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg  237 (316)
T COG3204         158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG  237 (316)
T ss_pred             cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence            422  11       111 112 45688999999888888888888 8887765332 1111001111       124667


Q ss_pred             EEEccCCCCccceEEEEeCCCCeEEEec
Q psy11524        255 LAVNQTGSLQERHVAFIDKNRDLYLSMW  282 (323)
Q Consensus       255 ~~~~p~g~~~d~~l~~~~~~~~~~~~~~  282 (323)
                      +.|++..   +..+.+.+.+..+...+.
T Consensus       238 l~~~~~~---~~LLVLS~ESr~l~Evd~  262 (316)
T COG3204         238 LEFNAIT---NSLLVLSDESRRLLEVDL  262 (316)
T ss_pred             ceecCCC---CcEEEEecCCceEEEEec
Confidence            7888765   255555555555444443

>PRK13684 Ycf48-like protein; Provisional

Probab=96.26  E-value=0.59  Score=39.38  Aligned_cols=145  Identities=16%  Similarity=0.206  Sum_probs=81.5

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEE-EeCCCCc-eeEe-eccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCC
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIK-PLSPNNK-ATKW-QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGR  157 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~-~~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~  157 (323)
                      ...+.++.+.|++.+++++ .. |.++ .++..+. -... ..-...+.++.+.++++.++++ ..|.+.   +=..++.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~-G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~---~~s~d~G  245 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SR-GNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIR---FNDPDDL  245 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CC-ceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEE---EccCCCC
Confidence            4578899999998777654 33 4444 3333332 1122 2234578899999998877665 457664   3223322


Q ss_pred             eeeE-eec----CCCceeEEEEecCCCEEEEEeCCeEEEEeCC-CCeeeec---CCCCccEEEEEEcCCCCEEEEEecCc
Q psy11524        158 QLYS-SLT----HDHPISSLAWAPGGDMFAVGSYNTLRLCDKV-GWSHSLD---KPDTGSVYDLVWSNDATQIAGACANV  228 (323)
Q Consensus       158 ~~~~-~~~----~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~-~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~  228 (323)
                      ...+ ...    ....+.++.+.|+++.++++..+.+.. ... +..-...   .......+.+.|..+++.+++| ..|
T Consensus       246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G  323 (334)
T PRK13684        246 ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRG  323 (334)
T ss_pred             CccccccCCccccccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCc
Confidence            2111 111    123578899999888777776664443 222 2222211   2233457788887777665544 455


Q ss_pred             -EEEEE
Q psy11524        229 -IHIFD  233 (323)
Q Consensus       229 -i~iwd  233 (323)
                       |--++
T Consensus       324 ~il~~~  329 (334)
T PRK13684        324 VLLRYV  329 (334)
T ss_pred             eEEEec
Confidence             55544

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.17  E-value=0.61  Score=38.70  Aligned_cols=188  Identities=15%  Similarity=0.147  Sum_probs=106.1

Q ss_pred             EEEEEEcCCCCeEEEEeeC-CeEEEEeCCCCc--eeEeeccCCCeEEEEECCC-CCEEEEEcCCCceEeeeEEeCC--CC
Q psy11524         84 VYSAAWSPDSNKVLLTQAK-SLVIKPLSPNNK--ATKWQAHDGLILKVAWCSS-TDLILSGGEDCKYKASFVWDTD--GR  157 (323)
Q Consensus        84 v~~~~~sp~~~~l~~~~~~-~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~i~v~d~~--~~  157 (323)
                      .....++.||+++++.... ...|-+.|+..+  +..+ .-.+ +..+  -|. .+.+.+.+.||++.   -..++  ++
T Consensus        97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei-~~PG-C~~i--yP~~~~~F~~lC~DGsl~---~v~Ld~~Gk  169 (342)
T PF06433_consen   97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI-DTPG-CWLI--YPSGNRGFSMLCGDGSLL---TVTLDADGK  169 (342)
T ss_dssp             GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE-EGTS-EEEE--EEEETTEEEEEETTSCEE---EEEETSTSS
T ss_pred             ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee-cCCC-EEEE--EecCCCceEEEecCCceE---EEEECCCCC
Confidence            3456889999998876532 246788887766  2222 2222 2222  232 24577888899988   76663  55


Q ss_pred             eeeEe----ecCCCc-eeEEEEecCCCEEEEEeC-CeEEEEeCCCCeeeecCC-------------CCccEEEEEEcCCC
Q psy11524        158 QLYSS----LTHDHP-ISSLAWAPGGDMFAVGSY-NTLRLCDKVGWSHSLDKP-------------DTGSVYDLVWSNDA  218 (323)
Q Consensus       158 ~~~~~----~~~~~~-v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~~~~~~-------------~~~~v~~~~~~~~~  218 (323)
                      .....    .....+ +..-++...+..++..+. |.|+-.|+.+........             ..+.-.-+++++..
T Consensus       170 ~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~  249 (342)
T PF06433_consen  170 EAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS  249 (342)
T ss_dssp             EEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT
T ss_pred             EeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecccc
Confidence            44222    111222 234455555555555555 699998887653321110             01223457788765


Q ss_pred             CEEEEEe--------cCc---EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEe-CCCCeEEEeccc
Q psy11524        219 TQIAGAC--------ANV---IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFID-KNRDLYLSMWSH  284 (323)
Q Consensus       219 ~~l~~~~--------~d~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~-~~~~~~~~~~~~  284 (323)
                      +.|++.-        .+.   |.++|+.+++.+..+   ....++.+++.+.+.+   -.|...+ .++.+.+++..+
T Consensus       250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri---~l~~~~~Si~Vsqd~~---P~L~~~~~~~~~l~v~D~~t  321 (342)
T PF06433_consen  250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARI---PLEHPIDSIAVSQDDK---PLLYALSAGDGTLDVYDAAT  321 (342)
T ss_dssp             TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEE---EEEEEESEEEEESSSS----EEEEEETTTTEEEEEETTT
T ss_pred             CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEE---eCCCccceEEEccCCC---cEEEEEcCCCCeEEEEeCcC
Confidence            5555432        233   888999999999873   2235677999998863   3454444 456688888776

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.04  E-value=0.27  Score=33.43  Aligned_cols=98  Identities=13%  Similarity=0.193  Sum_probs=61.6

Q ss_pred             EEEEEEcC---CC-CeEEEEeeCCeEEEEeCCCCceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCee
Q psy11524         84 VYSAAWSP---DS-NKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQL  159 (323)
Q Consensus        84 v~~~~~sp---~~-~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~  159 (323)
                      |++|++..   || +.|++|+.| ..|++|+-...+..+.. ...|.++.-... ..++.+..+|+|-   +|+-. ..+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D-~~IRvf~~~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVG---vY~~~-~Rl   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDD-FEIRVFKGDEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVG---VYDRS-QRL   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCC-cEEEEEeCCcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEE---EEeCc-cee
Confidence            56677654   33 467777666 59999998776666654 455667766654 6789999999999   99864 333


Q ss_pred             eEeecCCCceeEEEEec-C--CC-EEEEEeC-CeE
Q psy11524        160 YSSLTHDHPISSLAWAP-G--GD-MFAVGSY-NTL  189 (323)
Q Consensus       160 ~~~~~~~~~v~~~~~~p-~--~~-~l~~~~~-~~i  189 (323)
                      ...+... .+.++++.. +  |. .|++|-. +.|
T Consensus        75 WRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkv  108 (111)
T PF14783_consen   75 WRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKV  108 (111)
T ss_pred             eeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeE
Confidence            4444333 355555443 3  33 3555544 354

>KOG2377|consensus

Probab=95.97  E-value=0.51  Score=40.40  Aligned_cols=101  Identities=12%  Similarity=0.081  Sum_probs=69.9

Q ss_pred             ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCee---e--EeecCCCceeEEEEecCCCEEEEEeC-C-eEEEE
Q psy11524        120 AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQL---Y--SSLTHDHPISSLAWAPGGDMFAVGSY-N-TLRLC  192 (323)
Q Consensus       120 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~---~--~~~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~  192 (323)
                      ...++|.++.||+|.+.+|+--.+.+|.   +.+..+...   .  +.+.....|....|+.+ .-+|..+. | .++-.
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~---f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v  139 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVD---FCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQV  139 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEE---EEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEE
Confidence            3457999999999999999999999999   888732221   1  12223445889999865 55666665 5 55555


Q ss_pred             eCCCCeeeecCCCCccEEEEEEcCCCCEEEEE
Q psy11524        193 DKVGWSHSLDKPDTGSVYDLVWSNDATQIAGA  224 (323)
Q Consensus       193 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  224 (323)
                      +.....++..+.+...|.=-.|.++-+.++.+
T Consensus       140 ~pekrslRlVks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  140 LPEKRSLRLVKSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             chhhhhhhhhhhcccCccEEEEccccceEeee
Confidence            54445556666677778878888877654433

>KOG2079|consensus

Probab=95.94  E-value=0.04  Score=51.51  Aligned_cols=91  Identities=14%  Similarity=0.194  Sum_probs=65.0

Q ss_pred             CCCeEEEEeeCCeEEEEeCCCCceeE---eeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCC
Q psy11524         92 DSNKVLLTQAKSLVIKPLSPNNKATK---WQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDH  167 (323)
Q Consensus        92 ~~~~l~~~~~~~~~v~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~  167 (323)
                      .+..++.|++. |.+-..|..+.+..   -..-.++|++++|+.+|+.++.|-.+|.|.   +||.. ++..+.+..+..
T Consensus        98 ~~~~ivi~Ts~-ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~---v~D~~~~k~l~~i~e~~a  173 (1206)
T KOG2079|consen   98 VVVPIVIGTSH-GHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVT---VWDMHRAKILKVITEHGA  173 (1206)
T ss_pred             eeeeEEEEcCc-hhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEE---EEEccCCcceeeeeecCC
Confidence            45566666444 68877777665332   233467999999999999999999999999   99996 577777777666


Q ss_pred             ceeEEE---EecCCCEEEEEeC
Q psy11524        168 PISSLA---WAPGGDMFAVGSY  186 (323)
Q Consensus       168 ~v~~~~---~~p~~~~l~~~~~  186 (323)
                      +.+.+-   +..++..++++..
T Consensus       174 p~t~vi~v~~t~~nS~llt~D~  195 (1206)
T KOG2079|consen  174 PVTGVIFVGRTSQNSKLLTSDT  195 (1206)
T ss_pred             ccceEEEEEEeCCCcEEEEccC
Confidence            655544   3345556666666

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.93  E-value=0.7  Score=37.62  Aligned_cols=120  Identities=19%  Similarity=0.146  Sum_probs=70.8

Q ss_pred             CCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCeeee----------
Q psy11524        133 STDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSL----------  201 (323)
Q Consensus       133 ~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~~~~----------  201 (323)
                      .++.|+.|..+| +.   +++.. ......+. ....|..+...|+-+.+++-+++.++++++..-....          
T Consensus         6 ~~~~L~vGt~~G-l~---~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LY---VYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             CCCEEEEEECCC-EE---EEEecCCccceeEe-ecceEEEEEEecccCEEEEEcCCccEEEEchhhcccccccccccccc
Confidence            577899998888 77   99983 33333322 2334999999998888888777799999976321111          


Q ss_pred             -----cCCCCccEEEEE---EcCCCCEEEEEecCcEEEEEcCCC-----ceeeeecCCCCccceEEEEEccC
Q psy11524        202 -----DKPDTGSVYDLV---WSNDATQIAGACANVIHIFDISSS-----SSSNVTAPLSHSHEITQLAVNQT  260 (323)
Q Consensus       202 -----~~~~~~~v~~~~---~~~~~~~l~~~~~d~i~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~p~  260 (323)
                           .......+...+   -...+.+|+++....|.+|.....     +..+++   .....+..++|.++
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~---~lp~~~~~i~~~~~  149 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI---SLPDPPSSIAFLGN  149 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE---EcCCCcEEEEEeCC
Confidence                 111223344444   112334555555445666665442     344442   23367788888843

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.78  E-value=1.1  Score=38.48  Aligned_cols=186  Identities=10%  Similarity=0.014  Sum_probs=85.0

Q ss_pred             CCEEEEEc-CCCceEeeeEEeCC-----CCeeeEeec---C----CCceeEEEEecCCCEEEEEeC-------CeEEEEe
Q psy11524        134 TDLILSGG-EDCKYKASFVWDTD-----GRQLYSSLT---H----DHPISSLAWAPGGDMFAVGSY-------NTLRLCD  193 (323)
Q Consensus       134 ~~~l~~~~-~d~~i~~i~v~d~~-----~~~~~~~~~---~----~~~v~~~~~~p~~~~l~~~~~-------~~i~i~d  193 (323)
                      .++|+..+ ..++|.   |.|+.     .+..+.++.   +    -.....+-.-|+|+.++++-.       +.+.++|
T Consensus        87 Rr~Li~PgL~SsrIy---viD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD  163 (461)
T PF05694_consen   87 RRYLILPGLRSSRIY---VIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLD  163 (461)
T ss_dssp             S-EEEEEBTTT--EE---EEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-
T ss_pred             CCcEEeeeeccCcEE---EEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEc
Confidence            34555555 678888   99984     122233322   1    122334445678888776521       2577788


Q ss_pred             CCCCeee-ecC---CCCccEEEEEEcCCCCEEEEEec--------------------Cc-EEEEEcCCCceeeeecCCCC
Q psy11524        194 KVGWSHS-LDK---PDTGSVYDLVWSNDATQIAGACA--------------------NV-IHIFDISSSSSSNVTAPLSH  248 (323)
Q Consensus       194 ~~~~~~~-~~~---~~~~~v~~~~~~~~~~~l~~~~~--------------------d~-i~iwd~~~~~~~~~~~~~~~  248 (323)
                      -.+..+. ...   .....-+.+-|.|..+.+++...                    .. +.+||+.+.+.++++.+-..
T Consensus       164 ~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~  243 (461)
T PF05694_consen  164 GETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE  243 (461)
T ss_dssp             TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred             CccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence            7655443 111   12234567888888888887642                    34 99999999999998645444


Q ss_pred             ccceEEEEEccCCCCc--------cceEEEE-e-CCCC---eEEEeccccc---CCCC---------ccceeEEEEeeCC
Q psy11524        249 SHEITQLAVNQTGSLQ--------ERHVAFI-D-KNRD---LYLSMWSHSL---DKPD---------TGSVYDLVWSSDA  303 (323)
Q Consensus       249 ~~~v~~~~~~p~g~~~--------d~~l~~~-~-~~~~---~~~~~~~~~~---~~~~---------~~~v~~~~~s~~g  303 (323)
                      ......+.|..+-...        ...|..| . .++.   ..+.++....   ....         ..-|+.+..|.|.
T Consensus       244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD  323 (461)
T PF05694_consen  244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD  323 (461)
T ss_dssp             EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred             CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence            4456677776654311        1112222 2 1111   0111111100   0000         2347999999999


Q ss_pred             CeeE-eeecCCeEEEEEeec
Q psy11524        304 TQIA-GACANGSLLLGTIIQ  322 (323)
Q Consensus       304 ~~l~-s~~~dg~i~~~~l~~  322 (323)
                      ++|. ++-.+|.|+.|||.|
T Consensus       324 rfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  324 RFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             -EEEEEETTTTEEEEEE-SS
T ss_pred             CEEEEEcccCCcEEEEecCC
Confidence            9887 666799999999976

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.77  E-value=0.53  Score=43.76  Aligned_cols=28  Identities=7%  Similarity=0.080  Sum_probs=22.4

Q ss_pred             ccEEEEEEcCCCCEEEEEecCcEEEEEc
Q psy11524        207 GSVYDLVWSNDATQIAGACANVIHIFDI  234 (323)
Q Consensus       207 ~~v~~~~~~~~~~~l~~~~~d~i~iwd~  234 (323)
                      -.|..+.++|+|.+|+..+..+|.|..+
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~L  112 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLEL  112 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEe
Confidence            4688999999999999998888544443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.70  E-value=0.99  Score=38.62  Aligned_cols=132  Identities=16%  Similarity=0.125  Sum_probs=73.1

Q ss_pred             CCeEEEEECCCCCEEEEEc-----------CCC-ceEeeeEEeCC---CC--eeeEeecCCCceeEEEEecCCCEEEEEe
Q psy11524        123 GLILKVAWCSSTDLILSGG-----------EDC-KYKASFVWDTD---GR--QLYSSLTHDHPISSLAWAPGGDMFAVGS  185 (323)
Q Consensus       123 ~~v~~~~~~~~~~~l~~~~-----------~d~-~i~~i~v~d~~---~~--~~~~~~~~~~~v~~~~~~p~~~~l~~~~  185 (323)
                      .....|+|.++|+++++-.           ..+ .|.   +++-+   ++  ....+.........+++.++|  +++++
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~---~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~   88 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRIL---ILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT   88 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEE---EEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC
Confidence            3456889999998777653           223 566   66542   32  223343334456889999988  44444


Q ss_pred             CCeEEEE-eCCC------CeeeecC---C----CCccEEEEEEcCCCCEEEEEec-------------------Cc-EEE
Q psy11524        186 YNTLRLC-DKVG------WSHSLDK---P----DTGSVYDLVWSNDATQIAGACA-------------------NV-IHI  231 (323)
Q Consensus       186 ~~~i~i~-d~~~------~~~~~~~---~----~~~~v~~~~~~~~~~~l~~~~~-------------------d~-i~i  231 (323)
                      ...|..+ |..+      .......   .    +......++|.|||.+.++.+.                   .+ |.-
T Consensus        89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r  168 (367)
T TIGR02604        89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR  168 (367)
T ss_pred             CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence            5555544 5532      2111111   1    1234778999999986654441                   13 555


Q ss_pred             EEcCCCceeeeecCCCCccceEEEEEccCCC
Q psy11524        232 FDISSSSSSNVTAPLSHSHEITQLAVNQTGS  262 (323)
Q Consensus       232 wd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~  262 (323)
                      +|...++. ..  +.........++|+|+|+
T Consensus       169 ~~pdg~~~-e~--~a~G~rnp~Gl~~d~~G~  196 (367)
T TIGR02604       169 YNPDGGKL-RV--VAHGFQNPYGHSVDSWGD  196 (367)
T ss_pred             EecCCCeE-EE--EecCcCCCccceECCCCC
Confidence            55544432 22  222223456789999873

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1897|consensus

Probab=95.63  E-value=2.1  Score=40.52  Aligned_cols=212  Identities=12%  Similarity=0.094  Sum_probs=109.2

Q ss_pred             cceeEeeEeccC--CcceeeeeeccccccccceeeecC--------------CCCCEEEEEEcCCCCeEEEEeeCCeEEE
Q psy11524         44 DGTVINYPISPY--ISVLHSYAASHSWPQALSLCRTLN--------------VSPPVYSAAWSPDSNKVLLTQAKSLVIK  107 (323)
Q Consensus        44 ~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~v~~~~~sp~~~~l~~~~~~~~~v~  107 (323)
                      ...|.|+.++|.  +.....+++-|.|+........++              -...|.-..+--|..+|+++..+ |.+.
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgd-G~l~  608 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGD-GALL  608 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCC-ceEE
Confidence            567899999986  444446788899976554433221              23455566666677888887666 5665


Q ss_pred             Ee--CCCCc----eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecC--CC
Q psy11524        108 PL--SPNNK----ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPG--GD  179 (323)
Q Consensus       108 ~~--~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~--~~  179 (323)
                      .+  |..+.    .+...-...++.-=.|+..++.-+.+..|....   +|.-+++.+..-...+.--.-+.|+.+  ..
T Consensus       609 ~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~v---iY~~n~kLv~spls~kev~~~c~f~s~a~~d  685 (1096)
T KOG1897|consen  609 YFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTV---IYSSNGKLVYSPLSLKEVNHMCPFNSDAYPD  685 (1096)
T ss_pred             EEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEE---EEecCCcEEEeccchHHhhhhcccccccCCc
Confidence            44  43333    111112234454455665554434444465555   777766655442221111111223332  34


Q ss_pred             EEEEEeCCeEEEEeCC---CCeeeecCCCCccEEEEEEcCCCCEEEEEec-----------C---c-EEEEEcCCCceee
Q psy11524        180 MFAVGSYNTLRLCDKV---GWSHSLDKPDTGSVYDLVWSNDATQIAGACA-----------N---V-IHIFDISSSSSSN  241 (323)
Q Consensus       180 ~l~~~~~~~i~i~d~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d---~-i~iwd~~~~~~~~  241 (323)
                      .++++..+.+.+.-+.   .-..+. .+....++.+++.+....+.+.+.           .   . ++++|-++.+.+.
T Consensus       686 ~l~~~~~~~l~i~tid~iqkl~irt-vpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~  764 (1096)
T KOG1897|consen  686 SLASANGGALTIGTIDEIQKLHIRT-VPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLS  764 (1096)
T ss_pred             eEEEecCCceEEEEecchhhcceee-ecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEe
Confidence            4677666666555443   222222 234455667777764444433321           1   2 6777766666555


Q ss_pred             eecCCCCc--cceEEEEEccC
Q psy11524        242 VTAPLSHS--HEITQLAVNQT  260 (323)
Q Consensus       242 ~~~~~~~~--~~v~~~~~~p~  260 (323)
                      ...+....  ..+.+..|..|
T Consensus       765 ~hef~~~E~~~Si~s~~~~~d  785 (1096)
T KOG1897|consen  765 SHEFERNETALSIISCKFTDD  785 (1096)
T ss_pred             eccccccceeeeeeeeeecCC
Confidence            42222221  23444456655

>KOG2247|consensus

Probab=95.62  E-value=0.0021  Score=54.51  Aligned_cols=135  Identities=19%  Similarity=0.167  Sum_probs=96.5

Q ss_pred             CCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC--CeEEEEeCCCCee
Q psy11524        122 DGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY--NTLRLCDKVGWSH  199 (323)
Q Consensus       122 ~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--~~i~i~d~~~~~~  199 (323)
                      -.......|-|.+.-++.++.+..+.   .||-.++...... .++....++|..++..++....  +.+++||+.....
T Consensus        34 lv~pi~~~w~~e~~nlavaca~tiv~---~YD~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt  109 (615)
T KOG2247|consen   34 LVGPIIHRWRPEGHNLAVACANTIVI---YYDKAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT  109 (615)
T ss_pred             ccccceeeEecCCCceehhhhhhHHH---hhhhhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence            33445667888777788888888888   9998766655543 3455677899988888766655  5999999875432


Q ss_pred             e-ecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCC
Q psy11524        200 S-LDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGS  262 (323)
Q Consensus       200 ~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~  262 (323)
                      + ...+....-.-+.|++.+..++.+...+ +.|++..+.+.+..  .-.|...+.++++.+.+.
T Consensus       110 qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv--~Gkh~RRgtq~av~lEd~  172 (615)
T KOG2247|consen  110 QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV--MGKHQRRGTQIAVTLEDY  172 (615)
T ss_pred             HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhh--hcccccceeEEEecccce
Confidence            2 2222222233378999888899998888 99999887665554  334888899999998763

>KOG4499|consensus

Probab=95.61  E-value=0.72  Score=35.88  Aligned_cols=134  Identities=11%  Similarity=0.065  Sum_probs=81.5

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeC--------CeEEEEeCCCCceeEeeccCCCeEEEEECCCCCEEEEE-cCCCceEeee
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAK--------SLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSG-GEDCKYKASF  150 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~i~  150 (323)
                      .....+.-..+|+|++.+-...+        .|.++.|-....+..+...-+--+.++|+.+.+.+... +.+-+|.   
T Consensus       107 kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~---  183 (310)
T KOG4499|consen  107 KKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD---  183 (310)
T ss_pred             HhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEe---
Confidence            45677778889999996543332        24567776665544444444445678999887766544 4456666   


Q ss_pred             EEeC--C------CCeeeEeec----CCCceeEEEEecCCCEEEEEeCC-eEEEEeCC-CCeeeecCCCCccEEEEEEcC
Q psy11524        151 VWDT--D------GRQLYSSLT----HDHPISSLAWAPGGDMFAVGSYN-TLRLCDKV-GWSHSLDKPDTGSVYDLVWSN  216 (323)
Q Consensus       151 v~d~--~------~~~~~~~~~----~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~-~~~~~~~~~~~~~v~~~~~~~  216 (323)
                      -||.  .      .+.+..+..    .....-.++..-+|.++++.-.+ +|.-.|.. ++.+..+.-....+++++|--
T Consensus       184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            6773  2      222333322    11122345556678777666665 99999976 444444444567899999963

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.60  E-value=0.45  Score=43.15  Aligned_cols=94  Identities=17%  Similarity=0.164  Sum_probs=60.0

Q ss_pred             ceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecC--CCCccEEEEEEc--CCCCEEEEEecCc-EEEEEcC------
Q psy11524        168 PISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDK--PDTGSVYDLVWS--NDATQIAGACANV-IHIFDIS------  235 (323)
Q Consensus       168 ~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~--~~~~~v~~~~~~--~~~~~l~~~~~d~-i~iwd~~------  235 (323)
                      .+.-+.-+.-++..++.+.+ .+.|||.++.......  ...+.|.++.|.  |+|+.+++.+-.. |.+|--.      
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            34444445445444443345 9999998865443222  347789999997  5888888888888 8888521      


Q ss_pred             ---CCceeeeecCCCCc-cceEEEEEccCC
Q psy11524        236 ---SSSSSNVTAPLSHS-HEITQLAVNQTG  261 (323)
Q Consensus       236 ---~~~~~~~~~~~~~~-~~v~~~~~~p~g  261 (323)
                         +..++..+.+..+. .+|.+..|.++|
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G  140 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDG  140 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEecCC
Confidence               22334443333433 578889999986

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1897|consensus

Probab=95.57  E-value=2.2  Score=40.37  Aligned_cols=235  Identities=11%  Similarity=0.071  Sum_probs=126.0

Q ss_pred             cCCCCCEEEEEEcCC----CCeEEEEe--eCCeEEEEeCCCCc-----eeEeeccCCCeEEEE--ECCC-CCEEEEEcCC
Q psy11524         78 LNVSPPVYSAAWSPD----SNKVLLTQ--AKSLVIKPLSPNNK-----ATKWQAHDGLILKVA--WCSS-TDLILSGGED  143 (323)
Q Consensus        78 ~~~~~~v~~~~~sp~----~~~l~~~~--~~~~~v~~~~~~~~-----~~~~~~~~~~v~~~~--~~~~-~~~l~~~~~d  143 (323)
                      +..-++|..++.-..    +..+++++  ..+|.+++....=+     ...+++ ...++.+.  +.++ .++|+.+-.+
T Consensus       350 ~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~  428 (1096)
T KOG1897|consen  350 FVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFIS  428 (1096)
T ss_pred             cccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEecc
Confidence            334568888876432    23555554  34578988865433     223333 44566666  4432 2355544333


Q ss_pred             CceEeeeEEeCCCCeee-EeecCCCceeEEEEec-CCCEEEEEeCCeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEE
Q psy11524        144 CKYKASFVWDTDGRQLY-SSLTHDHPISSLAWAP-GGDMFAVGSYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQI  221 (323)
Q Consensus       144 ~~i~~i~v~d~~~~~~~-~~~~~~~~v~~~~~~p-~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l  221 (323)
                      . -+   +..+.++... ...+.......+..|- .++.++=...+.|++++-.+......  ..+.++..+.+.+...+
T Consensus       429 e-Tr---vl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~~~~~~W~--~p~~~ti~~~~~n~sqV  502 (1096)
T KOG1897|consen  429 E-TR---VLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSAGLRSEWR--PPGKITIGVVSANASQV  502 (1096)
T ss_pred             c-eE---EEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcchhhhhccc--CCCceEEEEEeecceEE
Confidence            3 33   5566544111 1122223334444443 45555555566788888663322222  23445555555566678


Q ss_pred             EEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCC--CccceEEE--EeCCCCeEEEecccc-----cCCC--
Q psy11524        222 AGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGS--LQERHVAF--IDKNRDLYLSMWSHS-----LDKP--  289 (323)
Q Consensus       222 ~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~--~~d~~l~~--~~~~~~~~~~~~~~~-----~~~~--  289 (323)
                      +.++.++ +...++..+..... ........|.|+.++|-|.  .....+++  |+....+..+.....     ....  
T Consensus       503 vvA~~~~~l~y~~i~~~~l~e~-~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~  581 (1096)
T KOG1897|consen  503 VVAGGGLALFYLEIEDGGLREV-SHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEI  581 (1096)
T ss_pred             EEecCccEEEEEEeeccceeee-eeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCc
Confidence            8888778 77777776653222 1244567899999998754  21224444  443332222222111     0111  


Q ss_pred             CccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        290 DTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       290 ~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      =...|.-..+-.|+.+|.++..||.+..|-+
T Consensus       582 iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~  612 (1096)
T KOG1897|consen  582 IPRSILLTTFEGDIHYLLVALGDGALLYFVL  612 (1096)
T ss_pred             cchheeeEEeeccceEEEEEcCCceEEEEEE
Confidence            0234555566667889999999999887755

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.50  E-value=0.79  Score=41.64  Aligned_cols=108  Identities=20%  Similarity=0.335  Sum_probs=67.0

Q ss_pred             CCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeec--CCCceeEEEEe--cCCCEEEEEeCC-eEEEEeC-C-
Q psy11524        123 GLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLT--HDHPISSLAWA--PGGDMFAVGSYN-TLRLCDK-V-  195 (323)
Q Consensus       123 ~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~--~~~~v~~~~~~--p~~~~l~~~~~~-~i~i~d~-~-  195 (323)
                      ..+.-+.-+.-++..++-+....+.   |||.++..+..-..  ....|.++.|.  |+|+.+++.+.+ .|.+|.- + 
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~Lt---IWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~  106 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELT---IWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY  106 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEE---EEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch
Confidence            3444444455455444444456677   99998666544333  37789999986  578887777774 8888752 2 


Q ss_pred             -----CC---eee--ecCCCC-ccEEEEEEcCCCCEEEEEecCcEEEEEc
Q psy11524        196 -----GW---SHS--LDKPDT-GSVYDLVWSNDATQIAGACANVIHIFDI  234 (323)
Q Consensus       196 -----~~---~~~--~~~~~~-~~v~~~~~~~~~~~l~~~~~d~i~iwd~  234 (323)
                           +.   .+.  -+..++ .+|.+..|.++|. |++|+.+.+.|+|-
T Consensus       107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~sGNqlfv~dk  155 (631)
T PF12234_consen  107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGSGNQLFVFDK  155 (631)
T ss_pred             hhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEeCCEEEEECC
Confidence                 11   111  122233 5788999999994 55555455888873

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.48  E-value=0.66  Score=40.37  Aligned_cols=139  Identities=17%  Similarity=0.225  Sum_probs=80.7

Q ss_pred             CCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCC-------CEEEEEcCCCceEeeeEEeCC--CCee
Q psy11524         91 PDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSST-------DLILSGGEDCKYKASFVWDTD--GRQL  159 (323)
Q Consensus        91 p~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~-------~~l~~~~~d~~i~~i~v~d~~--~~~~  159 (323)
                      .+...|+..+.....++-.|...+  +-.+..|...  -+.|.|+.       ..-+.|-.+..|.   -.|.+  +..+
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svF---rIDPR~~gNKi  551 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVF---RIDPRARGNKI  551 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceE---EecccccCCce
Confidence            344445444444345655565443  4455555554  46777753       1233444455555   66663  4433


Q ss_pred             eEeec----CCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCcEEEEE
Q psy11524        160 YSSLT----HDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFD  233 (323)
Q Consensus       160 ~~~~~----~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~i~iwd  233 (323)
                      .....    .+....+..-.. +-++|+++. |-|++||.-+. ....+.+....|..+..+.+|+++++.+..-+.+-|
T Consensus       552 ~v~esKdY~tKn~Fss~~tTe-sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d  630 (776)
T COG5167         552 KVVESKDYKTKNKFSSGMTTE-SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTD  630 (776)
T ss_pred             eeeeehhcccccccccccccc-CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEe
Confidence            33221    112233333333 347888888 59999995443 333455567789999999999999888876666766


Q ss_pred             cC
Q psy11524        234 IS  235 (323)
Q Consensus       234 ~~  235 (323)
                      ++
T Consensus       631 ~~  632 (776)
T COG5167         631 VP  632 (776)
T ss_pred             cc
Confidence            53

>KOG3630|consensus

Probab=95.43  E-value=0.44  Score=45.43  Aligned_cols=136  Identities=13%  Similarity=0.076  Sum_probs=86.3

Q ss_pred             CceeEEEEecCCCEEEEEeC--C-eEEEEeCCCCee------e------ecCCCCccEEEEEEcCCCC-EEEEEecCc-E
Q psy11524        167 HPISSLAWAPGGDMFAVGSY--N-TLRLCDKVGWSH------S------LDKPDTGSVYDLVWSNDAT-QIAGACANV-I  229 (323)
Q Consensus       167 ~~v~~~~~~p~~~~l~~~~~--~-~i~i~d~~~~~~------~------~~~~~~~~v~~~~~~~~~~-~l~~~~~d~-i  229 (323)
                      .++..+...+|+...++...  | .|+.||++.-+.      .      +.........++.|+|.-. ..+....|. |
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            45666777778776444433  5 899999864211      1      1111233467888998532 345566677 8


Q ss_pred             EEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCC---CccceeEEEEeeC
Q psy11524        230 HIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKP---DTGSVYDLVWSSD  302 (323)
Q Consensus       230 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~---~~~~v~~~~~s~~  302 (323)
                      ++.-+.......+  -.......++++|+|.|    ..+.+|...|.+.-|.....    +...   ....|.+++|-..
T Consensus       181 ~V~~~~~~~~~v~--s~p~t~~~Tav~WSprG----KQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t  254 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVT--SFPVTNSQTAVLWSPRG----KQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLST  254 (1405)
T ss_pred             hhhhhhhhhhhhc--ccCcccceeeEEecccc----ceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecc
Confidence            8876654332222  12345678999999999    89999999998876655432    1111   1367999999887


Q ss_pred             CCeeEe
Q psy11524        303 ATQIAG  308 (323)
Q Consensus       303 g~~l~s  308 (323)
                      ..+|+.
T Consensus       255 ~eflvv  260 (1405)
T KOG3630|consen  255 QEFLVV  260 (1405)
T ss_pred             eeEEEE
Confidence            777764

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=95.21  E-value=0.13  Score=43.87  Aligned_cols=157  Identities=13%  Similarity=0.062  Sum_probs=85.1

Q ss_pred             eecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCeeee--c-CCCCc----cEE-EEEEcCCCCEEEEEecCc-EEEE
Q psy11524        162 SLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSL--D-KPDTG----SVY-DLVWSNDATQIAGACANV-IHIF  232 (323)
Q Consensus       162 ~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~~~~--~-~~~~~----~v~-~~~~~~~~~~l~~~~~d~-i~iw  232 (323)
                      +......+..+-..|||+.+..-+..++.++++.++....  + ....+    .|+ .+..-..|.-|++++.|| |.-|
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQW  295 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQW  295 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeee
Confidence            4445567788889999999888777788888876543321  1 11111    122 122233566788889999 7655


Q ss_pred             -EcCCCceee-e-ec-CCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc---cCCCCccceeEEEEeeCCCe
Q psy11524        233 -DISSSSSSN-V-TA-PLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---LDKPDTGSVYDLVWSSDATQ  305 (323)
Q Consensus       233 -d~~~~~~~~-~-~~-~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~  305 (323)
                       |++.+.... . .+ +.-...++.-+  .|+.+  .+-....+.+|....+.....   ....-.....-+++||.+.+
T Consensus       296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l--~pe~~--rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~  371 (733)
T COG4590         296 FDVRRDGQPHLNHIRNFKLAPAEVQFL--LPETN--RKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAY  371 (733)
T ss_pred             eeeecCCCCcceeeeccccCcccceee--ccccc--cceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccch
Confidence             665432211 0 00 01111122211  22211  133444455555554433221   11111345677899999998


Q ss_pred             eEeeecCCeEEEEEeecC
Q psy11524        306 IAGACANGSLLLGTIIQR  323 (323)
Q Consensus       306 l~s~~~dg~i~~~~l~~~  323 (323)
                      |++- +.|.|+++.+.+|
T Consensus       372 Ll~e-~~gki~~~~l~Nr  388 (733)
T COG4590         372 LLSE-DQGKIRLAQLENR  388 (733)
T ss_pred             heee-cCCceEEEEecCC
Confidence            8875 4678999988765

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.21  E-value=0.62  Score=43.36  Aligned_cols=72  Identities=10%  Similarity=0.207  Sum_probs=50.4

Q ss_pred             CCceeEEEEecCCCEEEEEeCCeEEEEeCCC-----------C-ee---e-------ecCCCCccEEEEEEcCC---CCE
Q psy11524        166 DHPISSLAWAPGGDMFAVGSYNTLRLCDKVG-----------W-SH---S-------LDKPDTGSVYDLVWSND---ATQ  220 (323)
Q Consensus       166 ~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~-----------~-~~---~-------~~~~~~~~v~~~~~~~~---~~~  220 (323)
                      ...|..+.++|+|++++..+...|.|..+..           . .+   .       ........|..+.|+|.   +..
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            3468899999999999888875444444321           1 01   0       01123456899999995   578


Q ss_pred             EEEEecCc-EEEEEcCCC
Q psy11524        221 IAGACANV-IHIFDISSS  237 (323)
Q Consensus       221 l~~~~~d~-i~iwd~~~~  237 (323)
                      |++-+.|+ +++||+...
T Consensus       164 l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEEecCCEEEEEecCCC
Confidence            99999999 999998753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG4499|consensus

Probab=95.18  E-value=1.1  Score=34.83  Aligned_cols=133  Identities=10%  Similarity=-0.002  Sum_probs=80.8

Q ss_pred             CCCeEEEEECCCCCEEEEEcCC---------CceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC-C-eEE
Q psy11524        122 DGLILKVAWCSSTDLILSGGED---------CKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-N-TLR  190 (323)
Q Consensus       122 ~~~v~~~~~~~~~~~l~~~~~d---------~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~  190 (323)
                      ..+.+.-..+|+|++++-.-.|         |.++   .|-...+. ..+...-.--+.++|+.+.+.+..-.. + +|.
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly---~~~~~h~v-~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~  183 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELY---SWLAGHQV-ELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD  183 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEE---EeccCCCc-eeeehhccCCccccccccCcEEEEEccCceEEe
Confidence            3455666778999984422222         3333   55444322 222223334467899988888777766 6 887


Q ss_pred             EEe--CCCCee------e-ec--CC-CCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEE
Q psy11524        191 LCD--KVGWSH------S-LD--KP-DTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAV  257 (323)
Q Consensus       191 i~d--~~~~~~------~-~~--~~-~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  257 (323)
                      -||  ..+..+      - ..  .+ ..-....++...+|++.++.-..+ |...|..+|+.+.++++  ....+++++|
T Consensus       184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl--Pt~qitsccF  261 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL--PTPQITSCCF  261 (310)
T ss_pred             eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc--CCCceEEEEe
Confidence            787  433211      0 11  11 111234456667887777777777 99999999999998534  3668899999


Q ss_pred             ccC
Q psy11524        258 NQT  260 (323)
Q Consensus       258 ~p~  260 (323)
                      --.
T Consensus       262 gGk  264 (310)
T KOG4499|consen  262 GGK  264 (310)
T ss_pred             cCC
Confidence            643

>KOG1916|consensus

Probab=95.07  E-value=0.028  Score=51.55  Aligned_cols=113  Identities=18%  Similarity=0.150  Sum_probs=67.6

Q ss_pred             eeccCCCeEEEEECCC-CCEEEEEcCCCceEeeeEEeCC---CCeeeE-----eecCCCceeEEEEec---CCCEEEEEe
Q psy11524        118 WQAHDGLILKVAWCSS-TDLILSGGEDCKYKASFVWDTD---GRQLYS-----SLTHDHPISSLAWAP---GGDMFAVGS  185 (323)
Q Consensus       118 ~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~i~v~d~~---~~~~~~-----~~~~~~~v~~~~~~p---~~~~l~~~~  185 (323)
                      .++..+.+..+.|... ...++  ..-|.+.   ||+++   |+....     .......+.-+.|.|   +..++..+-
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lf---Vy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~  202 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELF---VYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGL  202 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhh---eeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeecc
Confidence            4567788888888542 22222  2234555   99983   443322     233444556667766   444555555


Q ss_pred             CC-eEEEEeCCCCeeeecCCCCccEEEE-----------EEcCCCCEEEEEecCc-EEEEEcC
Q psy11524        186 YN-TLRLCDKVGWSHSLDKPDTGSVYDL-----------VWSNDATQIAGACANV-IHIFDIS  235 (323)
Q Consensus       186 ~~-~i~i~d~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~l~~~~~d~-i~iwd~~  235 (323)
                      .+ .+++..........+.+|..++..+           ..||||+.++..+.|| ++.|.+.
T Consensus       203 ~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  203 KGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             CCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            54 7777665543334444465554433           3789999999999999 8888653

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=94.88  E-value=0.098  Score=28.02  Aligned_cols=25  Identities=32%  Similarity=0.505  Sum_probs=19.5

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCC
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKS  103 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~  103 (323)
                      .....-....|||||++|+.++...
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~   30 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRN   30 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT
T ss_pred             cCCccccCEEEecCCCEEEEEecCC
Confidence            3566788999999999999998765

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.81  E-value=0.94  Score=31.95  Aligned_cols=109  Identities=6%  Similarity=-0.030  Sum_probs=65.6

Q ss_pred             EEEecCCCEEEEEeC-CeEEEEeCCCCee--------eecCCCCccEEEEEEcC-----CCCEEEEEecCcEEEEEcCCC
Q psy11524        172 LAWAPGGDMFAVGSY-NTLRLCDKVGWSH--------SLDKPDTGSVYDLVWSN-----DATQIAGACANVIHIFDISSS  237 (323)
Q Consensus       172 ~~~~p~~~~l~~~~~-~~i~i~d~~~~~~--------~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~i~iwd~~~~  237 (323)
                      -.|......|+.++. ++|.|++......        ..+......|++++--+     +...|+.|+...+..||+...
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N   83 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENN   83 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccC
Confidence            345555556777777 5999998653211        11122345566665443     345777887777999999887


Q ss_pred             ceeeeecCCCCccceEEEEEccCCC--------CccceEEEEeCCCCeEEEecc
Q psy11524        238 SSSNVTAPLSHSHEITQLAVNQTGS--------LQERHVAFIDKNRDLYLSMWS  283 (323)
Q Consensus       238 ~~~~~~~~~~~~~~v~~~~~~p~g~--------~~d~~l~~~~~~~~~~~~~~~  283 (323)
                      ..+..   ......+.++.+-.-+.        +.+..|.-++.+|...+|.+.
T Consensus        84 ~d~Fy---ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt  134 (136)
T PF14781_consen   84 SDLFY---KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT  134 (136)
T ss_pred             chhhh---hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence            66552   44456677776643222        333455555677777777653

>KOG2444|consensus

Probab=94.80  E-value=0.23  Score=38.25  Aligned_cols=99  Identities=12%  Similarity=0.092  Sum_probs=54.1

Q ss_pred             CCeEEEEeeCCeEEEEeCCCCc--eeEe-eccCCCeEE-EEECCCCCEEEEEcCCCceEeeeEEeCCC-CeeeEeecCC-
Q psy11524         93 SNKVLLTQAKSLVIKPLSPNNK--ATKW-QAHDGLILK-VAWCSSTDLILSGGEDCKYKASFVWDTDG-RQLYSSLTHD-  166 (323)
Q Consensus        93 ~~~l~~~~~~~~~v~~~~~~~~--~~~~-~~~~~~v~~-~~~~~~~~~l~~~~~d~~i~~i~v~d~~~-~~~~~~~~~~-  166 (323)
                      +..+++|+.+ |.|++|..+..  .... ......|.+ +.-..++.+..+++.+|.|+   .|++.. +.+.....|. 
T Consensus        70 ~~~~~vG~~d-g~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir---~~n~~p~k~~g~~g~h~~  145 (238)
T KOG2444|consen   70 SAKLMVGTSD-GAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIR---ACNIKPNKVLGYVGQHNF  145 (238)
T ss_pred             CceEEeeccc-ceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCcee---eeccccCceeeeeccccC
Confidence            3456666555 68887776532  1111 111222222 22222456888999999999   999974 4444444454 


Q ss_pred             CceeEEEEecCCCEEEEE--eCC-eEEEEeCC
Q psy11524        167 HPISSLAWAPGGDMFAVG--SYN-TLRLCDKV  195 (323)
Q Consensus       167 ~~v~~~~~~p~~~~l~~~--~~~-~i~i~d~~  195 (323)
                      .++.....+..++.++++  +.+ .++.|++.
T Consensus       146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             CCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            344444444445555555  444 66666654

>KOG4460|consensus

Probab=94.78  E-value=0.85  Score=39.85  Aligned_cols=90  Identities=7%  Similarity=0.104  Sum_probs=48.9

Q ss_pred             cEEEEEEcCCCCEEEEEecCcEEEEEcC-CCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccccc
Q psy11524        208 SVYDLVWSNDATQIAGACANVIHIFDIS-SSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSL  286 (323)
Q Consensus       208 ~v~~~~~~~~~~~l~~~~~d~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~~  286 (323)
                      .|..+..++.|..++..+.+||.+..+. ....-..  +......|.|-.+.-+.     .           ++.-..  
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~--~eDgk~~v~CRt~~i~~-----~-----------~ftss~--  164 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSE--FEDGKSTVNCRTTPVAE-----R-----------FFTSST--  164 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccce--ecCCCceEEEEeecccc-----e-----------eeccCC--
Confidence            4778888999999999998984443331 1111111  22222333333322221     1           111111  


Q ss_pred             CCCCccceeEEEEeeCC---CeeEeeecCCeEEEEEee
Q psy11524        287 DKPDTGSVYDLVWSSDA---TQIAGACANGSLLLGTII  321 (323)
Q Consensus       287 ~~~~~~~v~~~~~s~~g---~~l~s~~~dg~i~~~~l~  321 (323)
                          .-.+...+|+|+.   .+|+.-+.|.+|++|++.
T Consensus       165 ----~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS  198 (741)
T KOG4460|consen  165 ----SLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLS  198 (741)
T ss_pred             ----ceeeeeccccCCccCCceEEEEecCcEEEEEecC
Confidence                3345667777775   467777778888888763

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.74  E-value=0.15  Score=27.84  Aligned_cols=31  Identities=29%  Similarity=0.288  Sum_probs=23.7

Q ss_pred             ccEEEEEEcCCC---CEEEEEecCc-EEEEEcCCC
Q psy11524        207 GSVYDLVWSNDA---TQIAGACANV-IHIFDISSS  237 (323)
Q Consensus       207 ~~v~~~~~~~~~---~~l~~~~~d~-i~iwd~~~~  237 (323)
                      +.++++.|+|+.   .+|+.+-.-+ +.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            358999999854   4676666667 999999853

It contains a characteristic DLL sequence motif.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.73  E-value=1.8  Score=34.74  Aligned_cols=179  Identities=13%  Similarity=0.130  Sum_probs=93.5

Q ss_pred             eEEEEECCCCCEEEEEcCCC--ceEeeeEEeCCCCeeeEeecCCCc--eeEEEEecCCCEEEEEeC--CeEEEEeCCCCe
Q psy11524        125 ILKVAWCSSTDLILSGGEDC--KYKASFVWDTDGRQLYSSLTHDHP--ISSLAWAPGGDMFAVGSY--NTLRLCDKVGWS  198 (323)
Q Consensus       125 v~~~~~~~~~~~l~~~~~d~--~i~~i~v~d~~~~~~~~~~~~~~~--v~~~~~~p~~~~l~~~~~--~~i~i~d~~~~~  198 (323)
                      ...+.|..+|.++-+.+.-|  .|+   .+|+.+..+......+..  --.++..  +..|.--..  +...+||..+..
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~---~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~  121 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLR---KVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK  121 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEE---EEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEE---EEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce
Confidence            45788877888888888776  556   888864443322222222  2234444  345555555  489999988653


Q ss_pred             eeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccc---eEEEEEccCCC-----CccceEE
Q psy11524        199 HSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHE---ITQLAVNQTGS-----LQERHVA  269 (323)
Q Consensus       199 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~~p~g~-----~~d~~l~  269 (323)
                      ........+.=..++  .+|+.|+.+.... |+++|..+.+....+.......+   ++.+.|- +|.     .....|+
T Consensus       122 ~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~  198 (264)
T PF05096_consen  122 KIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIV  198 (264)
T ss_dssp             EEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEE
T ss_pred             EEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEE
Confidence            332222333444555  4667777766666 99999988877766434433333   3445554 332     1223444


Q ss_pred             EEeCCC-CeE-EEecccc---c--CC---CCccceeEEEEeeCCC-eeEeeec
Q psy11524        270 FIDKNR-DLY-LSMWSHS---L--DK---PDTGSVYDLVWSSDAT-QIAGACA  311 (323)
Q Consensus       270 ~~~~~~-~~~-~~~~~~~---~--~~---~~~~~v~~~~~s~~g~-~l~s~~~  311 (323)
                      ..|... .+. ..++...   .  ..   ....-.+.+|+.|..+ +++||-.
T Consensus       199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence            444443 332 3333332   0  01   1135689999998876 4556543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PHA02713 hypothetical protein; Provisional

Probab=94.68  E-value=2.4  Score=38.59  Aligned_cols=95  Identities=8%  Similarity=-0.006  Sum_probs=45.4

Q ss_pred             CCCEEEEEcCC-C--ceEeeeEEeCCCCeeeEeecCCCcee-EEEEecCCCEEEEEeCC------eEEEEeCCCCeeeec
Q psy11524        133 STDLILSGGED-C--KYKASFVWDTDGRQLYSSLTHDHPIS-SLAWAPGGDMFAVGSYN------TLRLCDKVGWSHSLD  202 (323)
Q Consensus       133 ~~~~l~~~~~d-~--~i~~i~v~d~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~~~~~~------~i~i~d~~~~~~~~~  202 (323)
                      ++...+.|+.+ +  ....++.||+....-..+..-..+.. .....-+|+..+.|+.+      .+..||.....-...
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~  382 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML  382 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence            56677777753 1  23344588986544333322111111 11122357777777752      478899775443332


Q ss_pred             CCCCccEEE-EEEcCCCCEEEEEecC
Q psy11524        203 KPDTGSVYD-LVWSNDATQIAGACAN  227 (323)
Q Consensus       203 ~~~~~~v~~-~~~~~~~~~l~~~~~d  227 (323)
                      .....+... .+..-+|+..+.|+.+
T Consensus       383 ~~mp~~r~~~~~~~~~g~IYviGG~~  408 (557)
T PHA02713        383 PDMPIALSSYGMCVLDQYIYIIGGRT  408 (557)
T ss_pred             CCCCcccccccEEEECCEEEEEeCCC
Confidence            222111111 1112267766766643

>KOG2444|consensus

Probab=94.64  E-value=0.17  Score=38.97  Aligned_cols=100  Identities=12%  Similarity=0.141  Sum_probs=57.1

Q ss_pred             CCEEEEEcCCCceEeeeEEeCC--CCeeeEeecCCCceeEE-EEecCCCEEEEEeCC-eEEEEeCC-CCeeeecCCCC-c
Q psy11524        134 TDLILSGGEDCKYKASFVWDTD--GRQLYSSLTHDHPISSL-AWAPGGDMFAVGSYN-TLRLCDKV-GWSHSLDKPDT-G  207 (323)
Q Consensus       134 ~~~l~~~~~d~~i~~i~v~d~~--~~~~~~~~~~~~~v~~~-~~~p~~~~l~~~~~~-~i~i~d~~-~~~~~~~~~~~-~  207 (323)
                      +..++.|+.+|.|.   +|...  +............+.++ .-..++.+..+++.+ .|+.|++. .+.+-....|. .
T Consensus        70 ~~~~~vG~~dg~v~---~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~  146 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVY---VFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE  146 (238)
T ss_pred             CceEEeecccceEE---EecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC
Confidence            45788999999998   77764  33222222222233322 222345566666665 99999976 44444444455 4


Q ss_pred             cEEEEEEcCCCCEEEEE--ecCc-EEEEEcCC
Q psy11524        208 SVYDLVWSNDATQIAGA--CANV-IHIFDISS  236 (323)
Q Consensus       208 ~v~~~~~~~~~~~l~~~--~~d~-i~iwd~~~  236 (323)
                      ++.....+..++.++.+  +.|. ++.|++..
T Consensus       147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  147 SGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            45555555555566655  5566 67776553

>KOG2377|consensus

Probab=94.53  E-value=2.1  Score=36.89  Aligned_cols=132  Identities=13%  Similarity=0.093  Sum_probs=81.7

Q ss_pred             eEEEEecCCCEEEEEeCCeEEEEeCCCC----eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeee-
Q psy11524        170 SSLAWAPGGDMFAVGSYNTLRLCDKVGW----SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVT-  243 (323)
Q Consensus       170 ~~~~~~p~~~~l~~~~~~~i~i~d~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~-  243 (323)
                      +.+-|...++.+++...+.+.-|-..+.    .+.......++|.++.||+|.+.||+--.+. |.+++....+..... 
T Consensus        26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~  105 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT  105 (657)
T ss_pred             cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence            3445554444444444444444444322    3334445677999999999999999999999 999987443332221 


Q ss_pred             -cCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----cCCCCccceeEEEEeeCCCeeE
Q psy11524        244 -APLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----LDKPDTGSVYDLVWSSDATQIA  307 (323)
Q Consensus       244 -~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g~~l~  307 (323)
                       +.......|....|+..     ..+++....| +.++.+...     ..+.|...|+=..|.++-+.+.
T Consensus       106 ~~ck~k~~~IlGF~W~~s-----~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  106 QECKTKNANILGFCWTSS-----TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             HHhccCcceeEEEEEecC-----eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence             12334456888999876     4677666554 445544332     3344577888888888877444

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=94.28  E-value=0.71  Score=34.68  Aligned_cols=31  Identities=26%  Similarity=0.288  Sum_probs=25.6

Q ss_pred             ccceeEEEEeeCC------CeeEeeecCCeEEEEEee
Q psy11524        291 TGSVYDLVWSSDA------TQIAGACANGSLLLGTII  321 (323)
Q Consensus       291 ~~~v~~~~~s~~g------~~l~s~~~dg~i~~~~l~  321 (323)
                      ...+.+++|||-|      -.|++.+.+|.+.+|.-.
T Consensus        85 ~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   85 SSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             cccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            3489999999964      278999999999999743

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG3630|consensus

Probab=94.21  E-value=1  Score=43.10  Aligned_cols=135  Identities=13%  Similarity=0.050  Sum_probs=76.7

Q ss_pred             CCeEEEEECCCCCEEEEEc--CCCceEeeeEEeCCCC------eeeEe------ecCCCceeEEEEecCCCE-EEEEeCC
Q psy11524        123 GLILKVAWCSSTDLILSGG--EDCKYKASFVWDTDGR------QLYSS------LTHDHPISSLAWAPGGDM-FAVGSYN  187 (323)
Q Consensus       123 ~~v~~~~~~~~~~~l~~~~--~d~~i~~i~v~d~~~~------~~~~~------~~~~~~v~~~~~~p~~~~-l~~~~~~  187 (323)
                      -++..+...+|++..++..  .+-.|.   .||++.-      ....+      .....-..++.|+|.-.. .++...|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~---~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~d  177 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVY---SFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSD  177 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEE---EEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccc
Confidence            3455666677766544333  333555   8888311      11111      112234567788886333 3333345


Q ss_pred             -eEEEEeCCCCeee-ecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeec-CC-CCccceEEEEEccCC
Q psy11524        188 -TLRLCDKVGWSHS-LDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTA-PL-SHSHEITQLAVNQTG  261 (323)
Q Consensus       188 -~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~-~~-~~~~~v~~~~~~p~g  261 (323)
                       .|++.-+.-.... .........++++|+|.|+.++.|-..| +.-|... .+....+. .. .....|.++.|-...
T Consensus       178 lsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  178 LSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ  255 (1405)
T ss_pred             cchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence             7777765532211 1123556789999999999999999999 8888643 22222210 11 124688999997654

>PRK13684 Ycf48-like protein; Provisional

Probab=94.14  E-value=3.1  Score=35.11  Aligned_cols=221  Identities=10%  Similarity=0.075  Sum_probs=104.1

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeE----eeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATK----WQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT  154 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~  154 (323)
                      ....++++.|....+-++++ .. +.|..-...+. -..    +......+.++.|.++ ..+++ +..+.|.   . .-
T Consensus        44 ~~~~l~~v~F~d~~~g~avG-~~-G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~---~-S~  115 (334)
T PRK13684         44 TEANLLDIAFTDPNHGWLVG-SN-RTLLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLL---H-TT  115 (334)
T ss_pred             CCCceEEEEEeCCCcEEEEE-CC-CEEEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEE---E-EC
Confidence            46689999998666666655 34 34443322222 111    1112334677888653 33443 4455443   2 22


Q ss_pred             CC-CeeeEee---cCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCeeee-cCCCCccEEEEEEcCCCCEEEEEecCc-
Q psy11524        155 DG-RQLYSSL---THDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSL-DKPDTGSVYDLVWSNDATQIAGACANV-  228 (323)
Q Consensus       155 ~~-~~~~~~~---~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~-  228 (323)
                      ++ +.-..+.   ........+....++..++++..+.|..=+-.++.-.. .......+..+.+.|++.+++++.... 
T Consensus       116 DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~~G~i  195 (334)
T PRK13684        116 DGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSSRGNF  195 (334)
T ss_pred             CCCCCCeEccCCcCCCCCceEEEEECCCcceeeeccceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEEeCCceE
Confidence            22 2111111   11112222222222334444444544332222222221 122355788999999987766655444 


Q ss_pred             EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-cC---CC----CccceeEEEEe
Q psy11524        229 IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-LD---KP----DTGSVYDLVWS  300 (323)
Q Consensus       229 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-~~---~~----~~~~v~~~~~s  300 (323)
                      .+.+|-. ++.-... .......++.+.+.|++    ..+.+ ...|.+.+-....+ ..   ..    ....+.++.+.
T Consensus       196 ~~s~~~g-g~tW~~~-~~~~~~~l~~i~~~~~g----~~~~v-g~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~  268 (334)
T PRK13684        196 YSTWEPG-QTAWTPH-QRNSSRRLQSMGFQPDG----NLWML-ARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYR  268 (334)
T ss_pred             EEEcCCC-CCeEEEe-eCCCcccceeeeEcCCC----CEEEE-ecCCEEEEccCCCCCccccccCCccccccceeeEEEc
Confidence            4444322 2211111 23455688899999987    43333 33343322111111 11   11    12357889999


Q ss_pred             eCCCeeEeeecCCeEE
Q psy11524        301 SDATQIAGACANGSLL  316 (323)
Q Consensus       301 ~~g~~l~s~~~dg~i~  316 (323)
                      |++..++ ++.+|.+.
T Consensus       269 ~~~~~~~-~G~~G~v~  283 (334)
T PRK13684        269 TPGEIWA-GGGNGTLL  283 (334)
T ss_pred             CCCCEEE-EcCCCeEE
Confidence            9876544 55567654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.97  E-value=0.2  Score=27.38  Aligned_cols=31  Identities=10%  Similarity=0.124  Sum_probs=23.4

Q ss_pred             CCEEEEEEcCCCC---eEEEEeeCCeEEEEeCCCC
Q psy11524         82 PPVYSAAWSPDSN---KVLLTQAKSLVIKPLSPNN  113 (323)
Q Consensus        82 ~~v~~~~~sp~~~---~l~~~~~~~~~v~~~~~~~  113 (323)
                      +.|.+|.|||+..   .|+ -+++.+.+.++|...
T Consensus         1 GAvR~~kFsP~~~~~DLL~-~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLA-WAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEE-EEccCCeEEEEEccc
Confidence            4689999998554   555 456778999999874

It contains a characteristic DLL sequence motif.

>KOG2247|consensus

Probab=93.85  E-value=0.018  Score=49.15  Aligned_cols=141  Identities=14%  Similarity=0.139  Sum_probs=95.2

Q ss_pred             eeEeccCCcceeeeeecc---ccccccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeec-cCC
Q psy11524         49 NYPISPYISVLHSYAASH---SWPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQA-HDG  123 (323)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~-~~~  123 (323)
                      ...+.|++..++...+..   -+|+..+..-.+..+.....|+|.-+|..+++.....+.+++|+.+.. ..++.. ...
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~  118 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTS  118 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcc
Confidence            345556554444333332   367777777777778888999999999988888888889999998876 222221 111


Q ss_pred             CeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeec-CCCceeEEEEecCCCEEEEEeCCeEEEE
Q psy11524        124 LILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLT-HDHPISSLAWAPGGDMFAVGSYNTLRLC  192 (323)
Q Consensus       124 ~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~~~i~i~  192 (323)
                      .-.-+.|++.+..++.+...|.+.   +++..........+ |...+.++++.+.+..+..+++..+.+-
T Consensus       119 s~sll~wsKg~~el~ig~~~gn~v---iynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~  185 (615)
T KOG2247|consen  119 SKSLLAWSKGTPELVIGNNAGNIV---IYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVT  185 (615)
T ss_pred             hHHHHhhccCCccccccccccceE---EEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHh
Confidence            112278899888888888889999   99986443333344 8889999999987755544332244333

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.75  E-value=4.1  Score=35.20  Aligned_cols=143  Identities=13%  Similarity=0.075  Sum_probs=80.5

Q ss_pred             ceeEEEEecCCCEEEEEeCC-eEEEEeCCCCe-eeecCCCCccEEEEEEcCCCCEEEEEecCcEEEEEcCCCc-----ee
Q psy11524        168 PISSLAWAPGGDMFAVGSYN-TLRLCDKVGWS-HSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISSSS-----SS  240 (323)
Q Consensus       168 ~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~i~iwd~~~~~-----~~  240 (323)
                      ....+..+++|.+++++..+ -++-||--... ..........+..+.+.+++..++++ .+|-.++....++     ..
T Consensus       240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~d~G~~~~~~~f  318 (398)
T PLN00033        240 TFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVSKGTGLTEEDFDF  318 (398)
T ss_pred             ceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEecCCCCcccccce
Confidence            34556677899888888887 44455543321 22233345678999999999877666 4452233333343     12


Q ss_pred             eeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccccc-------CCCCccceeEEEEeeCCCeeEeeecCC
Q psy11524        241 NVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSL-------DKPDTGSVYDLVWSSDATQIAGACANG  313 (323)
Q Consensus       241 ~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~s~~g~~l~s~~~dg  313 (323)
                      ...........+.++.|.+++     .+.+....|.+....-....       .+. ....+.+.|.++++.++ .+.+|
T Consensus       319 ~~~~~~~~~~~l~~v~~~~d~-----~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~-~~~ly~v~f~~~~~g~~-~G~~G  391 (398)
T PLN00033        319 EEADIKSRGFGILDVGYRSKK-----EAWAAGGSGILLRSTDGGKSWKRDKGADNI-AANLYSVKFFDDKKGFV-LGNDG  391 (398)
T ss_pred             eecccCCCCcceEEEEEcCCC-----cEEEEECCCcEEEeCCCCcceeEccccCCC-CcceeEEEEcCCCceEE-EeCCc
Confidence            221011123458889998875     44555555544433221111       111 45688999987765444 45688


Q ss_pred             eEEEE
Q psy11524        314 SLLLG  318 (323)
Q Consensus       314 ~i~~~  318 (323)
                      .|.-|
T Consensus       392 ~il~~  396 (398)
T PLN00033        392 VLLRY  396 (398)
T ss_pred             EEEEe
Confidence            77654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=93.65  E-value=5.1  Score=35.90  Aligned_cols=99  Identities=11%  Similarity=-0.004  Sum_probs=54.8

Q ss_pred             EEEEEecCc-EEEEEcCCCceeeeecCCCC-----ccceEEEEE-ccCC----------CCccceEEEEeCCCCeEEEec
Q psy11524        220 QIAGACANV-IHIFDISSSSSSNVTAPLSH-----SHEITQLAV-NQTG----------SLQERHVAFIDKNRDLYLSMW  282 (323)
Q Consensus       220 ~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~-~p~g----------~~~d~~l~~~~~~~~~~~~~~  282 (323)
                      .++.++.++ +...|.++|+.+-.......     ...+.-... .+.+          ...++.+...+......+|..
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~  382 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEK  382 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEeeccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEe
Confidence            577788899 99999999998875211100     011111000 0000          012357777888877888887


Q ss_pred             ccccCCCC---ccce--eEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        283 SHSLDKPD---TGSV--YDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       283 ~~~~~~~~---~~~v--~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      ........   ..+.  ..++  -.+..|+.++.||.++.++.
T Consensus       383 ~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~  423 (488)
T cd00216         383 REGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDA  423 (488)
T ss_pred             eCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEEC
Confidence            65210000   0111  1122  25568888889999887764

The alignment model contains an 8-bladed beta-propeller.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.39  E-value=2  Score=30.38  Aligned_cols=111  Identities=18%  Similarity=0.123  Sum_probs=69.1

Q ss_pred             EEECCCCCEEEEEcCCCceEeeeEEeCCCC--------eeeEeecCCCceeEEEEec-----CCCEEEEEeCCeEEEEeC
Q psy11524        128 VAWCSSTDLILSGGEDCKYKASFVWDTDGR--------QLYSSLTHDHPISSLAWAP-----GGDMFAVGSYNTLRLCDK  194 (323)
Q Consensus       128 ~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~--------~~~~~~~~~~~v~~~~~~p-----~~~~l~~~~~~~i~i~d~  194 (323)
                      -.|......|+.++.-|+|.   |++....        ....+......|++++-.|     +...|+.|+...+..||+
T Consensus         4 GkfDG~~pcL~~aT~~gKV~---IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV   80 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVF---IHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDV   80 (136)
T ss_pred             EEeCCCceeEEEEecCCEEE---EECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEc
Confidence            34555555788888888888   9987311        1122333455677775443     355688888889999998


Q ss_pred             CCCeeeecCCCCccEEEEEEcC---CCCEEEEEecCc-EEEEEcCCCceee
Q psy11524        195 VGWSHSLDKPDTGSVYDLVWSN---DATQIAGACANV-IHIFDISSSSSSN  241 (323)
Q Consensus       195 ~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~-i~iwd~~~~~~~~  241 (323)
                      ....-...+...+.+.++.+-.   ...-|+..+.+. |.-||....+...
T Consensus        81 ~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW  131 (136)
T PF14781_consen   81 ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW  131 (136)
T ss_pred             ccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence            8665555555667788877743   122344444455 8888865544443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.20  E-value=0.96  Score=35.47  Aligned_cols=64  Identities=11%  Similarity=-0.021  Sum_probs=45.6

Q ss_pred             ECCCCCEEEEEcCCCceEeeeEEeCCCCeeeE--------ee-------cCCCceeEEEEecCCCEEEEEeCCeEEEEeC
Q psy11524        130 WCSSTDLILSGGEDCKYKASFVWDTDGRQLYS--------SL-------THDHPISSLAWAPGGDMFAVGSYNTLRLCDK  194 (323)
Q Consensus       130 ~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~--------~~-------~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~  194 (323)
                      +..++++|++...+|.++   +||+.......        +.       .....|..+.++.+|.-+++-+.+..+.|+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~---vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLY---VWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEE---EEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence            345688999999999999   99996433211        11       2445678888888888887777777788886


Q ss_pred             CC
Q psy11524        195 VG  196 (323)
Q Consensus       195 ~~  196 (323)
                      .-
T Consensus        95 ~L   96 (219)
T PF07569_consen   95 DL   96 (219)
T ss_pred             cc
Confidence            53

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4441|consensus

Probab=93.14  E-value=6.8  Score=35.83  Aligned_cols=151  Identities=14%  Similarity=0.114  Sum_probs=78.9

Q ss_pred             cCCCCeEEEEeeCC-----eEEEEeCCCCce-eEee--ccCCCeEEEEECCCCCEEEEEcCCC---ceEeeeEEeCCCCe
Q psy11524         90 SPDSNKVLLTQAKS-----LVIKPLSPNNKA-TKWQ--AHDGLILKVAWCSSTDLILSGGEDC---KYKASFVWDTDGRQ  158 (323)
Q Consensus        90 sp~~~~l~~~~~~~-----~~v~~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~i~v~d~~~~~  158 (323)
                      +..+..+++||...     ..+..+|..... ..+.  .....-.+++.. ++...++|+.|.   .+..++.||.....
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence            33455666666553     356777776651 1111  112222344443 457788888882   44456689886444


Q ss_pred             eeEeecCCCceeEEEEe-cCCCEEEEEeCC------eEEEEeCCCCeeeecCCCCccEEEEEE-cCCCCEEEEEecCc--
Q psy11524        159 LYSSLTHDHPISSLAWA-PGGDMFAVGSYN------TLRLCDKVGWSHSLDKPDTGSVYDLVW-SNDATQIAGACANV--  228 (323)
Q Consensus       159 ~~~~~~~~~~v~~~~~~-p~~~~l~~~~~~------~i~i~d~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~--  228 (323)
                      -.....-..+-...... -+|.+.++|+.+      ++-.||..+.+-............... .-+|+..++|+.++  
T Consensus       361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~  440 (571)
T KOG4441|consen  361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS  440 (571)
T ss_pred             eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence            22222211111122222 257777877763      477888776544433323223333222 23677777777443  


Q ss_pred             -----EEEEEcCCCceee
Q psy11524        229 -----IHIFDISSSSSSN  241 (323)
Q Consensus       229 -----i~iwd~~~~~~~~  241 (323)
                           +..||..+++...
T Consensus       441 ~~l~sve~YDP~t~~W~~  458 (571)
T KOG4441|consen  441 NCLNSVECYDPETNTWTL  458 (571)
T ss_pred             cccceEEEEcCCCCceee
Confidence                 6788888776544

>KOG1520|consensus

Probab=92.69  E-value=5.4  Score=33.70  Aligned_cols=108  Identities=12%  Similarity=-0.018  Sum_probs=60.3

Q ss_pred             CCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCC-----ceeEEEEecCCCEEEEEe-----------
Q psy11524        122 DGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDH-----PISSLAWAPGGDMFAVGS-----------  185 (323)
Q Consensus       122 ~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~-----~v~~~~~~p~~~~l~~~~-----------  185 (323)
                      .++...++|...+.-|+.+..---+.   ..+.+++....+.....     -..++..+++|....+-+           
T Consensus       114 CGRPLGl~f~~~ggdL~VaDAYlGL~---~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~  190 (376)
T KOG1520|consen  114 CGRPLGIRFDKKGGDLYVADAYLGLL---KVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVF  190 (376)
T ss_pred             cCCcceEEeccCCCeEEEEecceeeE---EECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEE
Confidence            46778999999885666664332233   44445544333322111     123444455443333221           


Q ss_pred             ------C-CeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc---EEEE
Q psy11524        186 ------Y-NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV---IHIF  232 (323)
Q Consensus       186 ------~-~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---i~iw  232 (323)
                            . |.+.-||..++...++...-.-...++.|||+.+++.+-...   .+.|
T Consensus       191 a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ryw  247 (376)
T KOG1520|consen  191 AALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYW  247 (376)
T ss_pred             eeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeE
Confidence                  1 256666766665555544445678899999999888775443   4555

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=92.61  E-value=1.1  Score=38.60  Aligned_cols=156  Identities=13%  Similarity=0.052  Sum_probs=85.9

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc---eeEe-eccCC----CeE-EEEECCCCCEEEEEcCCCceEeee
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK---ATKW-QAHDG----LIL-KVAWCSSTDLILSGGEDCKYKASF  150 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~---~~~~-~~~~~----~v~-~~~~~~~~~~l~~~~~d~~i~~i~  150 (323)
                      ..+.|..+-..|||+.+.+-+..  .+.++++.+.   .+++ ....+    .|+ .+.....|..+++++.||-|.   
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g~--~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vs---  293 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTGS--ELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVS---  293 (733)
T ss_pred             CccchHhhEECCCCCEEEEecCC--eEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCcee---
Confidence            35678888899999999876654  4555555443   1121 11111    111 122223466788889999988   


Q ss_pred             EE-eCC--CCe-eeEe---ecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEE
Q psy11524        151 VW-DTD--GRQ-LYSS---LTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIA  222 (323)
Q Consensus       151 v~-d~~--~~~-~~~~---~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  222 (323)
                      -| |+.  +++ +..+   .-...++.-+.-..+-+-+++-.. +++.++.....+.......-..+.-+++||++.+|+
T Consensus       294 QWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll  373 (733)
T COG4590         294 QWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLL  373 (733)
T ss_pred             eeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchhe
Confidence            66 332  221 1111   111222322221112233555555 477776654433333333334677889999999988


Q ss_pred             EEecCcEEEEEcCCCcee
Q psy11524        223 GACANVIHIFDISSSSSS  240 (323)
Q Consensus       223 ~~~~d~i~iwd~~~~~~~  240 (323)
                      +-...+|+++.+++..+.
T Consensus       374 ~e~~gki~~~~l~Nr~Pe  391 (733)
T COG4590         374 SEDQGKIRLAQLENRNPE  391 (733)
T ss_pred             eecCCceEEEEecCCCCC
Confidence            765555999987765543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.51  E-value=6.5  Score=34.03  Aligned_cols=187  Identities=12%  Similarity=0.058  Sum_probs=83.4

Q ss_pred             CCCeEEEEeeCCeEEEEeCCCCc------eeEeec---cC----CCeEEEEECCCCCEEEEEcC--C----CceEeeeEE
Q psy11524         92 DSNKVLLTQAKSLVIKPLSPNNK------ATKWQA---HD----GLILKVAWCSSTDLILSGGE--D----CKYKASFVW  152 (323)
Q Consensus        92 ~~~~l~~~~~~~~~v~~~~~~~~------~~~~~~---~~----~~v~~~~~~~~~~~l~~~~~--d----~~i~~i~v~  152 (323)
                      +.++|+..+-....|++.|....      .+.+..   +.    .....+...|+|+.++++-.  +    |.+.   ++
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~---ll  162 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFV---LL  162 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEE---EE
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEE---EE
Confidence            56788888877789999998743      222221   11    22334455678888877532  2    3344   77


Q ss_pred             eCC-CCeeeEeecC---CCceeEEEEecCCCEEEEEe--------------------CC-eEEEEeCCCCeeee-c-CCC
Q psy11524        153 DTD-GRQLYSSLTH---DHPISSLAWAPGGDMFAVGS--------------------YN-TLRLCDKVGWSHSL-D-KPD  205 (323)
Q Consensus       153 d~~-~~~~~~~~~~---~~~v~~~~~~p~~~~l~~~~--------------------~~-~i~i~d~~~~~~~~-~-~~~  205 (323)
                      |-+ .+........   ...-..+.|.|..+.+++..                    .+ ++.+||+...+..+ + .+.
T Consensus       163 D~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~  242 (461)
T PF05694_consen  163 DGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE  242 (461)
T ss_dssp             -TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred             cCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence            765 3333333322   22345778888888887763                    35 89999998764442 2 222


Q ss_pred             C-ccEEEEEEc--CCCCEEEEEec-Cc-EEEE-EcCCCceee--eecCCC----------C-------ccceEEEEEccC
Q psy11524        206 T-GSVYDLVWS--NDATQIAGACA-NV-IHIF-DISSSSSSN--VTAPLS----------H-------SHEITQLAVNQT  260 (323)
Q Consensus       206 ~-~~v~~~~~~--~~~~~l~~~~~-d~-i~iw-d~~~~~~~~--~~~~~~----------~-------~~~v~~~~~~p~  260 (323)
                      . ..+..+.|.  |+..+=++++. .. |..| .-+.++...  .+.+..          .       ..-++.+..|.|
T Consensus       243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD  322 (461)
T PF05694_consen  243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD  322 (461)
T ss_dssp             TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred             CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence            2 235566665  44444444443 33 5444 323333111  100111          0       245788999998


Q ss_pred             CCCccceEEEEe-CCCCeEEEecccc
Q psy11524        261 GSLQERHVAFID-KNRDLYLSMWSHS  285 (323)
Q Consensus       261 g~~~d~~l~~~~-~~~~~~~~~~~~~  285 (323)
                      .    ++|.+.+ ..|.++.|++...
T Consensus       323 D----rfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  323 D----RFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             S-----EEEEEETTTTEEEEEE-SST
T ss_pred             C----CEEEEEcccCCcEEEEecCCC
Confidence            6    7887766 4577888887663

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1916|consensus

Probab=92.36  E-value=0.32  Score=45.13  Aligned_cols=155  Identities=11%  Similarity=0.053  Sum_probs=84.4

Q ss_pred             CCCCEEEEEEcCC-CCeEEEEeeCCeEEEEeCCCC---c------eeEeeccCCCeEEEEECC---CCCEEEEEcCCCce
Q psy11524         80 VSPPVYSAAWSPD-SNKVLLTQAKSLVIKPLSPNN---K------ATKWQAHDGLILKVAWCS---STDLILSGGEDCKY  146 (323)
Q Consensus        80 ~~~~v~~~~~sp~-~~~l~~~~~~~~~v~~~~~~~---~------~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i  146 (323)
                      ..+.|..+.|... -..++   .+-|.+.+|+...   +      +.........+.-+.|.|   +..++..+-.++++
T Consensus       131 f~G~v~dl~fah~~~pk~~---~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i  207 (1283)
T KOG1916|consen  131 FPGGVGDLQFAHTKCPKGR---RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI  207 (1283)
T ss_pred             CCCCcccccccccCChHHH---HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence            3566777777431 11111   2225677777542   2      112223334455666665   55677777788888


Q ss_pred             EeeeEEeCCCCeeeEeecCCCceeEEE-----------EecCCCEEEEEeCC-eEEEEeCC--CC----eeeecCCCCc-
Q psy11524        147 KASFVWDTDGRQLYSSLTHDHPISSLA-----------WAPGGDMFAVGSYN-TLRLCDKV--GW----SHSLDKPDTG-  207 (323)
Q Consensus       147 ~~i~v~d~~~~~~~~~~~~~~~v~~~~-----------~~p~~~~l~~~~~~-~i~i~d~~--~~----~~~~~~~~~~-  207 (323)
                      +   +.+.+......+..|...+..++           .||||+.|+.++.| .++.|.+.  +.    ++...++|.+ 
T Consensus       208 ~---lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~  284 (1283)
T KOG1916|consen  208 R---LLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKH  284 (1283)
T ss_pred             e---EeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCC
Confidence            8   66654333333333444333332           68999999998874 77777642  32    3334555653 


Q ss_pred             cEEEEEEcCCC---------CEEEEEecCc--EEEEEcCCCcee
Q psy11524        208 SVYDLVWSNDA---------TQIAGACANV--IHIFDISSSSSS  240 (323)
Q Consensus       208 ~v~~~~~~~~~---------~~l~~~~~d~--i~iwd~~~~~~~  240 (323)
                      +-.|.-++.+.         .+++++++-+  +++|.....+++
T Consensus       285 p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  285 PRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             CceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            32232243221         1345555544  999987776665

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=92.24  E-value=8.2  Score=34.58  Aligned_cols=101  Identities=13%  Similarity=0.116  Sum_probs=57.6

Q ss_pred             EEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEE-----------------eC-CeEEEEeCCC
Q psy11524        136 LILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVG-----------------SY-NTLRLCDKVG  196 (323)
Q Consensus       136 ~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-----------------~~-~~i~i~d~~~  196 (323)
                      .++.++.+|.+.   ..|.+ ++.+......   ...++.+| +..++..                 .. +.+.-.|+.+
T Consensus       303 ~V~~g~~~G~l~---ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t  375 (488)
T cd00216         303 AIVHAPKNGFFY---VLDRTTGKLISARPEV---EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT  375 (488)
T ss_pred             EEEEECCCceEE---EEECCCCcEeeEeEee---ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence            577888899998   99984 6666654321   11233343 2222211                 11 3677777664


Q ss_pred             CeeeecCCCC---------ccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeee
Q psy11524        197 WSHSLDKPDT---------GSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVT  243 (323)
Q Consensus       197 ~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~  243 (323)
                      .+........         .+...-.....+..|++++.|+ ++.+|.++|+.+.+.
T Consensus       376 G~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~  432 (488)
T cd00216         376 GKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKF  432 (488)
T ss_pred             CcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEE
Confidence            4333222111         1111101112456888889999 999999999998874

The alignment model contains an 8-bladed beta-propeller.

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=92.06  E-value=5.9  Score=36.70  Aligned_cols=147  Identities=18%  Similarity=0.157  Sum_probs=85.7

Q ss_pred             eecCCCCCEEEEEEcCCCCeEEEEeeCC---eEEEEeCCCCceeEeeccCCCeEEEEECCCCCEEEEEcC------CCc-
Q psy11524         76 RTLNVSPPVYSAAWSPDSNKVLLTQAKS---LVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGE------DCK-  145 (323)
Q Consensus        76 ~~~~~~~~v~~~~~sp~~~~l~~~~~~~---~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~-  145 (323)
                      ....+...+..+.|+|+|+.++....+.   ..+++.+.. .  .+..+...+....|+|++..++....      ++. 
T Consensus        54 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g--~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~  130 (620)
T COG1506          54 RLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G--LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGD  130 (620)
T ss_pred             cccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C--ceeeeecccccceeCCCCCeEEEEecccccccCCce
Confidence            3445788899999999999999887332   234555444 2  34456667788899999887776211      222 


Q ss_pred             ---eEeeeEEeC-CC-C-----------eeeEeecCCCceeEEEEecCCCEEEEEeCC--------eEEEEeCCCCeeee
Q psy11524        146 ---YKASFVWDT-DG-R-----------QLYSSLTHDHPISSLAWAPGGDMFAVGSYN--------TLRLCDKVGWSHSL  201 (323)
Q Consensus       146 ---i~~i~v~d~-~~-~-----------~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~--------~i~i~d~~~~~~~~  201 (323)
                         +.++.+|.. .+ .           ...........+....+++++..++.....        ...++...+..+..
T Consensus       131 ~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (620)
T COG1506         131 HLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELES  210 (620)
T ss_pred             eeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceEE
Confidence               001113322 22 1           122222334556677777767766655431        23333333445555


Q ss_pred             cCCCCccEEEEEEcCCCCEEEEEe
Q psy11524        202 DKPDTGSVYDLVWSNDATQIAGAC  225 (323)
Q Consensus       202 ~~~~~~~v~~~~~~~~~~~l~~~~  225 (323)
                      .......+..+.+.++|+.++..+
T Consensus       211 ~~~~~~~~~~~~~~~~gk~~~~~~  234 (620)
T COG1506         211 LTPGEGSISKLAFDADGKSIALLG  234 (620)
T ss_pred             EcCCCceeeeeeeCCCCCeeEEec
Confidence            555666789999999998665543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.05  E-value=5.6  Score=33.54  Aligned_cols=98  Identities=11%  Similarity=0.087  Sum_probs=53.3

Q ss_pred             CeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCe---eeEe----ecCCCceeEEEEecC----CCEEEEEeC------
Q psy11524        124 LILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQ---LYSS----LTHDHPISSLAWAPG----GDMFAVGSY------  186 (323)
Q Consensus       124 ~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~---~~~~----~~~~~~v~~~~~~p~----~~~l~~~~~------  186 (323)
                      ..++|+|.|||+++++ ...|.|.   +++.++..   +..+    .........++++|+    +.+.++.+.      
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~---~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~   78 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIW---VVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG   78 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEE---EEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred             CceEEEEeCCCcEEEE-eCCceEE---EEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence            4578999999887665 5599999   99854443   2222    223456899999994    443333331      


Q ss_pred             C---eEEEEeCCCC--e----ee---ecC---CCCccEEEEEEcCCCCEEEEEe
Q psy11524        187 N---TLRLCDKVGW--S----HS---LDK---PDTGSVYDLVWSNDATQIAGAC  225 (323)
Q Consensus       187 ~---~i~i~d~~~~--~----~~---~~~---~~~~~v~~~~~~~~~~~l~~~~  225 (323)
                      .   .|.-|.....  .    ..   ...   .....-..++|.|||.+.++.+
T Consensus        79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G  132 (331)
T PF07995_consen   79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG  132 (331)
T ss_dssp             SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred             CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence            1   3333333211  1    11   111   1223456799999997655544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.92  E-value=0.76  Score=24.76  Aligned_cols=28  Identities=11%  Similarity=0.183  Sum_probs=21.6

Q ss_pred             CCCCEEEEEec-Cc-EEEEEcCCCceeeee
Q psy11524        216 NDATQIAGACA-NV-IHIFDISSSSSSNVT  243 (323)
Q Consensus       216 ~~~~~l~~~~~-d~-i~iwd~~~~~~~~~~  243 (323)
                      |++++|+++.. ++ |.++|..+++.+..+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i   30 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATI   30 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            67887777765 44 999999888887763

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=91.92  E-value=9.1  Score=35.72  Aligned_cols=92  Identities=14%  Similarity=0.159  Sum_probs=54.5

Q ss_pred             ceeEEEEecCCCEEEEEeC----C--eEEEEeCCCCe---eeecCCCCccEEEEEEcCCCCEEEEEecCcEEEEEcCCCc
Q psy11524        168 PISSLAWAPGGDMFAVGSY----N--TLRLCDKVGWS---HSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISSSS  238 (323)
Q Consensus       168 ~v~~~~~~p~~~~l~~~~~----~--~i~i~d~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~i~iwd~~~~~  238 (323)
                      .-..++|-|+|..+++-..    +  .+.++..++..   .....+....+...+|+-....++.+..+.+++|-..+-.
T Consensus       248 ~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyh  327 (1243)
T COG5290         248 MEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYH  327 (1243)
T ss_pred             chhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceE
Confidence            3345889999999887652    2  56677655432   2122333445677788776655555443339999876654


Q ss_pred             eeeeecCCCCccceEEEEEccCC
Q psy11524        239 SSNVTAPLSHSHEITQLAVNQTG  261 (323)
Q Consensus       239 ~~~~~~~~~~~~~v~~~~~~p~g  261 (323)
                      ..-.  ..-.-..+.-+.|+|..
T Consensus       328 WYLK--~e~~ip~~s~vkwhpe~  348 (1243)
T COG5290         328 WYLK--VERQIPGISYVKWHPEE  348 (1243)
T ss_pred             EEEE--EeecCCCcceeeecccc
Confidence            3322  12222345667888876

>PHA03098 kelch-like protein; Provisional

Probab=91.73  E-value=10  Score=34.47  Aligned_cols=106  Identities=10%  Similarity=0.082  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCCC---ceEeeeEEeCCCCeeeEeecCCCc--eeEEEEecCCCEEEEEeCC------eEEEEeCCCCeeee
Q psy11524        133 STDLILSGGEDC---KYKASFVWDTDGRQLYSSLTHDHP--ISSLAWAPGGDMFAVGSYN------TLRLCDKVGWSHSL  201 (323)
Q Consensus       133 ~~~~l~~~~~d~---~i~~i~v~d~~~~~~~~~~~~~~~--v~~~~~~p~~~~l~~~~~~------~i~i~d~~~~~~~~  201 (323)
                      ++..++.|+.++   ....++.||.....-..+.....+  -.+++ .-+++.++.|+.+      .+..||..+..-..
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~  372 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWRE  372 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE-EECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence            456667776543   222445888865544443322111  11222 2257777777742      47788876543332


Q ss_pred             cCCC--CccEEEEEEcCCCCEEEEEecC------c-EEEEEcCCCcee
Q psy11524        202 DKPD--TGSVYDLVWSNDATQIAGACAN------V-IHIFDISSSSSS  240 (323)
Q Consensus       202 ~~~~--~~~v~~~~~~~~~~~l~~~~~d------~-i~iwd~~~~~~~  240 (323)
                      ....  ...-.+++ .-+++..+.|+.+      . +..||..+++..
T Consensus       373 ~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        373 EPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            2211  11111222 2356666666631      4 788998876543

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=91.66  E-value=0.92  Score=24.09  Aligned_cols=27  Identities=15%  Similarity=0.131  Sum_probs=18.3

Q ss_pred             EeeccCCCeEEEEECCCCCEEEEEcCC
Q psy11524        117 KWQAHDGLILKVAWCSSTDLILSGGED  143 (323)
Q Consensus       117 ~~~~~~~~v~~~~~~~~~~~l~~~~~d  143 (323)
                      .+....+.-....|+|||+.|+.++..
T Consensus         3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~   29 (39)
T PF07676_consen    3 QLTNSPGDDGSPAWSPDGKYIYFTSNR   29 (39)
T ss_dssp             EES-SSSSEEEEEE-TTSSEEEEEEEC
T ss_pred             CcccCCccccCEEEecCCCEEEEEecC
Confidence            344556677889999999988766643

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=91.62  E-value=11  Score=34.90  Aligned_cols=139  Identities=14%  Similarity=0.165  Sum_probs=79.3

Q ss_pred             EeeccCCCeEEEEECCCCCEEEEEcCCCc-eEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC------C-e
Q psy11524        117 KWQAHDGLILKVAWCSSTDLILSGGEDCK-YKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY------N-T  188 (323)
Q Consensus       117 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~------~-~  188 (323)
                      ....+...+..+.|+|+|..++..+.++. ..++++.+..+    .+..+...+....|+|+++.++....      + .
T Consensus        54 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~  129 (620)
T COG1506          54 RLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGG  129 (620)
T ss_pred             cccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEEEecccccccCCc
Confidence            34456777888999999999988884433 33444555553    34445566778889998888776210      1 1


Q ss_pred             -------EEEEe-CCC-C-----------eeeecCCCCccEEEEEEcCCCCEEEEEec----Cc-E---EEEEcCCCcee
Q psy11524        189 -------LRLCD-KVG-W-----------SHSLDKPDTGSVYDLVWSNDATQIAGACA----NV-I---HIFDISSSSSS  240 (323)
Q Consensus       189 -------i~i~d-~~~-~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~-i---~iwd~~~~~~~  240 (323)
                             +.+|. .++ .           ...........+....++++++.++....    +. +   .++...++...
T Consensus       130 ~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (620)
T COG1506         130 DHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELE  209 (620)
T ss_pred             eeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceE
Confidence                   22332 223 1           11112223445666777776776655432    22 2   33333344444


Q ss_pred             eeecCCCCccceEEEEEccCCC
Q psy11524        241 NVTAPLSHSHEITQLAVNQTGS  262 (323)
Q Consensus       241 ~~~~~~~~~~~v~~~~~~p~g~  262 (323)
                      .   .......+..+.|.++|+
T Consensus       210 ~---~~~~~~~~~~~~~~~~gk  228 (620)
T COG1506         210 S---LTPGEGSISKLAFDADGK  228 (620)
T ss_pred             E---EcCCCceeeeeeeCCCCC
Confidence            4   355556688889999883

>PRK10115 protease 2; Provisional

Probab=91.42  E-value=13  Score=35.05  Aligned_cols=191  Identities=9%  Similarity=0.017  Sum_probs=91.8

Q ss_pred             ceeEeeEeccCCcceeeeeeccc-cccccceeeecC-------CCCCEEEEEEcCCCCeEEEEeeCC-----eEEEEeCC
Q psy11524         45 GTVINYPISPYISVLHSYAASHS-WPQALSLCRTLN-------VSPPVYSAAWSPDSNKVLLTQAKS-----LVIKPLSP  111 (323)
Q Consensus        45 ~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~v~~~~~sp~~~~l~~~~~~~-----~~v~~~~~  111 (323)
                      ..+..+.++||++.++.....+. ...++.+...-.       ....-..++|++|++.|+++..+.     ..++.+++
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l  206 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI  206 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence            44666889999987764443332 111121111111       111115699999999888876532     35777777


Q ss_pred             CCc----eeEeeccCCCeE-EEEECCCCCEEEEEcCCCceEeeeEEeC---CCCeeeEeecCCCceeEEEEecCCCEEEE
Q psy11524        112 NNK----ATKWQAHDGLIL-KVAWCSSTDLILSGGEDCKYKASFVWDT---DGRQLYSSLTHDHPISSLAWAPGGDMFAV  183 (323)
Q Consensus       112 ~~~----~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~~i~v~d~---~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  183 (323)
                      .+.    ...+........ .+..+.++++++..+..+.-..+++++.   .+.....+.........+. +..+.+++.
T Consensus       207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~  285 (686)
T PRK10115        207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLR  285 (686)
T ss_pred             CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEE
Confidence            655    223333333333 3333447877665544332222338885   2332222222222223332 333333333


Q ss_pred             EeCC--eEEEE--eCCC-CeeeecCCC-C-ccEEEEEEcCCCCEEEEEecCc---EEEEEcCCC
Q psy11524        184 GSYN--TLRLC--DKVG-WSHSLDKPD-T-GSVYDLVWSNDATQIAGACANV---IHIFDISSS  237 (323)
Q Consensus       184 ~~~~--~i~i~--d~~~-~~~~~~~~~-~-~~v~~~~~~~~~~~l~~~~~d~---i~iwd~~~~  237 (323)
                      ...+  ..+|.  ++.+ .....+..+ . ..+..+.++.+ ..+++...++   +.++|...+
T Consensus       286 tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~~  348 (686)
T PRK10115        286 SNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKTR  348 (686)
T ss_pred             EcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCCC
Confidence            3322  44444  4442 222222233 3 36788888733 3455555566   566665443

>KOG4460|consensus

Probab=91.14  E-value=7.2  Score=34.47  Aligned_cols=24  Identities=8%  Similarity=-0.046  Sum_probs=19.8

Q ss_pred             CeEEEEECCCCCEEEEEcCCCceE
Q psy11524        124 LILKVAWCSSTDLILSGGEDCKYK  147 (323)
Q Consensus       124 ~v~~~~~~~~~~~l~~~~~d~~i~  147 (323)
                      .|..+..++.|..++..+.+|.+.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~v  128 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMV  128 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEE
Confidence            567788899999999888888665

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=90.98  E-value=2.8  Score=27.41  Aligned_cols=42  Identities=12%  Similarity=-0.106  Sum_probs=30.6

Q ss_pred             CeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc
Q psy11524        187 NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV  228 (323)
Q Consensus       187 ~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  228 (323)
                      |.+.-||..+++..++...-...+.+++++|+.+++.+-...
T Consensus        37 GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~   78 (89)
T PF03088_consen   37 GRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGR   78 (89)
T ss_dssp             EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGG
T ss_pred             cCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccC
Confidence            478889988877665554455789999999999887765443

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.96  E-value=4.6  Score=31.71  Aligned_cols=67  Identities=7%  Similarity=-0.033  Sum_probs=44.9

Q ss_pred             EecCCCEEEEEeC-CeEEEEeCCCCeeee--------cC-------CCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCC
Q psy11524        174 WAPGGDMFAVGSY-NTLRLCDKVGWSHSL--------DK-------PDTGSVYDLVWSNDATQIAGACANV-IHIFDISS  236 (323)
Q Consensus       174 ~~p~~~~l~~~~~-~~i~i~d~~~~~~~~--------~~-------~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~  236 (323)
                      +..+++++++.+. |.+++||+...+...        +.       .....|..+.++.+|.-+++-+ ++ .+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            3345777777777 699999988654321        11       2445688889998887776665 46 88888665


Q ss_pred             Cceee
Q psy11524        237 SSSSN  241 (323)
Q Consensus       237 ~~~~~  241 (323)
                      +.-+.
T Consensus        97 ~~W~~  101 (219)
T PF07569_consen   97 GCWIR  101 (219)
T ss_pred             ceeEE
Confidence            54443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=90.94  E-value=2.1  Score=40.34  Aligned_cols=86  Identities=9%  Similarity=0.050  Sum_probs=56.5

Q ss_pred             eEEEEeeCCeEEEEeCCCCc-eeEe-eccCCCeEEEEECCCCCEEEE-EcCCC--ceEeeeEEeCC--CCeeeEeecCCC
Q psy11524         95 KVLLTQAKSLVIKPLSPNNK-ATKW-QAHDGLILKVAWCSSTDLILS-GGEDC--KYKASFVWDTD--GRQLYSSLTHDH  167 (323)
Q Consensus        95 ~l~~~~~~~~~v~~~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~l~~-~~~d~--~i~~i~v~d~~--~~~~~~~~~~~~  167 (323)
                      .||+.....+.|.+-|..+. .+.+ ..+..+|.+.+|||||+.|+. .+.++  .=..|++-++.  +..+.++.-...
T Consensus       320 kiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~a  399 (912)
T TIGR02171       320 KLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENA  399 (912)
T ss_pred             eEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccc
Confidence            45555544346777776664 4445 567889999999999999988 44444  11123488884  455566665666


Q ss_pred             ceeEEEEecCCCE
Q psy11524        168 PISSLAWAPGGDM  180 (323)
Q Consensus       168 ~v~~~~~~p~~~~  180 (323)
                      .|..-...++|..
T Consensus       400 aiprwrv~e~gdt  412 (912)
T TIGR02171       400 AIPRWRVLENGDT  412 (912)
T ss_pred             cccceEecCCCCe
Confidence            6766667777765

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PHA02713 hypothetical protein; Provisional

Probab=90.94  E-value=12  Score=34.10  Aligned_cols=147  Identities=10%  Similarity=0.047  Sum_probs=68.5

Q ss_pred             CCCeEEEEeeC-C----eEEEEeCCCCcee-Eeec---cCCCeEEEEECCCCCEEEEEcCCCc--eEeeeEEeCCCCeee
Q psy11524         92 DSNKVLLTQAK-S----LVIKPLSPNNKAT-KWQA---HDGLILKVAWCSSTDLILSGGEDCK--YKASFVWDTDGRQLY  160 (323)
Q Consensus        92 ~~~~l~~~~~~-~----~~v~~~~~~~~~~-~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~--i~~i~v~d~~~~~~~  160 (323)
                      ++...++||.+ +    ..+..||.....- .+..   .......+.  -+|+..+.|+.++.  ...+..||.....-.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            56666666532 1    2466777655421 1111   111112222  25777788877543  122338998654333


Q ss_pred             EeecCCCceeEE-EEecCCCEEEEEeCC------------------------eEEEEeCCCCeeeecCCC-CccEEEEEE
Q psy11524        161 SSLTHDHPISSL-AWAPGGDMFAVGSYN------------------------TLRLCDKVGWSHSLDKPD-TGSVYDLVW  214 (323)
Q Consensus       161 ~~~~~~~~v~~~-~~~p~~~~l~~~~~~------------------------~i~i~d~~~~~~~~~~~~-~~~v~~~~~  214 (323)
                      .+.....+.... +..-+|++.+.|+.+                        .+..||.....-...... .........
T Consensus       381 ~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~  460 (557)
T PHA02713        381 MLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV  460 (557)
T ss_pred             ECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE
Confidence            332222111111 112257777776642                        467788765433322211 111111122


Q ss_pred             cCCCCEEEEEecC------c-EEEEEcCC-Ccee
Q psy11524        215 SNDATQIAGACAN------V-IHIFDISS-SSSS  240 (323)
Q Consensus       215 ~~~~~~l~~~~~d------~-i~iwd~~~-~~~~  240 (323)
                      .-+++..+.|+.+      . +..||.++ .+..
T Consensus       461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~  494 (557)
T PHA02713        461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE  494 (557)
T ss_pred             EECCEEEEEeCCCCCCccceeEEEecCCCCCCee
Confidence            2356666666643      3 57888887 4443

>KOG1520|consensus

Probab=90.91  E-value=8.9  Score=32.45  Aligned_cols=140  Identities=9%  Similarity=0.053  Sum_probs=81.5

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCce-eEeeccCC-----CeEEEEECCCCCEEE----------------
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKA-TKWQAHDG-----LILKVAWCSSTDLIL----------------  138 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~-~~~~~~~~-----~v~~~~~~~~~~~l~----------------  138 (323)
                      -+....++|...|.-|+++...-|... .+..++. ..+..+..     -..++...++|....                
T Consensus       114 CGRPLGl~f~~~ggdL~VaDAYlGL~~-V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~  192 (376)
T KOG1520|consen  114 CGRPLGIRFDKKGGDLYVADAYLGLLK-VGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAA  192 (376)
T ss_pred             cCCcceEEeccCCCeEEEEecceeeEE-ECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEee
Confidence            477889999999977777766654443 3444332 22211111     112344444332222                


Q ss_pred             -EEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeCC--eEEEEeCCCCee---e-ecCCCCccEEE
Q psy11524        139 -SGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN--TLRLCDKVGWSH---S-LDKPDTGSVYD  211 (323)
Q Consensus       139 -~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~--~i~i~d~~~~~~---~-~~~~~~~~v~~  211 (323)
                       .+..+|++.   -||...+....+...-.-.+.++.|||+.+++++-..  .|+=|=+.+...   . ...+..+..-.
T Consensus       193 l~g~~~GRl~---~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDN  269 (376)
T KOG1520|consen  193 LEGDPTGRLF---RYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDN  269 (376)
T ss_pred             ecCCCccceE---EecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcc
Confidence             233456666   8888777776766666667889999999998888763  444343443322   2 22335555666


Q ss_pred             EEEcCCCCEEEEE
Q psy11524        212 LVWSNDATQIAGA  224 (323)
Q Consensus       212 ~~~~~~~~~l~~~  224 (323)
                      +..+++|.+-+.-
T Consensus       270 IR~~~~G~fWVal  282 (376)
T KOG1520|consen  270 IRRDSTGHFWVAL  282 (376)
T ss_pred             eeECCCCCEEEEE
Confidence            7777888755443

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=90.58  E-value=8.7  Score=31.72  Aligned_cols=88  Identities=16%  Similarity=0.096  Sum_probs=58.6

Q ss_pred             EEEEecCCCEEEEEeC-CeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEec--------------------Cc-
Q psy11524        171 SLAWAPGGDMFAVGSY-NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACA--------------------NV-  228 (323)
Q Consensus       171 ~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------------------d~-  228 (323)
                      +..|. +|++.+.-+. +.+.-+|.++........-.+..+.++|.  |.+++++-.                    .. 
T Consensus       207 SPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CG  283 (335)
T TIGR03032       207 SPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCG  283 (335)
T ss_pred             CCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhccc
Confidence            34454 5666665555 58999998733333223345677888887  777765532                    13 


Q ss_pred             EEEEEcCCCceeeeecCCCCccceEEEEEccCC
Q psy11524        229 IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTG  261 (323)
Q Consensus       229 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g  261 (323)
                      |.+.|+++|..+..+++.+.-..+.+++.-|.-
T Consensus       284 v~vidl~tG~vv~~l~feg~v~EifdV~vLPg~  316 (335)
T TIGR03032       284 VAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPGV  316 (335)
T ss_pred             EEEEECCCCCEEEEEEeCCceeEEEEEEEecCC
Confidence            778888888888876677777788888888764

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=90.50  E-value=4.6  Score=30.33  Aligned_cols=34  Identities=18%  Similarity=0.083  Sum_probs=25.3

Q ss_pred             cceEEEEEccCCC--CccceEEEEeCCCCeEEEecc
Q psy11524        250 HEITQLAVNQTGS--LQERHVAFIDKNRDLYLSMWS  283 (323)
Q Consensus       250 ~~v~~~~~~p~g~--~~d~~l~~~~~~~~~~~~~~~  283 (323)
                      ..+..++|||.|-  .....|++...++.+.+|...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            3789999999775  344677777778888777654

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=90.23  E-value=12  Score=32.91  Aligned_cols=57  Identities=14%  Similarity=0.125  Sum_probs=36.3

Q ss_pred             CCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCC-----CCccceEEEEEccCC
Q psy11524        205 DTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPL-----SHSHEITQLAVNQTG  261 (323)
Q Consensus       205 ~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~p~g  261 (323)
                      .-.....++|.|||++|++--..| |++++..++.......+.     ........++++|+-
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            344678899999997766655457 888876554321110011     134667899999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=89.82  E-value=4  Score=26.68  Aligned_cols=43  Identities=12%  Similarity=0.071  Sum_probs=32.3

Q ss_pred             CCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeCC
Q psy11524        142 EDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN  187 (323)
Q Consensus       142 ~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~  187 (323)
                      .+|.+.   .||+.+++...+...-.-.+.++++||+..++++-..
T Consensus        35 ~~GRll---~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~   77 (89)
T PF03088_consen   35 PTGRLL---RYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETG   77 (89)
T ss_dssp             --EEEE---EEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG
T ss_pred             CCcCEE---EEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEecc
Confidence            356666   9999888887776666678999999999988887763

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=89.38  E-value=8.2  Score=33.54  Aligned_cols=78  Identities=13%  Similarity=0.049  Sum_probs=46.0

Q ss_pred             CCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCC-eeeecCCCCcc-EEEEEEc-CC----------------CCEEE-E
Q psy11524        165 HDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGW-SHSLDKPDTGS-VYDLVWS-ND----------------ATQIA-G  223 (323)
Q Consensus       165 ~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~-~~~~~~~~~~~-v~~~~~~-~~----------------~~~l~-~  223 (323)
                      ....+.+++.+|++++.|+... |.|.++|+... .+...++..+. +.=+... +.                ..+|+ -
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            3445788999999887777655 69999998754 33344443321 1100000 00                11233 3


Q ss_pred             EecCc-EEEEEcCCCceeee
Q psy11524        224 ACANV-IHIFDISSSSSSNV  242 (323)
Q Consensus       224 ~~~d~-i~iwd~~~~~~~~~  242 (323)
                      +-..| |.||.+++|..+..
T Consensus       386 aprRg~lEvW~~~~g~Rv~a  405 (415)
T PF14655_consen  386 APRRGILEVWSMRQGPRVAA  405 (415)
T ss_pred             eccCCeEEEEecCCCCEEEE
Confidence            44466 88999888877665

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=89.33  E-value=8.6  Score=29.80  Aligned_cols=49  Identities=16%  Similarity=0.141  Sum_probs=33.0

Q ss_pred             CEEEEEeCC-eEEEEeCCCC--eeeecCCCCccEEEEEEcCCCCEEEEEecC
Q psy11524        179 DMFAVGSYN-TLRLCDKVGW--SHSLDKPDTGSVYDLVWSNDATQIAGACAN  227 (323)
Q Consensus       179 ~~l~~~~~~-~i~i~d~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  227 (323)
                      ..|+.+..+ .|.+|++.+.  ........-+.|..+.++..|+||++--.+
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k   80 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEK   80 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEee
Confidence            344443444 9999998733  222222244789999999999999997553

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.57  E-value=21  Score=33.33  Aligned_cols=138  Identities=9%  Similarity=0.146  Sum_probs=84.6

Q ss_pred             CCEEEEEeCCeEEEEeCCCCee--------eec-C--------------CCCccEEEEEEcC--CCCEEEEEecCc-EEE
Q psy11524        178 GDMFAVGSYNTLRLCDKVGWSH--------SLD-K--------------PDTGSVYDLVWSN--DATQIAGACANV-IHI  231 (323)
Q Consensus       178 ~~~l~~~~~~~i~i~d~~~~~~--------~~~-~--------------~~~~~v~~~~~~~--~~~~l~~~~~d~-i~i  231 (323)
                      ..+++++..+.|.||+++....        ... .              +....|..+....  +...|+.+.+|| |.+
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~  128 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA  128 (717)
T ss_pred             CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence            5667777767888888653211        000 0              0111244444433  456788999999 999


Q ss_pred             EEcCC-------C----ce---e----eeecCCCCccceEEEEEc--cCCCCccceEEEEeCCCCeEEEecccc-----c
Q psy11524        232 FDISS-------S----SS---S----NVTAPLSHSHEITQLAVN--QTGSLQERHVAFIDKNRDLYLSMWSHS-----L  286 (323)
Q Consensus       232 wd~~~-------~----~~---~----~~~~~~~~~~~v~~~~~~--p~g~~~d~~l~~~~~~~~~~~~~~~~~-----~  286 (323)
                      |..++       .    +.   .    ..+ .......+++++++  ...    +.|++.+-...+.++-+...     .
T Consensus       129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f-~~~v~~SaWGLdIh~~~~~----rlIAVSsNs~~VTVFaf~l~~~r~~~  203 (717)
T PF08728_consen  129 YYTETIIEAIERFSEDNDSGFSRLKIKPFF-HLRVGASAWGLDIHDYKKS----RLIAVSSNSQEVTVFAFALVDERFYH  203 (717)
T ss_pred             EEHHHHHHHHHhhccccccccccccCCCCe-EeecCCceeEEEEEecCcc----eEEEEecCCceEEEEEEecccccccc
Confidence            96421       1    00   0    000 11234578899998  655    78888887777777665442     1


Q ss_pred             --CCCCccceeEEEEeeCC---C---eeEeeecCCeEEEEEe
Q psy11524        287 --DKPDTGSVYDLVWSSDA---T---QIAGACANGSLLLGTI  320 (323)
Q Consensus       287 --~~~~~~~v~~~~~s~~g---~---~l~s~~~dg~i~~~~l  320 (323)
                        ...|...|-+++|-++.   .   .|++++-.|.+.+|++
T Consensus       204 ~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  204 VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence              11235678899998764   2   7888999999999988

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.39  E-value=2.4  Score=22.70  Aligned_cols=23  Identities=26%  Similarity=0.333  Sum_probs=17.3

Q ss_pred             cCCCEEEEEeC--CeEEEEeCCCCe
Q psy11524        176 PGGDMFAVGSY--NTLRLCDKVGWS  198 (323)
Q Consensus       176 p~~~~l~~~~~--~~i~i~d~~~~~  198 (323)
                      |+++.++++..  +.|.++|..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~   25 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNK   25 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCe
Confidence            67888777776  399999986543

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=87.81  E-value=20  Score=32.10  Aligned_cols=134  Identities=10%  Similarity=0.041  Sum_probs=66.3

Q ss_pred             eEEEEeCCCCceeEeeccCCC-eEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCc---eeEEEEecCCC
Q psy11524        104 LVIKPLSPNNKATKWQAHDGL-ILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHP---ISSLAWAPGGD  179 (323)
Q Consensus       104 ~~v~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~---v~~~~~~p~~~  179 (323)
                      ...+++|..+.++........ ...+...++|.+++...  ..+.   .+|+.|+.+.........   -..+...|+|+
T Consensus       128 ~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~---e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn  202 (477)
T PF05935_consen  128 SYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLY---EIDLLGKVIWEYDLPGGYYDFHHDIDELPNGN  202 (477)
T ss_dssp             EEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEE---EE-TT--EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred             ceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC--CceE---EEcCCCCEEEeeecCCcccccccccEECCCCC
Confidence            567778877775443222211 11166778998887655  6677   889888877665443322   35677888999


Q ss_pred             EEEEEe--------------CCeEEEEeCCCCeeee------c-------------------CCCC--ccEEEEEEcCCC
Q psy11524        180 MFAVGS--------------YNTLRLCDKVGWSHSL------D-------------------KPDT--GSVYDLVWSNDA  218 (323)
Q Consensus       180 ~l~~~~--------------~~~i~i~d~~~~~~~~------~-------------------~~~~--~~v~~~~~~~~~  218 (323)
                      +|+.+.              .|.|..+|..+..+..      +                   ....  -.+.++.+.+..
T Consensus       203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~d  282 (477)
T PF05935_consen  203 LLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSD  282 (477)
T ss_dssp             EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTT
T ss_pred             EEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCC
Confidence            887666              1244444422221110      0                   0011  137899999944


Q ss_pred             CEEEEEec-Cc-EEEEEcCCCceeee
Q psy11524        219 TQIAGACA-NV-IHIFDISSSSSSNV  242 (323)
Q Consensus       219 ~~l~~~~~-d~-i~iwd~~~~~~~~~  242 (323)
                      ..|+..+. -. |...|.++++....
T Consensus       283 d~iivSsR~~s~V~~Id~~t~~i~Wi  308 (477)
T PF05935_consen  283 DSIIVSSRHQSAVIKIDYRTGKIKWI  308 (477)
T ss_dssp             TEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred             CeEEEEcCcceEEEEEECCCCcEEEE
Confidence            44544444 44 88888777776654

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG4441|consensus

Probab=87.50  E-value=23  Score=32.51  Aligned_cols=153  Identities=12%  Similarity=0.082  Sum_probs=79.2

Q ss_pred             CCEEEEEEcCCCCeEEEEeeCC-----eEEEEeCCCCce----eEeeccCCCeEEEEECCCCCEEEEEcCCCc-----eE
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAKS-----LVIKPLSPNNKA----TKWQAHDGLILKVAWCSSTDLILSGGEDCK-----YK  147 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~~-----~~v~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-----i~  147 (323)
                      ..-.+++.. +|...++||.+.     ..+..||.....    ..+...........+  +|...|+|+.||.     +.
T Consensus       323 r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE  399 (571)
T KOG4441|consen  323 RCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVE  399 (571)
T ss_pred             cccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEE
Confidence            333444444 345666666662     357778876652    111111122211221  5788888988864     55


Q ss_pred             eeeEEeCCCCeeeEeecCCCceeEEEEe-cCCCEEEEEeC-------CeEEEEeCCCCeeeecCCCCc--cEEEEEEcCC
Q psy11524        148 ASFVWDTDGRQLYSSLTHDHPISSLAWA-PGGDMFAVGSY-------NTLRLCDKVGWSHSLDKPDTG--SVYDLVWSND  217 (323)
Q Consensus       148 ~i~v~d~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~~~~~-------~~i~i~d~~~~~~~~~~~~~~--~v~~~~~~~~  217 (323)
                         .||.....-.............+.. -+|.+.++|+.       +.+..||..+..-....+...  .-..++. -+
T Consensus       400 ---~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~  475 (571)
T KOG4441|consen  400 ---CYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LN  475 (571)
T ss_pred             ---EecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-EC
Confidence               7777654433333222233333222 26777777773       247789976543332222111  1112222 25


Q ss_pred             CCEEEEEecCc------EEEEEcCCCceee
Q psy11524        218 ATQIAGACANV------IHIFDISSSSSSN  241 (323)
Q Consensus       218 ~~~l~~~~~d~------i~iwd~~~~~~~~  241 (323)
                      +...+.|+.|+      +..||..+.+...
T Consensus       476 ~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~  505 (571)
T KOG4441|consen  476 GKIYVVGGFDGTSALSSVERYDPETNQWTM  505 (571)
T ss_pred             CEEEEECCccCCCccceEEEEcCCCCceeE
Confidence            66777777653      6778888776554

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=87.30  E-value=10  Score=30.19  Aligned_cols=116  Identities=15%  Similarity=0.093  Sum_probs=64.3

Q ss_pred             eEEEEECCCCCEEEEEcCCCceEeeeEEeCCC---CeeeE-----eecCCCceeEEEEecCCCEEEEEeC-C-eEEEEeC
Q psy11524        125 ILKVAWCSSTDLILSGGEDCKYKASFVWDTDG---RQLYS-----SLTHDHPISSLAWAPGGDMFAVGSY-N-TLRLCDK  194 (323)
Q Consensus       125 v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~---~~~~~-----~~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~  194 (323)
                      +.+-.+.|||++|.+|+...-.+.+.+++...   .+-..     +....- --+...-|||+.|+.|+. . ...+|..
T Consensus        69 CSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW-YpT~~~L~DG~vlIvGG~~~~t~E~~P~  147 (243)
T PF07250_consen   69 CSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRW-YPTATTLPDGRVLIVGGSNNPTYEFWPP  147 (243)
T ss_pred             ccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCc-cccceECCCCCEEEEeCcCCCcccccCC
Confidence            34456788999999988632222222777632   11111     111111 112334579999999988 4 6777775


Q ss_pred             CC--C-eee--ecCC----CC-ccEEEEEEcCCCCEEEEEecCcEEEEEcCCCceeee
Q psy11524        195 VG--W-SHS--LDKP----DT-GSVYDLVWSNDATQIAGACANVIHIFDISSSSSSNV  242 (323)
Q Consensus       195 ~~--~-~~~--~~~~----~~-~~v~~~~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~  242 (323)
                      ..  . ...  .+..    .. ..--.+...|+|+.++.+..+ -.|||..+.+.++.
T Consensus       148 ~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~-s~i~d~~~n~v~~~  204 (243)
T PF07250_consen  148 KGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG-SIIYDYKTNTVVRT  204 (243)
T ss_pred             ccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC-cEEEeCCCCeEEee
Confidence            32  1 111  1111    11 112356678999988877655 45568887776665

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=87.24  E-value=21  Score=31.88  Aligned_cols=74  Identities=16%  Similarity=0.065  Sum_probs=37.8

Q ss_pred             EEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCeeeecCCCCc---cEEEEEEcCCCCEEEEEe
Q psy11524        151 VWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLDKPDTG---SVYDLVWSNDATQIAGAC  225 (323)
Q Consensus       151 v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~  225 (323)
                      ++|.+|..+..+.........+...++|.+++... ..++.+|+.++.+....-...   .=..+..-|+|++|+.+.
T Consensus       132 ~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~  208 (477)
T PF05935_consen  132 LIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLILAS  208 (477)
T ss_dssp             EEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEE
T ss_pred             EECCCccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEEEe
Confidence            77887777766654433332266778887765444 788899988775443221111   124566778998888776

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=87.23  E-value=21  Score=31.70  Aligned_cols=138  Identities=12%  Similarity=0.067  Sum_probs=76.5

Q ss_pred             cCCCEEEEEeC--CeEEEEeCC-CCeeeecCCCCccEEEEEEcCCC--------CEEEEEecCcEEEEEcC-CCceeeee
Q psy11524        176 PGGDMFAVGSY--NTLRLCDKV-GWSHSLDKPDTGSVYDLVWSNDA--------TQIAGACANVIHIFDIS-SSSSSNVT  243 (323)
Q Consensus       176 p~~~~l~~~~~--~~i~i~d~~-~~~~~~~~~~~~~v~~~~~~~~~--------~~l~~~~~d~i~iwd~~-~~~~~~~~  243 (323)
                      .+..+|+.-+.  +.++-.|+. ++.+.....|.. + -+.|.|+.        +.|+-.+..+|.-.|.+ .|..+.. 
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v-  553 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV-  553 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceee-
Confidence            34555554444  377778876 443333333333 3 56666643        23444444445555654 3333322 


Q ss_pred             cCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        244 APLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       244 ~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                        ......++.-.|+..+....++|++++..|.+++++--..    ..+.-+..|..+..+.+|+++++.+.. .+.+-+
T Consensus       554 --~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d  630 (776)
T COG5167         554 --VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTD  630 (776)
T ss_pred             --eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEe
Confidence              2222233333444333233479999999999999875432    233337889999999999987766543 344433

>PRK13613 lipoprotein LpqB; Provisional

Probab=86.80  E-value=26  Score=32.35  Aligned_cols=143  Identities=15%  Similarity=0.219  Sum_probs=78.5

Q ss_pred             ceeEEEEecCCCEEEEEeC-C-eEEEEeCCCCee------eecCCCCccEEEEEEcCCCCEEEEEec----Cc-EEEEEc
Q psy11524        168 PISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSH------SLDKPDTGSVYDLVWSNDATQIAGACA----NV-IHIFDI  234 (323)
Q Consensus       168 ~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~-i~iwd~  234 (323)
                      .+.+++.++++..++.... + .+++..+.....      ...  ....++...|.++| .+-+...    .. +++.. 
T Consensus       364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~--~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~-  439 (599)
T PRK13613        364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT--ADGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQ-  439 (599)
T ss_pred             CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee--ccCcccCCcCcCCC-CEEEecCCCCCceEEEEEc-
Confidence            6778999999998887776 4 677766532211      122  13346777888877 4444422    22 55554 


Q ss_pred             CCCceeeeecCCCCc-cceEEEEEccCCCCccceEEE-EeCC--CCeEEEecccc------------cCCCCccceeEEE
Q psy11524        235 SSSSSSNVTAPLSHS-HEITQLAVNQTGSLQERHVAF-IDKN--RDLYLSMWSHS------------LDKPDTGSVYDLV  298 (323)
Q Consensus       235 ~~~~~~~~~~~~~~~-~~v~~~~~~p~g~~~d~~l~~-~~~~--~~~~~~~~~~~------------~~~~~~~~v~~~~  298 (323)
                      .+++....- ..... ..|..+..|+||-    .+++ .+..  +.+++--+...            +... ...+.+++
T Consensus       440 ~~G~~~~V~-~~~l~g~~I~~lrvSrDG~----RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~-l~~v~~~~  513 (599)
T PRK13613        440 GDGEPVEVR-TPELDGHRVVAVRVARDGV----RVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPE-LEDVTDMS  513 (599)
T ss_pred             CCCcEEEee-ccccCCCEeEEEEECCCcc----EEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccC-CCccceeE
Confidence            245543221 12233 3899999999994    3333 2221  12222111110            1111 23589999


Q ss_pred             EeeCCCeeEeee-cCCeEEEEEe
Q psy11524        299 WSSDATQIAGAC-ANGSLLLGTI  320 (323)
Q Consensus       299 ~s~~g~~l~s~~-~dg~i~~~~l  320 (323)
                      |..++.+++.+. .++..-+|.+
T Consensus       514 W~~~~sL~Vlg~~~~~~~~v~~v  536 (599)
T PRK13613        514 WAGDSQLVVLGREEGGVQQARYV  536 (599)
T ss_pred             EcCCCEEEEEeccCCCCcceEEE
Confidence            999998777553 3334445543

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=85.70  E-value=25  Score=31.11  Aligned_cols=55  Identities=11%  Similarity=0.123  Sum_probs=36.9

Q ss_pred             cCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCee---eEe----e-cCCCceeEEEEecCC
Q psy11524        121 HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQL---YSS----L-THDHPISSLAWAPGG  178 (323)
Q Consensus       121 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~---~~~----~-~~~~~v~~~~~~p~~  178 (323)
                      .-...+.|+|.|||++|++--..|+|+   +++..+...   ..+    . ........|+++|+-
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~---~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKIL---RVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEE---EEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            334568999999998777665579999   887643221   111    1 135678899999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=85.40  E-value=6.8  Score=37.21  Aligned_cols=83  Identities=5%  Similarity=-0.038  Sum_probs=52.4

Q ss_pred             EEEEc-CCCceEeeeEEeCCCCeeeEe-ecCCCceeEEEEecCCCEEEEE-eC----C--eEEEEeCCCC--eeeecCCC
Q psy11524        137 ILSGG-EDCKYKASFVWDTDGRQLYSS-LTHDHPISSLAWAPGGDMFAVG-SY----N--TLRLCDKVGW--SHSLDKPD  205 (323)
Q Consensus       137 l~~~~-~d~~i~~i~v~d~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~~~-~~----~--~i~i~d~~~~--~~~~~~~~  205 (323)
                      ||... ..+.+.   +-|.++.....+ .....++.+.+|||||+.|+.+ +.    +  .|++-|+.+.  .+..+.-.
T Consensus       321 iAfv~~~~~~L~---~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve  397 (912)
T TIGR02171       321 LAFRNDVTGNLA---YIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVE  397 (912)
T ss_pred             EEEEEcCCCeEE---EEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecc
Confidence            44443 234666   888887666655 5678889999999999999983 22    1  5888888643  22222223


Q ss_pred             CccEEEEEEcCCCCEEE
Q psy11524        206 TGSVYDLVWSNDATQIA  222 (323)
Q Consensus       206 ~~~v~~~~~~~~~~~l~  222 (323)
                      ...|..-...++|...+
T Consensus       398 ~aaiprwrv~e~gdt~i  414 (912)
T TIGR02171       398 NAAIPRWRVLENGDTVI  414 (912)
T ss_pred             cccccceEecCCCCeEE
Confidence            44555555566665433

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=85.12  E-value=16  Score=28.39  Aligned_cols=101  Identities=15%  Similarity=0.226  Sum_probs=59.0

Q ss_pred             CeEEEEeeCCeEEEEeCCCCc----eeEeeccCCCeEEEEECCCCCEEEEEcCCC------ceEeeeEEeCC---CCeee
Q psy11524         94 NKVLLTQAKSLVIKPLSPNNK----ATKWQAHDGLILKVAWCSSTDLILSGGEDC------KYKASFVWDTD---GRQLY  160 (323)
Q Consensus        94 ~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~~i~v~d~~---~~~~~  160 (323)
                      +.|+.+... ..|.+|++.+.    ...+.. -+.|..+.++..|++|+|--++.      .++..+=|...   ..++.
T Consensus        29 d~Lfva~~g-~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~  106 (215)
T PF14761_consen   29 DALFVAASG-CKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR  106 (215)
T ss_pred             ceEEEEcCC-CEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence            344333333 47889987733    334433 37899999999999999875432      34411223331   11111


Q ss_pred             -Eee---------------------cCCCceeEEEEecCCCEEEEEeCCeEEEEeCCC
Q psy11524        161 -SSL---------------------THDHPISSLAWAPGGDMFAVGSYNTLRLCDKVG  196 (323)
Q Consensus       161 -~~~---------------------~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~  196 (323)
                       .+.                     ....++.+++..|-.--|++|+.+.+.+|.+..
T Consensus       107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~  164 (215)
T PF14761_consen  107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKY  164 (215)
T ss_pred             EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEE
Confidence             111                     123456778888843346777778888888653

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=83.94  E-value=39  Score=31.92  Aligned_cols=33  Identities=9%  Similarity=0.129  Sum_probs=24.4

Q ss_pred             eccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC
Q psy11524        119 QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT  154 (323)
Q Consensus       119 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~  154 (323)
                      -.-...|...+||.|.+.++....+.+|.   +++-
T Consensus       109 G~v~nGIvaa~wS~DE~~~cvvt~~r~il---~~~k  141 (1243)
T COG5290         109 GKVSNGIVAASWSADEKTWCVVTSTREIL---LFDK  141 (1243)
T ss_pred             ccccCceEEEeeccCCceEEEEEcCceEE---EEec
Confidence            34467788999999998777776677776   6553

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=83.26  E-value=21  Score=33.33  Aligned_cols=99  Identities=12%  Similarity=0.138  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCCCceEeeeEEeCC--------C----Ce--------eeEeecCCCceeEEEEe--cCCCEEEEEeCC-eE
Q psy11524        133 STDLILSGGEDCKYKASFVWDTD--------G----RQ--------LYSSLTHDHPISSLAWA--PGGDMFAVGSYN-TL  189 (323)
Q Consensus       133 ~~~~l~~~~~d~~i~~i~v~d~~--------~----~~--------~~~~~~~~~~v~~~~~~--p~~~~l~~~~~~-~i  189 (323)
                      +...|+.+..||.|.   +|.++        .    ..        ..-.......+++++++  ...++||+++.. .|
T Consensus       113 ~~EVLl~c~DdG~V~---~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~V  189 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVL---AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEV  189 (717)
T ss_pred             CeeEEEEEecCCeEE---EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceE
Confidence            346788999999999   99751        1    00        00111234578999998  777888888774 55


Q ss_pred             EEE--eCCCCeee--ecCCCCccEEEEEEcCCC---C---EEEEEecCc-EEEEEc
Q psy11524        190 RLC--DKVGWSHS--LDKPDTGSVYDLVWSNDA---T---QIAGACANV-IHIFDI  234 (323)
Q Consensus       190 ~i~--d~~~~~~~--~~~~~~~~v~~~~~~~~~---~---~l~~~~~d~-i~iwd~  234 (323)
                      .||  .+......  ....+...|.+++|-++.   .   ++++++-.| +.+|++
T Consensus       190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            555  44321111  122355668889987643   2   677788888 888776

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=83.22  E-value=24  Score=28.95  Aligned_cols=147  Identities=13%  Similarity=0.054  Sum_probs=83.3

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--e--eEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--A--TKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT  154 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~  154 (323)
                      ...+-+..+.++.  ++...+..+ .-+++.|....  .  ..+..-.+--.++..  .|++...+..|.-..   +.|+
T Consensus        84 ~~~~l~~Dv~vse--~yvyvad~s-sGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfL---ivdv  155 (370)
T COG5276          84 NARDLFADVRVSE--EYVYVADWS-SGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFL---IVDV  155 (370)
T ss_pred             ehhhhhheeEecc--cEEEEEcCC-CceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEE---EEEC
Confidence            3456667777764  455555444 35777777654  1  112222233344444  478888887555555   7888


Q ss_pred             CC----CeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecCCC---CccEEEEEEcCCCCEEEEEec
Q psy11524        155 DG----RQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDKPD---TGSVYDLVWSNDATQIAGACA  226 (323)
Q Consensus       155 ~~----~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~  226 (323)
                      ..    ...............++.|  |++-..+..| -+.+.|+.......+.++   ...+.++..+++-.+++...+
T Consensus       156 sdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e  233 (370)
T COG5276         156 SDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE  233 (370)
T ss_pred             CCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc
Confidence            42    2222333334444677776  7777777665 899999876543333332   336888888877655544332


Q ss_pred             CcEEEEEcCC
Q psy11524        227 NVIHIFDISS  236 (323)
Q Consensus       227 d~i~iwd~~~  236 (323)
                       ++.+-|..+
T Consensus       234 -gvlivd~s~  242 (370)
T COG5276         234 -GVLIVDVSG  242 (370)
T ss_pred             -ceEEEecCC
Confidence             255555443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=83.02  E-value=27  Score=29.39  Aligned_cols=96  Identities=17%  Similarity=0.176  Sum_probs=58.4

Q ss_pred             eEEEEECCCCCEEEEEcCC------CceEeeeEEeCCCCeeeEee---------------cCCCceeEEEEecCCCEEEE
Q psy11524        125 ILKVAWCSSTDLILSGGED------CKYKASFVWDTDGRQLYSSL---------------THDHPISSLAWAPGGDMFAV  183 (323)
Q Consensus       125 v~~~~~~~~~~~l~~~~~d------~~i~~i~v~d~~~~~~~~~~---------------~~~~~v~~~~~~p~~~~l~~  183 (323)
                      ..+|++.++|.++++.-.+      ..|.   .++.+++....+.               ......-+++++|+|+.|++
T Consensus        87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~---~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~  163 (326)
T PF13449_consen   87 PEGIAVPPDGSFWISSEGGRTGGIPPRIR---RFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA  163 (326)
T ss_pred             hhHeEEecCCCEEEEeCCccCCCCCCEEE---EECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence            4478887788877776656      6677   8887665544331               13346789999999996665


Q ss_pred             EeCC--------e-------EEEE--eCCC-C-ee---ee-cCC-----CCccEEEEEEcCCCCEEEE
Q psy11524        184 GSYN--------T-------LRLC--DKVG-W-SH---SL-DKP-----DTGSVYDLVWSNDATQIAG  223 (323)
Q Consensus       184 ~~~~--------~-------i~i~--d~~~-~-~~---~~-~~~-----~~~~v~~~~~~~~~~~l~~  223 (323)
                      +.+.        .       ++++  |... . ..   .. +..     ....+..+.+-+++++|+.
T Consensus       164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            5321        1       4554  4432 1 11   11 111     3456888999999886654

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=82.74  E-value=25  Score=28.83  Aligned_cols=94  Identities=16%  Similarity=0.270  Sum_probs=56.9

Q ss_pred             eEEEEeCCCCceeE--eeccCCCeEEEEECCCCCEEEEEcC--CC-ceEeeeEEeCCCCeeeEeec-----CCCceeEEE
Q psy11524        104 LVIKPLSPNNKATK--WQAHDGLILKVAWCSSTDLILSGGE--DC-KYKASFVWDTDGRQLYSSLT-----HDHPISSLA  173 (323)
Q Consensus       104 ~~v~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~--d~-~i~~i~v~d~~~~~~~~~~~-----~~~~v~~~~  173 (323)
                      ..|.+||.....-.  -.+-.+.|.++.|..+.++++.|.-  ++ ....+..||.+...-..+..     -++++..+.
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~   95 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT   95 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence            46888887665221  2235678999999866666666641  22 33345599998776655554     247788887


Q ss_pred             Eec-CCC-EEEEEeC--C--eEEEEeCCCC
Q psy11524        174 WAP-GGD-MFAVGSY--N--TLRLCDKVGW  197 (323)
Q Consensus       174 ~~p-~~~-~l~~~~~--~--~i~i~d~~~~  197 (323)
                      +.. |+. .++.|..  +  .|..||-..+
T Consensus        96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W  125 (281)
T PF12768_consen   96 FISNDGSNFWVAGRSANGSTFLMKYDGSSW  125 (281)
T ss_pred             eeccCCceEEEeceecCCCceEEEEcCCce
Confidence            754 343 4444432  2  6888875544

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=82.47  E-value=24  Score=28.48  Aligned_cols=182  Identities=9%  Similarity=-0.006  Sum_probs=99.6

Q ss_pred             cceeeecCCCC--CEEEEEEcCCCCeEEEEeeCC-eEEEEeCCCCc-eeEeeccCCC--eEEEEECCCCCEEEEEcCCCc
Q psy11524         72 LSLCRTLNVSP--PVYSAAWSPDSNKVLLTQAKS-LVIKPLSPNNK-ATKWQAHDGL--ILKVAWCSSTDLILSGGEDCK  145 (323)
Q Consensus        72 ~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~~~~-~~v~~~~~~~~-~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~~  145 (323)
                      .++.+++.|..  ....+.|..+|..+-+++..+ ..|+.++..+. ......-+..  -..++.. +++.....-.++.
T Consensus        33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~  111 (264)
T PF05096_consen   33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGT  111 (264)
T ss_dssp             EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSE
T ss_pred             eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCe
Confidence            35566666643  456788877888777776543 46888887765 2222111111  2234443 2344455567888


Q ss_pred             eEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCCeee-ec--CCCC---ccEEEEEEcCC
Q psy11524        146 YKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGWSHS-LD--KPDT---GSVYDLVWSND  217 (323)
Q Consensus       146 i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~~-~~--~~~~---~~v~~~~~~~~  217 (323)
                      ..   +||.+ -+.+..+. ..+.=..++  .|++.|+.+.. +.++++|..+.... ..  ....   ..++.+.|- +
T Consensus       112 ~f---~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~  184 (264)
T PF05096_consen  112 GF---VYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-N  184 (264)
T ss_dssp             EE---EEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-T
T ss_pred             EE---EEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-c
Confidence            88   99996 44444443 344556666  34555554444 69999997654221 11  1111   246677776 5


Q ss_pred             CCEEEEEecCc-EEEEEcCCCceeeeecCC-------------CCccceEEEEEccCC
Q psy11524        218 ATQIAGACANV-IHIFDISSSSSSNVTAPL-------------SHSHEITQLAVNQTG  261 (323)
Q Consensus       218 ~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~-------------~~~~~v~~~~~~p~g  261 (323)
                      |...|=.-... |...|..+|+....+-+.             ....-.+.+|+.|..
T Consensus       185 G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~  242 (264)
T PF05096_consen  185 GKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPET  242 (264)
T ss_dssp             TEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTT
T ss_pred             CEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCC
Confidence            65555444555 888899999877643111             113457899999987

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=82.40  E-value=29  Score=29.25  Aligned_cols=54  Identities=15%  Similarity=0.129  Sum_probs=37.6

Q ss_pred             cEEEEEEcCCCCEEEEEecC------c-EEEEEcCCCceeeeecC-------------CCCccceEEEEEccCCC
Q psy11524        208 SVYDLVWSNDATQIAGACAN------V-IHIFDISSSSSSNVTAP-------------LSHSHEITQLAVNQTGS  262 (323)
Q Consensus       208 ~v~~~~~~~~~~~l~~~~~d------~-i~iwd~~~~~~~~~~~~-------------~~~~~~v~~~~~~p~g~  262 (323)
                      ...++++.++|.++++.-.+      . |+-++.. |+....+.+             ...+....+++++|+|+
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~  159 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGR  159 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCC
Confidence            34578887888888887777      7 8888866 665443211             12345678999999984

>PHA03098 kelch-like protein; Provisional

Probab=82.39  E-value=39  Score=30.74  Aligned_cols=147  Identities=8%  Similarity=0.003  Sum_probs=68.8

Q ss_pred             CCCeEEEEeeCC----eEEEEeCCCCceeE----eeccCCCeEEEEECCCCCEEEEEcCC--C-ceEeeeEEeCCCCeee
Q psy11524         92 DSNKVLLTQAKS----LVIKPLSPNNKATK----WQAHDGLILKVAWCSSTDLILSGGED--C-KYKASFVWDTDGRQLY  160 (323)
Q Consensus        92 ~~~~l~~~~~~~----~~v~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d--~-~i~~i~v~d~~~~~~~  160 (323)
                      +++.++.||.+.    ..+..||.....-.    +....... +++ .-+++..+.|+.+  + ....+..||+....-.
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            566666676442    24677776654211    11111111 122 2256667777632  1 1223348998644333


Q ss_pred             EeecCCCce-eEEEEecCCCEEEEEeCC---------eEEEEeCCCCeeeecCC--CCccEEEEEEcCCCCEEEEEecC-
Q psy11524        161 SSLTHDHPI-SSLAWAPGGDMFAVGSYN---------TLRLCDKVGWSHSLDKP--DTGSVYDLVWSNDATQIAGACAN-  227 (323)
Q Consensus       161 ~~~~~~~~v-~~~~~~p~~~~l~~~~~~---------~i~i~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-  227 (323)
                      .......+. ...+...++..++.|+.+         .+.+||..+..-.....  ....-.+++. .+++.++.|+.+ 
T Consensus       420 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~  498 (534)
T PHA03098        420 KGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKY  498 (534)
T ss_pred             ecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcC
Confidence            322211111 111222356666666541         28889977543332221  1111111221 266666777653 


Q ss_pred             ----c-EEEEEcCCCceee
Q psy11524        228 ----V-IHIFDISSSSSSN  241 (323)
Q Consensus       228 ----~-i~iwd~~~~~~~~  241 (323)
                          . +.+||..+.+...
T Consensus       499 ~~~~~~v~~yd~~~~~W~~  517 (534)
T PHA03098        499 EYYINEIEVYDDKTNTWTL  517 (534)
T ss_pred             CcccceeEEEeCCCCEEEe
Confidence                4 8888888765443

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=82.17  E-value=27  Score=28.71  Aligned_cols=132  Identities=14%  Similarity=0.110  Sum_probs=78.4

Q ss_pred             cCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC---CeeeEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCC
Q psy11524        121 HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG---RQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVG  196 (323)
Q Consensus       121 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~---~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~  196 (323)
                      -.+-+..+.++  ++++..+..+.-++   +.|+..   ..+..+....+...++..+  |++..++.. +-+.+.|+..
T Consensus        85 ~~~l~~Dv~vs--e~yvyvad~ssGL~---IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsd  157 (370)
T COG5276          85 ARDLFADVRVS--EEYVYVADWSSGLR---IVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSD  157 (370)
T ss_pred             hhhhhheeEec--ccEEEEEcCCCceE---EEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCC
Confidence            34556677776  45777788888899   999842   1222222223445555554  888888886 4788889875


Q ss_pred             CeeeecCC----CCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCC
Q psy11524        197 WSHSLDKP----DTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTG  261 (323)
Q Consensus       197 ~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g  261 (323)
                      ....++.+    .......++.|  |++...+..|+ +.+-|+.....-.-+.-......+.++..+++.
T Consensus       158 pssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr  225 (370)
T COG5276         158 PSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNR  225 (370)
T ss_pred             CCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCe
Confidence            43222221    22223455555  66777888888 999998764322210012223367777777764

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=82.15  E-value=48  Score=31.69  Aligned_cols=106  Identities=13%  Similarity=0.078  Sum_probs=55.2

Q ss_pred             CCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCC--------ceeEEEEec----------------CCCEEEEEeCC-
Q psy11524        134 TDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDH--------PISSLAWAP----------------GGDMFAVGSYN-  187 (323)
Q Consensus       134 ~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~--------~v~~~~~~p----------------~~~~l~~~~~~-  187 (323)
                      +..|+.++.++.|.   -.|.+ ++++.++.....        ....+++-.                .+..++.++.| 
T Consensus       194 gg~lYv~t~~~~V~---ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg  270 (764)
T TIGR03074       194 GDTLYLCTPHNKVI---ALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA  270 (764)
T ss_pred             CCEEEEECCCCeEE---EEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC
Confidence            45666677777777   77763 566655543211        012233221                23356666665 


Q ss_pred             eEEEEeCCCCeeeecCCCCccE-------------EEEEEcC--CCCEEEEEec----------Cc-EEEEEcCCCceee
Q psy11524        188 TLRLCDKVGWSHSLDKPDTGSV-------------YDLVWSN--DATQIAGACA----------NV-IHIFDISSSSSSN  241 (323)
Q Consensus       188 ~i~i~d~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------d~-i~iwd~~~~~~~~  241 (323)
                      .+.-.|.++.+........+.+             ..+.-.|  .+..+++++.          +| |+-+|.++|+.+-
T Consensus       271 ~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W  350 (764)
T TIGR03074       271 RLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW  350 (764)
T ss_pred             eEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence            8888886643332211111111             1112222  2335555542          57 9999999999876


Q ss_pred             e
Q psy11524        242 V  242 (323)
Q Consensus       242 ~  242 (323)
                      .
T Consensus       351 ~  351 (764)
T TIGR03074       351 A  351 (764)
T ss_pred             E
Confidence            5

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PHA02790 Kelch-like protein; Provisional

Probab=81.79  E-value=39  Score=30.32  Aligned_cols=108  Identities=9%  Similarity=-0.070  Sum_probs=53.6

Q ss_pred             CCCEEEEEcCCC--ceEeeeEEeCCCCeeeEeecCCCce--eEEEEecCCCEEEEEeC-C--eEEEEeCCCCeeeecCCC
Q psy11524        133 STDLILSGGEDC--KYKASFVWDTDGRQLYSSLTHDHPI--SSLAWAPGGDMFAVGSY-N--TLRLCDKVGWSHSLDKPD  205 (323)
Q Consensus       133 ~~~~l~~~~~d~--~i~~i~v~d~~~~~~~~~~~~~~~v--~~~~~~p~~~~l~~~~~-~--~i~i~d~~~~~~~~~~~~  205 (323)
                      ++..+++|+.++  ....++.||.....-..+..-..+-  .+++ .-++...+.|+. +  .+..||.....-....+.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            345566676543  1223337887654433332211111  1222 236777777775 2  688888764433322222


Q ss_pred             CccE-EEEEEcCCCCEEEEEecC---c-EEEEEcCCCceee
Q psy11524        206 TGSV-YDLVWSNDATQIAGACAN---V-IHIFDISSSSSSN  241 (323)
Q Consensus       206 ~~~v-~~~~~~~~~~~l~~~~~d---~-i~iwd~~~~~~~~  241 (323)
                      ..+. ......-+|+..+.|+.+   . +..||.++.+...
T Consensus       350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~  390 (480)
T PHA02790        350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQF  390 (480)
T ss_pred             CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEe
Confidence            2111 112222367766776654   3 7788987765443

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=81.58  E-value=4.6  Score=19.61  Aligned_cols=25  Identities=12%  Similarity=0.017  Sum_probs=19.7

Q ss_pred             eeEEEEeeCCCeeEeeecCCeEEEE
Q psy11524        294 VYDLVWSSDATQIAGACANGSLLLG  318 (323)
Q Consensus       294 v~~~~~s~~g~~l~s~~~dg~i~~~  318 (323)
                      ..+++++++|+.+++=....+|.++
T Consensus         4 P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    4 PHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcEEEEeCCCCEEEEECCCCEEEEC
Confidence            4678888899888888888877764

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	323
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.98
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.89
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.88
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.87
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.87
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.86
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.86
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.85
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.83
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.83
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.82
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.82
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.82
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.82
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.81
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.79
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.78
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.77
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.77
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.77
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.76
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.75
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.75
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.75
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.71
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.71
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.71
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.69
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.68
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.68
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.66
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.65
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.64
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.64
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.62
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.62
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.62
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.61
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.61
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.6
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.6
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.59
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.59
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.57
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.56
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.55
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.54
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.52
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.51
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.51
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.5
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.5
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.48
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.45
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.44
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.43
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.37
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.35
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.35
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.35
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.32
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.31
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.29
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.27
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.25
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.22
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.12
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.12
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.11
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.09
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.09
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.08
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.07
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.03
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.01
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.94
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.93
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.9
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.86
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.8
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.78
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.77
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.76
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.75
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.75
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.73
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.72
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.71
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.7
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.68
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.68
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.67
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.66
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.64
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.63
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.63
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.59
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.59
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.59
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.57
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.56
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.53
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.52
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.5
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.48
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.48
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.46
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.4
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.37
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.37
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.36
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.32
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.3
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.3
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.29
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.26
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.25
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.25
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.24
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.21
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.17
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.13
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.12
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.1
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.1
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.09
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.08
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.07
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.07
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.05
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.05
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.02
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.02
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.97
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.96
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.91
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.9
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.87
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.8
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.75
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.74
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.73
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.72
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.7
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.6
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.57
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.55
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.54
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.5
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.48
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.44
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.43
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.36
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.33
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.3
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.12
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.03
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.56
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.53
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.51
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.39
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.35
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.33
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.65
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.63
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.33
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.2
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.6
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	94.24
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.17
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	93.92
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	93.88
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.84
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.47
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.33
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	92.89
3ott_A	758	Two-component system sensor histidine kinase; beta	92.74
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.45
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	91.87
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	91.8
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	91.65
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	91.65
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	91.36
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	90.35
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	89.65
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	88.97
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.68
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	88.13
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	83.85
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	83.21
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	81.51
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	81.11
3ott_A	758	Two-component system sensor histidine kinase; beta	80.48

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7e-44  Score=296.32  Aligned_cols=274  Identities=13%  Similarity=0.129  Sum_probs=237.7

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeeccccccccceeee----------c-CCCCCEEEEEEcCCCCeEEEEeeCCeEE
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRT----------L-NVSPPVYSAAWSPDSNKVLLTQAKSLVI  106 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v  106 (323)
                      ..+++|.+.|.+++|+|++..-...+++++.|++.++|..          + .|...|.+++|+|++..+++++.+ +.|
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D-~~i  104 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD-AHI  104 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT-SEE
T ss_pred             eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC-CcE
Confidence            4567999999999999875433356778877777776642          2 389999999999999999998877 599


Q ss_pred             EEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEE
Q psy11524        107 KPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAV  183 (323)
Q Consensus       107 ~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~  183 (323)
                      ++||....  ...+..|...+.+++|+|++++|++++.|+.|+   +|+++ ++....+..+...+.+++|+|++++|++
T Consensus       105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~---i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las  181 (321)
T 3ow8_A          105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVN---IFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS  181 (321)
T ss_dssp             EEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEE---EEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred             EEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEE---EEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence            99998765  566788888999999999999999999999999   99995 6777778888899999999999999999


Q ss_pred             EeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccC
Q psy11524        184 GSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQT  260 (323)
Q Consensus       184 ~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~  260 (323)
                      ++.| .|++||+++. .+..+.+|...|.+++|+|++++|++++.|+ |++||+++++...+  +.+|...|.+++|+|+
T Consensus       182 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~h~~~v~~~~~sp~  259 (321)
T 3ow8_A          182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT--LSGHASWVLNVAFCPD  259 (321)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTT
T ss_pred             EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEE--EcCCCCceEEEEECCC
Confidence            9996 9999998754 5567788999999999999999999999999 99999999998887  7899999999999999


Q ss_pred             CCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        261 GSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       261 g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +    ..+++++.++.+++|++...    .+..|...|.+++|+|+|++|++++.||.|++|++.
T Consensus       260 ~----~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          260 D----THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             S----SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             C----CEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            8    88999999999999998765    455688999999999999999999999999999963

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.3e-43  Score=294.83  Aligned_cols=273  Identities=15%  Similarity=0.162  Sum_probs=234.0

Q ss_pred             eeeeeEeecccceeEeeEeccCCcceeeeeeccccccccceee--------ec-CCCCCEEEEEEcCCCCeEEEEeeCCe
Q psy11524         34 VKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCR--------TL-NVSPPVYSAAWSPDSNKVLLTQAKSL  104 (323)
Q Consensus        34 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~v~~~~~sp~~~~l~~~~~~~~  104 (323)
                      +....++++|.+.|.++.|+|++.    ++++++.|++.++|.        .+ .|...|.+++|+|++++|++++.+ +
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~----~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-~  119 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSR----LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD-N  119 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSS----EEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETT-C
T ss_pred             chhheeecCCCCceEEEEECCCCC----EEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCC-C
Confidence            345578999999999999999995    455555555555543        22 378899999999999999998877 6


Q ss_pred             EEEEeCCCCc------eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecC
Q psy11524        105 VIKPLSPNNK------ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPG  177 (323)
Q Consensus       105 ~v~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~  177 (323)
                      .+++|+....      ...+.+|.+.|.++.|++++. +++++.|++|+   +||++ ++.+..+.+|...|.+++|+|+
T Consensus       120 ~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~---~wd~~~~~~~~~~~~h~~~v~~~~~~~~  195 (340)
T 1got_B          120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCA---LWDIETGQQTTTFTGHTGDVMSLSLAPD  195 (340)
T ss_dssp             EEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEE---EEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             eEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEE---EEECCCCcEEEEEcCCCCceEEEEECCC
Confidence            9999997643      345788999999999998765 88999999999   99996 6677788899999999999999


Q ss_pred             CCEEEEEeCC-eEEEEeCCC-CeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEE
Q psy11524        178 GDMFAVGSYN-TLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQ  254 (323)
Q Consensus       178 ~~~l~~~~~~-~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~  254 (323)
                      ++++++++.| .|++||++. .....+.+|...|.+++|+|++++|++++.|+ |++||+++++.+..+....+...|.+
T Consensus       196 ~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~  275 (340)
T 1got_B          196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS  275 (340)
T ss_dssp             SSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             CCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence            9999999996 999999874 46667888999999999999999999999999 99999999888776433344568999


Q ss_pred             EEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        255 LAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       255 ~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      ++|+|++    ..++++..++.+.+|+....    ....|...|.+++|+|+|++|++|+.||.|++|+
T Consensus       276 ~~~s~~g----~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          276 VSFSKSG----RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECTTS----SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEECCCC----CEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            9999999    89999999999999998654    4567899999999999999999999999999996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-43  Score=304.85  Aligned_cols=270  Identities=15%  Similarity=0.177  Sum_probs=236.6

Q ss_pred             eeEeecccceeEeeEeccCCcceeeeeecccccccccee--------eecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEE
Q psy11524         37 HLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLC--------RTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIK  107 (323)
Q Consensus        37 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~  107 (323)
                      ...+.+|.++|.++.|+|++..    +++++.|++.++|        +.+. |...|.+++|+|++++|++|+.+ +.|+
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~----l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D-~~i~  175 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSV----MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD-MTIK  175 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSE----EEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETT-SCCC
T ss_pred             eEeecccCCcEEEEEEcCCCCE----EEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCC-CeEE
Confidence            3567899999999999999954    4455444444443        3443 89999999999999999998877 5999


Q ss_pred             EeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEE
Q psy11524        108 PLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVG  184 (323)
Q Consensus       108 ~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  184 (323)
                      +||..+.  ...+.+|...|.+++|+|++++|++++.|++|+   +||++ +..+..+.+|...|.+++|+|++.+|+++
T Consensus       176 iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~---~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~  252 (410)
T 1vyh_C          176 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK---MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC  252 (410)
T ss_dssp             EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEE---EEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             EEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEE---EEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEE
Confidence            9998765  567889999999999999999999999999999   99995 77788899999999999999999999999


Q ss_pred             eCC-eEEEEeCCC-CeeeecCCCCccEEEEEEcCC--------------------CCEEEEEecCc-EEEEEcCCCceee
Q psy11524        185 SYN-TLRLCDKVG-WSHSLDKPDTGSVYDLVWSND--------------------ATQIAGACANV-IHIFDISSSSSSN  241 (323)
Q Consensus       185 ~~~-~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~d~-i~iwd~~~~~~~~  241 (323)
                      +.| .|++||++. .....+..|...|.+++|+|+                    |.+|++++.|+ |++||+++++++.
T Consensus       253 s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~  332 (410)
T 1vyh_C          253 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM  332 (410)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE
T ss_pred             cCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence            997 999999875 455677789999999999996                    67899999999 9999999999988


Q ss_pred             eecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEE
Q psy11524        242 VTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLL  317 (323)
Q Consensus       242 ~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~  317 (323)
                      .  +.+|...|.+++|+|++    ..|+.++.++.+++|++...    ....|...|.+++|+|++++|++|+.||+|++
T Consensus       333 ~--~~~h~~~v~~v~~~~~g----~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~v  406 (410)
T 1vyh_C          333 T--LVGHDNWVRGVLFHSGG----KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV  406 (410)
T ss_dssp             E--EECCSSCEEEEEECSSS----SCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             E--EECCCCcEEEEEEcCCC----CEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence            8  68899999999999998    88999999999999998764    44568899999999999999999999999999


Q ss_pred             EEe
Q psy11524        318 GTI  320 (323)
Q Consensus       318 ~~l  320 (323)
                      |++
T Consensus       407 W~~  409 (410)
T 1vyh_C          407 WEC  409 (410)
T ss_dssp             EC-
T ss_pred             EeC
Confidence            986

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.8e-42  Score=286.60  Aligned_cols=274  Identities=16%  Similarity=0.179  Sum_probs=229.4

Q ss_pred             eeeeeEeecccceeEeeEeccCCcceeeeeeccccccccceee-------------ec-CCCCCEEEEEEcCCCCeEEEE
Q psy11524         34 VKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCR-------------TL-NVSPPVYSAAWSPDSNKVLLT   99 (323)
Q Consensus        34 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-~~~~~v~~~~~sp~~~~l~~~   99 (323)
                      +....++++|.+.|.+++|+|++.   .+++++++|++.++|.             .+ .|...|.+++|+|++++|+++
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~---~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~   83 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQP---NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA   83 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCT---TEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEEEEccccceEEEEEccCCCc---cEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEE
Confidence            445567899999999999999752   3556666666666553             22 489999999999999999999


Q ss_pred             eeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecC
Q psy11524        100 QAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPG  177 (323)
Q Consensus       100 ~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~  177 (323)
                      +.| +.|++||....  ...+.+|...|.+++|+|++++|++++.|++|+   +||++++.+..+.+|...+.+++|+|.
T Consensus        84 s~D-~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~---vwd~~~~~~~~~~~h~~~v~~~~~~~~  159 (319)
T 3frx_A           84 SWD-KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK---VWTIKGQCLATLLGHNDWVSQVRVVPN  159 (319)
T ss_dssp             ETT-SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEE---EEETTSCEEEEECCCSSCEEEEEECCC
T ss_pred             eCC-CEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEE---EEECCCCeEEEEeccCCcEEEEEEccC
Confidence            877 59999998766  667889999999999999999999999999999   999999999999999999999999985


Q ss_pred             ------CCEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCC
Q psy11524        178 ------GDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSH  248 (323)
Q Consensus       178 ------~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~  248 (323)
                            +..+++++.| .|++||++.. ....+.+|...|.+++|+|+|++|++++.|+ |++||+++++.+..  +. +
T Consensus       160 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~--~~-~  236 (319)
T 3frx_A          160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT--LS-A  236 (319)
T ss_dssp             ------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE--EE-C
T ss_pred             CCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE--ec-C
Confidence                  4479999997 9999999865 4456778999999999999999999999999 99999999998887  33 3


Q ss_pred             ccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc------------cCCCCccceeEEEEeeCCCeeEeeecCCeEE
Q psy11524        249 SHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS------------LDKPDTGSVYDLVWSSDATQIAGACANGSLL  316 (323)
Q Consensus       249 ~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~  316 (323)
                      ...+.+++|+|++    ..++.... ..+.+|++...            ....|...+.+++|+|||++|++|+.||.|+
T Consensus       237 ~~~v~~~~~sp~~----~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~  311 (319)
T 3frx_A          237 QDEVFSLAFSPNR----YWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIR  311 (319)
T ss_dssp             CSCEEEEEECSSS----SEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCcEEEEEEcCCC----CEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEE
Confidence            4689999999998    56655543 34666665432            1123456799999999999999999999999


Q ss_pred             EEEeec
Q psy11524        317 LGTIIQ  322 (323)
Q Consensus       317 ~~~l~~  322 (323)
                      +|++.+
T Consensus       312 vWd~~t  317 (319)
T 3frx_A          312 VWQVMT  317 (319)
T ss_dssp             EEEEEE
T ss_pred             EEEEee
Confidence            999865

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.6e-42  Score=289.87  Aligned_cols=275  Identities=16%  Similarity=0.220  Sum_probs=226.7

Q ss_pred             eeeeeEeecccc-eeEeeEeccCCcceeeeeeccccccccceee----------e--cCCCCCEEEEEEcCCCCeEEEEe
Q psy11524         34 VKNHLTIRRYDG-TVINYPISPYISVLHSYAASHSWPQALSLCR----------T--LNVSPPVYSAAWSPDSNKVLLTQ  100 (323)
Q Consensus        34 ~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~--~~~~~~v~~~~~sp~~~~l~~~~  100 (323)
                      +....++.+|.. .|.+++|+|+|..++    +++.|++.++|.          .  ..|...|.+++|+|+|++|++++
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~~la----s~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s   80 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGTLLA----SCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS   80 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSSCEE----EEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCCEEE----EEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE
Confidence            345567889987 999999999995554    444444444432          1  24889999999999999999998


Q ss_pred             eCCeEEEEeCCCCc----eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCC----eeeEeecCCCceeEE
Q psy11524        101 AKSLVIKPLSPNNK----ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGR----QLYSSLTHDHPISSL  172 (323)
Q Consensus       101 ~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~----~~~~~~~~~~~v~~~  172 (323)
                      .+ +.+++|+....    ...+.+|...|.+++|+|++++|++++.|++|+   +||++..    .+..+..|...|.++
T Consensus        81 ~D-~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~---iwd~~~~~~~~~~~~~~~h~~~v~~~  156 (345)
T 3fm0_A           81 FD-ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVW---VWEVDEEDEYECVSVLNSHTQDVKHV  156 (345)
T ss_dssp             TT-SCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE---EEEECTTSCEEEEEEECCCCSCEEEE
T ss_pred             CC-CcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEE---EEECCCCCCeEEEEEecCcCCCeEEE
Confidence            77 59999987653    456789999999999999999999999999999   9999532    345677899999999


Q ss_pred             EEecCCCEEEEEeCC-eEEEEeCCCC---eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCc---------
Q psy11524        173 AWAPGGDMFAVGSYN-TLRLCDKVGW---SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSS---------  238 (323)
Q Consensus       173 ~~~p~~~~l~~~~~~-~i~i~d~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~---------  238 (323)
                      +|+|++++|++++.| .|++||.+..   ....+.+|...|.+++|+|+|++|++++.|+ |++||.....         
T Consensus       157 ~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~  236 (345)
T 3fm0_A          157 VWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSG  236 (345)
T ss_dssp             EECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC-
T ss_pred             EECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeec
Confidence            999999999999996 9999998754   2346778999999999999999999999999 9999964321         


Q ss_pred             ------eeeeecCCC-CccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-------------cCCCCccceeEEE
Q psy11524        239 ------SSNVTAPLS-HSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-------------LDKPDTGSVYDLV  298 (323)
Q Consensus       239 ------~~~~~~~~~-~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~  298 (323)
                            ++..  +.+ |...|.+++|+|++    ..+++...++.+++|+....             ....|...|++++
T Consensus       237 ~~~~~~~~~~--~~~~h~~~v~~v~~~~~~----~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~  310 (345)
T 3fm0_A          237 SDPSWKCICT--LSGFHSRTIYDIAWCQLT----GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVA  310 (345)
T ss_dssp             --CEEEEEEE--ECSSCSSCEEEEEECTTT----CCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEE
T ss_pred             cCCccceeEE--ecCCCCCcEEEEEEecCC----CEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeE
Confidence                  1222  233 77899999999998    88999999999999987542             2356889999999


Q ss_pred             EeeCCC-eeEeeecCCeEEEEEeec
Q psy11524        299 WSSDAT-QIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       299 ~s~~g~-~l~s~~~dg~i~~~~l~~  322 (323)
                      |+|++. +|++|+.||+|++|++.+
T Consensus       311 ~~p~~~~~laS~s~Dg~v~~W~~~~  335 (345)
T 3fm0_A          311 WNPKEPGLLASCSDDGEVAFWKYQR  335 (345)
T ss_dssp             ECSSSTTEEEEEETTSCEEEEEECC
T ss_pred             EeCCCceEEEEcCCCCcEEEEEecC
Confidence            999984 999999999999999865

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.8e-42  Score=289.21  Aligned_cols=273  Identities=14%  Similarity=0.133  Sum_probs=234.2

Q ss_pred             eeeeEeecccceeEeeEeccCCcceeeeeeccccccccceeeec---------CCCCCEEEEEEcCCCCeEEEEeeCCeE
Q psy11524         35 KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTL---------NVSPPVYSAAWSPDSNKVLLTQAKSLV  105 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~sp~~~~l~~~~~~~~~  105 (323)
                      .....+++|.+.|.++.|+|++.    .+++++.|++.++|...         .|...|.+++|+|+|+++++++.+ +.
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~----~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d-~~  129 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKR----RIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLD-NK  129 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSS----EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTT-SE
T ss_pred             EEEEEecCCCCeEEEEEECCCCC----EEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCC-CC
Confidence            45577899999999999999994    55666666666665422         267889999999999999998877 59


Q ss_pred             EEEeCCCC--------ceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEec
Q psy11524        106 IKPLSPNN--------KATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAP  176 (323)
Q Consensus       106 v~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p  176 (323)
                      +++|+...        ....+..|...|.+++|+|++..|++++.|++|+   +||++ ++.+..+.+|...|.+++|+|
T Consensus       130 i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~---lwd~~~~~~~~~~~~h~~~v~~~~~~~  206 (354)
T 2pbi_B          130 CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCA---LWDVESGQLLQSFHGHGADVLCLDLAP  206 (354)
T ss_dssp             EEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEE---EEETTTCCEEEEEECCSSCEEEEEECC
T ss_pred             EEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEE---EEeCCCCeEEEEEcCCCCCeEEEEEEe
Confidence            99997642        1456778999999999999999999999999999   99995 677888999999999999988


Q ss_pred             --CCCEEEEEeCC-eEEEEeCCC-CeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccc
Q psy11524        177 --GGDMFAVGSYN-TLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHE  251 (323)
Q Consensus       177 --~~~~l~~~~~~-~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~  251 (323)
                        ++++|++++.| .|++||++. .....+..|...|.+++|+|++.+|++++.|+ |++||++.++.+..+....+...
T Consensus       207 ~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~  286 (354)
T 2pbi_B          207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG  286 (354)
T ss_dssp             CSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccc
Confidence              47899999996 999999874 46667788999999999999999999999999 99999999887766323334557


Q ss_pred             eEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        252 ITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       252 v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      +.+++|+|++    ..++++..++.+++|++...    ....|...|.+++|+|+|++|++|+.||+|++|+
T Consensus       287 ~~~~~~s~~g----~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          287 ASSVDFSLSG----RLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEEEECTTS----SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             eeEEEEeCCC----CEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            8999999999    89999999999999998654    4567899999999999999999999999999995

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3e-42  Score=288.71  Aligned_cols=272  Identities=18%  Similarity=0.162  Sum_probs=217.4

Q ss_pred             ecccceeEeeEeccCCcceeeeeec--ccccccccee-------------eecCCCCCEEEEEEcCCCCeEEEEeeCCeE
Q psy11524         41 RRYDGTVINYPISPYISVLHSYAAS--HSWPQALSLC-------------RTLNVSPPVYSAAWSPDSNKVLLTQAKSLV  105 (323)
Q Consensus        41 ~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------------~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~  105 (323)
                      ..|...|.++.|+|||..++.....  ..|+.....+             ..+.+...|.+++|+|++ .|++++.+ +.
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~d-g~  104 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDS-GA  104 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETT-SE
T ss_pred             ccccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECC-CE
Confidence            4577889999999999766533211  1355433222             122356789999999986 57777666 69


Q ss_pred             EEEeCCCCc--e----eEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCC
Q psy11524        106 IKPLSPNNK--A----TKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGG  178 (323)
Q Consensus       106 v~~~~~~~~--~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~  178 (323)
                      |++||....  .    ....+|.+.|.+++|+|+|++|++++.|++|+   +||++ ++.+..+.+|...|.+++|+|++
T Consensus       105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~---iwd~~~~~~~~~~~~h~~~V~~~~~~~~~  181 (344)
T 4gqb_B          105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIK---VWDLAQQVVLSSYRAHAAQVTCVAASPHK  181 (344)
T ss_dssp             EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE---EEETTTTEEEEEECCCSSCEEEEEECSSC
T ss_pred             EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEE---EEECCCCcEEEEEcCcCCceEEEEecCCC
Confidence            999997654  2    23458999999999999999999999999999   99996 67778889999999999999987


Q ss_pred             C-EEEEEeCC-eEEEEeCCCC-eeeec--CCCCccEEEEEEcC-CCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccc
Q psy11524        179 D-MFAVGSYN-TLRLCDKVGW-SHSLD--KPDTGSVYDLVWSN-DATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHE  251 (323)
Q Consensus       179 ~-~l~~~~~~-~i~i~d~~~~-~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~  251 (323)
                      . +|++++.| +|++||++.. ....+  ..+...+.+++|+| ++++|++++.|+ |++||+++++++.+  +.+|...
T Consensus       182 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~--~~~h~~~  259 (344)
T 4gqb_B          182 DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS--SAVHSQC  259 (344)
T ss_dssp             TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE--EECCSSC
T ss_pred             CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE--EcCCCCC
Confidence            5 68889886 9999998754 33333  33556799999999 466889999999 99999999999988  7899999


Q ss_pred             eEEEEEccCCCCccceEEEEeCCCCeEEEecccc---cCCCCccceeEEEEeeCCC-eeEeeecCCeEEEEEeec
Q psy11524        252 ITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---LDKPDTGSVYDLVWSSDAT-QIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       252 v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~-~l~s~~~dg~i~~~~l~~  322 (323)
                      |++++|+|++.   .+|+.++.|+.+++|+....   ....|.+.|++++|+|+++ +|++++.||+|++|++.+
T Consensus       260 v~~v~fsp~g~---~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          260 VTGLVFSPHSV---PFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             EEEEEECSSSS---CCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             EEEEEEccCCC---eEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence            99999999972   57888999999999998765   4567899999999999987 567999999999999854

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.7e-42  Score=289.51  Aligned_cols=272  Identities=17%  Similarity=0.204  Sum_probs=219.8

Q ss_pred             eecccceeEeeEeccCCcceeeeeecc--ccccccceee-------------ecCCCCCEEEEEEcCCCCeEEEEeeCCe
Q psy11524         40 IRRYDGTVINYPISPYISVLHSYAASH--SWPQALSLCR-------------TLNVSPPVYSAAWSPDSNKVLLTQAKSL  104 (323)
Q Consensus        40 ~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------------~~~~~~~v~~~~~sp~~~~l~~~~~~~~  104 (323)
                      ...|+..|.+++|+|||+.+++.....  .||....++.             ..+|...|++++|+|+++++ +++.+ +
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~d-g  115 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDS-G  115 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETT-S
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECC-C
Confidence            457999999999999997776554332  3666555442             22488899999999998655 45555 6


Q ss_pred             EEEEeCCCCc------eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecC
Q psy11524        105 VIKPLSPNNK------ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPG  177 (323)
Q Consensus       105 ~v~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~  177 (323)
                      .|++||....      .....+|...|.+++|+|++++|++++.|+.|+   +||++ ++.+..+..|...|.+++|+|+
T Consensus       116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~---iwd~~~~~~~~~~~~h~~~v~~v~~s~~  192 (357)
T 4g56_B          116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVK---VWDLSQKAVLKSYNAHSSEVNCVAACPG  192 (357)
T ss_dssp             CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEE---EEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEE---EEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence            9999998654      123457999999999999999999999999999   99996 6677788899999999999998


Q ss_pred             CC-EEEEEeCC-eEEEEeCCCC-eee--ecCCCCccEEEEEEcCC-CCEEEEEecCc-EEEEEcCCCceeeeecCCCCcc
Q psy11524        178 GD-MFAVGSYN-TLRLCDKVGW-SHS--LDKPDTGSVYDLVWSND-ATQIAGACANV-IHIFDISSSSSSNVTAPLSHSH  250 (323)
Q Consensus       178 ~~-~l~~~~~~-~i~i~d~~~~-~~~--~~~~~~~~v~~~~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~  250 (323)
                      +. ++++++.| .|++||++.. ...  ....+...+.+++|+|+ +.+|++++.|+ |++||+++++.+..  +..|..
T Consensus       193 ~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~--~~~~~~  270 (357)
T 4g56_B          193 KDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT--SAVHSQ  270 (357)
T ss_dssp             CSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE--ECCCSS
T ss_pred             CCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE--Eeccce
Confidence            75 68888886 9999998754 332  23346778999999997 56888999999 99999999998888  788999


Q ss_pred             ceEEEEEccCCCCccceEEEEeCCCCeEEEecccc---cCCCCccceeEEEEee-CCCeeEeeecCCeEEEEEee
Q psy11524        251 EITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---LDKPDTGSVYDLVWSS-DATQIAGACANGSLLLGTII  321 (323)
Q Consensus       251 ~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~-~g~~l~s~~~dg~i~~~~l~  321 (323)
                      .|++++|+|++.   ..|+.++.++.+++|++...   ....|...|++++|+| ++++|++++.||+|++|++.
T Consensus       271 ~v~~l~~sp~~~---~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          271 NITGLAYSYHSS---PFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             CEEEEEECSSSS---CCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             eEEEEEEcCCCC---CEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence            999999999872   57888899999999998765   2335889999999999 79999999999999999984

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.1e-41  Score=281.90  Aligned_cols=273  Identities=16%  Similarity=0.172  Sum_probs=223.8

Q ss_pred             eeeeeEeecccceeEeeEe-----cc-CCcceeeeeeccccccccceeee---------------c-CCCCCEEEEEEcC
Q psy11524         34 VKNHLTIRRYDGTVINYPI-----SP-YISVLHSYAASHSWPQALSLCRT---------------L-NVSPPVYSAAWSP   91 (323)
Q Consensus        34 ~~~~~~~~~~~~~v~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~v~~~~~sp   91 (323)
                      +.....+++|.+.|.++.|     +| ++    .++++++.|++.++|..               + .|...|.+++|+|
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~----~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~   86 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKENEDS----PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ   86 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTTCCC----CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS
T ss_pred             eeeeeeeccchhhhhheeeEEEeecCCCC----CEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC
Confidence            3445678999999999999     66 77    45566666665555532               2 3889999999999


Q ss_pred             CCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEee---cCC
Q psy11524         92 DSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSL---THD  166 (323)
Q Consensus        92 ~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~---~~~  166 (323)
                      ++.++++++.| +.|++||....  ...+.+|...|.+++|+|++++|++++.|++|+   +||+.+.......   .|.
T Consensus        87 ~~~~l~s~s~D-~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~---~wd~~~~~~~~~~~~~~~~  162 (343)
T 2xzm_R           87 ENCFAISSSWD-KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIK---LWNILGECKFSSAEKENHS  162 (343)
T ss_dssp             STTEEEEEETT-SEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEE---EEESSSCEEEECCTTTSCS
T ss_pred             CCCEEEEEcCC-CcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEE---EEeccCCceeeeecccCCC
Confidence            99999998877 59999998765  667889999999999999999999999999999   9999866555444   678


Q ss_pred             CceeEEEEecCC----------CEEEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEc
Q psy11524        167 HPISSLAWAPGG----------DMFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDI  234 (323)
Q Consensus       167 ~~v~~~~~~p~~----------~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~  234 (323)
                      ..|.+++|+|++          .+|++++.| .|++||.+......+..|...|.+++|+|+|++|++++.|+ |++||+
T Consensus       163 ~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~  242 (343)
T 2xzm_R          163 DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI  242 (343)
T ss_dssp             SCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred             ceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            889999999986          689999996 99999976666667778999999999999999999999999 999999


Q ss_pred             CC-CceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc------cC-----------CCCccceeE
Q psy11524        235 SS-SSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS------LD-----------KPDTGSVYD  296 (323)
Q Consensus       235 ~~-~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~------~~-----------~~~~~~v~~  296 (323)
                      .. ......   ..+...|.+++|+|++    ..++. ..++.+++|++...      ..           ..|...|.+
T Consensus       243 ~~~~~~~~~---~~~~~~v~~v~~sp~~----~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  314 (343)
T 2xzm_R          243 LNLTYPQRE---FDAGSTINQIAFNPKL----QWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTS  314 (343)
T ss_dssp             SCCSSCSEE---EECSSCEEEEEECSSS----CEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEE
T ss_pred             CCCccccee---ecCCCcEEEEEECCCC----CEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEE
Confidence            54 333333   2345679999999997    55554 45677888887543      01           256778999


Q ss_pred             EEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        297 LVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       297 ~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      ++|+|+|++|++|+.||.|++|++.+
T Consensus       315 ~~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          315 LAWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             EEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             EEECCCCCeEEEecCCceEEEEEEEc
Confidence            99999999999999999999999854

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.7e-41  Score=303.92  Aligned_cols=272  Identities=20%  Similarity=0.296  Sum_probs=238.9

Q ss_pred             eeEeecccceeEeeEeccCCcceeeeeecc---ccccccceeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCC
Q psy11524         37 HLTIRRYDGTVINYPISPYISVLHSYAASH---SWPQALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPN  112 (323)
Q Consensus        37 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~  112 (323)
                      ...+.+|...|.++.|+|++..++....++   .|+...+....+ .|...|.+++|+|+|++|++++.+ +.+++|+..
T Consensus       296 ~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-g~v~~~~~~  374 (577)
T 2ymu_A          296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDD-KTVKLWNRN  374 (577)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETT-SEEEEEETT
T ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCC-CEEEEEcCC
Confidence            356788999999999999997665544443   355443333333 488999999999999999988776 699999987


Q ss_pred             Cc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEE
Q psy11524        113 NK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLR  190 (323)
Q Consensus       113 ~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~  190 (323)
                      .. ...+..|...|.+++|+|++++|++++.|+.|+   +||.+++.+..+..|...|.+++|+|++++|++++.| .|+
T Consensus       375 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~---~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~  451 (577)
T 2ymu_A          375 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK---LWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK  451 (577)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEE---EECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEE---EEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEE
Confidence            66 667889999999999999999999999999999   9999999999999999999999999999999999997 999


Q ss_pred             EEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEE
Q psy11524        191 LCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVA  269 (323)
Q Consensus       191 i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~  269 (323)
                      +||..+.....+.+|...|.+++|+|++++|++++.|+ |++|| .+++.+..  +.+|...|++++|+|++    .+|+
T Consensus       452 ~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~--~~~h~~~v~~l~~s~dg----~~l~  524 (577)
T 2ymu_A          452 LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT--LTGHSSSVRGVAFSPDG----QTIA  524 (577)
T ss_dssp             EEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEE--EECCSSCEEEEEECTTS----SCEE
T ss_pred             EEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEE--EeCCCCCEEEEEEcCCC----CEEE
Confidence            99998888888888999999999999999999999999 99999 46777777  68899999999999999    7888


Q ss_pred             EEeCCCCeEEEecccc---cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        270 FIDKNRDLYLSMWSHS---LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       270 ~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      +++.++.+++|+....   ....|...|++++|+|||++|++++.|++|++|+
T Consensus       525 s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          525 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            9999999999986543   4567899999999999999999999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.3e-40  Score=274.78  Aligned_cols=271  Identities=16%  Similarity=0.200  Sum_probs=226.0

Q ss_pred             eeeEeecccceeEeeEeccCCcceeeeeecccccccccee--------eec-CCCCCEEEEEEcCCCCeEEEEeeCCeEE
Q psy11524         36 NHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLC--------RTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVI  106 (323)
Q Consensus        36 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v  106 (323)
                      ...++++|.+.|.+++|+|++..+    +++++|++.++|        +.+ .|..+|.+++|+|++++|++++.+ +.|
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l----~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d-~~i   79 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWV----LTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD-FRI   79 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEE----EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT-SEE
T ss_pred             eEEeecCCCCceEEEEECCCCCEE----EEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCC-CEE
Confidence            346788999999999999999544    445444444444        333 378899999999999999999877 599


Q ss_pred             EEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC--CeeeEeecCCCceeEEEEec-CCCEE
Q psy11524        107 KPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG--RQLYSSLTHDHPISSLAWAP-GGDMF  181 (323)
Q Consensus       107 ~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~--~~~~~~~~~~~~v~~~~~~p-~~~~l  181 (323)
                      ++||....  ...+.+|...|.+++|+|++++|++++.|++|+   +||++.  .....+.+|...|.+++|+| ++..|
T Consensus        80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~---lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l  156 (304)
T 2ynn_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK---LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF  156 (304)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE---EEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEE
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEE---EEECCCCcchhhhhcccCCcEEEEEECCCCCCEE
Confidence            99998765  677889999999999999999999999999999   999963  34456788999999999999 67899


Q ss_pred             EEEeCC-eEEEEeCCCC--eeeecCCCCccEEEEEEcC--CCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEE
Q psy11524        182 AVGSYN-TLRLCDKVGW--SHSLDKPDTGSVYDLVWSN--DATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQL  255 (323)
Q Consensus       182 ~~~~~~-~i~i~d~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~  255 (323)
                      ++++.| .|++||++..  .......+...+..++|+|  ++.+|++++.|+ |++||+++++++.+  +.+|...|..+
T Consensus       157 ~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~--~~~h~~~v~~~  234 (304)
T 2ynn_A          157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT--LEGHMSNVSFA  234 (304)
T ss_dssp             EEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEE--EECCSSCEEEE
T ss_pred             EEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcccee--eCCCCCCEEEE
Confidence            999997 9999998743  2334455677899999987  778999999999 99999999999888  78999999999


Q ss_pred             EEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCC--eeEeeecCCeEEEEEee
Q psy11524        256 AVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDAT--QIAGACANGSLLLGTII  321 (323)
Q Consensus       256 ~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~--~l~s~~~dg~i~~~~l~  321 (323)
                      +|+|++    ..|+.++.++.+++|+....    ....|...+.+++|+|+++  ++++|++|| +.+|++.
T Consensus       235 ~~~p~~----~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~  301 (304)
T 2ynn_A          235 VFHPTL----PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLG  301 (304)
T ss_dssp             EECSSS----SEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC
T ss_pred             EECCCC----CEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEec
Confidence            999998    78999999999999998764    4456678999999999986  467776555 5666664

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-40  Score=278.41  Aligned_cols=271  Identities=13%  Similarity=0.229  Sum_probs=214.1

Q ss_pred             eeeeEeecccceeEeeEeccCCcceeeeeeccccccccce----------eeec--C-CCCCEEEEEEcCCCCeEEEEee
Q psy11524         35 KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSL----------CRTL--N-VSPPVYSAAWSPDSNKVLLTQA  101 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~--~-~~~~v~~~~~sp~~~~l~~~~~  101 (323)
                      .....+++|.+.|.++.|+|+  .    +++++.|++.++          ...+  . |...|.+++|+|++++|++++.
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~--~----las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~   78 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQG--I----LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF   78 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETT--E----EEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET
T ss_pred             ccceeeccCCCceeeeccCCC--E----EEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC
Confidence            445678899999999999987  3    444443433333          2333  3 8899999999999999999987


Q ss_pred             CCeEEEEeCCCC---------ceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-C----CeeeEeecCCC
Q psy11524        102 KSLVIKPLSPNN---------KATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-G----RQLYSSLTHDH  167 (323)
Q Consensus       102 ~~~~v~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~----~~~~~~~~~~~  167 (323)
                      + +.|++|+...         ....+.+|...|.+++|+|++++|++++.|++|+   +||++ .    +.+..+.+|..
T Consensus        79 D-~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~---iwd~~~~~~~~~~~~~~~~h~~  154 (330)
T 2hes_X           79 D-STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVW---IWETDESGEEYECISVLQEHSQ  154 (330)
T ss_dssp             T-SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEE---EEECCTTCCCCEEEEEECCCSS
T ss_pred             C-CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEE---EEeccCCCCCeEEEEEeccCCC
Confidence            7 5999998742         1456788999999999999999999999999999   99993 2    34566788999


Q ss_pred             ceeEEEEecCCCEEEEEeCC-eEEEEeCCCC---eeeecCCCCccEEEEEEcCC--CCEEEEEecCc-EEEEEcCCC---
Q psy11524        168 PISSLAWAPGGDMFAVGSYN-TLRLCDKVGW---SHSLDKPDTGSVYDLVWSND--ATQIAGACANV-IHIFDISSS---  237 (323)
Q Consensus       168 ~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~---~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~-i~iwd~~~~---  237 (323)
                      .|.+++|+|++.+|++++.| +|++||....   .+..+.+|...|.+++|+|+  +.+|++++.|+ |++||++.+   
T Consensus       155 ~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~  234 (330)
T 2hes_X          155 DVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED  234 (330)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTT
T ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcc
Confidence            99999999999999999997 9999997643   45677889999999999998  77899999999 999998754   


Q ss_pred             -----ceeeeecCCC-CccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-------cCCCCcc-ceeEEEEee--
Q psy11524        238 -----SSSNVTAPLS-HSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-------LDKPDTG-SVYDLVWSS--  301 (323)
Q Consensus       238 -----~~~~~~~~~~-~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-------~~~~~~~-~v~~~~~s~--  301 (323)
                           .....  +.. |...|.+++|+++     +.++.+..++.+.+|+....       ....|.. .|.+++|+|  
T Consensus       235 ~~~~~~~~~~--~~~~h~~~v~~v~~s~~-----~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~  307 (330)
T 2hes_X          235 DQQEWVCEAI--LPDVHKRQVYNVAWGFN-----GLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELN  307 (330)
T ss_dssp             SCEEEEEEEE--CCSCCSSCEEEEEECTT-----SCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC---
T ss_pred             ccceeEEeee--cccccccceEEEEEcCC-----CEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCC
Confidence                 23333  444 8899999999976     57888889999999987542       2345666 899999999  


Q ss_pred             CCCeeEeeecCCeEEEEEeec
Q psy11524        302 DATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       302 ~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      ++++|++|+.||+|++|++.+
T Consensus       308 ~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          308 GKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             --CCEEEEETTSEEEEEEC--
T ss_pred             CceEEEEecCCCcEEEEEecc
Confidence            789999999999999999864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.9e-42  Score=291.51  Aligned_cols=276  Identities=18%  Similarity=0.223  Sum_probs=229.6

Q ss_pred             eeeeEeecccceeEeeEeccCCcceeeeeeccccccccceeee--------c-CCCCCEEEEEEcCCCCeEEEEeeCCeE
Q psy11524         35 KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRT--------L-NVSPPVYSAAWSPDSNKVLLTQAKSLV  105 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~v~~~~~sp~~~~l~~~~~~~~~  105 (323)
                      ....++++|.+.|.++.|+|++.    ++++++.|++.++|..        + .|...|.+++|+|+|++|++++.+ +.
T Consensus        57 ~~~~~l~gH~~~V~~~~~sp~~~----~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d-~~  131 (380)
T 3iz6_a           57 VCCRTLQGHSGKVYSLDWTPEKN----WIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLD-SA  131 (380)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSS----CEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSS-SC
T ss_pred             EEeecccccccEEEEEEEcCCCC----EEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCC-Cc
Confidence            34567899999999999999994    5556666666555542        2 388899999999999999998877 59


Q ss_pred             EEEeCCCCc---------eeEeeccCCCeEEEEECCC-CCEEEEEcCCCceEeeeEEeCC-CCeeeEe-----ecCCCce
Q psy11524        106 IKPLSPNNK---------ATKWQAHDGLILKVAWCSS-TDLILSGGEDCKYKASFVWDTD-GRQLYSS-----LTHDHPI  169 (323)
Q Consensus       106 v~~~~~~~~---------~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~-----~~~~~~v  169 (323)
                      +++|+....         ...+.+|.+.+.++.|+|+ +..|++++.|++|+   +||++ ++.+..+     .+|...|
T Consensus       132 v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~---~wd~~~~~~~~~~~~~~~~~h~~~v  208 (380)
T 3iz6_a          132 CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCV---LWDVTTGQRISIFGSEFPSGHTADV  208 (380)
T ss_dssp             CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEE---EECTTTCCEEEEECCCSSSSCCSCE
T ss_pred             EEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEE---EEEcCCCcEEEEeecccCCCCccCe
Confidence            999987532         3457889999999999997 45799999999999   99996 5555555     5688899


Q ss_pred             eEEEEec-CCCEEEEEeCC-eEEEEeCC--CCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeec
Q psy11524        170 SSLAWAP-GGDMFAVGSYN-TLRLCDKV--GWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTA  244 (323)
Q Consensus       170 ~~~~~~p-~~~~l~~~~~~-~i~i~d~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~  244 (323)
                      .+++|+| ++++|++|+.| .|++||++  ......+.+|...|.+++|+|++++|++++.|+ |++||+++++.+..+.
T Consensus       209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~  288 (380)
T 3iz6_a          209 LSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN  288 (380)
T ss_dssp             EEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred             EEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence            9999987 78999999997 99999986  345667788999999999999999999999999 9999999998877632


Q ss_pred             CCC-----CccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc--------cCCCCccceeEEEEeeCCCeeEeeec
Q psy11524        245 PLS-----HSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS--------LDKPDTGSVYDLVWSSDATQIAGACA  311 (323)
Q Consensus       245 ~~~-----~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~s~~g~~l~s~~~  311 (323)
                      ...     +...+.+++|+|+|    ..++.+..++.+.+|+....        ....|...|.+++|+|+|++|++|+.
T Consensus       289 ~~~~~~~~~~~~v~~~~~s~~g----~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~  364 (380)
T 3iz6_a          289 REPDRNDNELPIVTSVAFSISG----RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW  364 (380)
T ss_dssp             CCCSSSCCSSCSCSEEEECSSS----SEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECT
T ss_pred             ccccccccccCceEEEEECCCC----CEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeC
Confidence            211     22358999999999    88999999999999987543        23568999999999999999999999


Q ss_pred             CCeEEEEEeec
Q psy11524        312 NGSLLLGTIIQ  322 (323)
Q Consensus       312 dg~i~~~~l~~  322 (323)
                      ||+|++|++..
T Consensus       365 D~~i~iW~~~~  375 (380)
T 3iz6_a          365 DKNLKIWAFSG  375 (380)
T ss_dssp             TSCEEEEECCS
T ss_pred             CCCEEEEecCC
Confidence            99999999854

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.2e-39  Score=276.83  Aligned_cols=272  Identities=17%  Similarity=0.210  Sum_probs=218.2

Q ss_pred             ecccceeEeeEeccCCcceeeeeecc--ccc-cccceeeecC-------------------CCCCEEEEEEcCCCCeEEE
Q psy11524         41 RRYDGTVINYPISPYISVLHSYAASH--SWP-QALSLCRTLN-------------------VSPPVYSAAWSPDSNKVLL   98 (323)
Q Consensus        41 ~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~-------------------~~~~v~~~~~sp~~~~l~~   98 (323)
                      .+|.+.|.++.|+|+|+.++......  .|+ .+.++...+.                   +...|.+++|+|+|++|++
T Consensus        61 ~~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             EECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             cCCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            36999999999999997665432111  233 2222222232                   1224999999999999999


Q ss_pred             EeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEec
Q psy11524         99 TQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAP  176 (323)
Q Consensus        99 ~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p  176 (323)
                      ++.+ +.|++||....  ...+.+|...|.+++|+|++++|++++.|++|+   +||++.........+...+.+++|+|
T Consensus       141 ~~~d-~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~---iwd~~~~~~~~~~~~~~~v~~~~~~~  216 (393)
T 1erj_A          141 GAED-RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR---IWDLRTGQCSLTLSIEDGVTTVAVSP  216 (393)
T ss_dssp             EETT-SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE---EEETTTTEEEEEEECSSCEEEEEECS
T ss_pred             EcCC-CeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEE---EEECCCCeeEEEEEcCCCcEEEEEEC
Confidence            8877 59999998765  567889999999999999999999999999999   99997554444444667899999999


Q ss_pred             -CCCEEEEEeCC-eEEEEeCCCC-eeeec-------CCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCc-------
Q psy11524        177 -GGDMFAVGSYN-TLRLCDKVGW-SHSLD-------KPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSS-------  238 (323)
Q Consensus       177 -~~~~l~~~~~~-~i~i~d~~~~-~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~-------  238 (323)
                       ++++|++++.| .|++||++.. ....+       .+|...|.+++|+|+|++|++++.|+ |++||+++..       
T Consensus       217 ~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~  296 (393)
T 1erj_A          217 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT  296 (393)
T ss_dssp             TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred             CCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccC
Confidence             89999999996 9999998754 33332       56889999999999999999999999 9999987643       


Q ss_pred             -----eeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEee------CC
Q psy11524        239 -----SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSS------DA  303 (323)
Q Consensus       239 -----~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~------~g  303 (323)
                           +...  +.+|...|.+++|+|++    ..|+.++.++.+++|+....    ....|...|.+++|++      ++
T Consensus       297 ~~~~~~~~~--~~~h~~~v~~~~~~~~~----~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~  370 (393)
T 1erj_A          297 PNSGTCEVT--YIGHKDFVLSVATTQND----EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY  370 (393)
T ss_dssp             ----CEEEE--EECCSSCEEEEEECGGG----CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTC
T ss_pred             CCCCcceEE--EecccCcEEEEEECCCC----CEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCC
Confidence                 2333  56788999999999998    78999999999999998765    4567899999999986      68


Q ss_pred             CeeEeeecCCeEEEEEeec
Q psy11524        304 TQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       304 ~~l~s~~~dg~i~~~~l~~  322 (323)
                      ++|++|+.||+|++|++..
T Consensus       371 ~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          371 NVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EEEEEEETTSEEEEEEEEE
T ss_pred             CEEEEECCCCcEEECcccc
Confidence            8999999999999999854

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1e-39  Score=292.40  Aligned_cols=273  Identities=21%  Similarity=0.303  Sum_probs=239.5

Q ss_pred             eeEeecccceeEeeEeccCCcceeeeeecc---ccccccceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCC
Q psy11524         37 HLTIRRYDGTVINYPISPYISVLHSYAASH---SWPQALSLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPN  112 (323)
Q Consensus        37 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~  112 (323)
                      ...+.+|...|.++.|+|++..++....++   .|+...+..+.+. |...|.+++|+|+++.+++++.+ +.+++|+..
T Consensus       255 ~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d-~~i~~w~~~  333 (577)
T 2ymu_A          255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD-KTVKLWNRN  333 (577)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETT-SCEEEEETT
T ss_pred             EEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCC-CeEEEEeCC
Confidence            456788999999999999997665544433   3665555555554 89999999999999999998777 599999987


Q ss_pred             Cc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEE
Q psy11524        113 NK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLR  190 (323)
Q Consensus       113 ~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~  190 (323)
                      .. ...+..|...+.+++|+|++++|++++.|+.++   +||.+++.+..+..|...|.+++|+|++++|++++.| .|+
T Consensus       334 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~---~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~  410 (577)
T 2ymu_A          334 GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK---LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK  410 (577)
T ss_dssp             SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE---EEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred             CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEE---EEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEE
Confidence            76 667889999999999999999999999999999   9999999999999999999999999999999999996 999


Q ss_pred             EEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEE
Q psy11524        191 LCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVA  269 (323)
Q Consensus       191 i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~  269 (323)
                      +||..+.....+..|...|.+++|+|++++|++++.|+ |++||. +++.+..  +.+|...|.+++|+|++    ..|+
T Consensus       411 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~--~~~~~~~v~~~~~spd~----~~la  483 (577)
T 2ymu_A          411 LWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQT--LTGHSSSVRGVAFSPDG----QTIA  483 (577)
T ss_dssp             EECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEE--EECCSSCEEEEEECTTS----CEEE
T ss_pred             EEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEE--EcCCCCCEEEEEEcCCC----CEEE
Confidence            99988887788888999999999999999999999999 999995 5666666  67899999999999999    7888


Q ss_pred             EEeCCCCeEEEecccc---cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        270 FIDKNRDLYLSMWSHS---LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       270 ~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      +.+.++.+++|+....   ....|...|++++|+|+|++|++++.||.|++|+.
T Consensus       484 s~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~  537 (577)
T 2ymu_A          484 SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR  537 (577)
T ss_dssp             EEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred             EEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence            8888888888886543   44568899999999999999999999999999985

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.3e-39  Score=291.73  Aligned_cols=274  Identities=18%  Similarity=0.224  Sum_probs=231.1

Q ss_pred             eeeEeecccceeEeeEeccCCcceeeeeeccccccccceeee----------c-CCCCCEEEEEEcCCCCeEEEEeeCC-
Q psy11524         36 NHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRT----------L-NVSPPVYSAAWSPDSNKVLLTQAKS-  103 (323)
Q Consensus        36 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~v~~~~~sp~~~~l~~~~~~~-  103 (323)
                      ....+.+|...|.+++|+|+|+    ++++++.|++.++|..          + .|..+|.+++|+|+|++|++++.++ 
T Consensus        51 ~~~~~~~h~~~v~~~~~spdg~----~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~  126 (611)
T 1nr0_A           51 DTEIYTEHSHQTTVAKTSPSGY----YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE  126 (611)
T ss_dssp             CCEEECCCSSCEEEEEECTTSS----EEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred             cCeEecCCCCceEEEEECCCCc----EEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCC
Confidence            3456889999999999999995    5555555555554432          2 3789999999999999999887653 


Q ss_pred             --eEEEEeCCCCceeEeeccCCCeEEEEECCCCC-EEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCC
Q psy11524        104 --LVIKPLSPNNKATKWQAHDGLILKVAWCSSTD-LILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGD  179 (323)
Q Consensus       104 --~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~  179 (323)
                        +.|++|+.......+.+|...|.+++|+|++. .|++++.|++|+   +||.. .+....+.+|...|.+++|+|+|+
T Consensus       127 ~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~---lwd~~~~~~~~~l~~H~~~V~~v~fspdg~  203 (611)
T 1nr0_A          127 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA---IFEGPPFKFKSTFGEHTKFVHSVRYNPDGS  203 (611)
T ss_dssp             CSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE---EEETTTBEEEEEECCCSSCEEEEEECTTSS
T ss_pred             ceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEE---EEECCCCeEeeeeccccCceEEEEECCCCC
Confidence              68999998777778899999999999999986 699999999999   99985 566678889999999999999999


Q ss_pred             EEEEEeCC-eEEEEeCCC-CeeeecC-------CCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeec-----
Q psy11524        180 MFAVGSYN-TLRLCDKVG-WSHSLDK-------PDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTA-----  244 (323)
Q Consensus       180 ~l~~~~~~-~i~i~d~~~-~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~-----  244 (323)
                      +|++++.| +|++||+.. .....+.       +|.+.|.+++|+|+|++|++++.|+ |++||+++++.+.++.     
T Consensus       204 ~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~  283 (611)
T 1nr0_A          204 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI  283 (611)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG
T ss_pred             EEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCc
Confidence            99999997 999999764 4444442       6999999999999999999999999 9999998876544321     


Q ss_pred             ------------------------------------CCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc---
Q psy11524        245 ------------------------------------PLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---  285 (323)
Q Consensus       245 ------------------------------------~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---  285 (323)
                                                          +.+|...|.+++|+|++    ..|++.+.++.+++|++...   
T Consensus       284 ~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg----~~l~s~s~D~~v~~Wd~~~~~~~  359 (611)
T 1nr0_A          284 EDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG----KTLFSADAEGHINSWDISTGISN  359 (611)
T ss_dssp             GGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTTCCEE
T ss_pred             cceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC----CEEEEEeCCCcEEEEECCCCcee
Confidence                                                34788899999999999    89999999999999998764   


Q ss_pred             --cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        286 --LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       286 --~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                        ....|...|.+++|++++ .|++++.|+.+++|++.
T Consensus       360 ~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~  396 (611)
T 1nr0_A          360 RVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAG  396 (611)
T ss_dssp             ECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSS
T ss_pred             eecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecC
Confidence              225688999999999776 78899999999999853

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.6e-39  Score=292.85  Aligned_cols=271  Identities=15%  Similarity=0.180  Sum_probs=219.2

Q ss_pred             eeEeecccceeEeeEeccCCcceeeeeeccccccccceee--------ec--------CCCCCEEEEEEcCCCCeEEEEe
Q psy11524         37 HLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCR--------TL--------NVSPPVYSAAWSPDSNKVLLTQ  100 (323)
Q Consensus        37 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--------~~~~~v~~~~~sp~~~~l~~~~  100 (323)
                      ...+.+|...|.+++|+|+++.    +++++.|++.++|.        .+        .|...|.+++|+|+|++|++++
T Consensus       183 ~~~l~~H~~~V~~v~fspdg~~----las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s  258 (611)
T 1nr0_A          183 KSTFGEHTKFVHSVRYNPDGSL----FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS  258 (611)
T ss_dssp             EEEECCCSSCEEEEEECTTSSE----EEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred             eeeeccccCceEEEEECCCCCE----EEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEe
Confidence            4568899999999999999954    45555455444442        33        5899999999999999999998


Q ss_pred             eCCeEEEEeCCCCc--e-------------------------------------------eEeeccCCCeEEEEECCCCC
Q psy11524        101 AKSLVIKPLSPNNK--A-------------------------------------------TKWQAHDGLILKVAWCSSTD  135 (323)
Q Consensus       101 ~~~~~v~~~~~~~~--~-------------------------------------------~~~~~~~~~v~~~~~~~~~~  135 (323)
                      .| +.|++||....  .                                           ..+.+|...|.+++|+|+|+
T Consensus       259 ~D-~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~  337 (611)
T 1nr0_A          259 AD-KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK  337 (611)
T ss_dssp             TT-SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred             CC-CeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC
Confidence            77 59999997643  1                                           12357889999999999999


Q ss_pred             EEEEEcCCCceEeeeEEeCCCCee-eEe----------------------------------------------------
Q psy11524        136 LILSGGEDCKYKASFVWDTDGRQL-YSS----------------------------------------------------  162 (323)
Q Consensus       136 ~l~~~~~d~~i~~i~v~d~~~~~~-~~~----------------------------------------------------  162 (323)
                      +|++++.|++|+   +||+..... ..+                                                    
T Consensus       338 ~l~s~s~D~~v~---~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~  414 (611)
T 1nr0_A          338 TLFSADAEGHIN---SWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQP  414 (611)
T ss_dssp             EEEEEETTSCEE---EEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCE
T ss_pred             EEEEEeCCCcEE---EEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCC
Confidence            999999999999   999853211 110                                                    


Q ss_pred             ------------------------------ecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeee--ecCCCCccE
Q psy11524        163 ------------------------------LTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHS--LDKPDTGSV  209 (323)
Q Consensus       163 ------------------------------~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~--~~~~~~~~v  209 (323)
                                                    ..+...+.+++|+|||++|++++.| +|++||+.+....  ....|...|
T Consensus       415 ~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v  494 (611)
T 1nr0_A          415 LGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI  494 (611)
T ss_dssp             EEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCE
T ss_pred             cEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCce
Confidence                                          0022346789999999999999997 9999998765321  225689999


Q ss_pred             EEEEEcCCCCEEEEEecCc-EEEEEcCC-CceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc--
Q psy11524        210 YDLVWSNDATQIAGACANV-IHIFDISS-SSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS--  285 (323)
Q Consensus       210 ~~~~~~~~~~~l~~~~~d~-i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~--  285 (323)
                      .+++|+|+|++|++++.|+ |++||+.+ ++.........|...|.+++|+|++    ..|++++.|+.+++|++...  
T Consensus       495 ~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg----~~lasgs~D~~v~lW~~~~~~~  570 (611)
T 1nr0_A          495 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN----VRLATGSLDNSVIVWNMNKPSD  570 (611)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTCTTS
T ss_pred             EEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCC----CEEEEEECCCcEEEEECCCccc
Confidence            9999999999999999999 99999987 5554431134499999999999999    89999999999999998753  


Q ss_pred             ----cCCCC-ccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        286 ----LDKPD-TGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       286 ----~~~~~-~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                          ....| ...|.+++|+|+++ |++++.|++|++|++
T Consensus       571 ~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          571 HPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV  609 (611)
T ss_dssp             CCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred             ccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence                34567 78999999999998 999999999999997

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1e-39  Score=269.45  Aligned_cols=240  Identities=14%  Similarity=0.160  Sum_probs=208.7

Q ss_pred             eeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeE
Q psy11524         75 CRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFV  151 (323)
Q Consensus        75 ~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v  151 (323)
                      .+++ .|.+.|++++|+|++++|++++.+ +.|++|+....  ...+..|..+|.+++|+|++++|++++.|++|+   +
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~d-g~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~---v   81 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYS-GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR---V   81 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETT-SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE---E
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCC-CcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE---E
Confidence            3445 389999999999999999999877 69999998765  667888999999999999999999999999999   9


Q ss_pred             EeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC--eeeecCCCCccEEEEEEcC-CCCEEEEEec
Q psy11524        152 WDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW--SHSLDKPDTGSVYDLVWSN-DATQIAGACA  226 (323)
Q Consensus       152 ~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~  226 (323)
                      ||++ ++.+..+.+|...|.+++|+|++++|++++.| +|++||++..  ....+.+|...|.+++|+| ++.+|++++.
T Consensus        82 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~  161 (304)
T 2ynn_A           82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (304)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred             EECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence            9995 77888899999999999999999999999997 9999998743  3456778999999999999 6789999999


Q ss_pred             Cc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEee
Q psy11524        227 NV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSS  301 (323)
Q Consensus       227 d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~  301 (323)
                      |+ |++||++++.....+ ...+...+..+.|+|...  ...++.++.++.+++|++...    ....|...|.+++|+|
T Consensus       162 D~~v~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~--~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p  238 (304)
T 2ynn_A          162 DRTVKVWSLGQSTPNFTL-TTGQERGVNYVDYYPLPD--KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP  238 (304)
T ss_dssp             TSEEEEEETTCSSCSEEE-ECCCTTCEEEEEECCSTT--CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred             CCeEEEEECCCCCcccee-ccCCcCcEEEEEEEEcCC--CCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC
Confidence            99 999999887766552 345667899999987321  168888889999999988765    4567899999999999


Q ss_pred             CCCeeEeeecCCeEEEEEee
Q psy11524        302 DATQIAGACANGSLLLGTII  321 (323)
Q Consensus       302 ~g~~l~s~~~dg~i~~~~l~  321 (323)
                      ++++|++|+.||+|++|++.
T Consensus       239 ~~~~l~s~s~Dg~i~iWd~~  258 (304)
T 2ynn_A          239 TLPIIISGSEDGTLKIWNSS  258 (304)
T ss_dssp             SSSEEEEEETTSCEEEEETT
T ss_pred             CCCEEEEEcCCCeEEEEECC
Confidence            99999999999999999974

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=8.3e-39  Score=264.95  Aligned_cols=276  Identities=19%  Similarity=0.252  Sum_probs=225.7

Q ss_pred             eeeeEeecccceeEeeEeccCCcceeeeeecc---cccc-ccceeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEe
Q psy11524         35 KNHLTIRRYDGTVINYPISPYISVLHSYAASH---SWPQ-ALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPL  109 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~  109 (323)
                      ....++.+|...|.++.|+|+++.++....++   .|+. +.+....+ .|...|.+++|+|++++|++++.+ +.|++|
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-~~i~vw   92 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD-KTLKIW   92 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT-SEEEEE
T ss_pred             eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCC-CEEEEE
Confidence            44567889999999999999996554443333   2331 22223333 388999999999999999998777 599999


Q ss_pred             CCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeC
Q psy11524        110 SPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY  186 (323)
Q Consensus       110 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  186 (323)
                      +....  ...+..|...|.+++|+|++++|++++.|+.|+   +||++ ++.+..+..|..+|.+++|+|++++|++++.
T Consensus        93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~---iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
T 4ery_A           93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR---IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  169 (312)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE---EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEE---EEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence            98765  667889999999999999999999999999999   99996 6777888889999999999999999999999


Q ss_pred             C-eEEEEeCCCC-eee-ecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceE--EEEEc-c
Q psy11524        187 N-TLRLCDKVGW-SHS-LDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEIT--QLAVN-Q  259 (323)
Q Consensus       187 ~-~i~i~d~~~~-~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~--~~~~~-p  259 (323)
                      | .|++||++.. ... ....+...+..++|+|++++|++++.|+ |++||+++++.+..  +.+|.....  ...++ +
T Consensus       170 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~  247 (312)
T 4ery_A          170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--YTGHKNEKYCIFANFSVT  247 (312)
T ss_dssp             TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE--ECSSCCSSSCCCEEEECS
T ss_pred             CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE--EEecCCceEEEEEEEEeC
Confidence            6 9999998754 333 3345667899999999999999999999 99999999998887  555544322  23444 4


Q ss_pred             CCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeee--cCCeEEEEEe
Q psy11524        260 TGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGAC--ANGSLLLGTI  320 (323)
Q Consensus       260 ~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~--~dg~i~~~~l  320 (323)
                      ++    ..+++++.++.+++|++...    ....|...|.+++|+|+++.|++++  .|+.|++|+.
T Consensus       248 ~~----~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          248 GG----KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             SS----CEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred             CC----cEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence            55    67888888888999988765    4567899999999999999999987  6999999985

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2e-38  Score=265.46  Aligned_cols=280  Identities=15%  Similarity=0.189  Sum_probs=220.7

Q ss_pred             eeeeeeEeecccceeEeeEeccCCcceeeeeeccccccccceeee-------------c-CCCCCEEEEEEcCCCCeEEE
Q psy11524         33 FVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRT-------------L-NVSPPVYSAAWSPDSNKVLL   98 (323)
Q Consensus        33 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~-~~~~~v~~~~~sp~~~~l~~   98 (323)
                      .+....+++||.+.|.+++|+|++.   .++++++.|+++++|..             + .|...|.+++|+|+|++|++
T Consensus        27 ~~~l~~tL~GH~~~V~~v~~sp~~~---~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s  103 (340)
T 4aow_A           27 QMTLRGTLKGHNGWVTQIATTPQFP---DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS  103 (340)
T ss_dssp             EEEEEEEECCCSSCEEEEEECTTCT---TEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             ceEEEEEECCccCCEEEEEEeCCCC---CEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence            3344567899999999999999842   45666666666666542             2 37899999999999999999


Q ss_pred             EeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCee--eEeecCCCceeEEEE
Q psy11524         99 TQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQL--YSSLTHDHPISSLAW  174 (323)
Q Consensus        99 ~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~--~~~~~~~~~v~~~~~  174 (323)
                      ++.+ +.+++|+....  ......+...+..+.+++++++|++++.|+.++   +||+.....  .....|...+..++|
T Consensus       104 ~~~d-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~---~~d~~~~~~~~~~~~~~~~~v~~~~~  179 (340)
T 4aow_A          104 GSWD-GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK---LWNTLGVCKYTVQDESHSEWVSCVRF  179 (340)
T ss_dssp             EETT-SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE---EECTTSCEEEEECSSSCSSCEEEEEE
T ss_pred             Eccc-ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEE---EEEeCCCceEEEEeccccCcccceEE
Confidence            9877 59999998776  445667788899999999999999999999999   999965443  344568889999999


Q ss_pred             ecCC--CEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCc
Q psy11524        175 APGG--DMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHS  249 (323)
Q Consensus       175 ~p~~--~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~  249 (323)
                      ++++  .++++++.| .|++||++.. ....+.+|...|.+++|+|++++|++++.|+ |++||+++++.+..  +. +.
T Consensus       180 ~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~--~~-~~  256 (340)
T 4aow_A          180 SPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT--LD-GG  256 (340)
T ss_dssp             CSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE--EE-CS
T ss_pred             ccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee--ec-CC
Confidence            9864  467788886 9999998855 5557778999999999999999999999999 99999999998887  33 44


Q ss_pred             cceEEEEEccCCC----CccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        250 HEITQLAVNQTGS----LQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       250 ~~v~~~~~~p~g~----~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      ..+..+.|+|++.    +.|+.|.+|+.++...+..+...    ....|...|++++|+|+|++|++|+.||.|++|++.
T Consensus       257 ~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          257 DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT  336 (340)
T ss_dssp             SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence            6899999999863    33334444444443333333221    234578899999999999999999999999999986


Q ss_pred             c
Q psy11524        322 Q  322 (323)
Q Consensus       322 ~  322 (323)
                      .
T Consensus       337 t  337 (340)
T 4aow_A          337 I  337 (340)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.2e-39  Score=276.51  Aligned_cols=237  Identities=16%  Similarity=0.182  Sum_probs=212.5

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-  155 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-  155 (323)
                      .|..+|++++|+|++++|++++.+ +.|++||....  ...+.+|...|.+++|+|++++|++|+.|++|+   +||+. 
T Consensus       106 gh~~~V~~~~~~p~~~~l~s~s~D-g~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~---iwd~~~  181 (410)
T 1vyh_C          106 GHRSPVTRVIFHPVFSVMVSASED-ATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK---LWDFQG  181 (410)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEESS-SCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC---EEETTS
T ss_pred             ccCCcEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEE---EEeCCC
Confidence            599999999999999999999877 59999998765  678899999999999999999999999999999   99996 


Q ss_pred             CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCC-CCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEE
Q psy11524        156 GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKV-GWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIF  232 (323)
Q Consensus       156 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iw  232 (323)
                      .+.+..+.+|...|.+++|+|++++|++++.| .|++||++ +.....+.+|...+.++.++|+|++|++++.|+ |++|
T Consensus       182 ~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vw  261 (410)
T 1vyh_C          182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW  261 (410)
T ss_dssp             SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEE
Confidence            56778888999999999999999999999997 99999987 456667788999999999999999999999999 9999


Q ss_pred             EcCCCceeeeecCCCCccceEEEEEccCCC----------------CccceEEEEeCCCCeEEEecccc----cCCCCcc
Q psy11524        233 DISSSSSSNVTAPLSHSHEITQLAVNQTGS----------------LQERHVAFIDKNRDLYLSMWSHS----LDKPDTG  292 (323)
Q Consensus       233 d~~~~~~~~~~~~~~~~~~v~~~~~~p~g~----------------~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~  292 (323)
                      |+++++....  +..|...|.+++|+|++.                .....+++++.++.+++|++...    ....|..
T Consensus       262 d~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~  339 (410)
T 1vyh_C          262 VVATKECKAE--LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN  339 (410)
T ss_dssp             ETTTCCEEEE--ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             ECCCCceeeE--ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence            9999998887  788999999999999742                01257888899999999998765    4456889


Q ss_pred             ceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        293 SVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       293 ~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      .|.+++|+|+|++|++|+.||.|++|++.
T Consensus       340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~  368 (410)
T 1vyh_C          340 WVRGVLFHSGGKFILSCADDKTLRVWDYK  368 (410)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            99999999999999999999999999874

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.3e-39  Score=266.93  Aligned_cols=239  Identities=15%  Similarity=0.218  Sum_probs=208.9

Q ss_pred             eeeec-CCCCCEEEEEEcCC----CCeEEEEeeCCeEEEEeCCCCc----eeEeeccCCCeEEEEECCCCCEEEEEcCCC
Q psy11524         74 LCRTL-NVSPPVYSAAWSPD----SNKVLLTQAKSLVIKPLSPNNK----ATKWQAHDGLILKVAWCSSTDLILSGGEDC  144 (323)
Q Consensus        74 ~~~~~-~~~~~v~~~~~sp~----~~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  144 (323)
                      +.+.+ .|.+.|.+++|+|+    +++|++|+.| +.|++|+....    ...+.+|...|.+++|+|++.++++++.|+
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D-~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~  102 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLD-DLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA  102 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETT-SCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCC-CCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence            33444 59999999999985    5689888777 59999997654    335789999999999999999999999999


Q ss_pred             ceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCC-CeeeecCCCCccEEEEEEcCCCCEE
Q psy11524        145 KYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQI  221 (323)
Q Consensus       145 ~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l  221 (323)
                      +|+   +||+. ++.+..+..+...+.+++|+|++++|++++.+ .+++||++. .....+..+...+.+++|+|+|++|
T Consensus       103 ~i~---lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  179 (321)
T 3ow8_A          103 HIR---LWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL  179 (321)
T ss_dssp             EEE---EEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEE
T ss_pred             cEE---EEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEE
Confidence            999   99995 66777888888899999999999999999996 999999874 4555666788899999999999999


Q ss_pred             EEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeE
Q psy11524        222 AGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYD  296 (323)
Q Consensus       222 ~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~  296 (323)
                      ++++.|+ |++||+++++.+.+  +.+|..+|.+++|+|++    ..|++++.++.+++|++...    ....|...|.+
T Consensus       180 asg~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~spd~----~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~  253 (321)
T 3ow8_A          180 ASGAIDGIINIFDIATGKLLHT--LEGHAMPIRSLTFSPDS----QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLN  253 (321)
T ss_dssp             EEEETTSCEEEEETTTTEEEEE--ECCCSSCCCEEEECTTS----CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             EEEcCCCeEEEEECCCCcEEEE--EcccCCceeEEEEcCCC----CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEE
Confidence            9999999 99999999999888  78899999999999998    88999999999999998764    45678899999


Q ss_pred             EEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        297 LVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       297 ~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      ++|+|++++|++++.|++|++|++.+
T Consensus       254 ~~~sp~~~~l~s~s~D~~v~iwd~~~  279 (321)
T 3ow8_A          254 VAFCPDDTHFVSSSSDKSVKVWDVGT  279 (321)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCC
Confidence            99999999999999999999999753

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.9e-38  Score=287.93  Aligned_cols=272  Identities=17%  Similarity=0.158  Sum_probs=220.3

Q ss_pred             eeeeEeecccceeEeeEeccCCcceeeeeeccccccccceee-------------ec-CCCCCEEEEEEcCCCCeEEEEe
Q psy11524         35 KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCR-------------TL-NVSPPVYSAAWSPDSNKVLLTQ  100 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-~~~~~v~~~~~sp~~~~l~~~~  100 (323)
                      .....+++|.+.|.+++++|++.   .++++++.|+++++|.             .+ .|...|.+++|+|++++|++++
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~---~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs  449 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNA---DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGS  449 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCC---SEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             chhhhcccCCceeEEEEecCCCC---CEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEe
Confidence            44457899999999999999753   4566666666666553             22 4899999999999999999998


Q ss_pred             eCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEe----ecCCCceeEEEE
Q psy11524        101 AKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSS----LTHDHPISSLAW  174 (323)
Q Consensus       101 ~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~----~~~~~~v~~~~~  174 (323)
                      .+ +.|++||....  ...+.+|...|.+++|+|++++|++++.|++|+   +||..+.....+    .+|...|.+++|
T Consensus       450 ~D-g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~---iwd~~~~~~~~~~~~~~~h~~~v~~~~~  525 (694)
T 3dm0_A          450 WD-GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK---LWNTLGECKYTISEGGEGHRDWVSCVRF  525 (694)
T ss_dssp             TT-SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE---EECTTSCEEEEECSSTTSCSSCEEEEEE
T ss_pred             CC-CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEE---EEECCCCcceeeccCCCCCCCcEEEEEE
Confidence            77 59999998765  667889999999999999999999999999999   999976655544    357788999999


Q ss_pred             ecCC--CEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCc
Q psy11524        175 APGG--DMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHS  249 (323)
Q Consensus       175 ~p~~--~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~  249 (323)
                      +|++  ..+++++.| .|++||+++. ....+.+|.+.|.+++|+|+|++|++++.|+ |++||+++++.+..  + .+.
T Consensus       526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~--~-~~~  602 (694)
T 3dm0_A          526 SPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS--L-EAN  602 (694)
T ss_dssp             CSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEEC--C-BCS
T ss_pred             eCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE--e-cCC
Confidence            9986  579999986 9999998854 5567788999999999999999999999999 99999999998876  3 345


Q ss_pred             cceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCC-------------------CCccceeEEEEeeCCCee
Q psy11524        250 HEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDK-------------------PDTGSVYDLVWSSDATQI  306 (323)
Q Consensus       250 ~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~-------------------~~~~~v~~~~~s~~g~~l  306 (323)
                      ..+.+++|+|++    ..+... .++.+++|++...    ...                   .+...+.+++|||+|++|
T Consensus       603 ~~v~~~~~sp~~----~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l  677 (694)
T 3dm0_A          603 SVIHALCFSPNR----YWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTL  677 (694)
T ss_dssp             SCEEEEEECSSS----SEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEE
T ss_pred             CcEEEEEEcCCC----cEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEE
Confidence            689999999997    444333 3444666666543    000                   011247899999999999


Q ss_pred             EeeecCCeEEEEEee
Q psy11524        307 AGACANGSLLLGTII  321 (323)
Q Consensus       307 ~s~~~dg~i~~~~l~  321 (323)
                      ++|+.||.|++|++.
T Consensus       678 ~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          678 FSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEETTSEEEEEEC-
T ss_pred             EEEcCCCeEEEEecc
Confidence            999999999999985

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.4e-37  Score=259.80  Aligned_cols=271  Identities=13%  Similarity=0.113  Sum_probs=227.0

Q ss_pred             EeecccceeEeeEeccCCcceeeeeecc---ccccc-cc---eee---ecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEE
Q psy11524         39 TIRRYDGTVINYPISPYISVLHSYAASH---SWPQA-LS---LCR---TLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKP  108 (323)
Q Consensus        39 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~-~~---~~~---~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~  108 (323)
                      ...+|...|.++.|+|++..++... ++   .|+.. .+   ...   ...|...|.+++|+|++++|++++.+ +.|++
T Consensus        46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~  123 (337)
T 1gxr_A           46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA-STLSI  123 (337)
T ss_dssp             EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS-SEEEE
T ss_pred             eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC-CcEEE
Confidence            3458999999999999997665443 33   24321 11   111   12588999999999999999998776 59999


Q ss_pred             eCCCCc----eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEE
Q psy11524        109 LSPNNK----ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAV  183 (323)
Q Consensus       109 ~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~  183 (323)
                      |+....    ...+..|...|.+++|+|+++++++++.|+.|+   +||++ ++....+..|...+.+++|+|+++++++
T Consensus       124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~---~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  200 (337)
T 1gxr_A          124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA---VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT  200 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEE---EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEE---EEeCCCCceeeeeecccCceEEEEECCCCCEEEE
Confidence            998764    345678999999999999999999999999999   99996 5666778889999999999999999999


Q ss_pred             EeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCC
Q psy11524        184 GSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTG  261 (323)
Q Consensus       184 ~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g  261 (323)
                      ++.+ .|++||++.........+...+.+++|+|++++|++++.++ |++||+++++...   +..|...+.+++|+|++
T Consensus       201 ~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~  277 (337)
T 1gxr_A          201 GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ---LHLHESCVLSLKFAYCG  277 (337)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE---ECCCSSCEEEEEECTTS
T ss_pred             EecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE---EcCCccceeEEEECCCC
Confidence            9986 99999998665544445788899999999999999999999 9999999887654   57889999999999998


Q ss_pred             CCccceEEEEeCCCCeEEEecccc---cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        262 SLQERHVAFIDKNRDLYLSMWSHS---LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       262 ~~~d~~l~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                          ..+++.+.++.+.+|++...   ....|...+.+++|+|++++|++++.||.|++|++.
T Consensus       278 ----~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          278 ----KWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             ----SEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             ----CEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence                78888888999999998765   222357899999999999999999999999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.8e-37  Score=260.02  Aligned_cols=236  Identities=14%  Similarity=0.149  Sum_probs=206.0

Q ss_pred             eeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeE
Q psy11524         75 CRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFV  151 (323)
Q Consensus        75 ~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v  151 (323)
                      .+.+ .|...|++++|+|++++|++++.+ +.|++|+....  ...+..|...|.+++|+|++++|++++.|+.++   +
T Consensus        48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~D-g~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~---i  123 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGTDSRLLLSASQD-GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS---I  123 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETT-TEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEE---E
T ss_pred             heeecCCCCceEEEEECCCCCEEEEEeCC-CcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEE---E
Confidence            3444 499999999999999999999877 59999997655  667788999999999999999999999999999   9


Q ss_pred             EeCCC-----CeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEE
Q psy11524        152 WDTDG-----RQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGA  224 (323)
Q Consensus       152 ~d~~~-----~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~  224 (323)
                      |++..     .....+.+|...+.++.|+|++. +++++.| .|++||++.. ....+.+|...|.+++|+|++++++++
T Consensus       124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg  202 (340)
T 1got_B          124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence            99953     24456788999999999999875 7777776 9999998754 556778899999999999999999999


Q ss_pred             ecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----c--CCCCccceeEE
Q psy11524        225 CANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----L--DKPDTGSVYDL  297 (323)
Q Consensus       225 ~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~--~~~~~~~v~~~  297 (323)
                      +.|+ |++||+++++.+..  +.+|...|.+++|+|++    ..+++++.++.+++|++...    .  ...+...|.++
T Consensus       203 ~~d~~v~~wd~~~~~~~~~--~~~h~~~v~~v~~~p~~----~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~  276 (340)
T 1got_B          203 ACDASAKLWDVREGMCRQT--FTGHESDINAICFFPNG----NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV  276 (340)
T ss_dssp             ETTSCEEEEETTTCSEEEE--ECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred             eCCCcEEEEECCCCeeEEE--EcCCcCCEEEEEEcCCC----CEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE
Confidence            9999 99999999998888  78899999999999998    89999999999999998764    1  12234579999


Q ss_pred             EEeeCCCeeEeeecCCeEEEEEee
Q psy11524        298 VWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       298 ~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +|+|+|++|++|+.||.|++|++.
T Consensus       277 ~~s~~g~~l~~g~~d~~i~vwd~~  300 (340)
T 1got_B          277 SFSKSGRLLLAGYDDFNCNVWDAL  300 (340)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETT
T ss_pred             EECCCCCEEEEECCCCeEEEEEcc
Confidence            999999999999999999999964

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=8.8e-38  Score=256.95  Aligned_cols=236  Identities=16%  Similarity=0.231  Sum_probs=200.9

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc----eeEeeccCCCeEEEEECCC--CCEEEEEcCCCceEeeeEE
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK----ATKWQAHDGLILKVAWCSS--TDLILSGGEDCKYKASFVW  152 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~i~v~  152 (323)
                      .|...|++++|+|+|++||+++.| +.|++|+....    ...+.+|.+.|.+++|+|+  +++|++++.|++|+   +|
T Consensus         7 ~h~~~V~~~~~s~~g~~las~s~D-~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~---iW   82 (297)
T 2pm7_B            7 AHNEMIHDAVMDYYGKRMATCSSD-KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM---IW   82 (297)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETT-SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE---EE
T ss_pred             CCcCceEEEEECCCCCEEEEEeCC-CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE---EE
Confidence            589999999999999999999877 59999997532    5678999999999999864  89999999999999   99


Q ss_pred             eCCCC---eeeEeecCCCceeEEEEecC--CCEEEEEeCC-eEEEEeCCCC---eeeecCCCCccEEEEEEcCC------
Q psy11524        153 DTDGR---QLYSSLTHDHPISSLAWAPG--GDMFAVGSYN-TLRLCDKVGW---SHSLDKPDTGSVYDLVWSND------  217 (323)
Q Consensus       153 d~~~~---~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~~-~i~i~d~~~~---~~~~~~~~~~~v~~~~~~~~------  217 (323)
                      |++..   .+..+..|...|.+++|+|+  +.+|++++.| .|++||++..   ....+.+|...|.+++|+|+      
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            99643   45667789999999999997  8899999997 9999998743   23456679999999999997      


Q ss_pred             -------CCEEEEEecCc-EEEEEcCCCc----eeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc
Q psy11524        218 -------ATQIAGACANV-IHIFDISSSS----SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS  285 (323)
Q Consensus       218 -------~~~l~~~~~d~-i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~  285 (323)
                             +++|++++.|+ |++||+++++    ....  +.+|...|.+++|+|++. ....++.++.|+.+++|++...
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~--l~~H~~~V~~v~~sp~~~-~~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST--LEGHSDWVRDVAWSPTVL-LRSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEE--ECCCSSCEEEEEECCCCS-SSEEEEEEETTSCEEEEEESST
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEE--ecCCCCceEEEEECCCCC-CceEEEEEECCCcEEEEEeCCC
Confidence                   57999999999 9999998776    4444  688999999999999830 0168889999999999987652


Q ss_pred             -------cC--CCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        286 -------LD--KPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       286 -------~~--~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                             ..  ..|...|.+++|+|+|++|++++.||.|++|+..
T Consensus       240 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             CCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence                   12  4567899999999999999999999999999874

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.9e-37  Score=260.36  Aligned_cols=241  Identities=17%  Similarity=0.297  Sum_probs=205.0

Q ss_pred             ceeeecC-CCC-CEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCce----e-EeeccCCCeEEEEECCCCCEEEEEcCCCc
Q psy11524         73 SLCRTLN-VSP-PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKA----T-KWQAHDGLILKVAWCSSTDLILSGGEDCK  145 (323)
Q Consensus        73 ~~~~~~~-~~~-~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~----~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  145 (323)
                      .+.+.+. |.. .|.+++|+|+|++||+++.+ +.|++|+.....    . ...+|...|.+++|+|++++|++++.|++
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D-~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~   84 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGD-RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT   84 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETT-SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCC-CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence            3445553 766 99999999999999999877 599999987651    1 23579999999999999999999999999


Q ss_pred             eEeeeEEeCCC---CeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC----eeeecCCCCccEEEEEEcCC
Q psy11524        146 YKASFVWDTDG---RQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW----SHSLDKPDTGSVYDLVWSND  217 (323)
Q Consensus       146 i~~i~v~d~~~---~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~----~~~~~~~~~~~v~~~~~~~~  217 (323)
                      ++   +|+++.   +.+..+.+|...|.+++|+|++++|++++.| .|++||++..    ....+..|...|.+++|+|+
T Consensus        85 v~---iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~  161 (345)
T 3fm0_A           85 TC---IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS  161 (345)
T ss_dssp             EE---EEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS
T ss_pred             EE---EEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC
Confidence            99   999864   3466788899999999999999999999997 9999998743    24466789999999999999


Q ss_pred             CCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----------
Q psy11524        218 ATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----------  285 (323)
Q Consensus       218 ~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----------  285 (323)
                      +++|++++.|+ |++||.++++......+.+|...|.+++|+|++    ..|++++.++.+++|+....           
T Consensus       162 ~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g----~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~  237 (345)
T 3fm0_A          162 QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSG----QRLASCSDDRTVRIWRQYLPGNEQGVACSGS  237 (345)
T ss_dssp             SSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred             CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCC----CEEEEEeCCCeEEEeccccCCCCccceeecc
Confidence            99999999999 999999887644322278999999999999999    89999999999999986321           


Q ss_pred             ---------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        286 ---------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       286 ---------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                               ....|...|.+++|+|++..|++++.|+.|++|++.
T Consensus       238 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~  282 (345)
T 3fm0_A          238 DPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQED  282 (345)
T ss_dssp             -CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEEC
T ss_pred             CCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeC
Confidence                     112377889999999999999999999999999874

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-37  Score=259.44  Aligned_cols=276  Identities=12%  Similarity=0.135  Sum_probs=228.1

Q ss_pred             eeeeEeecccceeEeeEeccCCcceeeeeecc---ccc-cccceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEe
Q psy11524         35 KNHLTIRRYDGTVINYPISPYISVLHSYAASH---SWP-QALSLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPL  109 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~  109 (323)
                      .....+.+|.+.|.++.|+|+++.++....++   .|+ .+.+....+. |...|.+++|+|++++|++++.+ +.|++|
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-g~i~iw  101 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSAD-YSIKLW  101 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT-TEEEEE
T ss_pred             cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCC-CeEEEE
Confidence            44467899999999999999997666554444   354 3444445554 89999999999999999998777 599999


Q ss_pred             CCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCC-----CceEeeeEEeCCC------------CeeeEeecCCC--c
Q psy11524        110 SPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGED-----CKYKASFVWDTDG------------RQLYSSLTHDH--P  168 (323)
Q Consensus       110 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~i~v~d~~~------------~~~~~~~~~~~--~  168 (323)
                      +....  ...+. +...+.+++|+|+++++++++.+     +.|.   +||+..            .....+..+..  .
T Consensus       102 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~---~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (369)
T 3zwl_B          102 DVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSIN---IYEIERDSATHELTKVSEEPIHKIITHEGLDA  177 (369)
T ss_dssp             ETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEE---EEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred             ECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEE---EEEecCCccceeecccccceeeeccCCcCccc
Confidence            98765  33444 88999999999999999999998     9999   999842            13344455555  8


Q ss_pred             eeEEEEecCCCEEEEEeCC-eEEEEeCCC--CeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeec
Q psy11524        169 ISSLAWAPGGDMFAVGSYN-TLRLCDKVG--WSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTA  244 (323)
Q Consensus       169 v~~~~~~p~~~~l~~~~~~-~i~i~d~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~  244 (323)
                      +.+++|+|++++|++++.+ .|++||++.  .....+..|...|.+++|+|++++|++++.|+ |++||+++++.+..+ 
T Consensus       178 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-  256 (369)
T 3zwl_B          178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY-  256 (369)
T ss_dssp             EEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-
T ss_pred             eeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee-
Confidence            9999999999999999996 999999885  35556777899999999999999999999999 999999999988873 


Q ss_pred             CCCCccceEEEEEccCCCCccceEEEEeCCC--------------CeEEEecccc----cCCCCccceeEEEEeeCCCee
Q psy11524        245 PLSHSHEITQLAVNQTGSLQERHVAFIDKNR--------------DLYLSMWSHS----LDKPDTGSVYDLVWSSDATQI  306 (323)
Q Consensus       245 ~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~--------------~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l  306 (323)
                       . +...+..++|+|++    ..+++...++              .+.+|+....    ....|...|.+++|+|++++|
T Consensus       257 -~-~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  330 (369)
T 3zwl_B          257 -E-TDCPLNTAVITPLK----EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSY  330 (369)
T ss_dssp             -E-CSSCEEEEEECSSS----SEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             -c-CCCCceeEEecCCC----ceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEE
Confidence             3 67889999999998    7777777766              5777777654    345578999999999999999


Q ss_pred             EeeecCCeEEEEEeec
Q psy11524        307 AGACANGSLLLGTIIQ  322 (323)
Q Consensus       307 ~s~~~dg~i~~~~l~~  322 (323)
                      ++++.||.|++|++..
T Consensus       331 ~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          331 ASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             EEEETTSEEEEEEECH
T ss_pred             EEEcCCCeEEEEECcc
Confidence            9999999999999853

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.6e-37  Score=263.10  Aligned_cols=271  Identities=13%  Similarity=0.127  Sum_probs=223.9

Q ss_pred             eecccceeEeeEeccCCcceeeeeecc---ccccccc---eeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCC
Q psy11524         40 IRRYDGTVINYPISPYISVLHSYAASH---SWPQALS---LCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPN  112 (323)
Q Consensus        40 ~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~  112 (323)
                      +..|.++|.++.|+|++..++....++   .|+....   ....+ .|...|.+++|+|++++|++++.+ +.|++|+..
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-g~i~vwd~~   82 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-RNAYVWTLK   82 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-SCEEEEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC-CeEEEEECC
Confidence            456899999999999997665543433   3553222   44444 489999999999999999998776 599999986


Q ss_pred             Cc----eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCe----eeEe-ecCCCceeEEEEecCCCEEEE
Q psy11524        113 NK----ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQ----LYSS-LTHDHPISSLAWAPGGDMFAV  183 (323)
Q Consensus       113 ~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~----~~~~-~~~~~~v~~~~~~p~~~~l~~  183 (323)
                      ..    ...+..|...|.+++|+|++++|++++.|+.|+   +||++...    ...+ ..|...|.+++|+|++++|++
T Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~---i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  159 (372)
T 1k8k_C           83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS---ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA  159 (372)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEE---EEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred             CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEE---EEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence            65    233467899999999999999999999999999   99996332    2333 567889999999999999999


Q ss_pred             EeCC-eEEEEeCC-------------------CCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeee
Q psy11524        184 GSYN-TLRLCDKV-------------------GWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNV  242 (323)
Q Consensus       184 ~~~~-~i~i~d~~-------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~  242 (323)
                      ++.+ .|++||++                   +.....+..|...+.+++|+|++++|++++.|+ |++||+++++.+..
T Consensus       160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  239 (372)
T 1k8k_C          160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT  239 (372)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE
T ss_pred             EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEE
Confidence            9986 99999963                   345556668899999999999999999999999 99999999998888


Q ss_pred             ecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccc--------------------------------------
Q psy11524        243 TAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH--------------------------------------  284 (323)
Q Consensus       243 ~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~--------------------------------------  284 (323)
                        +..|..++.+++|+|++    ..++.+ .++.+.+|++..                                      
T Consensus       240 --~~~~~~~v~~~~~~~~~----~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
T 1k8k_C          240 --LASETLPLLAVTFITES----SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE  312 (372)
T ss_dssp             --EECSSCCEEEEEEEETT----EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---
T ss_pred             --EccCCCCeEEEEEecCC----CEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccc
Confidence              67888899999999998    667666 889999999876                                      


Q ss_pred             ------c-cCCCCccceeEEEEe-eCC---CeeEeeecCCeEEEEEee
Q psy11524        285 ------S-LDKPDTGSVYDLVWS-SDA---TQIAGACANGSLLLGTII  321 (323)
Q Consensus       285 ------~-~~~~~~~~v~~~~~s-~~g---~~l~s~~~dg~i~~~~l~  321 (323)
                            . +...|...|.+++|+ ++|   ++|++++.||.|++|++.
T Consensus       313 ~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~  360 (372)
T 1k8k_C          313 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR  360 (372)
T ss_dssp             ------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred             cCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence                  2 224789999999977 566   899999999999999974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6.2e-37  Score=255.88  Aligned_cols=268  Identities=13%  Similarity=0.074  Sum_probs=226.6

Q ss_pred             ccceeEeeEeccCCcceeeeeecc---cc--ccccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc---
Q psy11524         43 YDGTVINYPISPYISVLHSYAASH---SW--PQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK---  114 (323)
Q Consensus        43 ~~~~v~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~---  114 (323)
                      +.+.|.+++|+|||+.++.....+   .|  ....+....+.|...|++++|+|++++|++++ + +.|++|+....   
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-d-g~i~iw~~~~~~~~   85 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-K-GCVKVWDISHPGNK   85 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-B-SEEEEEETTSTTCC
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-C-CeEEEEECCCCCce
Confidence            567899999999997765443332   12  23344556668999999999999999999887 5 69999998653   


Q ss_pred             --eeEee--ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCC---eeeEeecCCCceeEEEEecCCCEEEEEeCC
Q psy11524        115 --ATKWQ--AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGR---QLYSSLTHDHPISSLAWAPGGDMFAVGSYN  187 (323)
Q Consensus       115 --~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~---~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~  187 (323)
                        ...+.  .|...|.+++|+|++++|++++.|+.|+   +||++..   ....+..+...+.+++|+|+++++++++.+
T Consensus        86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~---~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  162 (337)
T 1gxr_A           86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS---IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD  162 (337)
T ss_dssp             SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE---EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEE---EEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC
Confidence              23333  7899999999999999999999999999   9999643   456677888999999999999999999996


Q ss_pred             -eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCc
Q psy11524        188 -TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQ  264 (323)
Q Consensus       188 -~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~  264 (323)
                       .|++||+++. ....+..|...+.+++|+|++++|++++.|+ |++||+++++.+..   ..+...+.+++|+|++   
T Consensus       163 g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~---~~~~~~v~~~~~s~~~---  236 (337)
T 1gxr_A          163 GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ---HDFTSQIFSLGYCPTG---  236 (337)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE---EECSSCEEEEEECTTS---
T ss_pred             CcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee---ecCCCceEEEEECCCC---
Confidence             9999998754 4556777999999999999999999999999 99999999988876   3467789999999998   


Q ss_pred             cceEEEEeCCCCeEEEecccc---cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        265 ERHVAFIDKNRDLYLSMWSHS---LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       265 d~~l~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                       ..++++..++.+.+|++...   ....|...|.+++|+|++++|++++.||.|++|++..
T Consensus       237 -~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~  296 (337)
T 1gxr_A          237 -EWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY  296 (337)
T ss_dssp             -SEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             -CEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCC
Confidence             89999999999999998765   3456789999999999999999999999999999743

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.1e-37  Score=263.74  Aligned_cols=278  Identities=13%  Similarity=0.155  Sum_probs=212.2

Q ss_pred             eeeeeEeecccceeEeeEeccCC-cceeeeeecc---ccccc-cceeeec---CCCCCEEEEEEcC-CCCeEEEEeeCCe
Q psy11524         34 VKNHLTIRRYDGTVINYPISPYI-SVLHSYAASH---SWPQA-LSLCRTL---NVSPPVYSAAWSP-DSNKVLLTQAKSL  104 (323)
Q Consensus        34 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~---~~~~~-~~~~~~~---~~~~~v~~~~~sp-~~~~l~~~~~~~~  104 (323)
                      ......+.+|.+.|.++.|+|++ ..++....++   .|+.. .+....+   .|...|.+++|+| ++++|++++.+ +
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-~  141 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR-G  141 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT-T
T ss_pred             cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC-C
Confidence            34456788999999999999998 6555554443   25422 2222222   4899999999999 67888888776 6


Q ss_pred             EEEEeCCCCc-eeEeec---cCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCC-
Q psy11524        105 VIKPLSPNNK-ATKWQA---HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGD-  179 (323)
Q Consensus       105 ~v~~~~~~~~-~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~-  179 (323)
                      .|++|+..+. ...+..   |...|.+++|+|++++|++++.|+.|+   +||++++.+..+..|...|.+++|+|+++ 
T Consensus       142 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~---i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~  218 (383)
T 3ei3_B          142 ATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLL---LLGLDGHEIFKEKLHKAKVTHAEFNPRCDW  218 (383)
T ss_dssp             EEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEE---EEETTSCEEEEEECSSSCEEEEEECSSCTT
T ss_pred             EEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEE---EEECCCCEEEEeccCCCcEEEEEECCCCCC
Confidence            9999998876 444443   447899999999999999999999999   99999999999999999999999999998 


Q ss_pred             EEEEEeCC-eEEEEeCCC----CeeeecCCCCccEEEEEEcC-CCCEEEEEecCc-EEEEEcCCCceeeeecC-----CC
Q psy11524        180 MFAVGSYN-TLRLCDKVG----WSHSLDKPDTGSVYDLVWSN-DATQIAGACANV-IHIFDISSSSSSNVTAP-----LS  247 (323)
Q Consensus       180 ~l~~~~~~-~i~i~d~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~-----~~  247 (323)
                      ++++++.| .|++||++.    .......+|...+.+++|+| ++++|++++.|+ |++||+++++....+..     ..
T Consensus       219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  298 (383)
T 3ei3_B          219 LMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ  298 (383)
T ss_dssp             EEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT
T ss_pred             EEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccc
Confidence            89999986 999999874    33333336899999999999 999999999999 99999998876555211     11


Q ss_pred             Cccc----------eEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCC--CCccceeEEEEeeCCCeeEeeec
Q psy11524        248 HSHE----------ITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDK--PDTGSVYDLVWSSDATQIAGACA  311 (323)
Q Consensus       248 ~~~~----------v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~--~~~~~v~~~~~s~~g~~l~s~~~  311 (323)
                      +...          +..++|+|+++    .  +++.++.+.+|++...    ...  .|...+..++|+|+|++|++++ 
T Consensus       299 ~~~~~~~~~~p~~~~~~~~~s~dg~----~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-  371 (383)
T 3ei3_B          299 HLTPIKATWHPMYDLIVAGRYPDDQ----L--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-  371 (383)
T ss_dssp             TSCCCCCEECSSSSEEEEECBCCTT----T--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-
T ss_pred             cccceEEeccCCCCceEEEecCCcc----c--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-
Confidence            2223          33355555542    2  3345666666666543    122  2467788889999999999997 


Q ss_pred             CCeEEEEEeec
Q psy11524        312 NGSLLLGTIIQ  322 (323)
Q Consensus       312 dg~i~~~~l~~  322 (323)
                      ||.|++|++.+
T Consensus       372 d~~i~iw~~~~  382 (383)
T 3ei3_B          372 GFNILIWNRED  382 (383)
T ss_dssp             TTEEEEEECC-
T ss_pred             CCcEEEEecCC
Confidence            99999999864

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.4e-37  Score=261.88  Aligned_cols=274  Identities=13%  Similarity=0.173  Sum_probs=221.8

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeecccc---cccccee----------eecCCCCCEEEEEEcCC---CCeEEEEee
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASHSW---PQALSLC----------RTLNVSPPVYSAAWSPD---SNKVLLTQA  101 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----------~~~~~~~~v~~~~~sp~---~~~l~~~~~  101 (323)
                      ..+.+|.+.|.++.|+|++..+   ++.+++   |+..++|          ..+.|...|.+++|+|+   +++|++++.
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l---~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~   88 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKF---VTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF   88 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEE---EEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET
T ss_pred             hhccCCCCceEEEEEcCCCceE---EEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC
Confidence            3457899999999999998543   333333   3333333          23358899999999999   689998877


Q ss_pred             CCeEEEEeCCCCc---eeEeeccCCCeEEEEE------CCCCCEEEEEcCCCceEeeeEEeCCC-C-eeeEeecCCC---
Q psy11524        102 KSLVIKPLSPNNK---ATKWQAHDGLILKVAW------CSSTDLILSGGEDCKYKASFVWDTDG-R-QLYSSLTHDH---  167 (323)
Q Consensus       102 ~~~~v~~~~~~~~---~~~~~~~~~~v~~~~~------~~~~~~l~~~~~d~~i~~i~v~d~~~-~-~~~~~~~~~~---  167 (323)
                      + +.|++|+....   ...+..|...|.++.|      +|++++|++++.|+.|+   +||++. + ....+..+..   
T Consensus        89 d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~---vwd~~~~~~~~~~~~~~~~~~~  164 (357)
T 3i2n_A           89 G-GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK---VWDPRQKDDPVANMEPVQGENK  164 (357)
T ss_dssp             T-SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE---EECTTSCSSCSEEECCCTTSCC
T ss_pred             C-CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE---EEeCCCCCCcceeccccCCCCC
Confidence            6 69999998754   5678899999999954      78899999999999999   999963 3 5666655444   


Q ss_pred             -ceeEEE----EecCCCEEEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcC---CCCEEEEEecCc-EEEEEcCCC
Q psy11524        168 -PISSLA----WAPGGDMFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSN---DATQIAGACANV-IHIFDISSS  237 (323)
Q Consensus       168 -~v~~~~----~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~-i~iwd~~~~  237 (323)
                       .+.+++    |+|+++++++++.+ .|++||+++........|...+.+++|+|   ++++|++++.|+ |++||++++
T Consensus       165 ~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  244 (357)
T 3i2n_A          165 RDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ  244 (357)
T ss_dssp             CCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred             CceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence             788888    67899999999996 99999998776666667889999999999   999999999999 999999887


Q ss_pred             ceeeeec---CCCCccceEEEEEccCCCCccc-eEEEEeCCCCeEEEecccc-----------------------cCCCC
Q psy11524        238 SSSNVTA---PLSHSHEITQLAVNQTGSLQER-HVAFIDKNRDLYLSMWSHS-----------------------LDKPD  290 (323)
Q Consensus       238 ~~~~~~~---~~~~~~~v~~~~~~p~g~~~d~-~l~~~~~~~~~~~~~~~~~-----------------------~~~~~  290 (323)
                      +....+.   +..|...|.+++|+|++    . .+++++.++.+.+|++...                       ....|
T Consensus       245 ~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  320 (357)
T 3i2n_A          245 HPTKGFASVSEKAHKSTVWQVRHLPQN----RELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS  320 (357)
T ss_dssp             ETTTEEEEEEEECCSSCEEEEEEETTE----EEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC
T ss_pred             CcccceeeeccCCCcCCEEEEEECCCC----CcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC
Confidence            7655421   23789999999999998    5 7899999999999998742                       23457


Q ss_pred             ccceeEEEEeeCCCeeE-eeecCCeEEEEEeec
Q psy11524        291 TGSVYDLVWSSDATQIA-GACANGSLLLGTIIQ  322 (323)
Q Consensus       291 ~~~v~~~~~s~~g~~l~-s~~~dg~i~~~~l~~  322 (323)
                      ...|.+++|+|+|++|+ +++.||.|++|++.+
T Consensus       321 ~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          321 TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence            88999999999999998 899999999999854

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.6e-36  Score=251.86  Aligned_cols=238  Identities=17%  Similarity=0.192  Sum_probs=206.1

Q ss_pred             cceeeec-CCCCCEEEEEEcCCC-CeEEEEeeCCeEEEEeCCCCc-------eeEeeccCCCeEEEEECCCCCEEEEEcC
Q psy11524         72 LSLCRTL-NVSPPVYSAAWSPDS-NKVLLTQAKSLVIKPLSPNNK-------ATKWQAHDGLILKVAWCSSTDLILSGGE  142 (323)
Q Consensus        72 ~~~~~~~-~~~~~v~~~~~sp~~-~~l~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~  142 (323)
                      ..+..++ .|.+.|++++|+|++ ++|++++.| +.|++|+....       ...+.+|...|.+++|+|++++|++++.
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D-~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~   85 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRD-KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW   85 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETT-SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCC-ccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence            3444555 499999999999976 788888777 69999987532       4568899999999999999999999999


Q ss_pred             CCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCC---
Q psy11524        143 DCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSND---  217 (323)
Q Consensus       143 d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~---  217 (323)
                      |++|+   +||+. ++.+..+.+|...|.+++|+|++.+|++++.| .|++||+++.....+.+|...+.++.|+|.   
T Consensus        86 D~~v~---~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~  162 (319)
T 3frx_A           86 DKTLR---LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA  162 (319)
T ss_dssp             TSEEE---EEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC---
T ss_pred             CCEEE---EEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCC
Confidence            99999   99995 66778889999999999999999999999997 999999998888888899999999999995   


Q ss_pred             ---CCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCC
Q psy11524        218 ---ATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKP  289 (323)
Q Consensus       218 ---~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~  289 (323)
                         +..|++++.|+ |++||+++++....  +.+|...|.+++|+|++    ..|++++.++.+++|++...    ....
T Consensus       163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~sp~g----~~l~s~~~dg~i~iwd~~~~~~~~~~~~  236 (319)
T 3frx_A          163 DDDSVTIISAGNDKMVKAWNLNQFQIEAD--FIGHNSNINTLTASPDG----TLIASAGKDGEIMLWNLAAKKAMYTLSA  236 (319)
T ss_dssp             ---CCEEEEEETTSCEEEEETTTTEEEEE--ECCCCSCEEEEEECTTS----SEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             CCCccEEEEEeCCCEEEEEECCcchhhee--ecCCCCcEEEEEEcCCC----CEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence               44899999999 99999999988877  78999999999999999    78888888888999988764    2222


Q ss_pred             CccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        290 DTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       290 ~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                       ...|.+++|+|++.+|++++.+ .+++|++.
T Consensus       237 -~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~  266 (319)
T 3frx_A          237 -QDEVFSLAFSPNRYWLAAATAT-GIKVFSLD  266 (319)
T ss_dssp             -CSCEEEEEECSSSSEEEEEETT-EEEEEEET
T ss_pred             -CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeC
Confidence             5689999999999999888755 58999863

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9.5e-38  Score=265.26  Aligned_cols=270  Identities=14%  Similarity=0.094  Sum_probs=207.3

Q ss_pred             EeecccceeEeeEeccCCcceeeeeecc---cccccc---ceeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCC
Q psy11524         39 TIRRYDGTVINYPISPYISVLHSYAASH---SWPQAL---SLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSP  111 (323)
Q Consensus        39 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~  111 (323)
                      ....+.++|.++.|+|++..++....++   .|+...   +....+ .|...|.+++|+|++++|++++.+ +.|++|+.
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-~~v~vwd~   84 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD-RNAYVYEK   84 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT-SSEEEC--
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC-CeEEEEEc
Confidence            3455678999999999996444332322   244221   233334 389999999999999999999877 59999998


Q ss_pred             CCc-----eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCC----eeeEeec-CCCceeEEEEecCCCEE
Q psy11524        112 NNK-----ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGR----QLYSSLT-HDHPISSLAWAPGGDMF  181 (323)
Q Consensus       112 ~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~----~~~~~~~-~~~~v~~~~~~p~~~~l  181 (323)
                      ...     ...+..|...|.+++|+|++++|++++.|+.|+   +||++..    ....+.. |...|.+++|+|++++|
T Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~---iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  161 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVIS---VCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL  161 (377)
T ss_dssp             ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEE---ECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred             CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEE---EEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence            753     455678999999999999999999999999999   9999644    3566776 89999999999999999


Q ss_pred             EEEeCC-eEEEEeCC-------------------CCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCce-
Q psy11524        182 AVGSYN-TLRLCDKV-------------------GWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSS-  239 (323)
Q Consensus       182 ~~~~~~-~i~i~d~~-------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~-  239 (323)
                      ++++.| .|++||++                   +.....+ .|...|.+++|+|++++|++++.|+ |++||+++++. 
T Consensus       162 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~  240 (377)
T 3dwl_C          162 AAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP  240 (377)
T ss_dssp             EEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC
T ss_pred             EEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc
Confidence            999996 99999984                   1223334 7899999999999999999999999 99999999887 


Q ss_pred             ---eeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-------------------------------
Q psy11524        240 ---SNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-------------------------------  285 (323)
Q Consensus       240 ---~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-------------------------------  285 (323)
                         +..  +..|...|.+++|+|++    ..|+.++. +.+.+|.....                               
T Consensus       241 ~~~~~~--~~~~~~~v~~~~~s~~~----~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (377)
T 3dwl_C          241 PRALIT--VKLSQLPLRSLLWANES----AIVAAGYN-YSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEG  313 (377)
T ss_dssp             EEECCC--EECSSSCEEEEEEEETT----EEEEEESS-SSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC--
T ss_pred             ceeeEe--ecCCCCceEEEEEcCCC----CEEEEEcC-CcEEEEEeCCCceEEEeeeccccccccccccccccccccccc
Confidence               555  67889999999999998    66666543 34445554310                               


Q ss_pred             -------------------------cCCCCccceeEEEEeeCCC----eeEeeecCCeEEEEEe
Q psy11524        286 -------------------------LDKPDTGSVYDLVWSSDAT----QIAGACANGSLLLGTI  320 (323)
Q Consensus       286 -------------------------~~~~~~~~v~~~~~s~~g~----~l~s~~~dg~i~~~~l  320 (323)
                                               ....|...|+++++.+...    .|+|++.||.|++|++
T Consensus       314 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          314 PVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             -----------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                                     1122889999999776543    5999999999999985

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.5e-36  Score=253.37  Aligned_cols=233  Identities=12%  Similarity=0.076  Sum_probs=204.8

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG  156 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~  156 (323)
                      .|...|++++|+|++++|++++.| +.|++||....  ...+..|...|.+++|+|+|.++++++.|+.++   +|++..
T Consensus        62 gH~~~V~~~~~s~d~~~l~s~s~D-g~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~---v~~~~~  137 (354)
T 2pbi_B           62 GHGNKVLCMDWCKDKRRIVSSSQD-GKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCS---VYPLTF  137 (354)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETT-SEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEE---EEECCC
T ss_pred             CCCCeEEEEEECCCCCEEEEEeCC-CeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEE---EEEEec
Confidence            499999999999999999999877 69999997654  566778889999999999999999999999999   999842


Q ss_pred             -------CeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCC-CeeeecCCCCccEEEEEEcC--CCCEEEEEe
Q psy11524        157 -------RQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVG-WSHSLDKPDTGSVYDLVWSN--DATQIAGAC  225 (323)
Q Consensus       157 -------~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~  225 (323)
                             .....+..|...|.+++|+|++..|++++.| +|++||++. ..+..+.+|...|.+++|+|  +|++|++++
T Consensus       138 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs  217 (354)
T 2pbi_B          138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGG  217 (354)
T ss_dssp             CTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEE
T ss_pred             cccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEe
Confidence                   2345677899999999999999999999997 999999874 46667788999999999988  578999999


Q ss_pred             cCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCC--CCccceeEEE
Q psy11524        226 ANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDK--PDTGSVYDLV  298 (323)
Q Consensus       226 ~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~--~~~~~v~~~~  298 (323)
                      .|+ |++||+++++++..  +..|...|.+++|+|++    ..+++++.++.+++|++...    ...  .+...+.+++
T Consensus       218 ~Dg~v~~wd~~~~~~~~~--~~~h~~~v~~v~~~p~~----~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~  291 (354)
T 2pbi_B          218 CDKKAMVWDMRSGQCVQA--FETHESDVNSVRYYPSG----DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVD  291 (354)
T ss_dssp             TTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred             CCCeEEEEECCCCcEEEE--ecCCCCCeEEEEEeCCC----CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEE
Confidence            999 99999999999888  78899999999999998    89999999999999998653    111  2235789999


Q ss_pred             EeeCCCeeEeeecCCeEEEEEee
Q psy11524        299 WSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       299 ~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      |+|+|++|++++.|+.|++|++.
T Consensus       292 ~s~~g~~l~~g~~d~~i~vwd~~  314 (354)
T 2pbi_B          292 FSLSGRLLFAGYNDYTINVWDVL  314 (354)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETT
T ss_pred             EeCCCCEEEEEECCCcEEEEECC
Confidence            99999999999999999999974

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=6.8e-37  Score=258.49  Aligned_cols=272  Identities=13%  Similarity=0.144  Sum_probs=218.1

Q ss_pred             eEeecccceeEeeEeccC---Ccc-eeeeeecc---ccccc-cceeeecC------CCCCEEEEEEcCC----CCeEEEE
Q psy11524         38 LTIRRYDGTVINYPISPY---ISV-LHSYAASH---SWPQA-LSLCRTLN------VSPPVYSAAWSPD----SNKVLLT   99 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~---~~~-~~~~~~~~---~~~~~-~~~~~~~~------~~~~v~~~~~sp~----~~~l~~~   99 (323)
                      ....+|.+.|.+++|+|+   +.. +.....++   .|+.. .+..+.+.      |...|++++|+|+    +++|+++
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            445699999999999985   321 22122222   35522 33323332      6789999999999    6688888


Q ss_pred             eeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECC-CCCEEEEEcCCCceEeeeEEeCC-CCeeeEe---ecCCCceeEE
Q psy11524        100 QAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCS-STDLILSGGEDCKYKASFVWDTD-GRQLYSS---LTHDHPISSL  172 (323)
Q Consensus       100 ~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~---~~~~~~v~~~  172 (323)
                      +.+ +.|++|+....  ...+..|...|.+++|+| ++++|++++.||.|+   +||++ ++....+   ..|...|.++
T Consensus        92 ~~d-g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~---iwd~~~~~~~~~~~~~~~~~~~v~~~  167 (366)
T 3k26_A           92 GSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR---LWNIQTDTLVAIFGGVEGHRDEVLSA  167 (366)
T ss_dssp             ETT-CEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEE---EEETTTTEEEEEECSTTSCSSCEEEE
T ss_pred             cCC-CEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEE---EEEeecCeEEEEecccccccCceeEE
Confidence            766 69999998755  667788999999999999 899999999999999   99996 4555555   5789999999


Q ss_pred             EEecCCCEEEEEeCC-eEEEEeCCCCee-----------------------------eecCCCCccEEEEEEcCCCCEEE
Q psy11524        173 AWAPGGDMFAVGSYN-TLRLCDKVGWSH-----------------------------SLDKPDTGSVYDLVWSNDATQIA  222 (323)
Q Consensus       173 ~~~p~~~~l~~~~~~-~i~i~d~~~~~~-----------------------------~~~~~~~~~v~~~~~~~~~~~l~  222 (323)
                      +|+|++++|++++.| .|++||++....                             .....|...|.+++|+  +++|+
T Consensus       168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~  245 (366)
T 3k26_A          168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLIL  245 (366)
T ss_dssp             EECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEE
T ss_pred             EECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEE
Confidence            999999999999996 999999875321                             1222388899999999  67999


Q ss_pred             EEecCc-EEEEEcCCCce--------------eeeecCCCCccceEEEEEccC--CCCccceEEEEeCCCCeEEEecccc
Q psy11524        223 GACANV-IHIFDISSSSS--------------SNVTAPLSHSHEITQLAVNQT--GSLQERHVAFIDKNRDLYLSMWSHS  285 (323)
Q Consensus       223 ~~~~d~-i~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~~p~--g~~~d~~l~~~~~~~~~~~~~~~~~  285 (323)
                      +++.|+ |++||+++++.              +..  +..|...|.+++|+|+  +    ..|++++.++.+.+|++...
T Consensus       246 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~----~~l~~~~~dg~i~vwd~~~~  319 (366)
T 3k26_A          246 SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGR--FDYSQCDIWYMRFSMDFWQ----KMLALGNQVGKLYVWDLEVE  319 (366)
T ss_dssp             EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEE--EECSSCCSSCCCCEECTTS----SEEEEECTTSCEEEEECCSS
T ss_pred             EEecCCEEEEEeCCCccccccccccCCcchheecc--ccccCCcEEEEEEcCCCCC----cEEEEEecCCcEEEEECCCC
Confidence            999999 99999987754              444  5678888999999999  8    89999999999999998764


Q ss_pred             --------cCCCC--ccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        286 --------LDKPD--TGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       286 --------~~~~~--~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                              ....|  ...|.+++|+|++++|++++.||.|++|++.
T Consensus       320 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          320 DPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             SGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence                    34445  6899999999999999999999999999985

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-36  Score=251.17  Aligned_cols=237  Identities=16%  Similarity=0.247  Sum_probs=193.8

Q ss_pred             eeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc----eeEe-ec-cCCCeEEEEECCCCCEEEEEcCCCceE
Q psy11524         75 CRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK----ATKW-QA-HDGLILKVAWCSSTDLILSGGEDCKYK  147 (323)
Q Consensus        75 ~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~  147 (323)
                      .+.+ .|...|.+++|+|+  +|++++.+ +.|++|+....    ...+ .. |...|.+++|+|++++|++++.|++|+
T Consensus         7 ~~~~~~h~~~v~~~~~s~~--~las~~~D-~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~   83 (330)
T 2hes_X            7 IKSLKLYKEKIWSFDFSQG--ILATGSTD-RKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS   83 (330)
T ss_dssp             EEEEECCSSCEEEEEEETT--EEEEEESS-SCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ceeeccCCCceeeeccCCC--EEEEEcCC-CEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence            3444 49999999999998  88888777 69999998753    2334 34 999999999999999999999999999


Q ss_pred             eeeEEeCC--------CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCC-C----CeeeecCCCCccEEEEE
Q psy11524        148 ASFVWDTD--------GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKV-G----WSHSLDKPDTGSVYDLV  213 (323)
Q Consensus       148 ~i~v~d~~--------~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~-~----~~~~~~~~~~~~v~~~~  213 (323)
                         +||++        .+.+..+.+|...|.+++|+|++++|++++.| .|++||++ .    .....+.+|...|.+++
T Consensus        84 ---iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~  160 (330)
T 2hes_X           84 ---IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI  160 (330)
T ss_dssp             ---EEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred             ---EEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence               99984        23456678899999999999999999999997 99999984 2    13456778999999999


Q ss_pred             EcCCCCEEEEEecCc-EEEEEcCCC--ceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----
Q psy11524        214 WSNDATQIAGACANV-IHIFDISSS--SSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----  285 (323)
Q Consensus       214 ~~~~~~~l~~~~~d~-i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----  285 (323)
                      |+|++++|++++.|+ |++||..++  +++..  +.+|...|.+++|+|++.  ...++.++.++.+++|++...     
T Consensus       161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~--~~~l~s~s~D~~v~iw~~~~~~~~~~  236 (330)
T 2hes_X          161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAV--LNGHEGTVWSSDFDKTEG--VFRLCSGSDDSTVRVWKYMGDDEDDQ  236 (330)
T ss_dssp             ECSSSSEEEEEETTSCEEEEEEETTEEEEEEE--ECCCSSCEEEEEECCSSS--SCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEE--ccCCCCcEEEEEecCCCC--eeEEEEEeCCCeEEEEEecCCCcccc
Confidence            999999999999999 999998876  45666  789999999999999831  057888999999999987542     


Q ss_pred             -------cC-CCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        286 -------LD-KPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       286 -------~~-~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                             .. ..|...|.+++|++++ +|++++.||.|++|++.+
T Consensus       237 ~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~  280 (330)
T 2hes_X          237 QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVD  280 (330)
T ss_dssp             EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEET
T ss_pred             ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCC
Confidence                   12 2378999999999765 899999999999999753

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.5e-37  Score=257.84  Aligned_cols=237  Identities=17%  Similarity=0.276  Sum_probs=197.6

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc----eeEeeccCCCeEEEEECC--CCCEEEEEcCCCceEeeeEE
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK----ATKWQAHDGLILKVAWCS--STDLILSGGEDCKYKASFVW  152 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~i~v~  152 (323)
                      .|...|++++|+|+|++|++++.| +.|++||....    ...+.+|.+.|.+++|+|  ++++|++++.|++|+   +|
T Consensus        11 ~H~~~V~~v~~s~~g~~lasgs~D-~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~---iW   86 (316)
T 3bg1_A           11 SHEDMIHDAQMDYYGTRLATCSSD-RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI---IW   86 (316)
T ss_dssp             ---CCEEEEEECGGGCEEEEEETT-TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEE---EE
T ss_pred             cccCeEEEeeEcCCCCEEEEEeCC-CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEE---EE
Confidence            499999999999999999999877 59999998653    456889999999999986  489999999999999   99


Q ss_pred             eCCC---CeeeEeecCCCceeEEEEecC--CCEEEEEeCC-eEEEEeCCCC-e---eeecCCCCccEEEEEEcCC-----
Q psy11524        153 DTDG---RQLYSSLTHDHPISSLAWAPG--GDMFAVGSYN-TLRLCDKVGW-S---HSLDKPDTGSVYDLVWSND-----  217 (323)
Q Consensus       153 d~~~---~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~~-~i~i~d~~~~-~---~~~~~~~~~~v~~~~~~~~-----  217 (323)
                      |++.   .....+.+|...|.+++|+|+  +.+|++++.| .|++||++.. .   ......|...+.+++|+|+     
T Consensus        87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  166 (316)
T 3bg1_A           87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS  166 (316)
T ss_dssp             CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred             ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence            9964   355667789999999999997  7899999997 9999998753 1   2355678889999999997     


Q ss_pred             ------------CCEEEEEecCc-EEEEEcCCC---ceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEe
Q psy11524        218 ------------ATQIAGACANV-IHIFDISSS---SSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSM  281 (323)
Q Consensus       218 ------------~~~l~~~~~d~-i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~  281 (323)
                                  +++|++++.|+ |++||++.+   +.+..  +.+|...|.+++|+|++......|++++.|+.+++|+
T Consensus       167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~--l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~  244 (316)
T 3bg1_A          167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK--LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT  244 (316)
T ss_dssp             ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEEC--CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred             ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeee--cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence                        47899999999 999999765   34444  7889999999999998521125788999999999998


Q ss_pred             cccc--------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        282 WSHS--------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       282 ~~~~--------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +...        ....|...|.+++|+|+|++|++++.||.|++|+..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          245 CDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             ccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            7651        223467899999999999999999999999999974

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.6e-36  Score=255.75  Aligned_cols=236  Identities=11%  Similarity=0.124  Sum_probs=195.0

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeC-----CeEEEEeCCCCc------eeEeeccCCCeEEEEECCCCCEEEEEcCCCceE
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAK-----SLVIKPLSPNNK------ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYK  147 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~-----~~~v~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  147 (323)
                      .|...|++++|||||++|++++.+     ++.+++|+....      ......|...|.+++|+|++.+ ++++.||+|+
T Consensus        40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~  118 (357)
T 4g56_B           40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVE  118 (357)
T ss_dssp             CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTSCEE
T ss_pred             cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCCEEE
Confidence            389999999999999999999863     478999987543      3345678899999999999764 5677899999


Q ss_pred             eeeEEeCCC-Cee----eEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCC-
Q psy11524        148 ASFVWDTDG-RQL----YSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDAT-  219 (323)
Q Consensus       148 ~i~v~d~~~-~~~----~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~-  219 (323)
                         +||+.. +..    ....+|...|.+++|+|++++|++++.+ .|++||+++. ....+..|...|.+++|+|++. 
T Consensus       119 ---lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~  195 (357)
T 4g56_B          119 ---LWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT  195 (357)
T ss_dssp             ---EC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred             ---EeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence               999953 222    2344788999999999999999999996 9999998854 5567788999999999999875 


Q ss_pred             EEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccce
Q psy11524        220 QIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSV  294 (323)
Q Consensus       220 ~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v  294 (323)
                      ++++++.|+ |++||++++++........+...+.+++|+|++.   ..+++++.++.+++|++...    ....|...|
T Consensus       196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~---~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v  272 (357)
T 4g56_B          196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD---DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNI  272 (357)
T ss_dssp             CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST---TEEEEEESSSCEEEEESSCGGGCEEECCCSSCE
T ss_pred             eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhccc---ceEEEeecccceeEEECCCCcEeEEEeccceeE
Confidence            788999999 9999999998877644556778899999999862   67888999999999998765    456788999


Q ss_pred             eEEEEeeCC-CeeEeeecCCeEEEEEee
Q psy11524        295 YDLVWSSDA-TQIAGACANGSLLLGTII  321 (323)
Q Consensus       295 ~~~~~s~~g-~~l~s~~~dg~i~~~~l~  321 (323)
                      ++++|+|++ ++|++|+.|++|++|++.
T Consensus       273 ~~l~~sp~~~~~lasgs~D~~i~iwd~~  300 (357)
T 4g56_B          273 TGLAYSYHSSPFLASISEDCTVAVLDAD  300 (357)
T ss_dssp             EEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred             EEEEEcCCCCCEEEEEeCCCEEEEEECC
Confidence            999999997 578999999999999874

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.5e-36  Score=257.07  Aligned_cols=240  Identities=17%  Similarity=0.210  Sum_probs=199.8

Q ss_pred             ceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccC------------------CCeEEEEECC
Q psy11524         73 SLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHD------------------GLILKVAWCS  132 (323)
Q Consensus        73 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~------------------~~v~~~~~~~  132 (323)
                      ++.+.+.|...|.+++|+|+|++|++++.  +.+++|+....  ...+..+.                  ..|.+++|+|
T Consensus        56 ~~~~~~~h~~~V~~v~fspdg~~la~g~~--~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~  133 (393)
T 1erj_A           56 ELHKSLDHTSVVCCVKFSNDGEYLATGCN--KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP  133 (393)
T ss_dssp             EEEEEEECSSCCCEEEECTTSSEEEEECB--SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT
T ss_pred             eeEEecCCCCEEEEEEECCCCCEEEEEcC--CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC
Confidence            34456679999999999999999998764  36888887654  33443332                  2489999999


Q ss_pred             CCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecCCCCccEE
Q psy11524        133 STDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVY  210 (323)
Q Consensus       133 ~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~  210 (323)
                      +|++|++++.|+.|+   +||++ ++.+..+.+|...|.+++|+|++++|++++.| +|++||+++........+...+.
T Consensus       134 dg~~l~s~~~d~~i~---iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~  210 (393)
T 1erj_A          134 DGKFLATGAEDRLIR---IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT  210 (393)
T ss_dssp             TSSEEEEEETTSCEE---EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE
T ss_pred             CCCEEEEEcCCCeEE---EEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcE
Confidence            999999999999999   99996 55667788899999999999999999999997 99999998665443334677899


Q ss_pred             EEEEcC-CCCEEEEEecCc-EEEEEcCCCceeeeec-----CCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecc
Q psy11524        211 DLVWSN-DATQIAGACANV-IHIFDISSSSSSNVTA-----PLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWS  283 (323)
Q Consensus       211 ~~~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~  283 (323)
                      +++|+| ++++|++++.|+ |++||+++++.+..+.     ..+|...|.+++|+|++    ..+++++.++.+++|++.
T Consensus       211 ~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g----~~l~s~s~d~~v~~wd~~  286 (393)
T 1erj_A          211 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG----QSVVSGSLDRSVKLWNLQ  286 (393)
T ss_dssp             EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS----SEEEEEETTSEEEEEEC-
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC----CEEEEEeCCCEEEEEECC
Confidence            999999 899999999999 9999999988776521     15688899999999999    889999999999999886


Q ss_pred             cc----------------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        284 HS----------------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       284 ~~----------------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      ..                ....|...|.+++|+|++++|++|+.||.|++|++.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~  340 (393)
T 1erj_A          287 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK  340 (393)
T ss_dssp             --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred             CCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence            42                234578889999999999999999999999999964

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.5e-36  Score=251.92  Aligned_cols=235  Identities=16%  Similarity=0.155  Sum_probs=188.3

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCC-----eEEEEeCCCCc------eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEe
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKS-----LVIKPLSPNNK------ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKA  148 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~-----~~v~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  148 (323)
                      +...|.+++|+|||++|+++++..     +.+++|+....      ......+...|.+++|+|++ .|++++.||+|+ 
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~-  106 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVE-  106 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEE-
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEE-
Confidence            677899999999999998776321     23333332111      22334567889999999985 678999999999 


Q ss_pred             eeEEeCC-CCeee----EeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCC-E
Q psy11524        149 SFVWDTD-GRQLY----SSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDAT-Q  220 (323)
Q Consensus       149 i~v~d~~-~~~~~----~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~-~  220 (323)
                        +||++ ++...    ...+|...|++++|+|+|++|++++.| +|++||+++. .+..+.+|...|.+++|+|++. +
T Consensus       107 --lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  184 (344)
T 4gqb_B          107 --LWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV  184 (344)
T ss_dssp             --EEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred             --EEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence              99996 44332    245799999999999999999999997 9999998754 5667888999999999999885 7


Q ss_pred             EEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCcccee
Q psy11524        221 IAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVY  295 (323)
Q Consensus       221 l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~  295 (323)
                      |++++.|+ |++||+++++....+....+...+.+++|+|++.   ..+++++.++.+++|++...    .+..|...|+
T Consensus       185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~  261 (344)
T 4gqb_B          185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQS---EVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVT  261 (344)
T ss_dssp             EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCT---TEEEEEETTSEEEEEESCC--CCEEEECCSSCEE
T ss_pred             eeeeccccccccccccccceeeeeecceeeccceeeeecCCCC---cceEEeccCCcEEEEECCCCcEEEEEcCCCCCEE
Confidence            88999999 9999999999888743445667899999999762   67788899999999998765    4567899999


Q ss_pred             EEEEeeCC-CeeEeeecCCeEEEEEee
Q psy11524        296 DLVWSSDA-TQIAGACANGSLLLGTII  321 (323)
Q Consensus       296 ~~~~s~~g-~~l~s~~~dg~i~~~~l~  321 (323)
                      +++|+|+| ++|++|+.|++|++|++.
T Consensus       262 ~v~fsp~g~~~lasgs~D~~i~vwd~~  288 (344)
T 4gqb_B          262 GLVFSPHSVPFLASLSEDCSLAVLDSS  288 (344)
T ss_dssp             EEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred             EEEEccCCCeEEEEEeCCCeEEEEECC
Confidence            99999998 579999999999999864

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-36  Score=247.05  Aligned_cols=272  Identities=13%  Similarity=0.162  Sum_probs=222.6

Q ss_pred             eeeeeEeecccceeEeeEeccCCcceeeeeecc---cccc-ccceeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEE
Q psy11524         34 VKNHLTIRRYDGTVINYPISPYISVLHSYAASH---SWPQ-ALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKP  108 (323)
Q Consensus        34 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~  108 (323)
                      .+....+.+|.+.|.++.| |++..++....++   .|+. +.+....+ .|...|.+++|+|++++|++++.+ +.+++
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~~   85 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKD-TMING   85 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETT-SCEEE
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCC-CeEEE
Confidence            3555778999999999999 8885554443333   2441 22222222 389999999999999999998877 58998


Q ss_pred             eCCCCc-----eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEec-CCCEEE
Q psy11524        109 LSPNNK-----ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAP-GGDMFA  182 (323)
Q Consensus       109 ~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~  182 (323)
                      |+....     ...+..|...|.+++|  +++++++++.|+.|+   +|| .++....+..|...+.+++|+| ++++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~---~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  159 (313)
T 3odt_A           86 VPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAK---VWK-EGSLVYNLQAHNASVWDAKVVSFSENKFL  159 (313)
T ss_dssp             EETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEE---EEE-TTEEEEEEECCSSCEEEEEEEETTTTEEE
T ss_pred             EEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEE---EEc-CCcEEEecccCCCceeEEEEccCCCCEEE
Confidence            886543     5677889999999999  578999999999999   999 6677788888999999999998 899999


Q ss_pred             EEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccC
Q psy11524        183 VGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQT  260 (323)
Q Consensus       183 ~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~  260 (323)
                      +++.+ .|++||...........|...+.+++|+|++. +++++.|+ |++||+++++.+..  +..|...+.+++|+|+
T Consensus       160 ~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~  236 (313)
T 3odt_A          160 TASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRT--YEGHESFVYCIKLLPN  236 (313)
T ss_dssp             EEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEECTT
T ss_pred             EEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhh--hhcCCceEEEEEEecC
Confidence            99996 99999954433333334889999999999998 99999999 99999999999888  6789999999999999


Q ss_pred             CCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        261 GSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       261 g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      +     .+++++.++.+.+|++...    ....|...|.+++|+|+++ +++++.||.|++|++.+
T Consensus       237 ~-----~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          237 G-----DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK  296 (313)
T ss_dssp             S-----CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred             C-----CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence            6     4778888888999988765    4455778999999999998 66799999999999854

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.9e-37  Score=267.21  Aligned_cols=271  Identities=14%  Similarity=0.180  Sum_probs=203.4

Q ss_pred             eeEeecccceeEeeEeccC-Ccceeeeeecccccccccee-----------eecCCCCCEEEEEEcC-CCCeEEEEeeCC
Q psy11524         37 HLTIRRYDGTVINYPISPY-ISVLHSYAASHSWPQALSLC-----------RTLNVSPPVYSAAWSP-DSNKVLLTQAKS  103 (323)
Q Consensus        37 ~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~v~~~~~sp-~~~~l~~~~~~~  103 (323)
                      .....+|+..|++++|+|. +..+    ++|+.|+++++|           ....|...|++++|+| ++++|++++.| 
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~l----asGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D-  186 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTV----AVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME-  186 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCE----EEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS-
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEE----EEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC-
Confidence            3456788999999999995 5444    444444433333           2235899999999998 68899988777 


Q ss_pred             eEEEEeCCCCc-eeEee---ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCC
Q psy11524        104 LVIKPLSPNNK-ATKWQ---AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGD  179 (323)
Q Consensus       104 ~~v~~~~~~~~-~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~  179 (323)
                      +.|++||..+. ...+.   .+...+.+++|+|++++|++|+.||.|+   +||++++.+..+..|...|.+++|+|++.
T Consensus       187 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~---~wd~~~~~~~~~~~h~~~v~~v~~~p~~~  263 (435)
T 4e54_B          187 GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVI---LLNMDGKELWNLRMHKKKVTHVALNPCCD  263 (435)
T ss_dssp             SCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEE---EEESSSCBCCCSBCCSSCEEEEEECTTCS
T ss_pred             CEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEe---eeccCcceeEEEecccceEEeeeecCCCc
Confidence            69999999876 33332   2344578899999999999999999999   99999988889999999999999999876


Q ss_pred             -EEEEEeCC-eEEEEeCCCCe----eeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCcc--
Q psy11524        180 -MFAVGSYN-TLRLCDKVGWS----HSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSH--  250 (323)
Q Consensus       180 -~l~~~~~~-~i~i~d~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~--  250 (323)
                       +|++++.| .|++||++...    .....+|...|.+++|+|+|++|++++.|+ |++||+++++....  +..|..  
T Consensus       264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~--~~~~~~~~  341 (435)
T 4e54_B          264 WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG--LIPHPHRH  341 (435)
T ss_dssp             SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEE--ECCCCCCC
T ss_pred             eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceE--Eecccccc
Confidence             67788886 99999987432    223456889999999999999999999999 99999999877665  233221  


Q ss_pred             ----ceEEEEEccCCCCccceEEEEe------------CCCCeEEEecccc-----cCCCCccceeEE-EEeeCCCeeEe
Q psy11524        251 ----EITQLAVNQTGSLQERHVAFID------------KNRDLYLSMWSHS-----LDKPDTGSVYDL-VWSSDATQIAG  308 (323)
Q Consensus       251 ----~v~~~~~~p~g~~~d~~l~~~~------------~~~~~~~~~~~~~-----~~~~~~~~v~~~-~~s~~g~~l~s  308 (323)
                          .+....|+|++    ..+.+..            .++.+.+|+...+     +...|...|.++ +|+|+|++|++
T Consensus       342 ~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~las  417 (435)
T 4e54_B          342 FQHLTPIKAAWHPRY----NLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLAS  417 (435)
T ss_dssp             CSSSCCCBCEECSSS----SCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEE
T ss_pred             cccceeEEEEEcCCC----CEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEE
Confidence                22344566665    3333321            1223556665543     344567888887 69999999998


Q ss_pred             eecCCeEEEEEeec
Q psy11524        309 ACANGSLLLGTIIQ  322 (323)
Q Consensus       309 ~~~dg~i~~~~l~~  322 (323)
                      |+ |+.|+||++.+
T Consensus       418 g~-d~~i~iW~~~~  430 (435)
T 4e54_B          418 AM-GYHILIWSQQE  430 (435)
T ss_dssp             EC-SSEEEECCCC-
T ss_pred             Ec-CCcEEEEECCc
Confidence            76 88999999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.2e-36  Score=256.75  Aligned_cols=272  Identities=14%  Similarity=0.173  Sum_probs=220.7

Q ss_pred             EeecccceeEeeEeccCCc-ceeeeeecc---cccc----c-cc------eeeecC-----------CCCCEEEEEEcCC
Q psy11524         39 TIRRYDGTVINYPISPYIS-VLHSYAASH---SWPQ----A-LS------LCRTLN-----------VSPPVYSAAWSPD   92 (323)
Q Consensus        39 ~~~~~~~~v~~~~~~~~~~-~~~~~~~~~---~~~~----~-~~------~~~~~~-----------~~~~v~~~~~sp~   92 (323)
                      ....|.+.|.++.|+|++. .++....++   .|+.    . .+      ....+.           |...|++++|+|+
T Consensus        40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  119 (425)
T 1r5m_A           40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD  119 (425)
T ss_dssp             EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred             eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence            3345669999999999996 555443333   2332    1 11      111121           4669999999999


Q ss_pred             CCeEEEEeeCCeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC-Cee-----------
Q psy11524         93 SNKVLLTQAKSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG-RQL-----------  159 (323)
Q Consensus        93 ~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~-~~~-----------  159 (323)
                      +++|++++.+ +.|++|+..+. ...+..|...|.+++|+|++++|++++.|+.|+   +||+.. +.+           
T Consensus       120 ~~~l~~~~~d-g~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~---iwd~~~~~~~~~~~~~~~~~~  195 (425)
T 1r5m_A          120 GNSIVTGVEN-GELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTI---LWNVISGTVMQHFELKETGGS  195 (425)
T ss_dssp             SSEEEEEETT-SCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEE---EEETTTTEEEEEECCC-----
T ss_pred             CCEEEEEeCC-CeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEE---EEECCCCcEEEEeeccccCcc
Confidence            9999998777 59999996555 667888999999999999999999999999999   999842 211           


Q ss_pred             ---------------------------------------------eEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEe
Q psy11524        160 ---------------------------------------------YSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCD  193 (323)
Q Consensus       160 ---------------------------------------------~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d  193 (323)
                                                                   ..+..|...|.+++|+|++++|++++.+ .|++||
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d  275 (425)
T 1r5m_A          196 SINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH  275 (425)
T ss_dssp             ----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred             ceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence                                                         2334567889999999999999999986 999999


Q ss_pred             CCC-CeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEE
Q psy11524        194 KVG-WSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFI  271 (323)
Q Consensus       194 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~  271 (323)
                      ++. .....+..|...+.+++|+|++ ++++++.|+ |++||+++++.+..  +..|...+.+++|+|++    ..++++
T Consensus       276 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~s~~~----~~l~~~  348 (425)
T 1r5m_A          276 GGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLAL--SIVDGVPIFAGRISQDG----QKYAVA  348 (425)
T ss_dssp             SSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEE--EECTTCCEEEEEECTTS----SEEEEE
T ss_pred             CCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEe--cccCCccEEEEEEcCCC----CEEEEE
Confidence            875 4555667789999999999999 999999999 99999999998887  67788899999999998    899999


Q ss_pred             eCCCCeEEEecccc------------------------cCCCCcc--ceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        272 DKNRDLYLSMWSHS------------------------LDKPDTG--SVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       272 ~~~~~~~~~~~~~~------------------------~~~~~~~--~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +.++.+.+|++...                        ....|..  .|.+++|+|++++|++++.||.|++|++.
T Consensus       349 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          349 FMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             ETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             ECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            99999999998642                        2344544  99999999999999999999999999974

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.6e-36  Score=257.15  Aligned_cols=276  Identities=12%  Similarity=0.087  Sum_probs=222.6

Q ss_pred             eeeeeEeecccceeEeeEeccCCcceeeeeecc---ccccc-cc------eee-ecCCCCCEEEEEEcCC----C---Ce
Q psy11524         34 VKNHLTIRRYDGTVINYPISPYISVLHSYAASH---SWPQA-LS------LCR-TLNVSPPVYSAAWSPD----S---NK   95 (323)
Q Consensus        34 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~-~~------~~~-~~~~~~~v~~~~~sp~----~---~~   95 (323)
                      +.....+.+|.+.|.++.|+|  ..++....++   .|+.. .+      ... ...|...|.+++|+|+    +   ++
T Consensus         6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A            6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence            345567889999999999999  4444443333   35422 22      222 2358999999999999    9   99


Q ss_pred             EEEEeeCCeEEEEeCCCCc-------eeEeecc-----CCCeEEEEEC----CCCCE-EEEEcCCCceEeeeEEeCCC--
Q psy11524         96 VLLTQAKSLVIKPLSPNNK-------ATKWQAH-----DGLILKVAWC----SSTDL-ILSGGEDCKYKASFVWDTDG--  156 (323)
Q Consensus        96 l~~~~~~~~~v~~~~~~~~-------~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~d~~i~~i~v~d~~~--  156 (323)
                      |++++.+ +.|++|+....       ...+..|     ...|.+++|+    |++++ |++++.||.|+   +||+..  
T Consensus        84 l~s~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~---iwd~~~~~  159 (397)
T 1sq9_A           84 VATTSFS-GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTY---IWKFHPFA  159 (397)
T ss_dssp             EEEEETT-SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEE---EEEEESSS
T ss_pred             EEEEcCC-CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEE---EEeCCccc
Confidence            9988776 59999986543       4566777     5899999999    99999 99999999999   999854  


Q ss_pred             -----Ceee-----Ee-------ecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-eeeecCC---C---CccEEE
Q psy11524        157 -----RQLY-----SS-------LTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-SHSLDKP---D---TGSVYD  211 (323)
Q Consensus       157 -----~~~~-----~~-------~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~---~---~~~v~~  211 (323)
                           +.+.     .+       ..+...+.+++|+|++ ++++++.+ .|++||++.. ....+..   |   ...+.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~  238 (397)
T 1sq9_A          160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS  238 (397)
T ss_dssp             SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred             cccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccce
Confidence                 4444     55       3478899999999999 99999986 9999998854 4555666   7   889999


Q ss_pred             EEEcCCCCEEEEEecC---c-EEEEEcCCCceeeeecCCC-------------CccceEEEEEccCCCCccceEEEEeCC
Q psy11524        212 LVWSNDATQIAGACAN---V-IHIFDISSSSSSNVTAPLS-------------HSHEITQLAVNQTGSLQERHVAFIDKN  274 (323)
Q Consensus       212 ~~~~~~~~~l~~~~~d---~-i~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~~~p~g~~~d~~l~~~~~~  274 (323)
                      ++|+|++++|++++.|   + |++||+++++.+..  +..             |...|.+++|+|++    ..|++++.+
T Consensus       239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d  312 (397)
T 1sq9_A          239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS--LSVPTHSSQASLGEFAHSSWVMSLSFNDSG----ETLCSAGWD  312 (397)
T ss_dssp             EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEE--ECBC--------CCBSBSSCEEEEEECSSS----SEEEEEETT
T ss_pred             EEECCCCCEEEEEecCCCCceEEEEECCCCcccce--eccCcccccccccccccCCcEEEEEECCCC----CEEEEEeCC
Confidence            9999999999999999   9 99999999998887  566             88999999999998    788888888


Q ss_pred             CCeEEEecccc----cCC------CC---------------ccceeEEEEeeCC----------CeeEeeecCCeEEEEE
Q psy11524        275 RDLYLSMWSHS----LDK------PD---------------TGSVYDLVWSSDA----------TQIAGACANGSLLLGT  319 (323)
Q Consensus       275 ~~~~~~~~~~~----~~~------~~---------------~~~v~~~~~s~~g----------~~l~s~~~dg~i~~~~  319 (323)
                      +.+.+|++...    ...      .|               ...|.+++|+|+|          ++|++++.||.|++|+
T Consensus       313 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~  392 (397)
T 1sq9_A          313 GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  392 (397)
T ss_dssp             SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             CeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence            88888888664    223      45               8899999999998          7999999999999999


Q ss_pred             eec
Q psy11524        320 IIQ  322 (323)
Q Consensus       320 l~~  322 (323)
                      +.+
T Consensus       393 ~~~  395 (397)
T 1sq9_A          393 EAG  395 (397)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            864

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5.4e-35  Score=242.02  Aligned_cols=235  Identities=16%  Similarity=0.248  Sum_probs=201.8

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-  155 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-  155 (323)
                      .|...|++++|+|++++|++++.+ +.|++|+....  ...+..|...|.+++|+|++++|++++.|+.|+   +||++ 
T Consensus        21 gh~~~v~~~~~s~~~~~l~s~~~d-g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~---vwd~~~   96 (312)
T 4ery_A           21 GHTKAVSSVKFSPNGEWLASSSAD-KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK---IWDVSS   96 (312)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETT-SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE---EEETTT
T ss_pred             ccCCcEEEEEECCCCCEEEEeeCC-CeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE---EEECCC
Confidence            589999999999999999998777 59999998654  567789999999999999999999999999999   99995 


Q ss_pred             CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCC-CeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEE
Q psy11524        156 GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIF  232 (323)
Q Consensus       156 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iw  232 (323)
                      ++.+..+..|...|.+++|+|++++|++++.| .|++||++. .....+..|...+.+++|+|++++|++++.|+ |++|
T Consensus        97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  176 (312)
T 4ery_A           97 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  176 (312)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence            67778889999999999999999999999996 999999874 45667778999999999999999999999999 9999


Q ss_pred             EcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccc---eeEEEEeeCCCe
Q psy11524        233 DISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGS---VYDLVWSSDATQ  305 (323)
Q Consensus       233 d~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~---v~~~~~s~~g~~  305 (323)
                      |+++++.+..+ ...+...+..++|+|++    ..+++++.++.+.+|++...    ....|...   +......+++++
T Consensus       177 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (312)
T 4ery_A          177 DTASGQCLKTL-IDDDNPPVSFVKFSPNG----KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW  251 (312)
T ss_dssp             ETTTCCEEEEE-CCSSCCCEEEEEECTTS----SEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCE
T ss_pred             ECCCCceeeEE-eccCCCceEEEEECCCC----CEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcE
Confidence            99999887763 34566789999999998    88889999999999998764    23334332   222333467889


Q ss_pred             eEeeecCCeEEEEEeec
Q psy11524        306 IAGACANGSLLLGTIIQ  322 (323)
Q Consensus       306 l~s~~~dg~i~~~~l~~  322 (323)
                      |++|+.||.|++|++.+
T Consensus       252 l~sg~~dg~i~vwd~~~  268 (312)
T 4ery_A          252 IVSGSEDNLVYIWNLQT  268 (312)
T ss_dssp             EEECCTTSCEEEEETTT
T ss_pred             EEEECCCCEEEEEECCC
Confidence            99999999999999753

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.6e-35  Score=246.30  Aligned_cols=235  Identities=12%  Similarity=0.150  Sum_probs=198.1

Q ss_pred             eec-CCCCCEEEEEE-----cC-CCCeEEEEeeCCeEEEEeCCCCc---------eeEeeccCCCeEEEEECCCCCEEEE
Q psy11524         76 RTL-NVSPPVYSAAW-----SP-DSNKVLLTQAKSLVIKPLSPNNK---------ATKWQAHDGLILKVAWCSSTDLILS  139 (323)
Q Consensus        76 ~~~-~~~~~v~~~~~-----sp-~~~~l~~~~~~~~~v~~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~  139 (323)
                      ..+ .|...|++++|     +| ++++|++|+.| +.|++|+....         ...+.+|...|.+++|+|++.++++
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D-~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s   93 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRD-KTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS   93 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETT-SCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCC-CEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence            344 49999999999     77 89999998877 59999987532         3467899999999999999999999


Q ss_pred             EcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeec---CCCCccEEEEEE
Q psy11524        140 GGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLD---KPDTGSVYDLVW  214 (323)
Q Consensus       140 ~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~---~~~~~~v~~~~~  214 (323)
                      ++.|++|+   +||++ ++.+..+.+|...|.+++|+|++++|++++.| .|++||+.+......   ..|...+.+++|
T Consensus        94 ~s~D~~v~---lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~  170 (343)
T 2xzm_R           94 SSWDKTLR---LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRY  170 (343)
T ss_dssp             EETTSEEE---EEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEE
T ss_pred             EcCCCcEE---EEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeee
Confidence            99999999   99995 67778889999999999999999999999996 999999886544333   268889999999


Q ss_pred             cCCC----------CEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecc
Q psy11524        215 SNDA----------TQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWS  283 (323)
Q Consensus       215 ~~~~----------~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~  283 (323)
                      +|++          .+|++++.|+ |++|| ...+....  +..|...|.+++|+|++    ..|++++.++.+++|++.
T Consensus       171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~--~~~h~~~v~~~~~s~~g----~~l~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          171 SPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYT--FKAHESNVNHLSISPNG----KYIATGGKDKKLLIWDIL  243 (343)
T ss_dssp             CCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEE--EECCSSCEEEEEECTTS----SEEEEEETTCEEEEEESS
T ss_pred             ccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEE--EcCccccceEEEECCCC----CEEEEEcCCCeEEEEECC
Confidence            9987          7899999999 99999 44555555  67899999999999999    899999999999999984


Q ss_pred             cccCC----CCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        284 HSLDK----PDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       284 ~~~~~----~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      .....    .+...|.+++|+|++++|++ +.|+.|++|++..
T Consensus       244 ~~~~~~~~~~~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~  285 (343)
T 2xzm_R          244 NLTYPQREFDAGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMT  285 (343)
T ss_dssp             CCSSCSEEEECSSCEEEEEECSSSCEEEE-EESSCEEEEESSS
T ss_pred             CCcccceeecCCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCC
Confidence            32111    13567999999999987765 5688899999753

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-35  Score=249.62  Aligned_cols=233  Identities=15%  Similarity=0.248  Sum_probs=202.7

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc----eeEeeccCCCeEEEEECCC--CCEEEEEcCCCceEeeeEE
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK----ATKWQAHDGLILKVAWCSS--TDLILSGGEDCKYKASFVW  152 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~i~v~  152 (323)
                      .|...|++++|+|++++|++++.+ +.|++|+....    ...+..|...|.+++|+|+  +++|++++.||.|+   +|
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~---iw   84 (379)
T 3jrp_A            9 AHNELIHDAVLDYYGKRLATCSSD-KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL---IW   84 (379)
T ss_dssp             ECCCCEEEEEECSSSSEEEEEETT-SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE---EE
T ss_pred             CCcccEEEEEEcCCCCEEEEEECC-CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE---EE
Confidence            399999999999999999998777 69999998632    4567889999999999987  89999999999999   99


Q ss_pred             eCCCC---eeeEeecCCCceeEEEEecC--CCEEEEEeCC-eEEEEeCCCC---eeeecCCCCccEEEEEEcC-------
Q psy11524        153 DTDGR---QLYSSLTHDHPISSLAWAPG--GDMFAVGSYN-TLRLCDKVGW---SHSLDKPDTGSVYDLVWSN-------  216 (323)
Q Consensus       153 d~~~~---~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~~-~i~i~d~~~~---~~~~~~~~~~~v~~~~~~~-------  216 (323)
                      |+...   ....+..|...|.+++|+|+  +.+|++++.+ .|++||++..   .......|...|.+++|+|       
T Consensus        85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  164 (379)
T 3jrp_A           85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  164 (379)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-----
T ss_pred             EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccc
Confidence            99644   56677789999999999999  9999999996 9999998754   3335567889999999999       


Q ss_pred             ------CCCEEEEEecCc-EEEEEcCCCce----eeeecCCCCccceEEEEEccC---CCCccceEEEEeCCCCeEEEec
Q psy11524        217 ------DATQIAGACANV-IHIFDISSSSS----SNVTAPLSHSHEITQLAVNQT---GSLQERHVAFIDKNRDLYLSMW  282 (323)
Q Consensus       217 ------~~~~l~~~~~d~-i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~p~---g~~~d~~l~~~~~~~~~~~~~~  282 (323)
                            ++.+|++++.|+ |++||+++++.    ...  +..|...|.+++|+|+   +    ..+++++.++.+.+|++
T Consensus       165 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~h~~~v~~~~~sp~~~~~----~~l~s~~~dg~i~iwd~  238 (379)
T 3jrp_A          165 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST--LEGHSDWVRDVAWSPTVLLR----SYLASVSQDRTCIIWTQ  238 (379)
T ss_dssp             -----CTTCEEEEEETTSCEEEEEEETTTTEEEEEEE--ECCCSSCEEEEEECCCCSSS----EEEEEEETTSCEEEEEE
T ss_pred             cccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEE--EecccCcEeEEEECCCCCCC----CeEEEEeCCCEEEEEeC
Confidence                  699999999999 99999987653    233  6789999999999999   7    89999999999999998


Q ss_pred             ccc---------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        283 SHS---------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       283 ~~~---------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      ...         ....|...|.+++|+|+|++|++++.||.|++|++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            763         222368899999999999999999999999999985

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.7e-36  Score=255.03  Aligned_cols=270  Identities=12%  Similarity=0.110  Sum_probs=198.8

Q ss_pred             cceeEeeEeccCCcceeeeeeccc---cccccceeee------------------c-CCCCCEEEEEEcCCCCeEEEEee
Q psy11524         44 DGTVINYPISPYISVLHSYAASHS---WPQALSLCRT------------------L-NVSPPVYSAAWSPDSNKVLLTQA  101 (323)
Q Consensus        44 ~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------------------~-~~~~~v~~~~~sp~~~~l~~~~~  101 (323)
                      ..+|++++|+||+..++.......   .+..+++|..                  + .|...|.++++  +++.++++..
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~   91 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCN   91 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEEC
Confidence            458999999999965554322111   1122333321                  2 25667777765  4567776643


Q ss_pred             C----------CeEEEEeCCCCc---eeE--------eeccCCCeEEEEECCCCCEEEE--EcCCCceEeeeEEeCCCCe
Q psy11524        102 K----------SLVIKPLSPNNK---ATK--------WQAHDGLILKVAWCSSTDLILS--GGEDCKYKASFVWDTDGRQ  158 (323)
Q Consensus       102 ~----------~~~v~~~~~~~~---~~~--------~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~~i~v~d~~~~~  158 (323)
                      +          +..+++|+....   ...        ...+...+.+++|+|||+++++  ++.|++|+   +||++...
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~---iwd~~~~~  168 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR---IIDPSDLT  168 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE---EEETTTTE
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE---EeECCCCc
Confidence            2          346788875432   111        1223456889999999998765  44789999   99997444


Q ss_pred             eeEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCC-CCeee--ecCCCCccEEEEEEcCCCCEEEEEecCc-----EE
Q psy11524        159 LYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKV-GWSHS--LDKPDTGSVYDLVWSNDATQIAGACANV-----IH  230 (323)
Q Consensus       159 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~-~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----i~  230 (323)
                      ......|...|.+++|+|||+++++++.+.+.+|+.. +....  ....|...+.+++|+|+++++++++.++     ++
T Consensus       169 ~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~  248 (365)
T 4h5i_A          169 EKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLT  248 (365)
T ss_dssp             EEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEE
T ss_pred             EEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEe
Confidence            4333457788999999999999999998867777654 54332  4456888899999999999999988764     67


Q ss_pred             EEEcCCCcee--eeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----cCCCCccceeEEEEeeCC
Q psy11524        231 IFDISSSSSS--NVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----LDKPDTGSVYDLVWSSDA  303 (323)
Q Consensus       231 iwd~~~~~~~--~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g  303 (323)
                      +||+......  ....+.+|...|++++|+|+|    .+|++++.|+.+++|++...     +..+|...|++++|||||
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg----~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg  324 (365)
T 4h5i_A          249 KISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG----ELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDS  324 (365)
T ss_dssp             EEEEETTEEEEEEEEEEESSCSCEEEEEECTTS----CEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTS
T ss_pred             ecccccceecceeeeeecCCCCCeEeEEECCCC----CceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCC
Confidence            7887765432  121256788899999999999    89999999999999999775     457899999999999999


Q ss_pred             CeeEeeecCCeEEEEEeec
Q psy11524        304 TQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       304 ~~l~s~~~dg~i~~~~l~~  322 (323)
                      ++||+|+.|++|+||+|..
T Consensus       325 ~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          325 TYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             CEEEEEETTSEEEEEECCT
T ss_pred             CEEEEEeCCCeEEEEEcCC
Confidence            9999999999999999853

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-36  Score=260.47  Aligned_cols=272  Identities=10%  Similarity=0.095  Sum_probs=221.6

Q ss_pred             cccceeEeeEeccCCcceeeeeecc---cccccc-----ceeeec-CCCCCEEEEEEcCC-CCeEEEEeeCCeEEEEeCC
Q psy11524         42 RYDGTVINYPISPYISVLHSYAASH---SWPQAL-----SLCRTL-NVSPPVYSAAWSPD-SNKVLLTQAKSLVIKPLSP  111 (323)
Q Consensus        42 ~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~-~~~~~v~~~~~sp~-~~~l~~~~~~~~~v~~~~~  111 (323)
                      .|...|.++.|+|++..++....++   .|+...     +....+ .|...|.+++|+|+ +++|++++.+ +.|++|+.
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-g~v~iwd~  143 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNN-GEIFIWDM  143 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSS-SCEEBCBT
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCC-CeEEEEEC
Confidence            5889999999999997776555544   355332     233444 48999999999998 8888888766 69999998


Q ss_pred             CCce------e-----EeeccCCCeEEEEECCC-CCEEEEEcCCCceEeeeEEeCC-CCeeeEeecC------CCceeEE
Q psy11524        112 NNKA------T-----KWQAHDGLILKVAWCSS-TDLILSGGEDCKYKASFVWDTD-GRQLYSSLTH------DHPISSL  172 (323)
Q Consensus       112 ~~~~------~-----~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~------~~~v~~~  172 (323)
                      ....      .     ....|...|.+++|+|+ +.+|++++.|+.|+   +||++ ++.+..+..+      ...+.++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~---iwd~~~~~~~~~~~~~~~~~~~~~~v~~~  220 (416)
T 2pm9_A          144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFAS---IWDLKAKKEVIHLSYTSPNSGIKQQLSVV  220 (416)
T ss_dssp             TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEE---EEETTTTEEEEEECCCCCSSCCCCCEEEE
T ss_pred             CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEE---EEECCCCCcceEEeccccccccCCceEEE
Confidence            7543      1     23568899999999999 78999999999999   99996 5555666555      7889999


Q ss_pred             EEecCC-CEEEEEeCC----eEEEEeCCC--CeeeecC-CCCccEEEEEEcC-CCCEEEEEecCc-EEEEEcCCCceeee
Q psy11524        173 AWAPGG-DMFAVGSYN----TLRLCDKVG--WSHSLDK-PDTGSVYDLVWSN-DATQIAGACANV-IHIFDISSSSSSNV  242 (323)
Q Consensus       173 ~~~p~~-~~l~~~~~~----~i~i~d~~~--~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~  242 (323)
                      +|+|++ .++++++.+    .|++||++.  .....+. +|...|.+++|+| ++++|++++.|+ |++||+++++.+..
T Consensus       221 ~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~  300 (416)
T 2pm9_A          221 EWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQ  300 (416)
T ss_dssp             EECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEE
T ss_pred             EECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcccee
Confidence            999997 678888884    899999885  3455566 7999999999999 999999999999 99999999999888


Q ss_pred             ecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccccC-----------------------------------
Q psy11524        243 TAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLD-----------------------------------  287 (323)
Q Consensus       243 ~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~~~-----------------------------------  287 (323)
                        +..|...|.+++|+|++.   ..+++++.++.+.+|++.....                                   
T Consensus       301 --~~~~~~~v~~~~~s~~~~---~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (416)
T 2pm9_A          301 --FPARGNWCFKTKFAPEAP---DLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFH  375 (416)
T ss_dssp             --EECSSSCCCCEEECTTCT---TEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSC
T ss_pred             --ecCCCCceEEEEECCCCC---CEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccccccc
Confidence              678899999999999973   5777777777888887765310                                   


Q ss_pred             ----CCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        288 ----KPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       288 ----~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                          ..|..++.+++|+|+|++|++++.||.|++|++..
T Consensus       376 ~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          376 LQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             CCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred             ccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence                01466788999999999999999999999999864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.7e-36  Score=254.16  Aligned_cols=239  Identities=17%  Similarity=0.217  Sum_probs=201.1

Q ss_pred             ceeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEee
Q psy11524         73 SLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKAS  149 (323)
Q Consensus        73 ~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i  149 (323)
                      .+.+.+ .|.+.|++++|+|++++|++|+.| +.|++||....  ...+..|...|.+++|+|++++|++++.|+.++  
T Consensus        57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D-~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~--  133 (380)
T 3iz6_a           57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQD-GRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACS--  133 (380)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSCEEEEETT-SEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCE--
T ss_pred             EEeecccccccEEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEE--
Confidence            344555 499999999999999999999877 59999998665  667889999999999999999999999999999  


Q ss_pred             eEEeCCC--------CeeeEeecCCCceeEEEEecC-CCEEEEEeCC-eEEEEeCCCC-eeeec-----CCCCccEEEEE
Q psy11524        150 FVWDTDG--------RQLYSSLTHDHPISSLAWAPG-GDMFAVGSYN-TLRLCDKVGW-SHSLD-----KPDTGSVYDLV  213 (323)
Q Consensus       150 ~v~d~~~--------~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~~-~i~i~d~~~~-~~~~~-----~~~~~~v~~~~  213 (323)
                       +|++..        .....+.+|...+.++.|+|+ +..|++++.| +|++||++.. ....+     .+|...+.+++
T Consensus       134 -iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~  212 (380)
T 3iz6_a          134 -IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS  212 (380)
T ss_dssp             -EEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE
T ss_pred             -EEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE
Confidence             999842        123457789999999999996 4568999887 9999998754 44333     56888999999


Q ss_pred             EcC-CCCEEEEEecCc-EEEEEcC-CCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----c
Q psy11524        214 WSN-DATQIAGACANV-IHIFDIS-SSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----L  286 (323)
Q Consensus       214 ~~~-~~~~l~~~~~d~-i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~  286 (323)
                      |+| ++++|++++.|+ |++||++ .++.+..  +.+|...|.+++|+|++    ..+++++.|+.+++|++...    .
T Consensus       213 ~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~--~~~h~~~v~~v~~~p~~----~~l~s~s~D~~i~lwd~~~~~~~~~  286 (380)
T 3iz6_a          213 INSLNANMFISGSCDTTVRLWDLRITSRAVRT--YHGHEGDINSVKFFPDG----QRFGTGSDDGTCRLFDMRTGHQLQV  286 (380)
T ss_dssp             ECSSSCCEEEEEETTSCEEEEETTTTCCCCEE--ECCCSSCCCEEEECTTS----SEEEEECSSSCEEEEETTTTEEEEE
T ss_pred             eecCCCCEEEEEECCCeEEEEECCCCCcceEE--ECCcCCCeEEEEEecCC----CeEEEEcCCCeEEEEECCCCcEEEE
Confidence            987 889999999999 9999998 4566666  68899999999999998    78888888999999988764    1


Q ss_pred             CC-------CCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        287 DK-------PDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       287 ~~-------~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      ..       .+...|.+++|+|+|++|++|+.||.|++|++.
T Consensus       287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~  328 (380)
T 3iz6_a          287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL  328 (380)
T ss_dssp             ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred             ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence            11       122358999999999999999999999999963

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.3e-36  Score=256.53  Aligned_cols=266  Identities=14%  Similarity=0.096  Sum_probs=209.9

Q ss_pred             eEeeEeccCCcceeeeeecc---cccc-ccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeec
Q psy11524         47 VINYPISPYISVLHSYAASH---SWPQ-ALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQA  120 (323)
Q Consensus        47 v~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~  120 (323)
                      +.+++|+|+++.++....++   .|+. +.+....+.....+....|+|++++|++++.+ +.|++|+....  ...+..
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~  137 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTE-GDIKVLDSNFNLQREIDQA  137 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETT-SCEEEECTTSCEEEEETTS
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECC-CCEEEEeCCCcceeeeccc
Confidence            44789999996665544433   2432 12222223333445556789999999998777 59999998776  344568


Q ss_pred             cCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-
Q psy11524        121 HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-  197 (323)
Q Consensus       121 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-  197 (323)
                      |...|.+++|+|++++|++++.|+.|+   +||++ ++.+..+.+|...|.+++|+|++++|++++.| .|++||++.. 
T Consensus       138 h~~~v~~~~~~~~~~~l~s~s~d~~i~---iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~  214 (420)
T 3vl1_A          138 HVSEITKLKFFPSGEALISSSQDMQLK---IWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT  214 (420)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTSEEE---EEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             ccCccEEEEECCCCCEEEEEeCCCeEE---EEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence            999999999999999999999999999   99995 67778888999999999999999999999996 9999998854 


Q ss_pred             eeeecCC---CCccEE---------------------EEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccce
Q psy11524        198 SHSLDKP---DTGSVY---------------------DLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEI  252 (323)
Q Consensus       198 ~~~~~~~---~~~~v~---------------------~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v  252 (323)
                      ....+..   +...+.                     +++|+|++++|++++.|+ |++||+++++.+... ...|...+
T Consensus       215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v  293 (420)
T 3vl1_A          215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL-PSKFTCSC  293 (420)
T ss_dssp             EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEE-CCTTSSCE
T ss_pred             eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEc-ccccCCCc
Confidence            3333332   333444                     455578999999999999 999999999877763 45688899


Q ss_pred             EEEEEccCCCCccc-eEEEEeCCCCeEEEecccc------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        253 TQLAVNQTGSLQER-HVAFIDKNRDLYLSMWSHS------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       253 ~~~~~~p~g~~~d~-~l~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      .+++|+|++    . .+++++.++.+.+|++...      +...|...|.++. .+++++|++++.||.|++|++.+
T Consensus       294 ~~~~~~~~~----~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          294 NSLTVDGNN----ANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY-FAAGALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             EEEEECSSC----TTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE-EETTEEEEEETTTEEEEEEEECC
T ss_pred             eeEEEeCCC----CCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE-eCCCCEEEEecCCccEEEEeccC
Confidence            999999998    5 8999999999999999764      1122567788885 56889999999999999999854

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-35  Score=255.80  Aligned_cols=269  Identities=16%  Similarity=0.193  Sum_probs=217.2

Q ss_pred             cceeEeeEeccCCc-ceeeeeecc------cccccccee-----------eecCCCCCEEEEEEcCCCCeEEEEeeCCeE
Q psy11524         44 DGTVINYPISPYIS-VLHSYAASH------SWPQALSLC-----------RTLNVSPPVYSAAWSPDSNKVLLTQAKSLV  105 (323)
Q Consensus        44 ~~~v~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~-----------~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~  105 (323)
                      ...|.+++|+|+++ .++.....+      +.|...++|           ..+.|...|++++|+|++++|++++.+ +.
T Consensus        12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~   90 (416)
T 2pm9_A           12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDN-GS   90 (416)
T ss_dssp             EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESS-SC
T ss_pred             hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccC-Ce
Confidence            34788999999986 444332211      333333333           344588999999999999999998776 69


Q ss_pred             EEEeCCCC------ceeEeeccCCCeEEEEECCC-CCEEEEEcCCCceEeeeEEeCCCCe-------ee---EeecCCCc
Q psy11524        106 IKPLSPNN------KATKWQAHDGLILKVAWCSS-TDLILSGGEDCKYKASFVWDTDGRQ-------LY---SSLTHDHP  168 (323)
Q Consensus       106 v~~~~~~~------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~i~v~d~~~~~-------~~---~~~~~~~~  168 (323)
                      |++|+...      ....+..|...|.+++|+|+ +++|++++.|+.|+   +||+....       ..   ....|...
T Consensus        91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~---iwd~~~~~~~~~~~~~~~~~~~~~~~~~  167 (416)
T 2pm9_A           91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF---IWDMNKCTESPSNYTPLTPGQSMSSVDE  167 (416)
T ss_dssp             EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE---BCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred             EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE---EEECCCCccccccccccccccccCCCCC
Confidence            99999876      25677889999999999998 89999999999999   99996332       22   23568889


Q ss_pred             eeEEEEecC-CCEEEEEeCC-eEEEEeCCCC-eeeecCCC------CccEEEEEEcCCC-CEEEEEecC----cEEEEEc
Q psy11524        169 ISSLAWAPG-GDMFAVGSYN-TLRLCDKVGW-SHSLDKPD------TGSVYDLVWSNDA-TQIAGACAN----VIHIFDI  234 (323)
Q Consensus       169 v~~~~~~p~-~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~d----~i~iwd~  234 (323)
                      |.+++|+|+ +.+|++++.+ .|++||++.. ....+..+      ...+.+++|+|++ .++++++.|    .|++||+
T Consensus       168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~  247 (416)
T 2pm9_A          168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL  247 (416)
T ss_dssp             CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred             eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence            999999998 7889998886 9999998865 44444444      7889999999997 688888887    3999999


Q ss_pred             CCC-ceeeeecCC-CCccceEEEEEcc-CCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCC-Cee
Q psy11524        235 SSS-SSSNVTAPL-SHSHEITQLAVNQ-TGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDA-TQI  306 (323)
Q Consensus       235 ~~~-~~~~~~~~~-~~~~~v~~~~~~p-~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g-~~l  306 (323)
                      +++ +++..  +. +|...|.+++|+| ++    ..+++++.++.+.+|++...    ....|...|.+++|+|++ ++|
T Consensus       248 ~~~~~~~~~--~~~~~~~~v~~~~~s~~~~----~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l  321 (416)
T 2pm9_A          248 RNANTPLQT--LNQGHQKGILSLDWCHQDE----HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLF  321 (416)
T ss_dssp             TSTTSCSBC--CCSCCSSCEEEEEECSSCS----SCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEE
T ss_pred             CCCCCCcEE--eecCccCceeEEEeCCCCC----CeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEE
Confidence            986 55555  56 7999999999999 77    78888999999999998764    445678999999999999 899


Q ss_pred             EeeecCCeEEEEEeec
Q psy11524        307 AGACANGSLLLGTIIQ  322 (323)
Q Consensus       307 ~s~~~dg~i~~~~l~~  322 (323)
                      ++++.||.|++|++.+
T Consensus       322 ~s~~~d~~i~iw~~~~  337 (416)
T 2pm9_A          322 ACASFDNKIEVQTLQN  337 (416)
T ss_dssp             EECCSSSEEEEEESCC
T ss_pred             EEEecCCcEEEEEccC
Confidence            9999999999999853

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.9e-35  Score=250.21  Aligned_cols=271  Identities=14%  Similarity=0.175  Sum_probs=215.2

Q ss_pred             EeecccceeEeeEeccCCcceeeeeecc---cccc-ccceeeec--CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCC
Q psy11524         39 TIRRYDGTVINYPISPYISVLHSYAASH---SWPQ-ALSLCRTL--NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPN  112 (323)
Q Consensus        39 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~  112 (323)
                      ...+|...+....+++++..++....++   .|+. +.+....+  .|...|++++|+|++++|++++.+ +.|++|+..
T Consensus        86 ~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~~  164 (401)
T 4aez_A           86 DAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGN-GLVDIYDVE  164 (401)
T ss_dssp             ECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETT-SCEEEEETT
T ss_pred             eCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCC-CeEEEEECc
Confidence            3446665544433443333343333333   3542 23332333  378999999999999999998777 699999987


Q ss_pred             Cc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC--CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-
Q psy11524        113 NK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD--GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-  187 (323)
Q Consensus       113 ~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-  187 (323)
                      ..  ...+..|...|.+++|  +++.|++++.||.|+   +||++  ......+..|...|.+++|+|++++|++++.| 
T Consensus       165 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~---i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~  239 (401)
T 4aez_A          165 SQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIH---HHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN  239 (401)
T ss_dssp             TCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEE---EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEE---EEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence            65  6778899999999999  467999999999999   99996  56677888899999999999999999999996 


Q ss_pred             eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCC-EEEEEe--cCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCC
Q psy11524        188 TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDAT-QIAGAC--ANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGS  262 (323)
Q Consensus       188 ~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~  262 (323)
                      .|++||++.. ....+..|...|.+++|+|++. ++++++  .|+ |++||+++++.+..  + .+...+.+++|+|++ 
T Consensus       240 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~--~-~~~~~v~~~~~s~~~-  315 (401)
T 4aez_A          240 VVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT--V-DAGSQVTSLIWSPHS-  315 (401)
T ss_dssp             CEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE--E-ECSSCEEEEEECSSS-
T ss_pred             eEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE--E-eCCCcEEEEEECCCC-
Confidence            9999998854 5556778999999999999775 555554  688 99999999998887  3 456789999999998 


Q ss_pred             CccceEEEE--eCCCCeEEEecccc------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        263 LQERHVAFI--DKNRDLYLSMWSHS------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       263 ~~d~~l~~~--~~~~~~~~~~~~~~------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                         ..+++.  ..++.+.+|++...      ....|...|.+++|+|+|++|++++.||.|++|++.+
T Consensus       316 ---~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          316 ---KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             ---SEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             ---CeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence               777774  37888999988763      2456789999999999999999999999999999854

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.4e-35  Score=252.72  Aligned_cols=270  Identities=9%  Similarity=0.066  Sum_probs=210.4

Q ss_pred             eeEe-ecccceeEeeEecc-CCcceeeeeecccccccccee--------------eecCCCCCEEEEEEcCCCCeEEEEe
Q psy11524         37 HLTI-RRYDGTVINYPISP-YISVLHSYAASHSWPQALSLC--------------RTLNVSPPVYSAAWSPDSNKVLLTQ  100 (323)
Q Consensus        37 ~~~~-~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~v~~~~~sp~~~~l~~~~  100 (323)
                      ...+ ++|.+.|.+++|+| ++..++    +++.|++.++|              ..+.|...|++++|+|++++|++++
T Consensus        55 ~~~~~~~h~~~V~~~~~s~~~~~~l~----s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s  130 (437)
T 3gre_A           55 IATLMENEPNSITSSAVSPGETPYLI----TGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSS  130 (437)
T ss_dssp             EEEECTTTTSCEEEEEEECSSSCEEE----EEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             EeeeccCCCCceEEEEECCCCCCEEE----EecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEe
Confidence            3456 88999999999999 995444    44444333333              2335899999999999999999988


Q ss_pred             eCCeEEEEeCCC----Cc-eeEee----------c--cCCCeEEEE--ECCCCCEEEEEcCCCceEeeeEEeCC-CCeee
Q psy11524        101 AKSLVIKPLSPN----NK-ATKWQ----------A--HDGLILKVA--WCSSTDLILSGGEDCKYKASFVWDTD-GRQLY  160 (323)
Q Consensus       101 ~~~~~v~~~~~~----~~-~~~~~----------~--~~~~v~~~~--~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~  160 (323)
                      .+ +.|++|+..    +. .....          .  +...+.++.  ++|++.+|++++.|+.|+   +||++ ++.+.
T Consensus       131 ~d-g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~---iwd~~~~~~~~  206 (437)
T 3gre_A          131 KD-GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVI---IFDIRTLERLQ  206 (437)
T ss_dssp             TT-SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEE---EEETTTCCEEE
T ss_pred             CC-CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEE---EEeCCCCeeeE
Confidence            77 699999873    21 11111          1  456677776  668899999999999999   99995 67777


Q ss_pred             Eeec--CCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCe-eeecC-CCCccEEEEEEcC----CCCEEEEEecCc-EE
Q psy11524        161 SSLT--HDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWS-HSLDK-PDTGSVYDLVWSN----DATQIAGACANV-IH  230 (323)
Q Consensus       161 ~~~~--~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~-~~~~~-~~~~~v~~~~~~~----~~~~l~~~~~d~-i~  230 (323)
                      .+..  |...|.+++|+|++++|++++.| .|++||++... +..+. .|...|.+++|+|    ++.+|++++.|+ |+
T Consensus       207 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~  286 (437)
T 3gre_A          207 IIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLT  286 (437)
T ss_dssp             EEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEE
T ss_pred             EEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEE
Confidence            7877  78999999999999999999996 99999988653 34433 6778999996664    688999999999 99


Q ss_pred             EEEcCCCceeeeec----------------------CCC--CccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-
Q psy11524        231 IFDISSSSSSNVTA----------------------PLS--HSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-  285 (323)
Q Consensus       231 iwd~~~~~~~~~~~----------------------~~~--~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-  285 (323)
                      +||+++++.+..+.                      +.+  |...|.+++|+ ++    ..|+.++.++.+++|++... 
T Consensus       287 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~----~~l~s~~~d~~i~~wd~~~~~  361 (437)
T 3gre_A          287 IWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND----KILLTDEATSSIVMFSLNELS  361 (437)
T ss_dssp             EEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT----EEEEEEGGGTEEEEEETTCGG
T ss_pred             EEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc----eEEEecCCCCeEEEEECCCcc
Confidence            99999988766532                      111  66678888998 55    67888888888888887654 


Q ss_pred             ---cC-------------------------------------CCCccceeEEEEeeC--CCeeEeeecCCeEEEEE
Q psy11524        286 ---LD-------------------------------------KPDTGSVYDLVWSSD--ATQIAGACANGSLLLGT  319 (323)
Q Consensus       286 ---~~-------------------------------------~~~~~~v~~~~~s~~--g~~l~s~~~dg~i~~~~  319 (323)
                         ..                                     ..|...|++++|+++  +.+|++|+.||.|++|+
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          362 SSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             GCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence               11                                     127899999999999  77999999999999995

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-35  Score=260.87  Aligned_cols=271  Identities=10%  Similarity=0.030  Sum_probs=200.1

Q ss_pred             eEeecccceeEeeEeccCCcce--eeeeeccccccccceeee-------------------c-CCCCCEEEEEEcCCCCe
Q psy11524         38 LTIRRYDGTVINYPISPYISVL--HSYAASHSWPQALSLCRT-------------------L-NVSPPVYSAAWSPDSNK   95 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------------------~-~~~~~v~~~~~sp~~~~   95 (323)
                      ..+.+|.+.|.+++|+|++...  ..++++++.|+++++|..                   + .|...|++++|+|++ .
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~  279 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-T  279 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-E
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-e
Confidence            3467788999999999972100  134555555555554431                   2 377899999999864 7


Q ss_pred             EEEEeeCCeEEEEeCCCCc---eeEeeccCCCeEEE--EECCCC-CEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCC-
Q psy11524         96 VLLTQAKSLVIKPLSPNNK---ATKWQAHDGLILKV--AWCSST-DLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDH-  167 (323)
Q Consensus        96 l~~~~~~~~~v~~~~~~~~---~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~-  167 (323)
                      |++|+.| +.|++||....   ...+..|...|.++  +|+|++ .+|++++.|++|+   +||++ ++....+.+|.. 
T Consensus       280 lasgs~D-gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvk---lWD~~~~~~~~~~~~~~~~  355 (524)
T 2j04_B          280 VVCGFKN-GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFY---IFNPKDIATTKTTVSRFRG  355 (524)
T ss_dssp             EEEEETT-SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEE---EECGGGHHHHCEEEEECSC
T ss_pred             EEEEeCC-CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEE---EEECCCCCccccccccccc
Confidence            8888766 69999998753   34578999999999  578888 8999999999999   99995 444445555543 


Q ss_pred             -ceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeee
Q psy11524        168 -PISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVT  243 (323)
Q Consensus       168 -~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~  243 (323)
                       .|.+++|+|+++.+++++.+ +|++||++.. ....+.+|.+.|.+++|+|+|++|++|+.|+ |++||+..+ .+.. 
T Consensus       356 ~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~-  433 (524)
T 2j04_B          356 SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHG-  433 (524)
T ss_dssp             CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTC-
T ss_pred             CcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccc-
Confidence             58899999999999998886 9999998754 4455667999999999999999999999999 999997653 2222 


Q ss_pred             cCCC-----CccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc---cCCCCccceeEEEEeeCCC---eeEeeecC
Q psy11524        244 APLS-----HSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---LDKPDTGSVYDLVWSSDAT---QIAGACAN  312 (323)
Q Consensus       244 ~~~~-----~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~---~l~s~~~d  312 (323)
                       ...     +...+.+++|+|++    +.+.+++. -.+..|.....   ...+|...|.+++|+|+++   .||+|+.|
T Consensus       434 -~~~~~~~~~~~~v~~v~~sp~g----~~~~~~~~-~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~  507 (524)
T 2j04_B          434 -IKNSSATQKSLRLWKWDYSIKD----DKYRIDSS-YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSA  507 (524)
T ss_dssp             -C------CCCCEEEECBCCSSS----CEEEECCC-CCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTT
T ss_pred             -cccCccceeeeEEEEeccCCCC----CeEEccCC-ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccC
Confidence             111     11257899999998    66766552 12222221111   4556889999999999964   99999999


Q ss_pred             CeEEEEEee
Q psy11524        313 GSLLLGTII  321 (323)
Q Consensus       313 g~i~~~~l~  321 (323)
                      |.|+||++.
T Consensus       508 g~vrlw~l~  516 (524)
T 2j04_B          508 GLLTLEYLS  516 (524)
T ss_dssp             SEEEEEECS
T ss_pred             ceEEEEEcc
Confidence            999999974

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.1e-34  Score=277.81  Aligned_cols=274  Identities=13%  Similarity=0.159  Sum_probs=220.7

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeecc---ccc-cccceeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCC
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASH---SWP-QALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPN  112 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~  112 (323)
                      ..+.+|.+.|.+++|+|+++.+++...++   .|+ .+.+....+ .|...|.+++|+|+|++|++++.+ +.|++||..
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-~~v~vwd~~  687 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSAD-KKVKIWDSA  687 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT-SEEEEEETT
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCC-CeEEEEECC
Confidence            56789999999999999996665544443   254 233333444 389999999999999999998877 599999987


Q ss_pred             Cc--eeEeeccCCCeEEEEECC--CCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC
Q psy11524        113 NK--ATKWQAHDGLILKVAWCS--STDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN  187 (323)
Q Consensus       113 ~~--~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~  187 (323)
                      +.  ...+..|...|.+++|+|  ++.++++++.|+.|+   +||++ ++....+.+|...|.+++|+|+++++++++.|
T Consensus       688 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~---vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d  764 (1249)
T 3sfz_A          688 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK---LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD  764 (1249)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEE---EEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred             CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEE---EEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECC
Confidence            65  677889999999999999  456899999999999   99995 67778888999999999999999999999996


Q ss_pred             -eEEEEeCCCCee-e-------------------------------------------------------ecCCCCccEE
Q psy11524        188 -TLRLCDKVGWSH-S-------------------------------------------------------LDKPDTGSVY  210 (323)
Q Consensus       188 -~i~i~d~~~~~~-~-------------------------------------------------------~~~~~~~~v~  210 (323)
                       .|++||++.... .                                                       ...+|...+.
T Consensus       765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~  844 (1249)
T 3sfz_A          765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ  844 (1249)
T ss_dssp             SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCC
T ss_pred             CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceE
Confidence             999999753311 0                                                       1125677899


Q ss_pred             EEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEe--------
Q psy11524        211 DLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSM--------  281 (323)
Q Consensus       211 ~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~--------  281 (323)
                      +++|+|+++++++++.++ |++||+.+++.+..  +.+|...|.+++|+|++    ..+.+++.++.+.+|+        
T Consensus       845 ~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~--~~~h~~~v~~v~~spdg----~~l~s~s~dg~v~vw~~~~~~~~~  918 (1249)
T 3sfz_A          845 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD--CRGHLSWVHGVMFSPDG----SSFLTASDDQTIRVWETKKVCKNS  918 (1249)
T ss_dssp             EEEECSSTTEEEEECSSSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEEHHHHHSCC
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEcCCCceeee--cCCCccceEEEEECCCC----CEEEEEeCCCeEEEEEccccceee
Confidence            999999999999999999 99999999998888  78999999999999998    4555555555555554        


Q ss_pred             -----------------------------------------------------------------------cccc----c
Q psy11524        282 -----------------------------------------------------------------------WSHS----L  286 (323)
Q Consensus       282 -----------------------------------------------------------------------~~~~----~  286 (323)
                                                                                             +...    .
T Consensus       919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~  998 (1249)
T 3sfz_A          919 AIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS  998 (1249)
T ss_dssp             SSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEE
T ss_pred             eecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeee
Confidence                                                                                   3222    2


Q ss_pred             CCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        287 DKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       287 ~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      ...|...|.+++|+|+|++|++++.||.|++|++.
T Consensus       999 ~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~ 1033 (1249)
T 3sfz_A          999 GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ 1033 (1249)
T ss_dssp             CCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETT
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence            34567778888888888888888888888888763

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4e-34  Score=265.99  Aligned_cols=276  Identities=15%  Similarity=0.173  Sum_probs=232.0

Q ss_pred             eeeEeecccceeEeeEeccCCcceeeeeecc---ccc-cccceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeC
Q psy11524         36 NHLTIRRYDGTVINYPISPYISVLHSYAASH---SWP-QALSLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLS  110 (323)
Q Consensus        36 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~  110 (323)
                      ....+.+|.+.|.+++|+|++..++....++   .|+ .+.+..+.+. |..+|.+++|+|++++|++++.+ +.|++|+
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~vw~   83 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD-FRIRVFN   83 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT-SEEEEEE
T ss_pred             cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCC-CeEEEEE
Confidence            3467789999999999999998777666555   476 4555555554 89999999999999999998776 6999999


Q ss_pred             CCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC--CeeeEeecCCCceeEEEEec-CCCEEEEEe
Q psy11524        111 PNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG--RQLYSSLTHDHPISSLAWAP-GGDMFAVGS  185 (323)
Q Consensus       111 ~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~--~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~  185 (323)
                      ..+.  ...+..|.+.|.+++|+|++++|++++.||.|+   +||++.  .....+..|...|.+++|+| ++..+++++
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~---vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  160 (814)
T 3mkq_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK---LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC  160 (814)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEE---EEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred             CCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEE---EEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence            8765  667888999999999999999999999999999   999963  45667788999999999999 888999999


Q ss_pred             CC-eEEEEeCCCC-eee-ecCCCCccEEEEEEcC--CCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEcc
Q psy11524        186 YN-TLRLCDKVGW-SHS-LDKPDTGSVYDLVWSN--DATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQ  259 (323)
Q Consensus       186 ~~-~i~i~d~~~~-~~~-~~~~~~~~v~~~~~~~--~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p  259 (323)
                      .+ .|++||+.+. ... ....+...+.+++|+|  ++.+|++++.|+ |++||+++++.+..  +..|...|.+++|+|
T Consensus       161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~  238 (814)
T 3mkq_A          161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT--LEGHMSNVSFAVFHP  238 (814)
T ss_dssp             TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEE--EECCSSCEEEEEECS
T ss_pred             CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEE--EcCCCCCEEEEEEcC
Confidence            96 9999998743 333 3344558899999999  999999999999 99999999998887  678899999999999


Q ss_pred             CCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCee-EeeecCCeEEEEEee
Q psy11524        260 TGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQI-AGACANGSLLLGTII  321 (323)
Q Consensus       260 ~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l-~s~~~dg~i~~~~l~  321 (323)
                      ++    ..+++++.++.+.+|+....    ....|...+.+++|+|+|+.+ ++++.|+.+.+|++.
T Consensus       239 ~~----~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (814)
T 3mkq_A          239 TL----PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG  301 (814)
T ss_dssp             SS----SEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECS
T ss_pred             CC----CEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcC
Confidence            98    78999999999999998764    445567899999999999743 555567778888763

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.7e-34  Score=243.26  Aligned_cols=232  Identities=18%  Similarity=0.325  Sum_probs=201.1

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc----eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK----ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD  155 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~  155 (323)
                      |..+|++++|+|++++|++++.+ +.|++|+....    ...+..|...|.+++|+|++++|++++.|+.|+   +||++
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~---vwd~~   82 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNN-HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAY---VWTLK   82 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSS-SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEE---EEEEE
T ss_pred             cCCCeEEEEECCCCCEEEEEeCC-CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEE---EEECC
Confidence            88999999999999999988776 69999997664    556788999999999999999999999999999   99996


Q ss_pred             CCe---eeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCe-----eeecCCCCccEEEEEEcCCCCEEEEEec
Q psy11524        156 GRQ---LYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWS-----HSLDKPDTGSVYDLVWSNDATQIAGACA  226 (323)
Q Consensus       156 ~~~---~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~  226 (323)
                      ...   ...+..|...|.+++|+|++++|++++.+ .|++||++...     ......|...+.+++|+|++++|++++.
T Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  162 (372)
T 1k8k_C           83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  162 (372)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence            543   33346688899999999999999999996 99999987432     2344668899999999999999999999


Q ss_pred             Cc-EEEEEcC------------------CCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc--
Q psy11524        227 NV-IHIFDIS------------------SSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS--  285 (323)
Q Consensus       227 d~-i~iwd~~------------------~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~--  285 (323)
                      |+ |++||++                  .++.+..  +..|...+.+++|+|++    ..+++++.++.+.+|++...  
T Consensus       163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~i~d~~~~~~  236 (372)
T 1k8k_C          163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE--SSSSCGWVHGVCFSANG----SRVAWVSHDSTVCLADADKKMA  236 (372)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE--CCCCSSCEEEEEECSSS----SEEEEEETTTEEEEEEGGGTTE
T ss_pred             CCCEEEEEcccccccccccccccccccchhhheEe--cCCCCCeEEEEEECCCC----CEEEEEeCCCEEEEEECCCCce
Confidence            99 9999953                  5677777  67899999999999998    79999999999999998765  


Q ss_pred             --cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        286 --LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       286 --~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                        ....|...|.+++|+|++++|+++ .|+.|++|++.+
T Consensus       237 ~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          237 VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             eEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence              344577899999999999988887 899999999864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.1e-33  Score=236.99  Aligned_cols=240  Identities=18%  Similarity=0.220  Sum_probs=200.3

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc------eeEeeccCCCeEEEEECC--CCCEEEEEcCCCceEeee
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK------ATKWQAHDGLILKVAWCS--STDLILSGGEDCKYKASF  150 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~------~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~i~  150 (323)
                      .|.+.|++++|+|++++|++++.+ +.|++|+....      ...+..|...|.+++|+|  ++++|++++.||.|+   
T Consensus         9 gH~~~v~~~~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~---   84 (351)
T 3f3f_A            9 GHDDLVHDVVYDFYGRHVATCSSD-QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK---   84 (351)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETT-SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE---
T ss_pred             ccccceeEEEEcCCCCEEEEeeCC-CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE---
Confidence            499999999999999999998777 69999997743      445678999999999999  699999999999999   


Q ss_pred             EEeCCC----------CeeeEeecCCCceeEEEEecC--CCEEEEEeCC-eEEEEeCCCCe-eee-------------cC
Q psy11524        151 VWDTDG----------RQLYSSLTHDHPISSLAWAPG--GDMFAVGSYN-TLRLCDKVGWS-HSL-------------DK  203 (323)
Q Consensus       151 v~d~~~----------~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~~-~i~i~d~~~~~-~~~-------------~~  203 (323)
                      +||++.          +....+..|...|.+++|+|+  +.+|++++.| .|++||++... ...             ..
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            999964          446777889999999999999  9999999996 99999986432 111             12


Q ss_pred             CCCccEEEEEEcCC---CCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEE
Q psy11524        204 PDTGSVYDLVWSND---ATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYL  279 (323)
Q Consensus       204 ~~~~~v~~~~~~~~---~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~  279 (323)
                      .+...+.+++|+|+   +.++++++.++ +.+|+...++......+.+|...|.+++|+|++......+++++.++.+.+
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence            46778999999997   89999999999 988887777653322278899999999999996211147888899999999


Q ss_pred             Eecccc--------------------------------------------------cCCCCccceeEEEEeeCCCeeEee
Q psy11524        280 SMWSHS--------------------------------------------------LDKPDTGSVYDLVWSSDATQIAGA  309 (323)
Q Consensus       280 ~~~~~~--------------------------------------------------~~~~~~~~v~~~~~s~~g~~l~s~  309 (323)
                      |++...                                                  ....|...|++++|+|++++|+++
T Consensus       245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~  324 (351)
T 3f3f_A          245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSA  324 (351)
T ss_dssp             EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred             EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence            988651                                                  234578899999999999999999


Q ss_pred             ecCCeEEEEEeec
Q psy11524        310 CANGSLLLGTIIQ  322 (323)
Q Consensus       310 ~~dg~i~~~~l~~  322 (323)
                      +.||.|++|++..
T Consensus       325 ~~dg~v~iw~~~~  337 (351)
T 3f3f_A          325 GDDGKVRLWKATY  337 (351)
T ss_dssp             ETTSCEEEEEECT
T ss_pred             cCCCcEEEEecCc
Confidence            9999999999853

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1e-33  Score=243.98  Aligned_cols=262  Identities=16%  Similarity=0.216  Sum_probs=209.9

Q ss_pred             eEeeEeccCCcceeeeeecc--ccc-cccceeeec---CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEe
Q psy11524         47 VINYPISPYISVLHSYAASH--SWP-QALSLCRTL---NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKW  118 (323)
Q Consensus        47 v~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~  118 (323)
                      ++.+.||+++ .|+..+...  .|| .++++.+.+   .|...|++++|+|+|++|++|+.+ +.|++|+....  +..+
T Consensus       108 ~~~l~wS~~n-~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D-g~v~iWd~~~~~~~~~~  185 (420)
T 4gga_A          108 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-AEVQLWDVQQQKRLRNM  185 (420)
T ss_dssp             CBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT-SCEEEEETTTTEEEEEE
T ss_pred             ceeEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC-CeEEEEEcCCCcEEEEE
Confidence            4557788754 444333221  476 344444433   477899999999999999998877 69999998766  6778


Q ss_pred             eccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC--CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCC
Q psy11524        119 QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD--GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKV  195 (323)
Q Consensus       119 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~  195 (323)
                      .+|...+.+++|+  +..|++++.|+.++   +||..  ...+..+.+|...+..+.|+|+++++++++.| .+++||..
T Consensus       186 ~~h~~~v~~~s~~--~~~l~sgs~d~~i~---~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~  260 (420)
T 4gga_A          186 TSHSARVGSLSWN--SYILSSGSRSGHIH---HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA  260 (420)
T ss_dssp             CCCSSCEEEEEEE--TTEEEEEETTSEEE---EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred             eCCCCceEEEeeC--CCEEEEEeCCCcee---EeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeec
Confidence            8999999988875  67999999999999   99985  55667788999999999999999999999996 99999976


Q ss_pred             CC-----eeeecCCCCccEEEEEEcCCCC-EEEEE--ecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccc
Q psy11524        196 GW-----SHSLDKPDTGSVYDLVWSNDAT-QIAGA--CANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQER  266 (323)
Q Consensus       196 ~~-----~~~~~~~~~~~v~~~~~~~~~~-~l~~~--~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~  266 (323)
                      ..     .......|...|.+++|+|++. .++++  +.|+ |++||+.+++....  +. +...+.++.|+|++    +
T Consensus       261 ~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~--~~-~~~~v~~~~~~~~~----~  333 (420)
T 4gga_A          261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA--VD-AHSQVCSILWSPHY----K  333 (420)
T ss_dssp             CCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE--EE-CSSCEEEEEEETTT----T
T ss_pred             cccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee--ec-cccceeeeeecCCC----C
Confidence            42     2345667889999999999654 55543  4688 99999999998887  33 44578899999998    6


Q ss_pred             eEEEEe--CCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        267 HVAFID--KNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       267 ~l~~~~--~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      .+.+..  .++.+.+|++...    .+.+|.+.|++++|+|||++|++|+.|++|++|++.+
T Consensus       334 ~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          334 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             eEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            666554  5788888888765    5567999999999999999999999999999999854

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.1e-33  Score=229.81  Aligned_cols=235  Identities=14%  Similarity=0.176  Sum_probs=191.0

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeecccccccccee----------eec-CCCCCEEEEEEcCC--CCeEEEEeeCCe
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLC----------RTL-NVSPPVYSAAWSPD--SNKVLLTQAKSL  104 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~~~~v~~~~~sp~--~~~l~~~~~~~~  104 (323)
                      ..+.+|.+.|.+++|+|+|+.    ++++++|++.++|          ..+ .|..+|.+++|+|+  +++|++++.| +
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~----las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D-~   77 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKR----MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-G   77 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSE----EEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT-T
T ss_pred             eeccCCcCceEEEEECCCCCE----EEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC-C
Confidence            457799999999999999954    4455545444444          333 38999999999864  8899998877 5


Q ss_pred             EEEEeCCCCc----eeEeeccCCCeEEEEECCC--CCEEEEEcCCCceEeeeEEeCCCC---eeeEeecCCCceeEEEEe
Q psy11524        105 VIKPLSPNNK----ATKWQAHDGLILKVAWCSS--TDLILSGGEDCKYKASFVWDTDGR---QLYSSLTHDHPISSLAWA  175 (323)
Q Consensus       105 ~v~~~~~~~~----~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~i~v~d~~~~---~~~~~~~~~~~v~~~~~~  175 (323)
                      .|++|+....    ...+..|...|.+++|+|+  +.+|++++.|++|+   +||++..   ....+..|...|.+++|+
T Consensus        78 ~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~---~wd~~~~~~~~~~~~~~h~~~v~~~~~~  154 (297)
T 2pm7_B           78 KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS---VVEFKENGTTSPIIIDAHAIGVNSASWA  154 (297)
T ss_dssp             EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE---EEEBCSSSCBCCEEEECCSSCEEEEEEC
T ss_pred             EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEE---EEEecCCCceeeeeeecccCccceEeec
Confidence            9999998753    4556789999999999997  88999999999999   9999632   245677899999999999


Q ss_pred             cC-------------CCEEEEEeCC-eEEEEeCCCC-----eeeecCCCCccEEEEEEcCCC---CEEEEEecCc-EEEE
Q psy11524        176 PG-------------GDMFAVGSYN-TLRLCDKVGW-----SHSLDKPDTGSVYDLVWSNDA---TQIAGACANV-IHIF  232 (323)
Q Consensus       176 p~-------------~~~l~~~~~~-~i~i~d~~~~-----~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~-i~iw  232 (323)
                      |+             +++|++++.| .|++||++..     ....+.+|...|.+++|+|++   .+|++++.|+ |++|
T Consensus       155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iW  234 (297)
T 2pm7_B          155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW  234 (297)
T ss_dssp             CCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence            97             5789999997 9999998642     334677899999999999984   8999999999 9999


Q ss_pred             EcCCCce---eeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        233 DISSSSS---SNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       233 d~~~~~~---~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      |++++..   ...+....|...|.+++|+|++    ..|++++.++.+++|+...
T Consensus       235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG----NVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EESSTTSCCEEEESSSSCCSSCEEEEEECSSS----CCEEEEETTSCEEEEEECT
T ss_pred             EeCCCCCccceeeeecccCCCcEEEEEECCCC----CEEEEEcCCCcEEEEEECC
Confidence            9987531   1221125678899999999999    8999999999999998754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.3e-33  Score=238.62  Aligned_cols=277  Identities=14%  Similarity=0.124  Sum_probs=207.4

Q ss_pred             eeEeecccceeEeeEecc-CCcceeeeeecc---ccccc-cceeeec--------------CCCCCEEEEEEcC-CCCeE
Q psy11524         37 HLTIRRYDGTVINYPISP-YISVLHSYAASH---SWPQA-LSLCRTL--------------NVSPPVYSAAWSP-DSNKV   96 (323)
Q Consensus        37 ~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~---~~~~~-~~~~~~~--------------~~~~~v~~~~~sp-~~~~l   96 (323)
                      ...+.+|.+.|.++.|+| ++..++....++   .|+.. ......+              .|...|.+++|+| ++++|
T Consensus        36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  115 (408)
T 4a11_B           36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF  115 (408)
T ss_dssp             EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred             eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence            456778999999999999 996555444333   24311 1111111              2889999999999 77788


Q ss_pred             EEEeeCCeEEEEeCCCCc-eeEeeccCCCeEEEEECCC---CCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeE
Q psy11524         97 LLTQAKSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSS---TDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISS  171 (323)
Q Consensus        97 ~~~~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~  171 (323)
                      ++++.+ +.|++|+.... ......+...+.++.|+|.   +.++++++.++.|+   +||++ ++.+..+..|...|.+
T Consensus       116 ~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~d~~~~~~~~~~~~~~~~v~~  191 (408)
T 4a11_B          116 TSSSFD-KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQ---LCDLKSGSCSHILQGHRQEILA  191 (408)
T ss_dssp             EEEETT-SEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEE---EEESSSSCCCEEECCCCSCEEE
T ss_pred             EEEeCC-CeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEE---EEeCCCcceeeeecCCCCcEEE
Confidence            887666 69999998876 3334458889999999985   45999999999999   99996 6677788889999999


Q ss_pred             EEEecCCCE-EEEEeCC-eEEEEeCCCC--eeeec---------------CCCCccEEEEEEcCCCCEEEEEecCc-EEE
Q psy11524        172 LAWAPGGDM-FAVGSYN-TLRLCDKVGW--SHSLD---------------KPDTGSVYDLVWSNDATQIAGACANV-IHI  231 (323)
Q Consensus       172 ~~~~p~~~~-l~~~~~~-~i~i~d~~~~--~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~~~d~-i~i  231 (323)
                      ++|+|+++. +++++.+ .|++||++..  .....               ..|...|.+++|+|++++|++++.|+ |++
T Consensus       192 ~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  271 (408)
T 4a11_B          192 VSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL  271 (408)
T ss_dssp             EEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEE
Confidence            999999984 8888886 9999998643  22222               46888999999999999999999999 999


Q ss_pred             EEcCCCceeeeecCCCCc----cceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCC
Q psy11524        232 FDISSSSSSNVTAPLSHS----HEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDA  303 (323)
Q Consensus       232 wd~~~~~~~~~~~~~~~~----~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g  303 (323)
                      ||+++++....  ...+.    .......+....   ...+.+...++.+.+|++...    ....|...|.+++|+|++
T Consensus       272 wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~  346 (408)
T 4a11_B          272 WNSSNGENTLV--NYGKVCNNSKKGLKFTVSCGC---SSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF  346 (408)
T ss_dssp             EETTTCCBCCC--CCCCCCCCCSSCCCCEECCSS---SSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTT
T ss_pred             EECCCCcccee--ccccccccccccceeEEecCC---CceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCC
Confidence            99998876554  22111    111111222221   145555566667777776554    445688999999999999


Q ss_pred             CeeEeeecCCeEEEEEeec
Q psy11524        304 TQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       304 ~~l~s~~~dg~i~~~~l~~  322 (323)
                      ++|++++.||.|++|++..
T Consensus       347 ~~l~s~~~dg~i~iw~~~~  365 (408)
T 4a11_B          347 QELYSGSRDCNILAWVPSL  365 (408)
T ss_dssp             TEEEEEETTSCEEEEEECC
T ss_pred             CEEEEECCCCeEEEEeCCC
Confidence            9999999999999999853

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-35  Score=251.25  Aligned_cols=229  Identities=17%  Similarity=0.294  Sum_probs=190.2

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc----eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK----ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD  155 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~  155 (323)
                      +..+|++++|+|++++|++++.+ +.|++|+....    ...+..|...|.+++|+|++++|++++.|+.|+   +||+.
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~---vwd~~   85 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTAT-NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAY---VYEKR   85 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSS-SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEE---EC---
T ss_pred             CCCcEEEEEECCCCCEEEEecCC-CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEE---EEEcC
Confidence            56799999999999999988776 59999998753    556788999999999999999999999999999   99996


Q ss_pred             CC----eeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCe----eeecCC-CCccEEEEEEcCCCCEEEEEe
Q psy11524        156 GR----QLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWS----HSLDKP-DTGSVYDLVWSNDATQIAGAC  225 (323)
Q Consensus       156 ~~----~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~~~~  225 (323)
                      ..    ....+..|...|.+++|+|++++|++++.| .|++||++...    ...+.. |...|.+++|+|++++|++++
T Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~  165 (377)
T 3dwl_C           86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC  165 (377)
T ss_dssp             ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence            43    466778899999999999999999999996 99999987543    445555 899999999999999999999


Q ss_pred             cCc-EEEEEcCC------------------CceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-
Q psy11524        226 ANV-IHIFDISS------------------SSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-  285 (323)
Q Consensus       226 ~d~-i~iwd~~~------------------~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-  285 (323)
                      .|+ |++||++.                  ++++..  + .|...|.+++|+|++    ..+++++.++.+++|++... 
T Consensus       166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~v~~~~~sp~~----~~l~~~~~d~~i~iwd~~~~~  238 (377)
T 3dwl_C          166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAE--Y-PSGGWVHAVGFSPSG----NALAYAGHDSSVTIAYPSAPE  238 (377)
T ss_dssp             SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEEC--C-CCSSSEEEEEECTTS----SCEEEEETTTEEC-CEECSTT
T ss_pred             CCCEEEEEEEEecccCCCccccccccccchhhhhhc--c-cCCceEEEEEECCCC----CEEEEEeCCCcEEEEECCCCC
Confidence            999 99999853                  344444  4 889999999999998    89999999999999998764 


Q ss_pred             -------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        286 -------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       286 -------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                             ....|...|.+++|+|+|++|++++.|+.+ +|+.
T Consensus       239 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~  279 (377)
T 3dwl_C          239 QPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQG  279 (377)
T ss_dssp             SCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred             CcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence                   234577899999999999999999877766 6654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=7.4e-34  Score=244.66  Aligned_cols=267  Identities=12%  Similarity=0.097  Sum_probs=209.5

Q ss_pred             eeEeeEeccCCcceeeeeecc---ccc-cccceeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEe
Q psy11524         46 TVINYPISPYISVLHSYAASH---SWP-QALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKW  118 (323)
Q Consensus        46 ~v~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~  118 (323)
                      .+....++|++..++....++   .|+ .+.+....+ .|...|++++|+|++++|++++.+ +.|++|+....  ...+
T Consensus        99 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-~~i~iwd~~~~~~~~~~  177 (420)
T 3vl1_A           99 YTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQD-MQLKIWSVKDGSNPRTL  177 (420)
T ss_dssp             EEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETT-SEEEEEETTTCCCCEEE
T ss_pred             ceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCC-CeEEEEeCCCCcCceEE
Confidence            344457889996655544443   355 233334444 599999999999999999998877 59999998754  6778


Q ss_pred             eccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeec---CC---------------------CceeEEE
Q psy11524        119 QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLT---HD---------------------HPISSLA  173 (323)
Q Consensus       119 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~---~~---------------------~~v~~~~  173 (323)
                      ..|...|.+++|+|++++|++++.|+.|+   +||++ ++.+..+..   +.                     ..+.+++
T Consensus       178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~---iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~  254 (420)
T 3vl1_A          178 IGHRATVTDIAIIDRGRNVLSASLDGTIR---LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLE  254 (420)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETTSCEE---EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTC
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCcEE---EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceE
Confidence            89999999999999999999999999999   99996 555555543   33                     3444455


Q ss_pred             EecCCCEEEEEeCC-eEEEEeCCCC-eee-ecCCCCccEEEEEEcCCCC-EEEEEecCc-EEEEEcCCCce-eeeecCCC
Q psy11524        174 WAPGGDMFAVGSYN-TLRLCDKVGW-SHS-LDKPDTGSVYDLVWSNDAT-QIAGACANV-IHIFDISSSSS-SNVTAPLS  247 (323)
Q Consensus       174 ~~p~~~~l~~~~~~-~i~i~d~~~~-~~~-~~~~~~~~v~~~~~~~~~~-~l~~~~~d~-i~iwd~~~~~~-~~~~~~~~  247 (323)
                      |+|++++|++++.+ .|++||++.. ... ....|...+.+++|+|+++ +|++++.|+ |++||+++++. +..  +..
T Consensus       255 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~--~~~  332 (420)
T 3vl1_A          255 FGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGE--FLI  332 (420)
T ss_dssp             SSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE--EEE
T ss_pred             EcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhh--hhc
Confidence            67899999999996 9999998754 333 4455788999999999998 999999999 99999998754 554  343


Q ss_pred             -CccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-------------cCCCCccceeEEEEeeCCC---eeEeee
Q psy11524        248 -HSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-------------LDKPDTGSVYDLVWSSDAT---QIAGAC  310 (323)
Q Consensus       248 -~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~s~~g~---~l~s~~  310 (323)
                       +...+.++.+ |++    +.+++++.++.+.+|++...             ....|...|.+++|+|+++   .|++++
T Consensus       333 ~~~~~v~~~~~-~~~----~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g  407 (420)
T 3vl1_A          333 NEGTPINNVYF-AAG----ALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVG  407 (420)
T ss_dssp             STTSCEEEEEE-ETT----EEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEE
T ss_pred             cCCCCceEEEe-CCC----CEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEc
Confidence             6778888865 465    78888888999999997652             2334678899999999999   788888


Q ss_pred             cCCeEEEEEeecC
Q psy11524        311 ANGSLLLGTIIQR  323 (323)
Q Consensus       311 ~dg~i~~~~l~~~  323 (323)
                      .+|.+.+|++.++
T Consensus       408 ~~g~~~~~~~~~~  420 (420)
T 3vl1_A          408 KNNFCALYNLSNP  420 (420)
T ss_dssp             TTTEEEEEESCC-
T ss_pred             CCceEEEEeccCC
Confidence            9999999998764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=7.8e-34  Score=237.78  Aligned_cols=259  Identities=9%  Similarity=0.022  Sum_probs=211.7

Q ss_pred             eecccceeEeeEeccCCcceeeeeecc---cccc-ccc----eeeecCCCCCEEEEEEcCCCC-eEEEEeeCCeEEEEeC
Q psy11524         40 IRRYDGTVINYPISPYISVLHSYAASH---SWPQ-ALS----LCRTLNVSPPVYSAAWSPDSN-KVLLTQAKSLVIKPLS  110 (323)
Q Consensus        40 ~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~-~~~----~~~~~~~~~~v~~~~~sp~~~-~l~~~~~~~~~v~~~~  110 (323)
                      ..+|.+.|.++.|+|++..++....++   .|+. ..+    ......|...|.+++|+|+++ +|++++.+ +.|++|+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~~wd   85 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ-GEILKVD   85 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT-SCEEEEC
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCC-CeEEEEE
Confidence            458999999999999996665444433   2542 122    333446899999999999999 89988766 6999999


Q ss_pred             C-CCc-eeEeec--cCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC----------CeeeEeecCCCceeEEEEec
Q psy11524        111 P-NNK-ATKWQA--HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG----------RQLYSSLTHDHPISSLAWAP  176 (323)
Q Consensus       111 ~-~~~-~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~----------~~~~~~~~~~~~v~~~~~~p  176 (323)
                      . ... ...+..  |...|.+++|+| +++|++++.|+.|+   +||++.          +.+..+. +...+.+++|+|
T Consensus        86 ~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~---iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~  160 (342)
T 1yfq_A           86 LIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIE---VIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS  160 (342)
T ss_dssp             SSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEE---EECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred             eccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEE---EEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence            8 665 667778  999999999999 99999999999999   999853          3344444 888999999999


Q ss_pred             CCCEEEEEeCC-eEEEEeCCC-Ce---eeecCCCCccEEEEEEcC-CCCEEEEEecCc-EEEEEcCCC------ceeeee
Q psy11524        177 GGDMFAVGSYN-TLRLCDKVG-WS---HSLDKPDTGSVYDLVWSN-DATQIAGACANV-IHIFDISSS------SSSNVT  243 (323)
Q Consensus       177 ~~~~l~~~~~~-~i~i~d~~~-~~---~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~-i~iwd~~~~------~~~~~~  243 (323)
                      ++  +++++.+ .|++||++. ..   ......+...+.+++|+| +++++++++.|+ |++||++..      +.... 
T Consensus       161 ~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~-  237 (342)
T 1yfq_A          161 SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA-  237 (342)
T ss_dssp             SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE-
T ss_pred             Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee-
Confidence            87  8888886 999999876 32   224456788999999999 999999999999 999999876      55555 


Q ss_pred             cCCCCc---------cceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCC-ccceeEEEEeeCCCeeEee
Q psy11524        244 APLSHS---------HEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPD-TGSVYDLVWSSDATQIAGA  309 (323)
Q Consensus       244 ~~~~~~---------~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~-~~~v~~~~~s~~g~~l~s~  309 (323)
                       +..|.         ..|.+++|+|++    ..|++++.++.+.+|++...    ....| ...|.+++  |++++|+++
T Consensus       238 -~~~~~~~~~~~~~~~~i~~~~~s~~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~  310 (342)
T 1yfq_A          238 -FRCHRLNLKDTNLAYPVNSIEFSPRH----KFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLA  310 (342)
T ss_dssp             -EECCCCCTTCCSSCCCEEEEEECTTT----CCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEE
T ss_pred             -eecccccccccccceeEEEEEEcCCC----CEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEE
Confidence             44554         499999999998    88999999999999998765    45566 89999999  999999999


Q ss_pred             ecCCe
Q psy11524        310 CANGS  314 (323)
Q Consensus       310 ~~dg~  314 (323)
                      +.||.
T Consensus       311 s~Dg~  315 (342)
T 1yfq_A          311 TSDDT  315 (342)
T ss_dssp             EECTH
T ss_pred             ecCCc
Confidence            99998

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=5.5e-34  Score=247.38  Aligned_cols=265  Identities=15%  Similarity=0.177  Sum_probs=202.6

Q ss_pred             cccceeEeeEeccCCcceeeeeecc---ccccc-cc-----------eeeec-CCC------------CCEEEEEEcCCC
Q psy11524         42 RYDGTVINYPISPYISVLHSYAASH---SWPQA-LS-----------LCRTL-NVS------------PPVYSAAWSPDS   93 (323)
Q Consensus        42 ~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~-~~-----------~~~~~-~~~------------~~v~~~~~sp~~   93 (323)
                      .+.+.|.++.|+|+|..++....++   .|+.. .+           +...+ .|.            ..|++++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            4678999999999996555444433   24311 11           12233 366            889999999998


Q ss_pred             --CeEEEEeeCCeEEEEeCCCCcee-----------------------------------------E-eeccCCCeEEEE
Q psy11524         94 --NKVLLTQAKSLVIKPLSPNNKAT-----------------------------------------K-WQAHDGLILKVA  129 (323)
Q Consensus        94 --~~l~~~~~~~~~v~~~~~~~~~~-----------------------------------------~-~~~~~~~v~~~~  129 (323)
                        ..|++++.+ +.|++|+......                                         . ..+|...|.+++
T Consensus       106 ~~~~l~s~s~d-~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          106 NAAQFLLSTND-KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             SSSEEEEEECS-SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CcceEEEeCCC-CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence              788888776 6999999764211                                         2 357999999999


Q ss_pred             ECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeE--------eecCCCceeEEEEecCC-CEEEEEeCC-eEEEEeCCCCe
Q psy11524        130 WCSSTDLILSGGEDCKYKASFVWDTD-GRQLYS--------SLTHDHPISSLAWAPGG-DMFAVGSYN-TLRLCDKVGWS  198 (323)
Q Consensus       130 ~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~--------~~~~~~~v~~~~~~p~~-~~l~~~~~~-~i~i~d~~~~~  198 (323)
                      |+|++++|+++ .|+.|+   +||++ ......        +..|...|.+++|+|++ ++|++++.| .|++||++...
T Consensus       185 ~~~~~~~l~s~-~d~~i~---iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  260 (447)
T 3dw8_B          185 INSDYETYLSA-DDLRIN---LWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA  260 (447)
T ss_dssp             ECTTSSEEEEE-CSSEEE---EEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred             EcCCCCEEEEe-CCCeEE---EEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence            99999999998 799999   99997 333322        45788999999999998 999999996 99999987543


Q ss_pred             -----eeecCCCCc------------cEEEEEEcCCCCEEEEEecCc-EEEEEcCC-CceeeeecCCCCccc--------
Q psy11524        199 -----HSLDKPDTG------------SVYDLVWSNDATQIAGACANV-IHIFDISS-SSSSNVTAPLSHSHE--------  251 (323)
Q Consensus       199 -----~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~-~~~~~~~~~~~~~~~--------  251 (323)
                           ...+..|..            .|.+++|+|+|++|++++. + |++||+++ ++++..  +..|...        
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~--~~~~~~~~~~l~~~~  337 (447)
T 3dw8_B          261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVET--YQVHEYLRSKLCSLY  337 (447)
T ss_dssp             SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCC--EESCGGGTTTHHHHH
T ss_pred             cccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccce--eeccccccccccccc
Confidence                 456666665            8999999999999999999 9 99999997 777776  4555432        


Q ss_pred             -------eEEEEEccCCCCccceEEEEeCCCCeEEEecccc---cC---------------------------------C
Q psy11524        252 -------ITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---LD---------------------------------K  288 (323)
Q Consensus       252 -------v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---~~---------------------------------~  288 (323)
                             +..++|+|++    ..|++++.++.+++|++...   ..                                 .
T Consensus       338 ~~~~i~~~~~~~~s~~~----~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (447)
T 3dw8_B          338 ENDCIFDKFECCWNGSD----SVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSL  413 (447)
T ss_dssp             HTSGGGCCCCEEECTTS----SEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGC
T ss_pred             cccccccceEEEECCCC----CEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccccccccc
Confidence                   3349999998    77888888888888887653   00                                 0


Q ss_pred             CCccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        289 PDTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       289 ~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      .+...|..++|+|++++||+++.++ +++|.
T Consensus       414 ~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~  443 (447)
T 3dw8_B          414 DFNKKILHTAWHPKENIIAVATTNN-LYIFQ  443 (447)
T ss_dssp             CTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred             ccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence            1245688999999999999998887 66664

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.7e-33  Score=255.10  Aligned_cols=231  Identities=16%  Similarity=0.189  Sum_probs=199.3

Q ss_pred             CCCCCEEEEEEcCCC-CeEEEEeeCCeEEEEeCCCCc-------eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeee
Q psy11524         79 NVSPPVYSAAWSPDS-NKVLLTQAKSLVIKPLSPNNK-------ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASF  150 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~-~~l~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~  150 (323)
                      .|.+.|++++|+|++ ++|++++.| +.|++|+....       ...+.+|...|.+++|+|++++|++++.|++|+   
T Consensus       380 ~H~~~V~~v~~~~~~~~~l~s~s~D-~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~---  455 (694)
T 3dm0_A          380 AHTDMVTAIATPIDNADIIVSASRD-KSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR---  455 (694)
T ss_dssp             CCSSCEEEEECCTTCCSEEEEEETT-SEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE---
T ss_pred             cCCceeEEEEecCCCCCEEEEEeCC-CcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE---
Confidence            499999999999976 577777666 69999987642       356789999999999999999999999999999   


Q ss_pred             EEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeee----cCCCCccEEEEEEcCCC--CEEE
Q psy11524        151 VWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSL----DKPDTGSVYDLVWSNDA--TQIA  222 (323)
Q Consensus       151 v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~----~~~~~~~v~~~~~~~~~--~~l~  222 (323)
                      +||+. +.....+.+|...|.+++|+|++++|++++.| +|++||..+.....    ..+|...|.+++|+|++  ..|+
T Consensus       456 vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  535 (694)
T 3dm0_A          456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV  535 (694)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred             EEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE
Confidence            99995 66778889999999999999999999999997 99999987654332    24588899999999986  5899


Q ss_pred             EEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEE
Q psy11524        223 GACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDL  297 (323)
Q Consensus       223 ~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~  297 (323)
                      +++.|+ |++||+++++....  +.+|...|++++|+|++    ..+++++.++.+++|++...    ... +...|.++
T Consensus       536 s~s~d~~v~vwd~~~~~~~~~--~~~h~~~v~~v~~spdg----~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~  608 (694)
T 3dm0_A          536 SASWDKTVKVWNLSNCKLRST--LAGHTGYVSTVAVSPDG----SLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHAL  608 (694)
T ss_dssp             EEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTS----SEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEE
T ss_pred             EEeCCCeEEEEECCCCcEEEE--EcCCCCCEEEEEEeCCC----CEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEE
Confidence            999999 99999999998887  78999999999999999    89999999999999998765    222 35679999


Q ss_pred             EEeeCCCeeEeeecCCeEEEEEee
Q psy11524        298 VWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       298 ~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +|+|++.+|++++ |+.|++|++.
T Consensus       609 ~~sp~~~~l~~~~-~~~i~iwd~~  631 (694)
T 3dm0_A          609 CFSPNRYWLCAAT-EHGIKIWDLE  631 (694)
T ss_dssp             EECSSSSEEEEEE-TTEEEEEETT
T ss_pred             EEcCCCcEEEEEc-CCCEEEEECC
Confidence            9999998777765 5669999974

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.2e-33  Score=240.64  Aligned_cols=235  Identities=12%  Similarity=0.067  Sum_probs=196.9

Q ss_pred             eeeec-CCCCCEEEEEEcCCC-CeEEEEeeCCeEEEEeCCCCc--eeEe--eccCCCeEEEEECC-CCCEEEEEcCCCce
Q psy11524         74 LCRTL-NVSPPVYSAAWSPDS-NKVLLTQAKSLVIKPLSPNNK--ATKW--QAHDGLILKVAWCS-STDLILSGGEDCKY  146 (323)
Q Consensus        74 ~~~~~-~~~~~v~~~~~sp~~-~~l~~~~~~~~~v~~~~~~~~--~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~d~~i  146 (323)
                      +.+.+ .|...|++++|+|++ ++|++++.+ +.|++|+....  ...+  .+|...|.+++|+| ++++|++++.|+.|
T Consensus        65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i  143 (383)
T 3ei3_B           65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKG-GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT  143 (383)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEEBT-SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred             eEEeccCCCCCEEEEEECCCCCCEEEEEcCC-CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence            33444 489999999999999 889888777 69999998765  3333  36999999999999 78999999999999


Q ss_pred             EeeeEEeCCCCeeeEeecCC---CceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCC-EE
Q psy11524        147 KASFVWDTDGRQLYSSLTHD---HPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDAT-QI  221 (323)
Q Consensus       147 ~~i~v~d~~~~~~~~~~~~~---~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~-~l  221 (323)
                      +   +||++++....+..+.   ..|.+++|+|++++|++++.+ .|++||+++.....+..|...|.+++|+|+++ +|
T Consensus       144 ~---iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  220 (383)
T 3ei3_B          144 T---LRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLM  220 (383)
T ss_dssp             E---EEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEE
T ss_pred             E---EEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEE
Confidence            9   9999987777776544   789999999999999999996 99999998878888888999999999999999 89


Q ss_pred             EEEecCc-EEEEEcCC----CceeeeecCCCCccceEEEEEcc-CCCCccceEEEEeCCCCeEEEeccccc----CC---
Q psy11524        222 AGACANV-IHIFDISS----SSSSNVTAPLSHSHEITQLAVNQ-TGSLQERHVAFIDKNRDLYLSMWSHSL----DK---  288 (323)
Q Consensus       222 ~~~~~d~-i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~p-~g~~~d~~l~~~~~~~~~~~~~~~~~~----~~---  288 (323)
                      ++++.|+ |++||+++    +..+..   .+|...|.+++|+| ++    ..+++.+.++.+.+|++....    ..   
T Consensus       221 ~s~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  293 (383)
T 3ei3_B          221 ATSSVDATVKLWDLRNIKDKNSYIAE---MPHEKPVNAAYFNPTDS----TKLLTTDQRNEIRVYSSYDWSKPDQIIIHP  293 (383)
T ss_dssp             EEEETTSEEEEEEGGGCCSTTCEEEE---EECSSCEEEEEECTTTS----CEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred             EEEeCCCEEEEEeCCCCCcccceEEE---ecCCCceEEEEEcCCCC----CEEEEEcCCCcEEEEECCCCcccccccccc
Confidence            9999999 99999997    555555   36889999999999 88    889999999999999987640    11   


Q ss_pred             ----CCc----------cceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        289 ----PDT----------GSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       289 ----~~~----------~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                          .|.          ..+..++|+|+|++  +++.||.|++|++.
T Consensus       294 ~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~  338 (383)
T 3ei3_B          294 HRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDAN  338 (383)
T ss_dssp             BCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETT
T ss_pred             ccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecC
Confidence                111          34455777788776  88899999999974

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-34  Score=244.35  Aligned_cols=249  Identities=12%  Similarity=0.063  Sum_probs=195.4

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeeccc---cccccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASHS---WPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK  114 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~  114 (323)
                      ..+++|...|.+++|+|+|       ..+.   |+........+.|...|.+++|||+|++||+++.+ |.+++|+..+.
T Consensus        46 ~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~d-g~V~iwd~~~~  117 (588)
T 2j04_A           46 KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNN-GNVSVFKDNKM  117 (588)
T ss_dssp             SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETT-SCEEEEETTEE
T ss_pred             ceecCCCccEEEEEECCCC-------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCC-CcEEEEeCCce
Confidence            3457999999999999999       2333   33443344455678999999999999999999877 59999997665


Q ss_pred             eeEeeccCC-----CeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCe--------eeEe----ecCCCceeEEEEecC
Q psy11524        115 ATKWQAHDG-----LILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQ--------LYSS----LTHDHPISSLAWAPG  177 (323)
Q Consensus       115 ~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~--------~~~~----~~~~~~v~~~~~~p~  177 (323)
                      ...+. |..     .+.+++|||||++||+|+.||+|+   +||+.++.        +..+    .+|...|.+++|+||
T Consensus       118 l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk---IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd  193 (588)
T 2j04_A          118 LTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ---FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED  193 (588)
T ss_dssp             EEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE---EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT
T ss_pred             eeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE---EEECCCCccccccceeeeeeecccccccccEEEEEEcCC
Confidence            55556 665     499999999999999999999999   99997553        4555    556789999999999


Q ss_pred             CCEEEEEeCC-eEEEEeCCCCee----eec-CCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCcc
Q psy11524        178 GDMFAVGSYN-TLRLCDKVGWSH----SLD-KPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSH  250 (323)
Q Consensus       178 ~~~l~~~~~~-~i~i~d~~~~~~----~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~  250 (323)
                      |  +++++.| .+++||+.+...    ..+ .+|...|.+++|+  |++|++++ ++ |++||+.+++....  ..+|..
T Consensus       194 g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~--~~gh~~  266 (588)
T 2j04_A          194 V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL--KTGSLE  266 (588)
T ss_dssp             E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE--ECSCCS
T ss_pred             c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE--EcCCCc
Confidence            9  6666766 999999986543    233 4688899999999  68899887 58 99999998877443  347999


Q ss_pred             ceEEEEE--ccCCCCccceEEEEeCCCCeEEEecccc---------------------------cCCCCccceeEEEEee
Q psy11524        251 EITQLAV--NQTGSLQERHVAFIDKNRDLYLSMWSHS---------------------------LDKPDTGSVYDLVWSS  301 (323)
Q Consensus       251 ~v~~~~~--~p~g~~~d~~l~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~v~~~~~s~  301 (323)
                      .+..++|  +|++    ..+++.+.+|. ++|.....                           .... ...|.+++|||
T Consensus       267 ~V~~va~~~s~d~----~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SP  340 (588)
T 2j04_A          267 NFHIIPLNHEKES----TILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSP  340 (588)
T ss_dssp             CCCEEEETTCSSC----EEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECT
T ss_pred             eEEEEEeeeCCCC----CEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECC
Confidence            9999999  9998    67777777776 66664211                           1112 45699999999


Q ss_pred             CCCeeEeeec
Q psy11524        302 DATQIAGACA  311 (323)
Q Consensus       302 ~g~~l~s~~~  311 (323)
                      ||+.+|+++.
T Consensus       341 dG~~lA~~~~  350 (588)
T 2j04_A          341 DGYSIAIVYD  350 (588)
T ss_dssp             TSSEEEEEEE
T ss_pred             CCCEEEEEEe
Confidence            9999998864

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.3e-34  Score=236.45  Aligned_cols=253  Identities=16%  Similarity=0.198  Sum_probs=189.6

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeecccccccccee----------eec-CCCCCEEEEEEcC--CCCeEEEEeeCCe
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLC----------RTL-NVSPPVYSAAWSP--DSNKVLLTQAKSL  104 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~~~~v~~~~~sp--~~~~l~~~~~~~~  104 (323)
                      ..+.+|.+.|.+++|+|+|+.    +++++.|++.++|          ..+ .|...|.+++|+|  ++++|++++.| +
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~----lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D-~   81 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTR----LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD-R   81 (316)
T ss_dssp             -------CCEEEEEECGGGCE----EEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT-S
T ss_pred             eecccccCeEEEeeEcCCCCE----EEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC-C
Confidence            346799999999999999954    4555545444443          223 4899999999986  48899998877 5


Q ss_pred             EEEEeCCCCc----eeEeeccCCCeEEEEECCC--CCEEEEEcCCCceEeeeEEeCCCC-e---eeEeecCCCceeEEEE
Q psy11524        105 VIKPLSPNNK----ATKWQAHDGLILKVAWCSS--TDLILSGGEDCKYKASFVWDTDGR-Q---LYSSLTHDHPISSLAW  174 (323)
Q Consensus       105 ~v~~~~~~~~----~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~i~v~d~~~~-~---~~~~~~~~~~v~~~~~  174 (323)
                      .|++||....    ...+.+|...|.+++|+|+  +.+|++++.|++|+   +||++.. .   ...+..|...+.+++|
T Consensus        82 ~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~---lwd~~~~~~~~~~~~~~~h~~~v~~~~~  158 (316)
T 3bg1_A           82 KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAIS---LLTYTGEGQWEVKKINNAHTIGCNAVSW  158 (316)
T ss_dssp             CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEE---EEEECSSSCEEECCBTTSSSSCBCCCEE
T ss_pred             EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEE---EEecCCCCCcceeeeeccccCCcceEEE
Confidence            9999998753    4456789999999999998  78999999999999   9999643 1   3445678889999999


Q ss_pred             ecC-----------------CCEEEEEeCC-eEEEEeCCCC----eeeecCCCCccEEEEEEcCCC----CEEEEEecCc
Q psy11524        175 APG-----------------GDMFAVGSYN-TLRLCDKVGW----SHSLDKPDTGSVYDLVWSNDA----TQIAGACANV  228 (323)
Q Consensus       175 ~p~-----------------~~~l~~~~~~-~i~i~d~~~~----~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~  228 (323)
                      +|+                 +++|++++.| .|++||++..    ....+.+|...|.+++|+|++    ++|++++.|+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~  238 (316)
T 3bg1_A          159 APAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG  238 (316)
T ss_dssp             CCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC
T ss_pred             ccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC
Confidence            997                 4689999987 9999998642    445677899999999999986    7899999999


Q ss_pred             -EEEEEcCCCc----eeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccccCCCCccceeEEEEeeCC
Q psy11524        229 -IHIFDISSSS----SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDA  303 (323)
Q Consensus       229 -i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  303 (323)
                       |++||+++..    ....  +..|...|.+++|+|++    ..|+++..++.+++|+...      .+...++.--.++
T Consensus       239 ~v~iw~~~~~~~~~~~~~~--~~~~~~~v~~v~~sp~g----~~las~~~D~~v~lw~~~~------~g~~~~~~~~~~~  306 (316)
T 3bg1_A          239 RVFIWTCDDASSNTWSPKL--LHKFNDVVWHVSWSITA----NILAVSGGDNKVTLWKESV------DGQWVCISDVNKG  306 (316)
T ss_dssp             EEEEEECSSTTCCCCBCCE--EEECSSCEEEEEECTTT----CCEEEEESSSCEEEEEECT------TSCEEEEEECC--
T ss_pred             eEEEEEccCccccchhhhh--hhcCCCcEEEEEEcCCC----CEEEEEcCCCeEEEEEECC------CCcEEEeeeccCC
Confidence             9999987631    1122  34578899999999999    8999999999999999864      3444555555555


Q ss_pred             CeeEeee
Q psy11524        304 TQIAGAC  310 (323)
Q Consensus       304 ~~l~s~~  310 (323)
                      +..++++
T Consensus       307 ~~~~~~~  313 (316)
T 3bg1_A          307 QGSVSAS  313 (316)
T ss_dssp             -------
T ss_pred             CCceeee
Confidence            5555443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=245.60  Aligned_cols=234  Identities=11%  Similarity=0.117  Sum_probs=190.5

Q ss_pred             cCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-------------eeEeeccC------------CCeEEEEECC
Q psy11524         78 LNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-------------ATKWQAHD------------GLILKVAWCS  132 (323)
Q Consensus        78 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-------------~~~~~~~~------------~~v~~~~~~~  132 (323)
                      +.+.+.|++++|+|+|++||+|+.+ +.|++|+....             ...+.+|.            ..|.+++|+|
T Consensus        25 ~~~~~~V~~v~~s~~g~~la~g~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~  103 (447)
T 3dw8_B           25 VAEADIISTVEFNHSGELLATGDKG-GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP  103 (447)
T ss_dssp             CCGGGSEEEEEECSSSSEEEEEETT-SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred             ccccCcEEEEEECCCCCEEEEEcCC-CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence            4578999999999999999998777 69999987642             44677898            8899999999


Q ss_pred             CC--CEEEEEcCCCceEeeeEEeCCCCee----------------------------------------eE-eecCCCce
Q psy11524        133 ST--DLILSGGEDCKYKASFVWDTDGRQL----------------------------------------YS-SLTHDHPI  169 (323)
Q Consensus       133 ~~--~~l~~~~~d~~i~~i~v~d~~~~~~----------------------------------------~~-~~~~~~~v  169 (323)
                      ++  .+|++++.|+.|+   +||+.....                                        .. ..+|...|
T Consensus       104 ~~~~~~l~s~s~d~~i~---iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  180 (447)
T 3dw8_B          104 QKNAAQFLLSTNDKTIK---LWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI  180 (447)
T ss_dssp             CCSSSEEEEEECSSCEE---EEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred             CCCcceEEEeCCCCeEE---EEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence            98  7999999999999   999853221                                        12 35688999


Q ss_pred             eEEEEecCCCEEEEEeCCeEEEEeCC-CC-eee-------ecCCCCccEEEEEEcCCC-CEEEEEecCc-EEEEEcCCCc
Q psy11524        170 SSLAWAPGGDMFAVGSYNTLRLCDKV-GW-SHS-------LDKPDTGSVYDLVWSNDA-TQIAGACANV-IHIFDISSSS  238 (323)
Q Consensus       170 ~~~~~~p~~~~l~~~~~~~i~i~d~~-~~-~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~-i~iwd~~~~~  238 (323)
                      .+++|+|++++|+++.++.|++||++ .. ...       .+..|...|.+++|+|++ ++|++++.|+ |++||+++++
T Consensus       181 ~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  260 (447)
T 3dw8_B          181 NSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA  260 (447)
T ss_dssp             CEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred             EEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence            99999999999999833499999988 32 222       245788999999999998 9999999999 9999999988


Q ss_pred             e----eeeecCCCCcc------------ceEEEEEccCCCCccceEEEEeCCCCeEEEeccc-c----cCCCCccc----
Q psy11524        239 S----SNVTAPLSHSH------------EITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH-S----LDKPDTGS----  293 (323)
Q Consensus       239 ~----~~~~~~~~~~~------------~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~-~----~~~~~~~~----  293 (323)
                      .    +..  +..|..            .|.+++|+|++    ..+++++. +.+.+|++.. .    ....|...    
T Consensus       261 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l  333 (447)
T 3dw8_B          261 LCDRHSKL--FEEPEDPSNRSFFSEIISSISDVKFSHSG----RYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKL  333 (447)
T ss_dssp             SSCTTCEE--ECCC-----CCHHHHHTTCEEEEEECTTS----SEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTH
T ss_pred             cccceeeE--eccCCCccccccccccCceEEEEEECCCC----CEEEEeeC-CeEEEEeCCCCccccceeeccccccccc
Confidence            6    555  566665            89999999998    78888888 9999999875 2    23334321    


Q ss_pred             -----------eeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        294 -----------VYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       294 -----------v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                                 +..++|+|++++|++++.||.|++|++..
T Consensus       334 ~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~  373 (447)
T 3dw8_B          334 CSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNT  373 (447)
T ss_dssp             HHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTT
T ss_pred             cccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCC
Confidence                       33499999999999999999999999753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3.7e-33  Score=241.12  Aligned_cols=241  Identities=15%  Similarity=0.214  Sum_probs=202.1

Q ss_pred             ceeeecCCCCCEEEEEEcCC-CCeEEEEeeCCeEEEEeCCCC------------ceeEeeccCCCeEEEEECCCCC-EEE
Q psy11524         73 SLCRTLNVSPPVYSAAWSPD-SNKVLLTQAKSLVIKPLSPNN------------KATKWQAHDGLILKVAWCSSTD-LIL  138 (323)
Q Consensus        73 ~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~~~~~v~~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~-~l~  138 (323)
                      +..+.+.|.+.|++++|+|+ +.+|++++.+ +.|++|+...            ....+..|...|.+++|+|++. +|+
T Consensus       120 ~~~~~~~h~~~v~~l~~~p~~~~~lat~~~d-g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  198 (430)
T 2xyi_A          120 EIEIKINHEGEVNRARYMPQNACVIATKTPS-SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL  198 (430)
T ss_dssp             EEEEEEEESSCCSEEEEETTEEEEEEEECSS-SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEE
T ss_pred             EEEEEEcCCCcEEEEEECCCCCcEEEEECCC-CcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEE
Confidence            34455679999999999998 5666666555 6999998764            2567789999999999999988 999


Q ss_pred             EEcCCCceEeeeEEeCCC-Ce-------eeEeecCCCceeEEEEec-CCCEEEEEeCC-eEEEEeCCCC----eeeecCC
Q psy11524        139 SGGEDCKYKASFVWDTDG-RQ-------LYSSLTHDHPISSLAWAP-GGDMFAVGSYN-TLRLCDKVGW----SHSLDKP  204 (323)
Q Consensus       139 ~~~~d~~i~~i~v~d~~~-~~-------~~~~~~~~~~v~~~~~~p-~~~~l~~~~~~-~i~i~d~~~~----~~~~~~~  204 (323)
                      +++.||.|+   +|++.. ..       ...+..|...|.+++|+| ++.+|++++.+ .|++||++..    .......
T Consensus       199 s~~~dg~i~---vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~  275 (430)
T 2xyi_A          199 SASDDHTIC---LWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA  275 (430)
T ss_dssp             EECTTSCEE---EEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred             EEeCCCeEE---EEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence            999999999   999964 11       345668899999999999 67888899885 9999998743    3445567


Q ss_pred             CCccEEEEEEcCCCC-EEEEEecCc-EEEEEcCC-CceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEe
Q psy11524        205 DTGSVYDLVWSNDAT-QIAGACANV-IHIFDISS-SSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSM  281 (323)
Q Consensus       205 ~~~~v~~~~~~~~~~-~l~~~~~d~-i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~  281 (323)
                      |...|++++|+|+++ +|++++.|+ |++||+++ ++++..  +..|...|.+++|+|+++   ..+++++.++.+.+|+
T Consensus       276 ~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~--~~~h~~~v~~i~~sp~~~---~~l~s~~~d~~i~iwd  350 (430)
T 2xyi_A          276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS--FESHKDEIFQVQWSPHNE---TILASSGTDRRLHVWD  350 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE--EECCSSCEEEEEECSSCT---TEEEEEETTSCCEEEE
T ss_pred             CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEE--eecCCCCEEEEEECCCCC---CEEEEEeCCCcEEEEe
Confidence            899999999999887 688999999 99999998 456666  677899999999999982   4688899999999999


Q ss_pred             ccc---------------c---cCCCCccceeEEEEeeCCC-eeEeeecCCeEEEEEeec
Q psy11524        282 WSH---------------S---LDKPDTGSVYDLVWSSDAT-QIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       282 ~~~---------------~---~~~~~~~~v~~~~~s~~g~-~l~s~~~dg~i~~~~l~~  322 (323)
                      +..               .   ....|...|.+++|+|+++ +|++++.||.|++|++.+
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          351 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             GGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             CCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            876               1   4456788999999999999 899999999999999853

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-34  Score=246.35  Aligned_cols=249  Identities=11%  Similarity=0.029  Sum_probs=197.1

Q ss_pred             cccceeEeeEeccCCcceeeeeeccccccccce---eeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCce-e
Q psy11524         42 RYDGTVINYPISPYISVLHSYAASHSWPQALSL---CRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKA-T  116 (323)
Q Consensus        42 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~-~  116 (323)
                      .-...|.+++|+|||    ..+++++.|.+.+-   .+.+ .|...|.+++|+|+|       .+ +.+.+|+..+.. .
T Consensus        13 ~~~~~v~sv~~SpDG----~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg-------~~-~~~~~~~~~~~~~~   80 (588)
T 2j04_A           13 EFEDWKNNLTWARDG----TLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLE-------FE-NKLDFELAQQNGLL   80 (588)
T ss_dssp             CCSSSSCCEEECTTS----CEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCC-------CC-CTTTTSCCCSSCSS
T ss_pred             HhhccEEEEEECCCC----CEEEEEcCCceeecccccceecCCCccEEEEEECCCC-------Cc-ceEEEEeCCCceEe
Confidence            345789999999999    67777777766642   2222 388999999999999       22 355555544332 2


Q ss_pred             EeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCC-----ceeEEEEecCCCEEEEEeCC-eEE
Q psy11524        117 KWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDH-----PISSLAWAPGGDMFAVGSYN-TLR  190 (323)
Q Consensus       117 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~-----~v~~~~~~p~~~~l~~~~~~-~i~  190 (323)
                      .+ .|...|.+++|+|||++||+++.||.|+   +||.++ .+..+. |..     .+.+++|||||++|++|+.| +|+
T Consensus        81 ~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~---iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk  154 (588)
T 2j04_A           81 NS-QPVCYPRVCKPSPIDDWMAVLSNNGNVS---VFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ  154 (588)
T ss_dssp             TT-SCSCCEEEEEECSSSSCEEEEETTSCEE---EEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             ec-CCCCcEEEEEECCCCCEEEEEeCCCcEE---EEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence            22 4588999999999999999999999999   999765 555556 554     49999999999999999996 999


Q ss_pred             EEeCCCCe--------eeec----CCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCcee---eeecC-CCCccceE
Q psy11524        191 LCDKVGWS--------HSLD----KPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSS---NVTAP-LSHSHEIT  253 (323)
Q Consensus       191 i~d~~~~~--------~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~---~~~~~-~~~~~~v~  253 (323)
                      +||+.+..        +..+    .+|..+|.+++|+|+|  +++++.|+ +++||+.+++..   .+  + ..|...|.
T Consensus       155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~t--L~~~h~~~V~  230 (588)
T 2j04_A          155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRM--IQNASRRKIT  230 (588)
T ss_dssp             EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEE--EECCCSSCCC
T ss_pred             EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceee--ecccccCcEE
Confidence            99988653        2343    6688899999999999  88888899 999999887743   23  3 46778999


Q ss_pred             EEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEE--eeCCCeeEeeecCCeEEEEEe
Q psy11524        254 QLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVW--SSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       254 ~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~--s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      +++|+  +    +.+++.. ++.+++|++...    ...+|...|..++|  +||+..|++++.||+ ++|.+
T Consensus       231 svaFs--g----~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~  295 (588)
T 2j04_A          231 DLKIV--D----YKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE  295 (588)
T ss_dssp             CEEEE--T----TEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred             EEEEE--C----CEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence            99999  4    5676665 577888887764    22268999999999  999999999999999 99975

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-33  Score=245.02  Aligned_cols=263  Identities=12%  Similarity=0.049  Sum_probs=202.5

Q ss_pred             EeccCCcceeeeeeccccccccceeeec-C-CCCCEEEEEEcC-CCCeEEEEeeCCeEEEEeCCCC---c----eeEeec
Q psy11524         51 PISPYISVLHSYAASHSWPQALSLCRTL-N-VSPPVYSAAWSP-DSNKVLLTQAKSLVIKPLSPNN---K----ATKWQA  120 (323)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~sp-~~~~l~~~~~~~~~v~~~~~~~---~----~~~~~~  120 (323)
                      .|+|++..++.   ...|+.+.++...+ . |.+.|++++|+| ++++|++++.+ +.|++|+...   .    ......
T Consensus        34 ~f~~~~~~~~~---~~~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~~  109 (437)
T 3gre_A           34 EFGPIQEIVRS---PNMGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQ-GVIKIWNLKEIIVGEVYSSSLTYD  109 (437)
T ss_dssp             GGCCCCCCCCC---CCGGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETT-SEEEEEEHHHHHTTCCCSCSEEEE
T ss_pred             hcCCccccccc---cccccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCC-ceEEEeECcccccCcccceeeecc
Confidence            46777754432   22588888888777 4 789999999999 99999999877 6999999754   2    122225


Q ss_pred             cCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC----CCeeeEeec------------CCCceeEEE--EecCCCEEE
Q psy11524        121 HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD----GRQLYSSLT------------HDHPISSLA--WAPGGDMFA  182 (323)
Q Consensus       121 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~----~~~~~~~~~------------~~~~v~~~~--~~p~~~~l~  182 (323)
                      |...|.+++|+|++++|++++.||.|+   +||++    ++.......            +...+.++.  ++|++.+++
T Consensus       110 h~~~v~~~~~~~~~~~l~s~s~dg~i~---vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  186 (437)
T 3gre_A          110 CSSTVTQITMIPNFDAFAVSSKDGQII---VLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLV  186 (437)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEE---EEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEE
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCEEE---EEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEE
Confidence            999999999999999999999999999   99983    433332221            345566666  557899999


Q ss_pred             EEeCC-eEEEEeCCCC-eeeecCC--CCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEE
Q psy11524        183 VGSYN-TLRLCDKVGW-SHSLDKP--DTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAV  257 (323)
Q Consensus       183 ~~~~~-~i~i~d~~~~-~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  257 (323)
                      +++.+ .|++||++.. ....+..  |...|.+++|+|++++|++++.|+ |++||+++++++..+. ..|..+|.+++|
T Consensus       187 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~  265 (437)
T 3gre_A          187 ALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS-FGDHAPITHVEV  265 (437)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB-CTTCEEEEEEEE
T ss_pred             EEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe-cCCCCceEEEEe
Confidence            99996 9999998754 5555555  788999999999999999999999 9999999999888731 267779999977


Q ss_pred             ccCCCCccceEEEEeCCCCeEEEecccc----------------------------cCCC--CccceeEEEEeeCCCeeE
Q psy11524        258 NQTGSLQERHVAFIDKNRDLYLSMWSHS----------------------------LDKP--DTGSVYDLVWSSDATQIA  307 (323)
Q Consensus       258 ~p~g~~~d~~l~~~~~~~~~~~~~~~~~----------------------------~~~~--~~~~v~~~~~s~~g~~l~  307 (323)
                      +|.-......+++++.++.+.+|++...                            ....  |...|.+++|+ ++++|+
T Consensus       266 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~  344 (437)
T 3gre_A          266 CQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILL  344 (437)
T ss_dssp             CTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEE
T ss_pred             ccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEE
Confidence            6642111156666777777777776532                            0112  67889999999 889999


Q ss_pred             eeecCCeEEEEEeec
Q psy11524        308 GACANGSLLLGTIIQ  322 (323)
Q Consensus       308 s~~~dg~i~~~~l~~  322 (323)
                      +++.||.|++|++.+
T Consensus       345 s~~~d~~i~~wd~~~  359 (437)
T 3gre_A          345 TDEATSSIVMFSLNE  359 (437)
T ss_dssp             EEGGGTEEEEEETTC
T ss_pred             ecCCCCeEEEEECCC
Confidence            999999999999743

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.9e-33  Score=237.79  Aligned_cols=239  Identities=15%  Similarity=0.213  Sum_probs=201.2

Q ss_pred             cceeeecCCCCCEEEEEEcCCCC-eEEEEeeCCeEEEEeCC----CCce--------eEeec----------cCCCeEEE
Q psy11524         72 LSLCRTLNVSPPVYSAAWSPDSN-KVLLTQAKSLVIKPLSP----NNKA--------TKWQA----------HDGLILKV  128 (323)
Q Consensus        72 ~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~~~~~v~~~~~----~~~~--------~~~~~----------~~~~v~~~  128 (323)
                      .+......|...|++++|+|+++ +|++++.+ +.|++|+.    ....        ..+..          |...|.++
T Consensus        36 ~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (425)
T 1r5m_A           36 VKILKEIVKLDNIVSSTWNPLDESILAYGEKN-SVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCL  114 (425)
T ss_dssp             CEECEEEEECSCCSEEEECSSCTTEEEEEETB-TEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEE
T ss_pred             hhheeeeeccCceEEEEECCCCCcEEEEecCC-ceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEE
Confidence            33444455789999999999999 99988766 69999998    5432        22222          57799999


Q ss_pred             EECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCee--------
Q psy11524        129 AWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSH--------  199 (323)
Q Consensus       129 ~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~--------  199 (323)
                      +|+|++++|++++.||.|+   +||.+++....+..|...|.+++|+|++++|++++.+ .|++||+.....        
T Consensus       115 ~~s~~~~~l~~~~~dg~i~---i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  191 (425)
T 1r5m_A          115 AWSHDGNSIVTGVENGELR---LWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKE  191 (425)
T ss_dssp             EECTTSSEEEEEETTSCEE---EEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-
T ss_pred             EEcCCCCEEEEEeCCCeEE---EEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccc
Confidence            9999999999999999999   9998889999999999999999999999999999986 999999864321        


Q ss_pred             -------------------------------------------------eecCCCCccEEEEEEcCCCCEEEEEecCc-E
Q psy11524        200 -------------------------------------------------SLDKPDTGSVYDLVWSNDATQIAGACANV-I  229 (323)
Q Consensus       200 -------------------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i  229 (323)
                                                                       ..+..|...+.+++|+|++++|++++.|+ |
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  271 (425)
T 1r5m_A          192 TGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTL  271 (425)
T ss_dssp             --------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             cCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEE
Confidence                                                             12235677899999999999999999999 9


Q ss_pred             EEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCe
Q psy11524        230 HIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQ  305 (323)
Q Consensus       230 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~  305 (323)
                      ++||+++++.+..  +..|...+.+++|+|++     .++++..++.+.+|++...    ....|...|.+++|+|++++
T Consensus       272 ~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~-----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~  344 (425)
T 1r5m_A          272 RIWHGGNGNSQNC--FYGHSQSIVSASWVGDD-----KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQK  344 (425)
T ss_dssp             EEECSSSBSCSEE--ECCCSSCEEEEEEETTT-----EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSE
T ss_pred             EEEECCCCccceE--ecCCCccEEEEEECCCC-----EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCE
Confidence            9999999988887  67889999999999984     7778888888888888664    34457889999999999999


Q ss_pred             eEeeecCCeEEEEEee
Q psy11524        306 IAGACANGSLLLGTII  321 (323)
Q Consensus       306 l~s~~~dg~i~~~~l~  321 (323)
                      |++++.||.|++|++.
T Consensus       345 l~~~~~dg~i~i~~~~  360 (425)
T 1r5m_A          345 YAVAFMDGQVNVYDLK  360 (425)
T ss_dssp             EEEEETTSCEEEEECH
T ss_pred             EEEEECCCeEEEEECC
Confidence            9999999999999974

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-32  Score=255.25  Aligned_cols=192  Identities=17%  Similarity=0.123  Sum_probs=154.0

Q ss_pred             EeecccceeEeeEeccCCcceeeeeecccccccccee--------eecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeC
Q psy11524         39 TIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLC--------RTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLS  110 (323)
Q Consensus        39 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~  110 (323)
                      ...+|.+.|.+++|+|++..+    ++|+.|++.++|        ..+.|...|.+++|+| |++|++++.+ +.|++||
T Consensus        12 ~~~gh~~~V~~lafspdg~~l----Asgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D-~~v~lWd   85 (902)
T 2oaj_A           12 NKYGMSSKPIAAAFDFTQNLL----AIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAK-DTVYVLS   85 (902)
T ss_dssp             EEEECSSCEEEEEEETTTTEE----EEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETT-CEEEEEE
T ss_pred             cccCCCCCcEEEEECCCCCEE----EEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECc-CeEEEEE
Confidence            345899999999999999544    445444444443        3456888999999999 8889988776 6999999


Q ss_pred             CCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeee------------EeecCCCceeEEEEec
Q psy11524        111 PNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLY------------SSLTHDHPISSLAWAP  176 (323)
Q Consensus       111 ~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~------------~~~~~~~~v~~~~~~p  176 (323)
                      ....  +..+ .|.+.|.+++|+|++++|++|+.||.|+   +||+++..+.            .+.+|..+|.+++|+|
T Consensus        86 ~~~~~~~~~~-~~~~~V~~v~~sp~g~~l~sgs~dg~V~---lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp  161 (902)
T 2oaj_A           86 LYSQKVLTTV-FVPGKITSIDTDASLDWMLIGLQNGSMI---VYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP  161 (902)
T ss_dssp             TTTCSEEEEE-ECSSCEEEEECCTTCSEEEEEETTSCEE---EEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred             CCCCcEEEEE-cCCCCEEEEEECCCCCEEEEEcCCCcEE---EEECCCCccccceeccccccccccccCCCCeEEEEEcc
Confidence            8765  4445 3778999999999999999999999999   9999765542            2355788999999999


Q ss_pred             C-CCEEEEEeCC-eEEEEeCCCCe-eeecCCC------------------CccEEEEEEcCCCCEEEEEecCc-EEEEEc
Q psy11524        177 G-GDMFAVGSYN-TLRLCDKVGWS-HSLDKPD------------------TGSVYDLVWSNDATQIAGACANV-IHIFDI  234 (323)
Q Consensus       177 ~-~~~l~~~~~~-~i~i~d~~~~~-~~~~~~~------------------~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~  234 (323)
                      + +..+++++.+ .| +||++... ...+..|                  ...|.+++|+|+|++|++++.|+ |++||+
T Consensus       162 ~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~  240 (902)
T 2oaj_A          162 RDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA  240 (902)
T ss_dssp             TEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred             CCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence            6 5678888886 89 99988653 3333333                  46799999999999999999999 999999


Q ss_pred             CCCceee
Q psy11524        235 SSSSSSN  241 (323)
Q Consensus       235 ~~~~~~~  241 (323)
                      ++++++.
T Consensus       241 ~~g~~~~  247 (902)
T 2oaj_A          241 NSGHMIM  247 (902)
T ss_dssp             TTCCEEE
T ss_pred             CCCcEEE
Confidence            9887654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.2e-32  Score=238.53  Aligned_cols=269  Identities=11%  Similarity=0.144  Sum_probs=214.5

Q ss_pred             eeeEeeccccee-EeeEeccCCcceeeeeecc---ccc-cccceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEe
Q psy11524         36 NHLTIRRYDGTV-INYPISPYISVLHSYAASH---SWP-QALSLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPL  109 (323)
Q Consensus        36 ~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~  109 (323)
                      ....+.+|...+ .++.+  ++..++....++   .|| .+.+....+. |...|.+++|+|++ .+++++.+ +.|++|
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~d-g~i~vw  188 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTD-RTVRVW  188 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETT-SCEEEE
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCC-CCEEEE
Confidence            446788998885 55555  453333333322   244 2333334443 99999999999988 78877766 699999


Q ss_pred             CCCCc--eeEeeccCCCeEEEEEC--CCCCEEEEEcCCCceEeeeEEeCCCCe------------------------eeE
Q psy11524        110 SPNNK--ATKWQAHDGLILKVAWC--SSTDLILSGGEDCKYKASFVWDTDGRQ------------------------LYS  161 (323)
Q Consensus       110 ~~~~~--~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~i~v~d~~~~~------------------------~~~  161 (323)
                      +....  ...+.+|...|.+++|+  ++++++++++.|+.|+   +||+....                        ...
T Consensus       189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~---vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (464)
T 3v7d_B          189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH---VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  265 (464)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEE---EEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred             ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEE---EeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence            98765  66788899999999998  5778999999999999   99995322                        445


Q ss_pred             eecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCc
Q psy11524        162 SLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSS  238 (323)
Q Consensus       162 ~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~  238 (323)
                      +.+|...+.++  +++++++++++.| .|++||++.. ....+.+|...+.+++|+|+++++++++.|+ |++||+++++
T Consensus       266 ~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~  343 (464)
T 3v7d_B          266 LRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE  343 (464)
T ss_dssp             ECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             ccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence            66777777776  5778999999996 9999998754 5567778999999999999999999999999 9999999999


Q ss_pred             eeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc---cCCCCccceeEEEEeeCCCeeEeeecCCeE
Q psy11524        239 SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---LDKPDTGSVYDLVWSSDATQIAGACANGSL  315 (323)
Q Consensus       239 ~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i  315 (323)
                      .+.+  +.+|...|.+++|++      ..+++++.++.+.+|++...   ....|...+..++|+|++++|++++ ||.|
T Consensus       344 ~~~~--~~~h~~~v~~~~~~~------~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i  414 (464)
T 3v7d_B          344 LMYT--LQGHTALVGLLRLSD------KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQF  414 (464)
T ss_dssp             EEEE--ECCCSSCEEEEEECS------SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEE
T ss_pred             EEEE--EeCCCCcEEEEEEcC------CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeE
Confidence            9988  788999999999984      57888888999999988764   1112466788899999999999998 9999


Q ss_pred             EEEEeec
Q psy11524        316 LLGTIIQ  322 (323)
Q Consensus       316 ~~~~l~~  322 (323)
                      ++|++.+
T Consensus       415 ~iwd~~~  421 (464)
T 3v7d_B          415 NIYNLRS  421 (464)
T ss_dssp             EEEETTT
T ss_pred             EEEECCC
Confidence            9999743

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.3e-32  Score=243.94  Aligned_cols=273  Identities=15%  Similarity=0.192  Sum_probs=215.1

Q ss_pred             eeeEeecccc---eeEeeEeccC-Ccceeeeeecc---ccc-cccceeeec-----CCCCCEEEEEEcCCCCeEEEEeeC
Q psy11524         36 NHLTIRRYDG---TVINYPISPY-ISVLHSYAASH---SWP-QALSLCRTL-----NVSPPVYSAAWSPDSNKVLLTQAK  102 (323)
Q Consensus        36 ~~~~~~~~~~---~v~~~~~~~~-~~~~~~~~~~~---~~~-~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~~~~~~  102 (323)
                      ....+.+|..   .|.++.|+|+ +..++....++   .|| .+.+....+     .|...|.+++|+ ++++|++++.+
T Consensus       195 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d  273 (615)
T 1pgu_A          195 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD  273 (615)
T ss_dssp             EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT
T ss_pred             eeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCC
Confidence            3456778998   9999999999 87666555444   366 445556666     789999999999 99999998777


Q ss_pred             CeEEEEeCCCCc--eeEeecc----CCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEe
Q psy11524        103 SLVIKPLSPNNK--ATKWQAH----DGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWA  175 (323)
Q Consensus       103 ~~~v~~~~~~~~--~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~  175 (323)
                       +.|++|+....  ...+..+    ...+.++.|+ +++++++++.|+.|+   +||+. ++.+..+..|...|.+++| 
T Consensus       274 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~---~~d~~~~~~~~~~~~~~~~v~~~~~-  347 (615)
T 1pgu_A          274 -ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLN---FYELGHDEVLKTISGHNKGITALTV-  347 (615)
T ss_dssp             -SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEE---EEETTEEEEEEEECCCSSCEEEEET-
T ss_pred             -CcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEE---EEECCCCcEEEEEeCCCCCEEEEEe-
Confidence             69999998765  4455544    4678888886 889999999999999   99986 4444445444444433333 


Q ss_pred             cC------------------------------------------------------------------------------
Q psy11524        176 PG------------------------------------------------------------------------------  177 (323)
Q Consensus       176 p~------------------------------------------------------------------------------  177 (323)
                      |+                                                                              
T Consensus       348 ~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  427 (615)
T 1pgu_A          348 NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDD  427 (615)
T ss_dssp             TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTS
T ss_pred             cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCC
Confidence            22                                                                              


Q ss_pred             ----------------------------CCEEEEEeC-C-eEEEEeCCCCee--eecCCCCccEEEEEEcCCCCEEEEEe
Q psy11524        178 ----------------------------GDMFAVGSY-N-TLRLCDKVGWSH--SLDKPDTGSVYDLVWSNDATQIAGAC  225 (323)
Q Consensus       178 ----------------------------~~~l~~~~~-~-~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~  225 (323)
                                                  ++++++++. + .|++||+.+...  .....|...|.+++|+|++++|++++
T Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  507 (615)
T 1pgu_A          428 DLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD  507 (615)
T ss_dssp             EEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcC
Confidence                                        334444444 4 566666554333  45567888999999999999999999


Q ss_pred             cCc-EEEEEcCCCceeeeecCCC-CccceEEEEEcc----------CCCCccceEEEEeCCCCeEEEecccc-----cCC
Q psy11524        226 ANV-IHIFDISSSSSSNVTAPLS-HSHEITQLAVNQ----------TGSLQERHVAFIDKNRDLYLSMWSHS-----LDK  288 (323)
Q Consensus       226 ~d~-i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~p----------~g~~~d~~l~~~~~~~~~~~~~~~~~-----~~~  288 (323)
                      .|+ |++||+.+++.+..  +.+ |...|++++|+|          ++    ..|++++.++.+++|++...     ...
T Consensus       508 ~dg~i~iw~~~~~~~~~~--~~~~h~~~v~~~~~sp~~~~~~~~~~~~----~~l~~~~~dg~i~iw~~~~~~~~~~~~~  581 (615)
T 1pgu_A          508 VMGKILLYDLQSREVKTS--RWAFRTSKINAISWKPAEKGANEEEIEE----DLVATGSLDTNIFIYSVKRPMKIIKALN  581 (615)
T ss_dssp             TTSCEEEEETTTTEEEEC--CSCCCSSCEEEEEECCCC------CCSC----CEEEEEETTSCEEEEESSCTTCCEEETT
T ss_pred             CCCeEEEeeCCCCcceeE--eecCCCCceeEEEEcCccccccccccCC----CEEEEEcCCCcEEEEECCCCceechhhh
Confidence            999 99999999999887  666 999999999999          88    89999999999999999874     456


Q ss_pred             CCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        289 PDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       289 ~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      .|...|.+++|+|+++ |++++.||.|++|++..
T Consensus       582 ~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          582 AHKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             SSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             cCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence            7899999999999999 99999999999999853

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.7e-33  Score=259.49  Aligned_cols=234  Identities=14%  Similarity=0.158  Sum_probs=205.6

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-  155 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-  155 (323)
                      .|.+.|.+++|+|++++|++++.+ +.|++|+....  ...+..|...|.+++|+|++++|++++.||.|+   +||+. 
T Consensus        11 ~h~~~v~~i~~sp~~~~la~~~~~-g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~---vw~~~~   86 (814)
T 3mkq_A           11 NRSDRVKGIDFHPTEPWVLTTLYS-GRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR---VFNYNT   86 (814)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETT-SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE---EEETTT
T ss_pred             cCCCceEEEEECCCCCEEEEEeCC-CEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEE---EEECCC
Confidence            489999999999999999998766 69999997665  667888999999999999999999999999999   99985 


Q ss_pred             CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC--eeeecCCCCccEEEEEEcC-CCCEEEEEecCc-EE
Q psy11524        156 GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW--SHSLDKPDTGSVYDLVWSN-DATQIAGACANV-IH  230 (323)
Q Consensus       156 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~-i~  230 (323)
                      ++.+..+..|...|.+++|+|++++|++++.+ .|++||+.+.  .......|...+.+++|+| +++.|++++.|+ |+
T Consensus        87 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~  166 (814)
T 3mkq_A           87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK  166 (814)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred             CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEE
Confidence            77778888999999999999999999999996 9999998743  4456777999999999999 889999999999 99


Q ss_pred             EEEcCCCceeeeecCCCCccceEEEEEcc--CCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCC
Q psy11524        231 IFDISSSSSSNVTAPLSHSHEITQLAVNQ--TGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDAT  304 (323)
Q Consensus       231 iwd~~~~~~~~~~~~~~~~~~v~~~~~~p--~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~  304 (323)
                      +||+.+++..... ...+...+..++|+|  ++    ..++++..++.+.+|+....    ....|...|.+++|+|+|+
T Consensus       167 vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~----~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  241 (814)
T 3mkq_A          167 VWSLGQSTPNFTL-TTGQERGVNYVDYYPLPDK----PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP  241 (814)
T ss_dssp             EEETTCSSCSEEE-ECCCTTCCCEEEECCSTTC----CEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred             EEECCCCcceeEE-ecCCCCCEEEEEEEECCCC----CEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence            9999988777663 234448899999999  77    78888888888888887654    3445788999999999999


Q ss_pred             eeEeeecCCeEEEEEee
Q psy11524        305 QIAGACANGSLLLGTII  321 (323)
Q Consensus       305 ~l~s~~~dg~i~~~~l~  321 (323)
                      +|++++.||.|++|++.
T Consensus       242 ~l~~~~~dg~v~vwd~~  258 (814)
T 3mkq_A          242 IIISGSEDGTLKIWNSS  258 (814)
T ss_dssp             EEEEEETTSCEEEEETT
T ss_pred             EEEEEeCCCeEEEEECC
Confidence            99999999999999974

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-33  Score=258.58  Aligned_cols=233  Identities=15%  Similarity=0.245  Sum_probs=203.4

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc----eeEeeccCCCeEEEEECCC--CCEEEEEcCCCceEeeeEE
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK----ATKWQAHDGLILKVAWCSS--TDLILSGGEDCKYKASFVW  152 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~i~v~  152 (323)
                      .|.+.|++++|+|++++|++++.+ |.|++|+..+.    ...+.+|.+.|.+++|+|+  +++|++++.||.|+   +|
T Consensus         7 gH~~~V~~l~~s~dg~~latg~~d-g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~---vw   82 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCSSD-KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL---IW   82 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEETT-TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE---EE
T ss_pred             cCcceeEEEEECCCCCeEEEEECC-CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE---EE
Confidence            489999999999999999998777 69999997632    5667899999999999988  99999999999999   99


Q ss_pred             eCCCC---eeeEeecCCCceeEEEEecC--CCEEEEEeCC-eEEEEeCCCC---eeeecCCCCccEEEEEEcC-------
Q psy11524        153 DTDGR---QLYSSLTHDHPISSLAWAPG--GDMFAVGSYN-TLRLCDKVGW---SHSLDKPDTGSVYDLVWSN-------  216 (323)
Q Consensus       153 d~~~~---~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~~-~i~i~d~~~~---~~~~~~~~~~~v~~~~~~~-------  216 (323)
                      |+.+.   ....+..|...|.+++|+|+  ++.+++++.| .|++||++..   .......|...|.+++|+|       
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~  162 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence            99644   56677889999999999999  9999999996 9999998754   3345567899999999999       


Q ss_pred             ------CCCEEEEEecCc-EEEEEcCCCc----eeeeecCCCCccceEEEEEccC---CCCccceEEEEeCCCCeEEEec
Q psy11524        217 ------DATQIAGACANV-IHIFDISSSS----SSNVTAPLSHSHEITQLAVNQT---GSLQERHVAFIDKNRDLYLSMW  282 (323)
Q Consensus       217 ------~~~~l~~~~~d~-i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~p~---g~~~d~~l~~~~~~~~~~~~~~  282 (323)
                            ++.++++++.|+ |++||++++.    ....  +.+|...|.+++|+|+   +    ..+++++.++.+.+|++
T Consensus       163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--~~~h~~~V~~l~~sp~~~~~----~~l~s~s~Dg~I~iwd~  236 (753)
T 3jro_A          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST--LEGHSDWVRDVAWSPTVLLR----SYLASVSQDRTCIIWTQ  236 (753)
T ss_dssp             ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEE--ECCCSSCEEEEEECCCCSSS----EEEEEEESSSCEEEEEE
T ss_pred             ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeee--ecCCCCcEEEEEeccCCCCC----CEEEEEecCCEEEEecC
Confidence                  589999999999 9999998873    3444  6789999999999999   7    89999999999999998


Q ss_pred             ccc---------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        283 SHS---------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       283 ~~~---------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      ...         ....|...|.+++|+|+|++|++++.||.|++|++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             CCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence            763         223467899999999999999999999999999975

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.5e-32  Score=235.41  Aligned_cols=233  Identities=14%  Similarity=0.216  Sum_probs=192.5

Q ss_pred             CCCCCEEEEEEcC-CCCeEEEEeeCCeEEEEeCCCCc---------eeEeeccCCCeEEEEECCCC-CEEEEEcCCCceE
Q psy11524         79 NVSPPVYSAAWSP-DSNKVLLTQAKSLVIKPLSPNNK---------ATKWQAHDGLILKVAWCSST-DLILSGGEDCKYK  147 (323)
Q Consensus        79 ~~~~~v~~~~~sp-~~~~l~~~~~~~~~v~~~~~~~~---------~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~  147 (323)
                      .|...|++++|+| ++++|++++.+ +.|++|+....         ...+.+|...|.+++|+|++ ++|++++.|+.|+
T Consensus        79 ~h~~~V~~~~~~p~~~~~l~s~s~d-g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~  157 (402)
T 2aq5_A           79 GHTAPVLDIAWCPHNDNVIASGSED-CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVIL  157 (402)
T ss_dssp             CCSSCEEEEEECTTCTTEEEEEETT-SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEE
T ss_pred             cCCCCEEEEEeCCCCCCEEEEEeCC-CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEE
Confidence            4899999999999 89999988777 69999997653         56788999999999999998 6999999999999


Q ss_pred             eeeEEeCC-CCeeeEe--ecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-eeeec-CCCCcc-EEEEEEcCCCCE
Q psy11524        148 ASFVWDTD-GRQLYSS--LTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-SHSLD-KPDTGS-VYDLVWSNDATQ  220 (323)
Q Consensus       148 ~i~v~d~~-~~~~~~~--~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~-~~~~~~-v~~~~~~~~~~~  220 (323)
                         +||++ ++.+..+  ..|...|.+++|+|++++|++++.| .|++||++.. ....+ ..|.+. +.+++|+|++++
T Consensus       158 ---iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (402)
T 2aq5_A          158 ---VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKI  234 (402)
T ss_dssp             ---EEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEE
T ss_pred             ---EEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcE
Confidence               99996 5666677  6799999999999999999999996 9999998865 44444 567665 899999999999


Q ss_pred             EEEE---ecCc-EEEEEcCCCce-eeeecCCCCccceEEEEEccCCCCccceEEE-EeCCCCeEEEeccccc-----CC-
Q psy11524        221 IAGA---CANV-IHIFDISSSSS-SNVTAPLSHSHEITQLAVNQTGSLQERHVAF-IDKNRDLYLSMWSHSL-----DK-  288 (323)
Q Consensus       221 l~~~---~~d~-i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~-~~~~~~~~~~~~~~~~-----~~-  288 (323)
                      |+++   +.|+ |++||+++++. +... ...+...+..++|+|++    ..+++ +..++.+.+|++....     .. 
T Consensus       235 l~~g~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~----~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~  309 (402)
T 2aq5_A          235 LTTGFSRMSERQVALWDTKHLEEPLSLQ-ELDTSSGVLLPFFDPDT----NIVYLCGKGDSSIRYFEITSEAPFLHYLSM  309 (402)
T ss_dssp             EEEEECTTCCEEEEEEETTBCSSCSEEE-ECCCCSSCEEEEEETTT----TEEEEEETTCSCEEEEEECSSTTCEEEEEE
T ss_pred             EEEeccCCCCceEEEEcCccccCCceEE-eccCCCceeEEEEcCCC----CEEEEEEcCCCeEEEEEecCCCcceEeecc
Confidence            9999   6889 99999998764 3221 23567789999999998    67765 4468899999987641     11 


Q ss_pred             -CCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        289 -PDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       289 -~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                       .|...|.+++|+|++.++++  .++.+++|++.+
T Consensus       310 ~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~  342 (402)
T 2aq5_A          310 FSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHE  342 (402)
T ss_dssp             ECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred             cccCCcccceEEeccccccee--cceeEEEEEcCC
Confidence             14588999999999998875  466999999854

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=9.7e-33  Score=232.34  Aligned_cols=233  Identities=14%  Similarity=0.180  Sum_probs=195.1

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeC---CeEEEEeCCCCc-e--eEeeccCCCeEEEEECCC---CCEEEEEcCCCceEee
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAK---SLVIKPLSPNNK-A--TKWQAHDGLILKVAWCSS---TDLILSGGEDCKYKAS  149 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~---~~~v~~~~~~~~-~--~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~i  149 (323)
                      .|...|.+++|+|+++.+++++..   ++.|++|+.... .  .....|...|.+++|+|+   +++|++++.||.|+  
T Consensus        16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~--   93 (357)
T 3i2n_A           16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH--   93 (357)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEE--
T ss_pred             CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEE--
Confidence            399999999999999877766543   589999998765 2  223478999999999998   69999999999999  


Q ss_pred             eEEeCC-CC-eeeEeecCCCceeEEEE------ecCCCEEEEEeCC-eEEEEeCCCC--eeeecCCCCc----cEEEEE-
Q psy11524        150 FVWDTD-GR-QLYSSLTHDHPISSLAW------APGGDMFAVGSYN-TLRLCDKVGW--SHSLDKPDTG----SVYDLV-  213 (323)
Q Consensus       150 ~v~d~~-~~-~~~~~~~~~~~v~~~~~------~p~~~~l~~~~~~-~i~i~d~~~~--~~~~~~~~~~----~v~~~~-  213 (323)
                       +||+. ++ ....+..|...|.+++|      +|++++|++++.+ .|++||++..  ....+..+.+    .+.+++ 
T Consensus        94 -iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  172 (357)
T 3i2n_A           94 -IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAF  172 (357)
T ss_dssp             -EECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEE
T ss_pred             -EEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEE
Confidence             99996 44 67888899999999955      6789999999996 9999998753  3444444433    788888 


Q ss_pred             ---EcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEcc---CCCCccceEEEEeCCCCeEEEecccc-
Q psy11524        214 ---WSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQ---TGSLQERHVAFIDKNRDLYLSMWSHS-  285 (323)
Q Consensus       214 ---~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p---~g~~~d~~l~~~~~~~~~~~~~~~~~-  285 (323)
                         |+|++++|++++.|+ |++||+++++....   ..+...+.+++|+|   ++    ..++++..++.+.+|++... 
T Consensus       173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~v~~~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~  245 (357)
T 3i2n_A          173 GNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE---TNIKNGVCSLEFDRKDISM----NKLVATSLEGKFHVFDMRTQH  245 (357)
T ss_dssp             ECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE---EECSSCEEEEEESCSSSSC----CEEEEEESTTEEEEEEEEEEE
T ss_pred             EeccCCCCCEEEEEccCCeEEEEECccCceeee---cCCCCceEEEEcCCCCCCC----CEEEEECCCCeEEEEeCcCCC
Confidence               788999999999999 99999999887654   56788999999999   77    88999999999999998765 


Q ss_pred             ---cC-----CCCccceeEEEEeeCCC-eeEeeecCCeEEEEEee
Q psy11524        286 ---LD-----KPDTGSVYDLVWSSDAT-QIAGACANGSLLLGTII  321 (323)
Q Consensus       286 ---~~-----~~~~~~v~~~~~s~~g~-~l~s~~~dg~i~~~~l~  321 (323)
                         ..     ..|...|.+++|+|+++ +|++++.||.|++|++.
T Consensus       246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  290 (357)
T 3i2n_A          246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE  290 (357)
T ss_dssp             TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred             cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence               11     26789999999999998 89999999999999985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.5e-33  Score=233.13  Aligned_cols=233  Identities=10%  Similarity=0.059  Sum_probs=196.8

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-----eeEeeccCCCeEEEEECCCCC-EEEEEcCCCceEeeeEE
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-----ATKWQAHDGLILKVAWCSSTD-LILSGGEDCKYKASFVW  152 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~i~v~  152 (323)
                      .|.+.|++++|+|++++|++++.+ +.|++|+....     ...+..|...|.+++|+|+++ +|++++.||.|+   +|
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d-~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~---~w   84 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWD-GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL---KV   84 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETT-SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE---EE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCC-CeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE---EE
Confidence            489999999999999999998777 59999987543     455678999999999999999 999999999999   99


Q ss_pred             eC-CCCeeeEeec--CCCceeEEEEecCCCEEEEEeCC-eEEEEeCCC---------CeeeecCCCCccEEEEEEcCCCC
Q psy11524        153 DT-DGRQLYSSLT--HDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVG---------WSHSLDKPDTGSVYDLVWSNDAT  219 (323)
Q Consensus       153 d~-~~~~~~~~~~--~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~---------~~~~~~~~~~~~v~~~~~~~~~~  219 (323)
                      |+ +......+..  |...|.+++|+| +.++++++.+ .|++||++.         ........|...+.+++|+|++ 
T Consensus        85 d~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-  162 (342)
T 1yfq_A           85 DLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-  162 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-
T ss_pred             EeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc-
Confidence            99 8878888888  999999999999 9999999996 999999764         3322223388899999999987 


Q ss_pred             EEEEEecCc-EEEEEcCC-CceeeeecCCCCccceEEEEEcc-CCCCccceEEEEeCCCCeEEEecccc----------c
Q psy11524        220 QIAGACANV-IHIFDISS-SSSSNVTAPLSHSHEITQLAVNQ-TGSLQERHVAFIDKNRDLYLSMWSHS----------L  286 (323)
Q Consensus       220 ~l~~~~~d~-i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~p-~g~~~d~~l~~~~~~~~~~~~~~~~~----------~  286 (323)
                       +++++.++ |++||+++ +..........+...+.+++|+| ++    ..+++++.++.+.+|++...          .
T Consensus       163 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~----~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~  237 (342)
T 1yfq_A          163 -LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ----EGYACSSIDGRVAVEFFDDQGDDYNSSKRFA  237 (342)
T ss_dssp             -EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG----CEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred             -EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCC----CEEEEEecCCcEEEEEEcCCCccccccccee
Confidence             99999999 99999998 55322211456788999999999 98    78999999999999887542          2


Q ss_pred             CCCCc---------cceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        287 DKPDT---------GSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       287 ~~~~~---------~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      ...|.         ..|.+++|+|++++|++++.||.|++|++.+
T Consensus       238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~  282 (342)
T 1yfq_A          238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc
Confidence            22343         3999999999999999999999999999753

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-34  Score=252.82  Aligned_cols=240  Identities=12%  Similarity=0.085  Sum_probs=187.7

Q ss_pred             ceeeecCCCCCEEEEEEcCCC---------CeEEEEee------------------CCeEEEEeCCCCc-e-----eEee
Q psy11524         73 SLCRTLNVSPPVYSAAWSPDS---------NKVLLTQA------------------KSLVIKPLSPNNK-A-----TKWQ  119 (323)
Q Consensus        73 ~~~~~~~~~~~v~~~~~sp~~---------~~l~~~~~------------------~~~~v~~~~~~~~-~-----~~~~  119 (323)
                      +....+.+.+.|.+|+|+|++         ++||+++.                  .++.|++|+.... .     ..+.
T Consensus       125 r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~  204 (524)
T 2j04_B          125 RRGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIV  204 (524)
T ss_dssp             SCEEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEE
T ss_pred             cceEEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEE
Confidence            333445567777777777765         56666542                  2368999987544 1     2356


Q ss_pred             ccCCCeEEEEECCC------CCEEEEEcCCCceEeeeEEeCCCCe------------eeEeecCCCceeEEEEecCCCEE
Q psy11524        120 AHDGLILKVAWCSS------TDLILSGGEDCKYKASFVWDTDGRQ------------LYSSLTHDHPISSLAWAPGGDMF  181 (323)
Q Consensus       120 ~~~~~v~~~~~~~~------~~~l~~~~~d~~i~~i~v~d~~~~~------------~~~~~~~~~~v~~~~~~p~~~~l  181 (323)
                      .|.+.|.+++|+|+      +.+||+++.||+|+   +||+....            ...+.+|...|.+++|+|++ .|
T Consensus       205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgtvr---lWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~l  280 (524)
T 2j04_B          205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTIN---FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TV  280 (524)
T ss_dssp             ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEE---EEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EE
T ss_pred             ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEE---EEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eE
Confidence            67889999999997      57999999999999   99995321            23567788999999999864 79


Q ss_pred             EEEeCC-eEEEEeCCCC--eeeecCCCCccEEEE--EEcCCC-CEEEEEecCc-EEEEEcCCCceeeeecCCCCc--cce
Q psy11524        182 AVGSYN-TLRLCDKVGW--SHSLDKPDTGSVYDL--VWSNDA-TQIAGACANV-IHIFDISSSSSSNVTAPLSHS--HEI  252 (323)
Q Consensus       182 ~~~~~~-~i~i~d~~~~--~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~--~~v  252 (323)
                      ++|+.| +|++||+++.  ....+..|...|.++  +|+|+| .+|++++.|+ |+|||+++++....  +.+|.  ..+
T Consensus       281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~--~~~~~~~~~v  358 (524)
T 2j04_B          281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKT--TVSRFRGSNL  358 (524)
T ss_dssp             EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCE--EEEECSCCSC
T ss_pred             EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccc--cccccccCcc
Confidence            999996 9999999743  334567899999999  578888 8999999999 99999998877665  33443  357


Q ss_pred             EEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        253 TQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       253 ~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      .+++|+|++    ..++..+.++.+++|++...    ....|...|++++|||+|++|++|+.||+|++|++..
T Consensus       359 ~~v~fsp~~----~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          359 VPVVYCPQI----YSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             CCEEEETTT----TEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             cceEeCCCc----CeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence            899999998    67888888888999988764    2345889999999999999999999999999998643

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=7.3e-32  Score=223.45  Aligned_cols=261  Identities=16%  Similarity=0.243  Sum_probs=208.1

Q ss_pred             eEeeEeccCCcceeeeeecc---ccc-cccceeeec---CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeE
Q psy11524         47 VINYPISPYISVLHSYAASH---SWP-QALSLCRTL---NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATK  117 (323)
Q Consensus        47 v~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~  117 (323)
                      +..++||+++ .|+..+ ++   .|| .+.++.+.+   .|...|++++|+|++++|++|+.+ +.|++|+....  +..
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D-g~v~iw~~~~~~~~~~  104 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-AEVQLWDVQQQKRLRN  104 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT-SEEEEEETTTTEEEEE
T ss_pred             ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECC-CcEEEeecCCceeEEE
Confidence            4568899886 343322 22   476 344444444   378899999999999999999877 59999998776  667


Q ss_pred             eeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC--CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeC
Q psy11524        118 WQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD--GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDK  194 (323)
Q Consensus       118 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~  194 (323)
                      +..|...+.++.+  ++..+++++.++.++   +|+..  ...+..+.+|...+..+.++++++++++++.| .|++||+
T Consensus       105 ~~~h~~~~~~~~~--~~~~l~s~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  179 (318)
T 4ggc_A          105 MTSHSARVGSLSW--NSYILSSGSRSGHIH---HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS  179 (318)
T ss_dssp             EECCSSCEEEEEE--ETTEEEEEETTSEEE---EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred             ecCccceEEEeec--CCCEEEEEecCCceE---eeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEEC
Confidence            8889988876655  567999999999999   99985  45667788899999999999999999999996 9999998


Q ss_pred             CCC-----eeeecCCCCccEEEEEEcCCCCEE---EEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCcc
Q psy11524        195 VGW-----SHSLDKPDTGSVYDLVWSNDATQI---AGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQE  265 (323)
Q Consensus       195 ~~~-----~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d  265 (323)
                      +..     .......+.+.+..++++|++..+   ++++.++ |++||.+.......   ..+...+..+.|+|++    
T Consensus       180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~---~~~~~~v~~~~~~~~~----  252 (318)
T 4ggc_A          180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA---VDAHSQVCSILWSPHY----  252 (318)
T ss_dssp             SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE---EECSSCEEEEEEETTT----
T ss_pred             CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc---ccceeeeeeeeecccc----
Confidence            743     223455677889999999976543   3455677 99999998887765   4566789999999998    


Q ss_pred             ceEEEEe--CCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        266 RHVAFID--KNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       266 ~~l~~~~--~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      +.+.+..  .++.+++|++...    .+.+|.+.|++++|+|+|++|++|+.||+|++|++.+
T Consensus       253 ~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          253 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             cceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            5555543  6788888888765    5567899999999999999999999999999999865

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.9e-32  Score=245.63  Aligned_cols=271  Identities=13%  Similarity=0.180  Sum_probs=213.1

Q ss_pred             eeeEeecccce-eEeeEecc--CCcceeeeeecc---cccc---------ccceeeecC-CCCCEEEEEEcCCCCeEEEE
Q psy11524         36 NHLTIRRYDGT-VINYPISP--YISVLHSYAASH---SWPQ---------ALSLCRTLN-VSPPVYSAAWSPDSNKVLLT   99 (323)
Q Consensus        36 ~~~~~~~~~~~-v~~~~~~~--~~~~~~~~~~~~---~~~~---------~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~   99 (323)
                      ....+.+|... |.++.|+|  +++.++....++   .|+.         ..++...+. |...|.+++|+|++++|+++
T Consensus        55 ~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  134 (615)
T 1pgu_A           55 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV  134 (615)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             cceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEe
Confidence            44678899999 99999999  997665544443   3553         123333343 89999999999999999998


Q ss_pred             eeCC---eEEEEeCCCCceeEeeccCCCeEEEEECCCCC-EEEEEcCCCceEeeeEEeCC-CCeeeEeecCCC---ceeE
Q psy11524        100 QAKS---LVIKPLSPNNKATKWQAHDGLILKVAWCSSTD-LILSGGEDCKYKASFVWDTD-GRQLYSSLTHDH---PISS  171 (323)
Q Consensus       100 ~~~~---~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~---~v~~  171 (323)
                      +.+.   +.|++|+.......+..|...|.+++|+|+++ .+++++.|+.|+   +||+. ++.+..+..|..   .|.+
T Consensus       135 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~---vwd~~~~~~~~~~~~~~~~~~~v~~  211 (615)
T 1pgu_A          135 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVV---FYQGPPFKFSASDRTHHKQGSFVRD  211 (615)
T ss_dssp             ECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEE---EEETTTBEEEEEECSSSCTTCCEEE
T ss_pred             ccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEE---EEeCCCcceeeeecccCCCCceEEE
Confidence            8663   79999997766888899999999999999998 899999999999   99996 566677888888   9999


Q ss_pred             EEEecC-CCEEEEEeCC-eEEEEeCCCC-eeeec-C---CCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeee
Q psy11524        172 LAWAPG-GDMFAVGSYN-TLRLCDKVGW-SHSLD-K---PDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVT  243 (323)
Q Consensus       172 ~~~~p~-~~~l~~~~~~-~i~i~d~~~~-~~~~~-~---~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~  243 (323)
                      ++|+|+ +++|++++.+ .|++||++.. ....+ .   .|...|.+++|+ ++++|++++.|+ |++||+++++.+..+
T Consensus       212 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~  290 (615)
T 1pgu_A          212 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKW  290 (615)
T ss_dssp             EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence            999999 9999999986 9999998754 44455 4   799999999999 999999999999 999999999888773


Q ss_pred             cCC--CCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEE
Q psy11524        244 APL--SHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLL  317 (323)
Q Consensus       244 ~~~--~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~  317 (323)
                      ...  .....+.++.|. ++    ..+++++.++.+.+|++...    ....|...|.+++| |+   |++++.||.|++
T Consensus       291 ~~~~~~~~~~~~~~~~~-~~----~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~  361 (615)
T 1pgu_A          291 TLDKQQLGNQQVGVVAT-GN----GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIME  361 (615)
T ss_dssp             ECCTTCGGGCEEEEEEE-ET----TEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEE
T ss_pred             cCCCCcccCceeEEEeC-CC----CeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEE
Confidence            222  124677888886 65    78888888999999887653    33445566666666 54   444444444444


Q ss_pred             EE
Q psy11524        318 GT  319 (323)
Q Consensus       318 ~~  319 (323)
                      |+
T Consensus       362 w~  363 (615)
T 1pgu_A          362 WS  363 (615)
T ss_dssp             TT
T ss_pred             EE
Confidence            43

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=8.7e-32  Score=225.08  Aligned_cols=240  Identities=17%  Similarity=0.217  Sum_probs=200.4

Q ss_pred             cccceeeecC-CCCCEEEEEEcCC-CCeEEEEeeCCeEEEEeCCCCc-------eeEeeccCCCeEEEEECCCCCEEEEE
Q psy11524         70 QALSLCRTLN-VSPPVYSAAWSPD-SNKVLLTQAKSLVIKPLSPNNK-------ATKWQAHDGLILKVAWCSSTDLILSG  140 (323)
Q Consensus        70 ~~~~~~~~~~-~~~~v~~~~~sp~-~~~l~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~  140 (323)
                      .+..+..+|+ |.+.|++++|+|+ +++|++|+.| +.|++|+....       ...+.+|...|.+++|+|++++|+++
T Consensus        26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D-~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~  104 (340)
T 4aow_A           26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRD-KTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG  104 (340)
T ss_dssp             CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETT-SCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCC-CeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence            4445555664 9999999999998 5788888877 59999987542       45678899999999999999999999


Q ss_pred             cCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCee--eecCCCCccEEEEEEcC
Q psy11524        141 GEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSH--SLDKPDTGSVYDLVWSN  216 (323)
Q Consensus       141 ~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~  216 (323)
                      +.|+.|+   +|+.. .........+...+....++|++.+|++++.| .+++||......  .....|...+..++|++
T Consensus       105 ~~d~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~  181 (340)
T 4aow_A          105 SWDGTLR---LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP  181 (340)
T ss_dssp             ETTSEEE---EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECS
T ss_pred             cccccce---EEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEcc
Confidence            9999999   99996 44555666677888999999999999999996 999999875533  34567889999999998


Q ss_pred             CC--CEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCC
Q psy11524        217 DA--TQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKP  289 (323)
Q Consensus       217 ~~--~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~  289 (323)
                      ++  .++++++.|+ |++||+++++.+..  +.+|...|.+++|+|++    ..+++++.++.+.+|++...    ... 
T Consensus       182 ~~~~~~~~s~~~d~~i~i~d~~~~~~~~~--~~~h~~~v~~~~~s~~~----~~l~s~s~Dg~i~iwd~~~~~~~~~~~-  254 (340)
T 4aow_A          182 NSSNPIIVSCGWDKLVKVWNLANCKLKTN--HIGHTGYLNTVTVSPDG----SLCASGGKDGQAMLWDLNEGKHLYTLD-  254 (340)
T ss_dssp             CSSSCEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTS----SEEEEEETTCEEEEEETTTTEEEEEEE-
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCCceeeE--ecCCCCcEEEEEECCCC----CEEEEEeCCCeEEEEEeccCceeeeec-
Confidence            64  4788999999 99999999998888  78899999999999998    78888888888999988764    222 


Q ss_pred             CccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        290 DTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       290 ~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +...+.+++|+|++. +++++.|+.|++|++.
T Consensus       255 ~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~  285 (340)
T 4aow_A          255 GGDIINALCFSPNRY-WLCAATGPSIKIWDLE  285 (340)
T ss_dssp             CSSCEEEEEECSSSS-EEEEEETTEEEEEETT
T ss_pred             CCceEEeeecCCCCc-eeeccCCCEEEEEECC
Confidence            256899999999875 5566779999999874

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=9.4e-33  Score=238.97  Aligned_cols=234  Identities=15%  Similarity=0.096  Sum_probs=185.6

Q ss_pred             CCCCEEEEEEcCC-CCeEEEEeeCCeEEEEeCCCCc----eeEeeccCCCeEEEEECC-CCCEEEEEcCCCceEeeeEEe
Q psy11524         80 VSPPVYSAAWSPD-SNKVLLTQAKSLVIKPLSPNNK----ATKWQAHDGLILKVAWCS-STDLILSGGEDCKYKASFVWD  153 (323)
Q Consensus        80 ~~~~v~~~~~sp~-~~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~i~v~d  153 (323)
                      |...|++++|+|. ++.||+|+.+ |.|++||....    ...+.+|.+.|.+++|+| ++++|++++.||+|+   +||
T Consensus       118 ~~~~V~~l~~~P~~~~~lasGs~d-g~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~---iwd  193 (435)
T 4e54_B          118 FDRRATSLAWHPTHPSTVAVGSKG-GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR---LQD  193 (435)
T ss_dssp             CSSCEEEEEECSSCTTCEEEEETT-SCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE---EEE
T ss_pred             CCCCEEEEEEeCCCCCEEEEEeCC-CEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE---Eee
Confidence            7889999999995 5678877666 69999998654    334568999999999998 689999999999999   999


Q ss_pred             CCCCeeeEeecC---CCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCC-EEEEEecCc
Q psy11524        154 TDGRQLYSSLTH---DHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDAT-QIAGACANV  228 (323)
Q Consensus       154 ~~~~~~~~~~~~---~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~  228 (323)
                      ++++....+..+   ...+.+++|+|++++|++|+.+ .|++||+++..+..+..|...|.+++|+|++. +|++++.|+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~  273 (435)
T 4e54_B          194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ  273 (435)
T ss_dssp             TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTS
T ss_pred             ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcc
Confidence            987766655443   3457899999999999999996 99999999887778888999999999999876 678899999


Q ss_pred             -EEEEEcCCCceeeee-cCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCc------cceeE
Q psy11524        229 -IHIFDISSSSSSNVT-APLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDT------GSVYD  296 (323)
Q Consensus       229 -i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~------~~v~~  296 (323)
                       |++||+++.+....+ ...+|...|.+++|+|++    ..|++++.++.+++|++...    ....|.      ..+..
T Consensus       274 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg----~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  349 (435)
T 4e54_B          274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG----ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIK  349 (435)
T ss_dssp             BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS----SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCB
T ss_pred             eeeEEecccccccceEEEeeeccccccceeECCCC----CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEE
Confidence             999999887654431 135688999999999999    89999999999999998764    111111      12334


Q ss_pred             EEEeeCCCeeEeee------------cCCeEEEEEee
Q psy11524        297 LVWSSDATQIAGAC------------ANGSLLLGTII  321 (323)
Q Consensus       297 ~~~s~~g~~l~s~~------------~dg~i~~~~l~  321 (323)
                      ..|+|++..++++.            .++.|++|++.
T Consensus       350 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~  386 (435)
T 4e54_B          350 AAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGN  386 (435)
T ss_dssp             CEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSS
T ss_pred             EEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECC
Confidence            45666665555443            34679999863

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4e-33  Score=270.10  Aligned_cols=268  Identities=18%  Similarity=0.157  Sum_probs=226.4

Q ss_pred             eeEeecccceeEeeEeccCCcceeeeeeccccccccceeee---------------------------------------
Q psy11524         37 HLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRT---------------------------------------   77 (323)
Q Consensus        37 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------   77 (323)
                      ...+.+|.+.|.++.|+|++..++    +++.|+..++|..                                       
T Consensus       875 ~~~~~~h~~~v~~v~~spdg~~l~----s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  950 (1249)
T 3sfz_A          875 VADCRGHLSWVHGVMFSPDGSSFL----TASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA  950 (1249)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEE----EEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEE
T ss_pred             eeecCCCccceEEEEECCCCCEEE----EEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEe
Confidence            456789999999999999996544    4444444443321                                       


Q ss_pred             -------cCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEe
Q psy11524         78 -------LNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKA  148 (323)
Q Consensus        78 -------~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  148 (323)
                             ..+...+.+++|+|+++++++++.+ |.|++|+....  ...+..|...|.+++|+|++++|++++.||.|+ 
T Consensus       951 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~-g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~- 1028 (1249)
T 3sfz_A          951 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDED-GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQ- 1028 (1249)
T ss_dssp             ESSCCEEEECCSCEEEEEECTTSSEEEEEETT-SCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEE-
T ss_pred             cCcceEEEcccCcEEEEEEcCCCCEEEEEcCC-CCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEE-
Confidence                   1145689999999999999988776 69999998765  566788999999999999999999999999999 


Q ss_pred             eeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCC-CeeeecCCCCccEEEEEEcCCCCEEEEEec
Q psy11524        149 SFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQIAGACA  226 (323)
Q Consensus       149 i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  226 (323)
                        +||+.......+..|...+.+++|+|++. +++++. +.+++||+.+ .....+..|...|.+++|+|+++++++++.
T Consensus      1029 --vwd~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~ 1105 (1249)
T 3sfz_A         1029 --VWNWQTGDYVFLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSA 1105 (1249)
T ss_dssp             --EEETTTTEEECCBCCSSCEEEEEECSSSE-EEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECC
T ss_pred             --EEECCCCceEEEecCCCcEEEEEEcCCCc-EEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcC
Confidence              99998777777788999999999999775 556666 5999999874 455677789999999999999999999999


Q ss_pred             Cc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----c---------CCCCcc
Q psy11524        227 NV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----L---------DKPDTG  292 (323)
Q Consensus       227 d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~---------~~~~~~  292 (323)
                      |+ |++||+.+++++..  +.+|...|.+++|+|++    ..+++++.++.+.+|++..+    .         ...|.+
T Consensus      1106 d~~v~iwd~~~~~~~~~--l~~h~~~v~~~~~s~dg----~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1179 (1249)
T 3sfz_A         1106 DKTAKIWSFDLLSPLHE--LKGHNGCVRCSAFSLDG----ILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGG 1179 (1249)
T ss_dssp             SSCCCEECSSSSSCSBC--CCCCSSCEEEEEECSSS----SEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCS
T ss_pred             CCcEEEEECCCcceeee--eccCCCcEEEEEECCCC----CEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCc
Confidence            99 99999999998887  78899999999999999    89999999999999999865    1         134788


Q ss_pred             ceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        293 SVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       293 ~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      .|.+++|+|||++|++++  |.|++|++.
T Consensus      1180 ~v~~l~fs~dg~~l~s~~--g~v~vwd~~ 1206 (1249)
T 3sfz_A         1180 WVTDVCFSPDSKTLVSAG--GYLKWWNVA 1206 (1249)
T ss_dssp             CCCEEEECTTSSCEEEES--SSEEEBCSS
T ss_pred             eEEEEEECCCCCEEEECC--CeEEEEECC
Confidence            999999999999999885  899999974

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=9.5e-33  Score=235.93  Aligned_cols=233  Identities=11%  Similarity=0.024  Sum_probs=195.9

Q ss_pred             eec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--------eeEeeccCCCeEEEEECCC----C---CEEEE
Q psy11524         76 RTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--------ATKWQAHDGLILKVAWCSS----T---DLILS  139 (323)
Q Consensus        76 ~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--------~~~~~~~~~~v~~~~~~~~----~---~~l~~  139 (323)
                      +.+ .|...|++++|+|  ++|++++.+ +.|++|+....        ...+..|...|.+++|+|+    +   ++|++
T Consensus        10 ~~~~~h~~~i~~~~~~~--~~l~s~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s   86 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN--SFTVSCSGD-GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   86 (397)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETT-SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             hhhhhhhcCeEEEEecC--CeEEEEcCC-CEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence            344 4999999999999  788888776 69999987653        5667889999999999999    9   99999


Q ss_pred             EcCCCceEeeeEEeCC-CCe-----eeEeecC-----CCceeEEEEe----cCCCE-EEEEeCC-eEEEEeCCC------
Q psy11524        140 GGEDCKYKASFVWDTD-GRQ-----LYSSLTH-----DHPISSLAWA----PGGDM-FAVGSYN-TLRLCDKVG------  196 (323)
Q Consensus       140 ~~~d~~i~~i~v~d~~-~~~-----~~~~~~~-----~~~v~~~~~~----p~~~~-l~~~~~~-~i~i~d~~~------  196 (323)
                      ++.|+.|+   +|++. ++.     ...+..|     ...|.+++|+    |++++ |++++.+ .|++||++.      
T Consensus        87 ~~~dg~i~---iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  163 (397)
T 1sq9_A           87 TSFSGDLL---FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  163 (397)
T ss_dssp             EETTSCEE---EEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EcCCCCEE---EEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence            99999999   99996 443     6777777     5899999999    99999 9999986 999999765      


Q ss_pred             -Ceee-----ec-------CCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCC---C---ccceEEEE
Q psy11524        197 -WSHS-----LD-------KPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLS---H---SHEITQLA  256 (323)
Q Consensus       197 -~~~~-----~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~---~---~~~v~~~~  256 (323)
                       ....     .+       ..|...+.+++|+|++ +|++++.|+ |++||+++++.+..  +..   |   ...+.+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~h~~~~~~i~~i~  240 (397)
T 1sq9_A          164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYN--FESQHSMINNSNSIRSVK  240 (397)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEE--EECCC---CCCCCEEEEE
T ss_pred             cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEE--EeccccccccCCccceEE
Confidence             2222     33       4478889999999999 999999999 99999999988887  566   7   88999999


Q ss_pred             EccCCCCccceEEEEeCC---CCeEEEecccc----cCCC-------------CccceeEEEEeeCCCeeEeeecCCeEE
Q psy11524        257 VNQTGSLQERHVAFIDKN---RDLYLSMWSHS----LDKP-------------DTGSVYDLVWSSDATQIAGACANGSLL  316 (323)
Q Consensus       257 ~~p~g~~~d~~l~~~~~~---~~~~~~~~~~~----~~~~-------------~~~~v~~~~~s~~g~~l~s~~~dg~i~  316 (323)
                      |+|++    ..+++++.+   +.+.+|++...    ....             |...|.+++|+|++++|++++.||.|+
T Consensus       241 ~~~~~----~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  316 (397)
T 1sq9_A          241 FSPQG----SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR  316 (397)
T ss_dssp             ECSST----TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             ECCCC----CEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence            99998    788888888   88888887654    3334             789999999999999999999999999


Q ss_pred             EEEee
Q psy11524        317 LGTII  321 (323)
Q Consensus       317 ~~~l~  321 (323)
                      +|++.
T Consensus       317 iwd~~  321 (397)
T 1sq9_A          317 FWDVK  321 (397)
T ss_dssp             EEETT
T ss_pred             EEEcC
Confidence            99974

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-32  Score=228.32  Aligned_cols=234  Identities=13%  Similarity=0.130  Sum_probs=198.1

Q ss_pred             eecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEe
Q psy11524         76 RTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWD  153 (323)
Q Consensus        76 ~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d  153 (323)
                      ....|...|++++|+|++++|++++.+ +.|++|+....  ...+..|...|.+++|+|++++|++++.||.|+   +||
T Consensus        27 ~l~~h~~~v~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~---iwd  102 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNKEGDLLFSCSKD-SSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK---LWD  102 (369)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEEESS-SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE---EEE
T ss_pred             EEEEeeceEEEEEEcCCCCEEEEEeCC-CEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE---EEE
Confidence            334599999999999999999998777 59999997655  677888999999999999999999999999999   999


Q ss_pred             CC-CCeeeEeecCCCceeEEEEecCCCEEEEEeC------CeEEEEeCCCC------------eeeecCCCCc--cEEEE
Q psy11524        154 TD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY------NTLRLCDKVGW------------SHSLDKPDTG--SVYDL  212 (323)
Q Consensus       154 ~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~------~~i~i~d~~~~------------~~~~~~~~~~--~v~~~  212 (323)
                      +. ++.+..+. +...+.+++|+|+++++++++.      +.|++||+...            .......+..  .+.++
T Consensus       103 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (369)
T 3zwl_B          103 VSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA  181 (369)
T ss_dssp             TTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred             CCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence            96 55555555 8889999999999999998876      48999997532            1222333444  89999


Q ss_pred             EEcCCCCEEEEEecCc-EEEEEcCC-CceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----c
Q psy11524        213 VWSNDATQIAGACANV-IHIFDISS-SSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----L  286 (323)
Q Consensus       213 ~~~~~~~~l~~~~~d~-i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~  286 (323)
                      +|+|++++|++++.|+ |++||+++ ++.+..  +..|...|.+++|+|++    ..+++.+.++.+.+|++...    .
T Consensus       182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~v~d~~~~~~~~~  255 (369)
T 3zwl_B          182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDS--IDLHEKSISDMQFSPDL----TYFITSSRDTNSFLVDVSTLQVLKK  255 (369)
T ss_dssp             EECGGGCEEEEEETTSEEEEEETTTTTEEEEE--EECCSSCEEEEEECTTS----SEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEE--EecCCCceeEEEECCCC----CEEEEecCCceEEEEECCCCceeee
Confidence            9999999999999999 99999998 677766  67788999999999998    78888888999999998764    2


Q ss_pred             CCCCccceeEEEEeeCCCeeEeeecCC--------------eEEEEEee
Q psy11524        287 DKPDTGSVYDLVWSSDATQIAGACANG--------------SLLLGTII  321 (323)
Q Consensus       287 ~~~~~~~v~~~~~s~~g~~l~s~~~dg--------------~i~~~~l~  321 (323)
                      .. +...+.+++|+|+++++++++.++              .+++|++.
T Consensus       256 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  303 (369)
T 3zwl_B          256 YE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI  303 (369)
T ss_dssp             EE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETT
T ss_pred             ec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC
Confidence            22 467899999999999999999998              78888863

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=6.4e-32  Score=228.07  Aligned_cols=272  Identities=14%  Similarity=0.122  Sum_probs=209.3

Q ss_pred             eeeeEeecccceeEeeEeccC---Ccceeeeeecc---ccccc--ccee-eec-CCCCCEEEEEEcCCCCeEEEEeeCCe
Q psy11524         35 KNHLTIRRYDGTVINYPISPY---ISVLHSYAASH---SWPQA--LSLC-RTL-NVSPPVYSAAWSPDSNKVLLTQAKSL  104 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~---~~~~~--~~~~-~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~  104 (323)
                      .....+.+|.+.|.++.|+|+   |..++....++   .|+..  .... ..+ .|...|++++|+|++++|++++.+ +
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-g  108 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD-K  108 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT-S
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC-C
Confidence            444567899999999999999   56555544444   35422  2221 233 389999999999999999988777 6


Q ss_pred             EEEEeCCCCc-eeEeeccCCCeEEEEE--CCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCE
Q psy11524        105 VIKPLSPNNK-ATKWQAHDGLILKVAW--CSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDM  180 (323)
Q Consensus       105 ~v~~~~~~~~-~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~  180 (323)
                      .|++|+.... ...+..|...|.+++|  +|++++|++++.|+.|+   +||++ ++.+..+..+ ..+.++.+.+  ..
T Consensus       109 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~---vwd~~~~~~~~~~~~~-~~~~~~~~~~--~~  182 (368)
T 3mmy_A          109 TAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLK---FWDTRSSNPMMVLQLP-ERCYCADVIY--PM  182 (368)
T ss_dssp             EEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEE---EECSSCSSCSEEEECS-SCEEEEEEET--TE
T ss_pred             cEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEE---EEECCCCcEEEEEecC-CCceEEEecC--Ce
Confidence            9999998776 5567789999999999  89999999999999999   99995 5556666554 4566666664  46


Q ss_pred             EEEEeCC-eEEEEeCCCCeee---ecCCCCccEEEEEEcCCCCE----EEEEecCc-EEEEEcCCC---ceeeeecCCCC
Q psy11524        181 FAVGSYN-TLRLCDKVGWSHS---LDKPDTGSVYDLVWSNDATQ----IAGACANV-IHIFDISSS---SSSNVTAPLSH  248 (323)
Q Consensus       181 l~~~~~~-~i~i~d~~~~~~~---~~~~~~~~v~~~~~~~~~~~----l~~~~~d~-i~iwd~~~~---~~~~~~~~~~~  248 (323)
                      +++++.+ .+++||++.....   ....+.....++++.+++..    +++++.|+ |++||++..   +.+..  +..|
T Consensus       183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~--~~~~  260 (368)
T 3mmy_A          183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFT--FKCH  260 (368)
T ss_dssp             EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEE--EECS
T ss_pred             eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccccee--eeee
Confidence            7777775 9999998754222   22234455666766665544    99999999 999999887   33444  4555


Q ss_pred             cc------------ceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecC
Q psy11524        249 SH------------EITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACAN  312 (323)
Q Consensus       249 ~~------------~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~d  312 (323)
                      ..            .|.+++|+|++    ..+++++.++.+.+|++...    ....|...|.+++|+|+|++|++++.|
T Consensus       261 ~~~~~~~~~~~~~~~v~~~~~sp~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d  336 (368)
T 3mmy_A          261 RSNGTNTSAPQDIYAVNGIAFHPVH----GTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSY  336 (368)
T ss_dssp             EEC----CCCEEECCEEEEEECTTT----CCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred             ecccccccccccccceEEEEEecCC----CEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecc
Confidence            54            79999999998    89999999999999998875    556788999999999999999999998


Q ss_pred             CeEEEEE
Q psy11524        313 GSLLLGT  319 (323)
Q Consensus       313 g~i~~~~  319 (323)
                      +..+.|+
T Consensus       337 ~~~~~~~  343 (368)
T 3mmy_A          337 DWSKGHE  343 (368)
T ss_dssp             CSTTCGG
T ss_pred             ccccccc
Confidence            7554443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-31  Score=220.62  Aligned_cols=231  Identities=18%  Similarity=0.197  Sum_probs=196.3

Q ss_pred             ceeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEee
Q psy11524         73 SLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKAS  149 (323)
Q Consensus        73 ~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i  149 (323)
                      ++.+.+ .|...|++++| |++++|++++.+ +.|++|+....  ...+..|...|.+++|+|++++|++++.|+.++  
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~d-g~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~--   84 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRD-GTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN--   84 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETT-SEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE--
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcC-CcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE--
Confidence            344445 49999999999 999999988777 69999998765  566788999999999999999999999999999  


Q ss_pred             eEEeCC----CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcC-CCCEEEE
Q psy11524        150 FVWDTD----GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSN-DATQIAG  223 (323)
Q Consensus       150 ~v~d~~----~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~  223 (323)
                       +|++.    .+....+..|...|.+++|  +++++++++.+ .|++|| ..........|...+.+++|+| +++++++
T Consensus        85 -~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  160 (313)
T 3odt_A           85 -GVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLT  160 (313)
T ss_dssp             -EEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred             -EEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence             99984    3557778889999999999  47799999986 999999 4445566677999999999998 9999999


Q ss_pred             EecCc-EEEEEcCCCceeeeecCCC-CccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEE
Q psy11524        224 ACANV-IHIFDISSSSSSNVTAPLS-HSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDL  297 (323)
Q Consensus       224 ~~~d~-i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~  297 (323)
                      ++.|+ |++||  .++....  +.. +...+.+++|+|++    . ++++..++.+.+|++...    ....|...|.++
T Consensus       161 ~~~d~~i~i~d--~~~~~~~--~~~~~~~~i~~~~~~~~~----~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  231 (313)
T 3odt_A          161 ASADKTIKLWQ--NDKVIKT--FSGIHNDVVRHLAVVDDG----H-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCI  231 (313)
T ss_dssp             EETTSCEEEEE--TTEEEEE--ECSSCSSCEEEEEEEETT----E-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EECCCCEEEEe--cCceEEE--EeccCcccEEEEEEcCCC----e-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEE
Confidence            99999 99999  4444554  344 88899999999997    4 888888999999998765    445678999999


Q ss_pred             EEeeCCCeeEeeecCCeEEEEEee
Q psy11524        298 VWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       298 ~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +|+|++ .|++++.||.|++|++.
T Consensus       232 ~~~~~~-~l~~~~~dg~v~iwd~~  254 (313)
T 3odt_A          232 KLLPNG-DIVSCGEDRTVRIWSKE  254 (313)
T ss_dssp             EECTTS-CEEEEETTSEEEEECTT
T ss_pred             EEecCC-CEEEEecCCEEEEEECC
Confidence            999999 69999999999999974

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-31  Score=223.19  Aligned_cols=238  Identities=14%  Similarity=0.176  Sum_probs=194.1

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeecc---cccc---ccceeeec-CCCCCEEEEEEcCC--CCeEEEEeeCCeEEEE
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASH---SWPQ---ALSLCRTL-NVSPPVYSAAWSPD--SNKVLLTQAKSLVIKP  108 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~-~~~~~v~~~~~sp~--~~~l~~~~~~~~~v~~  108 (323)
                      ..+.+|.+.|.+++|+|++..++....++   .|+.   +.+....+ .|...|++++|+|+  +++|++++.+ +.|++
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g~v~i   83 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-GKVLI   83 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-SCEEE
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC-CEEEE
Confidence            46789999999999999996655444443   2442   33333344 38999999999987  8999988777 69999


Q ss_pred             eCCCCc----eeEeeccCCCeEEEEECCC--CCEEEEEcCCCceEeeeEEeCCCC---eeeEeecCCCceeEEEEec---
Q psy11524        109 LSPNNK----ATKWQAHDGLILKVAWCSS--TDLILSGGEDCKYKASFVWDTDGR---QLYSSLTHDHPISSLAWAP---  176 (323)
Q Consensus       109 ~~~~~~----~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~i~v~d~~~~---~~~~~~~~~~~v~~~~~~p---  176 (323)
                      |+....    ...+..|...|.+++|+|+  +.+|++++.|+.|+   +||+...   ....+..|...|.+++|+|   
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~---v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  160 (379)
T 3jrp_A           84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS---VVEFKENGTTSPIIIDAHAIGVNSASWAPATI  160 (379)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE---EEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred             EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEE---EEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence            998764    4556779999999999999  99999999999999   9999633   4456678899999999999   


Q ss_pred             ----------CCCEEEEEeCC-eEEEEeCCCC-----eeeecCCCCccEEEEEEcCC---CCEEEEEecCc-EEEEEcCC
Q psy11524        177 ----------GGDMFAVGSYN-TLRLCDKVGW-----SHSLDKPDTGSVYDLVWSND---ATQIAGACANV-IHIFDISS  236 (323)
Q Consensus       177 ----------~~~~l~~~~~~-~i~i~d~~~~-----~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~-i~iwd~~~  236 (323)
                                ++.+|++++.+ .|++||++..     ....+..|...|.+++|+|+   +++|++++.|+ |++||+++
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~  240 (379)
T 3jrp_A          161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  240 (379)
T ss_dssp             ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence                      69999999996 9999998642     23456779999999999999   89999999999 99999998


Q ss_pred             Cc---eeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecc
Q psy11524        237 SS---SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWS  283 (323)
Q Consensus       237 ~~---~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~  283 (323)
                      ++   .........+...+.+++|+|++    ..|++.+.++.+.+|++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          241 EQGPWKKTLLKEEKFPDVLWRASWSLSG----NVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             TTSCCEEEESSSSCCSSCEEEEEECSSS----CCEEEEESSSSEEEEEEE
T ss_pred             CCccceeeeeccccCCCcEEEEEEcCCC----CEEEEecCCCcEEEEeCC
Confidence            74   22221134588899999999999    788888889999999876

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.4e-31  Score=224.68  Aligned_cols=237  Identities=9%  Similarity=0.065  Sum_probs=183.0

Q ss_pred             eEeecccceeEeeEeccCCcceee-------eeeccccccccceeee---------------c---CCCCCEEEEEEcCC
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHS-------YAASHSWPQALSLCRT---------------L---NVSPPVYSAAWSPD   92 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~---------------~---~~~~~v~~~~~sp~   92 (323)
                      ..+.+|...|.++.++++.  ++.       .+.+++.|...++|..               .   .+...+.+++||||
T Consensus        67 ~~l~~~~~~v~s~~~~~~~--~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD  144 (365)
T 4h5i_A           67 FALEDNDDSPTAIDASKGI--ILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE  144 (365)
T ss_dssp             EECCTTSCCCCEEEEETTE--EEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred             EEccCCCCceEEEEeCCCE--EEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence            4677888888888776542  221       1223344444444321               1   14456899999999


Q ss_pred             CCeEEEEee-CCeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeE--eecCCCc
Q psy11524         93 SNKVLLTQA-KSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYS--SLTHDHP  168 (323)
Q Consensus        93 ~~~l~~~~~-~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~--~~~~~~~  168 (323)
                      |+++++++. .++.|++||.... ......|...|.+++|+|||+++++++.++.+.   +|..+++.+..  ...|...
T Consensus       145 g~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~---~~~~~~~~~~~~~~~~~~~~  221 (365)
T 4h5i_A          145 GTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEV---ISTVTGSCIARKTDFDKNWS  221 (365)
T ss_dssp             SSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEE---EETTTCCEEEEECCCCTTEE
T ss_pred             CCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEE---EEeccCcceeeeecCCCCCC
Confidence            999987653 4579999998876 222335888999999999999999999776555   55556665543  3457788


Q ss_pred             eeEEEEecCCCEEEEEeCC-----eEEEEeCCCCe-----eeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCC
Q psy11524        169 ISSLAWAPGGDMFAVGSYN-----TLRLCDKVGWS-----HSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSS  237 (323)
Q Consensus       169 v~~~~~~p~~~~l~~~~~~-----~i~i~d~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~  237 (323)
                      +.+++|+|+++.+++++.+     .+++||+....     ...+.+|...|++++|+|+|++||+|+.|+ |+|||++++
T Consensus       222 v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~  301 (365)
T 4h5i_A          222 LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL  301 (365)
T ss_dssp             EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred             EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC
Confidence            9999999999999988752     57888876432     234567888999999999999999999999 999999999


Q ss_pred             ceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        238 SSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       238 ~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      +++.++ +.+|..+|++++|+|+|    .+|+.++.|+.+++|++..
T Consensus       302 ~~~~~~-~~gH~~~V~~v~fSpdg----~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          302 SMSKIF-KQAHSFAITEVTISPDS----TYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEEEEE-TTSSSSCEEEEEECTTS----CEEEEEETTSEEEEEECCT
T ss_pred             cEEEEe-cCcccCCEEEEEECCCC----CEEEEEeCCCeEEEEEcCC
Confidence            988863 57899999999999999    8999999999999999965

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.7e-31  Score=228.74  Aligned_cols=231  Identities=16%  Similarity=0.247  Sum_probs=192.8

Q ss_pred             CEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc------eeEeeccCCCeEEEEECC-CCCEEEEEcCCCceEeeeEEeCC
Q psy11524         83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK------ATKWQAHDGLILKVAWCS-STDLILSGGEDCKYKASFVWDTD  155 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~i~v~d~~  155 (323)
                      ....++++|+...+++.+..+|.|++|+....      ...+.+|.+.|.+++|+| ++++|++++.||.|+   +||+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~---vw~~~  112 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVM---VWEIP  112 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEE---EEECC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEE---EEEcc
Confidence            34458899888777665555579999997543      345678999999999999 899999999999999   99995


Q ss_pred             C--------CeeeEeecCCCceeEEEEecCC-CEEEEEeCC-eEEEEeCCCC-eeeec--CCCCccEEEEEEcCCCCEEE
Q psy11524        156 G--------RQLYSSLTHDHPISSLAWAPGG-DMFAVGSYN-TLRLCDKVGW-SHSLD--KPDTGSVYDLVWSNDATQIA  222 (323)
Q Consensus       156 ~--------~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~~-~i~i~d~~~~-~~~~~--~~~~~~v~~~~~~~~~~~l~  222 (323)
                      .        +.+..+.+|...|.+++|+|++ ++|++++.| .|++||++.. ....+  ..|...|.+++|+|++++|+
T Consensus       113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  192 (402)
T 2aq5_A          113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC  192 (402)
T ss_dssp             TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred             CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence            3        5677888999999999999998 689999986 9999998855 44455  67999999999999999999


Q ss_pred             EEecCc-EEEEEcCCCceeeeecC-CCCccc-eEEEEEccCCCCccceEEEE---eCCCCeEEEecccc------cCCCC
Q psy11524        223 GACANV-IHIFDISSSSSSNVTAP-LSHSHE-ITQLAVNQTGSLQERHVAFI---DKNRDLYLSMWSHS------LDKPD  290 (323)
Q Consensus       223 ~~~~d~-i~iwd~~~~~~~~~~~~-~~~~~~-v~~~~~~p~g~~~d~~l~~~---~~~~~~~~~~~~~~------~~~~~  290 (323)
                      +++.|+ |++||+++++.+..  + ..|... +..++|+|++    ..++++   ..++.+.+|++...      ....|
T Consensus       193 ~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~  266 (402)
T 2aq5_A          193 TSCRDKRVRVIEPRKGTVVAE--KDRPHEGTRPVHAVFVSEG----KILTTGFSRMSERQVALWDTKHLEEPLSLQELDT  266 (402)
T ss_dssp             EEETTSEEEEEETTTTEEEEE--EECSSCSSSCCEEEECSTT----EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCC
T ss_pred             EEecCCcEEEEeCCCCceeee--eccCCCCCcceEEEEcCCC----cEEEEeccCCCCceEEEEcCccccCCceEEeccC
Confidence            999999 99999999998887  4 566655 8999999998    778777   67888999998764      11135


Q ss_pred             ccceeEEEEeeCCCeeE-eeecCCeEEEEEeec
Q psy11524        291 TGSVYDLVWSSDATQIA-GACANGSLLLGTIIQ  322 (323)
Q Consensus       291 ~~~v~~~~~s~~g~~l~-s~~~dg~i~~~~l~~  322 (323)
                      ...+.+++|+|++++|+ +++.||.|++|++.+
T Consensus       267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~  299 (402)
T 2aq5_A          267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS  299 (402)
T ss_dssp             CSSCEEEEEETTTTEEEEEETTCSCEEEEEECS
T ss_pred             CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC
Confidence            67899999999999987 555799999999864

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4.2e-32  Score=229.14  Aligned_cols=234  Identities=12%  Similarity=0.111  Sum_probs=192.8

Q ss_pred             CCCCCEEEEEEcCC----CCeEEEEeeCCeEEEEeCCCCc--eeEeec-----cCCCeEEEEECCC----CCEEEEEcCC
Q psy11524         79 NVSPPVYSAAWSPD----SNKVLLTQAKSLVIKPLSPNNK--ATKWQA-----HDGLILKVAWCSS----TDLILSGGED  143 (323)
Q Consensus        79 ~~~~~v~~~~~sp~----~~~l~~~~~~~~~v~~~~~~~~--~~~~~~-----~~~~v~~~~~~~~----~~~l~~~~~d  143 (323)
                      .|..+|++++|+|+    ...+++++.++ .|++|+....  ...+..     |...|.+++|+|+    +++|++++.|
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d   94 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATVGSN-RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR   94 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEEETT-EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT
T ss_pred             CCCCceEEEEEecccCCCCceEEEECCCC-EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC
Confidence            48999999999994    44566565664 8999998744  334432     5678999999998    6799999999


Q ss_pred             CceEeeeEEeCC-CCeeeEeecCCCceeEEEEec-CCCEEEEEeCC-eEEEEeCCCC-eeeec---CCCCccEEEEEEcC
Q psy11524        144 CKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAP-GGDMFAVGSYN-TLRLCDKVGW-SHSLD---KPDTGSVYDLVWSN  216 (323)
Q Consensus       144 ~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~~-~i~i~d~~~~-~~~~~---~~~~~~v~~~~~~~  216 (323)
                      |.|+   +||+. ++.+..+..|...|.+++|+| ++++|++++.| .|++||++.. ....+   ..|...|.+++|+|
T Consensus        95 g~i~---v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  171 (366)
T 3k26_A           95 GIIR---IINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL  171 (366)
T ss_dssp             CEEE---EECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred             CEEE---EEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence            9999   99995 777788888999999999999 89999999996 9999998855 34444   57999999999999


Q ss_pred             CCCEEEEEecCc-EEEEEcCCCceeeeec--------------------------CCCCccceEEEEEccCCCCccceEE
Q psy11524        217 DATQIAGACANV-IHIFDISSSSSSNVTA--------------------------PLSHSHEITQLAVNQTGSLQERHVA  269 (323)
Q Consensus       217 ~~~~l~~~~~d~-i~iwd~~~~~~~~~~~--------------------------~~~~~~~v~~~~~~p~g~~~d~~l~  269 (323)
                      ++++|++++.|+ |++||+++++....+.                          ...|...|.+++|+  +    ..++
T Consensus       172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~----~~l~  245 (366)
T 3k26_A          172 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G----DLIL  245 (366)
T ss_dssp             TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T----TEEE
T ss_pred             CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C----CEEE
Confidence            999999999999 9999998876543210                          22388899999998  4    6888


Q ss_pred             EEeCCCCeEEEecccc------------------cCCCCccceeEEEEeeC--CCeeEeeecCCeEEEEEeec
Q psy11524        270 FIDKNRDLYLSMWSHS------------------LDKPDTGSVYDLVWSSD--ATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       270 ~~~~~~~~~~~~~~~~------------------~~~~~~~~v~~~~~s~~--g~~l~s~~~dg~i~~~~l~~  322 (323)
                      +.+.++.+.+|++...                  ....|...|.+++|+|+  +++|++++.||.|++|++..
T Consensus       246 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~  318 (366)
T 3k26_A          246 SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV  318 (366)
T ss_dssp             EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS
T ss_pred             EEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC
Confidence            8888899999987653                  22345678999999999  99999999999999999853

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.4e-30  Score=218.01  Aligned_cols=237  Identities=14%  Similarity=0.157  Sum_probs=191.1

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeecc---cccccc-----ceeeec-CCCCCEEEEEEcC--CCCeEEEEeeCCeEE
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASH---SWPQAL-----SLCRTL-NVSPPVYSAAWSP--DSNKVLLTQAKSLVI  106 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~-~~~~~v~~~~~sp--~~~~l~~~~~~~~~v  106 (323)
                      ..+.+|.+.|.++.|+|++..++....++   .|+...     ++...+ .|...|++++|+|  ++++|++++.+ +.|
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d-g~v   83 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD-KTV   83 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT-SCE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC-CeE
Confidence            35679999999999999996555544443   244211     122333 4899999999999  69999988777 599


Q ss_pred             EEeCCCCc-----------eeEeeccCCCeEEEEECCC--CCEEEEEcCCCceEeeeEEeCC-CCeeeEe----------
Q psy11524        107 KPLSPNNK-----------ATKWQAHDGLILKVAWCSS--TDLILSGGEDCKYKASFVWDTD-GRQLYSS----------  162 (323)
Q Consensus       107 ~~~~~~~~-----------~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~----------  162 (323)
                      ++|+....           ...+..|...|.+++|+|+  +++|++++.|+.|+   +||++ ++.+..+          
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~---iwd~~~~~~~~~~~~~~~~~~~~  160 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILR---LYDALEPSDLRSWTLTSEMKVLS  160 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEE---EEECSSTTCTTCCEEEEEEESCS
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEE---EecCCChHHhccccccccccccc
Confidence            99997653           5567789999999999999  99999999999999   99985 3322222          


Q ss_pred             ---ecCCCceeEEEEecC---CCEEEEEeCC-eEEEEeCCCCe---eeecCCCCccEEEEEEcCCC----CEEEEEecCc
Q psy11524        163 ---LTHDHPISSLAWAPG---GDMFAVGSYN-TLRLCDKVGWS---HSLDKPDTGSVYDLVWSNDA----TQIAGACANV  228 (323)
Q Consensus       163 ---~~~~~~v~~~~~~p~---~~~l~~~~~~-~i~i~d~~~~~---~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~  228 (323)
                         ..+...+.+++|+|+   +..+++++.+ .+.+|+.....   ...+.+|...|.+++|+|++    ++|++++.|+
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg  240 (351)
T 3f3f_A          161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG  240 (351)
T ss_dssp             CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred             cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence               156778999999997   8999999997 77677665443   45677799999999999998    8999999999


Q ss_pred             -EEEEEcCCC----------------------------------------------ceeeeecCCCCccceEEEEEccCC
Q psy11524        229 -IHIFDISSS----------------------------------------------SSSNVTAPLSHSHEITQLAVNQTG  261 (323)
Q Consensus       229 -i~iwd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~~~~~p~g  261 (323)
                       |++||++.+                                              +.+..  +.+|...|++++|+|++
T Consensus       241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~s~~~  318 (351)
T 3f3f_A          241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE--HDDHNGEVWSVSWNLTG  318 (351)
T ss_dssp             CEEEEEEEECC---------------------------------------CCSEEEEEEEE--ECTTSSCEEEEEECSSS
T ss_pred             eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEE--EecccccEEEEEEcCCC
Confidence             999998865                                              34444  57899999999999998


Q ss_pred             CCccceEEEEeCCCCeEEEeccc
Q psy11524        262 SLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       262 ~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                          ..|++++.++.+.+|++..
T Consensus       319 ----~~l~s~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          319 ----TILSSAGDDGKVRLWKATY  337 (351)
T ss_dssp             ----CCEEEEETTSCEEEEEECT
T ss_pred             ----CEEEEecCCCcEEEEecCc
Confidence                8999999999999999986

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.7e-30  Score=224.80  Aligned_cols=259  Identities=12%  Similarity=0.176  Sum_probs=208.2

Q ss_pred             eecccceeEeeEeccCCcceeeeeecc---ccc-cccceeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc
Q psy11524         40 IRRYDGTVINYPISPYISVLHSYAASH---SWP-QALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK  114 (323)
Q Consensus        40 ~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~  114 (323)
                      ..+|...|.++.+  ++..++....++   .|| .+.+....+ .|...|.+++|  ++++|++|+.+ +.|++|+....
T Consensus       129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~d-g~i~vwd~~~~  203 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSD-STVRVWDVNTG  203 (435)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETT-SCEEEEESSSC
T ss_pred             ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCC-CeEEEEECCCC
Confidence            3456677888877  664444433333   244 223333444 38999999999  78899988777 69999998765


Q ss_pred             --eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC-Cee---eEeecCCCceeEEEEecCCCEEEEEeCC-
Q psy11524        115 --ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG-RQL---YSSLTHDHPISSLAWAPGGDMFAVGSYN-  187 (323)
Q Consensus       115 --~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~-~~~---~~~~~~~~~v~~~~~~p~~~~l~~~~~~-  187 (323)
                        ...+..|...|.+++|++  ..+++++.||.|+   +||++. ...   ..+.+|...|.+++|  +++++++++.| 
T Consensus       204 ~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~---vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg  276 (435)
T 1p22_A          204 EMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIA---VWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDR  276 (435)
T ss_dssp             CEEEEECCCCSCEEEEECCT--TEEEEEETTSCEE---EEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred             cEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEE---EEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCC
Confidence              667889999999999974  5999999999999   999963 333   566789999999999  68899999996 


Q ss_pred             eEEEEeCCC-CeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCcc
Q psy11524        188 TLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQE  265 (323)
Q Consensus       188 ~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d  265 (323)
                      .|++||+++ .....+..|...+.+++++  ++++++++.|+ |++||+++++.+.+  +.+|...|.+++|  ++    
T Consensus       277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~~~~--~~----  346 (435)
T 1p22_A          277 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRV--LEGHEELVRCIRF--DN----  346 (435)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEC--CS----
T ss_pred             eEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEE--EeCCcCcEEEEEe--cC----
Confidence            999999875 4566777899999999994  67999999999 99999999999988  7889999999999  45    


Q ss_pred             ceEEEEeCCCCeEEEecccc-------------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        266 RHVAFIDKNRDLYLSMWSHS-------------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       266 ~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      ..+++++.++.+.+|++...             ....|...|.+++|  ++++|++++.||.|++|++.+
T Consensus       347 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~  414 (435)
T 1p22_A          347 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLN  414 (435)
T ss_dssp             SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred             CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence            78999999999999998542             34567889999999  788999999999999999854

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-30  Score=225.20  Aligned_cols=232  Identities=7%  Similarity=-0.010  Sum_probs=183.1

Q ss_pred             CCCCEEEEEEcCCCCeE-EEEeeCCeEEEEeCCC--Cc--eeEee--ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEE
Q psy11524         80 VSPPVYSAAWSPDSNKV-LLTQAKSLVIKPLSPN--NK--ATKWQ--AHDGLILKVAWCSSTDLILSGGEDCKYKASFVW  152 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l-~~~~~~~~~v~~~~~~--~~--~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~  152 (323)
                      |...|.+++|+|++++| ++++.+ +.|++|+..  ..  ...+.  .|...|.+++|+|++++|++++.+|.++   +|
T Consensus       101 ~~~~v~~~~~s~d~~~l~~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~---~~  176 (450)
T 2vdu_B          101 IYSYIRNLRLTSDESRLIACADSD-KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVY---SI  176 (450)
T ss_dssp             CCCCEEEEEECTTSSEEEEEEGGG-TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEE---EE
T ss_pred             cCCceEEEEEcCCCCEEEEEECCC-CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEE---EE
Confidence            34479999999999997 555455 699999977  43  44444  6778999999999999999999999999   99


Q ss_pred             eCC-CC----eeeEeecCCCceeEEEEecC---CCEEEEEeCC-eEEEEeCCCC-eeee-cCCCCccEEEEEEcCCCCEE
Q psy11524        153 DTD-GR----QLYSSLTHDHPISSLAWAPG---GDMFAVGSYN-TLRLCDKVGW-SHSL-DKPDTGSVYDLVWSNDATQI  221 (323)
Q Consensus       153 d~~-~~----~~~~~~~~~~~v~~~~~~p~---~~~l~~~~~~-~i~i~d~~~~-~~~~-~~~~~~~v~~~~~~~~~~~l  221 (323)
                      ++. ++    ....+.+|...|.+++|+|+   +++|++++.| .|++||++.. .... ..+|...|.+++|+ ++++|
T Consensus       177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l  255 (450)
T 2vdu_B          177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLL  255 (450)
T ss_dssp             ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEE
T ss_pred             ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEE
Confidence            985 33    22367789999999999999   9999999997 9999998743 4443 66899999999999 99999


Q ss_pred             EEEecCc-EEEEEcCCCceeeeecCC-----------------------CCccceEEEEEccCCCCccceEEEEe-CCCC
Q psy11524        222 AGACANV-IHIFDISSSSSSNVTAPL-----------------------SHSHEITQLAVNQTGSLQERHVAFID-KNRD  276 (323)
Q Consensus       222 ~~~~~d~-i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~~~~~~p~g~~~d~~l~~~~-~~~~  276 (323)
                      ++++.|+ |++||+++++.+..+...                       .....+.+++|+|++    ..+++.. .++.
T Consensus       256 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~----~~l~~~~~~d~~  331 (450)
T 2vdu_B          256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL----PFVAFFVEATKC  331 (450)
T ss_dssp             EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS----SEEEEEETTCSE
T ss_pred             EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC----CEEEEEECCCCe
Confidence            9999999 999999999887763211                       233578999999998    7777777 7788


Q ss_pred             eEEEec--ccc-------cCCCCccceeEEEEeeCCCeeEeeec------CCeEEEEEee
Q psy11524        277 LYLSMW--SHS-------LDKPDTGSVYDLVWSSDATQIAGACA------NGSLLLGTII  321 (323)
Q Consensus       277 ~~~~~~--~~~-------~~~~~~~~v~~~~~s~~g~~l~s~~~------dg~i~~~~l~  321 (323)
                      +.+|++  ...       ....| ..|.+++|+|++.++++++.      +..|.+|.+.
T Consensus       332 i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          332 IIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             EEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             EEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence            888888  221       23344 78999999996544444443      5568888874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=8.6e-30  Score=222.20  Aligned_cols=266  Identities=15%  Similarity=0.115  Sum_probs=209.3

Q ss_pred             eeeEeecccceeEeeEeccCCcceeeeeecc---ccc-cccceeeecC-CCCCEEEEEEc--CCCCeEEEEeeCCeEEEE
Q psy11524         36 NHLTIRRYDGTVINYPISPYISVLHSYAASH---SWP-QALSLCRTLN-VSPPVYSAAWS--PDSNKVLLTQAKSLVIKP  108 (323)
Q Consensus        36 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~-~~~~v~~~~~s--p~~~~l~~~~~~~~~v~~  108 (323)
                      ....+.+|.+.|.++.|+|++ .++....++   .|| .+.+....+. |...|.+++|+  ++++++++++.+ +.|++
T Consensus       154 ~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d-~~i~v  231 (464)
T 3v7d_B          154 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD-NTLHV  231 (464)
T ss_dssp             EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETT-SCEEE
T ss_pred             EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCC-CcEEE
Confidence            345678999999999999988 333333222   244 2233334443 89999999998  577888888777 69999


Q ss_pred             eCCCCc-------------------------eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEe
Q psy11524        109 LSPNNK-------------------------ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSS  162 (323)
Q Consensus       109 ~~~~~~-------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~  162 (323)
                      |+....                         ...+.+|...+.++  +++++++++++.|+.|+   +||+. ++.+..+
T Consensus       232 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~---vwd~~~~~~~~~~  306 (464)
T 3v7d_B          232 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLI---VWDVAQMKCLYIL  306 (464)
T ss_dssp             EECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEE---EEETTTTEEEEEE
T ss_pred             eeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEE---EEECCCCcEEEEe
Confidence            997654                         22456788888876  57789999999999999   99995 6677788


Q ss_pred             ecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCC-CeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCce
Q psy11524        163 LTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSS  239 (323)
Q Consensus       163 ~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~  239 (323)
                      .+|...|.+++|+|+++++++++.| .|++||+++ .....+.+|...|.+++|+  +++|++++.|+ |++||+++++.
T Consensus       307 ~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~  384 (464)
T 3v7d_B          307 SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR  384 (464)
T ss_dssp             CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCce
Confidence            8899999999999999999999996 999999874 4666778899999999998  57999999999 99999998877


Q ss_pred             eeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----cCCCCccceeEEEEeeCCCeeEeeecCCe
Q psy11524        240 SNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----LDKPDTGSVYDLVWSSDATQIAGACANGS  314 (323)
Q Consensus       240 ~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~  314 (323)
                      ...   ..+...+..++|+|++    ..+++++ ++.+.+|++..+     ....|...|.+++|+ +...+++++.||.
T Consensus       385 ~~~---~~~~~~~~~~~~~~~~----~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~  455 (464)
T 3v7d_B          385 KFS---YHHTNLSAITTFYVSD----NILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQ  455 (464)
T ss_dssp             EEE---EECTTCCCEEEEEECS----SEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTE
T ss_pred             eee---ecCCCCccEEEEEeCC----CEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCe
Confidence            665   2456678888999998    7777777 888999998775     245578999999997 3445556667776


Q ss_pred             EEEEE
Q psy11524        315 LLLGT  319 (323)
Q Consensus       315 i~~~~  319 (323)
                      +.+|-
T Consensus       456 ~~i~~  460 (464)
T 3v7d_B          456 SFLEI  460 (464)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            65553

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5e-30  Score=219.59  Aligned_cols=226  Identities=15%  Similarity=0.232  Sum_probs=186.8

Q ss_pred             CEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEee-ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCe
Q psy11524         83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQ-AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQ  158 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~  158 (323)
                      .+.+++|++  ..+++++.+ +.|++|+....  ...+. .|...|.+++|+|++++|++++.||.|+   +||+. ++.
T Consensus        95 ~~~~~~~s~--~~l~~~~~d-~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~---iwd~~~~~~  168 (401)
T 4aez_A           95 YLNLLDWSN--LNVVAVALE-RNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVD---IYDVESQTK  168 (401)
T ss_dssp             TCBCEEECT--TSEEEEEET-TEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEE---EEETTTCCE
T ss_pred             eEEEEeecC--CCEEEEECC-CeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEE---EEECcCCeE
Confidence            455677765  557777777 59999998765  33333 3789999999999999999999999999   99995 677


Q ss_pred             eeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCC--CCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEc
Q psy11524        159 LYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKV--GWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDI  234 (323)
Q Consensus       159 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~  234 (323)
                      +..+..|...|.+++|+  ++++++++.+ .|++||++  ......+..|...|.+++|+|++++|++++.|+ |++||+
T Consensus       169 ~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~  246 (401)
T 4aez_A          169 LRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDA  246 (401)
T ss_dssp             EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             EEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccC
Confidence            88888999999999995  6799999996 99999987  335567778999999999999999999999999 999999


Q ss_pred             CCCceeeeecCCCCccceEEEEEccCCCCccceEEEEe--CCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEe
Q psy11524        235 SSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFID--KNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAG  308 (323)
Q Consensus       235 ~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~--~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s  308 (323)
                      ++++.+..  +..|...|.+++|+|++.   ..+++++  .++.+.+|++...    ... +...|.+++|+|++++|++
T Consensus       247 ~~~~~~~~--~~~~~~~v~~~~~~p~~~---~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~  320 (401)
T 4aez_A          247 RSSIPKFT--KTNHNAAVKAVAWCPWQS---NLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMS  320 (401)
T ss_dssp             TCSSEEEE--ECCCSSCCCEEEECTTST---TEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEE
T ss_pred             CCCCccEE--ecCCcceEEEEEECCCCC---CEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEE
Confidence            99998887  678999999999999873   4444443  5777777776654    111 3678999999999999998


Q ss_pred             --eecCCeEEEEEeec
Q psy11524        309 --ACANGSLLLGTIIQ  322 (323)
Q Consensus       309 --~~~dg~i~~~~l~~  322 (323)
                        |+.||.|++|++..
T Consensus       321 ~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          321 THGFPDNNLSIWSYSS  336 (401)
T ss_dssp             EECTTTCEEEEEEEET
T ss_pred             EeecCCCcEEEEecCC
Confidence              44899999999854

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=5.1e-30  Score=215.84  Aligned_cols=265  Identities=9%  Similarity=0.052  Sum_probs=195.6

Q ss_pred             EeecccceeEeeEeccCCcceeeeeecc--cccc-ccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-
Q psy11524         39 TIRRYDGTVINYPISPYISVLHSYAASH--SWPQ-ALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-  114 (323)
Q Consensus        39 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-  114 (323)
                      ..+.|...|.+++|+|||..++....++  .|+. +.+..... +...+..+++.++++.++.++..++.|++||.... 
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~   92 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQ-EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ   92 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEE-ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeee-ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc
Confidence            4578999999999999996555433322  2431 11111111 22358889999999988766555569999998765 


Q ss_pred             -eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC--CeeeEeecCCCceeEEEEecCCCEEEEE--eCC-e
Q psy11524        115 -ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG--RQLYSSLTHDHPISSLAWAPGGDMFAVG--SYN-T  188 (323)
Q Consensus       115 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~--~~~~~~~~~~~~v~~~~~~p~~~~l~~~--~~~-~  188 (323)
                       +..+ .+...|.+++|+++.  ++++ .++.|+   +||+..  +.+..+..   +...+++++  .+++++  +.+ .
T Consensus        93 ~~~~~-~~~~~v~~v~~~~~~--~~~~-~~~~i~---i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~  160 (355)
T 3vu4_A           93 DVSRI-KVDAPVKDLFLSREF--IVVS-YGDVIS---VFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQ  160 (355)
T ss_dssp             EEEEE-ECSSCEEEEEECSSE--EEEE-ETTEEE---EEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTC
T ss_pred             EEEEE-ECCCceEEEEEcCCE--EEEE-EcCEEE---EEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcE
Confidence             3444 477899999999864  4433 378899   999964  45555544   445567777  567664  445 9


Q ss_pred             EEEEeCCCCe-----------------eeecCCCCccEEEEEEcCCCCEEEEEecCc--EEEEEcCCCceeeeecCC-C-
Q psy11524        189 LRLCDKVGWS-----------------HSLDKPDTGSVYDLVWSNDATQIAGACANV--IHIFDISSSSSSNVTAPL-S-  247 (323)
Q Consensus       189 i~i~d~~~~~-----------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~-~-  247 (323)
                      |++||++...                 ...+.+|...|.+++|+|+|++|++++.|+  |++||+++++.+.+  +. + 
T Consensus       161 v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~--~~~g~  238 (355)
T 3vu4_A          161 IHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE--FRRGL  238 (355)
T ss_dssp             EEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEE--EECTT
T ss_pred             EEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE--EEcCC
Confidence            9999988543                 567788999999999999999999999998  99999999999988  44 4 


Q ss_pred             CccceEEEEEccCCCCccceEEEEeCCCCeEEEecccccC---------------------------CCCccceeEEEEe
Q psy11524        248 HSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLD---------------------------KPDTGSVYDLVWS  300 (323)
Q Consensus       248 ~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~v~~~~~s  300 (323)
                      |...|.+++|+|++    ..+++++.++.+++|++.....                           ..+......++|+
T Consensus       239 h~~~v~~~~~s~~~----~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  314 (355)
T 3vu4_A          239 DRADVVDMKWSTDG----SKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI  314 (355)
T ss_dssp             CCSCEEEEEECTTS----CEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES
T ss_pred             CCCcEEEEEECCCC----CEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEe
Confidence            88999999999999    8899999999999999865310                           0011223679999


Q ss_pred             eCCCeeEeeecCCeEEEEEeec
Q psy11524        301 SDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       301 ~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      |+|+.|++++.||.+++|++.+
T Consensus       315 ~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          315 SESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             SSSEEEEEETTTTEEEEEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEEEEc
Confidence            9999999999999999999753

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2e-29  Score=218.77  Aligned_cols=261  Identities=18%  Similarity=0.176  Sum_probs=213.4

Q ss_pred             eeeEeecccceeEeeEeccCCcceeeeeecccccccccee--------eec-CCCCCEEEEEEcCCCCeEEEEeeCCeEE
Q psy11524         36 NHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLC--------RTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVI  106 (323)
Q Consensus        36 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v  106 (323)
                      ....+.+|.+.|.++.++++      .+++++.|++.++|        ..+ .|...|.+++|+  ++.+++++.+ +.|
T Consensus       151 ~~~~~~~h~~~v~~~~~~~~------~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~d-g~i  221 (445)
T 2ovr_B          151 CLRTLVGHTGGVWSSQMRDN------IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRD-ATL  221 (445)
T ss_dssp             EEEECCCCSSCEEEEEEETT------EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETT-SEE
T ss_pred             EEEEEcCCCCCEEEEEecCC------EEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCC-CEE
Confidence            34567889999999999842      34444444443333        334 389999999996  5678888777 699


Q ss_pred             EEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEE
Q psy11524        107 KPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAV  183 (323)
Q Consensus       107 ~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~  183 (323)
                      ++|+....  ...+..|...|.+++|  +++++++++.||.|+   +||++ ++.+..+..|...+.+++|  ++.++++
T Consensus       222 ~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~---iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~  294 (445)
T 2ovr_B          222 RVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVK---VWDPETETCLHTLQGHTNRVYSLQF--DGIHVVS  294 (445)
T ss_dssp             EEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEE---EEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEE
T ss_pred             EEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEE---EEECCCCcEeEEecCCCCceEEEEE--CCCEEEE
Confidence            99998765  6678899999999999  688999999999999   99995 6677788889999999999  7889999


Q ss_pred             EeCC-eEEEEeCCC-CeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCC---CccceEEEEE
Q psy11524        184 GSYN-TLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLS---HSHEITQLAV  257 (323)
Q Consensus       184 ~~~~-~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~  257 (323)
                      ++.| .|++||++. .....+..|...+.++.++  ++++++++.|+ |++||+++++.+..  +..   |...|.+++|
T Consensus       295 ~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~v~~~~~  370 (445)
T 2ovr_B          295 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQT--LQGPNKHQSAVTCLQF  370 (445)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE--ECSTTSCSSCEEEEEE
T ss_pred             EeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEE--EccCCCCCCCEEEEEE
Confidence            9986 999999874 4566777888889888875  56999999999 99999999998887  443   7889999999


Q ss_pred             ccCCCCccceEEEEeCCCCeEEEecccc-----c----CCCCccceeEEEEeeCCCeeEeeecCCe----EEEEEeec
Q psy11524        258 NQTGSLQERHVAFIDKNRDLYLSMWSHS-----L----DKPDTGSVYDLVWSSDATQIAGACANGS----LLLGTIIQ  322 (323)
Q Consensus       258 ~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----~----~~~~~~~v~~~~~s~~g~~l~s~~~dg~----i~~~~l~~  322 (323)
                      ++      ..+++++.++.+.+|++..+     +    ...|.+.|.+++|+|++.+|++|+.||+    |.+|++..
T Consensus       371 ~~------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          371 NK------NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             CS------SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CC------CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            64      57888888888888888764     1    1346788999999999999999999998    99999853

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.98  E-value=3.4e-29  Score=217.32  Aligned_cols=263  Identities=14%  Similarity=0.222  Sum_probs=212.1

Q ss_pred             eeeEeecccceeEeeEeccCCcceeeeeecc---ccc-cccceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeC
Q psy11524         36 NHLTIRRYDGTVINYPISPYISVLHSYAASH---SWP-QALSLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLS  110 (323)
Q Consensus        36 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~  110 (323)
                      ....+.+|.+.+.. .+++++..++....++   .|+ .+.+....+. |...|.+++|+  ++.+++++.+ +.|++|+
T Consensus       110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d-g~i~vwd  185 (445)
T 2ovr_B          110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTD-RTLKVWN  185 (445)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETT-SCEEEEE
T ss_pred             eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCC-CeEEEEE
Confidence            44678899887644 3555675444433333   244 2333334443 89999999998  5688888776 6999999


Q ss_pred             CCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC
Q psy11524        111 PNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN  187 (323)
Q Consensus       111 ~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~  187 (323)
                      ....  ...+..|...|.++.|+  ++.+++++.||.|+   +||+. ++.+..+..|...+.+++|  +++++++++.+
T Consensus       186 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~---~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d  258 (445)
T 2ovr_B          186 AETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLR---VWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYD  258 (445)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEE---EEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETT
T ss_pred             CCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEE---EEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCC
Confidence            8765  66788999999999995  56899999999999   99995 7778888899999999999  68899999986


Q ss_pred             -eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCc
Q psy11524        188 -TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQ  264 (323)
Q Consensus       188 -~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~  264 (323)
                       .|++||++.. ....+..|...+.+++|  ++.++++++.|+ |++||+++++.+..  +.+|...+.++.++  +   
T Consensus       259 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~--~---  329 (445)
T 2ovr_B          259 FMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHT--LTGHQSLTSGMELK--D---  329 (445)
T ss_dssp             SCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEE--ECCCCSCEEEEEEE--T---
T ss_pred             CEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEE--EcCCcccEEEEEEe--C---
Confidence             9999998754 55677789999999999  788999999999 99999999999888  68888899888875  4   


Q ss_pred             cceEEEEeCCCCeEEEecccc----cCC---CCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        265 ERHVAFIDKNRDLYLSMWSHS----LDK---PDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       265 d~~l~~~~~~~~~~~~~~~~~----~~~---~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                       +.+++++.++.+.+|++...    ...   .|...|.+++|+  +++|++++.||.|++|++.
T Consensus       330 -~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~  390 (445)
T 2ovr_B          330 -NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK  390 (445)
T ss_dssp             -TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred             -CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECC
Confidence             68888899999999998664    222   378899999995  6799999999999999974

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.98  E-value=1.6e-29  Score=213.27  Aligned_cols=243  Identities=15%  Similarity=0.175  Sum_probs=191.4

Q ss_pred             ceeeec-CCCCCEEEEEEcCC---CCeEEEEeeCCeEEEEeCCCC-c---eeEeeccCCCeEEEEECCCCCEEEEEcCCC
Q psy11524         73 SLCRTL-NVSPPVYSAAWSPD---SNKVLLTQAKSLVIKPLSPNN-K---ATKWQAHDGLILKVAWCSSTDLILSGGEDC  144 (323)
Q Consensus        73 ~~~~~~-~~~~~v~~~~~sp~---~~~l~~~~~~~~~v~~~~~~~-~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  144 (323)
                      +..+.+ .|.+.|++++|+|+   |++|++++.+ +.|++|+... .   ...+..|...|.+++|+|++++|++++.||
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg  108 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWA-NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK  108 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETT-SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCceEEEEECCC-CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence            334444 48999999999999   5899988777 6999999875 2   256788999999999999999999999999


Q ss_pred             ceEeeeEEeCCCCeeeEeecCCCceeEEEE--ecCCCEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCE
Q psy11524        145 KYKASFVWDTDGRQLYSSLTHDHPISSLAW--APGGDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQ  220 (323)
Q Consensus       145 ~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~--~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~  220 (323)
                      .|+   +||++......+..|...|.+++|  +|++++|++++.| .|++||++.. ....+. ....+.++.+.++  .
T Consensus       109 ~v~---iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~--~  182 (368)
T 3mmy_A          109 TAK---MWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ-LPERCYCADVIYP--M  182 (368)
T ss_dssp             EEE---EEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE-CSSCEEEEEEETT--E
T ss_pred             cEE---EEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe-cCCCceEEEecCC--e
Confidence            999   999987777778889999999999  8899999999986 9999998754 344443 3346777777654  7


Q ss_pred             EEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-------cCCCCcc
Q psy11524        221 IAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-------LDKPDTG  292 (323)
Q Consensus       221 l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-------~~~~~~~  292 (323)
                      +++++.++ +.+||++............+......+++.++.......+++++.++.+.+|++...       ....|..
T Consensus       183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~  262 (368)
T 3mmy_A          183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS  262 (368)
T ss_dssp             EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE
T ss_pred             eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec
Confidence            88888899 999999876544432233445566667766655211223888899999999988763       2334444


Q ss_pred             ------------ceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        293 ------------SVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       293 ------------~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                                  .|.+++|+|++++|++++.||.|++|++.+
T Consensus       263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~  304 (368)
T 3mmy_A          263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA  304 (368)
T ss_dssp             C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence                        799999999999999999999999999753

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=3.3e-31  Score=226.17  Aligned_cols=235  Identities=13%  Similarity=0.166  Sum_probs=162.5

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-------eeEeeccCCCeEEEEECC--------CCCEEEEEcCCC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-------ATKWQAHDGLILKVAWCS--------STDLILSGGEDC  144 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~d~  144 (323)
                      |........+++++.+|++++.| +.|++|+....       ...+.+|.+.|.+++|+|        |+++||+++.|+
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d-~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~  166 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQD-NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC  166 (393)
T ss_dssp             ---------CCEEEEEEEEEETT-SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred             cCCCcceeecCCCCCEEEEEeCC-CcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence            44445555566677788888777 59999997665       123578999999999998        789999999999


Q ss_pred             ceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCC-CEEEEEeCC-eEEEEeCCCCeee---------------------
Q psy11524        145 KYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGG-DMFAVGSYN-TLRLCDKVGWSHS---------------------  200 (323)
Q Consensus       145 ~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~~-~i~i~d~~~~~~~---------------------  200 (323)
                      +|+   +||++ +.++..+..|..++.+++|+|++ .+|++++.| +|++||++.....                     
T Consensus       167 tv~---~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~  243 (393)
T 4gq1_A          167 TLI---IWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP  243 (393)
T ss_dssp             EEE---EEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred             eEE---EEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence            999   99994 66777788899999999999987 478999986 9999998643211                     


Q ss_pred             -----ecCCCCccEEEEEEc-CCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCC-----------
Q psy11524        201 -----LDKPDTGSVYDLVWS-NDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGS-----------  262 (323)
Q Consensus       201 -----~~~~~~~~v~~~~~~-~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~-----------  262 (323)
                           ...+|...+.++.|+ |+|+.|++++.|+ +++||+..++....  +..+...+..+.+.|+.+           
T Consensus       244 ~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (393)
T 4gq1_A          244 LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNE--ISDSTMKLGPKNLLPNVQGISLFPSLLGA  321 (393)
T ss_dssp             GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------CCSCSEEEECSSCCSSCC
T ss_pred             ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCce--EeeecCccccEEEccccccccccCcceeE
Confidence                 123466778899987 7999999999999 99999998876665  455655565555555432           


Q ss_pred             ----Cccc-eEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        263 ----LQER-HVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       263 ----~~d~-~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                          ..++ .++.++.++.+++|+....    ....|..+|.+++|||||++||+++++| +.+|+|.
T Consensus       322 ~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          322 CPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             EECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             EEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence                1123 4455677889999998765    2234678999999999999999998766 6666664

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.5e-29  Score=217.50  Aligned_cols=191  Identities=11%  Similarity=0.043  Sum_probs=160.0

Q ss_pred             cCCCeEEEEECCCCCEE-EEEcCCCceEeeeEEeCC---CCeeeEee--cCCCceeEEEEecCCCEEEEEeCC-eEEEEe
Q psy11524        121 HDGLILKVAWCSSTDLI-LSGGEDCKYKASFVWDTD---GRQLYSSL--THDHPISSLAWAPGGDMFAVGSYN-TLRLCD  193 (323)
Q Consensus       121 ~~~~v~~~~~~~~~~~l-~~~~~d~~i~~i~v~d~~---~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d  193 (323)
                      |.+.|.+++|+|++++| ++++.||.|+   +||+.   ++.+..+.  .+...|.+++|+|++++|++++.+ .+++|+
T Consensus       101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~---iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~  177 (450)
T 2vdu_B          101 IYSYIRNLRLTSDESRLIACADSDKSLL---VFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID  177 (450)
T ss_dssp             CCCCEEEEEECTTSSEEEEEEGGGTEEE---EEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cCCceEEEEEcCCCCEEEEEECCCCeEE---EEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            44479999999999996 8999999999   99986   44555554  567889999999999999999995 999999


Q ss_pred             CCCCe-e----eecCCCCccEEEEEEcCC---CCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCc
Q psy11524        194 KVGWS-H----SLDKPDTGSVYDLVWSND---ATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQ  264 (323)
Q Consensus       194 ~~~~~-~----~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~  264 (323)
                      +.... .    ..+.+|...|.+++|+|+   +++|++++.|+ |++||+++++.+..+ +.+|...|.+++|+ ++   
T Consensus       178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~h~~~v~~~~~s-d~---  252 (450)
T 2vdu_B          178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW-LFGHKHFVSSICCG-KD---  252 (450)
T ss_dssp             TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE-CCCCSSCEEEEEEC-ST---
T ss_pred             cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee-ecCCCCceEEEEEC-CC---
Confidence            86432 2    255668899999999999   99999999999 999999999877663 46899999999999 88   


Q ss_pred             cceEEEEeCCCCeEEEecccc----cCC-------------------------CCccceeEEEEeeCCCeeEeee-cCCe
Q psy11524        265 ERHVAFIDKNRDLYLSMWSHS----LDK-------------------------PDTGSVYDLVWSSDATQIAGAC-ANGS  314 (323)
Q Consensus       265 d~~l~~~~~~~~~~~~~~~~~----~~~-------------------------~~~~~v~~~~~s~~g~~l~s~~-~dg~  314 (323)
                       ..+++++.++.+.+|++...    ...                         .....|.+++|+|++++|++++ .|+.
T Consensus       253 -~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~  331 (450)
T 2vdu_B          253 -YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKC  331 (450)
T ss_dssp             -TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSE
T ss_pred             -CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCe
Confidence             78888888888888887654    111                         1235689999999999999998 8999


Q ss_pred             EEEEEe
Q psy11524        315 LLLGTI  320 (323)
Q Consensus       315 i~~~~l  320 (323)
                      |++|++
T Consensus       332 i~iw~~  337 (450)
T 2vdu_B          332 IIILEM  337 (450)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999998

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.7e-29  Score=235.74  Aligned_cols=232  Identities=10%  Similarity=0.097  Sum_probs=188.4

Q ss_pred             eecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCce-eEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC
Q psy11524         76 RTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKA-TKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT  154 (323)
Q Consensus        76 ~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~  154 (323)
                      ..+.|...|++++|+|++++||+|+.+ +.|++|+..... .....|...|.+++|+| |++|++++.|++|+   +||+
T Consensus        12 ~~~gh~~~V~~lafspdg~~lAsgs~D-g~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~---lWd~   86 (902)
T 2oaj_A           12 NKYGMSSKPIAAAFDFTQNLLAIATVT-GEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVY---VLSL   86 (902)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETT-SEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEE---EEET
T ss_pred             cccCCCCCcEEEEECCCCCEEEEEeCC-CEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEE---EEEC
Confidence            345689999999999999999998877 699999987653 23345788999999999 88999999999999   9999


Q ss_pred             C-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeee------------ecCCCCccEEEEEEcCC-CC
Q psy11524        155 D-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHS------------LDKPDTGSVYDLVWSND-AT  219 (323)
Q Consensus       155 ~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~------------~~~~~~~~v~~~~~~~~-~~  219 (323)
                      + ++.+..+. +...|++++|+|+++++++|+.+ .|++||+++....            ...+|.+.|.+++|+|+ +.
T Consensus        87 ~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~  165 (902)
T 2oaj_A           87 YSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG  165 (902)
T ss_dssp             TTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE
T ss_pred             CCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCC
Confidence            6 55666665 66889999999999999999996 9999999865432            23568889999999996 57


Q ss_pred             EEEEEecCc-EEEEEcCCCceeeeecCCCC------------------ccceEEEEEccCCCCccceEEEEeCCCCeEEE
Q psy11524        220 QIAGACANV-IHIFDISSSSSSNVTAPLSH------------------SHEITQLAVNQTGSLQERHVAFIDKNRDLYLS  280 (323)
Q Consensus       220 ~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~------------------~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~  280 (323)
                      .|++++.|+ | +||+++++.+..  +..|                  ...|.+++|+|+|    ..|++++.++.+++|
T Consensus       166 ~l~~g~~dg~v-lWd~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg----~~lasgs~Dg~i~lW  238 (902)
T 2oaj_A          166 TVLISYEYVTL-TYSLVENEIKQS--FIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS----LHIITIHEDNSLVFW  238 (902)
T ss_dssp             EEEEECSSCEE-EEETTTTEEEEE--ECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS----SEEEEEETTCCEEEE
T ss_pred             EEEEEeCCCcE-EEECCCCceEEE--EecccCCcCCCcccccccccccCCCeEEEEEcCCC----CEEEEEECCCeEEEE
Confidence            899999999 9 999999988876  3333                  4679999999999    889999999999999


Q ss_pred             ecccc--c----C---CC-------------CccceeEEEEee----CC-CeeEeeecC-----CeEEEEEe
Q psy11524        281 MWSHS--L----D---KP-------------DTGSVYDLVWSS----DA-TQIAGACAN-----GSLLLGTI  320 (323)
Q Consensus       281 ~~~~~--~----~---~~-------------~~~~v~~~~~s~----~g-~~l~s~~~d-----g~i~~~~l  320 (323)
                      ++...  +    .   ..             |...|.+++|++    ++ ..|++|+.|     ..+.+|++
T Consensus       239 d~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          239 DANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             ETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             ECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence            88653  1    1   11             245799999965    43 467777666     37888874

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.2e-30  Score=213.41  Aligned_cols=252  Identities=11%  Similarity=0.094  Sum_probs=185.2

Q ss_pred             eEeccCCcceeeeeeccccccccceeeecCC-------CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--------
Q psy11524         50 YPISPYISVLHSYAASHSWPQALSLCRTLNV-------SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--------  114 (323)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--------  114 (323)
                      ..+.+++    ..+++++.|++.++|..-..       ...|.++.|+|+   +++++.+ +.+++|+....        
T Consensus        42 ~~~~~d~----~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D-~~i~~w~~~~~~~~~~~~~  113 (343)
T 3lrv_A           42 KSMYYDK----WVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPC-NRLLLLYPGNQITILDSKT  113 (343)
T ss_dssp             SSSSEEE----EEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECST-TEEEEEETTTEEEEEETTT
T ss_pred             hhhcCCC----CEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCC-CeEEEEEccCceEEeecCC
Confidence            3444555    45666666666666554321       356777888888   7777666 59999976533        


Q ss_pred             ---eeEe-eccCCCeEEEEECC--CCCEEEEEcCCCceEeeeEEeCCC-CeeeEe-ecCCCceeEEEEecCCCEEEEEeC
Q psy11524        115 ---ATKW-QAHDGLILKVAWCS--STDLILSGGEDCKYKASFVWDTDG-RQLYSS-LTHDHPISSLAWAPGGDMFAVGSY  186 (323)
Q Consensus       115 ---~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~i~v~d~~~-~~~~~~-~~~~~~v~~~~~~p~~~~l~~~~~  186 (323)
                         +... ..|.+.|.+++|+|  +++++++++.||+|+   +||++. +..... ..+...+.+++|+|++.+|++|+.
T Consensus       114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~---~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~  190 (343)
T 3lrv_A          114 NKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIG---FQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSP  190 (343)
T ss_dssp             CCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEE---EEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECT
T ss_pred             cceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEE---EEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcC
Confidence               1222 25668899999999  999999999999999   999964 443333 235567999999999999999998


Q ss_pred             C-eEEEEeCCCC-ee-eecCC-CCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCC---CccceE--EEE
Q psy11524        187 N-TLRLCDKVGW-SH-SLDKP-DTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLS---HSHEIT--QLA  256 (323)
Q Consensus       187 ~-~i~i~d~~~~-~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~---~~~~v~--~~~  256 (323)
                      | .|++||+++. .. ..+.. |...|.+++|+|+|.+|++++ ++ |++||+++++....  +..   +...+.  +++
T Consensus       191 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~  267 (343)
T 3lrv_A          191 DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLA--YPTYTIPEFKTGTVTYD  267 (343)
T ss_dssp             TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBS--SCCCBC-----CCEEEE
T ss_pred             CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCccee--ecccccccccccceEEE
Confidence            6 9999998854 33 45566 899999999999999999999 66 99999999877654  332   333443  699


Q ss_pred             EccCCCCccceEEEEeC-CCCeEEEecccccCCCCccceeEEEEee---CCCeeEeeecCCeEEEEE
Q psy11524        257 VNQTGSLQERHVAFIDK-NRDLYLSMWSHSLDKPDTGSVYDLVWSS---DATQIAGACANGSLLLGT  319 (323)
Q Consensus       257 ~~p~g~~~d~~l~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~g~~l~s~~~dg~i~~~~  319 (323)
                      |+|++    .+++++.. ++.+.+|++..........++..++|+|   +++.|++++.||.+.++-
T Consensus       268 ~~~~g----~~l~~~s~~d~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  330 (343)
T 3lrv_A          268 IDDSG----KNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAIL  330 (343)
T ss_dssp             ECTTS----SEEEEEETTTTEEEEEEECTTTCSEEEEEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred             ECCCC----CEEEEecCCCCcEEEEEEcccccceEecCceeEecCccccccceeEEEecCCceEEEE
Confidence            99999    88888887 8889999886521111124567889998   888999999999988764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=5.2e-28  Score=209.00  Aligned_cols=265  Identities=8%  Similarity=-0.036  Sum_probs=197.8

Q ss_pred             ceeEeeEeccCCcceeeeeecc---cccc-ccceeeec------CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc
Q psy11524         45 GTVINYPISPYISVLHSYAASH---SWPQ-ALSLCRTL------NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK  114 (323)
Q Consensus        45 ~~v~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~------~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~  114 (323)
                      ..+.++.|+|++..++....++   .||. +.+..+..      .|...|.+++|+|+++.+++++.+ +.|++|+....
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d-~~v~~~d~~~~  201 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA-NAVHVFDLKTL  201 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG-TEEEEEETTTC
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC-CEEEEEECCCc
Confidence            3456899999663332221111   2442 23333321      377899999999999988887666 69999998764


Q ss_pred             --eeEeeccCCCeEEEEECCCCCEEE-EEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEe------
Q psy11524        115 --ATKWQAHDGLILKVAWCSSTDLIL-SGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGS------  185 (323)
Q Consensus       115 --~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~------  185 (323)
                        ...+..|...+.+++|+|+++.++ +++.++.|+   +||++.............+.+++|+|+++.+++++      
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~---~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~  278 (433)
T 3bws_A          202 AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDIS---VIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQ  278 (433)
T ss_dssp             CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEE---EEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTT
T ss_pred             eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEE---EEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCcc
Confidence              566778899999999999999875 555799999   99996444433333456699999999999998887      


Q ss_pred             --CC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEE-EEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccC
Q psy11524        186 --YN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQI-AGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQT  260 (323)
Q Consensus       186 --~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~  260 (323)
                        .+ .|++||+++........+...+.+++|+|+++.+ ++++.++ |++||+.+++.+..+   .+...+.+++|+|+
T Consensus       279 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~---~~~~~~~~~~~s~d  355 (433)
T 3bws_A          279 ESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI---PVFDKPNTIALSPD  355 (433)
T ss_dssp             CSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE---ECSSSEEEEEECTT
T ss_pred             ccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe---cCCCCCCeEEEcCC
Confidence              34 8999999866554444566789999999999765 5557788 999999999888762   35677899999999


Q ss_pred             CCCccceEEEEeC---------------CCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeec-CCeEEEEEe
Q psy11524        261 GSLQERHVAFIDK---------------NRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACA-NGSLLLGTI  320 (323)
Q Consensus       261 g~~~d~~l~~~~~---------------~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~-dg~i~~~~l  320 (323)
                      +    +.+.+.+.               ++.+.+|+....    .... ...+.+++|+|+|++|++++. |+.|++|++
T Consensus       356 g----~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~  430 (433)
T 3bws_A          356 G----KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRR  430 (433)
T ss_dssp             S----SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             C----CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence            8    66666655               347778877654    2222 457899999999999988775 999999998


Q ss_pred             e
Q psy11524        321 I  321 (323)
Q Consensus       321 ~  321 (323)
                      .
T Consensus       431 ~  431 (433)
T 3bws_A          431 D  431 (433)
T ss_dssp             T
T ss_pred             c
Confidence            5

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-29  Score=233.04  Aligned_cols=238  Identities=14%  Similarity=0.177  Sum_probs=190.7

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeecc---cccc---ccceeeec-CCCCCEEEEEEcCC--CCeEEEEeeCCeEEEE
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASH---SWPQ---ALSLCRTL-NVSPPVYSAAWSPD--SNKVLLTQAKSLVIKP  108 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~-~~~~~v~~~~~sp~--~~~l~~~~~~~~~v~~  108 (323)
                      ..+.+|.+.|.++.|+|++..++....++   .|+.   +.+....+ .|...|++++|+|+  +++|++++.+ +.|++
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D-g~I~v   81 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-GKVLI   81 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT-SCEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC-CeEEE
Confidence            45789999999999999996665554444   2542   22333344 38999999999998  9999998877 69999


Q ss_pred             eCCCCc----eeEeeccCCCeEEEEECCC--CCEEEEEcCCCceEeeeEEeCCCC---eeeEeecCCCceeEEEEec---
Q psy11524        109 LSPNNK----ATKWQAHDGLILKVAWCSS--TDLILSGGEDCKYKASFVWDTDGR---QLYSSLTHDHPISSLAWAP---  176 (323)
Q Consensus       109 ~~~~~~----~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~i~v~d~~~~---~~~~~~~~~~~v~~~~~~p---  176 (323)
                      |+..+.    ...+..|...|.+++|+|+  ++.+++++.||.|+   +||+...   ....+..|...|.+++|+|   
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~---vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~  158 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS---VVEFKENGTTSPIIIDAHAIGVNSASWAPATI  158 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE---EEECCSSSCCCCEEEECCSSCEEEEEECCCC-
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEE---EEEeecCCCcceeEeecCCCceEEEEecCccc
Confidence            998765    4566789999999999999  99999999999999   9999633   4556778999999999999   


Q ss_pred             ----------CCCEEEEEeCC-eEEEEeCCCC-----eeeecCCCCccEEEEEEcCC---CCEEEEEecCc-EEEEEcCC
Q psy11524        177 ----------GGDMFAVGSYN-TLRLCDKVGW-----SHSLDKPDTGSVYDLVWSND---ATQIAGACANV-IHIFDISS  236 (323)
Q Consensus       177 ----------~~~~l~~~~~~-~i~i~d~~~~-----~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~-i~iwd~~~  236 (323)
                                ++.++++++.| .|++||++..     ....+.+|...|.+++|+|+   +++|++++.|+ |++||+++
T Consensus       159 ~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~  238 (753)
T 3jro_A          159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  238 (753)
T ss_dssp             --------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred             ccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence                      58999999996 9999998643     23456789999999999999   89999999999 99999998


Q ss_pred             Ccee---eeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecc
Q psy11524        237 SSSS---NVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWS  283 (323)
Q Consensus       237 ~~~~---~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~  283 (323)
                      ++..   .......|...|.+++|+|++    ..+++++.++.+.+|++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~v~~l~~spdg----~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          239 EQGPWKKTLLKEEKFPDVLWRASWSLSG----NVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             SSSCCBCCBSSSSCCSSCCCCEEECTTT----CCEEEECSSSCEECCBCC
T ss_pred             CCCcceeEEeccCCCCCceEEEEEcCCC----CEEEEEcCCCEEEEEecC
Confidence            7421   111145688899999999999    788888889999999876

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-29  Score=212.35  Aligned_cols=218  Identities=8%  Similarity=-0.041  Sum_probs=171.4

Q ss_pred             EEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCC--------
Q psy11524         88 AWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGR--------  157 (323)
Q Consensus        88 ~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~--------  157 (323)
                      .+.+++..+++|+.+ +.|++||....  ...+.  ...|.++.|+|+   +++++.|++|+   +|+.++.        
T Consensus        43 ~~~~d~~~l~sg~~D-g~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~---~w~~~~~~~~~~~~~  113 (343)
T 3lrv_A           43 SMYYDKWVCMCRCED-GALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLL---LLYPGNQITILDSKT  113 (343)
T ss_dssp             SSSEEEEEEEEEEET-TEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEE---EEETTTEEEEEETTT
T ss_pred             hhcCCCCEEEEECCC-CcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEE---EEEccCceEEeecCC
Confidence            345678889998888 59999998765  33343  466778888887   99999999999   9976432        


Q ss_pred             --eeeEee-cCCCceeEEEEec--CCCEEEEEeCC-eEEEEeCCCC-eeeec-CCCCccEEEEEEcCCCCEEEEEecCc-
Q psy11524        158 --QLYSSL-THDHPISSLAWAP--GGDMFAVGSYN-TLRLCDKVGW-SHSLD-KPDTGSVYDLVWSNDATQIAGACANV-  228 (323)
Q Consensus       158 --~~~~~~-~~~~~v~~~~~~p--~~~~l~~~~~~-~i~i~d~~~~-~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~-  228 (323)
                        .+..+. .|..+|.+++|+|  +++++++++.| .|++||+++. ..... ..+...+.+++|+|+|.+|++|+.|+ 
T Consensus       114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~  193 (343)
T 3lrv_A          114 NKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI  193 (343)
T ss_dssp             CCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSC
T ss_pred             cceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCE
Confidence              233333 5667899999999  99999999996 9999998854 33333 34556799999999999999999999 


Q ss_pred             EEEEEcCCCcee-eeecCCC-CccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc--c--CC---CCcccee--EE
Q psy11524        229 IHIFDISSSSSS-NVTAPLS-HSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS--L--DK---PDTGSVY--DL  297 (323)
Q Consensus       229 i~iwd~~~~~~~-~~~~~~~-~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~--~--~~---~~~~~v~--~~  297 (323)
                      |++||+++++.+ ..  +.. |..+|.+++|+|++    ..+++++ ++.+.+|++...  .  ..   .|...+.  ++
T Consensus       194 i~iwd~~~~~~~~~~--~~~~h~~~v~~l~fs~~g----~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  266 (343)
T 3lrv_A          194 LDVYNLSSPDQASSR--FPVDEEAKIKEVKFADNG----YWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTY  266 (343)
T ss_dssp             EEEEESSCTTSCCEE--CCCCTTSCEEEEEECTTS----SEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEE
T ss_pred             EEEEECCCCCCCccE--EeccCCCCEEEEEEeCCC----CEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEE
Confidence            999999999877 55  566 89999999999998    7888888 559999998875  1  11   1234444  69


Q ss_pred             EEeeCCCeeEeeec-CCeEEEEEee
Q psy11524        298 VWSSDATQIAGACA-NGSLLLGTII  321 (323)
Q Consensus       298 ~~s~~g~~l~s~~~-dg~i~~~~l~  321 (323)
                      +|+|+|++|++++. |+.|++|++.
T Consensus       267 ~~~~~g~~l~~~s~~d~~i~v~~~~  291 (343)
T 3lrv_A          267 DIDDSGKNMIAYSNESNSLTIYKFD  291 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EECCCCCEEEEecCCCCcEEEEEEc
Confidence            99999999999998 9999999873

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=2.5e-28  Score=210.91  Aligned_cols=238  Identities=18%  Similarity=0.271  Sum_probs=191.3

Q ss_pred             eEeecccceeEeeEeccC-Ccceeeeeecc---ccccc-----------cceeeec-CCCCCEEEEEEcCCCC-eEEEEe
Q psy11524         38 LTIRRYDGTVINYPISPY-ISVLHSYAASH---SWPQA-----------LSLCRTL-NVSPPVYSAAWSPDSN-KVLLTQ  100 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~---~~~~~-----------~~~~~~~-~~~~~v~~~~~sp~~~-~l~~~~  100 (323)
                      .....|.+.|.++.|+|+ +..++....++   .|+..           ......+ .|...|++++|+|+++ +|++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            445689999999999997 54444433333   24422           2222222 4889999999999998 777776


Q ss_pred             eCCeEEEEeCCCCc---------eeEeeccCCCeEEEEECC-CCCEEEEEcCCCceEeeeEEeCCC----CeeeEeecCC
Q psy11524        101 AKSLVIKPLSPNNK---------ATKWQAHDGLILKVAWCS-STDLILSGGEDCKYKASFVWDTDG----RQLYSSLTHD  166 (323)
Q Consensus       101 ~~~~~v~~~~~~~~---------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~i~v~d~~~----~~~~~~~~~~  166 (323)
                      .+ +.|++|+....         ...+..|...|.+++|+| ++.+|++++.|+.|+   +||++.    +....+..|.
T Consensus       202 ~d-g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~---i~d~~~~~~~~~~~~~~~~~  277 (430)
T 2xyi_A          202 DD-HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM---IWDTRNNNTSKPSHTVDAHT  277 (430)
T ss_dssp             TT-SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEE---EEETTCSCSSSCSEEEECCS
T ss_pred             CC-CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEE---EEECCCCCCCcceeEeecCC
Confidence            65 69999998762         345668999999999999 678999999999999   999963    4667778899


Q ss_pred             CceeEEEEecCCC-EEEEEeCC-eEEEEeCCC--CeeeecCCCCccEEEEEEcCCCC-EEEEEecCc-EEEEEcCC----
Q psy11524        167 HPISSLAWAPGGD-MFAVGSYN-TLRLCDKVG--WSHSLDKPDTGSVYDLVWSNDAT-QIAGACANV-IHIFDISS----  236 (323)
Q Consensus       167 ~~v~~~~~~p~~~-~l~~~~~~-~i~i~d~~~--~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~-i~iwd~~~----  236 (323)
                      ..|++++|+|++. ++++++.+ .|++||++.  ..+..+..|...|.+++|+|+++ +|++++.|+ |++||+..    
T Consensus       278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~  357 (430)
T 2xyi_A          278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE  357 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence            9999999999887 58888886 999999875  34566777999999999999985 688999999 99999986    


Q ss_pred             ----------CceeeeecCCCCccceEEEEEccCCCCccc-eEEEEeCCCCeEEEecccc
Q psy11524        237 ----------SSSSNVTAPLSHSHEITQLAVNQTGSLQER-HVAFIDKNRDLYLSMWSHS  285 (323)
Q Consensus       237 ----------~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~-~l~~~~~~~~~~~~~~~~~  285 (323)
                                .+.+..  +.+|...|.+++|+|++    . .++..+.++.+.+|++...
T Consensus       358 ~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~p~~----~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          358 QSTEDAEDGPPELLFI--HGGHTAKISDFSWNPNE----PWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             CCHHHHHHCCTTEEEE--CCCCSSCEEEEEECSSS----TTEEEEEETTSEEEEEEECHH
T ss_pred             cCccccccCCcceEEE--cCCCCCCceEEEECCCC----CCEEEEEECCCCEEEeEcccc
Confidence                      244455  67889999999999998    5 8889999999999998764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=1.8e-28  Score=206.41  Aligned_cols=225  Identities=18%  Similarity=0.170  Sum_probs=173.8

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEeeccCCCeEEEEECCCCCEE-EEEcCCCceEeeeEEeCC-C
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLI-LSGGEDCKYKASFVWDTD-G  156 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~i~v~d~~-~  156 (323)
                      .|...|++++|+|||++|++|+.+  .+++|+..........+...+..+++.++++.+ ++++.|++|+   +||.. +
T Consensus        17 ~h~~~V~~v~fs~dg~~la~g~~~--~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~---iWd~~~~   91 (355)
T 3vu4_A           17 HVSNPVTDYEFNQDQSCLILSTLK--SFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVH---IWDDVKK   91 (355)
T ss_dssp             --CCCCCEEEECTTSSEEEEECSS--EEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEE---EEETTTT
T ss_pred             cCCCceEEEEECCCCCEEEEEcCC--EEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEE---EEECCCC
Confidence            389999999999999999987655  367998776543333333457888999988877 5677789999   99996 5


Q ss_pred             CeeeEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCC--eeeecCCCCccEEEEEEcCCCCEEEE--EecCc-EEE
Q psy11524        157 RQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGW--SHSLDKPDTGSVYDLVWSNDATQIAG--ACANV-IHI  231 (323)
Q Consensus       157 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~-i~i  231 (323)
                      +.+..+. +...|.+++|+++  .++++.++.|++||+...  .+..+..   ....+++++  .++++  ++.++ |++
T Consensus        92 ~~~~~~~-~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~i  163 (355)
T 3vu4_A           92 QDVSRIK-VDAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHI  163 (355)
T ss_dssp             EEEEEEE-CSSCEEEEEECSS--EEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEE
T ss_pred             cEEEEEE-CCCceEEEEEcCC--EEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEE
Confidence            5555554 6778999999876  456666679999998754  2222222   455667777  56666  47788 999


Q ss_pred             EEcCCCc---------------e-eeeecCCCCccceEEEEEccCCCCccceEEEEeCCCC-eEEEecccc----cCC-C
Q psy11524        232 FDISSSS---------------S-SNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRD-LYLSMWSHS----LDK-P  289 (323)
Q Consensus       232 wd~~~~~---------------~-~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~-~~~~~~~~~----~~~-~  289 (323)
                      ||+++++               + +..  +.+|...|.+++|+|++    ..++.++.++. +++|++...    ... +
T Consensus       164 wd~~~~~~~~~~~~~~~~~~~~p~~~~--~~~h~~~v~~~~~s~~g----~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g  237 (355)
T 3vu4_A          164 TKLQSSGSATTQDQGVQQKAILGKGVL--IKAHTNPIKMVRLNRKS----DMVATCSQDGTIIRVFKTEDGVLVREFRRG  237 (355)
T ss_dssp             EECCC------------------CCEE--ECCCSSCEEEEEECTTS----SEEEEEETTCSEEEEEETTTCCEEEEEECT
T ss_pred             EECCCCCccccccccccccccCcccEE--EEccCCceEEEEECCCC----CEEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence            9999865               1 445  68899999999999999    89999999998 999999865    222 3


Q ss_pred             -CccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        290 -DTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       290 -~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                       |...|.+++|+|+|++|++++.|++|++|++.+
T Consensus       238 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~  271 (355)
T 3vu4_A          238 LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN  271 (355)
T ss_dssp             TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence             889999999999999999999999999999853

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=5.8e-28  Score=205.93  Aligned_cols=239  Identities=13%  Similarity=0.111  Sum_probs=180.4

Q ss_pred             ccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEE-EEcCCCceE
Q psy11524         71 ALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLIL-SGGEDCKYK  147 (323)
Q Consensus        71 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~  147 (323)
                      +.++...+.+...+.+++|+|+|+++++++..++.|++||....  ...+. +...+.+++|+|++++|+ +++.++.|+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~~~~~~~~v~   99 (391)
T 1l0q_A           21 SNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP-AGSSPQGVAVSPDGKQVYVTNMASSTLS   99 (391)
T ss_dssp             TTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE-CCCCccceEECCCCCEEEEEECCCCEEE
Confidence            34455566666779999999999998666655579999998665  33444 444899999999999775 455679999


Q ss_pred             eeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEE-EEeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEE-EEE
Q psy11524        148 ASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFA-VGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQI-AGA  224 (323)
Q Consensus       148 ~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~  224 (323)
                         +||+..........+...+.+++|+|+++.++ +++.+ .|++||+.+............+.+++|+|++++| +++
T Consensus       100 ---v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~  176 (391)
T 1l0q_A          100 ---VIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVAN  176 (391)
T ss_dssp             ---EEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEE
T ss_pred             ---EEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEe
Confidence               99997555444444556789999999999874 55545 9999998765443322334567999999999988 566


Q ss_pred             ecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEe---CCCCeEEEecccc----cCCCCccceeE
Q psy11524        225 CANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFID---KNRDLYLSMWSHS----LDKPDTGSVYD  296 (323)
Q Consensus       225 ~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~---~~~~~~~~~~~~~----~~~~~~~~v~~  296 (323)
                      +.++ |++||+++++.+..   ..+...+.+++|+|++    ..+.+.+   .++.+.+|++...    .... ...+.+
T Consensus       177 ~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~g----~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~  248 (391)
T 1l0q_A          177 FDSMSISVIDTVTNSVIDT---VKVEAAPSGIAVNPEG----TKAYVTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAG  248 (391)
T ss_dssp             TTTTEEEEEETTTTEEEEE---EECSSEEEEEEECTTS----SEEEEEEECSSCCEEEEEETTTTEEEEEEEC-CSSEEE
T ss_pred             CCCCEEEEEECCCCeEEEE---EecCCCccceEECCCC----CEEEEEecCcCCCcEEEEECCCCeEEEEEec-CCCccE
Confidence            6778 99999999988776   2345678999999998    6676666   5677888887653    2222 345789


Q ss_pred             EEEeeCCCee-EeeecCCeEEEEEee
Q psy11524        297 LVWSSDATQI-AGACANGSLLLGTII  321 (323)
Q Consensus       297 ~~~s~~g~~l-~s~~~dg~i~~~~l~  321 (323)
                      ++|+|+|++| ++++.|+.|++|++.
T Consensus       249 ~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          249 IAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EEEccCCCEEEEEcCCCCEEEEEECC
Confidence            9999999977 677889999999974

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=3.2e-28  Score=210.61  Aligned_cols=221  Identities=18%  Similarity=0.257  Sum_probs=191.8

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-  155 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-  155 (323)
                      .|...|.++.+  +++++++|+.+ +.|++||..+.  ...+.+|.+.|.+++|  ++++|++|+.||.|+   +||++ 
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~d-g~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~---vwd~~~  202 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRD-NTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVR---VWDVNT  202 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESS-SCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEE---EEESSS
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCC-CeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEE---EEECCC
Confidence            36678998887  78999988777 69999998765  6678899999999998  788999999999999   99995 


Q ss_pred             CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-ee---eecCCCCccEEEEEEcCCCCEEEEEecCc-E
Q psy11524        156 GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-SH---SLDKPDTGSVYDLVWSNDATQIAGACANV-I  229 (323)
Q Consensus       156 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i  229 (323)
                      ++.+..+..|...|.+++|+  +..+++++.| .|++||++.. ..   ....+|...|.+++|  ++++|++++.|+ |
T Consensus       203 ~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i  278 (435)
T 1p22_A          203 GEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTI  278 (435)
T ss_dssp             CCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred             CcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeE
Confidence            77788888999999999997  4589999986 9999998743 22   466789999999999  678999999999 9


Q ss_pred             EEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCe
Q psy11524        230 HIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQ  305 (323)
Q Consensus       230 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~  305 (323)
                      ++||+++++.+..  +.+|...+.+++|+  +    ..+++++.++.+.+|++...    ....|...|.+++|  ++++
T Consensus       279 ~vwd~~~~~~~~~--~~~~~~~v~~~~~~--~----~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~  348 (435)
T 1p22_A          279 KVWNTSTCEFVRT--LNGHKRGIACLQYR--D----RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKR  348 (435)
T ss_dssp             EEEETTTCCEEEE--EECCSSCEEEEEEE--T----TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSE
T ss_pred             EEEECCcCcEEEE--EcCCCCcEEEEEeC--C----CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCE
Confidence            9999999999888  67899999999984  4    68899999999999998765    45668899999999  7889


Q ss_pred             eEeeecCCeEEEEEee
Q psy11524        306 IAGACANGSLLLGTII  321 (323)
Q Consensus       306 l~s~~~dg~i~~~~l~  321 (323)
                      |++|+.||.|++|++.
T Consensus       349 l~sg~~dg~i~vwd~~  364 (435)
T 1p22_A          349 IVSGAYDGKIKVWDLV  364 (435)
T ss_dssp             EEEEETTSCEEEEEHH
T ss_pred             EEEEeCCCcEEEEECC
Confidence            9999999999999973

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=1.3e-27  Score=205.75  Aligned_cols=234  Identities=17%  Similarity=0.228  Sum_probs=186.8

Q ss_pred             EeecccceeEeeEeccCCcceeeeeecc---ccc-cccceeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCC
Q psy11524         39 TIRRYDGTVINYPISPYISVLHSYAASH---SWP-QALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN  113 (323)
Q Consensus        39 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~  113 (323)
                      .+.+|...|.+++|+|+|..++....++   .|+ .+.+..+.+ .|...+.+++++  +..|++++.+ +.+++|+...
T Consensus       142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d-~~i~~~d~~~  218 (420)
T 4gga_A          142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRS-GHIHHHDVRV  218 (420)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETT-SEEEEEETTS
T ss_pred             EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCC-CceeEeeecc
Confidence            4557888999999999995554433333   243 222333333 388899988875  6788887766 5999998765


Q ss_pred             c---eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC-----CeeeEeecCCCceeEEEEecCC-CEEEEE
Q psy11524        114 K---ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG-----RQLYSSLTHDHPISSLAWAPGG-DMFAVG  184 (323)
Q Consensus       114 ~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~-----~~~~~~~~~~~~v~~~~~~p~~-~~l~~~  184 (323)
                      .   ...+..|...+..+.|+|+++++++++.|+.++   +|+...     ..+.....+...|.+++|+|++ ..++++
T Consensus       219 ~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~---i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~  295 (420)
T 4gga_A          219 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVN---VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG  295 (420)
T ss_dssp             SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE---EEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEE
T ss_pred             cceeeEEecccccceeeeeecCCCCeeeeeeccccce---EEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEE
Confidence            4   567889999999999999999999999999999   999852     2345667788999999999964 455554


Q ss_pred             e--CC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEe--cCc-EEEEEcCCCceeeeecCCCCccceEEEEEc
Q psy11524        185 S--YN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGAC--ANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVN  258 (323)
Q Consensus       185 ~--~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  258 (323)
                      +  .| .|++||+.+........+...+.++.|+|+++.+++++  .|+ |++||+.+++++.+  +.+|...|.+++|+
T Consensus       296 ~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~--l~gH~~~V~~l~~s  373 (420)
T 4gga_A          296 GGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE--LKGHTSRVLSLTMS  373 (420)
T ss_dssp             ECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE--ECCCSSCEEEEEEC
T ss_pred             eecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEE--EcCCCCCEEEEEEc
Confidence            4  36 99999998665443334567799999999999988876  678 99999999999998  78999999999999


Q ss_pred             cCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        259 QTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       259 p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      |+|    ..|++++.|+.+++|++..
T Consensus       374 pdg----~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          374 PDG----ATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             TTS----SCEEEEETTTEEEEECCSC
T ss_pred             CCC----CEEEEEecCCeEEEEECCC
Confidence            999    8999999999999999865

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=1.3e-27  Score=204.43  Aligned_cols=235  Identities=17%  Similarity=0.222  Sum_probs=185.5

Q ss_pred             CCCCCEEEEEEcC-CCCeEEEEeeCCeEEEEeCCCCc--eeEe-------------eccCCCeEEEEECC-CCCEEEEEc
Q psy11524         79 NVSPPVYSAAWSP-DSNKVLLTQAKSLVIKPLSPNNK--ATKW-------------QAHDGLILKVAWCS-STDLILSGG  141 (323)
Q Consensus        79 ~~~~~v~~~~~sp-~~~~l~~~~~~~~~v~~~~~~~~--~~~~-------------~~~~~~v~~~~~~~-~~~~l~~~~  141 (323)
                      .|.+.|++++|+| ++++|++++.+ +.|++|+....  ...+             ..|...|.+++|+| ++.+|++++
T Consensus        41 ~h~~~v~~~~~s~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  119 (408)
T 4a11_B           41 IHGGGINTLDIEPVEGRYMLSGGSD-GVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS  119 (408)
T ss_dssp             CCSSCEEEEEECTTTCCEEEEEETT-SCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred             ccCCcEEEEEEecCCCCEEEEEcCC-CeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence            3999999999999 99999998777 69999998765  2222             24999999999999 778999999


Q ss_pred             CCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecC---CCEEEEEeCC-eEEEEeCCC-CeeeecCCCCccEEEEEEcC
Q psy11524        142 EDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPG---GDMFAVGSYN-TLRLCDKVG-WSHSLDKPDTGSVYDLVWSN  216 (323)
Q Consensus       142 ~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~---~~~l~~~~~~-~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~  216 (323)
                      .||.|+   +||++.........+...+.++.|+|.   +.++++++.+ .|++||++. .....+..|...|.+++|+|
T Consensus       120 ~d~~i~---iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~  196 (408)
T 4a11_B          120 FDKTLK---VWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP  196 (408)
T ss_dssp             TTSEEE---EEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS
T ss_pred             CCCeEE---EeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC
Confidence            999999   999986655555557888999999984   4589999986 999999874 45567778999999999999


Q ss_pred             CCC-EEEEEecCc-EEEEEcCCCc-eeeee-------------cCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEE
Q psy11524        217 DAT-QIAGACANV-IHIFDISSSS-SSNVT-------------APLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLS  280 (323)
Q Consensus       217 ~~~-~l~~~~~d~-i~iwd~~~~~-~~~~~-------------~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~  280 (323)
                      +++ .|++++.|+ |++||++++. .+..+             ....|...|.+++|+|++    ..+++++.++.+.+|
T Consensus       197 ~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~vw  272 (408)
T 4a11_B          197 RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG----LHLLTVGTDNRMRLW  272 (408)
T ss_dssp             SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS----SEEEEEETTSCEEEE
T ss_pred             CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC----CEEEEecCCCeEEEE
Confidence            998 588999999 9999998765 22220             015688899999999998    899999999999999


Q ss_pred             eccccc----CC-----CCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        281 MWSHSL----DK-----PDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       281 ~~~~~~----~~-----~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      ++....    ..     .....+........+..++.++.|+.|++|++.
T Consensus       273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~  322 (408)
T 4a11_B          273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVY  322 (408)
T ss_dssp             ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETT
T ss_pred             ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECc
Confidence            987641    00     101122222223345678888899999999974

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=4.6e-28  Score=196.71  Aligned_cols=240  Identities=14%  Similarity=0.110  Sum_probs=169.0

Q ss_pred             eeeeEeecccceeEeeEeccCCcceeeeeeccccccccceeeecC--CCCCEEEEEEcCC----CCeEEEEeeCCeEEEE
Q psy11524         35 KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLN--VSPPVYSAAWSPD----SNKVLLTQAKSLVIKP  108 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~----~~~l~~~~~~~~~v~~  108 (323)
                      +...+..+|+.+|..+.+.||..-+.              +-.++  +...|.+++++|+    ++.++.++.+   +.+
T Consensus        77 ~~~~~~~~~~~~v~~~~~~~~~~~~~--------------~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~---~~v  139 (356)
T 2w18_A           77 EKLYTWHFAEVPVLQIVPVPDVYNLV--------------CVALGNLEIREIRALFCSSDDESEKQVLLKSGNI---KAV  139 (356)
T ss_dssp             EEEEEEECCSSCEEEECCCTTCCSCE--------------EEEECSSSEEEEEEECC------CCEEEEEEEEE---EEE
T ss_pred             eeeEEEeccCceeEEEEEcCccccee--------------eeeeccccccceEEEEECCCccccccEEEeCCCe---EEE
Confidence            34456777777888888887653221              12222  4567888888888    7777775522   344


Q ss_pred             eCCCCceeEeeccCCCeEEEEECCCCCEEEEEc--CCCceEeeeEEeCC--CCeeeEeecCCCceeEEEEec---CCCEE
Q psy11524        109 LSPNNKATKWQAHDGLILKVAWCSSTDLILSGG--EDCKYKASFVWDTD--GRQLYSSLTHDHPISSLAWAP---GGDMF  181 (323)
Q Consensus       109 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~i~v~d~~--~~~~~~~~~~~~~v~~~~~~p---~~~~l  181 (323)
                      |                 ++   ++++++.+++  .|+.|+   +|++.  ++.+..+..|...+..++|+|   ++..|
T Consensus       140 ~-----------------~l---~~g~lv~ss~~g~d~~V~---~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~L  196 (356)
T 2w18_A          140 L-----------------GL---TKRRLVSSSGTLSDQQVE---VMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEAL  196 (356)
T ss_dssp             E-----------------EE---TTTEEEEEESSSTTCEEE---EEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEE
T ss_pred             E-----------------ec---CCCcEEEecccCCCCcEE---EEEECCCCceeeeeccCCCceeeEEeeccCCCCceE
Confidence            4                 22   4666666644  589999   99983  677778888999999999999   77999


Q ss_pred             EEEeCC-eEEEEeCC-CCeeeecCCCC---ccEEEEEEcCCCCEE------------EEEecCc-EEEEEcCCCceeeee
Q psy11524        182 AVGSYN-TLRLCDKV-GWSHSLDKPDT---GSVYDLVWSNDATQI------------AGACANV-IHIFDISSSSSSNVT  243 (323)
Q Consensus       182 ~~~~~~-~i~i~d~~-~~~~~~~~~~~---~~v~~~~~~~~~~~l------------~~~~~d~-i~iwd~~~~~~~~~~  243 (323)
                      ++++.| +|+|||++ ++.+..+.+|.   ..+.+++|+|+|+++            ++|+.|+ |++||..+++.+..+
T Consensus       197 aSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~  276 (356)
T 2w18_A          197 LGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVM  276 (356)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEE
T ss_pred             EEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEE
Confidence            999997 99999988 45566665543   357788999999987            5577889 999999999877652


Q ss_pred             c---CCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCcccee-EEEEeeCCCeeEeeecCCeE
Q psy11524        244 A---PLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVY-DLVWSSDATQIAGACANGSL  315 (323)
Q Consensus       244 ~---~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~-~~~~s~~g~~l~s~~~dg~i  315 (323)
                      .   ..+|...+.+..++  +    ..++.++.|+.+++|++..+    .+++|...+. .++|||||++|++|+.|++|
T Consensus       277 ~~~~p~Gh~~~~lsg~~s--g----~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TI  350 (356)
T 2w18_A          277 LYCLPPGQAGRFLEGDVK--D----HCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNI  350 (356)
T ss_dssp             EECCCTTCCCCEEEEEEE--T----TEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCE
T ss_pred             EeeccCCCcceeEccccC--C----CEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence            1   13555444444443  4    57778888888888888775    4455666554 68999999999999999999


Q ss_pred             EEEEe
Q psy11524        316 LLGTI  320 (323)
Q Consensus       316 ~~~~l  320 (323)
                      +||++
T Consensus       351 klWd~  355 (356)
T 2w18_A          351 FVYHY  355 (356)
T ss_dssp             EEEEE
T ss_pred             EEecC
Confidence            99996

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=2.3e-26  Score=198.65  Aligned_cols=236  Identities=10%  Similarity=0.067  Sum_probs=182.7

Q ss_pred             eeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--ee-----EeeccCCCeEEEEECCCCCEEEEEcCCCce
Q psy11524         74 LCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--AT-----KWQAHDGLILKVAWCSSTDLILSGGEDCKY  146 (323)
Q Consensus        74 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  146 (323)
                      ....+.....+.+++|+|++ .+++++..++.|++||..+.  ..     .+..|...|.+++|+|+++++++++.|+.|
T Consensus       115 ~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v  193 (433)
T 3bws_A          115 FISRFKTGFQPKSVRFIDNT-RLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAV  193 (433)
T ss_dssp             EEEEEECSSCBCCCEESSSS-EEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEE
T ss_pred             EEEEEcCCCCceEEEEeCCC-eEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEE
Confidence            34444556677799999954 45555555568999998765  22     234788899999999999999999999999


Q ss_pred             EeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEe-CC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEE
Q psy11524        147 KASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGS-YN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAG  223 (323)
Q Consensus       147 ~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  223 (323)
                      +   +||++ ++....+..+...+.+++|+|+++.+++++ .+ .|++||+++............+.+++|+|+|++|++
T Consensus       194 ~---~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  270 (433)
T 3bws_A          194 H---VFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYI  270 (433)
T ss_dssp             E---EEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEE
T ss_pred             E---EEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEE
Confidence            9   99996 567777778888999999999999886666 45 999999886544433334566999999999999998


Q ss_pred             Ee--------cCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceE-EEEeCCCCeEEEecccc----cCCC
Q psy11524        224 AC--------ANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHV-AFIDKNRDLYLSMWSHS----LDKP  289 (323)
Q Consensus       224 ~~--------~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l-~~~~~~~~~~~~~~~~~----~~~~  289 (323)
                      ++        .|+ |++||+++++.+..   ..+...+..++|+|++    +.+ .....++.+.+|++...    ... 
T Consensus       271 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~~g----~~l~~~~~~~~~v~v~d~~~~~~~~~~~-  342 (433)
T 3bws_A          271 AQFSASNQESGGGRLGIYSMDKEKLIDT---IGPPGNKRHIVSGNTE----NKIYVSDMCCSKIEVYDLKEKKVQKSIP-  342 (433)
T ss_dssp             EEEESCTTCSCCEEEEEEETTTTEEEEE---EEEEECEEEEEECSST----TEEEEEETTTTEEEEEETTTTEEEEEEE-
T ss_pred             EECCCCccccCCCeEEEEECCCCcEEee---ccCCCCcceEEECCCC----CEEEEEecCCCEEEEEECCCCcEEEEec-
Confidence            88        488 99999999887775   3455688999999998    444 33456666777776543    111 


Q ss_pred             CccceeEEEEeeCCCeeEeeec---------------CCeEEEEEee
Q psy11524        290 DTGSVYDLVWSSDATQIAGACA---------------NGSLLLGTII  321 (323)
Q Consensus       290 ~~~~v~~~~~s~~g~~l~s~~~---------------dg~i~~~~l~  321 (323)
                      +...+.+++|+|+|++|++++.               ||.|++|++.
T Consensus       343 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~  389 (433)
T 3bws_A          343 VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT  389 (433)
T ss_dssp             CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred             CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECC
Confidence            3677899999999998888776               5799999874

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=1.2e-26  Score=199.15  Aligned_cols=215  Identities=16%  Similarity=0.090  Sum_probs=174.6

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCC--eEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEE-EEcCCCc--eEeeeEE
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKS--LVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLIL-SGGEDCK--YKASFVW  152 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~--~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--i~~i~v~  152 (323)
                      .|...+.+++|+|+|++|++++.++  ..|++||..+. ...+..|...+.+++|+|||+.|+ +++.++.  |.   +|
T Consensus       176 ~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~---~~  252 (415)
T 2hqs_A          176 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY---VM  252 (415)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE---EE
T ss_pred             CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEE---EE
Confidence            4788999999999999999998663  48999998765 556778888999999999999887 6666655  66   99


Q ss_pred             eCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC-C---eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecC-
Q psy11524        153 DTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-N---TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN-  227 (323)
Q Consensus       153 d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~---~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-  227 (323)
                      |+.+.....+..+...+.+++|+|||++|++++. +   .|++||+.+.....+..+...+.+++|+|+|++|++++.+ 
T Consensus       253 d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~  332 (415)
T 2hqs_A          253 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG  332 (415)
T ss_dssp             ETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECS
T ss_pred             ECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcC
Confidence            9987777788888889999999999999988876 3   6888898876555555577789999999999999988864 


Q ss_pred             --c-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCC---CeEEEecccc---cCCCCccceeEEE
Q psy11524        228 --V-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNR---DLYLSMWSHS---LDKPDTGSVYDLV  298 (323)
Q Consensus       228 --~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~---~~~~~~~~~~---~~~~~~~~v~~~~  298 (323)
                        . |++||+.+++...   +..+. .+.+++|+|+|    +.|++...++   .+++|++...   ....|.+.|.+++
T Consensus       333 g~~~i~~~d~~~~~~~~---l~~~~-~~~~~~~spdg----~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~  404 (415)
T 2hqs_A          333 GQQHIAKQDLATGGVQV---LSSTF-LDETPSLAPNG----TMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPA  404 (415)
T ss_dssp             SCEEEEEEETTTCCEEE---CCCSS-SCEEEEECTTS----SEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEE
T ss_pred             CceEEEEEECCCCCEEE---ecCCC-CcCCeEEcCCC----CEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCc
Confidence              5 9999999887743   45554 89999999999    7777766555   5777776654   4556788999999


Q ss_pred             EeeCCC
Q psy11524        299 WSSDAT  304 (323)
Q Consensus       299 ~s~~g~  304 (323)
                      |+|.-.
T Consensus       405 ~~~~~~  410 (415)
T 2hqs_A          405 WSPYLH  410 (415)
T ss_dssp             ECCCCC
T ss_pred             cccccc
Confidence            999743

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=8e-26  Score=192.67  Aligned_cols=235  Identities=14%  Similarity=0.071  Sum_probs=174.6

Q ss_pred             eEeecccceeEeeEeccCCcceee-eeecc---ccc-cccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCC
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHS-YAASH---SWP-QALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPN  112 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~---~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~  112 (323)
                      ..+..|. .+.++.|+|++..++. ...++   .|| .+.++...+.+...+.+++|+|++++|++++.+++.|++||..
T Consensus        26 ~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~  104 (391)
T 1l0q_A           26 ATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT  104 (391)
T ss_dssp             EEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECC
Confidence            3445554 4789999999975421 11222   355 3555566666677999999999999998877666799999988


Q ss_pred             Cc-eeEeeccCCCeEEEEECCCCCEE-EEEcCCCceEeeeEEeCCC-CeeeEeecCCCceeEEEEecCCCEEEEE-eCC-
Q psy11524        113 NK-ATKWQAHDGLILKVAWCSSTDLI-LSGGEDCKYKASFVWDTDG-RQLYSSLTHDHPISSLAWAPGGDMFAVG-SYN-  187 (323)
Q Consensus       113 ~~-~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~i~v~d~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~~-  187 (323)
                      .. ......+...+.+++|+|+++.+ ++++.++.|+   +||+.. +....+.. ...+.+++|+|+++.++++ +.+ 
T Consensus       105 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~---~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~  180 (391)
T 1l0q_A          105 SNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVS---VINTVTKAVINTVSV-GRSPKGIAVTPDGTKVYVANFDSM  180 (391)
T ss_dssp             TTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEE---EEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTT
T ss_pred             CCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEE---EEECCCCcEEEEEec-CCCcceEEECCCCCEEEEEeCCCC
Confidence            66 33333455678999999999977 6888899999   999964 44444444 4567999999999988544 445 


Q ss_pred             eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEe---cCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCC
Q psy11524        188 TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGAC---ANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSL  263 (323)
Q Consensus       188 ~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~  263 (323)
                      .|++||+++........+...+.+++|+|+|++|++++   .++ |++||+++++.+..  +..+ ..+.+++|+|++  
T Consensus       181 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~--~~~~-~~~~~~~~s~dg--  255 (391)
T 1l0q_A          181 SISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITAR--IPVG-PDPAGIAVTPDG--  255 (391)
T ss_dssp             EEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEE--EECC-SSEEEEEECTTS--
T ss_pred             EEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEE--EecC-CCccEEEEccCC--
Confidence            99999998765544444667899999999999999888   577 99999999988877  3444 357899999998  


Q ss_pred             ccceE-EEEeCCCCeEEEeccc
Q psy11524        264 QERHV-AFIDKNRDLYLSMWSH  284 (323)
Q Consensus       264 ~d~~l-~~~~~~~~~~~~~~~~  284 (323)
                        +.+ .....++.+.+|++..
T Consensus       256 --~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          256 --KKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             --SEEEEEETTTTEEEEEETTT
T ss_pred             --CEEEEEcCCCCEEEEEECCC
Confidence              555 3445567777777654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=1.7e-25  Score=191.97  Aligned_cols=218  Identities=9%  Similarity=0.066  Sum_probs=173.8

Q ss_pred             CCeEEEEeeCC-----eEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCC---ceEeeeEEeCCCCeeeEee
Q psy11524         93 SNKVLLTQAKS-----LVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDC---KYKASFVWDTDGRQLYSSL  163 (323)
Q Consensus        93 ~~~l~~~~~~~-----~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~i~v~d~~~~~~~~~~  163 (323)
                      +..+++++.+.     +.|++||..+. ...+..|...+.+++|+|||++|++++.++   .|+   +||+++.....+.
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~---~~d~~tg~~~~l~  219 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALV---IQTLANGAVRQVA  219 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEE---EEETTTCCEEEEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEE---EEECCCCcEEEee
Confidence            67777776642     69999998765 677888999999999999999999999875   788   9999766666778


Q ss_pred             cCCCceeEEEEecCCCEEEE-EeCC---eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEec-Cc---EEEEEcC
Q psy11524        164 THDHPISSLAWAPGGDMFAV-GSYN---TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACA-NV---IHIFDIS  235 (323)
Q Consensus       164 ~~~~~v~~~~~~p~~~~l~~-~~~~---~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~---i~iwd~~  235 (323)
                      .+...+.+++|+|||+.|+. ++.+   .|++||+.+.....+..+...+.+++|+|||++|++++. ++   |++||+.
T Consensus       220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~  299 (415)
T 2hqs_A          220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN  299 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence            88889999999999998884 4432   699999987666777778889999999999999988876 44   7777988


Q ss_pred             CCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCC---CCeEEEecccc---cCCCCccceeEEEEeeCCCeeEee
Q psy11524        236 SSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKN---RDLYLSMWSHS---LDKPDTGSVYDLVWSSDATQIAGA  309 (323)
Q Consensus       236 ~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~---~~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~  309 (323)
                      +++...   +..+...+..++|+|+|    +.|++...+   ..+.+|++...   ....|. .+.+++|+|||++|+++
T Consensus       300 ~~~~~~---l~~~~~~~~~~~~spdG----~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~  371 (415)
T 2hqs_A          300 GGAPQR---ITWEGSQNQDADVSSDG----KFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYS  371 (415)
T ss_dssp             SSCCEE---CCCSSSEEEEEEECTTS----SEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEE
T ss_pred             CCCEEE---EecCCCcccCeEECCCC----CEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEE
Confidence            876543   45566788999999999    677666543   35777777654   222333 78999999999999988


Q ss_pred             ecCC---eEEEEEee
Q psy11524        310 CANG---SLLLGTII  321 (323)
Q Consensus       310 ~~dg---~i~~~~l~  321 (323)
                      +.++   .|++|++.
T Consensus       372 s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          372 SSQGMGSVLNLVSTD  386 (415)
T ss_dssp             EEETTEEEEEEEETT
T ss_pred             EcCCCccEEEEEECC
Confidence            8777   78888863

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.95  E-value=9.5e-26  Score=186.59  Aligned_cols=230  Identities=17%  Similarity=0.224  Sum_probs=182.5

Q ss_pred             EeecccceeEeeEeccCCcceeeeeecccccccccee--------eec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEe
Q psy11524         39 TIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLC--------RTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPL  109 (323)
Q Consensus        39 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~  109 (323)
                      .+.+|...|.++.|+|+++.+    ++|+.|++.++|        +.+ .|...+.++.+  ++..+++++.+ +.+++|
T Consensus        62 ~~~~~~~~V~~v~~~~~~~~l----~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~-~~~~~~  134 (318)
T 4ggc_A           62 QMEQPGEYISSVAWIKEGNYL----AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRS-GHIHHH  134 (318)
T ss_dssp             ECCSTTCCEEEEEECTTSSEE----EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETT-SEEEEE
T ss_pred             EecCCCCeEEEEEECCCCCEE----EEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecC-CceEee
Confidence            456788999999999999544    455544444443        333 37777776555  56788887766 588887


Q ss_pred             CCCCc---eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC-----CeeeEeecCCCceeEEEEecCCCE-
Q psy11524        110 SPNNK---ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG-----RQLYSSLTHDHPISSLAWAPGGDM-  180 (323)
Q Consensus       110 ~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~-----~~~~~~~~~~~~v~~~~~~p~~~~-  180 (323)
                      +....   ...+..|...+..+.+++++++|++++.|+.|+   +||+..     ........+...|.+++++|++.. 
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~---iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  211 (318)
T 4ggc_A          135 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVN---VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV  211 (318)
T ss_dssp             ETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE---EEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTE
T ss_pred             ecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCccee---EEECCCCcccccceeeecccCCceEEEEecCCCCcE
Confidence            76554   566789999999999999999999999999999   999952     223455667888999999997554 


Q ss_pred             EEE--EeCC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEe--cCc-EEEEEcCCCceeeeecCCCCccceEE
Q psy11524        181 FAV--GSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGAC--ANV-IHIFDISSSSSSNVTAPLSHSHEITQ  254 (323)
Q Consensus       181 l~~--~~~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~  254 (323)
                      +..  ++.+ .|++||.+.........+...+..+.|+|+++.+++++  .|+ |++||+++++++.+  +.+|...|++
T Consensus       212 ~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~--l~gH~~~V~~  289 (318)
T 4ggc_A          212 LATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE--LKGHTSRVLS  289 (318)
T ss_dssp             EEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE--ECCCSSCEEE
T ss_pred             EEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEE--EcCCCCCEEE
Confidence            333  3334 89999988665555555778899999999999888765  688 99999999999998  7899999999


Q ss_pred             EEEccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        255 LAVNQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       255 ~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      ++|+|++    ..|++++.|+.+++|++..
T Consensus       290 l~~spdg----~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          290 LTMSPDG----ATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             EEECTTS----SCEEEEETTTEEEEECCSC
T ss_pred             EEEcCCC----CEEEEEecCCeEEEEECCC
Confidence            9999999    8999999999999999865

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=1.4e-26  Score=197.50  Aligned_cols=213  Identities=10%  Similarity=0.053  Sum_probs=154.3

Q ss_pred             eeeeccccccccceeee-------------c-CCCCCEEEEEEcC--------CCCeEEEEeeCCeEEEEeCCCCc--ee
Q psy11524         61 SYAASHSWPQALSLCRT-------------L-NVSPPVYSAAWSP--------DSNKVLLTQAKSLVIKPLSPNNK--AT  116 (323)
Q Consensus        61 ~~~~~~~~~~~~~~~~~-------------~-~~~~~v~~~~~sp--------~~~~l~~~~~~~~~v~~~~~~~~--~~  116 (323)
                      .++++++.|++.++|..             + .|.+.|++++|+|        |+++||+++.| +.|++||....  ..
T Consensus       102 ~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D-~tv~~Wd~~~~~~~~  180 (393)
T 4gq1_A          102 LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD-CTLIIWRLTDEGPIL  180 (393)
T ss_dssp             EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT-SEEEEEEEETTEEEE
T ss_pred             CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC-CeEEEEECCCCceee
Confidence            45667777777666531             2 3899999999998        88999999887 59999997554  66


Q ss_pred             EeeccCCCeEEEEECCCC-CEEEEEcCCCceEeeeEEeCCCC-eee-------------------------EeecCCCce
Q psy11524        117 KWQAHDGLILKVAWCSST-DLILSGGEDCKYKASFVWDTDGR-QLY-------------------------SSLTHDHPI  169 (323)
Q Consensus       117 ~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~i~v~d~~~~-~~~-------------------------~~~~~~~~v  169 (323)
                      .+..|...+.+++|+|++ .+|++++.|++|+   +||++.. ...                         ...+|...+
T Consensus       181 ~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~---~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v  257 (393)
T 4gq1_A          181 AGYPLSSPGISVQFRPSNPNQLIVGERNGNIR---IFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSL  257 (393)
T ss_dssp             EEEECSSCEEEEEEETTEEEEEEEEETTSEEE---EEETTCCC----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred             eecCCCCCcEEEEECCCCCceEEecCCCCEEE---EEECCCCcccccccccCCcccceEEecccccceeeeecccccccc
Confidence            677899999999999987 4899999999999   9998532 111                         113466778


Q ss_pred             eEEEEe-cCCCEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEE------------------EEEEcC--CCCEEEEEec
Q psy11524        170 SSLAWA-PGGDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVY------------------DLVWSN--DATQIAGACA  226 (323)
Q Consensus       170 ~~~~~~-p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~------------------~~~~~~--~~~~l~~~~~  226 (323)
                      .+++|+ |+++.+++++.| ++++||+... ....+..+...+.                  ...|+|  ++.++++++.
T Consensus       258 ~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~  337 (393)
T 4gq1_A          258 ANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ  337 (393)
T ss_dssp             SEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETT
T ss_pred             eeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECC
Confidence            899987 799999999997 9999998643 2222222222222                  233444  4446777888


Q ss_pred             Cc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        227 NV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       227 d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      |+ |++||+.+++....  +..|..+|.+++|+|+|    +.|++.+.+| +.+|.+..
T Consensus       338 Dg~V~lwd~~~~~~~~~--~~~~~~~V~svafspdG----~~LA~as~~G-v~lvrL~g  389 (393)
T 4gq1_A          338 HGLIQLINTYEKDSNSI--PIQLGMPIVDFCWHQDG----SHLAIATEGS-VLLTRLMG  389 (393)
T ss_dssp             TTEEEEEETTCTTCCEE--EEECSSCEEEEEECTTS----SEEEEEESSE-EEEEEEGG
T ss_pred             CCEEEEEECCCCcEEEE--ecCCCCcEEEEEEcCCC----CEEEEEeCCC-eEEEEEeC
Confidence            99 99999999988877  57788899999999999    8999887654 66665543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.94  E-value=7.8e-25  Score=177.84  Aligned_cols=214  Identities=10%  Similarity=0.025  Sum_probs=151.9

Q ss_pred             ccceeEeeEeccCCcceeeeeeccccccccceeeecCCCCCEEEEEEcCCCCeEEEEe-eCCeEEEEeCCCC-c--eeEe
Q psy11524         43 YDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQ-AKSLVIKPLSPNN-K--ATKW  118 (323)
Q Consensus        43 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~~~v~~~~~~~-~--~~~~  118 (323)
                      +...|.++.++|+.+.+-..+++++.            ...|.++   ++|+.+.+++ ..++.|++|+... .  ...+
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~------------~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~  174 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGN------------IKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ  174 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEE------------EEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEE
T ss_pred             cccceEEEEECCCccccccEEEeCCC------------eEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeee
Confidence            46688999999993333244444321            1222333   5666555532 2335888888744 2  5567


Q ss_pred             eccCCCeEEEEECC---CCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCC---CceeEEEEecCCCEE----------
Q psy11524        119 QAHDGLILKVAWCS---STDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHD---HPISSLAWAPGGDMF----------  181 (323)
Q Consensus       119 ~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~---~~v~~~~~~p~~~~l----------  181 (323)
                      ..|...+..++|+|   ++.+|++++.|++|+   +||++ ++.+.++.++.   ..+.+++|+|+|.++          
T Consensus       175 ~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIk---IWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w  251 (356)
T 2w18_A          175 FLMPPEETILTFAEVQGMQEALLGTTIMNNIV---IWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKE  251 (356)
T ss_dssp             EECCCSSCEEEEEEEETSTTEEEEEETTSEEE---EEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------
T ss_pred             ccCCCceeeEEeeccCCCCceEEEecCCCcEE---EEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcc
Confidence            78999999999999   779999999999999   99996 77888887643   357788999999887          


Q ss_pred             --EEEeCC-eEEEEeCCCCee-eec-----CCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccc
Q psy11524        182 --AVGSYN-TLRLCDKVGWSH-SLD-----KPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHE  251 (323)
Q Consensus       182 --~~~~~~-~i~i~d~~~~~~-~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~  251 (323)
                        ++|+.| ++++||..+... ..+     .+|...+.+..++  +.++++++.|+ |+|||+.+++.+.+  +.+|...
T Consensus       252 ~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~t--L~gH~~~  327 (356)
T 2w18_A          252 SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTAL--LPPVSDQ  327 (356)
T ss_dssp             ------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEE--ECCC--C
T ss_pred             eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEE--ecCCCCC
Confidence              446667 999999875533 222     3555555544444  77899999999 99999999999998  6778765


Q ss_pred             eE-EEEEccCCCCccceEEEEeCCCCeEEEec
Q psy11524        252 IT-QLAVNQTGSLQERHVAFIDKNRDLYLSMW  282 (323)
Q Consensus       252 v~-~~~~~p~g~~~d~~l~~~~~~~~~~~~~~  282 (323)
                      +. .++|+|+|    .+|+.++.|+.+++|++
T Consensus       328 vvs~vafSPDG----~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          328 HWSFVKWSGTD----SHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CCCEEEECSSS----SEEEEECTTSCEEEEEE
T ss_pred             eEEEEEECCCC----CEEEEEECCCcEEEecC
Confidence            54 68999999    89999999999999985

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=1.3e-24  Score=200.25  Aligned_cols=265  Identities=11%  Similarity=0.062  Sum_probs=189.7

Q ss_pred             cceeEeeEeccCCcceeeeee-cc--------cccc-ccceeeecCC---C----------------------CCEEEEE
Q psy11524         44 DGTVINYPISPYISVLHSYAA-SH--------SWPQ-ALSLCRTLNV---S----------------------PPVYSAA   88 (323)
Q Consensus        44 ~~~v~~~~~~~~~~~~~~~~~-~~--------~~~~-~~~~~~~~~~---~----------------------~~v~~~~   88 (323)
                      ...+.++.|+|||+.++.... ++        .||. +.+..+.+.+   .                      ..+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            446889999999987775554 33        2442 2222222321   1                      2378999


Q ss_pred             EcCCCCeEEEEeeCCeEEEEeCCCCc----eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeec
Q psy11524         89 WSPDSNKVLLTQAKSLVIKPLSPNNK----ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLT  164 (323)
Q Consensus        89 ~sp~~~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~  164 (323)
                      |||||++|++++.  +.|++|+..+.    ...+..+...+..++|+|||++|++++ ++.|.   +||+.+.....+..
T Consensus       116 ~SpDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~---~~d~~~g~~~~~~~  189 (741)
T 2ecf_A          116 WSPDAQRLLFPLG--GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLW---VIDLASGRQMQLTA  189 (741)
T ss_dssp             ECTTSSEEEEEET--TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEE---EEETTTTEEEECCC
T ss_pred             ECCCCCEEEEEeC--CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEE---EEecCCCCEEEecc
Confidence            9999999998875  58999998654    456777888999999999999999887 45777   99997665555433


Q ss_pred             CCCc-----------------eeEEEEecCCCEEEEEeC-C---------------------------------eEEEEe
Q psy11524        165 HDHP-----------------ISSLAWAPGGDMFAVGSY-N---------------------------------TLRLCD  193 (323)
Q Consensus       165 ~~~~-----------------v~~~~~~p~~~~l~~~~~-~---------------------------------~i~i~d  193 (323)
                      ....                 +.+++|+|||++|++++. +                                 .|++||
T Consensus       190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d  269 (741)
T 2ecf_A          190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS  269 (741)
T ss_dssp             CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred             CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence            2221                 478999999999988864 2                                 788899


Q ss_pred             CCC-CeeeecC---CCCccEEEEEEcCCCCEEEEEec-----Cc-EEEEEcCCCceeeeecCCCCcc----ceEEEEEcc
Q psy11524        194 KVG-WSHSLDK---PDTGSVYDLVWSNDATQIAGACA-----NV-IHIFDISSSSSSNVTAPLSHSH----EITQLAVNQ  259 (323)
Q Consensus       194 ~~~-~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-----d~-i~iwd~~~~~~~~~~~~~~~~~----~v~~~~~~p  259 (323)
                      +.+ .......   .+...+..++| |||++|++++.     +. |++||+.+++....  +..+..    .+..++|+|
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~--~~~~~~~~~~~~~~~~~sp  346 (741)
T 2ecf_A          270 PAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVL--AHETSPTWVPLHNSLRFLD  346 (741)
T ss_dssp             SSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEE--EEEECSSCCCCCSCCEECT
T ss_pred             CCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEE--EEcCCCCcCCcCCceEECC
Confidence            876 5443322   46778999999 99999987764     45 99999999887665  222222    456889999


Q ss_pred             CCCCccceEEEEeCCCCeEEEeccc--c--cCCCCccceeEE-EEeeCCCeeE-eeecCC--eEEEEEee
Q psy11524        260 TGSLQERHVAFIDKNRDLYLSMWSH--S--LDKPDTGSVYDL-VWSSDATQIA-GACANG--SLLLGTII  321 (323)
Q Consensus       260 ~g~~~d~~l~~~~~~~~~~~~~~~~--~--~~~~~~~~v~~~-~~s~~g~~l~-s~~~dg--~i~~~~l~  321 (323)
                      +|    +.+.+.+.++...+|.+..  .  ....|...+..+ +|+|+|+.|+ +++.++  .+++|++.
T Consensus       347 dg----~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          347 DG----SILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             TS----CEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred             CC----eEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence            98    6777777777777776542  1  233446677777 5999999776 555555  89999874

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=2.3e-24  Score=176.12  Aligned_cols=228  Identities=16%  Similarity=0.111  Sum_probs=167.7

Q ss_pred             eecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCC-c-eeE-eecc-CCCeEEEEECCCCCEEEEEc--CCCceEee
Q psy11524         76 RTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN-K-ATK-WQAH-DGLILKVAWCSSTDLILSGG--EDCKYKAS  149 (323)
Q Consensus        76 ~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~-~-~~~-~~~~-~~~v~~~~~~~~~~~l~~~~--~d~~i~~i  149 (323)
                      ....|...+.+++|+|+|++|++++ + +.|++|+..+ . ... ...+ ...+.+++|+|++++|++++  .++... |
T Consensus        36 ~~~~~~~~v~~~~~spdg~~l~~~~-~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~-l  112 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGKYLLLNS-E-GLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSA-I  112 (297)
T ss_dssp             EEEEESSCCEEEEECTTSSEEEEEE-T-TEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCE-E
T ss_pred             eeccCCcceEeeEECCCCCEEEEEc-C-CeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcce-E
Confidence            3445788999999999999999875 4 4899999877 4 322 3334 36788999999999999988  334555 2


Q ss_pred             eEEeCCCCeeeEeecCCCceeEEEEecCCCEEE-EEeCC-eEEEEeC--CCCeeeecCCCCccEEEEEEcCCCCEEEEEe
Q psy11524        150 FVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFA-VGSYN-TLRLCDK--VGWSHSLDKPDTGSVYDLVWSNDATQIAGAC  225 (323)
Q Consensus       150 ~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~~-~i~i~d~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  225 (323)
                      +.+++.+.....+..+. .+..++|+|+++.++ ++..+ .+++|++  .+.....+..+...+.+++|+|+|++|++++
T Consensus       113 ~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  191 (297)
T 2ojh_A          113 YLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNS  191 (297)
T ss_dssp             EEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEe
Confidence            25555555555555443 488999999999887 44444 7888874  4555566666788899999999999888776


Q ss_pred             c-Cc-EEEEEcC-CCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCC-----------CCeEEEecccc----cC
Q psy11524        226 A-NV-IHIFDIS-SSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKN-----------RDLYLSMWSHS----LD  287 (323)
Q Consensus       226 ~-d~-i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~-----------~~~~~~~~~~~----~~  287 (323)
                      . ++ +++|++. .+.....  +..+...+..++|+|++    ..|++...+           ..+.+|++...    +.
T Consensus       192 ~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~s~dg----~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~  265 (297)
T 2ojh_A          192 SRTGQMQIWRVRVDGSSVER--ITDSAYGDWFPHPSPSG----DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF  265 (297)
T ss_dssp             CTTSSCEEEEEETTSSCEEE--CCCCSEEEEEEEECTTS----SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred             cCCCCccEEEECCCCCCcEE--EecCCcccCCeEECCCC----CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence            4 77 9999876 4455555  67777889999999999    666665543           34677776553    11


Q ss_pred             --CCCccceeEEEEeeCCCeeEeeecCC
Q psy11524        288 --KPDTGSVYDLVWSSDATQIAGACANG  313 (323)
Q Consensus       288 --~~~~~~v~~~~~s~~g~~l~s~~~dg  313 (323)
                        ..|...+.+++|+|+|++|++++.+.
T Consensus       266 ~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          266 DLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             ccCCCCcccccceECCCCCEEEEEEecc
Confidence              13567889999999999998887664

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=2.3e-24  Score=198.52  Aligned_cols=231  Identities=12%  Similarity=0.125  Sum_probs=171.5

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCe-----EEEEeCCCCc-ee-EeeccC------------------------CCeEEEE
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSL-----VIKPLSPNNK-AT-KWQAHD------------------------GLILKVA  129 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~-----~v~~~~~~~~-~~-~~~~~~------------------------~~v~~~~  129 (323)
                      ...+.+++|||||++|++++..++     .|++|+..+. .. .+..+.                        ..+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            567999999999999999987234     8999998765 22 232222                        2378899


Q ss_pred             ECCCCCEEEEEcCCCceEeeeEEeCCCC---eeeEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCeeeecC-CC
Q psy11524        130 WCSSTDLILSGGEDCKYKASFVWDTDGR---QLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLDK-PD  205 (323)
Q Consensus       130 ~~~~~~~l~~~~~d~~i~~i~v~d~~~~---~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~-~~  205 (323)
                      |+|||++|++++. +.|.   +||+.+.   ....+..+...+.+++|+|||++|++++.+.|++||+.+....... .+
T Consensus       116 ~SpDg~~l~~~~~-~~i~---~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~  191 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELY---LYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADG  191 (741)
T ss_dssp             ECTTSSEEEEEET-TEEE---EEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCC
T ss_pred             ECCCCCEEEEEeC-CcEE---EEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCC
Confidence            9999999999886 8888   9999866   7777888888899999999999999999889999999866444332 23


Q ss_pred             Ccc----------------EEEEEEcCCCCEEEEEecC----------------------------------cEEEEEcC
Q psy11524        206 TGS----------------VYDLVWSNDATQIAGACAN----------------------------------VIHIFDIS  235 (323)
Q Consensus       206 ~~~----------------v~~~~~~~~~~~l~~~~~d----------------------------------~i~iwd~~  235 (323)
                      ...                +..++|||||++|++++.|                                  .|++||+.
T Consensus       192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~  271 (741)
T 2ecf_A          192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA  271 (741)
T ss_dssp             CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred             ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence            222                4789999999999887643                                  27788988


Q ss_pred             C-CceeeeecCCCCccceEEEEEccCCCCccceEEEEeC-----CCCeEEEecccc----cCCCCc-c---ceeEEEEee
Q psy11524        236 S-SSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDK-----NRDLYLSMWSHS----LDKPDT-G---SVYDLVWSS  301 (323)
Q Consensus       236 ~-~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~-----~~~~~~~~~~~~----~~~~~~-~---~v~~~~~s~  301 (323)
                      + ++.........+...+..++| |+|    +.|++...     +..+.+|++.+.    +...+. .   .+.+++|+|
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~-pDg----~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp  346 (741)
T 2ecf_A          272 EQAQTQWIDLGKEQDIYLARVNW-RDP----QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD  346 (741)
T ss_dssp             TTCCCEEECCCSCSSEEEEEEEE-EET----TEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT
T ss_pred             CCCceEEecCCCCcceEEEEEEe-CCC----CEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC
Confidence            8 776554111147788999999 999    56655432     234566665543    111111 1   456899999


Q ss_pred             CCCeeEeeecCCeEEEEEe
Q psy11524        302 DATQIAGACANGSLLLGTI  320 (323)
Q Consensus       302 ~g~~l~s~~~dg~i~~~~l  320 (323)
                      ||+++++++.||.+++|.+
T Consensus       347 dg~~~~~~~~~g~~~l~~~  365 (741)
T 2ecf_A          347 DGSILWSSERTGFQHLYRI  365 (741)
T ss_dssp             TSCEEEEECTTSSCEEEEE
T ss_pred             CCeEEEEecCCCccEEEEE
Confidence            9999999999998888876

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=7.3e-24  Score=201.76  Aligned_cols=268  Identities=11%  Similarity=0.044  Sum_probs=202.1

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeecc---ccc--cccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCC
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASH---SWP--QALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPN  112 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~  112 (323)
                      ..+.+|...+.++.|+++. .++....++   .|.  ......+.+.+...+..++|+|||++|+++. + +.|++|+..
T Consensus       197 ~~l~~~~~~v~~~~~s~d~-l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~-~-~~i~~~d~~  273 (1045)
T 1k32_A          197 KKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSK-G-GSIYIFNPD  273 (1045)
T ss_dssp             EEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEE-T-TEEEEECTT
T ss_pred             EECcCCCCcccceEEeCCE-EEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEe-C-CEEEEecCC
Confidence            4457899999999999882 221111111   232  1122233344444567889999999999874 4 589999985


Q ss_pred             Cc-eeEeec-----------cCCCeEEEEEC-CCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCC-ceeEEEEecCC
Q psy11524        113 NK-ATKWQA-----------HDGLILKVAWC-SSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDH-PISSLAWAPGG  178 (323)
Q Consensus       113 ~~-~~~~~~-----------~~~~v~~~~~~-~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~-~v~~~~~~p~~  178 (323)
                      .. +..+..           |...+.+++|+ |||++|++++ ++.+.   +|++.+.....+..+.. .+..++|+ ||
T Consensus       274 ~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~s-dg  348 (1045)
T 1k32_A          274 TEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAF---IQDVSGTYVLKVPEPLRIRYVRRGGD-TK  348 (1045)
T ss_dssp             TCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEE---EECTTSSBEEECSCCSCEEEEEECSS-SE
T ss_pred             ceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEE---EEcCCCCceEEccCCCcceEEeeeEc-CC
Confidence            44 333333           33468899999 9999999887 77888   99998766666777777 89999999 99


Q ss_pred             CEEEEEeCC-eEE-EEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEE
Q psy11524        179 DMFAVGSYN-TLR-LCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQL  255 (323)
Q Consensus       179 ~~l~~~~~~-~i~-i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~  255 (323)
                      +.+++++.+ .+. +||+.+.....+..+...+..++|+|||++|++++.++ |++||+.+++....  ...|...+..+
T Consensus       349 ~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~--~~~~~~~v~~~  426 (1045)
T 1k32_A          349 VAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI--ERSREAMITDF  426 (1045)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--EECSSSCCCCE
T ss_pred             CeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEe--ccCCCCCccce
Confidence            999999886 888 99988665555557778899999999999999999999 99999999987766  45788889999


Q ss_pred             EEccCCCCccceEEEEeCC----------CCeEEEecccc---cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        256 AVNQTGSLQERHVAFIDKN----------RDLYLSMWSHS---LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       256 ~~~p~g~~~d~~l~~~~~~----------~~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      +|+|+|    +.|+....+          +.+++|++...   ....|...+.+++|+|||++|+.++.++...+|+
T Consensus       427 ~~SpDG----~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~  499 (1045)
T 1k32_A          427 TISDNS----RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD  499 (1045)
T ss_dssp             EECTTS----CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             EECCCC----CeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence            999999    666665443          36778877654   2334567788999999999999999887777665

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=9.2e-23  Score=180.35  Aligned_cols=264  Identities=8%  Similarity=-0.002  Sum_probs=189.5

Q ss_pred             eEeeEeccCCcceeeeeecc---cccc---ccceeeecCCCCCEEEEEEcC----CCCeEEEEeeCCeEEEEeCCCCc--
Q psy11524         47 VINYPISPYISVLHSYAASH---SWPQ---ALSLCRTLNVSPPVYSAAWSP----DSNKVLLTQAKSLVIKPLSPNNK--  114 (323)
Q Consensus        47 v~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~~~~~~~v~~~~~~~~--  114 (323)
                      +..+.|+|+|+.++....++   .||.   +.++...+.+...+..++|+|    +|+++++++...+.|.+||....  
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~  260 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP  260 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc
Confidence            77899999997766544333   2443   566666777788899999999    99999999875579999997654  


Q ss_pred             eeEeec----------cCC-CeEEEEECCCCC-EEEEEcCCCceEeeeEEeCCC-Ceee--EeecCCCceeEEEEecCCC
Q psy11524        115 ATKWQA----------HDG-LILKVAWCSSTD-LILSGGEDCKYKASFVWDTDG-RQLY--SSLTHDHPISSLAWAPGGD  179 (323)
Q Consensus       115 ~~~~~~----------~~~-~v~~~~~~~~~~-~l~~~~~d~~i~~i~v~d~~~-~~~~--~~~~~~~~v~~~~~~p~~~  179 (323)
                      +..+..          |.. .+.++.++|++. ++++...+++|.   +||... +.+.  .+ .+...+.+++|+|+|+
T Consensus       261 ~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~---vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~  336 (543)
T 1nir_A          261 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL---LVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHR  336 (543)
T ss_dssp             EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE---EEECTTSSSCEEEEE-ECCSSCCCEEECTTSC
T ss_pred             ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEE---EEEecCCCcceeEEe-ccCcCccCceECCCCC
Confidence            334432          223 789999999765 556677789999   999953 2222  33 3456688999999999


Q ss_pred             EEEEEeC--CeEEEEeCCCCee-eecC----CCCccEEEEEEcCC-CCEEEEEe-cCc-EEEEEcCC-------Cceeee
Q psy11524        180 MFAVGSY--NTLRLCDKVGWSH-SLDK----PDTGSVYDLVWSND-ATQIAGAC-ANV-IHIFDISS-------SSSSNV  242 (323)
Q Consensus       180 ~l~~~~~--~~i~i~d~~~~~~-~~~~----~~~~~v~~~~~~~~-~~~l~~~~-~d~-i~iwd~~~-------~~~~~~  242 (323)
                      ++++++.  ++|.+||..+.++ ..+.    +|.+....+ ++|+ |..++++. .++ |.+||..+       ++.+++
T Consensus       337 ~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~  415 (543)
T 1nir_A          337 YFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAE  415 (543)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred             EEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEE
Confidence            8887765  4999999876543 3332    254433333 5787 55666665 467 99999988       788888


Q ss_pred             ecCCCCccceEEEEEccCCCCccceEEEEe-------CCCCeEEEecccc--c-----------CCCCccceeEEEEeeC
Q psy11524        243 TAPLSHSHEITQLAVNQTGSLQERHVAFID-------KNRDLYLSMWSHS--L-----------DKPDTGSVYDLVWSSD  302 (323)
Q Consensus       243 ~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~-------~~~~~~~~~~~~~--~-----------~~~~~~~v~~~~~s~~  302 (323)
                        +..+...+..++++|++    +.|.+..       .+..+.+|++.+.  .           ...+...+..++|+|+
T Consensus       416 --l~~~g~~~~~v~~~pdg----~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  489 (543)
T 1nir_A          416 --LQGQGGGSLFIKTHPKS----SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR  489 (543)
T ss_dssp             --EECSCSCCCCEECCTTC----CEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSS
T ss_pred             --EEcCCCCceEEEcCCCC----CcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCC
Confidence              67777788889999999    5555543       1445666666543  1           1234678999999999


Q ss_pred             CCeeEeee-----cCCeEEEEEee
Q psy11524        303 ATQIAGAC-----ANGSLLLGTII  321 (323)
Q Consensus       303 g~~l~s~~-----~dg~i~~~~l~  321 (323)
                      |+.|..+.     .|+.|.|||..
T Consensus       490 g~~~~~s~~~~~~~~~~i~v~D~~  513 (543)
T 1nir_A          490 GDEVWFSVWNGKNDSSALVVVDDK  513 (543)
T ss_dssp             SSEEEEEEECCTTSCCEEEEEETT
T ss_pred             CCEEEEEeecCCCCCCeEEEEECC
Confidence            99888653     47999999864

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=2.1e-22  Score=167.64  Aligned_cols=232  Identities=12%  Similarity=0.048  Sum_probs=160.1

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc---eeEeeccCCCeEEEEECCCCCEEEEEcCCC---ceEeeeEEe
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK---ATKWQAHDGLILKVAWCSSTDLILSGGEDC---KYKASFVWD  153 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~i~v~d  153 (323)
                      +...+ +++|+|+|+++++++..++.|++||....   ...+..+..+..+++|+|+|++++++..++   .|.   +||
T Consensus        39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~---v~d  114 (331)
T 3u4y_A           39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQ---SYS  114 (331)
T ss_dssp             CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEE---EEE
T ss_pred             cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEE---EEE
Confidence            34455 99999999988888876679999998655   334455555555599999999998655553   899   999


Q ss_pred             CCCCeeeEeecCCCceeEEEEecCCCEEEEEeC--Ce-EEEEeCCCC-ee----eecCCCCccEEEEEEcCCCCEEEEEe
Q psy11524        154 TDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY--NT-LRLCDKVGW-SH----SLDKPDTGSVYDLVWSNDATQIAGAC  225 (323)
Q Consensus       154 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--~~-i~i~d~~~~-~~----~~~~~~~~~v~~~~~~~~~~~l~~~~  225 (323)
                      ++...............+++|+|+|+++++++.  +. +.+|++... ..    .........+..++|+|+|+++++++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~  194 (331)
T 3u4y_A          115 FLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVAN  194 (331)
T ss_dssp             TTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEE
T ss_pred             CCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEe
Confidence            975444443344556799999999986665544  47 999997632 11    11123445689999999999776665


Q ss_pred             -cCc-EEEEEcCCCce---eeeecCCCCccceEEEEEccCCCCccceEEEEeC-CCCeEEEecccc-c---------CCC
Q psy11524        226 -ANV-IHIFDISSSSS---SNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDK-NRDLYLSMWSHS-L---------DKP  289 (323)
Q Consensus       226 -~d~-i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~-~~~~~~~~~~~~-~---------~~~  289 (323)
                       .++ |.+||+.+++.   +..  +. ....+..++|+|+|    +.+.+.+. ++.+.+|+.... .         ...
T Consensus       195 ~~~~~v~v~d~~~~~~~~~~~~--~~-~~~~~~~~~~spdg----~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~  267 (331)
T 3u4y_A          195 LIGNSIGILETQNPENITLLNA--VG-TNNLPGTIVVSRDG----STVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLI  267 (331)
T ss_dssp             TTTTEEEEEECSSTTSCEEEEE--EE-CSSCCCCEEECTTS----SEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCC
T ss_pred             CCCCeEEEEECCCCcccceeee--cc-CCCCCceEEECCCC----CEEEEEEcCCCEEEEEECCCCceeeeccccccccc
Confidence             466 99999999887   665  23 34567889999999    44444432 334555555432 0         001


Q ss_pred             Cc---cceeEEEEeeCCCeeEee-ecCCeEEEEEeec
Q psy11524        290 DT---GSVYDLVWSSDATQIAGA-CANGSLLLGTIIQ  322 (323)
Q Consensus       290 ~~---~~v~~~~~s~~g~~l~s~-~~dg~i~~~~l~~  322 (323)
                      +.   .....++|+|||++|+++ ..++.|.+|++.+
T Consensus       268 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          268 DPRPLFGANQMALNKTETKLFISANISRELKVFTISG  304 (331)
T ss_dssp             CCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred             CCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence            12   223568999999988655 4567999999854

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=1.2e-23  Score=193.17  Aligned_cols=266  Identities=11%  Similarity=0.059  Sum_probs=177.8

Q ss_pred             eeEeeEeccCCcceeeeeecc---cccc-ccceeeecCCCC----CEEEEEEcCCCCeEEEEeeCC--------eEEEEe
Q psy11524         46 TVINYPISPYISVLHSYAASH---SWPQ-ALSLCRTLNVSP----PVYSAAWSPDSNKVLLTQAKS--------LVIKPL  109 (323)
Q Consensus        46 ~v~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~----~v~~~~~sp~~~~l~~~~~~~--------~~v~~~  109 (323)
                      .+.++.|+|||+.++. ..++   .||. +.+....+.+..    .|.+++|||||++|++++.+.        +.+++|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4567899999975543 2222   2552 233333444322    499999999999999987542        589999


Q ss_pred             CCCCc-eeEee---ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEee-cCCCc----------------
Q psy11524        110 SPNNK-ATKWQ---AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSL-THDHP----------------  168 (323)
Q Consensus       110 ~~~~~-~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~-~~~~~----------------  168 (323)
                      +..+. ...+.   .|...+..++|||||+.|++++. +.|+   +||+.+.....+. .+...                
T Consensus        97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~---~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~  172 (723)
T 1xfd_A           97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIY---YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEIL  172 (723)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEE---EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred             ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEE---EEECCCCceEEEecCCCCCceECcccceeEEEEec
Confidence            98765 33343   33445889999999999999886 6787   9999754444433 22332                


Q ss_pred             --eeEEEEecCCCEEEEEeCC-----------------------------------eEEEEeCCCCe-eeecCCC-----
Q psy11524        169 --ISSLAWAPGGDMFAVGSYN-----------------------------------TLRLCDKVGWS-HSLDKPD-----  205 (323)
Q Consensus       169 --v~~~~~~p~~~~l~~~~~~-----------------------------------~i~i~d~~~~~-~~~~~~~-----  205 (323)
                        +.+++|+|||+.|++++.+                                   .|++||+.+.. ...+..+     
T Consensus       173 ~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~  252 (723)
T 1xfd_A          173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRM  252 (723)
T ss_dssp             SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred             cCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCC
Confidence              3789999999999988641                                   68999987654 2344333     


Q ss_pred             -CccEEEEEEcCCCCEEEEEec----Cc-EEEEEcCCCceeeeecCCCCccce----EEEEEccCCCCccceEEEE--eC
Q psy11524        206 -TGSVYDLVWSNDATQIAGACA----NV-IHIFDISSSSSSNVTAPLSHSHEI----TQLAVNQTGSLQERHVAFI--DK  273 (323)
Q Consensus       206 -~~~v~~~~~~~~~~~l~~~~~----d~-i~iwd~~~~~~~~~~~~~~~~~~v----~~~~~~p~g~~~d~~l~~~--~~  273 (323)
                       ...+..++|+|||++|++...    +. |++||+.+++..... ...+...+    ..++|+|+|    +.|++.  +.
T Consensus       253 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~spdg----~~l~~~~~~~  327 (723)
T 1xfd_A          253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH-EDESEAWLHRQNEEPVFSKDG----RKFFFIRAIP  327 (723)
T ss_dssp             SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE-EEECSSCCCCCCCCCEECTTS----CSEEEEEEEC
T ss_pred             ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE-EeccCCEEeccCCCceEcCCC----CeEEEEEecc
Confidence             567899999999998877653    24 999999998866542 11222333    378999999    666654  44


Q ss_pred             CC------CeEEEe-ccccc------CCCCccceeE-EEEeeCCCeeEeeecC---CeEEEEEee
Q psy11524        274 NR------DLYLSM-WSHSL------DKPDTGSVYD-LVWSSDATQIAGACAN---GSLLLGTII  321 (323)
Q Consensus       274 ~~------~~~~~~-~~~~~------~~~~~~~v~~-~~~s~~g~~l~s~~~d---g~i~~~~l~  321 (323)
                      ++      .+.+|+ .....      ...+...+.. ++|+|||+.|+..+.+   +.+++|++.
T Consensus       328 ~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~  392 (723)
T 1xfd_A          328 QGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN  392 (723)
T ss_dssp             CSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred             cCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence            45      355565 22211      1111333444 6999999998866555   789999873

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=4.4e-23  Score=172.28  Aligned_cols=239  Identities=10%  Similarity=0.077  Sum_probs=167.2

Q ss_pred             eeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCC--Cc-e---eEeeccCCCeEEEEECCCCCEEEEEcC-CCce
Q psy11524         74 LCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPN--NK-A---TKWQAHDGLILKVAWCSSTDLILSGGE-DCKY  146 (323)
Q Consensus        74 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~--~~-~---~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i  146 (323)
                      ....+.+...+.+++|+|+|++|++++.+++.+.+|+..  .. .   ..+..+ ..+..++|+|++++|++++. ++.|
T Consensus        30 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i  108 (343)
T 1ri6_A           30 LTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHISTDHQGQFVFVGSYNAGNV  108 (343)
T ss_dssp             EEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEEECTTSSEEEEEETTTTEE
T ss_pred             EeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEEEcCCCCEEEEEecCCCeE
Confidence            334456778899999999999999888765789998875  32 2   233333 37889999999998766654 7889


Q ss_pred             EeeeEEeCC---CCeeeEeecCCCceeEEEEecCCCEEEEEe-CC-eEEEEeCCC-Ceee------ecCCCCccEEEEEE
Q psy11524        147 KASFVWDTD---GRQLYSSLTHDHPISSLAWAPGGDMFAVGS-YN-TLRLCDKVG-WSHS------LDKPDTGSVYDLVW  214 (323)
Q Consensus       147 ~~i~v~d~~---~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~~-~i~i~d~~~-~~~~------~~~~~~~~v~~~~~  214 (323)
                      .   +||+.   .............+.+++|+|+|+++++++ .+ .|++||+.. ....      ........+..++|
T Consensus       109 ~---~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (343)
T 1ri6_A          109 S---VTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVF  185 (343)
T ss_dssp             E---EEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEE
T ss_pred             E---EEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEE
Confidence            9   99993   222222233445688999999999888887 44 999999875 3332      22223457889999


Q ss_pred             cCCCCEEEEEe-cCc-EEEEEcCC--Cce--eeeec-CCC---CccceEEEEEccCCCCccceEEEEe-CCCCeEEEecc
Q psy11524        215 SNDATQIAGAC-ANV-IHIFDISS--SSS--SNVTA-PLS---HSHEITQLAVNQTGSLQERHVAFID-KNRDLYLSMWS  283 (323)
Q Consensus       215 ~~~~~~l~~~~-~d~-i~iwd~~~--~~~--~~~~~-~~~---~~~~v~~~~~~p~g~~~d~~l~~~~-~~~~~~~~~~~  283 (323)
                      +|+|+++++++ .++ |.+||+..  ++.  ..... +..   ....+..++|+|++    +.+.+.. .++.+.+|++.
T Consensus       186 ~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg----~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          186 HPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG----RHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS----SEEEEEETTTTEEEEEEEC
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC----CEEEEEecCCCEEEEEEEc
Confidence            99999877665 677 99999853  432  22110 111   12356789999998    6666544 56778888876


Q ss_pred             c--c------cCCCCccceeEEEEeeCCCeeEeee-cCCeEEEEEee
Q psy11524        284 H--S------LDKPDTGSVYDLVWSSDATQIAGAC-ANGSLLLGTII  321 (323)
Q Consensus       284 ~--~------~~~~~~~~v~~~~~s~~g~~l~s~~-~dg~i~~~~l~  321 (323)
                      .  .      .... ...+.+++|+|+|++|++++ .++.|.+|++.
T Consensus       262 ~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          262 EDGSVLSKEGFQPT-ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             TTSCCEEEEEEEEC-SSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CCCCceEEeeeecC-CCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            2  1      1112 23388999999999888777 68999999763

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=2.5e-23  Score=190.61  Aligned_cols=264  Identities=10%  Similarity=0.065  Sum_probs=181.9

Q ss_pred             ceeEeeEeccCCcceeeeeecc---cccc-ccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCC-----c-
Q psy11524         45 GTVINYPISPYISVLHSYAASH---SWPQ-ALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN-----K-  114 (323)
Q Consensus        45 ~~v~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~-----~-  114 (323)
                      ..|.++.|+|| ..++.. .++   .||. +.++.....+...+.+++|||||++|+++ .+ +.|++|+..+     . 
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~-~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RN-HNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ET-TEEEEEECBCTTSCCCC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-EC-CeEEEEecCcccccCCC
Confidence            46899999999 433322 222   2553 33333444567789999999999999986 44 5899999875     4 


Q ss_pred             eeEe-eccCCC--------------eEEEEECCCCCEEEEEc---------------------------------CCCce
Q psy11524        115 ATKW-QAHDGL--------------ILKVAWCSSTDLILSGG---------------------------------EDCKY  146 (323)
Q Consensus       115 ~~~~-~~~~~~--------------v~~~~~~~~~~~l~~~~---------------------------------~d~~i  146 (323)
                      ...+ ..+...              +.++.|+|||++|++++                                 .+..|
T Consensus       158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l  237 (706)
T 2z3z_A          158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV  237 (706)
T ss_dssp             CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred             cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence            3332 222222              47899999999999987                                 23445


Q ss_pred             EeeeEEeCCCCeeeEee---cCCCceeEEEEecCCCEEEEEeC-C-----eEEEEeCCCC-eeeecC--CCCc---cEEE
Q psy11524        147 KASFVWDTDGRQLYSSL---THDHPISSLAWAPGGDMFAVGSY-N-----TLRLCDKVGW-SHSLDK--PDTG---SVYD  211 (323)
Q Consensus       147 ~~i~v~d~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~~~~~-~-----~i~i~d~~~~-~~~~~~--~~~~---~v~~  211 (323)
                      .   +||+++.....+.   .+...+.+++|+|||+.|++++. .     .|++||+.+. ......  .+..   .+..
T Consensus       238 ~---~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~  314 (706)
T 2z3z_A          238 G---IYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP  314 (706)
T ss_dssp             E---EEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred             E---EEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence            5   9999766554443   35567899999999998888654 2     7999998765 433222  1222   2467


Q ss_pred             EEEcC--CCCEEEEEecCc-EEEEEcC-CCceeeeecCCCCccceEE-EEEccCCCCccceEEEEeCC-C----CeEEEe
Q psy11524        212 LVWSN--DATQIAGACANV-IHIFDIS-SSSSSNVTAPLSHSHEITQ-LAVNQTGSLQERHVAFIDKN-R----DLYLSM  281 (323)
Q Consensus       212 ~~~~~--~~~~l~~~~~d~-i~iwd~~-~~~~~~~~~~~~~~~~v~~-~~~~p~g~~~d~~l~~~~~~-~----~~~~~~  281 (323)
                      ++|+|  +|++++++..++ ++||++. +++.+..  +..+...+.. ++|+|++    +.|.+...+ +    .+..|+
T Consensus       315 ~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~--l~~~~~~v~~~~~~spdg----~~l~~~~~~~~~~~~~l~~~d  388 (706)
T 2z3z_A          315 LTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ--VTKGEWEVTNFAGFDPKG----TRLYFESTEASPLERHFYCID  388 (706)
T ss_dssp             CEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEE--CCCSSSCEEEEEEECTTS----SEEEEEESSSCTTCBEEEEEE
T ss_pred             ceeecCCCCEEEEEEccCCccEEEEEECCCCEEEe--cCCCCeEEEeeeEEcCCC----CEEEEEecCCCCceEEEEEEE
Confidence            89999  999999998899 8888876 5666666  5667777776 7999998    666555443 3    334444


Q ss_pred             cccc--cCCCCccceeEEEEeeCCCeeEeeecC----CeEEEEEee
Q psy11524        282 WSHS--LDKPDTGSVYDLVWSSDATQIAGACAN----GSLLLGTII  321 (323)
Q Consensus       282 ~~~~--~~~~~~~~v~~~~~s~~g~~l~s~~~d----g~i~~~~l~  321 (323)
                      ....  ..-.|...+.+++|||||++|+....+    +.|++|++.
T Consensus       389 ~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~  434 (706)
T 2z3z_A          389 IKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG  434 (706)
T ss_dssp             TTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred             cCCCCceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence            4332  111246678999999999988866443    569999864

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.92  E-value=7.1e-23  Score=195.00  Aligned_cols=270  Identities=7%  Similarity=-0.049  Sum_probs=195.9

Q ss_pred             ccceeEeeEec-cCCcceeeeeecc--cccc-ccceeeecCCCC-CEEEEEEcCCCCeEEEEeeCCeEEE-EeCCCCc-e
Q psy11524         43 YDGTVINYPIS-PYISVLHSYAASH--SWPQ-ALSLCRTLNVSP-PVYSAAWSPDSNKVLLTQAKSLVIK-PLSPNNK-A  115 (323)
Q Consensus        43 ~~~~v~~~~~~-~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~~~~~v~-~~~~~~~-~  115 (323)
                      |...+.++.|+ |||+.++......  .|+. .........|.. .+..++|+ ||+.|++++. +..++ +|+..+. .
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~-~~~l~~~~d~~~~~~  371 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR-EGDFLGIYDYRTGKA  371 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET-TEEEEEEEETTTCCE
T ss_pred             cccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC-CCceEEEEECCCCCc
Confidence            44568899999 9998776544211  1332 222233334666 89999999 9999999877 46888 9988765 4


Q ss_pred             eEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCee-eEeecCCCceeEEEEecCCCEEEEEeC-C------
Q psy11524        116 TKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQL-YSSLTHDHPISSLAWAPGGDMFAVGSY-N------  187 (323)
Q Consensus       116 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~-~~~~~~~~~v~~~~~~p~~~~l~~~~~-~------  187 (323)
                      ..+..|...+..++|+|||++|++++.++.|+   +||+.+... .....+...+.+++|+|||++|++++. +      
T Consensus       372 ~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~---~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~  448 (1045)
T 1k32_A          372 EKFEENLGNVFAMGVDRNGKFAVVANDRFEIM---TVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG  448 (1045)
T ss_dssp             EECCCCCCSEEEEEECTTSSEEEEEETTSEEE---EEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred             eEecCCccceeeeEECCCCCEEEEECCCCeEE---EEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccC
Confidence            55567788999999999999999999999999   999975444 444478888999999999999887764 2      


Q ss_pred             ----eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCce-----------------------
Q psy11524        188 ----TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSS-----------------------  239 (323)
Q Consensus       188 ----~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~-----------------------  239 (323)
                          .|++||+.+.....+..+...+..++|+|+|++|++++.++ ..+|+......                       
T Consensus       449 ~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (1045)
T 1k32_A          449 YVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL  528 (1045)
T ss_dssp             CCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGC
T ss_pred             CCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCcccc
Confidence                89999998776777777888899999999999999999877 77776432211                       


Q ss_pred             ------------------eeeecCCCCccceEEEEEccCCCCccceEEE-----------EeC--CCCeEEEecccccCC
Q psy11524        240 ------------------SNVTAPLSHSHEITQLAVNQTGSLQERHVAF-----------IDK--NRDLYLSMWSHSLDK  288 (323)
Q Consensus       240 ------------------~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~-----------~~~--~~~~~~~~~~~~~~~  288 (323)
                                        .....+..+...+..++++|++    ..+.+           .+.  ...+..|++......
T Consensus       529 ~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg----~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~  604 (1045)
T 1k32_A          529 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS----ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT  604 (1045)
T ss_dssp             CCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSE----EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE
T ss_pred             CcCccccccccccccCHhHceEEcCCCCCChhheEEcCCC----eEEEEecccCcccccccccCCCceEEEEECCCCcEE
Confidence                              0001133455678899999987    55554           122  234555555543111


Q ss_pred             CCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        289 PDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       289 ~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      .-...+.+++|||||+.|++++.+ .|++|++.+
T Consensus       605 ~l~~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~  637 (1045)
T 1k32_A          605 EVKNNLTDLRLSADRKTVMVRKDD-GKIYTFPLE  637 (1045)
T ss_dssp             EEEEEEEEEEECTTSCEEEEEETT-SCEEEEESS
T ss_pred             EeecCcceEEECCCCCEEEEEcCC-cEEEEeCcc
Confidence            102567899999999999998866 799999854

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=6.9e-22  Score=165.81  Aligned_cols=258  Identities=8%  Similarity=0.014  Sum_probs=184.2

Q ss_pred             ccceeEeeEeccCCcceeeeeecc----------ccc-cccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCC
Q psy11524         43 YDGTVINYPISPYISVLHSYAASH----------SWP-QALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSP  111 (323)
Q Consensus        43 ~~~~v~~~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~  111 (323)
                      ....+..+.++|+++.++.....+          .|| .+.+..+.+.....+..++|+|+|++++++...++.|.+||.
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            345677899999997775443221          244 344455555556678899999999988887776679999998


Q ss_pred             CCc--eeEeeccCC---------CeEEEEECCCCCEEEEEc--CCCceEeeeEEeCCCC-eeeEeecCCCceeEEEEecC
Q psy11524        112 NNK--ATKWQAHDG---------LILKVAWCSSTDLILSGG--EDCKYKASFVWDTDGR-QLYSSLTHDHPISSLAWAPG  177 (323)
Q Consensus       112 ~~~--~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~d~~i~~i~v~d~~~~-~~~~~~~~~~~v~~~~~~p~  177 (323)
                      .+.  ...+..+..         .+.+++|+|+|+++++++  .++.|.   +||++.. ....+..+...+.+++|+|+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~---~~d~~~~~~~~~~~~~~~~~~~~~~s~d  195 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIW---VVDGGNIKLKTAIQNTGKMSTGLALDSE  195 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEE---EEETTTTEEEEEECCCCTTCCCCEEETT
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEE---EEcCCCCceEEEecCCCCccceEEECCC
Confidence            765  344443322         278899999999877776  478899   9999744 44445435566889999999


Q ss_pred             CCEEEEEeCC-eEEEEeCCCCeee-ecC----CCCccEEEEEEcCCCCEEEEEecC-c-EEEEEcCCCceeeeecCCCCc
Q psy11524        178 GDMFAVGSYN-TLRLCDKVGWSHS-LDK----PDTGSVYDLVWSNDATQIAGACAN-V-IHIFDISSSSSSNVTAPLSHS  249 (323)
Q Consensus       178 ~~~l~~~~~~-~i~i~d~~~~~~~-~~~----~~~~~v~~~~~~~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~~~~~  249 (323)
                      |+++++++.+ .+.+||+.+.... ...    ++...+..++|+|+|+++++++.+ + |.+||..+++.+..+..  ..
T Consensus       196 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~  273 (353)
T 3vgz_A          196 GKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA--PE  273 (353)
T ss_dssp             TTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC--SS
T ss_pred             CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc--CC
Confidence            9999988885 9999998765433 222    234568889999999988877765 6 99999999998876422  21


Q ss_pred             cceEEEEEccCCCCccceEEEEe-CCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecC
Q psy11524        250 HEITQLAVNQTGSLQERHVAFID-KNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACAN  312 (323)
Q Consensus       250 ~~v~~~~~~p~g~~~d~~l~~~~-~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~d  312 (323)
                        ...++|+|++    +.+.+.+ .++.+.+|+....    .... ...+.+++|+|+|++|+.+..+
T Consensus       274 --~~~~~~s~dg----~~l~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          274 --SLAVLFNPAR----NEAYVTHRQAGKVSVIDAKSYKVVKTFDT-PTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             --CCCEEEETTT----TEEEEEETTTTEEEEEETTTTEEEEEEEC-CSEEEEEEECTTSCEEEEEEEC
T ss_pred             --CceEEECCCC----CEEEEEECCCCeEEEEECCCCeEEEEEec-CCCCCeEEEcCCCCEEEEEEcc
Confidence              2568999998    5555555 4566777776543    1122 3467999999999977766554

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=6.2e-22  Score=165.97  Aligned_cols=234  Identities=12%  Similarity=0.023  Sum_probs=160.0

Q ss_pred             cCCCCCEEEEEEcCCCCeEEEEeeC--CeEEEEeCCCCc----eeEeeccCCCeEEEEECCCCCEEEEEc-CCCceEeee
Q psy11524         78 LNVSPPVYSAAWSPDSNKVLLTQAK--SLVIKPLSPNNK----ATKWQAHDGLILKVAWCSSTDLILSGG-EDCKYKASF  150 (323)
Q Consensus        78 ~~~~~~v~~~~~sp~~~~l~~~~~~--~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~i~  150 (323)
                      ..+...+..++|+|+|+ |++++..  ++.|++|+....    +..+..+...+..++|+|||++|++++ .++.+.   
T Consensus        36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~---  111 (347)
T 3hfq_A           36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAE---  111 (347)
T ss_dssp             EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEE---
T ss_pred             eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEE---
Confidence            34566778899999999 6666542  478999998544    223345677888999999999888887 678999   


Q ss_pred             EEeCC-CCee---eEeec---------CCCceeEEEEecCCCEEEEEeC-C-eEEEEeCC-CCeee---e-cCCCCccEE
Q psy11524        151 VWDTD-GRQL---YSSLT---------HDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKV-GWSHS---L-DKPDTGSVY  210 (323)
Q Consensus       151 v~d~~-~~~~---~~~~~---------~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~-~~~~~---~-~~~~~~~v~  210 (323)
                      +|+++ ....   ..+..         ....+.+++|+|+|+ ++++.. + .|++||+. +..+.   . .......+.
T Consensus       112 v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~  190 (347)
T 3hfq_A          112 VMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR  190 (347)
T ss_dssp             EEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred             EEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence            99984 2222   22221         112478899999999 555444 4 99999987 33222   1 222334678


Q ss_pred             EEEEcCCCCEEEEEe-cCc-EEEEEcCC--Ccee--eeecCCCC----ccceEEEEEccCCCCccceEEEE-eCCCCeEE
Q psy11524        211 DLVWSNDATQIAGAC-ANV-IHIFDISS--SSSS--NVTAPLSH----SHEITQLAVNQTGSLQERHVAFI-DKNRDLYL  279 (323)
Q Consensus       211 ~~~~~~~~~~l~~~~-~d~-i~iwd~~~--~~~~--~~~~~~~~----~~~v~~~~~~p~g~~~d~~l~~~-~~~~~~~~  279 (323)
                      .++|+|+|++|++++ .++ |.+|++..  ++..  ........    ...+..++|+|+|    +.|.+. ..++.+.+
T Consensus       191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG----~~l~v~~~~~~~v~v  266 (347)
T 3hfq_A          191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG----HFLYVSNRGYNTLAV  266 (347)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS----CEEEEEEETTTEEEE
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC----CEEEEEeCCCCEEEE
Confidence            899999999777755 456 99999874  4432  12101111    1458899999999    666554 44677888


Q ss_pred             Eecccc-------cCCCCccceeEEEEeeCCCeeEeeecC-CeEEEEEe
Q psy11524        280 SMWSHS-------LDKPDTGSVYDLVWSSDATQIAGACAN-GSLLLGTI  320 (323)
Q Consensus       280 ~~~~~~-------~~~~~~~~v~~~~~s~~g~~l~s~~~d-g~i~~~~l  320 (323)
                      |++...       ....+...+..++|+|||++|++++.+ +.|.+|++
T Consensus       267 ~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          267 FAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             EEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence            887521       112234568899999999988877754 89999976

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=1.1e-21  Score=160.11  Aligned_cols=209  Identities=11%  Similarity=0.048  Sum_probs=158.2

Q ss_pred             eCCeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC-CeeeEee-cC-CCceeEEEEec
Q psy11524        101 AKSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG-RQLYSSL-TH-DHPISSLAWAP  176 (323)
Q Consensus       101 ~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~-~~~~~~~-~~-~~~v~~~~~~p  176 (323)
                      ..++.|++|+.... ...+..|...+.+++|+|+|++|++++ ++.|.   +||+++ .....+. .+ ...+.+++|+|
T Consensus        19 ~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~---~~d~~~~~~~~~~~~~~~~~~~~~~~~sp   94 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLY---RLSLAGDPSPEKVDTGFATICNNDHGISP   94 (297)
T ss_dssp             CCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEE---EEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred             CcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEE---EEeCCCCCCceEeccccccccccceEECC
Confidence            34579999998776 556777899999999999999999886 78888   999976 5444443 33 36788999999


Q ss_pred             CCCEEEEEeC--C---eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEE-EEecCc-EEEEEcC--CCceeeeecCCC
Q psy11524        177 GGDMFAVGSY--N---TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIA-GACANV-IHIFDIS--SSSSSNVTAPLS  247 (323)
Q Consensus       177 ~~~~l~~~~~--~---~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~-i~iwd~~--~~~~~~~~~~~~  247 (323)
                      ++++|++++.  +   .|..++..+.....+..+ ..+..++|+|+|++|+ ++..++ +++|++.  +++. ..  +..
T Consensus        95 dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~--~~~  170 (297)
T 2ojh_A           95 DGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TR--LTH  170 (297)
T ss_dssp             TSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EE--CCC
T ss_pred             CCCEEEEEEeCCCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eE--ccc
Confidence            9999999883  2   555666665544444433 3488999999999887 677788 8999853  4443 33  567


Q ss_pred             CccceEEEEEccCCCCccceEEEEe-CCCCeEEEecccc-----cCCCCccceeEEEEeeCCCeeEeeecC---------
Q psy11524        248 HSHEITQLAVNQTGSLQERHVAFID-KNRDLYLSMWSHS-----LDKPDTGSVYDLVWSSDATQIAGACAN---------  312 (323)
Q Consensus       248 ~~~~v~~~~~~p~g~~~d~~l~~~~-~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g~~l~s~~~d---------  312 (323)
                      +...+.+++|+|++    ..+++.. .++...+|.+...     ....|...+..++|+|+|++|++++.+         
T Consensus       171 ~~~~~~~~~~s~dg----~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~  246 (297)
T 2ojh_A          171 GEGRNDGPDYSPDG----RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRD  246 (297)
T ss_dssp             SSSCEEEEEECTTS----SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSS
T ss_pred             CCCccccceECCCC----CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccccc
Confidence            77889999999998    6666654 4778888887521     334456788999999999999988776         


Q ss_pred             --CeEEEEEee
Q psy11524        313 --GSLLLGTII  321 (323)
Q Consensus       313 --g~i~~~~l~  321 (323)
                        +.|++|++.
T Consensus       247 ~~~~l~~~d~~  257 (297)
T 2ojh_A          247 LDVRVQLMDMD  257 (297)
T ss_dssp             EEEEEEEEETT
T ss_pred             CceEEEEEecC
Confidence              568999864

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.91  E-value=2.1e-23  Score=186.98  Aligned_cols=228  Identities=14%  Similarity=0.061  Sum_probs=167.7

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeeccC-CCeEEEEECCCCCEEEEEcC---CCceEeeeEEeC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQAHD-GLILKVAWCSSTDLILSGGE---DCKYKASFVWDT  154 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---d~~i~~i~v~d~  154 (323)
                      +..+|++++|+|||++||+++..++.+.+|+..+. ...+..+. ..+..++|+|| +.+++++.   +.... ||.++.
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~-l~~~~~   97 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHA-LFKVNT   97 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEE-EEEEET
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceE-EEEEec
Confidence            35679999999999999999874578999987555 55666666 58999999999 77777664   33333 335666


Q ss_pred             --CCCeeeEeecCCCceeEEEEecCCCE--EEEEeCCeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecC---
Q psy11524        155 --DGRQLYSSLTHDHPISSLAWAPGGDM--FAVGSYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN---  227 (323)
Q Consensus       155 --~~~~~~~~~~~~~~v~~~~~~p~~~~--l~~~~~~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---  227 (323)
                        .+... .+.... .+...+|+|+|+.  +++++.+.+.+||+.+.....+..+..  .+++|+|||++|++++.+   
T Consensus        98 ~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~  173 (582)
T 3o4h_A           98 SRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGG  173 (582)
T ss_dssp             TSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETT
T ss_pred             cCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCC
Confidence              44443 333322 3456789998864  333334666699988665544433333  889999999999988876   


Q ss_pred             -c-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCC--CeEEEecccc---cCCCCccceeEEE--
Q psy11524        228 -V-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNR--DLYLSMWSHS---LDKPDTGSVYDLV--  298 (323)
Q Consensus       228 -~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~--~~~~~~~~~~---~~~~~~~~v~~~~--  298 (323)
                       . |++||+.+++...   +..+...+..++|+|||    +.|+..+.++  .+++|++.+.   ....|...+..++  
T Consensus       174 ~~~i~~~d~~~g~~~~---l~~~~~~~~~~~~SpDG----~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  246 (582)
T 3o4h_A          174 RVSLFTSNLSSGGLRV---FDSGEGSFSSASISPGM----KVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPT  246 (582)
T ss_dssp             EEEEEEEETTTCCCEE---ECCSSCEEEEEEECTTS----CEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCS
T ss_pred             CeEEEEEcCCCCCceE---eecCCCccccceECCCC----CEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhc
Confidence             7 9999999888664   57788889999999999    7777767777  6777777654   2334555566666  


Q ss_pred             ------EeeCCCeeEeeecCCeEEEEEe
Q psy11524        299 ------WSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       299 ------~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                            |+|||.++++++.||.+++|++
T Consensus       247 ~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          247 AITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             EEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             cccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence                  9999988899999999999986

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.91  E-value=2.7e-22  Score=179.76  Aligned_cols=255  Identities=10%  Similarity=0.019  Sum_probs=183.8

Q ss_pred             cceeEeeEeccCCcceeeeee-cc---ccccccceeeec-CCC-CCEEEEEEcCCCCeEEEEee----CCeEEEEeCC--
Q psy11524         44 DGTVINYPISPYISVLHSYAA-SH---SWPQALSLCRTL-NVS-PPVYSAAWSPDSNKVLLTQA----KSLVIKPLSP--  111 (323)
Q Consensus        44 ~~~v~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~-~~~-~~v~~~~~sp~~~~l~~~~~----~~~~v~~~~~--  111 (323)
                      ..+|+++.|+|||+.++.... ++   .|+-.....+.+ .+. ..+..++|+|| +.++++..    +...++.++.  
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~   99 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR   99 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence            457999999999987775443 22   354322222333 344 58999999999 65555543    2235666666  


Q ss_pred             CCceeEeeccCCCeEEEEECCCCCE-EEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC----
Q psy11524        112 NNKATKWQAHDGLILKVAWCSSTDL-ILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY----  186 (323)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~----  186 (323)
                      .+....+.... .+...+|+|||+. +++.+.++.+.   +||+++.....+..+..  .+++|+|||+++++++.    
T Consensus       100 ~g~~~~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~---l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~  173 (582)
T 3o4h_A          100 PGEEQRLEAVK-PMRILSGVDTGEAVVFTGATEDRVA---LYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGG  173 (582)
T ss_dssp             TTCCEECTTSC-SBEEEEEEECSSCEEEEEECSSCEE---EEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETT
T ss_pred             CCccccccCCC-CceeeeeCCCCCeEEEEecCCCCce---EEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCC
Confidence            44444443332 3446788988863 34444556677   99997666666655444  88999999999996654    


Q ss_pred             -CeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc---EEEEEcCCCceeeeecCCCCccceEEEE------
Q psy11524        187 -NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV---IHIFDISSSSSSNVTAPLSHSHEITQLA------  256 (323)
Q Consensus       187 -~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~------  256 (323)
                       ..|++||+.+.....+..+...+..++|+|||++|+++..++   |++||+.+++.. .  +..+...+..++      
T Consensus       174 ~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~--~~~~~~~~~~~~~~~~~~  250 (582)
T 3o4h_A          174 RVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-D--LELPSKDFSSYRPTAITW  250 (582)
T ss_dssp             EEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-E--CCCSCSHHHHHCCSEEEE
T ss_pred             CeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-E--ccCCCcChhhhhhccccc
Confidence             269999988766666677888899999999999999777665   899999988877 4  677777777677      


Q ss_pred             --EccCCCCccceEEEEeCCCCeEEEecccccCCCCccceeEEEEeeCCCeeEeeecCCe
Q psy11524        257 --VNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGS  314 (323)
Q Consensus       257 --~~p~g~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~  314 (323)
                        |+|+|    ..+...+.++.+.+|.+ ......+.+.+.+++|+ +|+.+++++.+..
T Consensus       251 ~~~spdg----~~~~~~~~~g~~~l~~~-g~~~~~~~~~v~~~~~s-dg~~l~~~s~~~~  304 (582)
T 3o4h_A          251 LGYLPDG----RLAVVARREGRSAVFID-GERVEAPQGNHGRVVLW-RGKLVTSHTSLST  304 (582)
T ss_dssp             EEECTTS----CEEEEEEETTEEEEEET-TEEECCCSSEEEEEEEE-TTEEEEEEEETTE
T ss_pred             eeEcCCC----cEEEEEEcCCcEEEEEE-CCeeccCCCceEEEEec-CCEEEEEEcCCCC
Confidence              99998    78888888999999998 32222345778999999 9999998888755

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=5.4e-22  Score=175.45  Aligned_cols=262  Identities=8%  Similarity=-0.005  Sum_probs=181.5

Q ss_pred             EeccCCcceeeeeecc---ccc-cccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCC--CCc--eeEeeccC
Q psy11524         51 PISPYISVLHSYAASH---SWP-QALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSP--NNK--ATKWQAHD  122 (323)
Q Consensus        51 ~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~--~~~--~~~~~~~~  122 (323)
                      .++|++..++....++   .|| .+.++..++.....+..++|+|+|++|++++.+ +.|.+||.  .+.  +..+. +.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~t~~~~~~i~-~g  221 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEIK-IG  221 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEEE-CC
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCC-CeEEEEECcCCCCcEEEEEe-cC
Confidence            4778774333322222   255 345566666634449999999999999999887 69999999  443  34444 55


Q ss_pred             CCeEEEEECC----CCCEEEEEcC-CCceEeeeEEeCC-CCeeeEeecC-----------CCceeEEEEecCCCEEEEEe
Q psy11524        123 GLILKVAWCS----STDLILSGGE-DCKYKASFVWDTD-GRQLYSSLTH-----------DHPISSLAWAPGGDMFAVGS  185 (323)
Q Consensus       123 ~~v~~~~~~~----~~~~l~~~~~-d~~i~~i~v~d~~-~~~~~~~~~~-----------~~~v~~~~~~p~~~~l~~~~  185 (323)
                      ..+..++|+|    ||+++++++. +++|.   +||.. .+.+..+..+           ...+..+.++|++..+++..
T Consensus       222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~---v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~  298 (543)
T 1nir_A          222 IEARSVESSKFKGYEDRYTIAGAYWPPQFA---IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV  298 (543)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEE---EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             CCcceEEeCCCcCCCCCEEEEEEccCCeEE---EEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence            6689999999    9999999885 89999   99985 5566555432           23688999999887766665


Q ss_pred             C-C-eEEEEeCCCC-eee-ecCCCCccEEEEEEcCCCCEEEEEec-Cc-EEEEEcCCCceeeeecCC--CCccceEEEEE
Q psy11524        186 Y-N-TLRLCDKVGW-SHS-LDKPDTGSVYDLVWSNDATQIAGACA-NV-IHIFDISSSSSSNVTAPL--SHSHEITQLAV  257 (323)
Q Consensus       186 ~-~-~i~i~d~~~~-~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~-d~-i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~  257 (323)
                      . + .|.+||.... .+. ....+...+..+.|+|+|+++++++. ++ |.+||..+++++..+...  .|.+....+ +
T Consensus       299 ~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~  377 (543)
T 1nir_A          299 KETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-V  377 (543)
T ss_dssp             TTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-E
T ss_pred             CCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-C
Confidence            5 4 9999998743 211 12235567889999999998876654 66 999999999988774221  143333333 4


Q ss_pred             ccCCCCccceEEEEe-CCCCeEEEeccc-------c----cCCCCccceeEEEEeeCCCeeEeee-------cCCeEEEE
Q psy11524        258 NQTGSLQERHVAFID-KNRDLYLSMWSH-------S----LDKPDTGSVYDLVWSSDATQIAGAC-------ANGSLLLG  318 (323)
Q Consensus       258 ~p~g~~~d~~l~~~~-~~~~~~~~~~~~-------~----~~~~~~~~v~~~~~s~~g~~l~s~~-------~dg~i~~~  318 (323)
                      +|++.   ..+++.. .++.+.+|+...       .    ..+.|...+..++++|+|++|++++       .+++|.+|
T Consensus       378 ~p~~g---~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~  454 (543)
T 1nir_A          378 HPKYG---PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVF  454 (543)
T ss_dssp             ETTTE---EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEE
T ss_pred             CCCCc---cEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEE
Confidence            67741   2223332 345666666654       1    2334567788899999999999987       37899999


Q ss_pred             Eee
Q psy11524        319 TII  321 (323)
Q Consensus       319 ~l~  321 (323)
                      ++.
T Consensus       455 d~~  457 (543)
T 1nir_A          455 DLK  457 (543)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            975

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=1.1e-22  Score=169.49  Aligned_cols=235  Identities=11%  Similarity=0.007  Sum_probs=166.1

Q ss_pred             ceeeecCCCC---CEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeec-c----CCCeEEEEECCCCCEEEEEc-
Q psy11524         73 SLCRTLNVSP---PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQA-H----DGLILKVAWCSSTDLILSGG-  141 (323)
Q Consensus        73 ~~~~~~~~~~---~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~-~----~~~v~~~~~~~~~~~l~~~~-  141 (323)
                      +..+.+....   .+..++|+|+|+++++++..++.|++||..+.  ...+.. +    ...+..++|+|+|+++++++ 
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  101 (337)
T 1pby_B           22 AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYES  101 (337)
T ss_dssp             EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEE
T ss_pred             cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEec
Confidence            3444444444   58899999999988877766679999998655  333332 1    12567899999999988886 


Q ss_pred             -----------CCCceEeeeEEeCCCCee-eEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCeee-ecCCCCcc
Q psy11524        142 -----------EDCKYKASFVWDTDGRQL-YSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHS-LDKPDTGS  208 (323)
Q Consensus       142 -----------~d~~i~~i~v~d~~~~~~-~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~~~-~~~~~~~~  208 (323)
                                 .++.|.   +||+.+... ..+. ....+.+++|+|+|++++++ .+.|++||+.+.... ....+. .
T Consensus       102 ~~~~~~~~~~~~~~~i~---v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~-~  175 (337)
T 1pby_B          102 PVRLELTHFEVQPTRVA---LYDAETLSRRKAFE-APRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQS-W  175 (337)
T ss_dssp             EEEECSSCEEECCCEEE---EEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTT-T
T ss_pred             ccccccccccccCceEE---EEECCCCcEEEEEe-CCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeeccc-c
Confidence                       578899   999975444 4443 35568889999999988887 458999998865433 332222 1


Q ss_pred             EEEEEEcCCCCEEEEEecCc-------------------------EEEEEcCCCceeeeecCCCCccceEEEEEccCCCC
Q psy11524        209 VYDLVWSNDATQIAGACANV-------------------------IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSL  263 (323)
Q Consensus       209 v~~~~~~~~~~~l~~~~~d~-------------------------i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~  263 (323)
                      ...+.|+|+|++++..+.++                         |.+||+.+++.. ...+..+...+..++|+|++  
T Consensus       176 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg--  252 (337)
T 1pby_B          176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAK--  252 (337)
T ss_dssp             TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTS--
T ss_pred             CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCC--
Confidence            11337899998776655433                         379999988775 32244555678899999998  


Q ss_pred             ccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        264 QERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       264 ~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                        +.+.+.  ++.+.+|++...    .... ...+.+++|+|+|++|++++.++.|.+|++.
T Consensus       253 --~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~  309 (337)
T 1pby_B          253 --TRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             --SEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred             --CEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence              566555  466777776543    1111 3567899999999999999999999999974

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=2.2e-21  Score=162.75  Aligned_cols=234  Identities=10%  Similarity=0.080  Sum_probs=171.4

Q ss_pred             cCCCCCEEEEEEcCCCCeEEEEeeC------CeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEE-EEcCCCceEe
Q psy11524         78 LNVSPPVYSAAWSPDSNKVLLTQAK------SLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLIL-SGGEDCKYKA  148 (323)
Q Consensus        78 ~~~~~~v~~~~~sp~~~~l~~~~~~------~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~  148 (323)
                      ......+..++|+|+|+++++++..      ++.|++||..+.  ...+. ....+..++|+|+|++++ +...++.|. 
T Consensus        37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~-  114 (353)
T 3vgz_A           37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH-NDLKPFGATINNTTQTLWFGNTVNSAVT-  114 (353)
T ss_dssp             EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE-ESSCCCSEEEETTTTEEEEEETTTTEEE-
T ss_pred             hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe-cCCCcceEEECCCCCEEEEEecCCCEEE-
Confidence            3456778999999999999888744      579999998765  33333 345577899999998555 455578999 


Q ss_pred             eeEEeCC-CCeeeEeecCCC---------ceeEEEEecCCCEEEEEe-C-C-eEEEEeCCCCeee-ecCCCCccEEEEEE
Q psy11524        149 SFVWDTD-GRQLYSSLTHDH---------PISSLAWAPGGDMFAVGS-Y-N-TLRLCDKVGWSHS-LDKPDTGSVYDLVW  214 (323)
Q Consensus       149 i~v~d~~-~~~~~~~~~~~~---------~v~~~~~~p~~~~l~~~~-~-~-~i~i~d~~~~~~~-~~~~~~~~v~~~~~  214 (323)
                        +||.. ++.+..+..+..         .+.+++|+|+|+++++++ . + .|.+||..+.... ....+...+..++|
T Consensus       115 --~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  192 (353)
T 3vgz_A          115 --AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL  192 (353)
T ss_dssp             --EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred             --EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence              99996 555555554332         268899999999887776 2 4 8999998865444 34335556889999


Q ss_pred             cCCCCEEEEEecCc-EEEEEcCCCceeeeecCC--CCccceEEEEEccCCCCccceEEEEeCC-CCeEEEecccc----c
Q psy11524        215 SNDATQIAGACANV-IHIFDISSSSSSNVTAPL--SHSHEITQLAVNQTGSLQERHVAFIDKN-RDLYLSMWSHS----L  286 (323)
Q Consensus       215 ~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~p~g~~~d~~l~~~~~~-~~~~~~~~~~~----~  286 (323)
                      +|+|++|++++.++ |.+||..+++.+..+...  ++...+..++|+|++    +.+.+.+.. +.+.+|+....    .
T Consensus       193 s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg----~~l~~~~~~~~~v~~~d~~~~~~~~~  268 (353)
T 3vgz_A          193 DSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTAR----QRAFITDSKAAEVLVVDTRNGNILAK  268 (353)
T ss_dssp             ETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTT----TEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCC----CEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            99999999999999 999999999887764221  244567889999998    666665544 66777777553    1


Q ss_pred             CCCCccceeEEEEeeCCCeeEeee-cCCeEEEEEee
Q psy11524        287 DKPDTGSVYDLVWSSDATQIAGAC-ANGSLLLGTII  321 (323)
Q Consensus       287 ~~~~~~~v~~~~~s~~g~~l~s~~-~dg~i~~~~l~  321 (323)
                      ...  .....++|+|+|++|+.+. .++.|.+|++.
T Consensus       269 ~~~--~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  302 (353)
T 3vgz_A          269 VAA--PESLAVLFNPARNEAYVTHRQAGKVSVIDAK  302 (353)
T ss_dssp             EEC--SSCCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEc--CCCceEEECCCCCEEEEEECCCCeEEEEECC
Confidence            111  1225799999999666554 78999999874

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=1.3e-21  Score=179.28  Aligned_cols=220  Identities=10%  Similarity=0.063  Sum_probs=160.8

Q ss_pred             CCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC----
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG----  156 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~----  156 (323)
                      ..|.+++|||| +.++++. + +.+++||..+. ...+..+...+.+++|+|||++|+++ .++.|.   +|++.+    
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~-~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~---v~~~~~~~~~  154 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-Q-GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLY---IARGGKLGEG  154 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-T-TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEE---EEECBCTTSC
T ss_pred             cCceeEEECCC-CeEEEEE-C-CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEE---EEecCccccc
Confidence            67999999999 7777664 3 59999998766 55566677888899999999999985 678898   999965    


Q ss_pred             -CeeeEeec-CCCc--------------eeEEEEecCCCEEEEEe---------------------------------CC
Q psy11524        157 -RQLYSSLT-HDHP--------------ISSLAWAPGGDMFAVGS---------------------------------YN  187 (323)
Q Consensus       157 -~~~~~~~~-~~~~--------------v~~~~~~p~~~~l~~~~---------------------------------~~  187 (323)
                       .....+.. ....              +.+++|+|||++|++++                                 .+
T Consensus       155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~  234 (706)
T 2z3z_A          155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH  234 (706)
T ss_dssp             CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred             CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence             44444332 2222              48899999999999987                                 33


Q ss_pred             -eEEEEeCCCCeeeecC---CCCccEEEEEEcCCCCEEEEEecC-----c-EEEEEcCCCceeeeecCCCCc---cceEE
Q psy11524        188 -TLRLCDKVGWSHSLDK---PDTGSVYDLVWSNDATQIAGACAN-----V-IHIFDISSSSSSNVTAPLSHS---HEITQ  254 (323)
Q Consensus       188 -~i~i~d~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d-----~-i~iwd~~~~~~~~~~~~~~~~---~~v~~  254 (323)
                       .|++||+.+.......   .+...+.+++|+|||++|++++.+     . |++||+.+++....+....+.   ..+..
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~  314 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP  314 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred             eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence             8999999876544332   456779999999999999887654     4 999999998433321011122   13467


Q ss_pred             EEEcc--CCCCccceEEEEeCCCCeEEEeccc-c----cCCCCccceeE-EEEeeCCCeeEeeecC
Q psy11524        255 LAVNQ--TGSLQERHVAFIDKNRDLYLSMWSH-S----LDKPDTGSVYD-LVWSSDATQIAGACAN  312 (323)
Q Consensus       255 ~~~~p--~g~~~d~~l~~~~~~~~~~~~~~~~-~----~~~~~~~~v~~-~~~s~~g~~l~s~~~d  312 (323)
                      ++|+|  +|    +.+.+.+.++...+|.+.. .    ....|...+.+ ++|+|+|+.|+.++.+
T Consensus       315 ~~~sp~~dg----~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~  376 (706)
T 2z3z_A          315 LTFLPGSNN----QFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE  376 (706)
T ss_dssp             CEECTTCSS----EEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred             ceeecCCCC----EEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence            89999  98    7777777888888887652 1    23344566776 8999999987755544

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=1.6e-22  Score=185.80  Aligned_cols=227  Identities=14%  Similarity=0.135  Sum_probs=160.1

Q ss_pred             CCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCC---CeEEEEECCCCCEEEEEcCC---------CceE
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDG---LILKVAWCSSTDLILSGGED---------CKYK  147 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------~~i~  147 (323)
                      ..+.+++|+|||+++++ +.+ +.|++|+..+.  ...+..|..   .|.+++|||||++|++++.+         +.+.
T Consensus        17 ~~~~~~~~spdg~~~~~-~~d-g~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~   94 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQK-GTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV   94 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSS-SCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred             ccccccEEcCCCcEEEE-eCC-CCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence            45788999999997765 444 69999998765  334444543   48999999999999999875         5566


Q ss_pred             eeeEEeCCCCeeeEeec---CCCceeEEEEecCCCEEEEEeCCeEEEEeCCCC-eeeecCCCCcc---------------
Q psy11524        148 ASFVWDTDGRQLYSSLT---HDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGW-SHSLDKPDTGS---------------  208 (323)
Q Consensus       148 ~i~v~d~~~~~~~~~~~---~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~-~~~~~~~~~~~---------------  208 (323)
                         +||+++.....+..   +...+..++|||||+.|++++.+.|++||+.+. .......+...               
T Consensus        95 ---~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~  171 (723)
T 1xfd_A           95 ---LSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI  171 (723)
T ss_dssp             ---EEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred             ---EEECCCCceEeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEe
Confidence               99997655554543   333488999999999999999889999998754 33333333332               


Q ss_pred             ---EEEEEEcCCCCEEEEEecC----------------------------------c-EEEEEcCCCceeeeecCCCC--
Q psy11524        209 ---VYDLVWSNDATQIAGACAN----------------------------------V-IHIFDISSSSSSNVTAPLSH--  248 (323)
Q Consensus       209 ---v~~~~~~~~~~~l~~~~~d----------------------------------~-i~iwd~~~~~~~~~~~~~~~--  248 (323)
                         +.+++|||||++|++++.+                                  . |++||+.+++....  +..+  
T Consensus       172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~--l~~~~~  249 (723)
T 1xfd_A          172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLE--MMPPDD  249 (723)
T ss_dssp             SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEE--CCCCCC
T ss_pred             ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEE--eeCCcc
Confidence               3789999999999988643                                  3 88999988876444  3433  


Q ss_pred             ----ccceEEEEEccCCCCccceEEEEeCC----CCeEEEecccc----cC-CCCccce----eEEEEeeCCCeeEe--e
Q psy11524        249 ----SHEITQLAVNQTGSLQERHVAFIDKN----RDLYLSMWSHS----LD-KPDTGSV----YDLVWSSDATQIAG--A  309 (323)
Q Consensus       249 ----~~~v~~~~~~p~g~~~d~~l~~~~~~----~~~~~~~~~~~----~~-~~~~~~v----~~~~~s~~g~~l~s--~  309 (323)
                          ...+..++|+|||    +.++.+...    ..+.+|++.+.    +. ..+...+    ..++|||||+.|+.  +
T Consensus       250 ~~~~~~~~~~~~~SpDg----~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  325 (723)
T 1xfd_A          250 PRMREYYITMVKWATST----KVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRA  325 (723)
T ss_dssp             GGGSSEEEEEEEESSSS----EEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEE
T ss_pred             CCCccceeEEEEEeCCC----eEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEe
Confidence                5678999999998    666555332    34566666543    11 1122333    37899999998775  4


Q ss_pred             ecCC------eEEEEE
Q psy11524        310 CANG------SLLLGT  319 (323)
Q Consensus       310 ~~dg------~i~~~~  319 (323)
                      ..++      .|.+|+
T Consensus       326 ~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          326 IPQGGRGKFYHITVSS  341 (723)
T ss_dssp             ECCSSSSCEEEEEEEC
T ss_pred             cccCCCcceeEEEEEe
Confidence            5667      455555

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.89  E-value=6e-20  Score=154.74  Aligned_cols=231  Identities=6%  Similarity=0.022  Sum_probs=159.7

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeC---CeEEEEeCCCC--c-ee---EeeccCCCeEEEEECCCCCEEEEEc-CCCceEee
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAK---SLVIKPLSPNN--K-AT---KWQAHDGLILKVAWCSSTDLILSGG-EDCKYKAS  149 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~---~~~v~~~~~~~--~-~~---~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~i  149 (323)
                      +...+..++|+|+|++|++++.+   .+.+.+|+...  . ..   ....+...+..+++  ++++|++++ .++.+.  
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~--  123 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSIT--  123 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEE--
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEE--
Confidence            66778889999999999988773   36787776543  2 22   23335566778888  788777666 578899  


Q ss_pred             eEEeCC-CCeeeEe------ec--------CCCceeEEEEecCCCEEEEEeC-C-eEEEEeCCCCe-------e------
Q psy11524        150 FVWDTD-GRQLYSS------LT--------HDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWS-------H------  199 (323)
Q Consensus       150 ~v~d~~-~~~~~~~------~~--------~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~-------~------  199 (323)
                       +|++. ...+..+      .+        +...+.+++|+|+|+++++++. + .+.+|++....       +      
T Consensus       124 -~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~  202 (361)
T 3scy_A          124 -VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTP  202 (361)
T ss_dssp             -EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEE
T ss_pred             -EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccc
Confidence             99985 2222111      11        1234578999999998877776 4 99999876321       1      


Q ss_pred             -eecCCCCccEEEEEEcCCCCEEEEEe-cCc-EEEEEcCCCceee--eec-CCCCccceEEEEEccCCCCccceEEEEeC
Q psy11524        200 -SLDKPDTGSVYDLVWSNDATQIAGAC-ANV-IHIFDISSSSSSN--VTA-PLSHSHEITQLAVNQTGSLQERHVAFIDK  273 (323)
Q Consensus       200 -~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~--~~~-~~~~~~~v~~~~~~p~g~~~d~~l~~~~~  273 (323)
                       .........+..++|+|+|+++++++ .++ |.+||+.+++...  ... ...+......++|+|+|    +.|.+.+.
T Consensus       203 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg----~~l~v~~~  278 (361)
T 3scy_A          203 EAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDG----KYLYASNR  278 (361)
T ss_dssp             EEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTS----SEEEEEEC
T ss_pred             cceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCC----CEEEEECC
Confidence             22333456688999999999888877 467 9999998775422  210 22334456899999999    67766655


Q ss_pred             C--CCeEEEeccc--c------cCCCCccceeEEEEeeCCCeeEeee-cCCeEEEEEe
Q psy11524        274 N--RDLYLSMWSH--S------LDKPDTGSVYDLVWSSDATQIAGAC-ANGSLLLGTI  320 (323)
Q Consensus       274 ~--~~~~~~~~~~--~------~~~~~~~~v~~~~~s~~g~~l~s~~-~dg~i~~~~l  320 (323)
                      .  +.+.+|++..  .      .... ...+.+++|+|||++|++++ .++.|.+|++
T Consensus       279 ~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          279 LKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFER  335 (361)
T ss_dssp             SSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             CCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence            4  6678887741  1      1111 34678999999999888877 6799999876

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=2.5e-20  Score=155.08  Aligned_cols=227  Identities=8%  Similarity=-0.009  Sum_probs=155.6

Q ss_pred             EEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcC-CCceEeeeEEeCCC-Ce-eeE
Q psy11524         87 AAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGE-DCKYKASFVWDTDG-RQ-LYS  161 (323)
Q Consensus        87 ~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~i~v~d~~~-~~-~~~  161 (323)
                      ..|.+++++++++...++.|.+||....  ...+..+...+ .++|+|+|+++++++. ++.|.   +||+.. +. ...
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~---~~d~~~~~~~~~~   78 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLV---QIETQLEPPKVVA   78 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEE---EEECSSSSCEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEE---EEECCCCceeEEe
Confidence            4577778887766666679999998755  34445555566 9999999997766655 88888   999964 44 555


Q ss_pred             eecCCCceeEEEEecCCCEEEEEeCC----eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEec--Cc-EEEEEc
Q psy11524        162 SLTHDHPISSLAWAPGGDMFAVGSYN----TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACA--NV-IHIFDI  234 (323)
Q Consensus       162 ~~~~~~~v~~~~~~p~~~~l~~~~~~----~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~-i~iwd~  234 (323)
                      +..+..+..+++|+|+|++++++..+    .|.+||+.+............+.+++|+|+|++|++++.  +. |.+|++
T Consensus        79 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~  158 (331)
T 3u4y_A           79 IQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKI  158 (331)
T ss_dssp             EEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred             cccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEE
Confidence            55555555559999999998865554    899999886544333334556799999999987666544  44 999998


Q ss_pred             CCCceeeee--cCCCCccceEEEEEccCCCCccceEEEEe-CCCCeEEEecccccC---C---CCccceeEEEEeeCCCe
Q psy11524        235 SSSSSSNVT--APLSHSHEITQLAVNQTGSLQERHVAFID-KNRDLYLSMWSHSLD---K---PDTGSVYDLVWSSDATQ  305 (323)
Q Consensus       235 ~~~~~~~~~--~~~~~~~~v~~~~~~p~g~~~d~~l~~~~-~~~~~~~~~~~~~~~---~---~~~~~v~~~~~s~~g~~  305 (323)
                      .....+...  ...........++|+|+|    +.+.+.+ .++.+.+|++.....   .   .....+..++|+|||++
T Consensus       159 ~~~g~~~~~~~~~~~~~~~~~~~~~spdg----~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  234 (331)
T 3u4y_A          159 DADGVLFDTGQEFISGGTRPFNITFTPDG----NFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGST  234 (331)
T ss_dssp             CTTCCEEEEEEEEECSSSSEEEEEECTTS----SEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSE
T ss_pred             CCCCcEeecCCccccCCCCccceEECCCC----CEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCE
Confidence            764433110  012334567899999998    5555544 456677787765311   0   02456788999999997


Q ss_pred             eEee-ecCCeEEEEEee
Q psy11524        306 IAGA-CANGSLLLGTII  321 (323)
Q Consensus       306 l~s~-~~dg~i~~~~l~  321 (323)
                      |+.+ ..++.|.+|++.
T Consensus       235 l~v~~~~~~~i~~~d~~  251 (331)
T 3u4y_A          235 VYVLTESTVDVFNFNQL  251 (331)
T ss_dssp             EEEECSSEEEEEEEETT
T ss_pred             EEEEEcCCCEEEEEECC
Confidence            7654 457889999864

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=3.7e-21  Score=165.74  Aligned_cols=194  Identities=14%  Similarity=0.072  Sum_probs=142.5

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCC------------cee-----EeeccCCCeEEEEECCCCCEEE----E
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN------------KAT-----KWQAHDGLILKVAWCSSTDLIL----S  139 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~------------~~~-----~~~~~~~~v~~~~~~~~~~~l~----~  139 (323)
                      ...+..+++++++.++++++.+ + +++|+...            ...     ....+...|.+++|+|+|++|+    +
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~d-g-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGAS-G-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETT-E-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCccEEEEecCCCEEEEECCC-E-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence            4568899999999999988666 4 66654211            011     1123567899999999999999    7


Q ss_pred             EcCCCceEeeeEEeCCC---------Ce---eeEeecCCCceeEEEEecC-CCEEEEEeCC-eEEEEeCCCCe-eeecCC
Q psy11524        140 GGEDCKYKASFVWDTDG---------RQ---LYSSLTHDHPISSLAWAPG-GDMFAVGSYN-TLRLCDKVGWS-HSLDKP  204 (323)
Q Consensus       140 ~~~d~~i~~i~v~d~~~---------~~---~~~~~~~~~~v~~~~~~p~-~~~l~~~~~~-~i~i~d~~~~~-~~~~~~  204 (323)
                      ++.|+.|+   +||++.         +.   ...+.+|...|.+++|+|+ +.+|++++.| +|++||++... .....+
T Consensus       114 gs~d~~v~---iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~  190 (434)
T 2oit_A          114 SEYGSIIA---FFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP  190 (434)
T ss_dssp             TTTEEEEE---EEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC
T ss_pred             cCCCceEE---EEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC
Confidence            88999999   999842         11   3445568899999999997 8899999996 99999988653 334456


Q ss_pred             CCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCC-----CCccceEEEEEccCCCCccceEEEEe-CCCC-
Q psy11524        205 DTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPL-----SHSHEITQLAVNQTGSLQERHVAFID-KNRD-  276 (323)
Q Consensus       205 ~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~p~g~~~d~~l~~~~-~~~~-  276 (323)
                      |...+.+++|+|+|++|++++.|+ |++||.+ ++....+...     .|...+.+++|++++    ..++.+. .+|. 
T Consensus       191 ~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~----~~l~~~~~~dg~~  265 (434)
T 2oit_A          191 STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY----VFAIVYAAADGTL  265 (434)
T ss_dssp             GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT----EEEEEEEETTCCS
T ss_pred             CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc----eEEEEEccCCCcc
Confidence            788999999999999999999999 9999998 5554442111     233489999999986    4554433 2221 


Q ss_pred             -----eEEEeccc
Q psy11524        277 -----LYLSMWSH  284 (323)
Q Consensus       277 -----~~~~~~~~  284 (323)
                           +.+|++..
T Consensus       266 ~~~~~v~i~~l~~  278 (434)
T 2oit_A          266 ETSPDVVMALLPK  278 (434)
T ss_dssp             SSCCEEEEEECCC
T ss_pred             CCCCceEEEEecc
Confidence                 55666653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=1.6e-19  Score=155.44  Aligned_cols=156  Identities=15%  Similarity=0.203  Sum_probs=122.7

Q ss_pred             CCCCCEEEEEEcCCCCeEEE---EeeCCeEEEEeCCCCc-------------eeEeeccCCCeEEEEECCC-CCEEEEEc
Q psy11524         79 NVSPPVYSAAWSPDSNKVLL---TQAKSLVIKPLSPNNK-------------ATKWQAHDGLILKVAWCSS-TDLILSGG  141 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~---~~~~~~~v~~~~~~~~-------------~~~~~~~~~~v~~~~~~~~-~~~l~~~~  141 (323)
                      .+...|.+++|+|+|++|++   ++..++.|++||....             ...+.+|...|.+++|+|+ +.+|++++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            45678999999999999995   3445579999986432             2345678999999999998 78999999


Q ss_pred             CCCceEeeeEEeCCCC-eeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecCC-------CCccEEEE
Q psy11524        142 EDCKYKASFVWDTDGR-QLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDKP-------DTGSVYDL  212 (323)
Q Consensus       142 ~d~~i~~i~v~d~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~-------~~~~v~~~  212 (323)
                      .||+|+   +||++.. .......|...|.+++|+|+|++|++++.| .|++||.++........       |...+.++
T Consensus       170 ~Dg~v~---iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v  246 (434)
T 2oit_A          170 ADGSIA---VLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDV  246 (434)
T ss_dssp             TTSCEE---EEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEE
T ss_pred             CCCeEE---EEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEE
Confidence            999999   9999643 444556678899999999999999999996 99999998544333322       23479999


Q ss_pred             EEcCCCCEEEEEe-cC------c-EEEEEcCCC
Q psy11524        213 VWSNDATQIAGAC-AN------V-IHIFDISSS  237 (323)
Q Consensus       213 ~~~~~~~~l~~~~-~d------~-i~iwd~~~~  237 (323)
                      +|++++.++++.+ .+      . +++|++++.
T Consensus       247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            9999988776543 22      2 889998865

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=2.8e-20  Score=155.26  Aligned_cols=221  Identities=11%  Similarity=0.054  Sum_probs=154.2

Q ss_pred             CCeEEEEeeCCeEEEEeCCC--Cc--eeEeeccCCCeEEEEECCCCCEEEEEcCC-CceEeeeEEeCC--CCee---eEe
Q psy11524         93 SNKVLLTQAKSLVIKPLSPN--NK--ATKWQAHDGLILKVAWCSSTDLILSGGED-CKYKASFVWDTD--GRQL---YSS  162 (323)
Q Consensus        93 ~~~l~~~~~~~~~v~~~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~i~v~d~~--~~~~---~~~  162 (323)
                      ++++++++..++.|++|+..  +.  ......+...+..++|+|+|++|++++.+ +.|.   +|+++  +...   ..+
T Consensus         4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~---~~~~~~~~~~~~~~~~~   80 (343)
T 1ri6_A            4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVL---AYRIAPDDGALTFAAES   80 (343)
T ss_dssp             EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEE---EEEECTTTCCEEEEEEE
T ss_pred             eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEE---EEEecCCCCceeecccc
Confidence            44566664555799999874  22  22334577788999999999988888876 8999   99986  3332   233


Q ss_pred             ecCCCceeEEEEecCCCEEEEEeC-C-eEEEEeCC---CCeeeecCCCCccEEEEEEcCCCCEEEEEe-cCc-EEEEEcC
Q psy11524        163 LTHDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKV---GWSHSLDKPDTGSVYDLVWSNDATQIAGAC-ANV-IHIFDIS  235 (323)
Q Consensus       163 ~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~-i~iwd~~  235 (323)
                      ... ..+..++|+|+|+++++++. + .|.+||+.   .............+.+++|+|+|++|++++ .++ |++||+.
T Consensus        81 ~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  159 (343)
T 1ri6_A           81 ALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVS  159 (343)
T ss_dssp             ECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             ccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence            333 37899999999998888776 5 89999983   222222222344688999999999888887 777 9999998


Q ss_pred             C-Cceeeee--c-CCCCccceEEEEEccCCCCccceEEEEe-CCCCeEEEeccc--c-------c--CC-CC--ccceeE
Q psy11524        236 S-SSSSNVT--A-PLSHSHEITQLAVNQTGSLQERHVAFID-KNRDLYLSMWSH--S-------L--DK-PD--TGSVYD  296 (323)
Q Consensus       236 ~-~~~~~~~--~-~~~~~~~v~~~~~~p~g~~~d~~l~~~~-~~~~~~~~~~~~--~-------~--~~-~~--~~~v~~  296 (323)
                      + ++.....  . .......+..++|+|++    +.+.+.+ .++.+.+|++..  .       .  .. .+  ...+..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg----~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  235 (343)
T 1ri6_A          160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNE----QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD  235 (343)
T ss_dssp             TTSCEEEEEEEEEECSTTCCEEEEEECTTS----SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred             CCCceeeecccccccCCCCCcceEEECCCC----CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccc
Confidence            7 6543210  0 12234578889999998    5565554 566777887743  1       0  11 11  235668


Q ss_pred             EEEeeCCCeeE-eeecCCeEEEEEee
Q psy11524        297 LVWSSDATQIA-GACANGSLLLGTII  321 (323)
Q Consensus       297 ~~~s~~g~~l~-s~~~dg~i~~~~l~  321 (323)
                      ++|+|+|++|+ ++..++.|.+|++.
T Consensus       236 i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          236 IHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             eEECCCCCEEEEEecCCCEEEEEEEc
Confidence            99999999877 55579999999985

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.88  E-value=1e-20  Score=160.94  Aligned_cols=275  Identities=12%  Similarity=0.045  Sum_probs=172.9

Q ss_pred             eEeecccceeEe-----eEeccCCcceeeeee-cc---cc--cc-ccceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCe
Q psy11524         38 LTIRRYDGTVIN-----YPISPYISVLHSYAA-SH---SW--PQ-ALSLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSL  104 (323)
Q Consensus        38 ~~~~~~~~~v~~-----~~~~~~~~~~~~~~~-~~---~~--~~-~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~  104 (323)
                      ..+..|......     ..|+|||+.++.... .+   .|  |. +.+..+... +...+..+.|+|||+.|+++..+ .
T Consensus        24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~-~  102 (388)
T 3pe7_A           24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG-R  102 (388)
T ss_dssp             EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT-T
T ss_pred             EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC-C
Confidence            344555555555     789999987765544 33   22  32 222233332 33444567899999999998766 4


Q ss_pred             EEEEeCCCCc-e-eEeeccCCCeEEEE--ECCCCCEEEEEc----------------------CCCceEeeeEEeCCCCe
Q psy11524        105 VIKPLSPNNK-A-TKWQAHDGLILKVA--WCSSTDLILSGG----------------------EDCKYKASFVWDTDGRQ  158 (323)
Q Consensus       105 ~v~~~~~~~~-~-~~~~~~~~~v~~~~--~~~~~~~l~~~~----------------------~d~~i~~i~v~d~~~~~  158 (323)
                      .+++|+..+. . .....+...+....  ++|++++++...                      .+..|.   +||+.+..
T Consensus       103 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~d~~~g~  179 (388)
T 3pe7_A          103 NLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLM---RVDLKTGE  179 (388)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEE---EEETTTCC
T ss_pred             eEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEE---EEECCCCc
Confidence            8999998766 2 23334444443343  489999887432                      234455   99998667


Q ss_pred             eeEeecCCCceeEEEEec-CCCEEEEEeC------C-eEEEEeCCCCeeeecCCCC--ccEEEEEEcCCCCEEEEEec--
Q psy11524        159 LYSSLTHDHPISSLAWAP-GGDMFAVGSY------N-TLRLCDKVGWSHSLDKPDT--GSVYDLVWSNDATQIAGACA--  226 (323)
Q Consensus       159 ~~~~~~~~~~v~~~~~~p-~~~~l~~~~~------~-~i~i~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~--  226 (323)
                      ...+..+...+..++|+| ||+.|+....      . .|.++|..+.....+..+.  ..+..++|+|||+.|+..+.  
T Consensus       180 ~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~  259 (388)
T 3pe7_A          180 STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLK  259 (388)
T ss_dssp             EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred             eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCC
Confidence            777777777899999999 9999887764      2 7888888766555554444  35788999999998866543  


Q ss_pred             ---Cc-EEEEEcCCCceeeeecCCCCccc---eEEEEEccCCCCccceEEEE---------eCCCCeEEEecccc---cC
Q psy11524        227 ---NV-IHIFDISSSSSSNVTAPLSHSHE---ITQLAVNQTGSLQERHVAFI---------DKNRDLYLSMWSHS---LD  287 (323)
Q Consensus       227 ---d~-i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~~p~g~~~d~~l~~~---------~~~~~~~~~~~~~~---~~  287 (323)
                         +. |++||+.+++......+..+...   ...++|+|+|    +.|++.         ..+..+++|++...   ..
T Consensus       260 ~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l  335 (388)
T 3pe7_A          260 GSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDG----SDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRV  335 (388)
T ss_dssp             TCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEE----CCC------------CCCCEEEEEETTTTEEEEE
T ss_pred             CCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCC----CcceeEeeeccccccCCCCEEEEEeccCCceEEe
Confidence               23 89999998875432112221110   1123688988    333322         22334555555432   01


Q ss_pred             CCCcc-----------ceeEEEEeeCCCeeEeee-cCCeEEEEEe
Q psy11524        288 KPDTG-----------SVYDLVWSSDATQIAGAC-ANGSLLLGTI  320 (323)
Q Consensus       288 ~~~~~-----------~v~~~~~s~~g~~l~s~~-~dg~i~~~~l  320 (323)
                      ..|..           .+.+++|+|||+.|+..+ .+|...+|.+
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          336 ARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             ccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence            11122           478899999999888555 5677777754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.87  E-value=4e-21  Score=176.38  Aligned_cols=261  Identities=12%  Similarity=0.030  Sum_probs=170.6

Q ss_pred             eeEeccCCcceeeeeecc---cccc-ccceeeecCCC----CCEEEEEEcCCCCeEEEEeeC--------CeEEEEeCCC
Q psy11524         49 NYPISPYISVLHSYAASH---SWPQ-ALSLCRTLNVS----PPVYSAAWSPDSNKVLLTQAK--------SLVIKPLSPN  112 (323)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~~~--------~~~v~~~~~~  112 (323)
                      ++.|+|+|+.++.. .++   .|+. +.+....+.+.    ..+.+++|||||++|++++..        ++.|++|+..
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            67899998433211 111   2332 22222333322    248999999999999998762        3689999987


Q ss_pred             Ccee-EeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEee--cCCCce-----------------eEE
Q psy11524        113 NKAT-KWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSL--THDHPI-----------------SSL  172 (323)
Q Consensus       113 ~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~--~~~~~v-----------------~~~  172 (323)
                      +... ........+..++|||||+.|+++. ++.|+   +|++.+.....+.  ++...+                 .++
T Consensus        99 ~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~---~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~  174 (719)
T 1z68_A           99 NGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIY---LKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL  174 (719)
T ss_dssp             TTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEE---EESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred             CCccccceecCcccccceECCCCCEEEEEE-CCeEE---EEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence            6632 0011235688999999999999886 77888   9999654444432  222212                 489


Q ss_pred             EEecCCCEEEEEeCC-----------------------------------eEEEEeCCCCee----ee-----cCCCCcc
Q psy11524        173 AWAPGGDMFAVGSYN-----------------------------------TLRLCDKVGWSH----SL-----DKPDTGS  208 (323)
Q Consensus       173 ~~~p~~~~l~~~~~~-----------------------------------~i~i~d~~~~~~----~~-----~~~~~~~  208 (323)
                      +|||||++|++++.+                                   .|++||+.+...    ..     +..+...
T Consensus       175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  254 (719)
T 1z68_A          175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY  254 (719)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred             EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence            999999999988742                                   688999886532    21     2247778


Q ss_pred             EEEEEEcCCCCEEEEEec--C--c-EEEEE----cCCCceeeeecC----CCCccceE-----EEEEccCCCCccceEEE
Q psy11524        209 VYDLVWSNDATQIAGACA--N--V-IHIFD----ISSSSSSNVTAP----LSHSHEIT-----QLAVNQTGSLQERHVAF  270 (323)
Q Consensus       209 v~~~~~~~~~~~l~~~~~--d--~-i~iwd----~~~~~~~~~~~~----~~~~~~v~-----~~~~~p~g~~~d~~l~~  270 (323)
                      +..++|+||++++++...  +  . |++||    ..+++....  .    ..+...+.     .++|+|+|    +.+.+
T Consensus       255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~spdg----~~l~~  328 (719)
T 1z68_A          255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKT--QEHIEESRTGWAGGFFVSTPVFSYDA----ISYYK  328 (719)
T ss_dssp             EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGG--GEEEEECSSSCSSSSSCCCCEECTTS----SCEEE
T ss_pred             EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEE--EecccccCCceEccccCCccEECCCC----CeEEE
Confidence            999999999887776442  2  3 88899    777776554  3    35556665     78999998    65554


Q ss_pred             --EeCCCC--eEEEecccc---cCCCCccceeEEEEeeCCCeeEeeecC-----CeEEEEEee
Q psy11524        271 --IDKNRD--LYLSMWSHS---LDKPDTGSVYDLVWSSDATQIAGACAN-----GSLLLGTII  321 (323)
Q Consensus       271 --~~~~~~--~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~d-----g~i~~~~l~  321 (323)
                        .+.++.  +.+|++...   ....+...+..+.++ +++.|+..+.+     +..++|.+.
T Consensus       329 ~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~  390 (719)
T 1z68_A          329 IFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS  390 (719)
T ss_dssp             EEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             EEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence              334444  444444332   122234567788877 88877766554     888898864

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.87  E-value=2.8e-21  Score=177.36  Aligned_cols=222  Identities=18%  Similarity=0.177  Sum_probs=154.4

Q ss_pred             EEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeeccC-C---CeEEEEECCCCCEEEEEcC---------CCceEeee
Q psy11524         85 YSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQAHD-G---LILKVAWCSSTDLILSGGE---------DCKYKASF  150 (323)
Q Consensus        85 ~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~-~---~v~~~~~~~~~~~l~~~~~---------d~~i~~i~  150 (323)
                      .+++|+|+|++++ .+.+ +.|++|+..+. ...+..+. .   .+.+++|||||++|++++.         ++.|+   
T Consensus        19 ~~~~~s~dg~~~~-~~~d-~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~---   93 (719)
T 1z68_A           19 FFPNWISGQEYLH-QSAD-NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY---   93 (719)
T ss_dssp             CCCEESSSSEEEE-ECTT-SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE---
T ss_pred             CccEECCCCeEEE-EcCC-CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE---
Confidence            3789999996554 4444 68999998765 33443332 2   3889999999999998876         67788   


Q ss_pred             EEeCCCCee---eEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCeeeec--CCCCccE----------------
Q psy11524        151 VWDTDGRQL---YSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLD--KPDTGSV----------------  209 (323)
Q Consensus       151 v~d~~~~~~---~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~--~~~~~~v----------------  209 (323)
                      +||+++...   ..+   ...+..++|||||+.|+++..+.|++||+.+.....+  .++...+                
T Consensus        94 ~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~  170 (719)
T 1z68_A           94 IYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLAT  170 (719)
T ss_dssp             EEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCS
T ss_pred             EEECCCCccccceec---CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccC
Confidence            999986655   333   3568899999999999999877999999875433322  2222222                


Q ss_pred             -EEEEEcCCCCEEEEEecC----------------------------------c-EEEEEcCCCcee---eee---cCCC
Q psy11524        210 -YDLVWSNDATQIAGACAN----------------------------------V-IHIFDISSSSSS---NVT---APLS  247 (323)
Q Consensus       210 -~~~~~~~~~~~l~~~~~d----------------------------------~-i~iwd~~~~~~~---~~~---~~~~  247 (323)
                       .+++|||||++|++++.|                                  . |++||+.+++..   ...   .+.+
T Consensus       171 ~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~  250 (719)
T 1z68_A          171 KYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS  250 (719)
T ss_dssp             SCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT
T ss_pred             cccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCC
Confidence             489999999999988754                                  2 779999887653   110   0225


Q ss_pred             CccceEEEEEccCCCCccceEEEEeCCC----CeEEEe----cccc----cC----CCCcccee-----EEEEeeCCCee
Q psy11524        248 HSHEITQLAVNQTGSLQERHVAFIDKNR----DLYLSM----WSHS----LD----KPDTGSVY-----DLVWSSDATQI  306 (323)
Q Consensus       248 ~~~~v~~~~~~p~g~~~d~~l~~~~~~~----~~~~~~----~~~~----~~----~~~~~~v~-----~~~~s~~g~~l  306 (323)
                      +...+..++|+||+    ..+..+....    .+.+|+    ..++    +.    ..|...+.     .++|+|||+.|
T Consensus       251 ~~~~~~~~~~SpD~----~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  326 (719)
T 1z68_A          251 SDYYFSWLTWVTDE----RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISY  326 (719)
T ss_dssp             SCEEEEEEEESSSS----EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCE
T ss_pred             CcceEEEeEEeCCC----eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeE
Confidence            77789999999997    6666654332    266677    4433    22    34556666     89999999966


Q ss_pred             Ee--eecCCeEEEE
Q psy11524        307 AG--ACANGSLLLG  318 (323)
Q Consensus       307 ~s--~~~dg~i~~~  318 (323)
                      +.  ...+|...+|
T Consensus       327 ~~~~~~~~g~~~l~  340 (719)
T 1z68_A          327 YKIFSDKDGYKHIH  340 (719)
T ss_dssp             EEEEECTTSCEEEE
T ss_pred             EEEEEccCCceEEE
Confidence            54  4456654444

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.86  E-value=1.4e-19  Score=152.78  Aligned_cols=233  Identities=9%  Similarity=-0.005  Sum_probs=158.8

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCC-C-ceeEeeccC--CCeEEEEECCCCCE--EEEEc------------
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPN-N-KATKWQAHD--GLILKVAWCSSTDL--ILSGG------------  141 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~-~-~~~~~~~~~--~~v~~~~~~~~~~~--l~~~~------------  141 (323)
                      ....+..++|+|+|++|++++.+  .+.+|+.. . ....+..+.  +.+..++|+|||++  +++++            
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~--~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  115 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK--KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT--EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCcEEEECCCCCEEEEEccc--eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence            34568889999999999887665  78899874 3 332222221  33556899999994  55553            


Q ss_pred             -CCCceEeeeEEeCC--CCeeeEee----cCCCceeEEEEecCCCEEEEEeC--CeEEEEeCC-CCeee---ecC--CCC
Q psy11524        142 -EDCKYKASFVWDTD--GRQLYSSL----THDHPISSLAWAPGGDMFAVGSY--NTLRLCDKV-GWSHS---LDK--PDT  206 (323)
Q Consensus       142 -~d~~i~~i~v~d~~--~~~~~~~~----~~~~~v~~~~~~p~~~~l~~~~~--~~i~i~d~~-~~~~~---~~~--~~~  206 (323)
                       .++.+.   +|+++  ++....+.    .+...+.+++|+|||++++++..  +.|++||+. +....   ...  .+.
T Consensus       116 ~~~g~v~---v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g  192 (365)
T 1jof_A          116 KFAGYGN---VFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG  192 (365)
T ss_dssp             SSCCEEE---EEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred             cCCceEE---EEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence             688999   99985  44433333    24567899999999999888775  399999986 43322   121  235


Q ss_pred             ccEEEEEEcCCCCEEEEEec-Cc-EEEEEcC--CCceee---eec-CCC----Ccc------ceEEEE-EccCCCCccce
Q psy11524        207 GSVYDLVWSNDATQIAGACA-NV-IHIFDIS--SSSSSN---VTA-PLS----HSH------EITQLA-VNQTGSLQERH  267 (323)
Q Consensus       207 ~~v~~~~~~~~~~~l~~~~~-d~-i~iwd~~--~~~~~~---~~~-~~~----~~~------~v~~~~-~~p~g~~~d~~  267 (323)
                      ..+..++|+|+|++|++++. ++ |.+|++.  +++...   .+. +..    +..      .+..++ |+|+|    +.
T Consensus       193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG----~~  268 (365)
T 1jof_A          193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG----KY  268 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS----SE
T ss_pred             CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC----CE
Confidence            67999999999999988876 56 9999765  565421   111 221    121      588999 99999    66


Q ss_pred             EEEEeCCC------CeEEEecc-cc-c------CCCCccceeEEEEee---CCCeeEeeecC-CeEEEEEee
Q psy11524        268 VAFIDKNR------DLYLSMWS-HS-L------DKPDTGSVYDLVWSS---DATQIAGACAN-GSLLLGTII  321 (323)
Q Consensus       268 l~~~~~~~------~~~~~~~~-~~-~------~~~~~~~v~~~~~s~---~g~~l~s~~~d-g~i~~~~l~  321 (323)
                      |.+.+...      .+.+|++. .+ .      ...+...+..++|+|   ||++|++++.+ +.|.+|++.
T Consensus       269 l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~  340 (365)
T 1jof_A          269 MFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             EEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             EEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence            66554332      57777764 22 1      111244567899999   89999988764 899999874

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.86  E-value=7.4e-20  Score=166.39  Aligned_cols=269  Identities=10%  Similarity=0.009  Sum_probs=176.6

Q ss_pred             eecccceeEeeEeccCCcceeeeeecc--cccccccee---------eecCCCCCEE---------EEEEc--CCCCe-E
Q psy11524         40 IRRYDGTVINYPISPYISVLHSYAASH--SWPQALSLC---------RTLNVSPPVY---------SAAWS--PDSNK-V   96 (323)
Q Consensus        40 ~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------~~~~~~~~v~---------~~~~s--p~~~~-l   96 (323)
                      +.+|...+..+.+++++.    +....  ..+....++         +...+...+.         ...|+  |||++ |
T Consensus        19 ~~~~~~~~~~~~~s~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l   94 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEV----WWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL   94 (662)
T ss_dssp             HHHTCSCCEEEEEETTEE----EEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred             HhhcCCccceeEEcCCeE----EEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence            346777888888887652    22222  222222222         2223444555         56565  99999 8


Q ss_pred             EEEeeCCeEEEEeCCC----CceeEeec-----cCCCeEEEEECCCCCEEEEEcCC-------CceEeeeEEeCCC----
Q psy11524         97 LLTQAKSLVIKPLSPN----NKATKWQA-----HDGLILKVAWCSSTDLILSGGED-------CKYKASFVWDTDG----  156 (323)
Q Consensus        97 ~~~~~~~~~v~~~~~~----~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d-------~~i~~i~v~d~~~----  156 (323)
                      +++......|++++..    +....+..     |...+..++|+|||+.|++++.+       .....|++||+++    
T Consensus        95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  174 (662)
T 3azo_A           95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA  174 (662)
T ss_dssp             EEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred             EEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence            8877656789999987    55666665     66788999999999999988876       2222344999987    


Q ss_pred             --CeeeEee-cCCCceeEEEEecCCCEEEEEeC--------C-eEEEEeCC-CC---eee-ecCCCCccEEEEEEcCCCC
Q psy11524        157 --RQLYSSL-THDHPISSLAWAPGGDMFAVGSY--------N-TLRLCDKV-GW---SHS-LDKPDTGSVYDLVWSNDAT  219 (323)
Q Consensus       157 --~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~--------~-~i~i~d~~-~~---~~~-~~~~~~~~v~~~~~~~~~~  219 (323)
                        .....+. .+...+..++|||||++|++++.        . .|++||+. +.   ... ....+...+..++|+|||+
T Consensus       175 ~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~  254 (662)
T 3azo_A          175 DRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS  254 (662)
T ss_dssp             CGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC
T ss_pred             cCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe
Confidence              6667776 66677888999999999987763        2 69999987 33   333 3334567899999999999


Q ss_pred             EEEEEecCc---EEEEEcCCCceeeeecCCCCccc--------eEEEEEccCCCCccceEEEEeCCCCeEEEecc--cc-
Q psy11524        220 QIAGACANV---IHIFDISSSSSSNVTAPLSHSHE--------ITQLAVNQTGSLQERHVAFIDKNRDLYLSMWS--HS-  285 (323)
Q Consensus       220 ~l~~~~~d~---i~iwd~~~~~~~~~~~~~~~~~~--------v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~--~~-  285 (323)
                      +++++..++   |++||..+++....  ...+...        +..++|+|++    ..+..... +...+|.+.  .. 
T Consensus       255 l~~~~~~~~~~~l~~~~~~~~~~~~l--~~~~~~~~~p~w~~~~~~~~~~~~~----~~~~~~~~-~~~~l~~~d~~~~~  327 (662)
T 3azo_A          255 LIVATDRTGWWNLHRVDPATGAATQL--CRREEEFAGPLWTPGMRWFAPLANG----LIAVVHGK-GAAVLGILDPESGE  327 (662)
T ss_dssp             EEEEECTTSSCEEEEECTTTCCEEES--SCCSSBSSCCCCSTTCCSEEECTTS----CEEEEEBS-SSCEEEEEETTTTE
T ss_pred             EEEEECCCCCeEEEEEECCCCceeec--ccccccccCccccccCceEeEeCCC----EEEEEEEc-CccEEEEEECCCCc
Confidence            777777776   55556656665443  2222221        4568888887    77777777 888888443  22 


Q ss_pred             --cCCCCccceeEEEEeeCCC--eeEeeecCCeEEEEEe
Q psy11524        286 --LDKPDTGSVYDLVWSSDAT--QIAGACANGSLLLGTI  320 (323)
Q Consensus       286 --~~~~~~~~v~~~~~s~~g~--~l~s~~~dg~i~~~~l  320 (323)
                        ....|...+..+ |+++++  .+++++.+....+|.+
T Consensus       328 ~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~  365 (662)
T 3azo_A          328 LVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVEL  365 (662)
T ss_dssp             EEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEE
T ss_pred             EEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEE
Confidence              233445566666 145554  3445565655555543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.86  E-value=9e-20  Score=152.59  Aligned_cols=221  Identities=9%  Similarity=-0.024  Sum_probs=153.4

Q ss_pred             EEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccC-CCeEEEEECCCCCEEE-EEcCCCceEeeeEEeCCC-Ceee
Q psy11524         86 SAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHD-GLILKVAWCSSTDLIL-SGGEDCKYKASFVWDTDG-RQLY  160 (323)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~d~~i~~i~v~d~~~-~~~~  160 (323)
                      .++++++++.+++++.+ +.|++||..+.  ...+..+. ..+..++|+|+|++++ +...++.|.   +||+.+ +...
T Consensus         4 g~~~~~~~~~~v~~~~~-~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~---~~d~~t~~~~~   79 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYP-NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY---GIDLDTCKNTF   79 (349)
T ss_dssp             CCCCCTTCEEEEEEETT-TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEE---EEETTTTEEEE
T ss_pred             cccccCCCEEEEEeCCC-CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEE---EEeCCCCcEEE
Confidence            45678888888777666 59999998765  33444332 2578899999998654 555788999   999964 4444


Q ss_pred             EeecC------CCceeEEEEecCCCEEEEEe-------------CCeEEEEeCCCCe----eeecCCCCccEEEEEEcCC
Q psy11524        161 SSLTH------DHPISSLAWAPGGDMFAVGS-------------YNTLRLCDKVGWS----HSLDKPDTGSVYDLVWSND  217 (323)
Q Consensus       161 ~~~~~------~~~v~~~~~~p~~~~l~~~~-------------~~~i~i~d~~~~~----~~~~~~~~~~v~~~~~~~~  217 (323)
                      .+...      ...+..++|+|+|+++++++             .+.|.+||+.+..    .... .+...+.+++|+|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~d  158 (349)
T 1jmx_B           80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADD  158 (349)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTT
T ss_pred             EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECCC
Confidence            44422      22378899999999988887             3589999987521    1222 23446889999999


Q ss_pred             CCEEEEEecCc-EEEEEcCCCceeeeecCCC-------------------------------------------------
Q psy11524        218 ATQIAGACANV-IHIFDISSSSSSNVTAPLS-------------------------------------------------  247 (323)
Q Consensus       218 ~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~-------------------------------------------------  247 (323)
                      |+ ++++  ++ |.+||..+++.+..+....                                                 
T Consensus       159 g~-l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  235 (349)
T 1jmx_B          159 GS-LYVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY  235 (349)
T ss_dssp             SC-EEEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred             Cc-EEEc--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeE
Confidence            99 5554  44 9999999988776532211                                                 


Q ss_pred             -----------------CccceEEEEEcc-CCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCe
Q psy11524        248 -----------------HSHEITQLAVNQ-TGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQ  305 (323)
Q Consensus       248 -----------------~~~~v~~~~~~p-~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~  305 (323)
                                       +...+..++|+| ++    +.+.+.  ++.+.+|++...    .... ...+.+++|+|+|++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg----~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~  308 (349)
T 1jmx_B          236 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDP----NQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDK  308 (349)
T ss_dssp             EEEETTTCCEEEEEEEECSSCEEEEEECSSCT----TEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSC
T ss_pred             EEEeccCCcEEecccccCCCcceeeEecCCCC----CEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCE
Confidence                             001234566778 77    555555  566777776553    1111 345789999999999


Q ss_pred             eEeeecCCeEEEEEee
Q psy11524        306 IAGACANGSLLLGTII  321 (323)
Q Consensus       306 l~s~~~dg~i~~~~l~  321 (323)
                      |++++.++.|.+|++.
T Consensus       309 l~~~~~~~~v~v~d~~  324 (349)
T 1jmx_B          309 LYLGGTFNDLAVFNPD  324 (349)
T ss_dssp             EEEESBSSEEEEEETT
T ss_pred             EEEecCCCeEEEEecc
Confidence            9988899999999974

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.85  E-value=7e-20  Score=168.48  Aligned_cols=230  Identities=16%  Similarity=0.123  Sum_probs=158.3

Q ss_pred             CCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCC-----CeEEEEECCCCCEEEEEcCCCce------Ee
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDG-----LILKVAWCSSTDLILSGGEDCKY------KA  148 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i------~~  148 (323)
                      ....+++|+|||++++++  + +.|++|+..+.  ...+..|..     ....++|||||++|+.++.++++      ..
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--E-NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--T-TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             ccccccEECCCCcEEEEc--C-CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence            346689999999888875  4 69999998765  333455543     22458899999999998876443      24


Q ss_pred             eeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCeeeecC--CCCccE-----------------
Q psy11524        149 SFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLDK--PDTGSV-----------------  209 (323)
Q Consensus       149 i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~--~~~~~v-----------------  209 (323)
                      +++||+++..+..+..+...+..++|||||+.||.+.++.|++||+.+.....+.  ++...+                 
T Consensus        94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~  173 (740)
T 4a5s_A           94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (740)
T ss_dssp             EEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence            4599998887777887888899999999999999998779999998754333222  222222                 


Q ss_pred             EEEEEcCCCCEEEEEecC------------------------------------c-EEEEEcCC---C---ceeeeecCC
Q psy11524        210 YDLVWSNDATQIAGACAN------------------------------------V-IHIFDISS---S---SSSNVTAPL  246 (323)
Q Consensus       210 ~~~~~~~~~~~l~~~~~d------------------------------------~-i~iwd~~~---~---~~~~~~~~~  246 (323)
                      ..+.|||||++|+..+.|                                    . |++||+.+   +   +....  ..
T Consensus       174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l--~~  251 (740)
T 4a5s_A          174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI--TA  251 (740)
T ss_dssp             BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE--CC
T ss_pred             cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe--cC
Confidence            358999999999987521                                    2 67788887   6   33322  11


Q ss_pred             -----CCccceEEEEEccCCCCccceEEEEeCCC----CeEEEeccccc--------C----CCCcccee-----EEEEe
Q psy11524        247 -----SHSHEITQLAVNQTGSLQERHVAFIDKNR----DLYLSMWSHSL--------D----KPDTGSVY-----DLVWS  300 (323)
Q Consensus       247 -----~~~~~v~~~~~~p~g~~~d~~l~~~~~~~----~~~~~~~~~~~--------~----~~~~~~v~-----~~~~s  300 (323)
                           ++...+..++|+|||    +.++.+....    .+.+|++.++.        .    ..|...|.     .++|+
T Consensus       252 ~~~~~~~~~~~~~~~wspdg----~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fs  327 (740)
T 4a5s_A          252 PASMLIGDHYLCDVTWATQE----RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFT  327 (740)
T ss_dssp             CHHHHTSCEEEEEEEEEETT----EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEEC
T ss_pred             CccCCCCCeEEEEEEEeCCC----eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEc
Confidence                 267789999999998    5555443222    36667765422        1    22444444     78999


Q ss_pred             eCCCeeE-eee-cCC--eEEEEEe
Q psy11524        301 SDATQIA-GAC-ANG--SLLLGTI  320 (323)
Q Consensus       301 ~~g~~l~-s~~-~dg--~i~~~~l  320 (323)
                      |||+.|+ ..+ .+|  .|++|++
T Consensus       328 pDG~~l~~~~s~~~G~~~l~~~~~  351 (740)
T 4a5s_A          328 LDGNSFYKIISNEEGYRHICYFQI  351 (740)
T ss_dssp             TTSSEEEEEEECTTSCEEEEEEET
T ss_pred             CCCCEEEEEEEcCCCceEEEEEEC
Confidence            9999877 555 444  4555554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.85  E-value=9.3e-18  Score=139.48  Aligned_cols=237  Identities=13%  Similarity=0.063  Sum_probs=164.7

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCC-----------------------eEEEEeCCCCc-eeE-ee-ccCCCeEEEEECCCC
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKS-----------------------LVIKPLSPNNK-ATK-WQ-AHDGLILKVAWCSST  134 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~-----------------------~~v~~~~~~~~-~~~-~~-~~~~~v~~~~~~~~~  134 (323)
                      -..+.+++++|+|+.+++...+.                       +.|.+||.... +.. +. .+-..+..++++|+|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            35677777777777665544331                       36888988643 332 22 334578999999999


Q ss_pred             CEEEEEcCCCceEeeeEEeCCCC--eeeEee---------cCCCceeEEEEec-CCCEEEEEe-CC-eEEEEeCCCCeee
Q psy11524        135 DLILSGGEDCKYKASFVWDTDGR--QLYSSL---------THDHPISSLAWAP-GGDMFAVGS-YN-TLRLCDKVGWSHS  200 (323)
Q Consensus       135 ~~l~~~~~d~~i~~i~v~d~~~~--~~~~~~---------~~~~~v~~~~~~p-~~~~l~~~~-~~-~i~i~d~~~~~~~  200 (323)
                      +++++...++.|+   +|+.+++  .+..+.         .+...+..++++| ++.++++.+ .+ .|++||..+....
T Consensus       103 ~l~v~d~~~~~v~---~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~  179 (329)
T 3fvz_A          103 NYWVTDVALHQVF---KLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVT  179 (329)
T ss_dssp             CEEEEETTTTEEE---EECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEE
T ss_pred             CEEEEECCCCEEE---EEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEE
Confidence            9888888899999   9999876  455552         2334688999999 788877775 44 9999997776555


Q ss_pred             ecCC----------CCccEEEEEEcCC-CCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEcc------CCC
Q psy11524        201 LDKP----------DTGSVYDLVWSND-ATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQ------TGS  262 (323)
Q Consensus       201 ~~~~----------~~~~v~~~~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p------~g~  262 (323)
                      .+..          +-..+..++++|+ +.++++...++ |++||..+++.+..+....+...+..++|+|      ++.
T Consensus       180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~  259 (329)
T 3fvz_A          180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGK  259 (329)
T ss_dssp             EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECC
T ss_pred             EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCC
Confidence            4321          2234889999998 66666666677 9999998898888754455667788999999      332


Q ss_pred             -----CccceEEEEeCCCCeEEEecccccCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        263 -----LQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       263 -----~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                           ..+..+.+|+......+..+..  ...+...+.+++++|+|.++++...+++|++|++..
T Consensus       260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~--~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          260 PYFGDQEPVQGFVMNFSSGEIIDVFKP--VRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CCTTCSCCCCEEEEETTTCCEEEEECC--SSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EEeccCCCcEEEEEEcCCCeEEEEEcC--CCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence                 2223455555333222222211  123456789999999998888999999999999854

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=1e-18  Score=146.30  Aligned_cols=232  Identities=12%  Similarity=0.056  Sum_probs=155.9

Q ss_pred             cccceeEeeEeccCCcceeeeeec---c---cccc---ccceeee-cCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCC
Q psy11524         42 RYDGTVINYPISPYISVLHSYAAS---H---SWPQ---ALSLCRT-LNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSP  111 (323)
Q Consensus        42 ~~~~~v~~~~~~~~~~~~~~~~~~---~---~~~~---~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~  111 (323)
                      .+......++|+|+|+ ++.....   +   .|+.   ..+.... ..+...+..++|+|+|++|++++..++.+.+|+.
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~  115 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI  115 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            3456677899999997 4433321   1   2442   2222333 2367788999999999999988866678999987


Q ss_pred             CC--cee---Eeec---------cCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEe---ec-CCCceeEE
Q psy11524        112 NN--KAT---KWQA---------HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSS---LT-HDHPISSL  172 (323)
Q Consensus       112 ~~--~~~---~~~~---------~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~---~~-~~~~v~~~  172 (323)
                      ..  ...   .+..         +...+.+++|+|||+++++...++.|.   +|+++ ...+...   .. ....+..+
T Consensus       116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~---~~~~~~~g~~~~~~~~~~~~g~~p~~~  192 (347)
T 3hfq_A          116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVY---VYNVSDAGQLSEQSVLTMEAGFGPRHL  192 (347)
T ss_dssp             CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEE---EEEECTTSCEEEEEEEECCTTCCEEEE
T ss_pred             CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEE---EEEECCCCcEEEeeeEEcCCCCCCceE
Confidence            52  222   2211         122488899999999666667788899   99996 3333222   22 23367889


Q ss_pred             EEecCCCEEEEEeC-C-eEEEEeCCC--Ceee---ecCCCC------ccEEEEEEcCCCCEEEEE-ecCc-EEEEEcCC-
Q psy11524        173 AWAPGGDMFAVGSY-N-TLRLCDKVG--WSHS---LDKPDT------GSVYDLVWSNDATQIAGA-CANV-IHIFDISS-  236 (323)
Q Consensus       173 ~~~p~~~~l~~~~~-~-~i~i~d~~~--~~~~---~~~~~~------~~v~~~~~~~~~~~l~~~-~~d~-i~iwd~~~-  236 (323)
                      +|+|||+++++++. + .+.+|++..  ....   ......      ..+..++|+|+|++|+++ ..++ |.+||+.. 
T Consensus       193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~  272 (347)
T 3hfq_A          193 VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD  272 (347)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence            99999998777665 4 999999763  2221   111111      458899999999988554 4567 99999873 


Q ss_pred             C--ceeeeecCCCCccceEEEEEccCCCCccceEEEEeCC-CCeEEEecc
Q psy11524        237 S--SSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKN-RDLYLSMWS  283 (323)
Q Consensus       237 ~--~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~-~~~~~~~~~  283 (323)
                      +  +.+..  +..+...+..++|+|+|    +.|++.+.+ +.+.+|.+.
T Consensus       273 g~~~~~~~--~~~~~~~~~~~~~spdg----~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          273 GHLTLIQQ--ISTEGDFPRDFDLDPTE----AFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             GCEEEEEE--EECSSSCCCEEEECTTS----SEEEEEETTTTEEEEEEEC
T ss_pred             CcEEEeEE--EecCCCCcCeEEECCCC----CEEEEEEcCCCcEEEEEEe
Confidence            2  33333  34445568899999999    788887765 678888654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.83  E-value=4.2e-17  Score=132.72  Aligned_cols=233  Identities=10%  Similarity=0.070  Sum_probs=160.2

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEee------ccCCCeEEEEE-CCCCCEEEEEcC-CCceEeee
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQ------AHDGLILKVAW-CSSTDLILSGGE-DCKYKASF  150 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~------~~~~~v~~~~~-~~~~~~l~~~~~-d~~i~~i~  150 (323)
                      +-..+.+++++|+|+.+++...+ +.|.+|+..+. ...+.      .+...+..+++ .++++++++... ++.|.   
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~-~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~---  103 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNN-HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ---  103 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGG-TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE---
T ss_pred             ccCCCceEEECCCCCEEEEECCC-CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE---
Confidence            45678999999999866654444 58999998765 33332      23357889999 577777666643 78899   


Q ss_pred             EEeCCCCeeeEeec-CCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecC--CCCccEEEEEEcCCCCEEEEEec
Q psy11524        151 VWDTDGRQLYSSLT-HDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDK--PDTGSVYDLVWSNDATQIAGACA  226 (323)
Q Consensus       151 v~d~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~  226 (323)
                      +||.+++.+..+.. ....+.+++++|+|+++++...+ .|++||..+.......  .+...+..++++|+|+++++...
T Consensus       104 ~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          104 IYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             EECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             EECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence            99987777766643 33568999999999877666554 9999998776554432  34456899999999987777777


Q ss_pred             Cc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCC-CeEEEecccc---c--CCCCccceeEEEE
Q psy11524        227 NV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNR-DLYLSMWSHS---L--DKPDTGSVYDLVW  299 (323)
Q Consensus       227 d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~-~~~~~~~~~~---~--~~~~~~~v~~~~~  299 (323)
                      ++ |++||. +++.+..+...++...+..++++|+|.    .+..-..++ .+.+|+....   .  .......+.++++
T Consensus       184 ~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~----l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~  258 (286)
T 1q7f_A          184 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGE----ILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVAL  258 (286)
T ss_dssp             GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCC----EEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEE
T ss_pred             CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCC----EEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEE
Confidence            78 999996 455555521223335788999999973    222222222 4555543321   0  0111234779999


Q ss_pred             eeCCCeeEeeecCCeEEEEEeec
Q psy11524        300 SSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       300 s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      +|+|+++++ +.|++|++|++..
T Consensus       259 ~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          259 MDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             ETTTEEEEE-ETTTEEEEEECSC
T ss_pred             CCCCcEEEE-CCCCeEEEEEccc
Confidence            999987777 6799999999753

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.83  E-value=8.9e-19  Score=159.29  Aligned_cols=245  Identities=10%  Similarity=-0.038  Sum_probs=167.8

Q ss_pred             cccccccceeeecCCCCCEEEEEEcCCCCeEEEEe-eCCeEEEEeC--CCCceeEeeccCCCeE---------EEEEC--
Q psy11524         66 HSWPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQ-AKSLVIKPLS--PNNKATKWQAHDGLIL---------KVAWC--  131 (323)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~~~v~~~~--~~~~~~~~~~~~~~v~---------~~~~~--  131 (323)
                      |+|......-....|...+..++|++++-+++... ..++...+|.  ..+....+..+...+.         ...|+  
T Consensus         8 g~w~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~S   87 (662)
T 3azo_A            8 GAWQSPIDAALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPR   87 (662)
T ss_dssp             TCCCCSCCHHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECC
T ss_pred             cCCCCCCCHHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeee
Confidence            56654443333345889999999997755554431 1223555554  3334666776766655         56665  


Q ss_pred             CCCCE-EEEEcC-CCceEeeeEEeCC--C-CeeeEeec-----CCCceeEEEEecCCCEEEEEeCC-----------eEE
Q psy11524        132 SSTDL-ILSGGE-DCKYKASFVWDTD--G-RQLYSSLT-----HDHPISSLAWAPGGDMFAVGSYN-----------TLR  190 (323)
Q Consensus       132 ~~~~~-l~~~~~-d~~i~~i~v~d~~--~-~~~~~~~~-----~~~~v~~~~~~p~~~~l~~~~~~-----------~i~  190 (323)
                      |||+. |+.++. +..|.   ++++.  + .....+..     +...+.+++|+|||+.|++++.+           .|+
T Consensus        88 PDg~~~la~~~~~~~~l~---~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~  164 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLY---AFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLA  164 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEE---EECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEE
T ss_pred             cCCCeEEEEEECCCCeEE---EEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEE
Confidence            99998 776654 44555   77776  4 66666665     56678899999999999887743           799


Q ss_pred             EEeCCC------CeeeecC-CCCccEEEEEEcCCCCEEEEEecC--------c-EEEEEcC-CC---ceeeeecCCCCcc
Q psy11524        191 LCDKVG------WSHSLDK-PDTGSVYDLVWSNDATQIAGACAN--------V-IHIFDIS-SS---SSSNVTAPLSHSH  250 (323)
Q Consensus       191 i~d~~~------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d--------~-i~iwd~~-~~---~~~~~~~~~~~~~  250 (323)
                      +||+.+      .....+. .+...+..++|||||++|+.++.+        . |++||+. ++   +....  ...+..
T Consensus       165 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l--~~~~~~  242 (662)
T 3azo_A          165 AVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL--LGGPEE  242 (662)
T ss_dssp             EEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE--EEETTB
T ss_pred             EEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe--CCCCCc
Confidence            999887      5555555 566778899999999999877743        5 9999998 56   33332  234567


Q ss_pred             ceEEEEEccCCCCccceEEEEeCCCC--eEEEecccc----cCCCCccc--------eeEEEEeeCCCeeEeeecCCeEE
Q psy11524        251 EITQLAVNQTGSLQERHVAFIDKNRD--LYLSMWSHS----LDKPDTGS--------VYDLVWSSDATQIAGACANGSLL  316 (323)
Q Consensus       251 ~v~~~~~~p~g~~~d~~l~~~~~~~~--~~~~~~~~~----~~~~~~~~--------v~~~~~s~~g~~l~s~~~dg~i~  316 (323)
                      .+..++|+|+|    +.+.+.+.++.  +..++....    +...+...        +..++|+|+++++++++. +.++
T Consensus       243 ~~~~~~~spdg----~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~  317 (662)
T 3azo_A          243 AIAQAEWAPDG----SLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAV  317 (662)
T ss_dssp             CEEEEEECTTS----CEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCE
T ss_pred             eEcceEECCCC----eEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccE
Confidence            89999999998    66666666664  444443232    22222222        567899999999999998 9999


Q ss_pred             EEEe
Q psy11524        317 LGTI  320 (323)
Q Consensus       317 ~~~l  320 (323)
                      +|.+
T Consensus       318 l~~~  321 (662)
T 3azo_A          318 LGIL  321 (662)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9965

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.82  E-value=1.7e-18  Score=159.20  Aligned_cols=263  Identities=13%  Similarity=0.079  Sum_probs=165.4

Q ss_pred             eeEeeEeccCCcceeeeeecc---ccc-cccceeeecC-CC-----CCEEEEEEcCCCCeEEEEeeCC--------eEEE
Q psy11524         46 TVINYPISPYISVLHSYAASH---SWP-QALSLCRTLN-VS-----PPVYSAAWSPDSNKVLLTQAKS--------LVIK  107 (323)
Q Consensus        46 ~v~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~-~~-----~~v~~~~~sp~~~~l~~~~~~~--------~~v~  107 (323)
                      ...++.|+|||+.++..  ++   .|+ .+.+....+. |.     .....++|||||++|++++.+.        +.++
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            45578999999655442  22   244 2222223333 22     1234589999999999887642        5678


Q ss_pred             EeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeec--CCCce---------------
Q psy11524        108 PLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLT--HDHPI---------------  169 (323)
Q Consensus       108 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~--~~~~v---------------  169 (323)
                      +||..++ ...+..+.+.+..++|||||+.||.+. ++.|+   +|++.+.....+..  +...+               
T Consensus        96 ~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~---~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~  171 (740)
T 4a5s_A           96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIY---VKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS  171 (740)
T ss_dssp             EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEE---EESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred             EEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEE---EEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence            9998876 556677888999999999999999885 67888   99997554444432  22112               


Q ss_pred             --eEEEEecCCCEEEEEeCC-------------------------------------eEEEEeCCC---C---eeeecC-
Q psy11524        170 --SSLAWAPGGDMFAVGSYN-------------------------------------TLRLCDKVG---W---SHSLDK-  203 (323)
Q Consensus       170 --~~~~~~p~~~~l~~~~~~-------------------------------------~i~i~d~~~---~---~~~~~~-  203 (323)
                        ..+.|||||+.|++++.|                                     .|++||+.+   .   ....+. 
T Consensus       172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~  251 (740)
T 4a5s_A          172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA  251 (740)
T ss_dssp             SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred             CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence              358999999999987521                                     478889876   4   333332 


Q ss_pred             -----CCCccEEEEEEcCCCCEEEEEec----Cc-EEEEEcCCCc----eeeeecC--CCCccceE-----EEEEccCCC
Q psy11524        204 -----PDTGSVYDLVWSNDATQIAGACA----NV-IHIFDISSSS----SSNVTAP--LSHSHEIT-----QLAVNQTGS  262 (323)
Q Consensus       204 -----~~~~~v~~~~~~~~~~~l~~~~~----d~-i~iwd~~~~~----~~~~~~~--~~~~~~v~-----~~~~~p~g~  262 (323)
                           ++...+..++|+|||+.++....    +. |++||+.+++    +....++  ..+...+.     .++|+||| 
T Consensus       252 ~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG-  330 (740)
T 4a5s_A          252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG-  330 (740)
T ss_dssp             CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS-
T ss_pred             CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC-
Confidence                 26677999999999997665432    33 9999999887    2221101  33444443     78899999 


Q ss_pred             CccceEE-EEe-CCCC--eEEEecccc----cCCCCccceeEEEEeeCCCeeE-eeec----CCeEEEEEe
Q psy11524        263 LQERHVA-FID-KNRD--LYLSMWSHS----LDKPDTGSVYDLVWSSDATQIA-GACA----NGSLLLGTI  320 (323)
Q Consensus       263 ~~d~~l~-~~~-~~~~--~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~-s~~~----dg~i~~~~l  320 (323)
                         +.++ ..+ .+|.  +++|+....    +..+ ...+..+. .+|++.|+ ++..    .+...||.+
T Consensus       331 ---~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g-~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v  396 (740)
T 4a5s_A          331 ---NSFYKIISNEEGYRHICYFQIDKKDCTFITKG-TWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKI  396 (740)
T ss_dssp             ---SEEEEEEECTTSCEEEEEEETTCSSCEESCCS-SSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred             ---CEEEEEEEcCCCceEEEEEECCCCceEecccC-CEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEE
Confidence               6665 333 3443  445555443    2222 34455543 35566555 4433    244555554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.82  E-value=1.3e-18  Score=147.87  Aligned_cols=225  Identities=9%  Similarity=-0.012  Sum_probs=150.0

Q ss_pred             EEEcCCCCeEEEEeeCCe--EEEEeCCCCc-eeEee-ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeee-E
Q psy11524         87 AAWSPDSNKVLLTQAKSL--VIKPLSPNNK-ATKWQ-AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLY-S  161 (323)
Q Consensus        87 ~~~sp~~~~l~~~~~~~~--~v~~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~-~  161 (323)
                      .+|||||++|++++..++  .|++|+..+. ...+. .+...+..+.|+|||+.|+.++.++.+.   +||+.+.... .
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~---~~d~~~g~~~~~  117 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLM---RVDLATLEENVV  117 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEE---EEETTTCCEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEE---EEECCCCcceee
Confidence            889999999999987444  5888988765 33443 3334444678999999999999998888   9999754433 3


Q ss_pred             eecCCCceeEEE--EecCCCEEEEEe----------------------CC-eEEEEeCCCCeeeecCCCCccEEEEEEcC
Q psy11524        162 SLTHDHPISSLA--WAPGGDMFAVGS----------------------YN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSN  216 (323)
Q Consensus       162 ~~~~~~~v~~~~--~~p~~~~l~~~~----------------------~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~  216 (323)
                      ...+...+....  ++|+++.++...                      .+ .|++||+.+.....+..+...+..++|+|
T Consensus       118 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp  197 (388)
T 3pe7_A          118 YQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRP  197 (388)
T ss_dssp             EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEET
T ss_pred             eechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECC
Confidence            343444443333  489999887432                      23 79999988665555555667799999999


Q ss_pred             -CCCEEEEEec------Cc-EEEEEcCCCceeeeecCCCCc--cceEEEEEccCCCCccceEEEE-eCCC--C--eEEEe
Q psy11524        217 -DATQIAGACA------NV-IHIFDISSSSSSNVTAPLSHS--HEITQLAVNQTGSLQERHVAFI-DKNR--D--LYLSM  281 (323)
Q Consensus       217 -~~~~l~~~~~------d~-i~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~p~g~~~d~~l~~~-~~~~--~--~~~~~  281 (323)
                       +|+.|+....      .. |.++|...++...   +..+.  ..+..++|+|+|    +.|+.. ..++  .  +++|+
T Consensus       198 ~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~---l~~~~~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~l~~~d  270 (388)
T 3pe7_A          198 YDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK---VKTHAEGESCTHEFWVPDG----SALVYVSYLKGSPDRFIYSAD  270 (388)
T ss_dssp             TEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE---SCCCCTTEEEEEEEECTTS----SCEEEEEEETTCCCEEEEEEC
T ss_pred             CCCCEEEEEEecCCCCCcceEEEEeCCCCceEE---eeeCCCCcccccceECCCC----CEEEEEecCCCCCcceEEEEe
Confidence             9999887765      34 8888877665443   33333  367889999999    555443 2222  2  66777


Q ss_pred             ccccc----CCCCc-----cceeEEEEeeCCCeeEee---------ecCCeEEEEEee
Q psy11524        282 WSHSL----DKPDT-----GSVYDLVWSSDATQIAGA---------CANGSLLLGTII  321 (323)
Q Consensus       282 ~~~~~----~~~~~-----~~v~~~~~s~~g~~l~s~---------~~dg~i~~~~l~  321 (323)
                      +..+.    .....     .....++|+|||+.|+..         ..+..|++|++.
T Consensus       271 ~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~  328 (388)
T 3pe7_A          271 PETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK  328 (388)
T ss_dssp             TTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETT
T ss_pred             cCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc
Confidence            65531    00000     001223799999988854         456689999864

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.82  E-value=8.5e-17  Score=135.40  Aligned_cols=246  Identities=8%  Similarity=0.003  Sum_probs=160.5

Q ss_pred             ccceeEeeEeccCCcceeeeeec----c---ccc--cc-c--ceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEe
Q psy11524         43 YDGTVINYPISPYISVLHSYAAS----H---SWP--QA-L--SLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPL  109 (323)
Q Consensus        43 ~~~~v~~~~~~~~~~~~~~~~~~----~---~~~--~~-~--~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~  109 (323)
                      +......++|+|+|+.++.....    +   .|+  .. .  +...... +......+++  ++++|++++..++.+.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            56667789999999877654442    1   132  11 1  2222222 4567778888  899998887666799999


Q ss_pred             CCCCc--ee---Eeecc-----------CCCeEEEEECCCCCEEEEEc-CCCceEeeeEEeCCCCe-------e------
Q psy11524        110 SPNNK--AT---KWQAH-----------DGLILKVAWCSSTDLILSGG-EDCKYKASFVWDTDGRQ-------L------  159 (323)
Q Consensus       110 ~~~~~--~~---~~~~~-----------~~~v~~~~~~~~~~~l~~~~-~d~~i~~i~v~d~~~~~-------~------  159 (323)
                      +....  +.   ....+           ...+.+++|+|||+++++++ .++.|.   +|+++...       +      
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~---v~~~~~~~~~~~~~~l~~~~~~  202 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIH---KFNINPNANADNKEKFLTKGTP  202 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEE---EEEECTTCCTTTCCCCEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEE---EEEEcCCCCcccccceeecccc
Confidence            87532  11   11111           23357899999999766554 578899   99885211       1      


Q ss_pred             -eEeecCCCceeEEEEecCCCEEEEEeC-C-eEEEEeCCCCeee------ecCCCCccEEEEEEcCCCCEEEEEecC--c
Q psy11524        160 -YSSLTHDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSHS------LDKPDTGSVYDLVWSNDATQIAGACAN--V  228 (323)
Q Consensus       160 -~~~~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~d--~  228 (323)
                       .........+..++|+|||+++++++. + .|.+||+.+....      ....+...+..++|+|||++|+++..+  +
T Consensus       203 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~  282 (361)
T 3scy_A          203 EAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD  282 (361)
T ss_dssp             EEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred             cceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence             112234456789999999999888885 4 9999998754321      122233457899999999999777765  6


Q ss_pred             -EEEEEcC--CCc--eeeeecCCCCccceEEEEEccCCCCccceEEEEe-CCCCeEEEeccc--c----cC-CCCcccee
Q psy11524        229 -IHIFDIS--SSS--SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFID-KNRDLYLSMWSH--S----LD-KPDTGSVY  295 (323)
Q Consensus       229 -i~iwd~~--~~~--~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~-~~~~~~~~~~~~--~----~~-~~~~~~v~  295 (323)
                       |.+|++.  +++  .+..  +.. ...+..++|+|+|    +.|.+.+ .++.+.+|.+..  +    +. ..+...+.
T Consensus       283 ~i~v~~~~~~~g~~~~~~~--~~~-g~~~~~~~~spdg----~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~  355 (361)
T 3scy_A          283 GVAIFKVDETNGTLTKVGY--QLT-GIHPRNFIITPNG----KYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPV  355 (361)
T ss_dssp             EEEEEEECTTTCCEEEEEE--EEC-SSCCCEEEECTTS----CEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEE
T ss_pred             EEEEEEEcCCCCcEEEeeE--ecC-CCCCceEEECCCC----CEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCe
Confidence             9999985  455  3333  233 4567899999999    7787777 456777865542  2    11 12234567


Q ss_pred             EEEEe
Q psy11524        296 DLVWS  300 (323)
Q Consensus       296 ~~~~s  300 (323)
                      ++.|.
T Consensus       356 ~v~~~  360 (361)
T 3scy_A          356 CLKFV  360 (361)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            77775

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.82  E-value=2e-18  Score=144.43  Aligned_cols=199  Identities=11%  Similarity=0.044  Sum_probs=140.5

Q ss_pred             ccceeeecCCCC--CEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeecc------CCCeEEEEECCCCCEEEEE
Q psy11524         71 ALSLCRTLNVSP--PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAH------DGLILKVAWCSSTDLILSG  140 (323)
Q Consensus        71 ~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~------~~~v~~~~~~~~~~~l~~~  140 (323)
                      +.+..+.+....  .+..++|+|+|++++++...++.|++|+..+.  ...+...      ...+..++|+|||++|+++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  109 (349)
T 1jmx_B           30 SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYAT  109 (349)
T ss_dssp             TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEE
T ss_pred             CCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEE
Confidence            344444554444  68899999999988777666679999998765  2333322      2236789999999999988


Q ss_pred             cCC------------CceEeeeEEeCCC----CeeeEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCe-eeecC
Q psy11524        141 GED------------CKYKASFVWDTDG----RQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWS-HSLDK  203 (323)
Q Consensus       141 ~~d------------~~i~~i~v~d~~~----~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~-~~~~~  203 (323)
                      +.+            +.|.   +||+..    +.+..+. +...+.+++|+|+|+ +++++ +.|++||+.+.. ...+.
T Consensus       110 ~~~~~~~~~~~~~~~~~i~---~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~-~~i~~~d~~~~~~~~~~~  183 (349)
T 1jmx_B          110 VNPTQRLNDHYVVKPPRLE---VFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG-PDIYKMDVKTGKYTVALP  183 (349)
T ss_dssp             EEEEEECSSCEEECCCEEE---EEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES-SSEEEECTTTCCEEEEEC
T ss_pred             cccccccccccccCCCeEE---EEECCCccccceeeecc-CCCcccceeECCCCc-EEEcc-CcEEEEeCCCCceecccc
Confidence            865            8888   999864    2222232 344688999999999 55543 359999986442 22221


Q ss_pred             CCC--------------------------------------------------------------------ccEEEEEEc
Q psy11524        204 PDT--------------------------------------------------------------------GSVYDLVWS  215 (323)
Q Consensus       204 ~~~--------------------------------------------------------------------~~v~~~~~~  215 (323)
                      .+.                                                                    ..+..++|+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  263 (349)
T 1jmx_B          184 LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRS  263 (349)
T ss_dssp             STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC
T ss_pred             ccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEec
Confidence            110                                                                    134567788


Q ss_pred             C-CCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        216 N-DATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       216 ~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      | +|++++++  ++ |.+||+.+++.+..+  . ....+..++|+|++    +.|.+...++.+.+|+...
T Consensus       264 p~dg~~l~~~--~~~v~~~d~~~~~~~~~~--~-~~~~~~~~~~s~dg----~~l~~~~~~~~v~v~d~~~  325 (349)
T 1jmx_B          264 PKDPNQIYGV--LNRLAKYDLKQRKLIKAA--N-LDHTYYCVAFDKKG----DKLYLGGTFNDLAVFNPDT  325 (349)
T ss_dssp             SSCTTEEEEE--ESEEEEEETTTTEEEEEE--E-CSSCCCEEEECSSS----SCEEEESBSSEEEEEETTT
T ss_pred             CCCCCEEEEE--cCeEEEEECccCeEEEEE--c-CCCCccceEECCCC----CEEEEecCCCeEEEEeccc
Confidence            9 99999888  67 999999999887763  2 23457789999998    6777777778888998876

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.82  E-value=4.8e-19  Score=150.82  Aligned_cols=261  Identities=8%  Similarity=-0.028  Sum_probs=164.8

Q ss_pred             eEeeEeccCCcceeeeeec-c---c--cccc-cceeeecCCCCCE-EEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeE
Q psy11524         47 VINYPISPYISVLHSYAAS-H---S--WPQA-LSLCRTLNVSPPV-YSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATK  117 (323)
Q Consensus        47 v~~~~~~~~~~~~~~~~~~-~---~--~~~~-~~~~~~~~~~~~v-~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~  117 (323)
                      +..+.|+|||+.++..... +   .  |+.. .+..+...+.... ..+.|+|||++|++++.+. .|++|+..+. ...
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~-~l~~~d~~~~~~~~  116 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNEL-NLMKVDLETLEEQV  116 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTT-EEEEEETTTCCEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCC-cEEEEECCCCCcEE
Confidence            6778999999876544332 1   1  2322 2222222233333 3378999999999887775 8999998765 333


Q ss_pred             eec-cCCCeEE-------------------EEECCCCCEEEEEc-----CCCceEeeeEEeCCCCeeeEeecCCCceeEE
Q psy11524        118 WQA-HDGLILK-------------------VAWCSSTDLILSGG-----EDCKYKASFVWDTDGRQLYSSLTHDHPISSL  172 (323)
Q Consensus       118 ~~~-~~~~v~~-------------------~~~~~~~~~l~~~~-----~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~  172 (323)
                      +.. +......                   +.|+|+++.++...     .+..|.   +||+.+.....+..+...+..+
T Consensus       117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~---~~d~~~g~~~~~~~~~~~~~~~  193 (396)
T 3c5m_A          117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLI---KVDIETGELEVIHQDTAWLGHP  193 (396)
T ss_dssp             EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEE---EEETTTCCEEEEEEESSCEEEE
T ss_pred             EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEE---EEECCCCcEEeeccCCcccccc
Confidence            322 3332222                   35677777665543     345566   9999766666666667788999


Q ss_pred             EEec-CCCEEEEEeCC-------eEEEEeCCCCeeeecCCC--CccEEEEEEcCCCCEEEEEecC-----c-EEEEEcCC
Q psy11524        173 AWAP-GGDMFAVGSYN-------TLRLCDKVGWSHSLDKPD--TGSVYDLVWSNDATQIAGACAN-----V-IHIFDISS  236 (323)
Q Consensus       173 ~~~p-~~~~l~~~~~~-------~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d-----~-i~iwd~~~  236 (323)
                      .|+| +++.|+..+.+       .|.+||+.+.....+..+  ...+..++|+|+|++|+..+.+     + |++||+.+
T Consensus       194 ~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~  273 (396)
T 3c5m_A          194 IYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET  273 (396)
T ss_dssp             EEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred             eECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence            9999 78877776652       488888876544443333  2358889999999988877654     6 99999988


Q ss_pred             CceeeeecCCCCccceEEEEEcc-CCCCccceEEEEe----------------CCCCeEEEeccccc---CCCCcc----
Q psy11524        237 SSSSNVTAPLSHSHEITQLAVNQ-TGSLQERHVAFID----------------KNRDLYLSMWSHSL---DKPDTG----  292 (323)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~p-~g~~~d~~l~~~~----------------~~~~~~~~~~~~~~---~~~~~~----  292 (323)
                      ++........   . .. +.|+| +|    ..++...                .+..+++|+.....   ...+..    
T Consensus       274 g~~~~l~~~~---~-~~-~~~s~~dg----~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~  344 (396)
T 3c5m_A          274 LENEEVMVMP---P-CS-HLMSNFDG----SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDV  344 (396)
T ss_dssp             CCEEEEEECC---S-EE-EEEECSSS----SEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCC
T ss_pred             CCeEEeeeCC---C-CC-CCccCCCC----ceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccc
Confidence            8755431122   1 22 88999 98    5555432                22456777765431   111122    


Q ss_pred             -------ceeEEEEeeCCCeeEeeec-CCeEEEEEe
Q psy11524        293 -------SVYDLVWSSDATQIAGACA-NGSLLLGTI  320 (323)
Q Consensus       293 -------~v~~~~~s~~g~~l~s~~~-dg~i~~~~l  320 (323)
                             .+..++|+|||+.|+.++. ++...+|.+
T Consensus       345 ~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          345 LDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             BTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             ccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence                   2566899999998886654 566666654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.81  E-value=2.9e-18  Score=142.65  Aligned_cols=212  Identities=12%  Similarity=0.036  Sum_probs=141.5

Q ss_pred             CeEEEEeeCCeEEEEeCCCCc--eeEeeccCC---CeEEEEECCCCCEE-EEEcCCCceEeeeEEeCC-CCeeeEeecC-
Q psy11524         94 NKVLLTQAKSLVIKPLSPNNK--ATKWQAHDG---LILKVAWCSSTDLI-LSGGEDCKYKASFVWDTD-GRQLYSSLTH-  165 (323)
Q Consensus        94 ~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~---~v~~~~~~~~~~~l-~~~~~d~~i~~i~v~d~~-~~~~~~~~~~-  165 (323)
                      +++++++.+ +.|++||....  ...+. ...   .+..++|+|+|+.+ +++..++.|.   +||+. ++.+..+... 
T Consensus         2 ~~~v~~~~~-~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~---~~d~~~~~~~~~~~~~~   76 (337)
T 1pby_B            2 DYILAPARP-DKLVVIDTEKMAVDKVIT-IADAGPTPMVPMVAPGGRIAYATVNKSESLV---KIDLVTGETLGRIDLST   76 (337)
T ss_dssp             EEEEEEETT-TEEEEEETTTTEEEEEEE-CTTCTTCCCCEEECTTSSEEEEEETTTTEEE---EEETTTCCEEEEEECCB
T ss_pred             cEEEEcCCC-CeEEEEECCCCcEEEEEE-cCCCCCCccceEEcCCCCEEEEEeCCCCeEE---EEECCCCCeEeeEEcCC
Confidence            356666555 69999998765  33333 233   57899999999765 4556678999   99996 4555444422 


Q ss_pred             ----CCceeEEEEecCCCEEEEEe------------C-CeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc
Q psy11524        166 ----DHPISSLAWAPGGDMFAVGS------------Y-NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV  228 (323)
Q Consensus       166 ----~~~v~~~~~~p~~~~l~~~~------------~-~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  228 (323)
                          ...+.+++|+|+|++++++.            . +.|.+||+.+............+.+++|+|+|++|+++  ++
T Consensus        77 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~  154 (337)
T 1pby_B           77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GR  154 (337)
T ss_dssp             TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SS
T ss_pred             cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CC
Confidence                12577899999999988885            4 59999999865443222234567889999999988888  57


Q ss_pred             -EEEEEcCCCceeeeecCCCCccceEEEEEccCCC------Cccc-----------------------eEEEEeCCCCeE
Q psy11524        229 -IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGS------LQER-----------------------HVAFIDKNRDLY  278 (323)
Q Consensus       229 -i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~------~~d~-----------------------~l~~~~~~~~~~  278 (323)
                       |++||+.+++....+.......+   +.|+|++.      ..++                       .|.+++..+...
T Consensus       155 ~i~~~d~~~~~~~~~~~~~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  231 (337)
T 1pby_B          155 DLHVMDPEAGTLVEDKPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM  231 (337)
T ss_dssp             SEEEEETTTTEEEEEECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred             eEEEEECCCCcEeeeeeccccCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence             99999999988766322221122   36788874      1111                       133344333211


Q ss_pred             EEecccccCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        279 LSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       279 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      . ..   ....+...+.+++|+|+|++|+++  ++.|++|++.
T Consensus       232 ~-~~---~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~  268 (337)
T 1pby_B          232 A-MR---EVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLE  268 (337)
T ss_dssp             E-EE---EEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETT
T ss_pred             e-Ee---ecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECC
Confidence            1 00   011134567889999999999888  7999999864

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.79  E-value=1.8e-16  Score=129.69  Aligned_cols=225  Identities=8%  Similarity=-0.012  Sum_probs=156.6

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCe
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQ  158 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~  158 (323)
                      .+.....+++|+|+|+.++..+...+.|+.|+..+....+..+...+.+++++|+|+++++...++.|.   +||.....
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~---~~d~~~g~  101 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLE---RQREPGGE  101 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEE---EECSTTCC
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEE---EEcCCCCc
Confidence            356678899999999955555555568999998877666666778899999999999888877778899   99994333


Q ss_pred             eeEeec-C----CCceeEEEEecCCCEEEEE----e--------------CCeEEEEeCCCCeeeecCCCCccEEEEEEc
Q psy11524        159 LYSSLT-H----DHPISSLAWAPGGDMFAVG----S--------------YNTLRLCDKVGWSHSLDKPDTGSVYDLVWS  215 (323)
Q Consensus       159 ~~~~~~-~----~~~v~~~~~~p~~~~l~~~----~--------------~~~i~i~d~~~~~~~~~~~~~~~v~~~~~~  215 (323)
                      ...+.. .    ...+..++++|+|+++++.    +              .+.|..++..+. ......+......++|+
T Consensus       102 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~~~~~~~~gi~~s  180 (296)
T 3e5z_A          102 WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT-LSAPIRDRVKPNGLAFL  180 (296)
T ss_dssp             EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC-EEEEECCCSSEEEEEEC
T ss_pred             EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCC-EEEeecCCCCCccEEEC
Confidence            333321 1    1246789999999988863    2              126667776633 33334456678999999


Q ss_pred             CCCCEEEEEecCc-EEEEEcC-CCce---eeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc---cC
Q psy11524        216 NDATQIAGACANV-IHIFDIS-SSSS---SNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---LD  287 (323)
Q Consensus       216 ~~~~~l~~~~~d~-i~iwd~~-~~~~---~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---~~  287 (323)
                      |+|+.+++.+.++ |++||+. +++.   ...  +..+...+..++++++|    + +.+.. .+.+.+|+....   ..
T Consensus       181 ~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~--~~~~~~~p~~i~~d~~G----~-l~v~~-~~~v~~~~~~g~~~~~~  252 (296)
T 3e5z_A          181 PSGNLLVSDTGDNATHRYCLNARGETEYQGVH--FTVEPGKTDGLRVDAGG----L-IWASA-GDGVHVLTPDGDELGRV  252 (296)
T ss_dssp             TTSCEEEEETTTTEEEEEEECSSSCEEEEEEE--ECCSSSCCCSEEEBTTS----C-EEEEE-TTEEEEECTTSCEEEEE
T ss_pred             CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeE--eeCCCCCCCeEEECCCC----C-EEEEc-CCeEEEECCCCCEEEEE
Confidence            9999886666677 9999987 5554   223  22344556789999997    3 44444 566666665432   12


Q ss_pred             CCCccceeEEEE-eeCCCeeEeeecCCeEE
Q psy11524        288 KPDTGSVYDLVW-SSDATQIAGACANGSLL  316 (323)
Q Consensus       288 ~~~~~~v~~~~~-s~~g~~l~s~~~dg~i~  316 (323)
                      ..+.. +.+++| +|+++.|++++.++..+
T Consensus       253 ~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~  281 (296)
T 3e5z_A          253 LTPQT-TSNLCFGGPEGRTLYMTVSTEFWS  281 (296)
T ss_dssp             ECSSC-CCEEEEESTTSCEEEEEETTEEEE
T ss_pred             ECCCC-ceeEEEECCCCCEEEEEcCCeEEE
Confidence            23344 899999 58999999888775433

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.78  E-value=2.1e-15  Score=125.44  Aligned_cols=256  Identities=7%  Similarity=-0.044  Sum_probs=162.1

Q ss_pred             eeEeeEeccCCcceeeeeecc---ccccccceeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEee-
Q psy11524         46 TVINYPISPYISVLHSYAASH---SWPQALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQ-  119 (323)
Q Consensus        46 ~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~-  119 (323)
                      .|.++.|+|++..+.......   .|  ..+.+..+ .+...+.+++|+|+|+.++++..+ +.|+.|+..+. ...+. 
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~-~~i~~~d~~~~~~~~~~~   83 (333)
T 2dg1_A            7 DLPTLFYSGKSNSAVPIISESELQTI--TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFE-GNIFKINPETKEIKRPFV   83 (333)
T ss_dssp             CCCBCCSCGGGGCSSCCCCGGGSCEE--ECEEEEEEESSCCCEEEEEECTTSCEEEEETTT-CEEEEECTTTCCEEEEEE
T ss_pred             ccceeeecCCccceeEEeecccCccc--ccceeEEEeccCccccCcEECCCCCEEEEECCC-CEEEEEeCCCCcEEEEee
Confidence            466778888775554332111   12  12222333 356778999999999865555444 68999998755 33333 


Q ss_pred             ccCCCeEEEEECCCCCEEEEEcCC----CceEeeeEEeCCCCeeeEe-e--cCCCceeEEEEecCCCEEEEEeC------
Q psy11524        120 AHDGLILKVAWCSSTDLILSGGED----CKYKASFVWDTDGRQLYSS-L--THDHPISSLAWAPGGDMFAVGSY------  186 (323)
Q Consensus       120 ~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~i~v~d~~~~~~~~~-~--~~~~~v~~~~~~p~~~~l~~~~~------  186 (323)
                      .+...+.+++++|+|+++++...+    +.|.   +||.++.....+ .  .....+.+++++|+|+++++...      
T Consensus        84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~---~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~  160 (333)
T 2dg1_A           84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF---AATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP  160 (333)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEE---EECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred             CCCCCcceEEECCCCcEEEEeCCCCCCCceEE---EEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence            566789999999999988877666    6788   999976555432 2  23456899999999988777653      


Q ss_pred             -CeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEe-cCc-EEEEEcCC-Cceeeee------cCCCCccceEEEE
Q psy11524        187 -NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGAC-ANV-IHIFDISS-SSSSNVT------APLSHSHEITQLA  256 (323)
Q Consensus       187 -~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~-i~iwd~~~-~~~~~~~------~~~~~~~~v~~~~  256 (323)
                       +.|..+|..+............+..++|+|+|++|+.+. .++ |.+||..+ ++.+..+      .+.++ ..+..++
T Consensus       161 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~  239 (333)
T 2dg1_A          161 LGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCC  239 (333)
T ss_dssp             CEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEE
T ss_pred             CceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceE
Confidence             267777766543333322334578999999998665554 466 99999864 3332210      01222 4677899


Q ss_pred             EccCCCCccceEEEEeCCCCeEEEecccc---cCCCCcc------ceeEEEEeeCCCeeEeeecC
Q psy11524        257 VNQTGSLQERHVAFIDKNRDLYLSMWSHS---LDKPDTG------SVYDLVWSSDATQIAGACAN  312 (323)
Q Consensus       257 ~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---~~~~~~~------~v~~~~~s~~g~~l~s~~~d  312 (323)
                      ++++|    ........++.+.+|+....   ....+..      .+.+++|+||++.|+.++.+
T Consensus       240 ~d~~G----~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          240 IDSDD----NLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EBTTC----CEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             ECCCC----CEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            99997    32222223455666654321   1111121      68999999998777766655

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.77  E-value=2.7e-18  Score=146.13  Aligned_cols=227  Identities=11%  Similarity=0.048  Sum_probs=150.7

Q ss_pred             CEEEEEEcCCCCeEEEEeeCC--eEEEEeCCCCc-eeEeeccCCCeE-EEEECCCCCEEEEEcCCCceEeeeEEeCCCCe
Q psy11524         83 PVYSAAWSPDSNKVLLTQAKS--LVIKPLSPNNK-ATKWQAHDGLIL-KVAWCSSTDLILSGGEDCKYKASFVWDTDGRQ  158 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~~~--~~v~~~~~~~~-~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~  158 (323)
                      .+.+++|+|||++|+++...+  ..|++|+..+. ...+..+..... .+.|+|||++|+.++.++.+.   +||+.+..
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~---~~d~~~~~  113 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLM---KVDLETLE  113 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEE---EEETTTCC
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEE---EEECCCCC
Confidence            367789999999999886542  37888887765 444444443333 378999999999999888888   99997554


Q ss_pred             eeEeec-CCCceeE-------------------EEEecCCCEEEEEe-----CC-eEEEEeCCCCeeeecCCCCccEEEE
Q psy11524        159 LYSSLT-HDHPISS-------------------LAWAPGGDMFAVGS-----YN-TLRLCDKVGWSHSLDKPDTGSVYDL  212 (323)
Q Consensus       159 ~~~~~~-~~~~v~~-------------------~~~~p~~~~l~~~~-----~~-~i~i~d~~~~~~~~~~~~~~~v~~~  212 (323)
                      ...+.. +......                   +.|+|+++.++...     .+ .|++||+.+........+...+..+
T Consensus       114 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~  193 (396)
T 3c5m_A          114 EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHP  193 (396)
T ss_dssp             EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEE
T ss_pred             cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccc
Confidence            444433 2221112                   34677777766543     34 8999998865544444466778999


Q ss_pred             EEcC-CCCEEEEEecC------c-EEEEEcCCCceeeeecCCCC-ccceEEEEEccCCCCccceEEEEeCC---CC--eE
Q psy11524        213 VWSN-DATQIAGACAN------V-IHIFDISSSSSSNVTAPLSH-SHEITQLAVNQTGSLQERHVAFIDKN---RD--LY  278 (323)
Q Consensus       213 ~~~~-~~~~l~~~~~d------~-i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~p~g~~~d~~l~~~~~~---~~--~~  278 (323)
                      .|+| +++.|+..+.+      . |.+||+..++....  .... ...+..++|+|+|    +.|++...+   ..  +.
T Consensus       194 ~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l--~~~~~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~l~  267 (396)
T 3c5m_A          194 IYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI--KEHAEGESCTHEFWIPDG----SAMAYVSYFKGQTDRVIY  267 (396)
T ss_dssp             EEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEES--SCCCTTEEEEEEEECTTS----SCEEEEEEETTTCCEEEE
T ss_pred             eECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEe--eccCCCccccceEECCCC----CEEEEEecCCCCccceEE
Confidence            9999 88877766542      5 88999876654432  2221 3468889999998    555554322   22  67


Q ss_pred             EEecccc----cCCCCccceeEEEEee-CCCeeEeee----------------cCCeEEEEEee
Q psy11524        279 LSMWSHS----LDKPDTGSVYDLVWSS-DATQIAGAC----------------ANGSLLLGTII  321 (323)
Q Consensus       279 ~~~~~~~----~~~~~~~~v~~~~~s~-~g~~l~s~~----------------~dg~i~~~~l~  321 (323)
                      +|++...    +... . ... +.|+| ||++|+.++                .++.|++|++.
T Consensus       268 ~~d~~~g~~~~l~~~-~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~  328 (396)
T 3c5m_A          268 KANPETLENEEVMVM-P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK  328 (396)
T ss_dssp             EECTTTCCEEEEEEC-C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred             EEECCCCCeEEeeeC-C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence            7776543    1111 1 123 89999 999888754                34778888863

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.77  E-value=2.3e-16  Score=131.95  Aligned_cols=216  Identities=13%  Similarity=0.067  Sum_probs=148.3

Q ss_pred             CCCCEEEEEEcCCCCeEEEEee--------CCeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCC--ceEe
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQA--------KSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDC--KYKA  148 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~--------~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~  148 (323)
                      ....+..+++  ||+++++...        ....|++|+..+. ...+    ..+..++|+|||++|+.++.++  .-..
T Consensus        13 ~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~   86 (347)
T 2gop_A           13 KFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSE   86 (347)
T ss_dssp             CSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred             eeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence            3456777888  8999887642        1357999988765 3334    5678899999999999887543  2223


Q ss_pred             eeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC---------------------------C-eEEEEeCCCCee-
Q psy11524        149 SFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY---------------------------N-TLRLCDKVGWSH-  199 (323)
Q Consensus       149 i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---------------------------~-~i~i~d~~~~~~-  199 (323)
                      |++|++++.....+..... +..++|+|||+.|++++.                           . .|++||+.+... 
T Consensus        87 l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~  165 (347)
T 2gop_A           87 IWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI  165 (347)
T ss_dssp             EEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred             EEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence            4588987666666655555 999999999999888752                           2 799999886654 


Q ss_pred             eecCCCCccEEEEEEcCCCCEEEEEec---------Cc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEE
Q psy11524        200 SLDKPDTGSVYDLVWSNDATQIAGACA---------NV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVA  269 (323)
Q Consensus       200 ~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~  269 (323)
                      ..+.. . .+..++|+|+| +++++..         .. |.++|  +++....   ..+ ..+..+  +|+|    +.|+
T Consensus       166 ~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l---~~~-~~~~~~--spdg----~~l~  230 (347)
T 2gop_A          166 EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKM---FEK-VSFYAV--DSDG----ERIL  230 (347)
T ss_dssp             EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEE---EEE-ESEEEE--EECS----SCEE
T ss_pred             eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEe---ccC-cceeeE--CCCC----CEEE
Confidence            44333 3 78899999999 7776654         23 66666  5554332   223 444444  9998    6666


Q ss_pred             EEeCC--------CCeEEEecccc---cCCCCccceeE-EEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        270 FIDKN--------RDLYLSMWSHS---LDKPDTGSVYD-LVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       270 ~~~~~--------~~~~~~~~~~~---~~~~~~~~v~~-~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +...+        ..+.+++ ...   +...+...+.. +.|+ || ++++++.++.+++| +.
T Consensus       231 ~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          231 LYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             EEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred             EEEccccCCccccceEEEEC-CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence            65433        2355555 221   33445667886 9999 88 88999999999999 64

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.77  E-value=3.1e-16  Score=131.15  Aligned_cols=216  Identities=13%  Similarity=0.065  Sum_probs=148.2

Q ss_pred             CCEEEEEEcCCCCeEEEEeeC----CeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCC-------------
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAK----SLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGED-------------  143 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~----~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------  143 (323)
                      ..+..++|||||++|++++.+    ...|++|+..+. ...+..+.. +..++|+|||+.|+.++.+             
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            567889999999999988753    245888887655 444544445 9999999999998887642             


Q ss_pred             -----C------ceEeeeEEeCCCCee-eEeecCCCceeEEEEecCCCEEEEEeC---------C-eEEEEeCCCCeeee
Q psy11524        144 -----C------KYKASFVWDTDGRQL-YSSLTHDHPISSLAWAPGGDMFAVGSY---------N-TLRLCDKVGWSHSL  201 (323)
Q Consensus       144 -----~------~i~~i~v~d~~~~~~-~~~~~~~~~v~~~~~~p~~~~l~~~~~---------~-~i~i~d~~~~~~~~  201 (323)
                           |      .-..|++||+.+... ..+.. . .+..++|+||| +++++..         . .|.++|  +.....
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~  212 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEK  212 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEE
T ss_pred             ceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEE
Confidence                 1      122345999976655 66655 4 78899999999 7666643         2 466666  333333


Q ss_pred             cCCCCccEEEEEEcCCCCEEEEEecC--------c-EEEEEcCCCceeeeecCCCCccceEE-EEEccCCCCccceEEEE
Q psy11524        202 DKPDTGSVYDLVWSNDATQIAGACAN--------V-IHIFDISSSSSSNVTAPLSHSHEITQ-LAVNQTGSLQERHVAFI  271 (323)
Q Consensus       202 ~~~~~~~v~~~~~~~~~~~l~~~~~d--------~-i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~~p~g~~~d~~l~~~  271 (323)
                      +..+ ..+..+  +|+|++|+.++.+        . |++||  +++....  ...+...+.. +.|+ +     +.+.+.
T Consensus       213 l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l--~~~~~~~~~~~~~~s-d-----g~~~~~  279 (347)
T 2gop_A          213 MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGI--LDEVDRGVGQAKIKD-G-----KVYFTL  279 (347)
T ss_dssp             EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEES--STTCCSEEEEEEEET-T-----EEEEEE
T ss_pred             eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEec--cccCCcccCCccEEc-C-----cEEEEE
Confidence            3333 445444  9999988877632        4 88888  5554443  4556677886 8998 6     466677


Q ss_pred             eCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeE-EEEEe
Q psy11524        272 DKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSL-LLGTI  320 (323)
Q Consensus       272 ~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i-~~~~l  320 (323)
                      ..++...+| +..+    +.. +...|.+++|+|  ..+++++.++.. .+|.+
T Consensus       280 ~~~~~~~l~-~~~g~~~~~~~-~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          280 FEEGSVNLY-IWDGEIKPIAK-GRHWIMGFDVDE--IVVYLKETATRLRELFTW  329 (347)
T ss_dssp             EETTEEEEE-EESSSEEEEEC-SSSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred             ecCCcEEEE-EcCCceEEEec-CCCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence            777888888 7532    222 366789999999  677777777664 67754

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.76  E-value=5.2e-15  Score=120.34  Aligned_cols=234  Identities=9%  Similarity=0.049  Sum_probs=160.9

Q ss_pred             cccceeEeeEeccCCcceeeeeecc---ccccccceeeecC-------CCCCEEEEEE-cCCCCeEEEEeeCCeEEEEeC
Q psy11524         42 RYDGTVINYPISPYISVLHSYAASH---SWPQALSLCRTLN-------VSPPVYSAAW-SPDSNKVLLTQAKSLVIKPLS  110 (323)
Q Consensus        42 ~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------~~~~v~~~~~-sp~~~~l~~~~~~~~~v~~~~  110 (323)
                      ++-....++.++|++..+..-...+   .|+...+....+.       +...+.++++ .++++.+++....++.|++|+
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d  106 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN  106 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence            4455677888999885332211111   2554444444442       2357899999 466665554433246899999


Q ss_pred             CCCce-eEee-ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEee--cCCCceeEEEEecCCCEEEEEeC
Q psy11524        111 PNNKA-TKWQ-AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSL--THDHPISSLAWAPGGDMFAVGSY  186 (323)
Q Consensus       111 ~~~~~-~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~  186 (323)
                      ..+.. ..+. .+...+.+++++|+|+++++...++.|.   +||.+++.+..+.  .+...+..++++|+|+++++...
T Consensus       107 ~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~---~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          107 QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVI---IFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEE---EECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEE---EEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence            66653 3342 2345789999999999888878889999   9998887776664  33456899999999987666655


Q ss_pred             C-eEEEEeCCCCeeeecCCC--CccEEEEEEcCCCCEEEEEecC-c-EEEEEcCCCceeeeecCCCCccceEEEEEccCC
Q psy11524        187 N-TLRLCDKVGWSHSLDKPD--TGSVYDLVWSNDATQIAGACAN-V-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTG  261 (323)
Q Consensus       187 ~-~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g  261 (323)
                      + .|++||..+..+..+...  ...+..++++|+|+++++...+ + |.+||. +++.+..+........+..++++|+|
T Consensus       184 ~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g  262 (286)
T 1q7f_A          184 AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDG  262 (286)
T ss_dssp             GTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTT
T ss_pred             CCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCC
Confidence            4 999999887655544332  3578999999999888887766 5 999995 56666553222223357799999997


Q ss_pred             CCccceEEEEeCCCCeEEEeccc
Q psy11524        262 SLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       262 ~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                          . +.+.+.++.+.+|++..
T Consensus       263 ----~-l~vs~~~~~v~v~~~~~  280 (286)
T 1q7f_A          263 ----S-VVLASKDYRLYIYRYVQ  280 (286)
T ss_dssp             ----E-EEEEETTTEEEEEECSC
T ss_pred             ----c-EEEECCCCeEEEEEccc
Confidence                4 55557788899998754

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.75  E-value=3.2e-15  Score=120.46  Aligned_cols=229  Identities=10%  Similarity=0.011  Sum_probs=157.1

Q ss_pred             CEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEe--eccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeee
Q psy11524         83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKW--QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLY  160 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~  160 (323)
                      ...+++++|+|+.++++....+.|..|+..+.....  ..+...+.+++++++|+++++.. ++.|.   +||.++....
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~---~~d~~~~~~~  100 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVV---TLAAGSNNQT  100 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEE---EECTTCSCCE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEE---EEeCCCceEe
Confidence            789999999998555253444689999876653222  22335678899999999666665 88898   9999876655


Q ss_pred             Eeec-CCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCCeeee-cCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCC
Q psy11524        161 SSLT-HDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGWSHSL-DKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISS  236 (323)
Q Consensus       161 ~~~~-~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~  236 (323)
                      .+.. ....+..++++|+|+++++... +.|.+|+..+..... .......+..++++|+|+++++...++ |.+||...
T Consensus       101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~  180 (270)
T 1rwi_B          101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  180 (270)
T ss_dssp             ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence            4432 2356889999999986666555 489999865443222 222334678999999998666666677 99999877


Q ss_pred             CceeeeecCCCCccceEEEEEccCCCCccceEEEEe-CCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeec
Q psy11524        237 SSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFID-KNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACA  311 (323)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~-~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~  311 (323)
                      +.....  .......+..++++++|     .+.+.+ .++.+..++....    ....+...+.+++++|+|+.+++...
T Consensus       181 ~~~~~~--~~~~~~~p~~i~~d~~g-----~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  253 (270)
T 1rwi_B          181 NNQVVL--PFTDITAPWGIAVDEAG-----TVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG  253 (270)
T ss_dssp             CCEEEC--CCSSCCSEEEEEECTTC-----CEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred             CceEee--cccCCCCceEEEECCCC-----CEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECC
Confidence            665443  23333668899999986     344444 3456666665443    11122356899999999998889899


Q ss_pred             CCeEEEEEeec
Q psy11524        312 NGSLLLGTIIQ  322 (323)
Q Consensus       312 dg~i~~~~l~~  322 (323)
                      +++|+++++.+
T Consensus       254 ~~~v~~~~~~~  264 (270)
T 1rwi_B          254 NDRVVKLTSLE  264 (270)
T ss_dssp             GTEEEEECCCG
T ss_pred             CCEEEEEcCCC
Confidence            99999998754

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.75  E-value=3.4e-16  Score=143.34  Aligned_cols=233  Identities=12%  Similarity=0.036  Sum_probs=155.7

Q ss_pred             CCEEEEEEcCCCCeEEEEeeCCe----EEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCc-----------
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAKSL----VIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCK-----------  145 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~~~----~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-----------  145 (323)
                      ..+..++|||||++||++....|    .|++||+.++ ..........+..++|+|||+.|+.++.++.           
T Consensus       125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~  204 (710)
T 2xdw_A          125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (710)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence            35889999999999998876543    8999998776 2222222223667999999999999887765           


Q ss_pred             --eEeeeEEeCCCCe---eeEeec--CCCceeEEEEecCCCEEEEEeC-----C-eEEEEeCCC------C--eeeecCC
Q psy11524        146 --YKASFVWDTDGRQ---LYSSLT--HDHPISSLAWAPGGDMFAVGSY-----N-TLRLCDKVG------W--SHSLDKP  204 (323)
Q Consensus       146 --i~~i~v~d~~~~~---~~~~~~--~~~~v~~~~~~p~~~~l~~~~~-----~-~i~i~d~~~------~--~~~~~~~  204 (323)
                        -..|++|++.+..   ...+..  +...+..+.|+|||++|+..+.     + .|++||+.+      .  ....+..
T Consensus       205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~  284 (710)
T 2xdw_A          205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID  284 (710)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred             CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC
Confidence              1123399996432   122222  3455789999999999887763     4 799999864      3  3444444


Q ss_pred             CCccEEEEEEcCCCCEEEEEec----Cc-EEEEEcCCCce--eeeecCCCCc--cceEEEEEccCCCCccceEEEEeCCC
Q psy11524        205 DTGSVYDLVWSNDATQIAGACA----NV-IHIFDISSSSS--SNVTAPLSHS--HEITQLAVNQTGSLQERHVAFIDKNR  275 (323)
Q Consensus       205 ~~~~v~~~~~~~~~~~l~~~~~----d~-i~iwd~~~~~~--~~~~~~~~~~--~~v~~~~~~p~g~~~d~~l~~~~~~~  275 (323)
                      +...+.. .|+|+|+.|+..+.    +. |.+||+.+++.  ...  +..+.  ..+..++|++++    ..+.....++
T Consensus       285 ~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~----~lv~~~~~~g  357 (710)
T 2xdw_A          285 NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV--LVPEHEKDVLEWVACVRSN----FLVLCYLHDV  357 (710)
T ss_dssp             SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE--EECCCSSCEEEEEEEETTT----EEEEEEEETT
T ss_pred             CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccee--ccCCCCCCeEEEEEEEcCC----EEEEEEEECC
Confidence            5555544 58899988877654    34 89999987642  233  22332  368889998765    6666676666


Q ss_pred             Ce--EEEecccc----cCCCCccceeEEEEeeCCCeeEee----ecCCeEEEEEee
Q psy11524        276 DL--YLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGA----CANGSLLLGTII  321 (323)
Q Consensus       276 ~~--~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~----~~dg~i~~~~l~  321 (323)
                      ..  .++++..+    ....+.+.+..++++|+++.|+..    ...++|+.|++.
T Consensus       358 ~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~  413 (710)
T 2xdw_A          358 KNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT  413 (710)
T ss_dssp             EEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred             EEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence            54  44454222    233446778899999999866622    345789888864

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.75  E-value=3.6e-16  Score=131.87  Aligned_cols=191  Identities=7%  Similarity=-0.006  Sum_probs=128.4

Q ss_pred             CCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecC--CCceeEEEEecCCCE--EEEEe------------
Q psy11524        123 GLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTH--DHPISSLAWAPGGDM--FAVGS------------  185 (323)
Q Consensus       123 ~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~--~~~v~~~~~~p~~~~--l~~~~------------  185 (323)
                      ..+..++|+|||++|++++.+ .|.   +|+++ ...+..+..+  .+.+.+++|+|+|++  ++++.            
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~---~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  115 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWS---SFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEE---EEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEE---EEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence            467889999999999988887 888   99985 3333322211  133566899999994  44442            


Q ss_pred             -C-CeEEEEeCC--CCeeeecC----CCCccEEEEEEcCCCCEEEEEec-Cc-EEEEEcC-CCceee--eecCCCCccce
Q psy11524        186 -Y-NTLRLCDKV--GWSHSLDK----PDTGSVYDLVWSNDATQIAGACA-NV-IHIFDIS-SSSSSN--VTAPLSHSHEI  252 (323)
Q Consensus       186 -~-~~i~i~d~~--~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~-d~-i~iwd~~-~~~~~~--~~~~~~~~~~v  252 (323)
                       . +.+.+|++.  +.......    .+...+.+++|+|+|++|+++.. ++ |++||+. +++...  .+....+...+
T Consensus       116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p  195 (365)
T 1jof_A          116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence             4 489999986  33222211    24567999999999998887765 45 9999998 676532  21111235678


Q ss_pred             EEEEEccCCCCccceEEEEeC-CCCeEEEeccc--c----------cCC----CCcc------ceeEEE-EeeCCCeeEe
Q psy11524        253 TQLAVNQTGSLQERHVAFIDK-NRDLYLSMWSH--S----------LDK----PDTG------SVYDLV-WSSDATQIAG  308 (323)
Q Consensus       253 ~~~~~~p~g~~~d~~l~~~~~-~~~~~~~~~~~--~----------~~~----~~~~------~v~~~~-~s~~g~~l~s  308 (323)
                      ..++|+|+|    +.+.+.+. ++.+.+|++..  +          ...    .|..      .+..++ |+|||++|++
T Consensus       196 ~~~~~spdg----~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v  271 (365)
T 1jof_A          196 RWVAMHPTG----NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA  271 (365)
T ss_dssp             EEEEECTTS----SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred             CEeEECCCC----CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEE
Confidence            999999999    56666554 45566665431  1          111    1121      588999 9999998887


Q ss_pred             eecCC------eEEEEEee
Q psy11524        309 ACANG------SLLLGTII  321 (323)
Q Consensus       309 ~~~dg------~i~~~~l~  321 (323)
                      +..+.      .|.+|++.
T Consensus       272 ~~~~~~~~~~~~i~v~~~~  290 (365)
T 1jof_A          272 SSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             EEEESSTTSCCEEEEEEEC
T ss_pred             ECCCCCCCCCCeEEEEEEC
Confidence            66433      89999984

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.71  E-value=1.1e-12  Score=106.88  Aligned_cols=268  Identities=9%  Similarity=-0.019  Sum_probs=171.9

Q ss_pred             eecccceeEeeEeccCCcceeeeeecc---ccccccceeeec---CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCC
Q psy11524         40 IRRYDGTVINYPISPYISVLHSYAASH---SWPQALSLCRTL---NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN  113 (323)
Q Consensus        40 ~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~  113 (323)
                      +..+...+.++.+.|+|.....-...+   .++...+ ...+   .....+.+++++++|...++...+ +.|..|+..+
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-~~i~~~~~~g   87 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLDGK-ITEYPLPTPDAKVMCLTISSDGEVWFTENAA-NKIGRITKKG   87 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEECSSTTCCEEEEEECTTSCEEEEETTT-TEEEEECTTS
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCCCC-eEEecCCcccCceeeEEECCCCCEEEeCCCC-CeEEEECCCC
Confidence            344556788899999885332211111   2343322 2222   245789999999999866654334 5788898775


Q ss_pred             ceeEee--ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEe-ecCCCceeEEEEecCCCEEEEEeC-CeE
Q psy11524        114 KATKWQ--AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSS-LTHDHPISSLAWAPGGDMFAVGSY-NTL  189 (323)
Q Consensus       114 ~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~~~~~-~~i  189 (323)
                      ....+.  .....+.++++.|+|+++++...++.|.   +||.+++..... ......+..++++++|+.+++... +.|
T Consensus        88 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~---~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i  164 (299)
T 2z2n_A           88 IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIG---RITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI  164 (299)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE---EECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred             cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEE---EECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence            544333  2455789999999998888877788898   999854433222 223456899999999987776655 499


Q ss_pred             EEEeCCCCeeee-cCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccce
Q psy11524        190 RLCDKVGWSHSL-DKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERH  267 (323)
Q Consensus       190 ~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~  267 (323)
                      ..||..+..... .......+..++++++|+..++...++ |..||. +++.... ........+..++++++|.     
T Consensus       165 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~~~~~g~-----  237 (299)
T 2z2n_A          165 GRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEF-KIPTPNARPHAITAGAGID-----  237 (299)
T ss_dssp             EEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEEECSTTC-----
T ss_pred             EEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEE-ECCCCCCCceeEEECCCCC-----
Confidence            999985443322 233445688999999998766665677 999998 6664332 1333456788999999873     


Q ss_pred             EEEEe-CCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        268 VAFID-KNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       268 l~~~~-~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +.+.+ .++.+..++....    ....+...+.++++ ++|++.++.. .+.+..++..
T Consensus       238 l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~  294 (299)
T 2z2n_A          238 LWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLI  294 (299)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC
T ss_pred             EEEeccCCceEEEECCCCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcC
Confidence            33333 2334444443211    11123467899999 8888766655 4556666653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.71  E-value=1.4e-14  Score=120.28  Aligned_cols=196  Identities=13%  Similarity=0.059  Sum_probs=137.4

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc---eeEe---------eccCCCeEEEEECC-CCCEEEEEc-CCCce
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK---ATKW---------QAHDGLILKVAWCS-STDLILSGG-EDCKY  146 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~---~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-~d~~i  146 (323)
                      -.....++++|+|+.+++. ..++.|+.|+..+.   +..+         ..+-..+..++++| ++.++++.+ .++.|
T Consensus        90 ~~~p~gia~d~~g~l~v~d-~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I  168 (329)
T 3fvz_A           90 FYLPHGLSIDTDGNYWVTD-VALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI  168 (329)
T ss_dssp             CSSEEEEEECTTSCEEEEE-TTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred             cCCceEEEECCCCCEEEEE-CCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence            4578999999999966554 44468999998765   3333         23344689999999 788888876 68999


Q ss_pred             EeeeEEeCCCCeeeEeecCC----------CceeEEEEecC-CCEEEEEeCC-eEEEEeCC-CCeeeec--CCCCccEEE
Q psy11524        147 KASFVWDTDGRQLYSSLTHD----------HPISSLAWAPG-GDMFAVGSYN-TLRLCDKV-GWSHSLD--KPDTGSVYD  211 (323)
Q Consensus       147 ~~i~v~d~~~~~~~~~~~~~----------~~v~~~~~~p~-~~~l~~~~~~-~i~i~d~~-~~~~~~~--~~~~~~v~~  211 (323)
                      +   +|+.+++.+..+....          .....++++|+ +.++++...+ .|++||.. +..+..+  ..+...+..
T Consensus       169 ~---~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~  245 (329)
T 3fvz_A          169 V---QFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFA  245 (329)
T ss_dssp             E---EECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEE
T ss_pred             E---EEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcce
Confidence            9   9998888777664322          23889999998 5544444445 99999987 6555544  335567889


Q ss_pred             EEEcC------CCCEEEEEecCc-EEEEEcCCCceeeeecC-CCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecc
Q psy11524        212 LVWSN------DATQIAGACANV-IHIFDISSSSSSNVTAP-LSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWS  283 (323)
Q Consensus       212 ~~~~~------~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~  283 (323)
                      ++++|      +|+..++...+. |++||..+++.+..+.. ..+...+..++++|+|    ..+..-..++.+.+|++.
T Consensus       246 ~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG----~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          246 ISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG----TVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             EEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS----EEEEEESSSCCEEEEEEE
T ss_pred             eeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC----CEEEEECCCCEEEEEeCC
Confidence            99999      333222233345 99999999998887310 2456678999999996    444444456678888775


Q ss_pred             c
Q psy11524        284 H  284 (323)
Q Consensus       284 ~  284 (323)
                      .
T Consensus       322 ~  322 (329)
T 3fvz_A          322 E  322 (329)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.71  E-value=7.7e-16  Score=140.65  Aligned_cols=231  Identities=9%  Similarity=-0.039  Sum_probs=153.6

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCC----eEEEEeCCCCceeEeeccCCCe--EEEEECCCCCEEEEEcCCCc--------
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKS----LVIKPLSPNNKATKWQAHDGLI--LKVAWCSSTDLILSGGEDCK--------  145 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~----~~v~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d~~--------  145 (323)
                      |...+.+++|||||++||++....    ..|++||+.++......+...+  ..++|+|||+.|+.++.+..        
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~  198 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDER  198 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccC
Confidence            344689999999999999775432    4799999887632201122222  67899999999999888765        


Q ss_pred             -----eEeeeEEeCCCCe-----eeEeecCCCceeEEEEecCCCEEEEEeC-C----eEEEEeCCCCeeeecCCCCccEE
Q psy11524        146 -----YKASFVWDTDGRQ-----LYSSLTHDHPISSLAWAPGGDMFAVGSY-N----TLRLCDKVGWSHSLDKPDTGSVY  210 (323)
Q Consensus       146 -----i~~i~v~d~~~~~-----~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~----~i~i~d~~~~~~~~~~~~~~~v~  210 (323)
                           |+   +|++.+..     +.....+...+.++.|+|||++|++.+. +    .|+++|..+.....+..+...+.
T Consensus       199 ~~~~~v~---~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~  275 (695)
T 2bkl_A          199 PGYTTIR---YHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY  275 (695)
T ss_dssp             GGGCEEE---EEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred             CCCCEEE---EEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence                 66   99996332     2222334457889999999999887664 3    68888765444444444555566


Q ss_pred             EEEEcCCCCEEEEEec----Cc-EEEEEcCCCce--eeeecCCCC-ccceEEEEEccCCCCccceEEEEeCCCCeEEEec
Q psy11524        211 DLVWSNDATQIAGACA----NV-IHIFDISSSSS--SNVTAPLSH-SHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMW  282 (323)
Q Consensus       211 ~~~~~~~~~~l~~~~~----d~-i~iwd~~~~~~--~~~~~~~~~-~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~  282 (323)
                      ...+ ++|. ++..+.    ++ |.+||+.+++.  ...+ +..+ ...+..++|+ ++    ..+.....++...+|.+
T Consensus       276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~l~~~~~~-~~----~lv~~~~~dg~~~l~~~  347 (695)
T 2bkl_A          276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEI-VPEDSSASLLSVSIV-GG----HLSLEYLKDATSEVRVA  347 (695)
T ss_dssp             EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEE-ECCCSSCEEEEEEEE-TT----EEEEEEEETTEEEEEEE
T ss_pred             EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEE-ecCCCCCeEEEEEEE-CC----EEEEEEEECCEEEEEEE
Confidence            6666 5666 554443    46 99999987753  1221 2233 4567888888 44    67777777777777655


Q ss_pred             c--cc---cCCCC-ccceeEEEEeeCCCeeE----eeecCCeEEEEEee
Q psy11524        283 S--HS---LDKPD-TGSVYDLVWSSDATQIA----GACANGSLLLGTII  321 (323)
Q Consensus       283 ~--~~---~~~~~-~~~v~~~~~s~~g~~l~----s~~~dg~i~~~~l~  321 (323)
                      .  ..   ....+ .+.+..++++|+++.|+    +....++|++|++.
T Consensus       348 ~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~  396 (695)
T 2bkl_A          348 TLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVS  396 (695)
T ss_dssp             ETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETT
T ss_pred             eCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence            4  21   12333 56678889999998777    33445789999864

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.69  E-value=1.4e-14  Score=121.85  Aligned_cols=250  Identities=11%  Similarity=0.026  Sum_probs=163.1

Q ss_pred             EeecccceeEeeEeccCCcceeeeee----------c---cccc-cccceeeecC-------CCCCEEEEEEcCCCCeEE
Q psy11524         39 TIRRYDGTVINYPISPYISVLHSYAA----------S---HSWP-QALSLCRTLN-------VSPPVYSAAWSPDSNKVL   97 (323)
Q Consensus        39 ~~~~~~~~v~~~~~~~~~~~~~~~~~----------~---~~~~-~~~~~~~~~~-------~~~~v~~~~~sp~~~~l~   97 (323)
                      .+..+..+  .+.|+|||+.++....          +   ..|| .+.+....+.       +......++++|||++|+
T Consensus        46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~  123 (361)
T 2oiz_A           46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV  123 (361)
T ss_dssp             EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred             EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence            44445555  8999999987765431          1   1344 3344444443       234677899999999999


Q ss_pred             EEeeC-CeEEEEeCCCCc--eeEeeccCCCeEEEEECCCC-CEEEEEcCCCceEeeeEEeCC--CCeeeE------eecC
Q psy11524         98 LTQAK-SLVIKPLSPNNK--ATKWQAHDGLILKVAWCSST-DLILSGGEDCKYKASFVWDTD--GRQLYS------SLTH  165 (323)
Q Consensus        98 ~~~~~-~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~i~v~d~~--~~~~~~------~~~~  165 (323)
                      ++... .+.|.+||....  +..+... .....+.+.|++ ..+++.+.||.+.   +|+.+  ++....      +...
T Consensus       124 v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~~~~v~~~p~~~~~~~~~~~dg~~~---~v~~~~~g~~~~~~~~~~~~~~~  199 (361)
T 2oiz_A          124 LQNASPATSIGIVDVAKGDYVEDVTAA-AGCWSVIPQPNRPRSFMTICGDGGLL---TINLGEDGKVASQSRSKQMFSVK  199 (361)
T ss_dssp             EEEESSSEEEEEEETTTTEEEEEEGGG-TTEEEEEECTTSSSEEEEEETTSSEE---EEEECTTSSEEEEEECCCCSCTT
T ss_pred             EECCCCCCeEEEEECCCCcEEEEEecC-CCcceeEEcCCCCeeEEEECCCCcEE---EEEECCCCcEeeeccccceEcCC
Confidence            98764 579999998776  2220222 223345677875 6778888999998   88874  333311      1112


Q ss_pred             CCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeec-----CC----C----CccEEEEEEcCCCCEEEEEec-----
Q psy11524        166 DHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLD-----KP----D----TGSVYDLVWSNDATQIAGACA-----  226 (323)
Q Consensus       166 ~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~-----~~----~----~~~v~~~~~~~~~~~l~~~~~-----  226 (323)
                      ..+ ..+.++|++..++..+.+ .++++|+........     ..    .    ......++++|+++.++++..     
T Consensus       200 ~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~  278 (361)
T 2oiz_A          200 DDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE  278 (361)
T ss_dssp             TSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT
T ss_pred             CCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc
Confidence            222 234456778777777774 999999864322110     00    0    111223789999888877653     


Q ss_pred             ------Cc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc------cCCCCccc
Q psy11524        227 ------NV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS------LDKPDTGS  293 (323)
Q Consensus       227 ------d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~------~~~~~~~~  293 (323)
                            .+ |.+||+.+++.+.+  +..+.  +..++|+|+|    +.+.+.+. +.+.+|+..+.      ....++..
T Consensus       279 ~~~~~~~~~v~viD~~t~~~v~~--i~~~~--p~~ia~spdg----~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~  349 (361)
T 2oiz_A          279 GTHKFPAAEIWVMDTKTKQRVAR--IPGRD--ALSMTIDQQR----NLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEA  349 (361)
T ss_dssp             TCTTCCCSEEEEEETTTTEEEEE--EECTT--CCEEEEETTT----TEEEEECS-SCEEEEECSSSSCEEEEEETTSCSS
T ss_pred             ccccCCCceEEEEECCCCcEEEE--EecCC--eeEEEECCCC----CEEEEeCC-CeEEEEECCCCcceeeEEeccCCCC
Confidence                  35 99999999999888  44444  8999999999    67777766 78888887653      11223667


Q ss_pred             eeEEEEeeCCC
Q psy11524        294 VYDLVWSSDAT  304 (323)
Q Consensus       294 v~~~~~s~~g~  304 (323)
                      ...++++|+|+
T Consensus       350 P~~~~~~p~G~  360 (361)
T 2oiz_A          350 SLQVQFHPVGG  360 (361)
T ss_dssp             EEEEEECCCSC
T ss_pred             cEEEEecCCCC
Confidence            78899999986

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.68  E-value=3.6e-15  Score=124.01  Aligned_cols=227  Identities=7%  Similarity=0.024  Sum_probs=157.6

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeee
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLY  160 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~  160 (323)
                      ...|.+++|+|++..++....+ ..+..| .......+..+...+.+++|+|+|++++++..++.|.   +||.++....
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~---~~d~~~~~~~   79 (333)
T 2dg1_A            5 QQDLPTLFYSGKSNSAVPIISE-SELQTI-TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIF---KINPETKEIK   79 (333)
T ss_dssp             -CCCCBCCSCGGGGCSSCCCCG-GGSCEE-ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEE---EECTTTCCEE
T ss_pred             ccccceeeecCCccceeEEeec-ccCccc-ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEE---EEeCCCCcEE
Confidence            3456778888888776655444 356666 3333556666777789999999999888888889999   9999765555


Q ss_pred             Eee-cCCCceeEEEEecCCCEEEEEeCC-----eEEEEeCCCCeee-ecC--CCCccEEEEEEcCCCCEEEEEec-----
Q psy11524        161 SSL-THDHPISSLAWAPGGDMFAVGSYN-----TLRLCDKVGWSHS-LDK--PDTGSVYDLVWSNDATQIAGACA-----  226 (323)
Q Consensus       161 ~~~-~~~~~v~~~~~~p~~~~l~~~~~~-----~i~i~d~~~~~~~-~~~--~~~~~v~~~~~~~~~~~l~~~~~-----  226 (323)
                      .+. .+...+.+++++|+|+++++...+     .|.+||..+.... ...  .....+..++++|+|+++++...     
T Consensus        80 ~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~  159 (333)
T 2dg1_A           80 RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTN  159 (333)
T ss_dssp             EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTB
T ss_pred             EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccC
Confidence            443 456789999999999877776544     8999998765433 221  23457899999999987776654     


Q ss_pred             -Cc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEe-CCCCeEEEeccc--cc-----------CCCC
Q psy11524        227 -NV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFID-KNRDLYLSMWSH--SL-----------DKPD  290 (323)
Q Consensus       227 -d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~-~~~~~~~~~~~~--~~-----------~~~~  290 (323)
                       .+ |..+|..+++....   ......+..++|+|++    +.+.+.+ .++.+.+|+...  ..           ... 
T Consensus       160 ~~~~l~~~~~~~~~~~~~---~~~~~~~~~i~~~~dg----~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-  231 (333)
T 2dg1_A          160 PLGGVYYVSPDFRTVTPI---IQNISVANGIALSTDE----KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-  231 (333)
T ss_dssp             CCEEEEEECTTSCCEEEE---EEEESSEEEEEECTTS----SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-
T ss_pred             CCceEEEEeCCCCEEEEe---ecCCCcccceEECCCC----CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-
Confidence             35 77777665554332   2223457889999998    5555544 345566666532  00           011 


Q ss_pred             ccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        291 TGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       291 ~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      ...+..++++++|+++++...++.|.+|+.
T Consensus       232 ~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~  261 (333)
T 2dg1_A          232 HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK  261 (333)
T ss_dssp             SSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             CCCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence            135788999999998888878899999875

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.68  E-value=1.8e-12  Score=105.64  Aligned_cols=229  Identities=10%  Similarity=0.007  Sum_probs=157.9

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEee--ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQ--AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGR  157 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~  157 (323)
                      +...+.+++++++|+..++. ...+.|..|+..+....+.  .....+.++++.++|.++++...++.|.   .|+.+++
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~-~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~---~~~~~g~   88 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQ-HKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIG---RITKKGI   88 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEE-TTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE---EECTTSC
T ss_pred             cCCCccceEECCCCCEEEEe-cCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEE---EECCCCc
Confidence            45789999999999866644 4335889998874444332  3456789999999999888877788898   9998744


Q ss_pred             eeeEee--cCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeee-cCCCCccEEEEEEcCCCCEEEEEecCc-EEEE
Q psy11524        158 QLYSSL--THDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSL-DKPDTGSVYDLVWSNDATQIAGACANV-IHIF  232 (323)
Q Consensus       158 ~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iw  232 (323)
                      . ..+.  .....+.+++++|+|+++++...+ .|..||..+..... .......+..++++++|+..++...++ |..|
T Consensus        89 ~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~  167 (299)
T 2z2n_A           89 I-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRI  167 (299)
T ss_dssp             E-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             E-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEE
Confidence            3 3332  234578899999999877766554 99999985443332 222445689999999998777666667 9999


Q ss_pred             EcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeC-CCCeEEEecccc----cCCCCccceeEEEEeeCCCeeE
Q psy11524        233 DISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDK-NRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIA  307 (323)
Q Consensus       233 d~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~-~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~  307 (323)
                      |. +++.... ........+..+++++++.     +.+.+. .+.+..++....    ....+...+.+++++++|+.++
T Consensus       168 ~~-~g~~~~~-~~~~~~~~~~~i~~~~~g~-----l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v  240 (299)
T 2z2n_A          168 TE-SGDITEF-KIPTPASGPVGITKGNDDA-----LWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWF  240 (299)
T ss_dssp             CT-TCCEEEE-ECSSTTCCEEEEEECTTSS-----EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEE
T ss_pred             cC-CCcEEEe-eCCCCCCcceeEEECCCCC-----EEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEE
Confidence            98 6665432 1233445678999999873     333332 344555544111    1112346789999999998777


Q ss_pred             eeecCCeEEEEEe
Q psy11524        308 GACANGSLLLGTI  320 (323)
Q Consensus       308 s~~~dg~i~~~~l  320 (323)
                      +...++.|..|+.
T Consensus       241 ~~~~~~~i~~~d~  253 (299)
T 2z2n_A          241 TEWGANKIGRLTS  253 (299)
T ss_dssp             EETTTTEEEEEET
T ss_pred             eccCCceEEEECC
Confidence            6667788888874

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.66  E-value=7.9e-14  Score=127.74  Aligned_cols=219  Identities=10%  Similarity=0.019  Sum_probs=144.8

Q ss_pred             CCCCeEEEEeeCC----eEEEEeCCCCc-eeEe-------eccCCCeEEEEECCCCCEEEEEcCCC-----ceEeeeEEe
Q psy11524         91 PDSNKVLLTQAKS----LVIKPLSPNNK-ATKW-------QAHDGLILKVAWCSSTDLILSGGEDC-----KYKASFVWD  153 (323)
Q Consensus        91 p~~~~l~~~~~~~----~~v~~~~~~~~-~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~i~v~d  153 (323)
                      |+|+++++...+.    +.++..+..+. ...+       ..+...+..++|||||++||.+..++     .|+   +||
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~---v~d  157 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIK---FMK  157 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEE---EEE
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEE---EEE
Confidence            8999988776442    25666664333 2222       12334688999999999998776543     677   999


Q ss_pred             CCCCeeeEeecCCCceeEEEEecCCCEEEEEeCC-e----------------EEEEeCCCCe---eeecC--CCCccEEE
Q psy11524        154 TDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-T----------------LRLCDKVGWS---HSLDK--PDTGSVYD  211 (323)
Q Consensus       154 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~----------------i~i~d~~~~~---~~~~~--~~~~~v~~  211 (323)
                      +++............+.+++|+|||+.|+.++.+ .                |++|++.+..   .....  .+...+..
T Consensus       158 ~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~  237 (710)
T 2xdw_A          158 VDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG  237 (710)
T ss_dssp             TTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             CCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence            9766554433333346789999999999988864 4                9999987543   22222  24556889


Q ss_pred             EEEcCCCCEEEEEec-----Cc-EEEEEcCC------Cc-eeeeecCCCCccceEEEEEccCCCCccceEEEEeCCC---
Q psy11524        212 LVWSNDATQIAGACA-----NV-IHIFDISS------SS-SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNR---  275 (323)
Q Consensus       212 ~~~~~~~~~l~~~~~-----d~-i~iwd~~~------~~-~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~---  275 (323)
                      +.|+|||++|+..+.     +. |++||+.+      +. ....  +..+...+.. .|+|+|    +.+.+....+   
T Consensus       238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~--l~~~~~~~~~-~~s~dg----~~l~~~s~~~~~~  310 (710)
T 2xdw_A          238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK--LIDNFEGEYD-YVTNEG----TVFTFKTNRHSPN  310 (710)
T ss_dssp             EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE--EECSSSSCEE-EEEEET----TEEEEEECTTCTT
T ss_pred             EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE--eeCCCCcEEE-EEeccC----CEEEEEECCCCCC
Confidence            999999999988765     56 99999976      43 2333  3444444444 488888    5565554322   


Q ss_pred             -CeEEEecccc-------cCCCCc-cceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        276 -DLYLSMWSHS-------LDKPDT-GSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       276 -~~~~~~~~~~-------~~~~~~-~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                       .+.++++...       +...+. ..+..++|++++.++++...|+..+||.
T Consensus       311 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~  363 (710)
T 2xdw_A          311 YRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL  363 (710)
T ss_dssp             CEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred             CEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEE
Confidence             3666666442       112212 3688899998888888999999765553

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.65  E-value=1.3e-13  Score=111.23  Aligned_cols=207  Identities=10%  Similarity=0.013  Sum_probs=147.0

Q ss_pred             CCeEEEEeeCCeEEEEeCCCCc--eeEeeccC-CCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecC-CCc
Q psy11524         93 SNKVLLTQAKSLVIKPLSPNNK--ATKWQAHD-GLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTH-DHP  168 (323)
Q Consensus        93 ~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~-~~~  168 (323)
                      ++.|++++.+ +.|++||..+.  +.++..+. ..+.++.++|+|+++++  .++.|.   .||.+++.+..+... ...
T Consensus         5 ~~~lv~~~~~-~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~---~~d~~G~~~W~~~~~~~~~   78 (276)
T 3no2_A            5 QHLLVGGSGW-NKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAK---MITRDGRELWNIAAPAGCE   78 (276)
T ss_dssp             CEEEEECTTC-SEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEE---EECTTSCEEEEEECCTTCE
T ss_pred             CcEEEeeCCC-CEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEE---EECCCCCEEEEEcCCCCcc
Confidence            4566665555 69999998444  44555554 46889999999998883  467788   999999888888765 357


Q ss_pred             eeEEEEecCCCEEEEEeC-C-eEEEEeCCCCeeeecC------CCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCce
Q psy11524        169 ISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSHSLDK------PDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSS  239 (323)
Q Consensus       169 v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~  239 (323)
                      +.++.+.|+|+++++.+. + .+..+|..++.+....      .+......+++.++|+++++...++ |..||.. |+.
T Consensus        79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~  157 (276)
T 3no2_A           79 MQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL  157 (276)
T ss_dssp             EEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             ccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence            889999999999998887 5 8888888776443221      1223455678899999999999899 9999987 998


Q ss_pred             eeeecCCCCccceEEEEEccCCC-----CccceEEEEeCCCCeEEEecccc-cCCCCccceeEEEEeeCCCeeEee
Q psy11524        240 SNVTAPLSHSHEITQLAVNQTGS-----LQERHVAFIDKNRDLYLSMWSHS-LDKPDTGSVYDLVWSSDATQIAGA  309 (323)
Q Consensus       240 ~~~~~~~~~~~~v~~~~~~p~g~-----~~d~~l~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~s~  309 (323)
                      +.++  ... ....++...++|.     ..++.|..++.+....+|.+... .....-..+.+++..++|+++++.
T Consensus       158 ~w~~--~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          158 LNSV--KLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             EEEE--ECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             EEEE--ECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence            8873  322 3455677788875     33346667777755567777541 111112347788888999887776

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.64  E-value=2.7e-14  Score=131.43  Aligned_cols=232  Identities=12%  Similarity=0.015  Sum_probs=151.3

Q ss_pred             CCEEEEEEcCCCCeEEEEeeCC----eEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCc-----------
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAKS----LVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCK-----------  145 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~~----~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-----------  145 (323)
                      ..+..++|||||++||++..+.    ..|++||+.++ ......+...+..++|+|| +.|+.++.++.           
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~  241 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY  241 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence            3678999999999999887542    36999998876 2222222222357899999 98888877654           


Q ss_pred             eEeeeEEeCCCCe---eeEeec--CCCceeEEEEecCCCEEEEEeC-----C-eEEEEeCCCC--e-eeecCCCCccEEE
Q psy11524        146 YKASFVWDTDGRQ---LYSSLT--HDHPISSLAWAPGGDMFAVGSY-----N-TLRLCDKVGW--S-HSLDKPDTGSVYD  211 (323)
Q Consensus       146 i~~i~v~d~~~~~---~~~~~~--~~~~v~~~~~~p~~~~l~~~~~-----~-~i~i~d~~~~--~-~~~~~~~~~~v~~  211 (323)
                      -..|++|++.+..   ...+..  +...+.++.|+|||++|+..+.     . .|++||+.+.  . ...+..+......
T Consensus       242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~  321 (741)
T 1yr2_A          242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD  321 (741)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEE
T ss_pred             CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEE
Confidence            2234499985322   222222  2235889999999998877663     2 7999998754  3 4444444444444


Q ss_pred             EEEcCCCCEEEEEec----Cc-EEEEEcCCCc-eeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecc--
Q psy11524        212 LVWSNDATQIAGACA----NV-IHIFDISSSS-SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWS--  283 (323)
Q Consensus       212 ~~~~~~~~~l~~~~~----d~-i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~--  283 (323)
                      . ++|+|+.|+..+.    +. |.+||+.++. ....+ +..+...+..++|+ ++    ..+.....++...+|.+.  
T Consensus       322 ~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l-~~~~~~~l~~~~~~-~~----~lv~~~~~dg~~~l~~~~~~  394 (741)
T 1yr2_A          322 F-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTV-VPESKDNLESVGIA-GN----RLFASYIHDAKSQVLAFDLD  394 (741)
T ss_dssp             E-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEE-ECCCSSEEEEEEEE-BT----EEEEEEEETTEEEEEEEETT
T ss_pred             E-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEE-ecCCCCeEEEEEEE-CC----EEEEEEEECCEEEEEEEeCC
Confidence            4 3488988887765    34 9999988752 22322 34455567777777 33    566777777766666543  


Q ss_pred             cc---cCCC-CccceeEEEEeeCCCeeE----eeecCCeEEEEEee
Q psy11524        284 HS---LDKP-DTGSVYDLVWSSDATQIA----GACANGSLLLGTII  321 (323)
Q Consensus       284 ~~---~~~~-~~~~v~~~~~s~~g~~l~----s~~~dg~i~~~~l~  321 (323)
                      ..   .... +.+.+..++++|+++.|+    +....++|++|++.
T Consensus       395 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~  440 (741)
T 1yr2_A          395 GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPA  440 (741)
T ss_dssp             SCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred             CCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence            21   1222 256788999999998766    33445889999864

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.64  E-value=2.4e-13  Score=112.76  Aligned_cols=224  Identities=10%  Similarity=-0.038  Sum_probs=150.5

Q ss_pred             CCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCee
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQL  159 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~  159 (323)
                      .....+.+.  +..+.++....+.|.++|..+.  +.++. ....+..++++++++.+++...++.|.   +||..+..+
T Consensus        44 ~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~---~iD~~t~~~  117 (328)
T 3dsm_A           44 DVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIF---IINPKTYEI  117 (328)
T ss_dssp             SCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEE---EEETTTTEE
T ss_pred             ccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEE---EEECCCCeE
Confidence            456778774  4555555555579999998754  34453 456788999999885544444789999   999975544


Q ss_pred             e-EeecCC-----CceeEEEEecCCCEEEEEe--CC-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecC---
Q psy11524        160 Y-SSLTHD-----HPISSLAWAPGGDMFAVGS--YN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN---  227 (323)
Q Consensus       160 ~-~~~~~~-----~~v~~~~~~p~~~~l~~~~--~~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---  227 (323)
                      . .+....     .....+++ .++ .++++.  .+ .|.++|+.+...............++++|+|++++++..+   
T Consensus       118 ~~~i~~g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~  195 (328)
T 3dsm_A          118 TGYIECPDMDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEG  195 (328)
T ss_dssp             EEEEECTTCCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTT
T ss_pred             EEEEEcCCccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccC
Confidence            3 444322     14567777 344 444444  24 9999998865433222223456788999999977776655   


Q ss_pred             -------c-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccccc------CCCCccc
Q psy11524        228 -------V-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSL------DKPDTGS  293 (323)
Q Consensus       228 -------~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~~------~~~~~~~  293 (323)
                             + |.++|..+++....+.+. .......++|+|++    +.+.+.+.  .+.+++.....      ...+...
T Consensus       196 ~~~~~~~~~v~~id~~t~~v~~~~~~~-~g~~p~~la~~~d~----~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~  268 (328)
T 3dsm_A          196 SPYGYEAPSLYRIDAETFTVEKQFKFK-LGDWPSEVQLNGTR----DTLYWINN--DIWRMPVEADRVPVRPFLEFRDTK  268 (328)
T ss_dssp             CSSCBCCCEEEEEETTTTEEEEEEECC-TTCCCEEEEECTTS----CEEEEESS--SEEEEETTCSSCCSSCSBCCCSSC
T ss_pred             CccccCCceEEEEECCCCeEEEEEecC-CCCCceeEEEecCC----CEEEEEcc--EEEEEECCCCceeeeeeecCCCCc
Confidence                   7 999999998877663222 23468899999998    77777655  77777776541      1111356


Q ss_pred             eeEEEEeeC-CCeeEee----ecCCeEEEEEe
Q psy11524        294 VYDLVWSSD-ATQIAGA----CANGSLLLGTI  320 (323)
Q Consensus       294 v~~~~~s~~-g~~l~s~----~~dg~i~~~~l  320 (323)
                      ...++++|+ ++.+++.    ..++.|.+|+.
T Consensus       269 p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~  300 (328)
T 3dsm_A          269 YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP  300 (328)
T ss_dssp             EEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred             eEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence            889999995 5555555    57889999875

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.62  E-value=6.3e-13  Score=108.55  Aligned_cols=227  Identities=10%  Similarity=0.014  Sum_probs=146.4

Q ss_pred             ecccceeEeeEeccCCcce-eeeeecc---ccccccceeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCC-c
Q psy11524         41 RRYDGTVINYPISPYISVL-HSYAASH---SWPQALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN-K  114 (323)
Q Consensus        41 ~~~~~~v~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~-~  114 (323)
                      ..+.....++.|+|++..+ ......+   .|+.... .+.+ .+...+.+++++|+|+.+++...+ +.|..|+... .
T Consensus        24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~-~~i~~~d~~~g~  101 (296)
T 3e5z_A           24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGL-RRLERQREPGGE  101 (296)
T ss_dssp             ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTT-TEEEEECSTTCC
T ss_pred             ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCC-CeEEEEcCCCCc
Confidence            3445556789999998632 2221111   2443333 3333 356789999999999976654333 5899999844 3


Q ss_pred             eeEeecc-----CCCeEEEEECCCCCEEEEE----cC-------------CCceEeeeEEeCCCCeeeEeecCCCceeEE
Q psy11524        115 ATKWQAH-----DGLILKVAWCSSTDLILSG----GE-------------DCKYKASFVWDTDGRQLYSSLTHDHPISSL  172 (323)
Q Consensus       115 ~~~~~~~-----~~~v~~~~~~~~~~~l~~~----~~-------------d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~  172 (323)
                      ...+...     ...+..++++|+|+++++.    ..             .+.|.   .++.. .....+.........+
T Consensus       102 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~---~~~~~-g~~~~~~~~~~~~~gi  177 (296)
T 3e5z_A          102 WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVF---RLAPD-GTLSAPIRDRVKPNGL  177 (296)
T ss_dssp             EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEE---EECTT-SCEEEEECCCSSEEEE
T ss_pred             EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEE---EECCC-CCEEEeecCCCCCccE
Confidence            3333211     2345689999999988873    21             23444   66666 4445555566678899


Q ss_pred             EEecCCCEEEEEeCC-eEEEEeCC-CCee----eecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecC
Q psy11524        173 AWAPGGDMFAVGSYN-TLRLCDKV-GWSH----SLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAP  245 (323)
Q Consensus       173 ~~~p~~~~l~~~~~~-~i~i~d~~-~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~  245 (323)
                      +|+|+|+.+++.+.+ .|++||+. ....    ..+..+...+..++++++|+++++.  ++ |.+||.. ++.+..  +
T Consensus       178 ~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~--~  252 (296)
T 3e5z_A          178 AFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGR--V  252 (296)
T ss_dssp             EECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEE--E
T ss_pred             EECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEE--E
Confidence            999999998554444 99999985 2222    2223345567889999999866655  66 9999976 666666  3


Q ss_pred             CCCccceEEEEE-ccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        246 LSHSHEITQLAV-NQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       246 ~~~~~~v~~~~~-~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      ..+.. +.+++| +|++    +.|.+.+.+ .+..++...
T Consensus       253 ~~~~~-~~~~~f~~~d~----~~L~v~t~~-~l~~~~~~~  286 (296)
T 3e5z_A          253 LTPQT-TSNLCFGGPEG----RTLYMTVST-EFWSIETNV  286 (296)
T ss_dssp             ECSSC-CCEEEEESTTS----CEEEEEETT-EEEEEECSC
T ss_pred             ECCCC-ceeEEEECCCC----CEEEEEcCC-eEEEEEccc
Confidence            44445 889999 5787    778887764 344444443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.62  E-value=1.1e-13  Score=116.33  Aligned_cols=224  Identities=8%  Similarity=-0.040  Sum_probs=141.4

Q ss_pred             EEEEcCCCCeEEEEee---------CCeEEEEeCCCCc--eeEeecc------CCCeEEEEECCCCCEEEEEcC--CCce
Q psy11524         86 SAAWSPDSNKVLLTQA---------KSLVIKPLSPNNK--ATKWQAH------DGLILKVAWCSSTDLILSGGE--DCKY  146 (323)
Q Consensus        86 ~~~~sp~~~~l~~~~~---------~~~~v~~~~~~~~--~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--d~~i  146 (323)
                      .++|+|||++++++..         .++.|.+||....  ...+...      ......++++|||++|++++.  +++|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            8999999999998863         2357999998654  3334322      234668999999999998874  5789


Q ss_pred             EeeeEEeCCCCeeeEe-ecCCCceeEEEEecCC-CEEEEEeCC-eEEEEeCCC--Cee------eecCCCCccEEEEEEc
Q psy11524        147 KASFVWDTDGRQLYSS-LTHDHPISSLAWAPGG-DMFAVGSYN-TLRLCDKVG--WSH------SLDKPDTGSVYDLVWS  215 (323)
Q Consensus       147 ~~i~v~d~~~~~~~~~-~~~~~~v~~~~~~p~~-~~l~~~~~~-~i~i~d~~~--~~~------~~~~~~~~~v~~~~~~  215 (323)
                      .   +||++...+... .... ....+.+.|++ ..+++.+.+ .+.+|+...  ...      ..+.....+ ..+.++
T Consensus       134 ~---v~d~~~~~~~~~~i~~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~  208 (361)
T 2oiz_A          134 G---IVDVAKGDYVEDVTAAA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPA  208 (361)
T ss_dssp             E---EEETTTTEEEEEEGGGT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCE
T ss_pred             E---EEECCCCcEEEEEecCC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEec
Confidence            9   999975443332 2222 22335677765 456666664 888888643  222      111112222 233446


Q ss_pred             CCCCEEEEEecCc-EEEEEcCCCcee--eeecCCC--------CccceEEEEEccCCCCccceEEEEeC-----------
Q psy11524        216 NDATQIAGACANV-IHIFDISSSSSS--NVTAPLS--------HSHEITQLAVNQTGSLQERHVAFIDK-----------  273 (323)
Q Consensus       216 ~~~~~l~~~~~d~-i~iwd~~~~~~~--~~~~~~~--------~~~~v~~~~~~p~g~~~d~~l~~~~~-----------  273 (323)
                      |++..++..+.++ +.++|+..+...  .......        .......++|+|++    +.+.+...           
T Consensus       209 ~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg----~~lyv~~~~~~~~~~~~~~  284 (361)
T 2oiz_A          209 LDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRAS----GRMYVFMHPDGKEGTHKFP  284 (361)
T ss_dssp             ECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTT----TEEEEEEESSCCTTCTTCC
T ss_pred             ccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCC----CeEEEEEccCCCcccccCC
Confidence            7787788888888 999998755422  1110111        00112236889987    56655432           


Q ss_pred             CCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        274 NRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       274 ~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      ...+.+|+..+.    ....+.  +.+++|+|||++|++++. +.|.+|+..
T Consensus       285 ~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~  333 (361)
T 2oiz_A          285 AAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDIS  333 (361)
T ss_dssp             CSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECS
T ss_pred             CceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECC
Confidence            234666666554    222323  899999999999998887 999999864

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.62  E-value=1.2e-12  Score=107.64  Aligned_cols=228  Identities=8%  Similarity=-0.029  Sum_probs=147.8

Q ss_pred             CCCEEEEEEcCCCCeEEE-------EeeCCeEEEEeCCCCc-eeEeec-----cCCCeEEEEECCC-CCEEEEEcCCCce
Q psy11524         81 SPPVYSAAWSPDSNKVLL-------TQAKSLVIKPLSPNNK-ATKWQA-----HDGLILKVAWCSS-TDLILSGGEDCKY  146 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~-------~~~~~~~v~~~~~~~~-~~~~~~-----~~~~v~~~~~~~~-~~~l~~~~~d~~i  146 (323)
                      -....+++|+++|..+++       ...+ +.|+.|+..+. ...+..     +...+.+++++++ |+++++.. .+.|
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l   94 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPA-GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL   94 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEEC-CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCC-CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCE
Confidence            445689999999976665       3344 58999986443 444433     4567899999999 76555544 4467


Q ss_pred             EeeeEEeCCCCeeeEe-ec-----CCCceeEEEEecCCCEEEEEeC----------------CeEEEEeCCCCeeeecCC
Q psy11524        147 KASFVWDTDGRQLYSS-LT-----HDHPISSLAWAPGGDMFAVGSY----------------NTLRLCDKVGWSHSLDKP  204 (323)
Q Consensus       147 ~~i~v~d~~~~~~~~~-~~-----~~~~v~~~~~~p~~~~l~~~~~----------------~~i~i~d~~~~~~~~~~~  204 (323)
                      .   +||.+ .....+ ..     ....+.+++++|+|+++++...                +.|..+|..+.. .....
T Consensus        95 ~---~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~-~~~~~  169 (314)
T 1pjx_A           95 L---VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQM-IQVDT  169 (314)
T ss_dssp             E---EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCE-EEEEE
T ss_pred             E---EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCE-EEecc
Confidence            7   99988 444433 21     1235789999999987766543                257777766432 22222


Q ss_pred             CCccEEEEEEc----CCCCEEEEEe-cCc-EEEEEcC-CCce-----eeeecCCCCc-cceEEEEEccCCCCccceEEEE
Q psy11524        205 DTGSVYDLVWS----NDATQIAGAC-ANV-IHIFDIS-SSSS-----SNVTAPLSHS-HEITQLAVNQTGSLQERHVAFI  271 (323)
Q Consensus       205 ~~~~v~~~~~~----~~~~~l~~~~-~d~-i~iwd~~-~~~~-----~~~~~~~~~~-~~v~~~~~~p~g~~~d~~l~~~  271 (323)
                      +......++|+    |+|+.|+.+. .++ |.+||.. +++.     ...  +..+. ..+..++++++|    ......
T Consensus       170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~--~~~~~~~~p~~i~~d~~G----~l~v~~  243 (314)
T 1pjx_A          170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH--IPGTHEGGADGMDFDEDN----NLLVAN  243 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE--CCCCSSCEEEEEEEBTTC----CEEEEE
T ss_pred             CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEE--CCCCCCCCCCceEECCCC----CEEEEE
Confidence            33457889999    9997666554 566 9999976 4432     222  33333 567889999987    333332


Q ss_pred             eCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeE-eeecCCeEEEEEee
Q psy11524        272 DKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIA-GACANGSLLLGTII  321 (323)
Q Consensus       272 ~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~-s~~~dg~i~~~~l~  321 (323)
                      ..++.+..|+..+.    ....+...+.+++|+|+|+.|+ +...++.|..+++.
T Consensus       244 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          244 WGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             ETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             cCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            34566777776522    1223346789999999999554 55566888888763

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.61  E-value=1.1e-12  Score=107.65  Aligned_cols=225  Identities=10%  Similarity=0.012  Sum_probs=149.1

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCe
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQ  158 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~  158 (323)
                      ........+.|+|+|+.|+..+..++.|+.|+..+....+..+...+..++++++|+++++...++.|.   +|+.+++.
T Consensus        42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~---~~~~~g~~  118 (305)
T 3dr2_A           42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAIT---RSDADGQA  118 (305)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEE---EECTTSCE
T ss_pred             cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEE---EECCCCCE
Confidence            456677899999999977777666678999988666666666777899999999999777666667888   99987543


Q ss_pred             eeEeecC-----CCceeEEEEecCCCEEEE----Ee--------------CCeEEEEeCCCCeeeecCCCCccEEEEEEc
Q psy11524        159 LYSSLTH-----DHPISSLAWAPGGDMFAV----GS--------------YNTLRLCDKVGWSHSLDKPDTGSVYDLVWS  215 (323)
Q Consensus       159 ~~~~~~~-----~~~v~~~~~~p~~~~l~~----~~--------------~~~i~i~d~~~~~~~~~~~~~~~v~~~~~~  215 (323)
                       ..+...     ...+..++++|+|+++++    +.              .+.|+.+|..+....... .......++|+
T Consensus       119 -~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~s  196 (305)
T 3dr2_A          119 -HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFS  196 (305)
T ss_dssp             -EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEEC
T ss_pred             -EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEc
Confidence             333211     124678999999998876    32              126888887543333222 34567889999


Q ss_pred             CCCCEEEEEecC------c-EEEEEcCCCceee--eecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-
Q psy11524        216 NDATQIAGACAN------V-IHIFDISSSSSSN--VTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-  285 (323)
Q Consensus       216 ~~~~~l~~~~~d------~-i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-  285 (323)
                      |+++.|+.+...      + |++||+..+....  .+ ..........++++++|+     |.+... +.+.+|+.... 
T Consensus       197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~-~~~~~~~pdgi~~d~~G~-----lwv~~~-~gv~~~~~~g~~  269 (305)
T 3dr2_A          197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHF-ASVPDGLPDGFCVDRGGW-----LWSSSG-TGVCVFDSDGQL  269 (305)
T ss_dssp             TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEE-ECCSSSCCCSEEECTTSC-----EEECCS-SEEEEECTTSCE
T ss_pred             CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEE-EECCCCCCCeEEECCCCC-----EEEecC-CcEEEECCCCCE
Confidence            999988777654      6 9999987654111  10 111233455688888873     333332 23444444321 


Q ss_pred             --cCCCCccceeEEEEeeCCCeeEeeecCCeEE
Q psy11524        286 --LDKPDTGSVYDLVWSSDATQIAGACANGSLL  316 (323)
Q Consensus       286 --~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~  316 (323)
                        .... ...+.+++|+|+++.|..++.++..+
T Consensus       270 ~~~~~~-~~~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          270 LGHIPT-PGTASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             EEEEEC-SSCCCEEEECTTSCEEEEEETTEEEE
T ss_pred             EEEEEC-CCceeEEEEeCCCCEEEEEcCCeEEE
Confidence              1111 22588999999999888888765443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.61  E-value=5.9e-11  Score=96.67  Aligned_cols=266  Identities=9%  Similarity=-0.016  Sum_probs=166.5

Q ss_pred             cccceeEeeEeccCCcceeeeeecc---ccccccceee-ec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCcee
Q psy11524         42 RYDGTVINYPISPYISVLHSYAASH---SWPQALSLCR-TL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKAT  116 (323)
Q Consensus        42 ~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~  116 (323)
                      .....+.++.+.++|.....-...+   .++...+... .+ .....+.+++++++|+..++. ...+.|..++..+...
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~-~~~~~v~~~d~~g~~~   95 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTE-NGANKIGKLSKKGGFT   95 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEE-TTTTEEEEECTTSCEE
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEe-cCCCeEEEECCCCCeE
Confidence            3345667888888875332111111   1333322211 11 234679999999999866654 4335888898775544


Q ss_pred             Eee--ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeE-eecCCCceeEEEEecCCCEEEEEeCC-eEEEE
Q psy11524        117 KWQ--AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYS-SLTHDHPISSLAWAPGGDMFAVGSYN-TLRLC  192 (323)
Q Consensus       117 ~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~  192 (323)
                      .+.  .....+.++++.++|+++++...++.|.   .++.+++.... +......+..++++++|+++++...+ .|..+
T Consensus        96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~---~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~  172 (300)
T 2qc5_A           96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIG---KLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI  172 (300)
T ss_dssp             EEECSSTTCCEEEEEECSTTCEEEEETTTTEEE---EECTTSCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred             EecCCCCCCCCccceECCCCCEEEEccCCCeEE---EECCCCCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence            332  2346789999999999888877788888   99988444322 22234568899999999865555444 89999


Q ss_pred             eCCCCeeee-cCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEE
Q psy11524        193 DKVGWSHSL-DKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAF  270 (323)
Q Consensus       193 d~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~  270 (323)
                      |..+..... .......+..++++++|+..++....+ |.+||. +++..... .......+.+++++++|.     |.+
T Consensus       173 ~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~d~~g~-----l~v  245 (300)
T 2qc5_A          173 TNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD-IPTPNARPHAITAGKNSE-----IWF  245 (300)
T ss_dssp             CTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECSTTC-----EEE
T ss_pred             CCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE-CCCCCCCceEEEECCCCC-----EEE
Confidence            986543332 222345689999999998766666667 999997 55544321 333456688999999873     333


Q ss_pred             EeC-CCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        271 IDK-NRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       271 ~~~-~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      .+. ++.+..++....    ........+.+++++++|++.++.. + .|..++.
T Consensus       246 ~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          246 TEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             EETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             eccCCCeEEEECCCCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            332 234444443211    0111245678999999998666555 4 6666654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.60  E-value=2.7e-12  Score=104.84  Aligned_cols=219  Identities=13%  Similarity=0.056  Sum_probs=141.6

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeee
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLY  160 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~  160 (323)
                      ..-..+..|+|++..|+......+.|+.|+..+...........+.+++++|+|+++++.  +..|.   +||.++....
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~--~~~l~---~~d~~~g~~~   86 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVATI--GTKFC---ALNWKEQSAV   86 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEEE--TTEEE---EEETTTTEEE
T ss_pred             CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEEE--CCeEE---EEECCCCcEE
Confidence            345678999998877777766667899999876633333456789999999999965553  55677   9999765555


Q ss_pred             EeecC-----CCceeEEEEecCCCEEEEEeC----------C--eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEE
Q psy11524        161 SSLTH-----DHPISSLAWAPGGDMFAVGSY----------N--TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAG  223 (323)
Q Consensus       161 ~~~~~-----~~~v~~~~~~p~~~~l~~~~~----------~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  223 (323)
                      .+...     ...+..++++|+|+++++...          .  .|+.+|..+.... ..........++|+|+++.|+.
T Consensus        87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv  165 (297)
T 3g4e_A           87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYY  165 (297)
T ss_dssp             EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEE
T ss_pred             EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEE
Confidence            44322     235788999999997665421          1  4555555443322 2223345789999999997765


Q ss_pred             Ee-cCc-EEEEEc--CCCceee--ee-cCCCCccceEEEEEccCCCCccceEEEEe-CCCCeEEEecccc----cCCCCc
Q psy11524        224 AC-ANV-IHIFDI--SSSSSSN--VT-APLSHSHEITQLAVNQTGSLQERHVAFID-KNRDLYLSMWSHS----LDKPDT  291 (323)
Q Consensus       224 ~~-~d~-i~iwd~--~~~~~~~--~~-~~~~~~~~v~~~~~~p~g~~~d~~l~~~~-~~~~~~~~~~~~~----~~~~~~  291 (323)
                      +. .++ |.+||+  .++....  .+ .+.........++++++|    + |.+.. ..+.+..|+..++    ....+.
T Consensus       166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G----~-lwva~~~~~~v~~~d~~tG~~~~~i~~p~  240 (297)
T 3g4e_A          166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG----K-LWVACYNGGRVIRLDPVTGKRLQTVKLPV  240 (297)
T ss_dssp             EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS----C-EEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred             ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC----C-EEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence            54 456 999987  4554321  10 123334567889999987    3 33332 2344566665422    222335


Q ss_pred             cceeEEEEe-eCCCeeEeee
Q psy11524        292 GSVYDLVWS-SDATQIAGAC  310 (323)
Q Consensus       292 ~~v~~~~~s-~~g~~l~s~~  310 (323)
                      ..+++++|. |+++.|+.++
T Consensus       241 ~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          241 DKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             SBEEEEEEESGGGCEEEEEE
T ss_pred             CCceEEEEeCCCCCEEEEEc
Confidence            678999999 8988776444

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.60  E-value=4.2e-12  Score=105.16  Aligned_cols=217  Identities=10%  Similarity=-0.013  Sum_probs=138.3

Q ss_pred             CEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEe
Q psy11524         83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSS  162 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~  162 (323)
                      -..++.|+|+++.++......+.|+.|+..+...........+.+++|+|+|+++++. .+ .|.   +||.++.....+
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~---~~d~~~g~~~~~  124 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DD-GLF---LRDTATGVLTLH  124 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TT-EEE---EEETTTCCEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-CC-CEE---EEECCCCcEEEE
Confidence            4578899998777777765557899998876533222345689999999999877765 33 477   999865554444


Q ss_pred             ecC-----CCceeEEEEecCCCEEEEEeC-------CeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEe-cCc-
Q psy11524        163 LTH-----DHPISSLAWAPGGDMFAVGSY-------NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGAC-ANV-  228 (323)
Q Consensus       163 ~~~-----~~~v~~~~~~p~~~~l~~~~~-------~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~-  228 (323)
                      ...     ...+.+++++|+|+++++...       +.|+.+| .+ ..............++|+|+|+.|+.+. .++ 
T Consensus       125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g-~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~  202 (326)
T 2ghs_A          125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KG-KVTKLFADISIPNSICFSPDGTTGYFVDTKVNR  202 (326)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TT-EEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CC-cEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence            322     235889999999997665531       2566677 43 3332222334577899999998776654 456 


Q ss_pred             EEEEEcC--CC-cee--eee-cCCCCccceEEEEEccCCCCccceEEEEe-CCCCeEEEecccc---cCCCCccceeEEE
Q psy11524        229 IHIFDIS--SS-SSS--NVT-APLSHSHEITQLAVNQTGSLQERHVAFID-KNRDLYLSMWSHS---LDKPDTGSVYDLV  298 (323)
Q Consensus       229 i~iwd~~--~~-~~~--~~~-~~~~~~~~v~~~~~~p~g~~~d~~l~~~~-~~~~~~~~~~~~~---~~~~~~~~v~~~~  298 (323)
                      |.+||+.  ++ +..  ..+ .+.........++++++|    . +.+.. ..+.+..++....   ....+...+.+++
T Consensus       203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G----~-lwva~~~~~~v~~~d~~g~~~~~i~~~~~~~~~~a  277 (326)
T 2ghs_A          203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG----H-IWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPA  277 (326)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS----C-EEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEE
T ss_pred             EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC----C-EEEEEeCCCEEEEECCCCCEEEEEECCCCCcEEEE
Confidence            9999986  55 321  110 023334556788999887    2 33332 2344555554321   1223345789999


Q ss_pred             Ee-eCCCeeEeeec
Q psy11524        299 WS-SDATQIAGACA  311 (323)
Q Consensus       299 ~s-~~g~~l~s~~~  311 (323)
                      |+ |+++.|+.++.
T Consensus       278 f~g~d~~~L~vt~~  291 (326)
T 2ghs_A          278 FIGPDASRLLVTSA  291 (326)
T ss_dssp             EESTTSCEEEEEEB
T ss_pred             EecCCCCEEEEEec
Confidence            98 88887754443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.59  E-value=4.2e-11  Score=97.54  Aligned_cols=229  Identities=9%  Similarity=-0.016  Sum_probs=155.4

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEe--eccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKW--QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGR  157 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~  157 (323)
                      ....+.+++++++|+..++. ...+.|..++..+....+  ......+.++++.++|+++++...++.|.   .+|.+++
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~---~~d~~g~   93 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQ-HKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIG---KLSKKGG   93 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEE-TTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE---EECTTSC
T ss_pred             CCCCcceeeECCCCCEEEEc-CCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEE---EECCCCC
Confidence            46788999999999866654 333588889887444333  23346789999999999888777788898   9998844


Q ss_pred             eeeEee--cCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeee-cCCCCccEEEEEEcCCCCEEEEEecCc-EEEE
Q psy11524        158 QLYSSL--THDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSL-DKPDTGSVYDLVWSNDATQIAGACANV-IHIF  232 (323)
Q Consensus       158 ~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iw  232 (323)
                      . ..+.  .....+.+++++++|+++++...+ .|..+|..+..... .......+..++++++|+..++...++ |..+
T Consensus        94 ~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~  172 (300)
T 2qc5_A           94 F-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI  172 (300)
T ss_dssp             E-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred             e-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence            3 3332  234568999999999877766554 99999987543332 222345789999999998666655567 9999


Q ss_pred             EcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCC-CCeEEEecccc----cCCCCccceeEEEEeeCCCeeE
Q psy11524        233 DISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKN-RDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIA  307 (323)
Q Consensus       233 d~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~-~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~  307 (323)
                      |. +++.... ........+..++++++|     .+.+.+.. +.+..++....    ....+...+.+++++++|+..+
T Consensus       173 ~~-~g~~~~~-~~~~~~~~~~~i~~d~~g-----~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v  245 (300)
T 2qc5_A          173 TN-TGKLEEY-PLPTNAAAPVGITSGNDG-----ALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWF  245 (300)
T ss_dssp             CT-TCCEEEE-ECSSTTCCEEEEEECTTS-----SEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEE
T ss_pred             CC-CCcEEEe-eCCCCCCCcceEEECCCC-----CEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEE
Confidence            98 5554432 133344568899999986     33343332 33444444211    1112245688999999998777


Q ss_pred             eeecCCeEEEEEe
Q psy11524        308 GACANGSLLLGTI  320 (323)
Q Consensus       308 s~~~dg~i~~~~l  320 (323)
                      +...++.|..++.
T Consensus       246 ~~~~~~~i~~~~~  258 (300)
T 2qc5_A          246 TEWGANQIGRITN  258 (300)
T ss_dssp             EETTTTEEEEECT
T ss_pred             eccCCCeEEEECC
Confidence            6666788887764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.59  E-value=2e-13  Score=124.74  Aligned_cols=215  Identities=7%  Similarity=-0.056  Sum_probs=139.3

Q ss_pred             cccceeEeeEeccCCcceeeeee-ccccccccceeee-------cCCCCCE--EEEEEcCCCCeEEEEeeCC--------
Q psy11524         42 RYDGTVINYPISPYISVLHSYAA-SHSWPQALSLCRT-------LNVSPPV--YSAAWSPDSNKVLLTQAKS--------  103 (323)
Q Consensus        42 ~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~~~v--~~~~~sp~~~~l~~~~~~~--------  103 (323)
                      +|...+.++.|||||+.++.... +|+.+.++.++..       ..+...+  ..++|+|||+.|++++.+.        
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence            45667889999999987764443 3432223322211       1122222  6899999999999987653        


Q ss_pred             ----eEEEEeCCCCce----eEe--eccCCCeEEEEECCCCCEEEEEcCCC-ceEeeeEEeCCCCeeeEeecCCCceeEE
Q psy11524        104 ----LVIKPLSPNNKA----TKW--QAHDGLILKVAWCSSTDLILSGGEDC-KYKASFVWDTDGRQLYSSLTHDHPISSL  172 (323)
Q Consensus       104 ----~~v~~~~~~~~~----~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~i~v~d~~~~~~~~~~~~~~~v~~~  172 (323)
                          ..|++|++.+..    ..+  ..+...+..+.|+|||++|+..+.++ .-..|++++..+.....+..+...+...
T Consensus       198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~  277 (695)
T 2bkl_A          198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEV  277 (695)
T ss_dssp             GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEE
T ss_pred             CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEE
Confidence                239999887652    222  23456788999999999988877665 2223348877555566666666666666


Q ss_pred             EEecCCCEEEEEeC----C-eEEEEeCCCCe----eeecCCC-CccEEEEEEcCCCCEEEEEecCc-EEEEEcC-CCcee
Q psy11524        173 AWAPGGDMFAVGSY----N-TLRLCDKVGWS----HSLDKPD-TGSVYDLVWSNDATQIAGACANV-IHIFDIS-SSSSS  240 (323)
Q Consensus       173 ~~~p~~~~l~~~~~----~-~i~i~d~~~~~----~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~-~~~~~  240 (323)
                      .+ ++|. ++..+.    + .|.+||+.+..    ......+ ...+..++|+ ++.++++...|+ .+||.+. +++..
T Consensus       278 ~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~  354 (695)
T 2bkl_A          278 HA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPV  354 (695)
T ss_dssp             EE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEE
T ss_pred             Ee-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCee
Confidence            66 5666 554443    3 89999987532    2333333 4467888998 677888888888 6666543 35555


Q ss_pred             eeecCCCC-ccceEEEEEccCC
Q psy11524        241 NVTAPLSH-SHEITQLAVNQTG  261 (323)
Q Consensus       241 ~~~~~~~~-~~~v~~~~~~p~g  261 (323)
                      ..  +..+ ...+..++++|++
T Consensus       355 ~~--l~~~~~~~v~~~~~s~d~  374 (695)
T 2bkl_A          355 RT--VQLPGVGAASNLMGLEDL  374 (695)
T ss_dssp             EE--CCCSSSSEECCCBSCTTC
T ss_pred             EE--ecCCCCeEEEEeecCCCC
Confidence            54  3333 5667778888887

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.57  E-value=2.8e-11  Score=107.02  Aligned_cols=264  Identities=8%  Similarity=-0.048  Sum_probs=168.9

Q ss_pred             eeEeeEeccCCcceeeeeecc---cccc---ccceeeecCCCCCEEEEEEc----CCCCeEEEEeeCCeEEEEeCCCCc-
Q psy11524         46 TVINYPISPYISVLHSYAASH---SWPQ---ALSLCRTLNVSPPVYSAAWS----PDSNKVLLTQAKSLVIKPLSPNNK-  114 (323)
Q Consensus        46 ~v~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~v~~~~~s----p~~~~l~~~~~~~~~v~~~~~~~~-  114 (323)
                      .+..+.|+|||+.++....++   .+|.   +.++...+........++|+    |||++++++....+.+.++|..+. 
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~  277 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE  277 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc
Confidence            345789999998766433222   1342   55555666666677899999    799999999888789999987654 


Q ss_pred             -eeEeec----------cCC-CeEEEEECCCCCE-EEEEcCCCceEeeeEEeCCCC-e--eeEeecCCCceeEEEEecCC
Q psy11524        115 -ATKWQA----------HDG-LILKVAWCSSTDL-ILSGGEDCKYKASFVWDTDGR-Q--LYSSLTHDHPISSLAWAPGG  178 (323)
Q Consensus       115 -~~~~~~----------~~~-~v~~~~~~~~~~~-l~~~~~d~~i~~i~v~d~~~~-~--~~~~~~~~~~v~~~~~~p~~  178 (323)
                       +..+..          |.. .+..+..++++.. ++....+|.|.   ++|.... .  +..+ .......++.|+|+|
T Consensus       278 ~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~---~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdg  353 (567)
T 1qks_A          278 PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL---LVDYTDLNNLKTTEI-SAERFLHDGGLDGSH  353 (567)
T ss_dssp             EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE---EEETTCSSEEEEEEE-ECCSSEEEEEECTTS
T ss_pred             EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE---EEecCCCccceeeee-eccccccCceECCCC
Confidence             333321          222 6788999998654 45555678888   9998532 1  2222 234457789999999


Q ss_pred             CEEEEEeC--CeEEEEeCCCCeee-ec-----CCCCccEEEEEEcCCCCEEE-EEe-cCc-EEEEEcCC-------Ccee
Q psy11524        179 DMFAVGSY--NTLRLCDKVGWSHS-LD-----KPDTGSVYDLVWSNDATQIA-GAC-ANV-IHIFDISS-------SSSS  240 (323)
Q Consensus       179 ~~l~~~~~--~~i~i~d~~~~~~~-~~-----~~~~~~v~~~~~~~~~~~l~-~~~-~d~-i~iwd~~~-------~~~~  240 (323)
                      ++++++..  +.|.++|+.+.++. ..     ..|.+.-..+ ++|++..+. +.. .++ |.++|..+       .+.+
T Consensus       354 r~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv  432 (567)
T 1qks_A          354 RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKIL  432 (567)
T ss_dssp             CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE
T ss_pred             CEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEE
Confidence            99988876  49999998865433 11     1233222222 688755544 443 356 99999887       5566


Q ss_pred             eeecCCCCccceEEEEEccCCCCccceEEEEeC-------CCCeEEEecccc-----c-------------CCCCcccee
Q psy11524        241 NVTAPLSHSHEITQLAVNQTGSLQERHVAFIDK-------NRDLYLSMWSHS-----L-------------DKPDTGSVY  295 (323)
Q Consensus       241 ~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~-------~~~~~~~~~~~~-----~-------------~~~~~~~v~  295 (323)
                      +++  ......-..++.+|++    ..+.+-..       ...+.++++...     .             .......+.
T Consensus       433 ~~i--~~~g~g~~~i~~~p~~----~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  506 (567)
T 1qks_A          433 DSF--PALGGGSLFIKTHPNS----QYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVV  506 (567)
T ss_dssp             EEE--ECSCSCCCCEECCTTC----SEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEE
T ss_pred             EEE--ecCCCCCEEEEeCCCC----CeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceE
Confidence            663  3222233446789998    45554331       234555555442     0             000135789


Q ss_pred             EEEEeeCCCeeEeee-----cCCeEEEEEe
Q psy11524        296 DLVWSSDATQIAGAC-----ANGSLLLGTI  320 (323)
Q Consensus       296 ~~~~s~~g~~l~s~~-----~dg~i~~~~l  320 (323)
                      .+.|+|+|+++..+.     .++.|.++|.
T Consensus       507 ~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~  536 (567)
T 1qks_A          507 QGEFNKDGTEVWFSVWNGKDQESALVVVDD  536 (567)
T ss_dssp             EEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred             eeeECCCCCEEEEEeecCCCCCCcEEEEEC
Confidence            999999999777553     3788999874

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.56  E-value=8.6e-12  Score=110.30  Aligned_cols=242  Identities=10%  Similarity=0.005  Sum_probs=156.8

Q ss_pred             cccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCC--Cc--eeEeeccCCCeEEEEEC----CCCCEEEEEc
Q psy11524         70 QALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPN--NK--ATKWQAHDGLILKVAWC----SSTDLILSGG  141 (323)
Q Consensus        70 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~--~~--~~~~~~~~~~v~~~~~~----~~~~~l~~~~  141 (323)
                      .+.++...+.....+..+.|+|||+++++++.+ +.|.+||+.  +.  ...+.. ......++|+    |||+++++++
T Consensus       185 ~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~d-g~V~viD~~~~t~~~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n  262 (567)
T 1qks_A          185 STYEIKTVLDTGYAVHISRLSASGRYLFVIGRD-GKVNMIDLWMKEPTTVAEIKI-GSEARSIETSKMEGWEDKYAIAGA  262 (567)
T ss_dssp             TTCCEEEEEECSSCEEEEEECTTSCEEEEEETT-SEEEEEETTSSSCCEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEE
T ss_pred             CCCeEEEEEeCCCCccceEECCCCCEEEEEcCC-CeEEEEECCCCCCcEeEEEec-CCCCceeEEccccCCCCCEEEEEE
Confidence            345566667677788899999999999988765 689999984  32  344443 3346799999    6999888776


Q ss_pred             C-CCceEeeeEEeCC-CCeeeEeecC-----------CCceeEEEEecCCCEEEEEeC--CeEEEEeCCCCe-ee-ecCC
Q psy11524        142 E-DCKYKASFVWDTD-GRQLYSSLTH-----------DHPISSLAWAPGGDMFAVGSY--NTLRLCDKVGWS-HS-LDKP  204 (323)
Q Consensus       142 ~-d~~i~~i~v~d~~-~~~~~~~~~~-----------~~~v~~~~~~p~~~~l~~~~~--~~i~i~d~~~~~-~~-~~~~  204 (323)
                      . ++.+.   ++|.. .+.+..+...           ...+..+..++++..+++...  +.|.++|..... .. ....
T Consensus       263 ~~~~~v~---ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~  339 (567)
T 1qks_A          263 YWPPQYV---IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS  339 (567)
T ss_dssp             EETTEEE---EEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE
T ss_pred             ccCCeEE---EEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee
Confidence            5 58899   99985 4555444321           125778889998777666555  499999976431 11 1112


Q ss_pred             CCccEEEEEEcCCCCEEEEEec-Cc-EEEEEcCCCceeeeecC-C--CCccceEEEEEccCCCCccceEEE-Ee-CCCCe
Q psy11524        205 DTGSVYDLVWSNDATQIAGACA-NV-IHIFDISSSSSSNVTAP-L--SHSHEITQLAVNQTGSLQERHVAF-ID-KNRDL  277 (323)
Q Consensus       205 ~~~~v~~~~~~~~~~~l~~~~~-d~-i~iwd~~~~~~~~~~~~-~--~~~~~v~~~~~~p~g~~~d~~l~~-~~-~~~~~  277 (323)
                      .......+.|+|+|++++++.. ++ |.++|..+++.+..+.. .  .|.+.-..+ ++|++    +.+.+ .. .++.+
T Consensus       340 ~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~----g~v~~t~~~g~~~V  414 (567)
T 1qks_A          340 AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTF----GPVWATSHMGDDSV  414 (567)
T ss_dssp             CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTT----EEEEEEEBSSSSEE
T ss_pred             ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCC----CcEEEeCCCCCCeE
Confidence            3445778999999999888775 44 99999999988776433 1  232212122 57765    33332 22 22445


Q ss_pred             EEEecccc-----------cCCCCccceeEEEEeeCCCeeEeeec-------CCeEEEEEee
Q psy11524        278 YLSMWSHS-----------LDKPDTGSVYDLVWSSDATQIAGACA-------NGSLLLGTII  321 (323)
Q Consensus       278 ~~~~~~~~-----------~~~~~~~~v~~~~~s~~g~~l~s~~~-------dg~i~~~~l~  321 (323)
                      .+++....           ..+..+..-..+..+|++++|.....       ...|.++++.
T Consensus       415 svid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~  476 (567)
T 1qks_A          415 ALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIK  476 (567)
T ss_dssp             EEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGG
T ss_pred             EEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECC
Confidence            55554431           01111222244678999998887653       4588998874

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.55  E-value=1.4e-11  Score=99.05  Aligned_cols=228  Identities=8%  Similarity=-0.030  Sum_probs=144.8

Q ss_pred             eeEeeEeccCCccee-eeeecc---ccccccceeeec--CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCcee-Ee
Q psy11524         46 TVINYPISPYISVLH-SYAASH---SWPQALSLCRTL--NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKAT-KW  118 (323)
Q Consensus        46 ~v~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~-~~  118 (323)
                      ...++.++|+|.... .-...+   .|+........+  .+...+.+++++++|+.+++. . ++.|..|+..+... .+
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~-~-~~~i~~~d~~~~~~~~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTD-F-NNRVVTLAAGSNNQTVL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEE-T-TTEEEEECTTCSCCEEC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEc-C-CCEEEEEeCCCceEeee
Confidence            455778888875222 101111   133222222222  234578899999999855543 3 45899999877632 23


Q ss_pred             e-ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeE-eecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCC
Q psy11524        119 Q-AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYS-SLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKV  195 (323)
Q Consensus       119 ~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~  195 (323)
                      . .....+.++++.|+|+++++...++.|.   +|+........ .......+.+++++|+|+++++... +.|.+||..
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~---~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~  179 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVV---KLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE  179 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEE---EECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEE---EEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecC
Confidence            2 2235789999999999887777788898   99865332222 2222346788999999986665555 499999988


Q ss_pred             CCeeeec-CCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeC
Q psy11524        196 GWSHSLD-KPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDK  273 (323)
Q Consensus       196 ~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~  273 (323)
                      +...... ......+..++++++|..+++...++ |.+||.........  ...+...+.+++++|+|    ..+..-..
T Consensus       180 ~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~--~~~~~~~p~~i~~~~~g----~l~v~~~~  253 (270)
T 1rwi_B          180 SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL--PFTGLNTPLAVAVDSDR----TVYVADRG  253 (270)
T ss_dssp             TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEEC--CCCSCSCEEEEEECTTC----CEEEEEGG
T ss_pred             CCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceee--ccCCCCCceeEEECCCC----CEEEEECC
Confidence            6544332 22336789999999997666666677 99999866544332  22333568899999997    53333345


Q ss_pred             CCCeEEEeccc
Q psy11524        274 NRDLYLSMWSH  284 (323)
Q Consensus       274 ~~~~~~~~~~~  284 (323)
                      ++.+.+++...
T Consensus       254 ~~~v~~~~~~~  264 (270)
T 1rwi_B          254 NDRVVKLTSLE  264 (270)
T ss_dssp             GTEEEEECCCG
T ss_pred             CCEEEEEcCCC
Confidence            66777777655

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.54  E-value=2.8e-12  Score=118.01  Aligned_cols=219  Identities=9%  Similarity=0.030  Sum_probs=138.8

Q ss_pred             cCCCCeEEEEeeCC----eEEEEeCCC---C-ceeEe-------eccCCCeEEEEECCCCCEEEEEcCC-C----ceEee
Q psy11524         90 SPDSNKVLLTQAKS----LVIKPLSPN---N-KATKW-------QAHDGLILKVAWCSSTDLILSGGED-C----KYKAS  149 (323)
Q Consensus        90 sp~~~~l~~~~~~~----~~v~~~~~~---~-~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d-~----~i~~i  149 (323)
                      +|+|+++++...+.    ..++..+..   + ....+       ..+...+..++|||||++||.+..+ |    .|+  
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~--  192 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK--  192 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE--
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE--
Confidence            39999999887544    345665543   2 23332       1222367899999999999887654 3    466  


Q ss_pred             eEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeCC---------------eEEEEeCCCCe---eeecC--CCCccE
Q psy11524        150 FVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN---------------TLRLCDKVGWS---HSLDK--PDTGSV  209 (323)
Q Consensus       150 ~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~---------------~i~i~d~~~~~---~~~~~--~~~~~v  209 (323)
                       +||+++............+..++|+|| +.|+.++.+               .|++|++.+..   .....  .+...+
T Consensus       193 -v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~  270 (741)
T 1yr2_A          193 -FVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRG  270 (741)
T ss_dssp             -EEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred             -EEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEE
Confidence             999975554443222223467899999 988888763               38899986432   22222  233458


Q ss_pred             EEEEEcCCCCEEEEEec-----Cc-EEEEEcCCC--ceeeeecCCCCccceEEEEEccCCCCccceEEEEeCC----CCe
Q psy11524        210 YDLVWSNDATQIAGACA-----NV-IHIFDISSS--SSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKN----RDL  277 (323)
Q Consensus       210 ~~~~~~~~~~~l~~~~~-----d~-i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~----~~~  277 (323)
                      ..+.|+|||++|+..+.     .. |++||+.++  +....  +..+........ +|+|    +.+.+....    ..+
T Consensus       271 ~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~--l~~~~~~~~~~~-~~dg----~~l~~~s~~~~~~~~l  343 (741)
T 1yr2_A          271 HGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTA--LIPDLKAQWDFV-DGVG----DQLWFVSGDGAPLKKI  343 (741)
T ss_dssp             EEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEE--EECSSSSCEEEE-EEET----TEEEEEECTTCTTCEE
T ss_pred             EEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEE--ecCCCCceEEEE-eccC----CEEEEEECCCCCCCEE
Confidence            89999999998887763     34 999999877  41233  233333444443 4787    556555432    236


Q ss_pred             EEEeccc--c----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        278 YLSMWSH--S----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       278 ~~~~~~~--~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      .++++..  .    +...+...+..++|+ ++.++++...|+..++|.+
T Consensus       344 ~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~  391 (741)
T 1yr2_A          344 VRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAF  391 (741)
T ss_dssp             EEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred             EEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence            6666543  1    223334557778887 6678889999999888865

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.52  E-value=8.4e-12  Score=106.45  Aligned_cols=225  Identities=9%  Similarity=-0.040  Sum_probs=142.3

Q ss_pred             CCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCC--ceEeeeEEeCCCCe
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDC--KYKASFVWDTDGRQ  158 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~i~v~d~~~~~  158 (323)
                      .....++|+|+|+.++ +...++.|+.|+..+. +..+........ ++|+|+++.|+++..++  .|.   +++..+..
T Consensus       131 ~~P~~la~d~~g~lyv-~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~---~~d~~~~~  205 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLA-YQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVY---VYMKASGW  205 (409)
T ss_dssp             CCEEEEEECSTTEEEE-EETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEE---EEEGGGTT
T ss_pred             CCceEEEEeCCCCEEE-EecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEE---EEEcCCCc
Confidence            4688999999998554 4444468999998765 444433333334 99999999998888766  566   88875332


Q ss_pred             -eeEe---ec-CCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeec-----CCCCccE-E-EEEEcCC-CCEEEEE
Q psy11524        159 -LYSS---LT-HDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLD-----KPDTGSV-Y-DLVWSND-ATQIAGA  224 (323)
Q Consensus       159 -~~~~---~~-~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~-----~~~~~~v-~-~~~~~~~-~~~l~~~  224 (323)
                       ...+   .. ....+.+++++|++..|+++..+ .|+.||..+......     .+....- . .++|+|+ +.++++-
T Consensus       206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d  285 (409)
T 3hrp_A          206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD  285 (409)
T ss_dssp             CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred             eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence             2233   12 44567899999954455555554 899999875543332     2222222 3 9999995 5444444


Q ss_pred             ecCc-EEEEEcCCCceeeeecCCCC---------------ccceEEEEEccCCCCccceEEEEeC--CCCeEEEecccc-
Q psy11524        225 CANV-IHIFDISSSSSSNVTAPLSH---------------SHEITQLAVNQTGSLQERHVAFIDK--NRDLYLSMWSHS-  285 (323)
Q Consensus       225 ~~d~-i~iwd~~~~~~~~~~~~~~~---------------~~~v~~~~~~p~g~~~d~~l~~~~~--~~~~~~~~~~~~-  285 (323)
                      ..++ |+.|+.... .. .  +.++               -.....++++|+|.     |.+.+.  +..+..++...+ 
T Consensus       286 ~~~~~I~~~~~~g~-~~-~--~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-----lyvad~~~~~~I~~~~~~~G~  356 (409)
T 3hrp_A          286 QNLSSVYKITPDGE-CE-W--FCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-----FYIVDGFKGYCLRKLDILDGY  356 (409)
T ss_dssp             TTTTEEEEECTTCC-EE-E--EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-----EEEEETTTTCEEEEEETTTTE
T ss_pred             CCCCEEEEEecCCC-EE-E--EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-----EEEEeCCCCCEEEEEECCCCE
Confidence            5566 999996543 22 1  1111               13478899999983     444443  233444442221 


Q ss_pred             --cCCC---------------CccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        286 --LDKP---------------DTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       286 --~~~~---------------~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                        ...+               .-.....++++|+|.++++-..+++|+.+.+
T Consensus       357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence              0000               0135789999999988888888999988876

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.51  E-value=4.1e-11  Score=97.81  Aligned_cols=189  Identities=8%  Similarity=-0.027  Sum_probs=126.7

Q ss_pred             eecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeecc-----CCCeEEEEECCCCCEEEEEcCC------
Q psy11524         76 RTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQAH-----DGLILKVAWCSSTDLILSGGED------  143 (323)
Q Consensus        76 ~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d------  143 (323)
                      ..+.....+.+++++|+|++++ +. .. .|..|+..+. ...+...     ...+..++++|+|+++++....      
T Consensus        48 ~~~~~~~~~~~i~~~~dG~l~v-~~-~~-~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~  124 (297)
T 3g4e_A           48 QRVTMDAPVSSVALRQSGGYVA-TI-GT-KFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAV  124 (297)
T ss_dssp             EEEECSSCEEEEEEBTTSSEEE-EE-TT-EEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTB
T ss_pred             EEEeCCCceEEEEECCCCCEEE-EE-CC-eEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCccccccc
Confidence            3445667899999999999554 43 43 6778887654 3333221     2357899999999976654322      


Q ss_pred             ---CceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC--CeEEEEeCC--CCee---e---ecCCCCccEE
Q psy11524        144 ---CKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY--NTLRLCDKV--GWSH---S---LDKPDTGSVY  210 (323)
Q Consensus       144 ---~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--~~i~i~d~~--~~~~---~---~~~~~~~~v~  210 (323)
                         .... |+.++.+++.. .+.........++|+|+++.++.+..  +.|..||+.  +..+   .   ........+.
T Consensus       125 ~~~~~~~-l~~~d~~g~~~-~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~  202 (297)
T 3g4e_A          125 LERHQGA-LYSLFPDHHVK-KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPD  202 (297)
T ss_dssp             CCTTCEE-EEEECTTSCEE-EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEE
T ss_pred             ccCCCcE-EEEEECCCCEE-EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCC
Confidence               2223 22555554433 33334445789999999998776665  489999863  2221   1   1222345688


Q ss_pred             EEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEc-cCCCCccceEEEEeCCC
Q psy11524        211 DLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVN-QTGSLQERHVAFIDKNR  275 (323)
Q Consensus       211 ~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-p~g~~~d~~l~~~~~~~  275 (323)
                      .++++++|++.++...++ |..||..+++.+..  +..+...+++++|. |++    +.|.+.+...
T Consensus       203 g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~--i~~p~~~~t~~~f~g~d~----~~L~vt~~~~  263 (297)
T 3g4e_A          203 GMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQT--VKLPVDKTTSCCFGGKNY----SEMYVTCARD  263 (297)
T ss_dssp             EEEEBTTSCEEEEEETTTEEEEECTTTCCEEEE--EECSSSBEEEEEEESGGG----CEEEEEEBCT
T ss_pred             eeEECCCCCEEEEEcCCCEEEEEcCCCceEEEE--EECCCCCceEEEEeCCCC----CEEEEEcCCc
Confidence            999999998777777777 99999988998877  34445678999998 887    7777776543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.51  E-value=4.9e-11  Score=97.93  Aligned_cols=193  Identities=9%  Similarity=0.048  Sum_probs=130.7

Q ss_pred             CCCCEEEEEEcCC-CCeEEEEeeCCeEEEEeCCCCceeEe-ec-----cCCCeEEEEECCCCCEEEEEcCC---------
Q psy11524         80 VSPPVYSAAWSPD-SNKVLLTQAKSLVIKPLSPNNKATKW-QA-----HDGLILKVAWCSSTDLILSGGED---------  143 (323)
Q Consensus        80 ~~~~v~~~~~sp~-~~~l~~~~~~~~~v~~~~~~~~~~~~-~~-----~~~~v~~~~~~~~~~~l~~~~~d---------  143 (323)
                      +...+.+++++++ |+.++ +...+ .|..|+..+....+ ..     ....+.++++.|+|+++++...+         
T Consensus        69 ~~~~~~~i~~~~~~g~l~v-~~~~~-~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFV-ADMRL-GLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EECCEEEEEECSSSSEEEE-EETTT-EEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCCCceEEEecCCCcEEE-EECCC-CEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            3467899999999 66444 44443 67778877444333 21     12357899999999887776654         


Q ss_pred             ------CceEeeeEEeCCCCeeeEeecCCCceeEEEEe----cCCCEEEEEeC-C-eEEEEeCC-CCe------eeecCC
Q psy11524        144 ------CKYKASFVWDTDGRQLYSSLTHDHPISSLAWA----PGGDMFAVGSY-N-TLRLCDKV-GWS------HSLDKP  204 (323)
Q Consensus       144 ------~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~----p~~~~l~~~~~-~-~i~i~d~~-~~~------~~~~~~  204 (323)
                            +.|.   .++.+++ ...+.........++|+    |+++.++++.. + .|.+||.. ...      ......
T Consensus       147 ~~~~~~~~l~---~~~~~g~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~  222 (314)
T 1pjx_A          147 SMQEKFGSIY---CFTTDGQ-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG  222 (314)
T ss_dssp             TTSSSCEEEE---EECTTSC-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC
T ss_pred             cccCCCCeEE---EECCCCC-EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCC
Confidence                  4555   7877643 33333334456889999    99977666654 4 99999965 222      112223


Q ss_pred             CC-ccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeC-CCCeEEEe
Q psy11524        205 DT-GSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDK-NRDLYLSM  281 (323)
Q Consensus       205 ~~-~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~-~~~~~~~~  281 (323)
                      +. ..+..++++++|+++++...++ |.+||..+++.+..  +..+...+.+++|+|++    +.|.+.+. ++.+..++
T Consensus       223 ~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~--~~~~~~~~~~i~~~~dg----~~l~v~~~~~~~l~~~~  296 (314)
T 1pjx_A          223 THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMR--IRCPFEKPSNLHFKPQT----KTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEE--EECSSSCEEEEEECTTS----SEEEEEETTTTEEEEEE
T ss_pred             CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEE--EeCCCCCceeEEECCCC----CEEEEEeCCCCeEEEEe
Confidence            33 5688999999998887777778 99999887776665  33444678999999998    66766654 35666666


Q ss_pred             ccc
Q psy11524        282 WSH  284 (323)
Q Consensus       282 ~~~  284 (323)
                      ...
T Consensus       297 ~~~  299 (314)
T 1pjx_A          297 WQR  299 (314)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.50  E-value=2.2e-12  Score=117.74  Aligned_cols=231  Identities=10%  Similarity=0.035  Sum_probs=143.1

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCC----eEEEEeCCCCce-eEeeccCCCeEEEEECCCCCEEEEEcCCCc---------
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKS----LVIKPLSPNNKA-TKWQAHDGLILKVAWCSSTDLILSGGEDCK---------  145 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~----~~v~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~---------  145 (323)
                      +...+..++|||||++||++.+..    ..|+++|+.++. ............++|+ ||+.|+.++.+..         
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~  205 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART  205 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence            455788999999999999875432    479999987762 2221111113577999 9999988887743         


Q ss_pred             -eEeeeEEeCCCCe---eeEe--ec-CCCceeEEEEecCCCEEEEEeC----C-eEEEEeCCCC--eeeecCCCCccEEE
Q psy11524        146 -YKASFVWDTDGRQ---LYSS--LT-HDHPISSLAWAPGGDMFAVGSY----N-TLRLCDKVGW--SHSLDKPDTGSVYD  211 (323)
Q Consensus       146 -i~~i~v~d~~~~~---~~~~--~~-~~~~v~~~~~~p~~~~l~~~~~----~-~i~i~d~~~~--~~~~~~~~~~~v~~  211 (323)
                       -..|++|++....   ...+  .. +.....++.|+|||++|+....    . .++++|+.+.  ....+..+......
T Consensus       206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~  285 (693)
T 3iuj_A          206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVS  285 (693)
T ss_dssp             CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEE
T ss_pred             CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEE
Confidence             1234499985322   2222  22 3345778999999998765432    3 7999998643  34444445555555


Q ss_pred             EEEcCCCCEEEEEec-C---c-EEEEEcCCCce--eeeecCCCCccceEEEEEccCCCCccceEEEEe-CCC--CeEEEe
Q psy11524        212 LVWSNDATQIAGACA-N---V-IHIFDISSSSS--SNVTAPLSHSHEITQLAVNQTGSLQERHVAFID-KNR--DLYLSM  281 (323)
Q Consensus       212 ~~~~~~~~~l~~~~~-d---~-i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~-~~~--~~~~~~  281 (323)
                      . |+++|..|+..+. +   . |..+|+.++..  ...  +..+...+.  .|++++    +.|.+.. .++  .+.+++
T Consensus       286 ~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~--l~~~~~~~~--~~s~~g----~~lv~~~~~~g~~~l~~~d  356 (693)
T 3iuj_A          286 L-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRD--LIPERQQVL--TVHSGS----GYLFAEYMVDATARVEQFD  356 (693)
T ss_dssp             E-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE--EECCCSSCE--EEEEET----TEEEEEEEETTEEEEEEEC
T ss_pred             E-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEE--EecCCCCEE--EEEEEC----CEEEEEEEECCeeEEEEEE
Confidence            4 6676666655443 2   4 89999987654  223  334444444  888888    4454433 333  355555


Q ss_pred             cccc----cCCCCccceeEEEEeeCCCeeEeeecC----CeEEEEEe
Q psy11524        282 WSHS----LDKPDTGSVYDLVWSSDATQIAGACAN----GSLLLGTI  320 (323)
Q Consensus       282 ~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~d----g~i~~~~l  320 (323)
                      +...    +.-...+.+..++++|+++.|+....+    +.++.|++
T Consensus       357 ~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          357 YEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP  403 (693)
T ss_dssp             TTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             CCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence            5432    111124567788888998877755544    77888775

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.50  E-value=1.9e-12  Score=108.38  Aligned_cols=170  Identities=9%  Similarity=-0.009  Sum_probs=124.5

Q ss_pred             CEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc------------eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeee
Q psy11524         83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK------------ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASF  150 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~  150 (323)
                      ++..+++++....+++|+.+  .+.+|++...            ......+.. |..++|  |+++|+++ .++.|+   
T Consensus        39 ~~nlLais~~~gll~a~~~~--~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~---  109 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS--KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALY---  109 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT--EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEE---
T ss_pred             cccEEEEcCCCCEEEEeCCC--EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEE---
Confidence            68999999999999988776  3445753211            112334666 999999  89999998 889999   


Q ss_pred             EEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc
Q psy11524        151 VWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV  228 (323)
Q Consensus       151 v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  228 (323)
                      +||+. -........+..++.++.+.+..  +++++. +.+.+||+.......   +...|++++|||+|  ++.+..|+
T Consensus       110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg  182 (388)
T 1xip_A          110 SLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDR  182 (388)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTS
T ss_pred             EEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCC
Confidence            99985 33344455667778888776543  777777 499999998543332   44689999999999  67899999


Q ss_pred             -EEEEEcCCCce--eeeecC----C---CCccceEEEEEccCCCCccceEEEEe
Q psy11524        229 -IHIFDISSSSS--SNVTAP----L---SHSHEITQLAVNQTGSLQERHVAFID  272 (323)
Q Consensus       229 -i~iwd~~~~~~--~~~~~~----~---~~~~~v~~~~~~p~g~~~d~~l~~~~  272 (323)
                       +++|+...++.  ..++..    .   +|...|.++.|.+++    ..+.++.
T Consensus       183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~----~flv~y~  232 (388)
T 1xip_A          183 SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ----DFLAVFG  232 (388)
T ss_dssp             CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS----EEEEEEE
T ss_pred             cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC----eEEEEEc
Confidence             99999887774  444200    1   367889999999987    5555554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.48  E-value=6.1e-12  Score=101.46  Aligned_cols=176  Identities=11%  Similarity=0.113  Sum_probs=128.4

Q ss_pred             CCCEEEEEcCCCceEeeeEEeC-CCCeeeEeecCC-CceeEEEEecCCCEEEEEeCCeEEEEeCCCCeeeecCCC-CccE
Q psy11524        133 STDLILSGGEDCKYKASFVWDT-DGRQLYSSLTHD-HPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLDKPD-TGSV  209 (323)
Q Consensus       133 ~~~~l~~~~~d~~i~~i~v~d~-~~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~-~~~v  209 (323)
                      .++.|++++.++.|.   +||. +++.+..+..+. ..+.+++++|+|++++ +..+.|+.||..++.+..+... ...+
T Consensus         4 ~~~~lv~~~~~~~v~---~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIA---IINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITRDGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEE---EEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECTTSCEEEEEECCTTCEE
T ss_pred             CCcEEEeeCCCCEEE---EEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECCCCCEEEEEcCCCCccc
Confidence            367899999999999   9999 788888887765 4789999999999888 3335899999976655544433 3468


Q ss_pred             EEEEEcCCCCEEEEEec-Cc-EEEEEcCCCceeeeecCCC----CccceEEEEEccCCC-----CccceEEEEeCCCCeE
Q psy11524        210 YDLVWSNDATQIAGACA-NV-IHIFDISSSSSSNVTAPLS----HSHEITQLAVNQTGS-----LQERHVAFIDKNRDLY  278 (323)
Q Consensus       210 ~~~~~~~~~~~l~~~~~-d~-i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~p~g~-----~~d~~l~~~~~~~~~~  278 (323)
                      .++.+.|+|+++++.+. ++ +..+|. +|+.+.++.+..    +......+++.++|.     ..++.|..++.+ ...
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~  157 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL  157 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence            89999999999999887 67 888885 677766532221    112344566777774     334566666666 345


Q ss_pred             EEecccccCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        279 LSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       279 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      +|.+..      ...+.++...++|+.++++..+++|..++.
T Consensus       158 ~w~~~~------~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~  193 (276)
T 3no2_A          158 LNSVKL------SGTPFSSAFLDNGDCLVACGDAHCFVQLNL  193 (276)
T ss_dssp             EEEEEC------SSCCCEEEECTTSCEEEECBTTSEEEEECT
T ss_pred             EEEEEC------CCCccceeEcCCCCEEEEeCCCCeEEEEeC
Confidence            666654      345567788899999999888888876654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.45  E-value=3.6e-10  Score=93.51  Aligned_cols=214  Identities=8%  Similarity=-0.091  Sum_probs=135.3

Q ss_pred             eEeeEeccCCcceeeeeecc----ccccccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeecc
Q psy11524         47 VINYPISPYISVLHSYAASH----SWPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQAH  121 (323)
Q Consensus        47 v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~  121 (323)
                      .....|+|++..+......+    .|+........+.....+.+++|+|+|+.+++.  .. .|+.|+..+. ...+...
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~--~~-gl~~~d~~~g~~~~~~~~  127 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS--DD-GLFLRDTATGVLTLHAEL  127 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE--TT-EEEEEETTTCCEEEEECS
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE--CC-CEEEEECCCCcEEEEeeC
Confidence            34667888754433221111    133322223334456789999999999877654  33 4888887544 3333221


Q ss_pred             -----CCCeEEEEECCCCCEEEEEcC------CCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC-C-e
Q psy11524        122 -----DGLILKVAWCSSTDLILSGGE------DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-N-T  188 (323)
Q Consensus       122 -----~~~v~~~~~~~~~~~l~~~~~------d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~-~  188 (323)
                           ...+.+++++|+|+++++...      .+.|.   .++ + .....+.........++|+|+++.++.+.. + .
T Consensus       128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~---~~~-~-g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~  202 (326)
T 2ghs_A          128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIY---HVA-K-GKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR  202 (326)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEE---EEE-T-TEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEE---EEe-C-CcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence                 235889999999987665432      23444   666 4 344444333345778999999998776665 4 8


Q ss_pred             EEEEeCC--CC-e------eeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEc
Q psy11524        189 LRLCDKV--GW-S------HSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVN  258 (323)
Q Consensus       189 i~i~d~~--~~-~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  258 (323)
                      |.+||+.  +. .      ..........+..++++++|++.++...++ |..||. +++.+..  +......+.+++|+
T Consensus       203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~--i~~~~~~~~~~af~  279 (326)
T 2ghs_A          203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIAR--YEVPGKQTTCPAFI  279 (326)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEE--EECSCSBEEEEEEE
T ss_pred             EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEE--EECCCCCcEEEEEe
Confidence            9999974  32 1      111222345678899999998777666667 999997 5666665  33444578999998


Q ss_pred             -cCCCCccceEEEEeCCC
Q psy11524        259 -QTGSLQERHVAFIDKNR  275 (323)
Q Consensus       259 -p~g~~~d~~l~~~~~~~  275 (323)
                       |++    +.|.+....+
T Consensus       280 g~d~----~~L~vt~~~~  293 (326)
T 2ghs_A          280 GPDA----SRLLVTSARE  293 (326)
T ss_dssp             STTS----CEEEEEEBCT
T ss_pred             cCCC----CEEEEEecCC
Confidence             887    6776665544

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.44  E-value=4.7e-10  Score=94.36  Aligned_cols=238  Identities=11%  Similarity=0.010  Sum_probs=142.0

Q ss_pred             ccceeeecCCCCCEEEEEEcCCCCeEEEEee---------CCeEEEEeCCCCc--eeEeecc-------CCCeEEEEECC
Q psy11524         71 ALSLCRTLNVSPPVYSAAWSPDSNKVLLTQA---------KSLVIKPLSPNNK--ATKWQAH-------DGLILKVAWCS  132 (323)
Q Consensus        71 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---------~~~~v~~~~~~~~--~~~~~~~-------~~~v~~~~~~~  132 (323)
                      +.++...+.....- .++++|||++++++..         .++.|.++|....  ...+...       ......+.|+|
T Consensus        56 t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp  134 (373)
T 2mad_H           56 SGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP  134 (373)
T ss_pred             CCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC
Confidence            34444555433333 9999999999998863         2347888887653  2222211       12346899999


Q ss_pred             CCCEEEEEcC--CCceEeeeEEeCCCCeeeEe-ecCCCceeEEEEecCCCE-EEEEeCC-eEEEEeCCCCeeeecC----
Q psy11524        133 STDLILSGGE--DCKYKASFVWDTDGRQLYSS-LTHDHPISSLAWAPGGDM-FAVGSYN-TLRLCDKVGWSHSLDK----  203 (323)
Q Consensus       133 ~~~~l~~~~~--d~~i~~i~v~d~~~~~~~~~-~~~~~~v~~~~~~p~~~~-l~~~~~~-~i~i~d~~~~~~~~~~----  203 (323)
                      ||++|++++.  ++.|.   ++| ....+... .....   ++.+.|++.. +++.+.+ .+.++|..+.......    
T Consensus       135 DG~~l~v~n~~~~~~v~---viD-~t~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~  207 (373)
T 2mad_H          135 NNADLLFFQFAAGPAVG---LVV-QGGSSDDQLLSSPT---CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAM  207 (373)
T ss_pred             CCCEEEEEecCCCCeEE---EEE-CCCCEEeEEcCCCc---eEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEecccc
Confidence            9999998874  47788   999 75444332 22222   2455666543 4444444 8888998322221111    


Q ss_pred             -CCCcc-EEEEEEcCCCCEEEEEecCc-EEEEEcCCCce--eeeecCCC--------CccceEEEEEccCCCCccceEEE
Q psy11524        204 -PDTGS-VYDLVWSNDATQIAGACANV-IHIFDISSSSS--SNVTAPLS--------HSHEITQLAVNQTGSLQERHVAF  270 (323)
Q Consensus       204 -~~~~~-v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~--~~~~~~~~--------~~~~v~~~~~~p~g~~~d~~l~~  270 (323)
                       ....+ .....+.+++..++..+..+ +.+.|+..+..  +..+.+..        .......++++|++    +.+.+
T Consensus       208 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~----~~lyV  283 (373)
T 2mad_H          208 LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS----DGIYL  283 (373)
T ss_pred             ccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCC----CEEEE
Confidence             11122 23456677666555555677 99999876532  22210100        11224447889988    66666


Q ss_pred             EeC----------CCCeEEEecccc----cCCCCccceeEEEEeeCCC-eeEeee-cCCeEEEEEee
Q psy11524        271 IDK----------NRDLYLSMWSHS----LDKPDTGSVYDLVWSSDAT-QIAGAC-ANGSLLLGTII  321 (323)
Q Consensus       271 ~~~----------~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~-~l~s~~-~dg~i~~~~l~  321 (323)
                      ...          .+.+.+.+..+.    .... .....+++|+|||+ .|+++. .++.|.++|+.
T Consensus       284 ~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~  349 (373)
T 2mad_H          284 LTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             EeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence            543          234666666543    1122 34589999999999 777777 58999999874

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.43  E-value=1.4e-10  Score=96.03  Aligned_cols=202  Identities=11%  Similarity=-0.005  Sum_probs=130.8

Q ss_pred             cccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccC-----CCeEEEEECCCCCEEEEEc-
Q psy11524         70 QALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHD-----GLILKVAWCSSTDLILSGG-  141 (323)
Q Consensus        70 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~-----~~v~~~~~~~~~~~l~~~~-  141 (323)
                      .+.++...+........++++|++ .++++...++.|.++|..+.  ...+....     .....+++ .+++.+++.. 
T Consensus        72 ~t~~~~~~i~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~  149 (328)
T 3dsm_A           72 NTFKEVGRITGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWS  149 (328)
T ss_dssp             TTCCEEEEEECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECT
T ss_pred             cccEEEEEcCCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCC
Confidence            445666666667889999999998 55555534468999998765  22333222     14556777 3444444433 


Q ss_pred             CCCceEeeeEEeCCC-CeeeEeecCCCceeEEEEecCCCEEEEEeC-----------CeEEEEeCCCCeee-ecC-CCCc
Q psy11524        142 EDCKYKASFVWDTDG-RQLYSSLTHDHPISSLAWAPGGDMFAVGSY-----------NTLRLCDKVGWSHS-LDK-PDTG  207 (323)
Q Consensus       142 ~d~~i~~i~v~d~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-----------~~i~i~d~~~~~~~-~~~-~~~~  207 (323)
                      .++.|.   ++|+.. +....+.. ......++++|+|++++++..           +.|.++|..+..+. ... +...
T Consensus       150 ~~~~v~---viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~  225 (328)
T 3dsm_A          150 YQNRIL---KIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGD  225 (328)
T ss_dssp             TCCEEE---EEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTC
T ss_pred             CCCEEE---EEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCC
Confidence            488899   999974 44444443 345678999999987666543           37999998765443 222 2234


Q ss_pred             cEEEEEEcCCCCEEEEEecCcEEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEe-----CCCCeEEEec
Q psy11524        208 SVYDLVWSNDATQIAGACANVIHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFID-----KNRDLYLSMW  282 (323)
Q Consensus       208 ~v~~~~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~-----~~~~~~~~~~  282 (323)
                      .+..++++|++++|+++.. .|.+||..+++......+.........++++|++    +.|.+.+     .++.+.+|+.
T Consensus       226 ~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~----g~lyva~~~~y~~~~~V~v~d~  300 (328)
T 3dsm_A          226 WPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNN----GEVYVADAIDYQQQGIVYRYSP  300 (328)
T ss_dssp             CCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTT----CCEEEEECTTSSSEEEEEEECT
T ss_pred             CceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCC----CeEEEEcccccccCCEEEEECC
Confidence            6899999999998888654 5999999888764321012224578899999965    4555554     2344555544

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.37  E-value=2.8e-10  Score=93.27  Aligned_cols=221  Identities=9%  Similarity=-0.014  Sum_probs=136.4

Q ss_pred             eecccceeEeeEeccCCcceeeeeec-c---ccccccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCce
Q psy11524         40 IRRYDGTVINYPISPYISVLHSYAAS-H---SWPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKA  115 (323)
Q Consensus        40 ~~~~~~~v~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~  115 (323)
                      +...........|+|+++.+...... +   .|+.+.+......+...+..++++++|+.+++ ....+.|..++..+..
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~-~~~~~~v~~~~~~g~~  118 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHC-EHGRRAITRSDADGQA  118 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEE-ETTTTEEEEECTTSCE
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEE-ECCCCEEEEECCCCCE
Confidence            33344455678888888633221111 1   13333322222235677899999999986554 3333478888876554


Q ss_pred             eEeecc-----CCCeEEEEECCCCCEEEE----EcC-------------CCceEeeeEEeCCCCeeeEeecCCCceeEEE
Q psy11524        116 TKWQAH-----DGLILKVAWCSSTDLILS----GGE-------------DCKYKASFVWDTDGRQLYSSLTHDHPISSLA  173 (323)
Q Consensus       116 ~~~~~~-----~~~v~~~~~~~~~~~l~~----~~~-------------d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~  173 (323)
                      ..+..+     ...+.++++.|+|++.++    +..             .+.|.   .+|.++..+..+. .......++
T Consensus       119 ~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~---~~d~~~g~~~~~~-~~~~p~gl~  194 (305)
T 3dr2_A          119 HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVY---RLPPDGSPLQRMA-DLDHPNGLA  194 (305)
T ss_dssp             EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEE---EECSSSCCCEEEE-EESSEEEEE
T ss_pred             EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEE---EEcCCCCcEEEEe-cCCCCcceE
Confidence            443222     134678999999998876    332             23455   8887544444443 445678899


Q ss_pred             EecCCCEEEEEeC-------CeEEEEeCCCCee----eecCCCCccEEEEEEcCCCCEEEEEecCcEEEEEcCCCceeee
Q psy11524        174 WAPGGDMFAVGSY-------NTLRLCDKVGWSH----SLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISSSSSSNV  242 (323)
Q Consensus       174 ~~p~~~~l~~~~~-------~~i~i~d~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~  242 (323)
                      |+||++.|+++..       +.|+.||+.+..+    .........+..++++++|++ .+++.++|.+|+. .++.+..
T Consensus       195 ~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~gv~~~~~-~g~~~~~  272 (305)
T 3dr2_A          195 FSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGTGVCVFDS-DGQLLGH  272 (305)
T ss_dssp             ECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSSEEEEECT-TSCEEEE
T ss_pred             EcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCCcEEEECC-CCCEEEE
Confidence            9999997776654       3799999764321    111112344667899999984 4444444999997 5666665


Q ss_pred             ecCCCCccceEEEEEccCCCCccceEEEEeCC
Q psy11524        243 TAPLSHSHEITQLAVNQTGSLQERHVAFIDKN  274 (323)
Q Consensus       243 ~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~  274 (323)
                      +  .... .+.+++|+|++    +.|.+...+
T Consensus       273 ~--~~~~-~~~~~~f~~d~----~~L~it~~~  297 (305)
T 3dr2_A          273 I--PTPG-TASNCTFDQAQ----QRLFITGGP  297 (305)
T ss_dssp             E--ECSS-CCCEEEECTTS----CEEEEEETT
T ss_pred             E--ECCC-ceeEEEEeCCC----CEEEEEcCC
Confidence            3  2222 58889999887    677776654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.35  E-value=5.6e-11  Score=99.47  Aligned_cols=163  Identities=10%  Similarity=0.037  Sum_probs=116.0

Q ss_pred             eeEeeEeccCCcceeeeeeccc--cc-cc-----------cceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCC
Q psy11524         46 TVINYPISPYISVLHSYAASHS--WP-QA-----------LSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSP  111 (323)
Q Consensus        46 ~v~~~~~~~~~~~~~~~~~~~~--~~-~~-----------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~  111 (323)
                      +++.+++++....++....++.  |+ ..           .+......+.. |+.++|  |+++|+++ .+ +.|++|+.
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~-~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TR-NALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ES-SEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cC-CcEEEEEc
Confidence            5778889988755443332221  22 01           11112234566 999999  99999988 55 69999997


Q ss_pred             CCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeCC-e
Q psy11524        112 NNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-T  188 (323)
Q Consensus       112 ~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~  188 (323)
                      ...  ......|...+.++.+.+.  .++++..||.+.   +||+.......   +...|++++|||+|  ++.|..| .
T Consensus       114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~---v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~  183 (388)
T 1xip_A          114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLS---ALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRS  183 (388)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEE---EEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSC
T ss_pred             hhhhccCccceeecceeeEEecCC--CEEEEECCCCEE---EEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCc
Confidence            655  3446677888888888765  388899999999   99997444433   34579999999999  5566664 9


Q ss_pred             EEEEeCCCCee---eec------C---CCCccEEEEEEcCCCCEEEE
Q psy11524        189 LRLCDKVGWSH---SLD------K---PDTGSVYDLVWSNDATQIAG  223 (323)
Q Consensus       189 i~i~d~~~~~~---~~~------~---~~~~~v~~~~~~~~~~~l~~  223 (323)
                      +++|+..+...   ..+      .   +|...|.++.|.+++.++++
T Consensus       184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            99999876653   223      1   36788999999999998886

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.35  E-value=5.2e-10  Score=95.38  Aligned_cols=217  Identities=9%  Similarity=-0.037  Sum_probs=134.1

Q ss_pred             eeEeeEeccCCcceeeeeecc---ccccc-cceeeecCCCCCEEEEEEcCCCCeEEEEeeCCe-EEEEeCCCCc--eeEe
Q psy11524         46 TVINYPISPYISVLHSYAASH---SWPQA-LSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSL-VIKPLSPNNK--ATKW  118 (323)
Q Consensus        46 ~v~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~-~v~~~~~~~~--~~~~  118 (323)
                      ....++++|++..+..-...+   .|+.. ..+........... ++|+|+++.|+++..+.. .|+.++..+.  ...+
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~  210 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI  210 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEe
Confidence            456788888885222111001   13332 22222222233334 999999999888766443 7888887654  2233


Q ss_pred             ----eccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEe----e-cCCCce-e-EEEEecCCCEEEEEeC-
Q psy11524        119 ----QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSS----L-THDHPI-S-SLAWAPGGDMFAVGSY-  186 (323)
Q Consensus       119 ----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~----~-~~~~~v-~-~~~~~p~~~~l~~~~~-  186 (323)
                          ......+.+++++|++..|+.+..++.|.   .||.++.....+    . +....- . .++|+|++..|+.+.. 
T Consensus       211 g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~---~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~  287 (409)
T 3hrp_A          211 GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFG---RFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN  287 (409)
T ss_dssp             EECCTTSCSCCCBCEECTTSSEEEEECTTCEEE---EEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred             eeccchhcCCcEEEEEeCCCCeEEEEECCCcEE---EEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence                21456678899999555555577788888   999975544443    1 111111 3 9999996555555555 


Q ss_pred             C-eEEEEeCCCCeeeecCCC---------------CccEEEEEEcCCCCEEEEEe-cCc-EEEEEcCCCceeeeecCCCC
Q psy11524        187 N-TLRLCDKVGWSHSLDKPD---------------TGSVYDLVWSNDATQIAGAC-ANV-IHIFDISSSSSSNVTAPLSH  248 (323)
Q Consensus       187 ~-~i~i~d~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~  248 (323)
                      + .|+.|+..+...... ++               -.....++++|+|+++++-. .++ |+.||+.+++....   .++
T Consensus       288 ~~~I~~~~~~g~~~~~~-g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~---~g~  363 (409)
T 3hrp_A          288 LSSVYKITPDGECEWFC-GSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTV---AGQ  363 (409)
T ss_dssp             TTEEEEECTTCCEEEEE-ECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEE---EEC
T ss_pred             CCEEEEEecCCCEEEEE-eCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEE---eCC
Confidence            4 999999876532221 11               13478999999999666666 667 99999877764432   221


Q ss_pred             ---------------ccceEEEEEccCCCCccceEEEEeCCC
Q psy11524        249 ---------------SHEITQLAVNQTGSLQERHVAFIDKNR  275 (323)
Q Consensus       249 ---------------~~~v~~~~~~p~g~~~d~~l~~~~~~~  275 (323)
                                     -.....++++|++     .|.+.+..+
T Consensus       364 ~~~~g~~~g~~~~~~~~~P~giavd~~g-----~lyVad~~n  400 (409)
T 3hrp_A          364 VDVASQIDGTPLEATFNYPYDICYDGEG-----GYWIAEAWG  400 (409)
T ss_dssp             TTCBSCCCBSTTTCCBSSEEEEEECSSS-----EEEEEESTT
T ss_pred             CCCCCcCCCChhceEeCCceEEEEcCCC-----CEEEEECCC
Confidence                           2357889999985     566666543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.35  E-value=1.3e-10  Score=106.08  Aligned_cols=211  Identities=9%  Similarity=0.013  Sum_probs=130.8

Q ss_pred             cccceeEeeEeccCCcceeeeeec-cccccccceeeecC------CCCC--EEEEEEcCCCCeEEEEeeCC---------
Q psy11524         42 RYDGTVINYPISPYISVLHSYAAS-HSWPQALSLCRTLN------VSPP--VYSAAWSPDSNKVLLTQAKS---------  103 (323)
Q Consensus        42 ~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~--v~~~~~sp~~~~l~~~~~~~---------  103 (323)
                      ++...+..+.|||||+.++..... |+...++.++..-.      +...  ...++|+ ||+.|+++..+.         
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            455678889999999877654433 33222222221110      1112  2567899 999999987663         


Q ss_pred             ---eEEEEeCCCCce----eEe--ec-cCCCeEEEEECCCCCEEEEEcC-C---CceEeeeEEeCCCC--eeeEeecCCC
Q psy11524        104 ---LVIKPLSPNNKA----TKW--QA-HDGLILKVAWCSSTDLILSGGE-D---CKYKASFVWDTDGR--QLYSSLTHDH  167 (323)
Q Consensus       104 ---~~v~~~~~~~~~----~~~--~~-~~~~v~~~~~~~~~~~l~~~~~-d---~~i~~i~v~d~~~~--~~~~~~~~~~  167 (323)
                         ..|++|++.+..    ..+  .. |......+.|+|||++|+.... +   ..+.   ++|+++.  ....+..+..
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~---~~d~~~~~~~~~~l~~~~~  281 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLY---VKDLSQENAPLLTVQGDLD  281 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEE---EEETTSTTCCCEEEECSSS
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEE---EEECCCCCCceEEEeCCCC
Confidence               258888876541    222  22 3445788999999998765443 2   3455   9998643  5566666665


Q ss_pred             ceeEEEEecCCCEEEEEeC----C-eEEEEeCCCCee---eecCCCCccEEEEEEcCCCCEEEEEec-Cc---EEEEEcC
Q psy11524        168 PISSLAWAPGGDMFAVGSY----N-TLRLCDKVGWSH---SLDKPDTGSVYDLVWSNDATQIAGACA-NV---IHIFDIS  235 (323)
Q Consensus       168 ~v~~~~~~p~~~~l~~~~~----~-~i~i~d~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~---i~iwd~~  235 (323)
                      ..... |+++|..|+..+.    . .|..+|+.+...   ..+..+...+.  .|++++++|+.... ++   |++||+.
T Consensus       282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred             ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence            55555 6777776665553    2 688999875432   33444555554  89999988776654 43   8899987


Q ss_pred             CCceeeeecCCCCccceEEEEEccCC
Q psy11524        236 SSSSSNVTAPLSHSHEITQLAVNQTG  261 (323)
Q Consensus       236 ~~~~~~~~~~~~~~~~v~~~~~~p~g  261 (323)
                      .+. ...+ .......+..+.++|++
T Consensus       359 g~~-~~~l-~~p~~~~~~~~~~~~d~  382 (693)
T 3iuj_A          359 GKR-VREV-ALPGLGSVSGFNGKHDD  382 (693)
T ss_dssp             SCE-EEEE-CCSSSSEEEECCCCTTC
T ss_pred             CCe-eEEe-ecCCCceEEeeecCCCC
Confidence            544 3332 22344567777788887

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.32  E-value=2.1e-09  Score=89.69  Aligned_cols=238  Identities=10%  Similarity=0.009  Sum_probs=136.6

Q ss_pred             ccceeeecCCCCCEEEEEEcCCCCeEEEEee---------CCeEEEEeCCCCc--eeEeecc-------CCCeEEEEECC
Q psy11524         71 ALSLCRTLNVSPPVYSAAWSPDSNKVLLTQA---------KSLVIKPLSPNNK--ATKWQAH-------DGLILKVAWCS  132 (323)
Q Consensus        71 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---------~~~~v~~~~~~~~--~~~~~~~-------~~~v~~~~~~~  132 (323)
                      +.++...+....... ++++|||++++++..         ..+.|.+||..+.  ...+.-.       ......++|+|
T Consensus        68 t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp  146 (386)
T 3sjl_D           68 AGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP  146 (386)
T ss_dssp             TTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT
T ss_pred             CCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC
Confidence            344455554333234 999999999988762         2357999998776  3333221       12456789999


Q ss_pred             CCCEEEEEcC--CCceEeeeEEeCCC-CeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCC-Cee-e----ec
Q psy11524        133 STDLILSGGE--DCKYKASFVWDTDG-RQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVG-WSH-S----LD  202 (323)
Q Consensus       133 ~~~~l~~~~~--d~~i~~i~v~d~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~-~~~-~----~~  202 (323)
                      ||++++++..  ++.|.   ++|+.. +.+..+.. .+ . ...+....+.+++.+.| .+.+.++.. ..+ .    .+
T Consensus       147 DGk~lyVan~~~~~~Vs---VID~~t~~vv~tI~v-~g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~  220 (386)
T 3sjl_D          147 DGKTLLFYQFSPAPAVG---VVDLEGKAFKRMLDV-PD-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF  220 (386)
T ss_dssp             TSSEEEEEECSSSCEEE---EEETTTTEEEEEEEC-CS-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCC
T ss_pred             CCCEEEEEEcCCCCeEE---EEECCCCcEEEEEEC-CC-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeeccee
Confidence            9999888864  68899   999964 44445532 22 1 12232234455555553 666667643 221 1    11


Q ss_pred             CCCCccEE-EEEEc-CCCCEEEEEecCc-EEEEEcCCCce--eeeecCCC--------CccceEEEEEccCCCCccceEE
Q psy11524        203 KPDTGSVY-DLVWS-NDATQIAGACANV-IHIFDISSSSS--SNVTAPLS--------HSHEITQLAVNQTGSLQERHVA  269 (323)
Q Consensus       203 ~~~~~~v~-~~~~~-~~~~~l~~~~~d~-i~iwd~~~~~~--~~~~~~~~--------~~~~v~~~~~~p~g~~~d~~l~  269 (323)
                      .....++. ...|. ++|++++ .+.++ +++.|..++..  ...+.+..        .......++++|++    +.+.
T Consensus       221 ~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~----~~ly  295 (386)
T 3sjl_D          221 HPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL----DRIY  295 (386)
T ss_dssp             SCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT----TEEE
T ss_pred             ccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCC----CeEE
Confidence            11112222 24664 6886554 55678 99999876542  22211000        11233346778887    5555


Q ss_pred             EEeCC----------CCeEEEecccc----cCCCCccceeEEEEeeCCC-eeEee-ecCCeEEEEEee
Q psy11524        270 FIDKN----------RDLYLSMWSHS----LDKPDTGSVYDLVWSSDAT-QIAGA-CANGSLLLGTII  321 (323)
Q Consensus       270 ~~~~~----------~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~-~l~s~-~~dg~i~~~~l~  321 (323)
                      +...+          +.+.+.+..+.    .... +..+++++++||++ +|++. ..++.|.++|..
T Consensus       296 V~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~  362 (386)
T 3sjl_D          296 LLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE  362 (386)
T ss_dssp             EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred             EEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence            54321          22444444432    0111 45788999999997 66664 458999999863

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.31  E-value=2.9e-10  Score=94.87  Aligned_cols=224  Identities=11%  Similarity=0.100  Sum_probs=139.0

Q ss_pred             eeEeccCCcceeeeee----------c---cccc-cccceeeecCC--------CCCEEEEEEcCCCCeEEEEeeC-CeE
Q psy11524         49 NYPISPYISVLHSYAA----------S---HSWP-QALSLCRTLNV--------SPPVYSAAWSPDSNKVLLTQAK-SLV  105 (323)
Q Consensus        49 ~~~~~~~~~~~~~~~~----------~---~~~~-~~~~~~~~~~~--------~~~v~~~~~sp~~~~l~~~~~~-~~~  105 (323)
                      .+.++|||+.++....          +   ..|| .+.+....+.-        ......++|+|||++++++... .+.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            4899999987764431          1   1244 34444444421        2356679999999999988653 468


Q ss_pred             EEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC--CCeeeEeec----CCCcee-EEEEe-
Q psy11524        106 IKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD--GRQLYSSLT----HDHPIS-SLAWA-  175 (323)
Q Consensus       106 v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~--~~~~~~~~~----~~~~v~-~~~~~-  175 (323)
                      |.++|....  ..++.. .+ . ...+....+.+++.+.||++.   +.++.  ++.......    ...++. ...|. 
T Consensus       162 VsVID~~t~~vv~tI~v-~g-~-~~~~P~g~~~~~~~~~DG~~~---~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~  235 (386)
T 3sjl_D          162 VGVVDLEGKAFKRMLDV-PD-C-YHIFPTAPDTFFMHCRDGSLA---KVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ  235 (386)
T ss_dssp             EEEEETTTTEEEEEEEC-CS-E-EEEEEEETTEEEEEETTSCEE---EEECCSSSCCEEEECCCCSCTTSCBCSCCEEET
T ss_pred             EEEEECCCCcEEEEEEC-CC-c-ceeecCCCceeEEECCCCCEE---EEECCCCCeEEEeecceeccccccccccceeEc
Confidence            999998876  334422 11 1 222333445677778888888   88874  232211111    112222 24665 


Q ss_pred             cCCCEEEEEeCCeEEEEeCCCCeeeecCCC-------------CccEEEEEEcCCCCEEEEEec----------Cc-EEE
Q psy11524        176 PGGDMFAVGSYNTLRLCDKVGWSHSLDKPD-------------TGSVYDLVWSNDATQIAGACA----------NV-IHI  231 (323)
Q Consensus       176 p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~~----------d~-i~i  231 (323)
                      ++|++++....+++++.|..+.........             .+....++++|+++.++....          .+ |.+
T Consensus       236 ~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~v  315 (386)
T 3sjl_D          236 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV  315 (386)
T ss_dssp             TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             CCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEE
Confidence            677655544446999999876533222111             223345788999998887653          24 999


Q ss_pred             EEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeC-CCCeEEEeccc
Q psy11524        232 FDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDK-NRDLYLSMWSH  284 (323)
Q Consensus       232 wd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~-~~~~~~~~~~~  284 (323)
                      +|..+++.+..+  . -...+..++++|+++   ..+.+.+. ++.+.+++..+
T Consensus       316 iD~~t~kv~~~i--~-vg~~~~~lavs~D~~---~~ly~tn~~~~~VsViD~~t  363 (386)
T 3sjl_D          316 LDAKTGERLAKF--E-MGHEIDSINVSQDEK---PLLYALSTGDKTLYIHDAES  363 (386)
T ss_dssp             EETTTCCEEEEE--E-EEEEECEEEECSSSS---CEEEEEETTTTEEEEEETTT
T ss_pred             EECCCCeEEEEE--E-CCCCcceEEECCCCC---eEEEEEcCCCCeEEEEECCC
Confidence            999999999874  2 234788999999982   25666554 66788888766

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.29  E-value=8.4e-10  Score=93.65  Aligned_cols=239  Identities=9%  Similarity=-0.018  Sum_probs=142.7

Q ss_pred             cccceeeecCCCCCEEEEEEcCCCCeEEEEee---------CCeEEEEeCCCCc--eeEeecc-------CCCeEEEEEC
Q psy11524         70 QALSLCRTLNVSPPVYSAAWSPDSNKVLLTQA---------KSLVIKPLSPNNK--ATKWQAH-------DGLILKVAWC  131 (323)
Q Consensus        70 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---------~~~~v~~~~~~~~--~~~~~~~-------~~~v~~~~~~  131 (323)
                      .+.++...+.-...- .++++|||++++++..         ..+.|.++|....  ...+.-.       ......+.|+
T Consensus       107 ~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~s  185 (426)
T 3c75_H          107 STGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALT  185 (426)
T ss_dssp             TTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEEC
T ss_pred             CCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEc
Confidence            344455555433333 8999999999998863         3458999998765  3333211       1234578999


Q ss_pred             CCCCEEEEEcC--CCceEeeeEEeCCC-CeeeEeecCCCceeEEEEecCC-CEEEEEeC-CeEEEEeCCCCeee-----e
Q psy11524        132 SSTDLILSGGE--DCKYKASFVWDTDG-RQLYSSLTHDHPISSLAWAPGG-DMFAVGSY-NTLRLCDKVGWSHS-----L  201 (323)
Q Consensus       132 ~~~~~l~~~~~--d~~i~~i~v~d~~~-~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~-~~i~i~d~~~~~~~-----~  201 (323)
                      |||++++++..  ++.|.   +.|+.. +.+..+... +.   ....|++ +.+++.+. +.+.+.+.......     .
T Consensus       186 pDGk~lyV~n~~~~~~Vs---VID~~t~kvv~~I~v~-g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~  258 (426)
T 3c75_H          186 PDNKNLLFYQFSPAPAVG---VVDLEGKTFDRMLDVP-DC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEV  258 (426)
T ss_dssp             TTSSEEEEEECSSSCEEE---EEETTTTEEEEEEECC-SE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCC
T ss_pred             CCCCEEEEEecCCCCeEE---EEECCCCeEEEEEEcC-Cc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeee
Confidence            99999998874  57899   999964 444454432 11   2233332 33333444 35555565322221     1


Q ss_pred             cCCCCcc-EEEEEEcCCCCEEEEEecCc-EEEEEcCCCceee--eecCCC--------CccceEEEEEccCCCCccceEE
Q psy11524        202 DKPDTGS-VYDLVWSNDATQIAGACANV-IHIFDISSSSSSN--VTAPLS--------HSHEITQLAVNQTGSLQERHVA  269 (323)
Q Consensus       202 ~~~~~~~-v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~--~~~~~~--------~~~~v~~~~~~p~g~~~d~~l~  269 (323)
                      +.....+ ...+.+.+++..++..+..+ +.+.|...+....  .+.+..        .......++++|++    +.+.
T Consensus       259 ~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg----~rly  334 (426)
T 3c75_H          259 FHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS----DRIY  334 (426)
T ss_dssp             CSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG----TEEE
T ss_pred             eccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC----CEEE
Confidence            1111112 12457899988888878888 9999987654221  100110        01112236889998    6666


Q ss_pred             EEeC----------CCCeEEEecccc----cCCCCccceeEEEEeeCCC-eeEeee-cCCeEEEEEee
Q psy11524        270 FIDK----------NRDLYLSMWSHS----LDKPDTGSVYDLVWSSDAT-QIAGAC-ANGSLLLGTII  321 (323)
Q Consensus       270 ~~~~----------~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~-~l~s~~-~dg~i~~~~l~  321 (323)
                      +.+.          .+.+.+.+..+.    .... +....+++|+|||+ +|++.. .++.|.++|+.
T Consensus       335 Va~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~  401 (426)
T 3c75_H          335 LLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAA  401 (426)
T ss_dssp             EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             EEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence            6543          124556665543    1111 34588999999999 888887 59999999864

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.27  E-value=8.9e-09  Score=86.59  Aligned_cols=222  Identities=11%  Similarity=0.047  Sum_probs=138.1

Q ss_pred             eeEeccCCcceeeeee----------cc---ccc-cccceeeecCC--------CCCEEEEEEcCCCCeEEEEeeC-CeE
Q psy11524         49 NYPISPYISVLHSYAA----------SH---SWP-QALSLCRTLNV--------SPPVYSAAWSPDSNKVLLTQAK-SLV  105 (323)
Q Consensus        49 ~~~~~~~~~~~~~~~~----------~~---~~~-~~~~~~~~~~~--------~~~v~~~~~sp~~~~l~~~~~~-~~~  105 (323)
                      .+.++|||+.++....          ++   .+| .+.+....+.-        ......+.|+|||++|+++... ...
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            8999999987764421          11   123 23344333321        1345689999999999988753 457


Q ss_pred             EEEeCCCCc--eeEeeccCCCeEEEEECCCC-CEEEEEcCCCceEeeeEEeCCCCeeeEee-----cCCCc-eeEEEEec
Q psy11524        106 IKPLSPNNK--ATKWQAHDGLILKVAWCSST-DLILSGGEDCKYKASFVWDTDGRQLYSSL-----THDHP-ISSLAWAP  176 (323)
Q Consensus       106 v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~i~v~d~~~~~~~~~~-----~~~~~-v~~~~~~p  176 (323)
                      |.++| .+.  ...+....+   ++.+.|++ +.+++.+.||++.   +++.+++......     ....+ .....+.+
T Consensus       150 v~viD-~t~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~dg~~~---~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~  222 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSPT---CYHIHPGAPSTFYLLCAQGGLA---KTDHAGGAAGAGLVGAMLTAAQNLLTQPAQAN  222 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCCc---eEEEEeCCCceEEEEcCCCCEE---EEECCCcEEEEEeccccccCCcceeecceeEe
Confidence            88888 655  222022222   24455655 4566777899999   8988443332221     11122 23356677


Q ss_pred             CCCEEEEEeC-CeEEEEeCCCCeeeecCC-------------CCccEEEEEEcCCCCEEEEEec----------Cc-EEE
Q psy11524        177 GGDMFAVGSY-NTLRLCDKVGWSHSLDKP-------------DTGSVYDLVWSNDATQIAGACA----------NV-IHI  231 (323)
Q Consensus       177 ~~~~l~~~~~-~~i~i~d~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~----------d~-i~i  231 (323)
                      ++..++..+. +.+.+.|+.+........             .......+.++|+++.+++...          .+ |.+
T Consensus       223 ~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V  302 (373)
T 2mad_H          223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS  302 (373)
T ss_pred             cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEE
Confidence            6655444445 589999986432111100             1223445789999998877653          35 999


Q ss_pred             EEcCCCceeeeecCCCCccceEEEEEccCCCCccc-eEEEEe-CCCCeEEEeccc
Q psy11524        232 FDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQER-HVAFID-KNRDLYLSMWSH  284 (323)
Q Consensus       232 wd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~-~l~~~~-~~~~~~~~~~~~  284 (323)
                      +|..+++.+.++  . .......++|+|||    + .+.+.+ .++.+.+++..+
T Consensus       303 ID~~t~~vv~~i--~-~g~~p~~i~~s~Dg----~~~l~v~~~~~~~V~ViD~~t  350 (373)
T 2mad_H          303 VTGLVGQTSSQI--S-LGHDVDAISVAQDG----GPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             EECCCCEEEEEE--E-CCCCcCeEEECCCC----CeEEEEEcCCCCeEEEEECCC
Confidence            999999998874  2 23367899999998    6 677766 478888888876

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.25  E-value=3.5e-09  Score=88.19  Aligned_cols=223  Identities=10%  Similarity=0.011  Sum_probs=130.6

Q ss_pred             CCEEEEEEcCCCCeEEEEee-CCe--EEEEeCCCCceeEee-------ccCCCeEEEEECCCCCEEEEEcC-----CCce
Q psy11524         82 PPVYSAAWSPDSNKVLLTQA-KSL--VIKPLSPNNKATKWQ-------AHDGLILKVAWCSSTDLILSGGE-----DCKY  146 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~-~~~--~v~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~-----d~~i  146 (323)
                      ..+..++++|+|+.+++... ..+  .|...+ .+.+..+.       .+-..+..++++++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            67889999999988776532 112  444444 33333221       24467899999999876665433     4678


Q ss_pred             EeeeEEeCC-CCeeeEeecC------CCceeEEEEecCCCEE-EEEe---C-CeEEEEeCCCC-eeeecCCC--------
Q psy11524        147 KASFVWDTD-GRQLYSSLTH------DHPISSLAWAPGGDMF-AVGS---Y-NTLRLCDKVGW-SHSLDKPD--------  205 (323)
Q Consensus       147 ~~i~v~d~~-~~~~~~~~~~------~~~v~~~~~~p~~~~l-~~~~---~-~~i~i~d~~~~-~~~~~~~~--------  205 (323)
                      .   +||+. ++.+..+...      ...+..++++|++..+ ++..   . +.|.+||+.+. .......|        
T Consensus        96 ~---~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~  172 (343)
T 2qe8_A           96 V---AWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI  172 (343)
T ss_dssp             E---EEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred             E---EEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence            8   99996 4445554321      2356899999865454 4443   3 38999998643 33322221        


Q ss_pred             ---------------------CccEEEEEEcCCCCEEEEEecCc--EEEEEcC---CCc-----eeeeecCCCCccceEE
Q psy11524        206 ---------------------TGSVYDLVWSNDATQIAGACANV--IHIFDIS---SSS-----SSNVTAPLSHSHEITQ  254 (323)
Q Consensus       206 ---------------------~~~v~~~~~~~~~~~l~~~~~d~--i~iwd~~---~~~-----~~~~~~~~~~~~~v~~  254 (323)
                                           ...+..++|+|+|+.|+.+...+  +..++..   .+.     ....+...++......
T Consensus       173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg  252 (343)
T 2qe8_A          173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG  252 (343)
T ss_dssp             CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred             ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence                                 02368899999999888887665  6666532   111     0000001112234556


Q ss_pred             EEEccCCC-----CccceEEEEeC-CCCeEEEecccccCCCCccceeEEEEeeCCCeeEeeecCC
Q psy11524        255 LAVNQTGS-----LQERHVAFIDK-NRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANG  313 (323)
Q Consensus       255 ~~~~p~g~-----~~d~~l~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg  313 (323)
                      ++++++|.     ..++.|..|+. ++......     ...+...+.+++|.++|+++++.+..+
T Consensus       253 ia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~-----~~~~~~~p~~va~~~~g~l~v~~~~~~  312 (343)
T 2qe8_A          253 ISIDKDHNIYVGDLAHSAIGVITSADRAYKLLV-----TDEKLSWTDSFNFGSDGYLYFDCNQLH  312 (343)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEEETTTTEEEEEE-----ECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred             EEECCCCCEEEEccCCCeEEEEECCCCCEEEEE-----ECCceecCCeeEECCCCcEEEEeCccc
Confidence            88888874     23344555554 33321110     000145688999999998777766443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.22  E-value=1.4e-08  Score=85.52  Aligned_cols=215  Identities=9%  Similarity=-0.023  Sum_probs=134.5

Q ss_pred             EEc--CCCCeEEEEeeCCeEEEEeCCCCc------eeEee------c-cCCCeEEEEECCCCCEEEEEcCC------Cce
Q psy11524         88 AWS--PDSNKVLLTQAKSLVIKPLSPNNK------ATKWQ------A-HDGLILKVAWCSSTDLILSGGED------CKY  146 (323)
Q Consensus        88 ~~s--p~~~~l~~~~~~~~~v~~~~~~~~------~~~~~------~-~~~~v~~~~~~~~~~~l~~~~~d------~~i  146 (323)
                      .++  +++++|++.+.....|+++|....      ...+.      . .......+..+|+| .++++..+      +.+
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI  166 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence            346  899999998887789999997532      22231      1 11245677889999 66666555      678


Q ss_pred             EeeeEEeCC-CCeeeEeecCC---CceeEEEEecCCCEEEEEe-------------------C-CeEEEEeCCCCeee-e
Q psy11524        147 KASFVWDTD-GRQLYSSLTHD---HPISSLAWAPGGDMFAVGS-------------------Y-NTLRLCDKVGWSHS-L  201 (323)
Q Consensus       147 ~~i~v~d~~-~~~~~~~~~~~---~~v~~~~~~p~~~~l~~~~-------------------~-~~i~i~d~~~~~~~-~  201 (323)
                      .   ++|.+ .+.+..+....   .--..+.|+|+++.+++..                   . ++|.+||+.+.++. .
T Consensus       167 ~---vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t  243 (462)
T 2ece_A          167 L---MLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS  243 (462)
T ss_dssp             E---EECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred             E---EEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence            8   99986 56666665322   2244688999999888885                   2 59999998865332 2


Q ss_pred             cCC--CCccEEEEEE--cCCCCEEEEEec-----C-c-EEEEEcCCCceee--eecCCC----------------Cccce
Q psy11524        202 DKP--DTGSVYDLVW--SNDATQIAGACA-----N-V-IHIFDISSSSSSN--VTAPLS----------------HSHEI  252 (323)
Q Consensus       202 ~~~--~~~~v~~~~~--~~~~~~l~~~~~-----d-~-i~iwd~~~~~~~~--~~~~~~----------------~~~~v  252 (323)
                      +..  .......+.|  +|+++++++++.     . + |.+|....++...  .+.+..                .....
T Consensus       244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p  323 (462)
T 2ece_A          244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV  323 (462)
T ss_dssp             EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred             EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence            221  2234566666  999999888876     4 4 7766554442111  100000                02346


Q ss_pred             EEEEEccCCCCccceEEEEeC-CCCeEEEecccc--------cCCC-------C------ccceeEEEEeeCCCeeEeee
Q psy11524        253 TQLAVNQTGSLQERHVAFIDK-NRDLYLSMWSHS--------LDKP-------D------TGSVYDLVWSSDATQIAGAC  310 (323)
Q Consensus       253 ~~~~~~p~g~~~d~~l~~~~~-~~~~~~~~~~~~--------~~~~-------~------~~~v~~~~~s~~g~~l~s~~  310 (323)
                      ..+.+||||    +.|.+.+. .+.+.++++...        +..+       |      .+.-..++++|||++|+++.
T Consensus       324 a~I~lS~DG----rfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          324 TDIDISLDD----KFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCEEECTTS----CEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             eEEEECCCC----CEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            789999999    56655543 234555554311        0000       0      11358899999999999887

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.12  E-value=2.1e-08  Score=83.49  Aligned_cols=188  Identities=10%  Similarity=0.008  Sum_probs=123.8

Q ss_pred             CCeEEEEECCCCCEEEEEc--CCCceEeeeEEeCCCCeeeEee-------cCCCceeEEEEecCCCEEEEEeC------C
Q psy11524        123 GLILKVAWCSSTDLILSGG--EDCKYKASFVWDTDGRQLYSSL-------THDHPISSLAWAPGGDMFAVGSY------N  187 (323)
Q Consensus       123 ~~v~~~~~~~~~~~l~~~~--~d~~i~~i~v~d~~~~~~~~~~-------~~~~~v~~~~~~p~~~~l~~~~~------~  187 (323)
                      ..+..++++|+|+.+++..  .++.++   +|.++...+..+.       .+...+..++++|+|+++++...      .
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~---l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQ---VAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCS---EEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceE---EEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence            6788999999999888864  234345   5555333333221       23457899999999886665432      4


Q ss_pred             eEEEEeCCCCe-eeecC------CCCccEEEEEEcCCCCEE-EEEe---cCc-EEEEEcCCCceeeeecCCCC-------
Q psy11524        188 TLRLCDKVGWS-HSLDK------PDTGSVYDLVWSNDATQI-AGAC---ANV-IHIFDISSSSSSNVTAPLSH-------  248 (323)
Q Consensus       188 ~i~i~d~~~~~-~~~~~------~~~~~v~~~~~~~~~~~l-~~~~---~d~-i~iwd~~~~~~~~~~~~~~~-------  248 (323)
                      .|.+||+.+.. ...+.      .+...+..++++|++..+ ++..   .++ |.+||..+++....  +..|       
T Consensus        94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~--~~~~~~~~~~~  171 (343)
T 2qe8_A           94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARV--LQGYPGIAPED  171 (343)
T ss_dssp             EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEE--CTTCTTTSCCS
T ss_pred             eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEE--ecCCCcccccc
Confidence            89999987543 33221      122456899999865454 4444   456 99999988876554  2221       


Q ss_pred             ----------------------ccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-c-----------C--C--CC
Q psy11524        249 ----------------------SHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-L-----------D--K--PD  290 (323)
Q Consensus       249 ----------------------~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-~-----------~--~--~~  290 (323)
                                            ...+..++|+|++    +.+.+.+..+. .+|.+... .           .  .  .+
T Consensus       172 ~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg----~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~  246 (343)
T 2qe8_A          172 IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN----EWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSE  246 (343)
T ss_dssp             CCCEETTEECBEECTTSCEECCCCCEEEEEECTTS----CEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEE
T ss_pred             cceeECCEEEEeccCCCceeceecccceeEeccCC----CEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEeccc
Confidence                                  0235789999998    78888887664 44444321 0           0  0  11


Q ss_pred             ccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        291 TGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       291 ~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      ......++++++|+++++...++.|.+|+.
T Consensus       247 ~g~pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          247 KPICDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             CCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             CCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence            234568999999999999989999999985

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.12  E-value=2e-07  Score=74.59  Aligned_cols=173  Identities=6%  Similarity=-0.108  Sum_probs=116.7

Q ss_pred             CCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeec-cCCCeEEEEECCCCCEEEEEcC---CCceEeeeEEeCCC
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQA-HDGLILKVAWCSSTDLILSGGE---DCKYKASFVWDTDG  156 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---d~~i~~i~v~d~~~  156 (323)
                      .....++++|++..|+++....+.|..++..+. ...+.. .......++++|++..|+.+..   .+.|.   .+++++
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~---~~~~dg  155 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIE---TSHMDG  155 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEE---EEETTS
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEE---EEecCC
Confidence            578999999988888877766668888887665 222322 2256789999997666555543   36777   888876


Q ss_pred             CeeeEee-cCCCceeEEEEecCCCEEEEEeC-C-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEec-Cc-EEE
Q psy11524        157 RQLYSSL-THDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACA-NV-IHI  231 (323)
Q Consensus       157 ~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~-i~i  231 (323)
                      .....+. ........++++|++..|+.+.. . .|..+|..+...............++..  +..|+.+.. .+ |..
T Consensus       156 ~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~  233 (267)
T 1npe_A          156 TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIA  233 (267)
T ss_dssp             CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred             CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEE
Confidence            5544443 23346789999998888777776 3 9999998865333222222345666654  455665554 45 999


Q ss_pred             EEcCCCceeeeecCCCCc-cceEEEEEccCC
Q psy11524        232 FDISSSSSSNVTAPLSHS-HEITQLAVNQTG  261 (323)
Q Consensus       232 wd~~~~~~~~~~~~~~~~-~~v~~~~~~p~g  261 (323)
                      +|..+++.+.++  .... .....+++.|++
T Consensus       234 ~d~~~g~~~~~i--~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          234 MDLAISKEMDTF--HPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             EETTTTEEEEEE--CCSSCCCCCCEEEECSC
T ss_pred             EeCCCCCceEEE--ccccccccceeeecCcc
Confidence            999999888773  3222 246778888875

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.11  E-value=6e-09  Score=86.95  Aligned_cols=232  Identities=10%  Similarity=-0.028  Sum_probs=136.7

Q ss_pred             ccceeeecCC-CCCEEEEEEcCCCCeEEEEee---------CCeEEEEeCCCCc--eeEeecc-------CCCeEEEEEC
Q psy11524         71 ALSLCRTLNV-SPPVYSAAWSPDSNKVLLTQA---------KSLVIKPLSPNNK--ATKWQAH-------DGLILKVAWC  131 (323)
Q Consensus        71 ~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~---------~~~~v~~~~~~~~--~~~~~~~-------~~~v~~~~~~  131 (323)
                      +.++...+.- ..+  .+.++|||++++++..         .++.|.++|....  ..++...       ......++++
T Consensus        55 t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~S  132 (368)
T 1mda_H           55 CGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC  132 (368)
T ss_dssp             TTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC
T ss_pred             CCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEc
Confidence            4455555542 334  7999999999998862         3468999998876  4444322       1235688999


Q ss_pred             CCCCEEEEEcC--CCceEeeeE--EeCCCCeeeEeecCCCceeEEEEecCCCE-EEEEeCC-eEEEEeCCC-----Ceee
Q psy11524        132 SSTDLILSGGE--DCKYKASFV--WDTDGRQLYSSLTHDHPISSLAWAPGGDM-FAVGSYN-TLRLCDKVG-----WSHS  200 (323)
Q Consensus       132 ~~~~~l~~~~~--d~~i~~i~v--~d~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~~~~~~-~i~i~d~~~-----~~~~  200 (323)
                      |||++++++..  +..+.   +  +|+..  +..+... +.   ..+.|+++. +++.+.+ .+.+.|+..     ....
T Consensus       133 pDGk~lyVan~~~~~~v~---V~~iD~~t--v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~  203 (368)
T 1mda_H          133 ASSACLLFFLFGSSAAAG---LSVPGASD--DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG  203 (368)
T ss_dssp             TTSSCEEEEECSSSCEEE---EEETTTEE--EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred             CCCCEEEEEccCCCCeEE---EEEEchhh--ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEE
Confidence            99999998875  45687   8  88865  4444321 11   223455443 3333333 677778765     2221


Q ss_pred             e-----cCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCc--eeeeecCCC-----C---ccceEEEEEccCCCCc
Q psy11524        201 L-----DKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSS--SSNVTAPLS-----H---SHEITQLAVNQTGSLQ  264 (323)
Q Consensus       201 ~-----~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~--~~~~~~~~~-----~---~~~v~~~~~~p~g~~~  264 (323)
                      .     ......+.   . ++++..++..+. + +.+.|..++.  .+..+.+..     +   ......++++|++   
T Consensus       204 ~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg---  275 (368)
T 1mda_H          204 AQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT---  275 (368)
T ss_dssp             CCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT---
T ss_pred             EEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCC---
Confidence            1     11112233   3 666666666666 8 9999986543  222211111     0   1112226899998   


Q ss_pred             cceEEEEeC-C--------CCeEEEecccc--cCCCC-ccceeEEEEeeCCCe-eEeee-cCCeEEEEEeec
Q psy11524        265 ERHVAFIDK-N--------RDLYLSMWSHS--LDKPD-TGSVYDLVWSSDATQ-IAGAC-ANGSLLLGTIIQ  322 (323)
Q Consensus       265 d~~l~~~~~-~--------~~~~~~~~~~~--~~~~~-~~~v~~~~~s~~g~~-l~s~~-~dg~i~~~~l~~  322 (323)
                       +.+.+... .        +...+++..+.  +.... +....+++|+|||+. +++.. .++.|.++|+..
T Consensus       276 -~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          276 -DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             -TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             -CEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence             66665432 1        24557777654  11111 346899999999985 55666 599999999743

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.09  E-value=5.3e-07  Score=72.10  Aligned_cols=214  Identities=7%  Similarity=-0.006  Sum_probs=127.4

Q ss_pred             CCeEEEEeeCCeEEEEeCCCCcee-------EeeccCCCeEEEEECCCCCEEEEE-cCCCceEeeeEEeCCCCeeeEeec
Q psy11524         93 SNKVLLTQAKSLVIKPLSPNNKAT-------KWQAHDGLILKVAWCSSTDLILSG-GEDCKYKASFVWDTDGRQLYSSLT  164 (323)
Q Consensus        93 ~~~l~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~i~v~d~~~~~~~~~~~  164 (323)
                      |++|+++..  +.|+.++..+...       .+......+..++|++++..|+.+ ...+.|.   ++++++.....+..
T Consensus         1 ~~~l~~~~~--~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~---~~~~~g~~~~~~~~   75 (267)
T 1npe_A            1 GTHLLFAQT--GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIG---RASLHGGEPTTIIR   75 (267)
T ss_dssp             CEEEEEEEE--EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEE---EEESSSCCCEEEEC
T ss_pred             CcEEEEEcC--CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEE---EEecCCCCcEEEEE
Confidence            345666543  3677776655411       122223457799999976655544 4567888   99998665444432


Q ss_pred             -CCCceeEEEEecCCCEEEEEeC-C-eEEEEeCCCCeeee-cCCCCccEEEEEEcCCCCEEEEEec---Cc-EEEEEcCC
Q psy11524        165 -HDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSHSL-DKPDTGSVYDLVWSNDATQIAGACA---NV-IHIFDISS  236 (323)
Q Consensus       165 -~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~---d~-i~iwd~~~  236 (323)
                       .......++++|++..++.+.. . .|.++++.+..... ..........++++|++..|+.+..   .+ |..+++..
T Consensus        76 ~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg  155 (267)
T 1npe_A           76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG  155 (267)
T ss_dssp             TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred             CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence             2356789999998777776666 4 99999987653332 2222256789999997666655554   35 88888754


Q ss_pred             CceeeeecCCCCccceEEEEEccCCCCccceEEEEeCC-CCeEEEecccc----cCCCCccceeEEEEeeCCCeeE-eee
Q psy11524        237 SSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKN-RDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIA-GAC  310 (323)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~-~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~-s~~  310 (323)
                      . ....+ ..........++++|++    +.|.+.+.. +.+..++....    +... ......++.  ++..|+ +..
T Consensus       156 ~-~~~~~-~~~~~~~P~gia~d~~~----~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~--d~~~lyva~~  226 (267)
T 1npe_A          156 T-NRRIL-AQDNLGLPNGLTFDAFS----SQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTS--YGKNLYYTDW  226 (267)
T ss_dssp             C-CCEEE-ECTTCSCEEEEEEETTT----TEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEE--ETTEEEEEET
T ss_pred             C-CcEEE-EECCCCCCcEEEEcCCC----CEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEE--eCCEEEEEEC
Confidence            3 22221 12233467889999987    566665543 34555554331    1111 223345655  344444 444


Q ss_pred             cCCeEEEEEe
Q psy11524        311 ANGSLLLGTI  320 (323)
Q Consensus       311 ~dg~i~~~~l  320 (323)
                      .++.|..++.
T Consensus       227 ~~~~v~~~d~  236 (267)
T 1npe_A          227 KTNSVIAMDL  236 (267)
T ss_dssp             TTTEEEEEET
T ss_pred             CCCeEEEEeC
Confidence            5678877764

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.09  E-value=5.2e-07  Score=73.71  Aligned_cols=226  Identities=14%  Similarity=0.115  Sum_probs=127.2

Q ss_pred             cceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEeeccCCCeEEEEECCCCCEEEEEcCCC--ceEee
Q psy11524         72 LSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDC--KYKAS  149 (323)
Q Consensus        72 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~i  149 (323)
                      .++...+........++|+|+|+.+ ++....+.|+.++..+...........+..+++.++|+++++.....  .|.  
T Consensus        22 ~~~~~~~p~~~~pegia~~~~g~ly-v~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~--   98 (306)
T 2p4o_A           22 AKIITSFPVNTFLENLASAPDGTIF-VTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVV--   98 (306)
T ss_dssp             EEEEEEECTTCCEEEEEECTTSCEE-EEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEE--
T ss_pred             ceEeEeCCCCCCcceEEECCCCCEE-EEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEE--
Confidence            4445555555778899999998844 44444568999998776444434456788999999999666553332  355  


Q ss_pred             eEEeCCCCeeeEeec--CCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCC--eeee---------cCCCCccEEEEEEc
Q psy11524        150 FVWDTDGRQLYSSLT--HDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGW--SHSL---------DKPDTGSVYDLVWS  215 (323)
Q Consensus       150 ~v~d~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~--~~~~---------~~~~~~~v~~~~~~  215 (323)
                       .++.....+..+..  .......++..+++..+++... +.|+.+|..+.  .+..         ....-.....+  +
T Consensus        99 -~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s  175 (306)
T 2p4o_A           99 -SLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K  175 (306)
T ss_dssp             -EEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred             -EEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence             66765443433322  1223345555555544444333 48999997643  2210         01111234555  8


Q ss_pred             CCCCEEEEEec-Cc-EEEEEcCC-Cce--eeeecCCCCccceEEEEEccCCCCccceEEEEeC-CCCeEEEeccccc---
Q psy11524        216 NDATQIAGACA-NV-IHIFDISS-SSS--SNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDK-NRDLYLSMWSHSL---  286 (323)
Q Consensus       216 ~~~~~l~~~~~-d~-i~iwd~~~-~~~--~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~-~~~~~~~~~~~~~---  286 (323)
                      |++++|+.+.. .+ |..||+.. ++.  ...  +. .......++++++|.     +.+.+. .+.+.+++.....   
T Consensus       176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~--~~-~~~~P~gi~vd~dG~-----l~va~~~~~~V~~~~~~G~~~~~  247 (306)
T 2p4o_A          176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEI--FV-EQTNIDDFAFDVEGN-----LYGATHIYNSVVRIAPDRSTTII  247 (306)
T ss_dssp             EETTEEEEEETTTTEEEEEEBCTTSCBCCCEE--EE-ESCCCSSEEEBTTCC-----EEEECBTTCCEEEECTTCCEEEE
T ss_pred             cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEE--Ee-ccCCCCCeEECCCCC-----EEEEeCCCCeEEEECCCCCEEEE
Confidence            88887776665 45 99999874 332  111  11 012345678888873     222222 2334444332110   


Q ss_pred             --CCCCccceeEEEEe---eCCCeeEeeec
Q psy11524        287 --DKPDTGSVYDLVWS---SDATQIAGACA  311 (323)
Q Consensus       287 --~~~~~~~v~~~~~s---~~g~~l~s~~~  311 (323)
                        .........+++|.   |+++.|+.++.
T Consensus       248 ~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          248 AQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             ECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             eecccccCCceEEEEecccCCCCEEEEECC
Confidence              01113568999999   89887775554

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.08  E-value=2.9e-08  Score=84.30  Aligned_cols=218  Identities=7%  Similarity=-0.012  Sum_probs=127.6

Q ss_pred             CCCCeEEEEeeCC----eEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEc----------CCCceEeeeEEeC
Q psy11524         91 PDSNKVLLTQAKS----LVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGG----------EDCKYKASFVWDT  154 (323)
Q Consensus        91 p~~~~l~~~~~~~----~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~i~v~d~  154 (323)
                      |++++++++....    +.|.++|..+.  +..+.....+  .++++|||++++++.          .++.|.   ++|.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~Vs---viD~  156 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVE---VFDP  156 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE---EECT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEE---EEEC
Confidence            6788888776643    68999998766  4455444444  899999999888876          366788   9999


Q ss_pred             C-CCeeeEeecC-------CCceeEEEEecCCCEEEEEeC--C-eEEEEeCCCCeee-ecCCCCccEEEEEEcCCC-CEE
Q psy11524        155 D-GRQLYSSLTH-------DHPISSLAWAPGGDMFAVGSY--N-TLRLCDKVGWSHS-LDKPDTGSVYDLVWSNDA-TQI  221 (323)
Q Consensus       155 ~-~~~~~~~~~~-------~~~v~~~~~~p~~~~l~~~~~--~-~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~-~~l  221 (323)
                      . .+.+..+.-.       ......++|+|||++++++..  + .|.+.|+.+..+. .+. -.+.   ....|++ ..+
T Consensus       157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~-v~g~---~~~~p~g~~~~  232 (426)
T 3c75_H          157 VTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD-VPDC---YHIFPASPTVF  232 (426)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CCSE---EEEEEEETTEE
T ss_pred             CCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEE-cCCc---eeeccCCCcEE
Confidence            6 4555555421       234567899999999998874  3 8999999876443 222 1111   2233332 344


Q ss_pred             EEEecCc-EEEEEcCCCceeeeec--CCCCccce-EEEEEccCCCCccceEEEEeCCCCeEEEecccc---------cCC
Q psy11524        222 AGACANV-IHIFDISSSSSSNVTA--PLSHSHEI-TQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---------LDK  288 (323)
Q Consensus       222 ~~~~~d~-i~iwd~~~~~~~~~~~--~~~~~~~v-~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---------~~~  288 (323)
                      ++.+.|+ +.+.+..+++......  +.....++ ..+.+.+++    +.+.+-...+.+.+.+....         +..
T Consensus       233 v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg----~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~  308 (426)
T 3c75_H          233 YMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS----GRLVWPTYTGKIFQADLTAEGATFRAPIEALT  308 (426)
T ss_dssp             EEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT----CEEEEEBTTSEEEEEEECSSCEEECCCEESSC
T ss_pred             EEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC----CEEEEEeCCCcEEEEeccCCceEEeeeeeecc
Confidence            5555666 6666665554432100  11111111 234567776    44444444455555554221         000


Q ss_pred             -------CCccceeEEEEeeCCCeeEeeec----------CCeEEEEEee
Q psy11524        289 -------PDTGSVYDLVWSSDATQIAGACA----------NGSLLLGTII  321 (323)
Q Consensus       289 -------~~~~~v~~~~~s~~g~~l~s~~~----------dg~i~~~~l~  321 (323)
                             ........++++|+++.|+....          ++.|.+.|+.
T Consensus       309 ~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~  358 (426)
T 3c75_H          309 EAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE  358 (426)
T ss_dssp             TTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred             ccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC
Confidence                   00122234789999987776543          3468877753

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.07  E-value=1.6e-09  Score=94.29  Aligned_cols=210  Identities=10%  Similarity=0.028  Sum_probs=131.1

Q ss_pred             CCCCeEEEEeeCCeEEEEeCCCCc--eeEee-ccCCCeEEEEE-C-CCCCEEEEEcC------------------CCceE
Q psy11524         91 PDSNKVLLTQAKSLVIKPLSPNNK--ATKWQ-AHDGLILKVAW-C-SSTDLILSGGE------------------DCKYK  147 (323)
Q Consensus        91 p~~~~l~~~~~~~~~v~~~~~~~~--~~~~~-~~~~~v~~~~~-~-~~~~~l~~~~~------------------d~~i~  147 (323)
                      +||+++++...++..|.+.|+...  ...+. .....+..+++ + |++++++++++                  ++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            389999988777778988888774  22122 12345788888 5 99999988852                  34566


Q ss_pred             eeeEEeCCC-CeeeEeecCCCceeEEEEecCCCEEEEEeCCe--------------------------------------
Q psy11524        148 ASFVWDTDG-RQLYSSLTHDHPISSLAWAPGGDMFAVGSYNT--------------------------------------  188 (323)
Q Consensus       148 ~i~v~d~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~--------------------------------------  188 (323)
                         +.|.+. +...++.-.. ....++++|+|+++++.+.+.                                      
T Consensus       179 ---vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~  254 (595)
T 1fwx_A          179 ---AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  254 (595)
T ss_dssp             ---EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             ---EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence               888864 4444444322 457788999999988887531                                      


Q ss_pred             -EEEEeCCC--Cee-eecCCCCccEEEEEEcCCCCEEEEEecCc--EEEEEcCCCc------------eeeeecCCCCcc
Q psy11524        189 -LRLCDKVG--WSH-SLDKPDTGSVYDLVWSNDATQIAGACANV--IHIFDISSSS------------SSNVTAPLSHSH  250 (323)
Q Consensus       189 -i~i~d~~~--~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--i~iwd~~~~~------------~~~~~~~~~~~~  250 (323)
                       |.+.|.+.  ... .....-.....++.++|||+++++++...  |.++|+.+.+            ...+   .....
T Consensus       255 ~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~---v~vG~  331 (595)
T 1fwx_A          255 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE---PELGL  331 (595)
T ss_dssp             TEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC---CBCCS
T ss_pred             cEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE---cCCCC
Confidence             34444332  111 10111123456789999999998887655  9999998653            2222   23345


Q ss_pred             ceEEEEEccCCCCccceEEEEeCCCCeEEEecccc--------------cCC-----CCccceeEEEEeeCCCeeEeeec
Q psy11524        251 EITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS--------------LDK-----PDTGSVYDLVWSSDATQIAGACA  311 (323)
Q Consensus       251 ~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~--------------~~~-----~~~~~v~~~~~s~~g~~l~s~~~  311 (323)
                      ....++|+|+|    ....+.-.++.+..|++...              ...     +|...-.++..+|||++|+++..
T Consensus       332 gP~h~aF~~dG----~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          332 GPLHTAFDGRG----NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             CEEEEEECTTS----EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             CcceEEECCCC----eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            67889999997    33334445666777776551              000     11111123355799999987653

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.03  E-value=1.3e-07  Score=74.71  Aligned_cols=191  Identities=12%  Similarity=0.062  Sum_probs=113.3

Q ss_pred             CeEEEEECCCCCEEEEEcC--CCceEeeeEEeCC-CCeeeEeecCCC-ceeEEEEecCCCEEEEEeC-C-eEEEEeCCCC
Q psy11524        124 LILKVAWCSSTDLILSGGE--DCKYKASFVWDTD-GRQLYSSLTHDH-PISSLAWAPGGDMFAVGSY-N-TLRLCDKVGW  197 (323)
Q Consensus       124 ~v~~~~~~~~~~~l~~~~~--d~~i~~i~v~d~~-~~~~~~~~~~~~-~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~  197 (323)
                      ....+.|+||+.+.++.+.  ++.|.   ++|+. ++.+..+.-... ....+++  ++..++.+.. + .+.++|..+.
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~---~iD~~tg~v~~~i~l~~~~fgeGi~~--~g~~lyv~t~~~~~v~viD~~t~   96 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVR---QVALQTGKVENIHKMDDSYFGEGLTL--LNEKLYQVVWLKNIGFIYDRRTL   96 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEE---EEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEETTCSEEEEEETTTT
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEE---EEECCCCCEEEEEecCCCcceEEEEE--eCCEEEEEEecCCEEEEEECCCC
Confidence            3579999998755555443  57899   99996 555555542221 2234444  4667777776 4 9999998765


Q ss_pred             ee-eecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCcc---ceEEEEEccCCC-----Cccce
Q psy11524        198 SH-SLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSH---EITQLAVNQTGS-----LQERH  267 (323)
Q Consensus       198 ~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~~p~g~-----~~d~~  267 (323)
                      .. ..+.....  ....+++||+.|+++..++ |.++|..+.+.+..+.......   .++.+.|. ++.     ...+.
T Consensus        97 ~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~  173 (266)
T 2iwa_A           97 SNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC  173 (266)
T ss_dssp             EEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred             cEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe
Confidence            33 33321111  1234566888888777667 9999999988877743322222   35567777 542     12234


Q ss_pred             EEEEeCCCCeEEEecccc-c-----CC--CCccceeEEEEeeCCC-eeEeeecCCeEEEEEeec
Q psy11524        268 VAFIDKNRDLYLSMWSHS-L-----DK--PDTGSVYDLVWSSDAT-QIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       268 l~~~~~~~~~~~~~~~~~-~-----~~--~~~~~v~~~~~s~~g~-~l~s~~~dg~i~~~~l~~  322 (323)
                      |.+.|......+-.+... .     ..  ......+.++|+|+++ .++++...+.+.+-++.+
T Consensus       174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            444444332221111110 0     00  0013568999999986 555777888888888764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.01  E-value=2.4e-07  Score=76.34  Aligned_cols=229  Identities=10%  Similarity=-0.008  Sum_probs=131.7

Q ss_pred             CCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeec--------------------cCCCeEEEEECC-CCCEEEE
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQA--------------------HDGLILKVAWCS-STDLILS  139 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~--------------------~~~~v~~~~~~~-~~~~l~~  139 (323)
                      ....+++|+++|+.+.++..+ +.|..|+..+. ...+..                    ....+..+++.+ +++ |+.
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v   96 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQD-GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI   96 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTT-SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred             CCceEEEEcCCCCEEEEEcCC-CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence            345678899998867666544 57888887654 333321                    123578999998 565 444


Q ss_pred             EcCCCceEeeeEEeCCCCeeeEeecC-----CCceeEEEEec-CCCEEEEEeC------------------CeEEEEeCC
Q psy11524        140 GGEDCKYKASFVWDTDGRQLYSSLTH-----DHPISSLAWAP-GGDMFAVGSY------------------NTLRLCDKV  195 (323)
Q Consensus       140 ~~~d~~i~~i~v~d~~~~~~~~~~~~-----~~~v~~~~~~p-~~~~l~~~~~------------------~~i~i~d~~  195 (323)
                      +...+.+.   .+|.++..+..+...     ......+++.| +|+++++...                  +.|..+|..
T Consensus        97 ~d~~~~i~---~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  173 (322)
T 2fp8_A           97 VDCYYHLS---VVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS  173 (322)
T ss_dssp             EETTTEEE---EECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred             EECCCCEE---EEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence            54445577   888875544443211     13468899999 9987665432                  368888876


Q ss_pred             CCeeeecCCCCccEEEEEEcCCCCEEEEEe-cCc-EEEEEcCCCc--eeeeecCCCCccceEEEEEccCCC-----Cc--
Q psy11524        196 GWSHSLDKPDTGSVYDLVWSNDATQIAGAC-ANV-IHIFDISSSS--SSNVTAPLSHSHEITQLAVNQTGS-----LQ--  264 (323)
Q Consensus       196 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~-i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~p~g~-----~~--  264 (323)
                      +...............++++|+|++|+.+. ..+ |..|++....  ....  +....+ ...+++.++|.     ..  
T Consensus       174 ~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~--~~~~~g-P~gi~~d~~G~l~va~~~~~  250 (322)
T 2fp8_A          174 TKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEV--LVKIPN-PGNIKRNADGHFWVSSSEEL  250 (322)
T ss_dssp             TTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEE--EEECSS-EEEEEECTTSCEEEEEEEET
T ss_pred             CCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccce--EEeCCC-CCCeEECCCCCEEEEecCcc
Confidence            554332222223456799999998776664 446 9999987532  1111  111122 67788888873     00  


Q ss_pred             --------cceEEEEeCCCCeE-EEecccccCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        265 --------ERHVAFIDKNRDLY-LSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       265 --------d~~l~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                              ...|..++.++.+. .+....   ...-..+.++++ .+++++++...++.|..+++..
T Consensus       251 ~~~~~~~~~~~v~~~d~~G~~~~~~~~~~---g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          251 DGNMHGRVDPKGIKFDEFGNILEVIPLPP---PFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             TSSTTSCEEEEEEEECTTSCEEEEEECCT---TTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             cccccCCCccEEEEECCCCCEEEEEECCC---CCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence                    11233333333211 111111   000134566666 4676666766788888888743

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.94  E-value=1.1e-07  Score=78.35  Aligned_cols=212  Identities=12%  Similarity=0.056  Sum_probs=130.7

Q ss_pred             CCeEEEEeeCCeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeE
Q psy11524         93 SNKVLLTQAKSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISS  171 (323)
Q Consensus        93 ~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~  171 (323)
                      +..+.+++.+ +.++.++..+. ..........+.++...+++. +..++.++.+.   .+|.+++....+......+.+
T Consensus       107 ~~~l~v~t~~-~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~---~~d~~g~~~~~~~~~~~~~~~  181 (330)
T 3hxj_A          107 EDILYVTSMD-GHLYAINTDGTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLY---AINPDGTEKWRFKTNDAITSA  181 (330)
T ss_dssp             TTEEEEECTT-SEEEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEE---EECTTSCEEEEEECSSCCCSC
T ss_pred             CCEEEEEecC-CEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEE---EECCCCCEeEEEecCCCceee
Confidence            4456666555 57888887743 333333444556667777776 55577778888   999986666666655566777


Q ss_pred             EEEecCCCEEEEEeCCeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCcc
Q psy11524        172 LAWAPGGDMFAVGSYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSH  250 (323)
Q Consensus       172 ~~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~  250 (323)
                      +...+++.+++..  +.+..+|..+............+.++...++|. |..++.++ +..+| .+++.+...  .....
T Consensus       182 ~~~d~~g~l~v~t--~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~~~--~~~~~  255 (330)
T 3hxj_A          182 ASIGKDGTIYFGS--DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAIN-PDGTEKWRF--KTGKR  255 (330)
T ss_dssp             CEECTTCCEEEES--SSEEEECTTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEEC-TTSCEEEEE--ECSSC
T ss_pred             eEEcCCCEEEEEe--CEEEEECCCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEEC-CCCCEeEEe--eCCCC
Confidence            8887788765544  888999954554444443445678888888875 55566666 88888 456555542  22222


Q ss_pred             ceEEEEEccCCCCccceEEEEeCCCCeEEEecccc---cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        251 EITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       251 ~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      .+..+.+.+++     .|.+...++.+..++....   ........+.++...++|+ |..++.+|.+++....
T Consensus       256 ~~~~~~~~~~g-----~l~v~t~~ggl~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~  323 (330)
T 3hxj_A          256 IESSPVIGNTD-----TIYFGSYDGHLYAINPDGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNL  323 (330)
T ss_dssp             CCSCCEECTTS-----CEEEECTTCEEEEECTTSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC-
T ss_pred             ccccceEcCCC-----eEEEecCCCCEEEECCCCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecc
Confidence            33345555554     4555555544554443211   1111244566777777775 6668889999887653

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.93  E-value=1.5e-07  Score=78.56  Aligned_cols=203  Identities=8%  Similarity=-0.055  Sum_probs=117.1

Q ss_pred             eeEeccCCcceeeeee----------cc---ccc-cccceeeecCCC--------CCEEEEEEcCCCCeEEEEeeC-CeE
Q psy11524         49 NYPISPYISVLHSYAA----------SH---SWP-QALSLCRTLNVS--------PPVYSAAWSPDSNKVLLTQAK-SLV  105 (323)
Q Consensus        49 ~~~~~~~~~~~~~~~~----------~~---~~~-~~~~~~~~~~~~--------~~v~~~~~sp~~~~l~~~~~~-~~~  105 (323)
                      .+.++||++.++....          ++   .+| .+.+...++.-.        .....++++|||++++++... ...
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            6999999988775432          11   234 445555555321        346789999999999988643 346


Q ss_pred             EEE--eCCCCceeEeeccC-------CCeEEEEE-------------------------------------CCCCCEEEE
Q psy11524        106 IKP--LSPNNKATKWQAHD-------GLILKVAW-------------------------------------CSSTDLILS  139 (323)
Q Consensus       106 v~~--~~~~~~~~~~~~~~-------~~v~~~~~-------------------------------------~~~~~~l~~  139 (323)
                      +.+  +|... ...+....       +.-.-+++                                     .+++..++.
T Consensus       149 v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~  227 (368)
T 1mda_H          149 AGLSVPGASD-DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW  227 (368)
T ss_dssp             EEEEETTTEE-EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE
T ss_pred             EEEEEEchhh-ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEE
Confidence            777  88754 22221100       00000112                                     222333333


Q ss_pred             EcCCCceEeeeEEeCCCCee---eEeec-------C---CCceeEEEEecCCCEEEEEe----C------CeEEEEeCCC
Q psy11524        140 GGEDCKYKASFVWDTDGRQL---YSSLT-------H---DHPISSLAWAPGGDMFAVGS----Y------NTLRLCDKVG  196 (323)
Q Consensus       140 ~~~d~~i~~i~v~d~~~~~~---~~~~~-------~---~~~v~~~~~~p~~~~l~~~~----~------~~i~i~d~~~  196 (323)
                      .+. +.+.   +.|..+...   ..+..       .   ......++++||++.++++.    .      +.+.++|+.+
T Consensus       228 vs~-~~V~---viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t  303 (368)
T 1mda_H          228 AVA-SSIL---QGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV  303 (368)
T ss_dssp             CBS-SCCE---EEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS
T ss_pred             EcC-CEEE---EEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC
Confidence            333 5566   667643221   11110       0   11122278999998877643    2      3566999886


Q ss_pred             CeeeecCCCCccEEEEEEcCCCCEE-EEEe-cCc-EEEEEcCCCceeeeecCCCCccceEEEEEcc
Q psy11524        197 WSHSLDKPDTGSVYDLVWSNDATQI-AGAC-ANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQ  259 (323)
Q Consensus       197 ~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p  259 (323)
                      .+......-......++|+|||+++ ++.. .++ |.++|+.+++.+.+  +... .....+++.+
T Consensus       304 ~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~--I~vg-~~P~~i~~~~  366 (368)
T 1mda_H          304 GQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS--VELD-KGPESLSVQN  366 (368)
T ss_dssp             CCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEE--CCCC-SCCCEEECCC
T ss_pred             CeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEE--EECC-CCCCEEEeec
Confidence            5443322234468999999999854 4444 477 99999999999988  4433 3444566554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.90  E-value=8.2e-07  Score=70.20  Aligned_cols=200  Identities=6%  Similarity=-0.014  Sum_probs=123.2

Q ss_pred             cceeeecCCCC--CEEEEEEcCCCCeEEEEee--CCeEEEEeCCCCc--eeEeec-cCCCeEEEEECCCCCEE-EEEcCC
Q psy11524         72 LSLCRTLNVSP--PVYSAAWSPDSNKVLLTQA--KSLVIKPLSPNNK--ATKWQA-HDGLILKVAWCSSTDLI-LSGGED  143 (323)
Q Consensus        72 ~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~~--~~~~v~~~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l-~~~~~d  143 (323)
                      .++.+++.|..  ....+.|+|++ .|+.++.  ....|..+|..+.  ...+.- .......+++.  ++.| ++...+
T Consensus         9 ~~vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~   85 (266)
T 2iwa_A            9 VEVLNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK   85 (266)
T ss_dssp             EEEEEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred             ceEEEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence            45566677764  46899999986 4554433  2468999998765  333321 11122345554  4444 445567


Q ss_pred             CceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCCee-eecCC--CC---ccEEEEEEc
Q psy11524        144 CKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGWSH-SLDKP--DT---GSVYDLVWS  215 (323)
Q Consensus       144 ~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~-~~~~~--~~---~~v~~~~~~  215 (323)
                      +.+.   ++|.. .+.+..+.....  ....+++||+.++++.. +.|.++|..+... ....-  ..   ..+..+.|.
T Consensus        86 ~~v~---viD~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~  160 (266)
T 2iwa_A           86 NIGF---IYDRRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI  160 (266)
T ss_dssp             SEEE---EEETTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred             CEEE---EEECCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence            8888   99986 455566643312  22446678877776655 4999999876432 22221  11   136788888


Q ss_pred             CCCCEEEEEecCc-EEEEEcCCCceeeeecCCCC-----------ccceEEEEEccCCCCccceEEEEe-CCCCeEEEec
Q psy11524        216 NDATQIAGACANV-IHIFDISSSSSSNVTAPLSH-----------SHEITQLAVNQTGSLQERHVAFID-KNRDLYLSMW  282 (323)
Q Consensus       216 ~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~-----------~~~v~~~~~~p~g~~~d~~l~~~~-~~~~~~~~~~  282 (323)
                       +|+..+....++ |.+.|..+++.+..+.+.+.           ......++|+|++    +.+.+.+ ....+...++
T Consensus       161 -dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~----~~lfVTgk~~~~v~~i~l  235 (266)
T 2iwa_A          161 -NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN----KRIFVTGKLWPKLFEIKL  235 (266)
T ss_dssp             -TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT----TEEEEEETTCSEEEEEEE
T ss_pred             -CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCC----CEEEEECCCCCeEEEEEE
Confidence             775444444456 99999999998887533211           1356899999998    5565544 4556666665


Q ss_pred             cc
Q psy11524        283 SH  284 (323)
Q Consensus       283 ~~  284 (323)
                      ..
T Consensus       236 ~~  237 (266)
T 2iwa_A          236 HL  237 (266)
T ss_dssp             EE
T ss_pred             ec
Confidence            54

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.86  E-value=7.3e-08  Score=84.02  Aligned_cols=189  Identities=10%  Similarity=0.007  Sum_probs=119.9

Q ss_pred             ecCCCCCEEEEEE-c-CCCCeEEEEe-----------------eCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCC
Q psy11524         77 TLNVSPPVYSAAW-S-PDSNKVLLTQ-----------------AKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTD  135 (323)
Q Consensus        77 ~~~~~~~v~~~~~-s-p~~~~l~~~~-----------------~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~  135 (323)
                      .+........+++ + |+++++++++                 ..++.+.+.|..+.  ..++.- .+....++++|+|+
T Consensus       129 ~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~V-gg~pd~~~~spdGk  207 (595)
T 1fwx_A          129 EIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGK  207 (595)
T ss_dssp             ECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSS
T ss_pred             eCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEe-CCCccceEECCCCC
Confidence            4445677899998 5 9999998885                 23357888887765  223322 12456788999999


Q ss_pred             EEEEEcCCC---------------ceE--------------------eeeEEeCCC---Ce-eeEeecCCCceeEEEEec
Q psy11524        136 LILSGGEDC---------------KYK--------------------ASFVWDTDG---RQ-LYSSLTHDHPISSLAWAP  176 (323)
Q Consensus       136 ~l~~~~~d~---------------~i~--------------------~i~v~d~~~---~~-~~~~~~~~~~v~~~~~~p  176 (323)
                      ++++.+.+.               .+.                    .|.|.|.+.   +. +..+. -.....++.++|
T Consensus       208 ~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sP  286 (595)
T 1fwx_A          208 WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAP  286 (595)
T ss_dssp             EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECT
T ss_pred             EEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcC
Confidence            998888653               111                    122666543   22 22332 234567899999


Q ss_pred             CCCEEEEEeC--CeEEEEeCCCCe------------eeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCC-----
Q psy11524        177 GGDMFAVGSY--NTLRLCDKVGWS------------HSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISS-----  236 (323)
Q Consensus       177 ~~~~l~~~~~--~~i~i~d~~~~~------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~-----  236 (323)
                      ||+++++++.  ++|.++|+....            +.....-......++|+|+|...++...++ |..||+..     
T Consensus       287 DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~  366 (595)
T 1fwx_A          287 DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAY  366 (595)
T ss_dssp             TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHH
T ss_pred             CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhh
Confidence            9999999887  399999987431            222222445689999999994334455577 99999876     


Q ss_pred             -----CceeeeecCCCCccce-----EEEEEccCCCCccceEEEEeC
Q psy11524        237 -----SSSSNVTAPLSHSHEI-----TQLAVNQTGSLQERHVAFIDK  273 (323)
Q Consensus       237 -----~~~~~~~~~~~~~~~v-----~~~~~~p~g~~~d~~l~~~~~  273 (323)
                           .+.+.+  +..|..+-     ..+.++|||    +++.+.+.
T Consensus       367 ~g~~~~~vi~k--idV~yqpGh~~~~~g~t~~~DG----k~l~~~Nk  407 (595)
T 1fwx_A          367 AGEKVDPIKDK--LDVHYQPGHLKTVMGETLDATN----DWLVCLSK  407 (595)
T ss_dssp             HTCSCCCEEEE--EECSSCEEEEEETTTTSTTCCS----SEEEEEES
T ss_pred             cccccceeEEE--eecccccccceeccceEeCCCC----CEEEEcCC
Confidence                 445555  23333221     223457888    55555543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.80  E-value=6.7e-06  Score=70.43  Aligned_cols=152  Identities=9%  Similarity=0.121  Sum_probs=97.2

Q ss_pred             CCEEEEEEcC-CCCeEEEEeeCCeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcC-CCceE-eeeEEeCCCC
Q psy11524         82 PPVYSAAWSP-DSNKVLLTQAKSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGE-DCKYK-ASFVWDTDGR  157 (323)
Q Consensus        82 ~~v~~~~~sp-~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~-~i~v~d~~~~  157 (323)
                      .....++++| ++..|+++... +.|+.++..+. +..+.........++|+++|++|+.+.. ++.+. .+.+.+.++.
T Consensus       137 ~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~  215 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG  215 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred             CCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence            3567899998 46677766555 68888988765 4555455567889999999996665554 22221 1114554432


Q ss_pred             ee--eEeecCCCceeEEEEec-CCCEEEEEeCC-eEEEEeCCCCee-ee-cCCCCccEEEEEEcCCCCEEEEEecC-c-E
Q psy11524        158 QL--YSSLTHDHPISSLAWAP-GGDMFAVGSYN-TLRLCDKVGWSH-SL-DKPDTGSVYDLVWSNDATQIAGACAN-V-I  229 (323)
Q Consensus       158 ~~--~~~~~~~~~v~~~~~~p-~~~~l~~~~~~-~i~i~d~~~~~~-~~-~~~~~~~v~~~~~~~~~~~l~~~~~d-~-i  229 (323)
                      ..  ..+.. ......++++| +|.++++-..+ .|..++..+... .. ..+.......++|+|+|++|+.+... + |
T Consensus       216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI  294 (430)
T ss_dssp             SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence            22  22322 34467889999 56544443334 999999886644 22 12223457899999999976666554 4 9


Q ss_pred             EEEEcC
Q psy11524        230 HIFDIS  235 (323)
Q Consensus       230 ~iwd~~  235 (323)
                      ..++..
T Consensus       295 ~~~~~d  300 (430)
T 3tc9_A          295 LRSDYD  300 (430)
T ss_dssp             EEEEEE
T ss_pred             EEEeCC
Confidence            888765

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.78  E-value=2.7e-05  Score=61.20  Aligned_cols=191  Identities=11%  Similarity=0.126  Sum_probs=123.4

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEee-ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC--C
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQ-AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD--G  156 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~--~  156 (323)
                      ...+..++|+|++..|++..+..+.|...|..++ ...+. ........+++.+++.++++.-.++.+.   ++++.  +
T Consensus        26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~---~~~v~~~~  102 (255)
T 3qqz_A           26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIY---VISLTPNS  102 (255)
T ss_dssp             CSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEE---EEEECTTC
T ss_pred             ccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEE---EEEcCCCC
Confidence            4679999999998888887777789999998866 33332 2235678899999888767665677777   88874  2


Q ss_pred             C--eeeEee------cCCCceeEEEEecCCCEEEEEeC-C--eEEEEe--CCCCeeeec-------CCCCccEEEEEEcC
Q psy11524        157 R--QLYSSL------THDHPISSLAWAPGGDMFAVGSY-N--TLRLCD--KVGWSHSLD-------KPDTGSVYDLVWSN  216 (323)
Q Consensus       157 ~--~~~~~~------~~~~~v~~~~~~p~~~~l~~~~~-~--~i~i~d--~~~~~~~~~-------~~~~~~v~~~~~~~  216 (323)
                      .  .+....      ........++|+|+++.|.++.+ +  .|+.|+  ..+......       ......+..++++|
T Consensus       103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp  182 (255)
T 3qqz_A          103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQ  182 (255)
T ss_dssp             CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEET
T ss_pred             eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcC
Confidence            2  112221      12345689999999877777776 4  455555  122212211       11234578999999


Q ss_pred             CCCEEEEEec-Cc-EEEEEcCCCceeeeecCCCC-------ccceEEEEEccCCCCccceEEEEeCCCCeEEE
Q psy11524        217 DATQIAGACA-NV-IHIFDISSSSSSNVTAPLSH-------SHEITQLAVNQTGSLQERHVAFIDKNRDLYLS  280 (323)
Q Consensus       217 ~~~~l~~~~~-d~-i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~  280 (323)
                      ....|++.+. .. +..+|.. ++.+..+.+...       -.....++|.++|     .+.+.+..+..+.+
T Consensus       183 ~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G-----~lyIvsE~n~~y~f  249 (255)
T 3qqz_A          183 QKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG-----NIYIVSEPNRFYRF  249 (255)
T ss_dssp             TTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTC-----CEEEEETTTEEEEE
T ss_pred             CCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCC-----CEEEEcCCceEEEE
Confidence            6555555555 45 9999955 666665444421       1256889999997     46666666544433

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.77  E-value=1.3e-06  Score=80.36  Aligned_cols=192  Identities=13%  Similarity=0.070  Sum_probs=111.1

Q ss_pred             CEEEEEEc-CCCCeEEEEeeCC----eEEEEeCCCCc-eeEeecc-CCCeEEEEECCCCCEEEEEcCCC--ceEeeeEEe
Q psy11524         83 PVYSAAWS-PDSNKVLLTQAKS----LVIKPLSPNNK-ATKWQAH-DGLILKVAWCSSTDLILSGGEDC--KYKASFVWD  153 (323)
Q Consensus        83 ~v~~~~~s-p~~~~l~~~~~~~----~~v~~~~~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~--~i~~i~v~d  153 (323)
                      .+...+|| |||++||++....    ..|+++++.++ .. +... ......++|+|||+.|+....+.  .-..|++++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            67889999 9999999886543    35999988765 31 1111 11134689999998888776652  223455888


Q ss_pred             CCCCe---eeEee-cCCCceeEEEEecCCCEEEEEeC---C-eEEEEeCCCC--ee--e-ecCCCCccEEEEEEcCCCCE
Q psy11524        154 TDGRQ---LYSSL-THDHPISSLAWAPGGDMFAVGSY---N-TLRLCDKVGW--SH--S-LDKPDTGSVYDLVWSNDATQ  220 (323)
Q Consensus       154 ~~~~~---~~~~~-~~~~~v~~~~~~p~~~~l~~~~~---~-~i~i~d~~~~--~~--~-~~~~~~~~v~~~~~~~~~~~  220 (323)
                      +.+..   ...+. .......++.|+|||++|+..+.   . .|+++|+.+.  ..  . ..........++.|+.++.+
T Consensus       254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l  333 (751)
T 2xe4_A          254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHL  333 (751)
T ss_dssp             TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEE
T ss_pred             CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEE
Confidence            85432   22222 22234567899999999876653   3 7899998753  22  3 33333445566666554444


Q ss_pred             EEEEecC--c---EEEEEcCCC-ceee-eecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEe
Q psy11524        221 IAGACAN--V---IHIFDISSS-SSSN-VTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSM  281 (323)
Q Consensus       221 l~~~~~d--~---i~iwd~~~~-~~~~-~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~  281 (323)
                      ++....+  +   |..+|+.++ +... .+ .......+..+.+.  +   +..+.....++...++.
T Consensus       334 ~~~t~~~~a~~~~L~~~d~~~~~~~~~~li-~~~~~~~l~~~~~~--~---~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          334 VILTNEGGAVNHKLLIAPRGQPSDWSHVLV-DHSEDVFMESIAVR--S---NYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             EEEECTTTCTTCEEEEEETTSTTCCCCEEE-CCCSSEEEEEEEEC--S---SEEEEEEEETTEEEEEE
T ss_pred             EEEeCCCCCCCcEEEEEcCCCcccceeeEE-CCCCCcEEEEEEEE--C---CEEEEEEEeCCEEEEEE
Confidence            4454443  2   667777642 2222 11 12222245555554  3   14555566666544443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.76  E-value=1.5e-07  Score=77.53  Aligned_cols=217  Identities=13%  Similarity=0.086  Sum_probs=124.2

Q ss_pred             CCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCce-eEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeee
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKA-TKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLY  160 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~  160 (323)
                      ..+.++...++|...+ ++ . . +..++..+.. ..+...........+.  +..+..++.++.+.   .+|.+++...
T Consensus        60 ~~~~~~~~~~~g~l~v-~t-~-~-l~~~d~~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~---~~d~~g~~~~  130 (330)
T 3hxj_A           60 IIECRPSIGKDGTIYF-GS-D-K-VYAINPDGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLY---AINTDGTEKW  130 (330)
T ss_dssp             EEEECCEETTTTEECC-SS-C-E-EEEECCCGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEE---EECTTSCEEE
T ss_pred             CcccceEEecCCcEEE-ec-C-c-EEEECCCCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEE---EEcCCCCEEE
Confidence            3456777777775443 32 3 2 7778865442 2222222222222333  45677788888888   9998866666


Q ss_pred             EeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCcEEEEEcCCCce
Q psy11524        161 SSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISSSSS  239 (323)
Q Consensus       161 ~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~i~iwd~~~~~~  239 (323)
                      ........+.++...+++. +..++. +.+..+|..+............+.++...+++... .++ .+|..+| .+++.
T Consensus       131 ~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t-~~l~~~d-~~g~~  206 (330)
T 3hxj_A          131 RFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIGKDGTIY-FGS-DKVYAIN-PDGTE  206 (330)
T ss_dssp             EEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEE-EES-SSEEEEC-TTSCE
T ss_pred             EEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEEcCCCEEE-EEe-CEEEEEC-CCCcE
Confidence            6665555567777777777 445555 59999998854443333334456777787888644 444 3399999 77776


Q ss_pred             eeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc---cCCCCccceeEEEEeeCCCeeEeeecCCeEE
Q psy11524        240 SNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---LDKPDTGSVYDLVWSSDATQIAGACANGSLL  316 (323)
Q Consensus       240 ~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~  316 (323)
                      +..  .......+.++...++|     .|.+...++.+..++....   ........+.++...++| .|..++.+|.+.
T Consensus       207 ~~~--~~~~~~~~~~~~~~~~g-----~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~  278 (330)
T 3hxj_A          207 KWN--FYAGYWTVTRPAISEDG-----TIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLY  278 (330)
T ss_dssp             EEE--ECCSSCCCSCCEECTTS-----CEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEE
T ss_pred             EEE--EccCCcceeceEECCCC-----eEEEEcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEE
Confidence            665  33344557777777775     3444444444333332111   000112223445555555 566677787777


Q ss_pred             EEE
Q psy11524        317 LGT  319 (323)
Q Consensus       317 ~~~  319 (323)
                      .++
T Consensus       279 ~~d  281 (330)
T 3hxj_A          279 AIN  281 (330)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            665

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.75  E-value=1.2e-06  Score=73.82  Aligned_cols=182  Identities=16%  Similarity=0.126  Sum_probs=114.3

Q ss_pred             CEEEEEEcCCCCeEEEEeeC-----CeEEEEeCCCCc--eeEeecc--C-CCeEEEEECCCCCEEEEEc-----------
Q psy11524         83 PVYSAAWSPDSNKVLLTQAK-----SLVIKPLSPNNK--ATKWQAH--D-GLILKVAWCSSTDLILSGG-----------  141 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~~-----~~~v~~~~~~~~--~~~~~~~--~-~~v~~~~~~~~~~~l~~~~-----------  141 (323)
                      .-..+..+|+| .++++..+     .+.+.++|..+.  +.++...  . .--..+-|+|+++.+++..           
T Consensus       139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~  217 (462)
T 2ece_A          139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGL  217 (462)
T ss_dssp             EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCC
T ss_pred             cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccccc
Confidence            45677889999 55555443     157888987754  4444322  1 1234578899999888874           


Q ss_pred             --------CCCceEeeeEEeCCCC-eeeEeecC--CCceeEEEE--ecCCCEEEEEeC------C-eEEEEeCCCCee--
Q psy11524        142 --------EDCKYKASFVWDTDGR-QLYSSLTH--DHPISSLAW--APGGDMFAVGSY------N-TLRLCDKVGWSH--  199 (323)
Q Consensus       142 --------~d~~i~~i~v~d~~~~-~~~~~~~~--~~~v~~~~~--~p~~~~l~~~~~------~-~i~i~d~~~~~~--  199 (323)
                              .+.+|.   +||++.. .+.++...  ......+.|  +|+++++++++.      + +|.+|.......  
T Consensus       218 ~~~~~~~~~~d~V~---v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~  294 (462)
T 2ece_A          218 KLEHLKDRYGNRIH---FWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNA  294 (462)
T ss_dssp             CTTTHHHHSCCEEE---EEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEE
T ss_pred             chhhhhhccCCEEE---EEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeE
Confidence                    367888   9999644 44444432  134556666  999999777664      2 676554332110  


Q ss_pred             -ee--cCC----------------CCccEEEEEEcCCCCEEEEEecCc--EEEEEcCCC---ceeeeecCCCC-------
Q psy11524        200 -SL--DKP----------------DTGSVYDLVWSNDATQIAGACANV--IHIFDISSS---SSSNVTAPLSH-------  248 (323)
Q Consensus       200 -~~--~~~----------------~~~~v~~~~~~~~~~~l~~~~~d~--i~iwd~~~~---~~~~~~~~~~~-------  248 (323)
                       +.  ...                .......+.+||||++|.++....  |.+||+...   +.+..+...+.       
T Consensus       295 ~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~  374 (462)
T 2ece_A          295 EKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHP  374 (462)
T ss_dssp             EEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCT
T ss_pred             EEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccc
Confidence             00  000                024578899999999999988765  999998632   34443211111       


Q ss_pred             -----ccceEEEEEccCCCCccceEEEEe
Q psy11524        249 -----SHEITQLAVNQTGSLQERHVAFID  272 (323)
Q Consensus       249 -----~~~v~~~~~~p~g~~~d~~l~~~~  272 (323)
                           .+....++++|+|    +.|.+.+
T Consensus       375 ~G~~~~ggPr~~~lSpDG----k~LyVaN  399 (462)
T 2ece_A          375 AGHKLTGAPQMLEISRDG----RRVYVTN  399 (462)
T ss_dssp             TSCCCCSCCCCEEECTTS----SEEEEEC
T ss_pred             ccccCCCCCCEEEEcCCC----CEEEEEc
Confidence                 0135789999999    7787776

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.75  E-value=2.9e-09  Score=89.56  Aligned_cols=140  Identities=9%  Similarity=0.015  Sum_probs=72.8

Q ss_pred             CCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC-CCCeeeEeecCCC-
Q psy11524         92 DSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT-DGRQLYSSLTHDH-  167 (323)
Q Consensus        92 ~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~-~~~~~~~~~~~~~-  167 (323)
                      ++..+++++.+ +.|+.||..+.  ...+..  +.+.+..+.+++..+++++.|+.++   .||. +++.+..+..+.. 
T Consensus         8 ~~~~v~~gs~d-g~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~---a~d~~tG~~~w~~~~~~~~   81 (369)
T 2hz6_A            8 PETLLFVSTLD-GSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLY---TLGSKNNEGLTKLPFTIPE   81 (369)
T ss_dssp             CTTEEEEEETT-SEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEE---EC-----CCSEECSCCHHH
T ss_pred             eCCEEEEEcCC-CEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEE---EEECCCCceeeeeeccCcc
Confidence            56778877766 59999997655  223333  4455555566777888888999999   9999 4666555543211 


Q ss_pred             cee-EEEEecCCCEEEEEeCC-eEEEEeCCCCeee-ecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeee
Q psy11524        168 PIS-SLAWAPGGDMFAVGSYN-TLRLCDKVGWSHS-LDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNV  242 (323)
Q Consensus       168 ~v~-~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~  242 (323)
                      .+. +..+. ++..+++++.+ .++.||..+.... ....+.    ...++|++..+++++.++ |+.||.++|+.+..
T Consensus        82 ~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~  155 (369)
T 2hz6_A           82 LVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN  155 (369)
T ss_dssp             HHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred             ccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence            110 11111 23456666664 9999998754333 322221    234567888999999999 99999999987655

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.73  E-value=1.6e-09  Score=91.09  Aligned_cols=172  Identities=7%  Similarity=-0.079  Sum_probs=85.0

Q ss_pred             CCCEEEEEcCCCceEeeeEEeC-CCCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCC-CCeeeecCCCCc-c
Q psy11524        133 STDLILSGGEDCKYKASFVWDT-DGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKV-GWSHSLDKPDTG-S  208 (323)
Q Consensus       133 ~~~~l~~~~~d~~i~~i~v~d~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~-~~~~~~~~~~~~-~  208 (323)
                      ++..+++++.|+.+.   .||. +++.+..+..  ..+.+..+.+++..+++++.+ .++.||.. ++.+.....+.. .
T Consensus         8 ~~~~v~~gs~dg~v~---a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~   82 (369)
T 2hz6_A            8 PETLLFVSTLDGSLH---AVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL   82 (369)
T ss_dssp             CTTEEEEEETTSEEE---EEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred             eCCEEEEEcCCCEEE---EEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence            577899999999999   9998 5777777765  455555556677777776665 99999985 433322222211 1


Q ss_pred             EE-EEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccccc
Q psy11524        209 VY-DLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSL  286 (323)
Q Consensus       209 v~-~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~~  286 (323)
                      +. +..+. ++..+++++.++ ++.||.++|+.+..  +..+.    ...++|++    +.+.+...++.+..|+..++.
T Consensus        83 ~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~--~~~~~----~~~~~p~~----~~v~~~~~dg~v~a~d~~tG~  151 (369)
T 2hz6_A           83 VQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT--LSSAF----ADSLSPST----SLLYLGRTEYTITMYDTKTRE  151 (369)
T ss_dssp             HTTCSCC------CCCCEEEEEEEEECCC--------------------------------EEEEEEEEEEECCCSSSSS
T ss_pred             cccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE--ecCCC----cccccccC----CEEEEEecCCEEEEEECCCCC
Confidence            11 11111 344677888889 99999999998876  33332    13455655    666666666666666665421


Q ss_pred             --CCCCccceeEEEEeeCC---CeeEeeecCCeEEEEEe
Q psy11524        287 --DKPDTGSVYDLVWSSDA---TQIAGACANGSLLLGTI  320 (323)
Q Consensus       287 --~~~~~~~v~~~~~s~~g---~~l~s~~~dg~i~~~~l  320 (323)
                        ...........++++++   ..++.++.||.|+.|+.
T Consensus       152 ~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~  190 (369)
T 2hz6_A          152 LRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDS  190 (369)
T ss_dssp             CCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred             EEEeEecccccCccccCCccccceEEEECCCCEEEEEEC
Confidence              00000111223333332   56777888999988875

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.72  E-value=5.9e-06  Score=64.63  Aligned_cols=188  Identities=10%  Similarity=0.051  Sum_probs=114.1

Q ss_pred             cceeeecCCCCC--EEEEEEcCCCCeEEEEeeC-CeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEE-EcCCCc
Q psy11524         72 LSLCRTLNVSPP--VYSAAWSPDSNKVLLTQAK-SLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILS-GGEDCK  145 (323)
Q Consensus        72 ~~~~~~~~~~~~--v~~~~~sp~~~~l~~~~~~-~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~  145 (323)
                      .++.+++.|...  ...+.|+ ++..+.+++.+ ...|+.+|..+.  ...+.- ..........++++.|.. ...++.
T Consensus        31 ~~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l-~~~~FgeGit~~g~~ly~ltw~~~~  108 (262)
T 3nol_A           31 YQIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL-GKRYFGEGISDWKDKIVGLTWKNGL  108 (262)
T ss_dssp             EEEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC-CTTCCEEEEEEETTEEEEEESSSSE
T ss_pred             eEEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec-CCccceeEEEEeCCEEEEEEeeCCE
Confidence            456677777654  4889998 66544544443 247999998765  333322 233333222334444444 445788


Q ss_pred             eEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCCee-eecCC--CC---ccEEEEEEcCC
Q psy11524        146 YKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGWSH-SLDKP--DT---GSVYDLVWSND  217 (323)
Q Consensus       146 i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~-~~~~~--~~---~~v~~~~~~~~  217 (323)
                      +.   ++|.+ .+.+.++....   ....+++|++.|+.+.. +.|.++|..+..+ ....-  ..   ..++.+.|. +
T Consensus       109 v~---v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~  181 (262)
T 3nol_A          109 GF---VWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-D  181 (262)
T ss_dssp             EE---EEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             EE---EEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-C
Confidence            88   99995 66666665432   22334467777666654 5999999875432 22211  11   235567776 6


Q ss_pred             CCEEEEEecCc-EEEEEcCCCceeeeecCCCC----------ccceEEEEEccCCCCccceEEEEe
Q psy11524        218 ATQIAGACANV-IHIFDISSSSSSNVTAPLSH----------SHEITQLAVNQTGSLQERHVAFID  272 (323)
Q Consensus       218 ~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~~p~g~~~d~~l~~~~  272 (323)
                      |+..+..-.++ |.+.|.++++.+..+.+.+.          ....+.+||+|++    +.+.+-.
T Consensus       182 G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~----~~lfVTG  243 (262)
T 3nol_A          182 GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEH----HRLFVTG  243 (262)
T ss_dssp             TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTT----TEEEEEE
T ss_pred             CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCC----CEEEEEC
Confidence            75444444566 99999999998887544321          2355889999988    5555543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.71  E-value=2.5e-06  Score=66.75  Aligned_cols=182  Identities=12%  Similarity=0.061  Sum_probs=106.7

Q ss_pred             ccCCC--eEEEEECCCCCEEEEEcCCC--ceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeC-C-eEEEE
Q psy11524        120 AHDGL--ILKVAWCSSTDLILSGGEDC--KYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-N-TLRLC  192 (323)
Q Consensus       120 ~~~~~--v~~~~~~~~~~~l~~~~~d~--~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~  192 (323)
                      .|...  ...+.|+ ++.++.+.+.+|  .|+   ++|++ ++.+..+.- ..........+++..|..... + .+.+|
T Consensus        38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~---~vD~~Tgkv~~~~~l-~~~~FgeGit~~g~~ly~ltw~~~~v~v~  112 (262)
T 3nol_A           38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIR---KVDIESGKTLQQIEL-GKRYFGEGISDWKDKIVGLTWKNGLGFVW  112 (262)
T ss_dssp             ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEE---EECTTTCCEEEEEEC-CTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred             cCCCCcccceEEEE-CCEEEEECCCCCCceEE---EEECCCCcEEEEEec-CCccceeEEEEeCCEEEEEEeeCCEEEEE
Confidence            45444  3788998 676667777665  888   99996 555555543 344444444445667777775 4 99999


Q ss_pred             eCCCCe-eeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccc---eEEEEEccCCC-----
Q psy11524        193 DKVGWS-HSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHE---ITQLAVNQTGS-----  262 (323)
Q Consensus       193 d~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~~p~g~-----  262 (323)
                      |..+.. +..+.. ..  ....++++++.|+.+...+ |.++|..+.+.+.++.......+   ++.+.|. +|+     
T Consensus       113 D~~t~~~~~ti~~-~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~  188 (262)
T 3nol_A          113 NIRNLRQVRSFNY-DG--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANV  188 (262)
T ss_dssp             ETTTCCEEEEEEC-SS--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             ECccCcEEEEEEC-CC--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEE
Confidence            987543 333321 22  2233445777777776667 99999999988887534322223   3456665 442     


Q ss_pred             CccceEEEEeCCCCeE--EEeccccc-----CCCCccceeEEEEeeCCCeeEeee
Q psy11524        263 LQERHVAFIDKNRDLY--LSMWSHSL-----DKPDTGSVYDLVWSSDATQIAGAC  310 (323)
Q Consensus       263 ~~d~~l~~~~~~~~~~--~~~~~~~~-----~~~~~~~v~~~~~s~~g~~l~s~~  310 (323)
                      ..++.|...|......  .+++....     ........+.+||+|+++.|+..+
T Consensus       189 w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          189 WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            1223444444433222  23332211     011134679999999987666554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.70  E-value=9.2e-05  Score=62.45  Aligned_cols=222  Identities=11%  Similarity=0.030  Sum_probs=134.6

Q ss_pred             EEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEE-cCCCceEeeeEEeCCCCeeeEe
Q psy11524         85 YSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSG-GEDCKYKASFVWDTDGRQLYSS  162 (323)
Q Consensus        85 ~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~i~v~d~~~~~~~~~  162 (323)
                      .|.+..+ ..+|+++...  .|+..+..+. ...+......+..++|.+.+..|+.+ ...+.|.   .+++++.....+
T Consensus        80 ~C~~~~~-~~~l~~~~~~--~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~---r~~~~g~~~~~~  153 (386)
T 3v65_B           80 SCKALGP-EPVLLFANRI--DIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRIL---RANLNGSNVEEV  153 (386)
T ss_dssp             CEEECSS-CCEEEEECBS--CEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEE---EEETTSCCEEEE
T ss_pred             eECCccc-cceeEeecCc--cceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEE---EEecCCCCcEEE
Confidence            3445555 4455555443  5666776654 33333444567899999866555544 4567788   999987655444


Q ss_pred             ec-CCCceeEEEEecCCCEEEEEeC-C-eEEEEeCCCCeee-ecCCCCccEEEEEEcCCCCEEEEEe-cC-c-EEEEEcC
Q psy11524        163 LT-HDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSHS-LDKPDTGSVYDLVWSNDATQIAGAC-AN-V-IHIFDIS  235 (323)
Q Consensus       163 ~~-~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~-i~iwd~~  235 (323)
                      .. .......+++++.+..|+.+.. . .|.+.++.+.... ...........++++|.+..|+... .. + |..+++.
T Consensus       154 ~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d  233 (386)
T 3v65_B          154 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  233 (386)
T ss_dssp             ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence            32 2345678999987666666655 4 8999998865433 3333345689999999766665554 34 5 8888876


Q ss_pred             CCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCC-CeEEEecccc----cCCCCccceeEEEEeeCCCeeEeee
Q psy11524        236 SSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNR-DLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGAC  310 (323)
Q Consensus       236 ~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~-~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~  310 (323)
                      .......  ..........++|+|++    +.|.+.+... .+..+++...    +.........++++ ..+..+++-.
T Consensus       234 G~~~~~~--~~~~~~~PnGlavd~~~----~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~  306 (386)
T 3v65_B          234 GSGRRII--ADTHLFWPNGLTIDYAG----RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDW  306 (386)
T ss_dssp             SCSCEEE--ECSSCSCEEEEEEEGGG----TEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEET
T ss_pred             CCCcEEE--EECCCCCeeeEEEeCCC----CEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeC
Confidence            4433222  23334457899999887    6676666543 3444444331    11111334567777 4555555666


Q ss_pred             cCCeEEEEE
Q psy11524        311 ANGSLLLGT  319 (323)
Q Consensus       311 ~dg~i~~~~  319 (323)
                      ..+.|..++
T Consensus       307 ~~~~V~~~~  315 (386)
T 3v65_B          307 HTKSINSAN  315 (386)
T ss_dssp             TTTEEEEEE
T ss_pred             CCCeEEEEE
Confidence            677777665

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.68  E-value=3.5e-06  Score=69.27  Aligned_cols=176  Identities=8%  Similarity=-0.001  Sum_probs=112.3

Q ss_pred             CCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecC--------------------CCceeEEEEec-CCCEE
Q psy11524        123 GLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTH--------------------DHPISSLAWAP-GGDMF  181 (323)
Q Consensus       123 ~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~--------------------~~~v~~~~~~p-~~~~l  181 (323)
                      ....+++|.++++++.++..++.|.   .|+.++.....+...                    ...+..+++.+ +++ |
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l   94 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVI---KYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-L   94 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEE---EECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-E
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEE---EECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-E
Confidence            3456789999998788888889999   999876555444310                    13578899998 565 5


Q ss_pred             EEEeC-CeEEEEeCCCCeeeecCC-----CCccEEEEEEcC-CCCEEEEEec-----------------Cc-EEEEEcCC
Q psy11524        182 AVGSY-NTLRLCDKVGWSHSLDKP-----DTGSVYDLVWSN-DATQIAGACA-----------------NV-IHIFDISS  236 (323)
Q Consensus       182 ~~~~~-~~i~i~d~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~-----------------d~-i~iwd~~~  236 (323)
                      +++.. ..+..+|..+.....+..     .......+++.| +|+..++...                 ++ |..||..+
T Consensus        95 ~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            55544 478889977543322211     113478899999 9986665432                 36 88999876


Q ss_pred             CceeeeecCCCCccceEEEEEccCCCCccceEEEEeCC-CCeEEEecccc-------cCCCCccceeEEEEeeCCCeeEe
Q psy11524        237 SSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKN-RDLYLSMWSHS-------LDKPDTGSVYDLVWSSDATQIAG  308 (323)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~-~~~~~~~~~~~-------~~~~~~~~v~~~~~s~~g~~l~s  308 (323)
                      ++....   .........++++|++    +.+.+.+.. +.+..+++...       .... .+ ...+++.++|++.++
T Consensus       175 ~~~~~~---~~~~~~p~gia~~~dg----~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~-~g-P~gi~~d~~G~l~va  245 (322)
T 2fp8_A          175 KETTLL---LKELHVPGGAEVSADS----SFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI-PN-PGNIKRNADGHFWVS  245 (322)
T ss_dssp             TEEEEE---EEEESCCCEEEECTTS----SEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC-SS-EEEEEECTTSCEEEE
T ss_pred             CEEEEe---ccCCccCcceEECCCC----CEEEEEeCCCCeEEEEECCCCcCCccceEEeC-CC-CCCeEECCCCCEEEE
Confidence            654322   1112345678999998    667766543 45666665431       0011 12 678899999986666


Q ss_pred             eec
Q psy11524        309 ACA  311 (323)
Q Consensus       309 ~~~  311 (323)
                      ...
T Consensus       246 ~~~  248 (322)
T 2fp8_A          246 SSE  248 (322)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.68  E-value=1.7e-05  Score=67.90  Aligned_cols=230  Identities=10%  Similarity=0.078  Sum_probs=128.1

Q ss_pred             CCEEEEEEcCC--CCeEEEEeeCCeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCC---C-ceEeeeEEeC
Q psy11524         82 PPVYSAAWSPD--SNKVLLTQAKSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGED---C-KYKASFVWDT  154 (323)
Q Consensus        82 ~~v~~~~~sp~--~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~-~i~~i~v~d~  154 (323)
                      .....++|+|+  +..|+++... ..|+.++.... +..+.........++++++|+++++....   . .+.   ..+.
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~---~~~~  214 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIY---LFTR  214 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEE---EECG
T ss_pred             CCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEE---EEEC
Confidence            34678999995  5566666544 57888887444 55555555668999999999944443321   1 122   3443


Q ss_pred             CCCee--eEeecCCCceeEEEEec-CCCEEEEEeCC-eEEEEeCCCCee--eec-CCCCccEEEEEEcCCCCEEEEEecC
Q psy11524        155 DGRQL--YSSLTHDHPISSLAWAP-GGDMFAVGSYN-TLRLCDKVGWSH--SLD-KPDTGSVYDLVWSNDATQIAGACAN  227 (323)
Q Consensus       155 ~~~~~--~~~~~~~~~v~~~~~~p-~~~~l~~~~~~-~i~i~d~~~~~~--~~~-~~~~~~v~~~~~~~~~~~l~~~~~d  227 (323)
                      .+...  ..+. .......++++| +|.++++-..+ .|+.+|..+...  ... .........++|+|+|++|+.+...
T Consensus       215 ~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~  293 (433)
T 4hw6_A          215 ASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG  293 (433)
T ss_dssp             GGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT
T ss_pred             CCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC
Confidence            22111  1222 234567789999 56544443334 899999874332  221 1122334579999999977666654


Q ss_pred             -c-EEEEEcC--CCcee--eeec-CCC------------CccceEEEEE---------ccCCCCccceEEEEeCCC-CeE
Q psy11524        228 -V-IHIFDIS--SSSSS--NVTA-PLS------------HSHEITQLAV---------NQTGSLQERHVAFIDKNR-DLY  278 (323)
Q Consensus       228 -~-i~iwd~~--~~~~~--~~~~-~~~------------~~~~v~~~~~---------~p~g~~~d~~l~~~~~~~-~~~  278 (323)
                       + |+.++..  ++...  ..+. ..+            .-.....+++         .++     +.|.+.+..+ .+.
T Consensus       294 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~-----g~lyvaD~~n~~I~  368 (433)
T 4hw6_A          294 KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDE-----YDFYFCDRDSHTVR  368 (433)
T ss_dssp             TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCC-----EEEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCC-----CcEEEEECCCCEEE
Confidence             4 9998865  23211  1100 000            0123566888         444     3455554432 233


Q ss_pred             EEecccc------cC----CC----------CccceeEEEEe-eCCCeeEeeecCCeEEEEEee
Q psy11524        279 LSMWSHS------LD----KP----------DTGSVYDLVWS-SDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       279 ~~~~~~~------~~----~~----------~~~~v~~~~~s-~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      .++....      ..    .+          .-.....++++ ++|.++++-..+++|+..++.
T Consensus       369 ~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          369 VLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            3322110      00    00          01236789999 677777777778888888764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.67  E-value=5.2e-05  Score=59.56  Aligned_cols=198  Identities=8%  Similarity=0.060  Sum_probs=117.4

Q ss_pred             EeeccCCCeEEEEECCCCCEEE-EEcCCCceEeeeEEeCCCCeeeEeec-CCCceeEEEEecCCCEEEEEeCC-eEEEEe
Q psy11524        117 KWQAHDGLILKVAWCSSTDLIL-SGGEDCKYKASFVWDTDGRQLYSSLT-HDHPISSLAWAPGGDMFAVGSYN-TLRLCD  193 (323)
Q Consensus       117 ~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~i~v~d~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d  193 (323)
                      .+.+-...+..++|+|+++.|+ +...++.|.   ..|.+++.+..+.- .....-.+++.+++.++++.-.+ .+.+++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~---~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~   97 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIV---EMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVIS   97 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEE---EEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEE---EEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence            4455667899999999866554 566778888   99998777776642 23567889999888655543334 899988


Q ss_pred             CCCCe----eeec------CCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcC---CCceeeeecC-----CCCccceEE
Q psy11524        194 KVGWS----HSLD------KPDTGSVYDLVWSNDATQIAGACANV-IHIFDIS---SSSSSNVTAP-----LSHSHEITQ  254 (323)
Q Consensus       194 ~~~~~----~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~---~~~~~~~~~~-----~~~~~~v~~  254 (323)
                      +....    ....      .........++|+|.++.|.++.+.. ..+|.+.   ....+.....     ......+.+
T Consensus        98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~  177 (255)
T 3qqz_A           98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSG  177 (255)
T ss_dssp             ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCE
T ss_pred             cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCcee
Confidence            65321    1111      12344579999999998888888776 6666554   1111111000     112335688


Q ss_pred             EEEccCCC------CccceEEEEeCCCCe-EEEecccccCCC--CccceeEEEEeeCCCeeEeeecCCeEEEE
Q psy11524        255 LAVNQTGS------LQERHVAFIDKNRDL-YLSMWSHSLDKP--DTGSVYDLVWSSDATQIAGACANGSLLLG  318 (323)
Q Consensus       255 ~~~~p~g~------~~d~~l~~~~~~~~~-~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~s~~~dg~i~~~  318 (323)
                      ++++|...      ...+.|...+.++.+ ..+.+..+....  --.....|+|.++|+ |+..++-..++.+
T Consensus       178 l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f  249 (255)
T 3qqz_A          178 AEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRF  249 (255)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEE
T ss_pred             EEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEE
Confidence            99999763      222344444444442 222222111000  013568999999997 4544666655444

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.66  E-value=7.7e-05  Score=60.75  Aligned_cols=220  Identities=9%  Similarity=0.007  Sum_probs=124.2

Q ss_pred             ceeEeeEeccCCcceeeeeecc---ccccccceeeecCCCCCEEEEEEcCCCCeEEEEeeC-CeEEEEeCCCC-ceeEee
Q psy11524         45 GTVINYPISPYISVLHSYAASH---SWPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAK-SLVIKPLSPNN-KATKWQ  119 (323)
Q Consensus        45 ~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~-~~~v~~~~~~~-~~~~~~  119 (323)
                      .....+.++|++..+..-...+   .++...+....+........++++++|+.+++.... ...|..++... .+..+.
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~  111 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL  111 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEE
Confidence            3456788888875222111111   133333333333445678899999999965543322 23465555433 333322


Q ss_pred             c--cCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCe--eeEee---------cCCCceeEEEEecCCCEEEEEeC
Q psy11524        120 A--HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQ--LYSSL---------THDHPISSLAWAPGGDMFAVGSY  186 (323)
Q Consensus       120 ~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~--~~~~~---------~~~~~v~~~~~~p~~~~l~~~~~  186 (323)
                      .  .......++..+++..+++-..++.|.   ++|..+..  +....         ..-.....+  +|+++.|+++..
T Consensus       112 ~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~---~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~  186 (306)
T 2p4o_A          112 TLPDAIFLNGITPLSDTQYLTADSYRGAIW---LIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT  186 (306)
T ss_dssp             ECTTCSCEEEEEESSSSEEEEEETTTTEEE---EEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred             eCCCccccCcccccCCCcEEEEECCCCeEE---EEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence            1  122345566566555555555678777   88876432  21111         111234555  888888877776


Q ss_pred             -C-eEEEEeCCC-Cee---eecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEc-
Q psy11524        187 -N-TLRLCDKVG-WSH---SLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVN-  258 (323)
Q Consensus       187 -~-~i~i~d~~~-~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-  258 (323)
                       . .|..+|+.. ...   ..+. .......++++++|++.++....+ |.++|.. ++......+........+++|. 
T Consensus       187 ~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g  264 (306)
T 2p4o_A          187 EKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQ  264 (306)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEec
Confidence             4 999999764 111   1111 113467789999998766655566 9999965 6553211122223567899998 


Q ss_pred             --cCCCCccceEEEEeCCC
Q psy11524        259 --QTGSLQERHVAFIDKNR  275 (323)
Q Consensus       259 --p~g~~~d~~l~~~~~~~  275 (323)
                        |++    +.|.+.+..+
T Consensus       265 ~~~d~----~~LyVt~~~~  279 (306)
T 2p4o_A          265 TEGDC----TAIYVVTNGG  279 (306)
T ss_dssp             STTTT----TEEEEEECTT
T ss_pred             ccCCC----CEEEEECCCC
Confidence              787    7888776643

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.64  E-value=0.00031  Score=65.20  Aligned_cols=222  Identities=10%  Similarity=0.036  Sum_probs=140.0

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeec---------cCCCeEEEEECCCCCEEEEEcCCCceEeee
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQA---------HDGLILKVAWCSSTDLILSGGEDCKYKASF  150 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~  150 (323)
                      ...|.++...++|..-+ |..++ -|..++.... ...+..         ....|.++...++|+.|..|+.++.+.   
T Consensus       356 ~~~V~~i~~d~~g~lWi-Gt~~~-Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~---  430 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNLWI-GTNDG-GLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLS---  430 (795)
T ss_dssp             CSSEEEEEECTTSCEEE-EESSS-CEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEE---
T ss_pred             CCeeEEEEECCCCCEEE-EECCC-CeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCcee---
Confidence            45699999999887554 54553 4667776654 333321         235688998888888455667667788   


Q ss_pred             EEeCCCCeeeEeec-----CCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCeeeecCC-------CCccEEEEEEcCCC
Q psy11524        151 VWDTDGRQLYSSLT-----HDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLDKP-------DTGSVYDLVWSNDA  218 (323)
Q Consensus       151 v~d~~~~~~~~~~~-----~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~-------~~~~v~~~~~~~~~  218 (323)
                      .+|.++.....+..     ....|.++...++|++.+... +.+.+||..+........       ....|.++...++|
T Consensus       431 ~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g  509 (795)
T 4a2l_A          431 ILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK  509 (795)
T ss_dssp             EEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC
T ss_pred             EEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC
Confidence            99987655555542     235688999888887655544 668889987654443321       23568999999998


Q ss_pred             CEEEEEecCcEEEEEcCCCceeeeecC--C---CCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-------c
Q psy11524        219 TQIAGACANVIHIFDISSSSSSNVTAP--L---SHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-------L  286 (323)
Q Consensus       219 ~~l~~~~~d~i~iwd~~~~~~~~~~~~--~---~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-------~  286 (323)
                      +..+.. .+|+..||..+++. . +..  .   .....|.++...++|     .|.++... .+..++....       .
T Consensus       510 ~lWigt-~~Gl~~~~~~~~~~-~-~~~~~~~~~l~~~~i~~i~~d~~g-----~lWigT~~-Gl~~~d~~~~~~~~~~~~  580 (795)
T 4a2l_A          510 RLWIGG-EEGLSVFKQEGLDI-Q-KASILPVSNVTKLFTNCIYEASNG-----IIWVGTRE-GFYCFNEKDKQIKRYNTT  580 (795)
T ss_dssp             CEEEEE-SSCEEEEEEETTEE-E-ECCCSCSCGGGGSCEEEEEECTTS-----CEEEEESS-CEEEEETTTTEEEEECGG
T ss_pred             CEEEEe-CCceEEEeCCCCeE-E-EecCCCCCCCCCCeeEEEEECCCC-----CEEEEeCC-CceeECCCCCcEEEeCCC
Confidence            755544 44599999877665 2 101  1   123468888888876     45555443 4555554332       1


Q ss_pred             CCCCccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        287 DKPDTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       287 ~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      .......|.++...++|++.+++ .+| |..++
T Consensus       581 ~gl~~~~i~~i~~d~~g~lWi~t-~~G-l~~~~  611 (795)
T 4a2l_A          581 NGLPNNVVYGILEDSFGRLWLST-NRG-ISCFN  611 (795)
T ss_dssp             GTCSCSCEEEEEECTTSCEEEEE-TTE-EEEEE
T ss_pred             CCCchhheEEEEECCCCCEEEEc-CCc-eEEEc
Confidence            12234568889888888765554 444 34443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.63  E-value=3.9e-06  Score=76.16  Aligned_cols=218  Identities=11%  Similarity=0.022  Sum_probs=130.9

Q ss_pred             CCCeEEEEeeCCeEEEEeCCCCc--eeEeecc-C----CCeEE-EEECCCCCEEEEEcC------CCceEeeeEEeCC-C
Q psy11524         92 DSNKVLLTQAKSLVIKPLSPNNK--ATKWQAH-D----GLILK-VAWCSSTDLILSGGE------DCKYKASFVWDTD-G  156 (323)
Q Consensus        92 ~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~-~----~~v~~-~~~~~~~~~l~~~~~------d~~i~~i~v~d~~-~  156 (323)
                      ++..+++++.+ +.|+.+|..+.  +-.+... .    ..+.+ ...  .+..+++++.      ++.|.   .+|.+ +
T Consensus       127 ~~~~v~v~~~d-g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~---a~D~~tG  200 (677)
T 1kb0_A          127 WKGKVYVGAWD-GRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYIT---AYDAETG  200 (677)
T ss_dssp             ETTEEEEECTT-SEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEE---EEETTTC
T ss_pred             ECCEEEEEcCC-CEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEE---EEECCCC
Confidence            45667776655 58888887654  2233322 1    11111 111  2345555543      68888   99984 7


Q ss_pred             CeeeEeecCCCc--------------------------------eeEEEEecCCCEEEEEeCC-----------------
Q psy11524        157 RQLYSSLTHDHP--------------------------------ISSLAWAPGGDMFAVGSYN-----------------  187 (323)
Q Consensus       157 ~~~~~~~~~~~~--------------------------------v~~~~~~p~~~~l~~~~~~-----------------  187 (323)
                      +.+..+......                                ...++++|++..++.+..+                 
T Consensus       201 ~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~  280 (677)
T 1kb0_A          201 ERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNL  280 (677)
T ss_dssp             CEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred             cEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCe
Confidence            777666432211                                1357889988888877653                 


Q ss_pred             ---eEEEEeCCCCeee-e--cCCCC-------ccEEEEEEcCCC---CEEEEEecCc-EEEEEcCCCceeeeecCCCCc-
Q psy11524        188 ---TLRLCDKVGWSHS-L--DKPDT-------GSVYDLVWSNDA---TQIAGACANV-IHIFDISSSSSSNVTAPLSHS-  249 (323)
Q Consensus       188 ---~i~i~d~~~~~~~-~--~~~~~-------~~v~~~~~~~~~---~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~-  249 (323)
                         .|..+|.++.+.. .  ...|.       ....-+....+|   ..++.++.++ ++++|.++|+.+....+.... 
T Consensus       281 ~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~  360 (677)
T 1kb0_A          281 YLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNW  360 (677)
T ss_dssp             TTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS
T ss_pred             eeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCc
Confidence               3888998754333 2  11121       122233334477   6788899999 999999999987653222100 


Q ss_pred             --------cce------------------------EEEEEccCCC-----C-----------------------------
Q psy11524        250 --------HEI------------------------TQLAVNQTGS-----L-----------------------------  263 (323)
Q Consensus       250 --------~~v------------------------~~~~~~p~g~-----~-----------------------------  263 (323)
                              .++                        ..++++|++.     .                             
T Consensus       361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  440 (677)
T 1kb0_A          361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGW  440 (677)
T ss_dssp             EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTC
T ss_pred             ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccc
Confidence                    001                        1355666542     0                             


Q ss_pred             --------------ccceEEEEeCCCCeEEEecccccCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        264 --------------QERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       264 --------------~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                                    ..+.|..+|......+|....      ..++.+..++.++..++.++.||.+++|++.
T Consensus       441 ~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~------~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~  506 (677)
T 1kb0_A          441 NTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH------VSPWNGGTLTTAGNVVFQGTADGRLVAYHAA  506 (677)
T ss_dssp             CCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE------SSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             ccccccccccCCCCCccEEEEEeCCCCcEEeecCC------CCCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence                          014566677766667777654      3445556677788889999999999999864

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.63  E-value=0.00013  Score=60.57  Aligned_cols=224  Identities=11%  Similarity=0.030  Sum_probs=134.5

Q ss_pred             CEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEE-cCCCceEeeeEEeCCCCeee
Q psy11524         83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSG-GEDCKYKASFVWDTDGRQLY  160 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~i~v~d~~~~~~~  160 (323)
                      ..+|.+..+ ..+|+++...  .|+..+..+. ...+......+..++|++.+..|+.+ ...+.|.   .+++++....
T Consensus        35 ~~~C~~~~~-~~~ll~~~~~--~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~---r~~~~g~~~~  108 (349)
T 3v64_C           35 RRSCKALGP-EPVLLFANRI--DIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRIL---RANLNGSNVE  108 (349)
T ss_dssp             SSCEEESSS-CCEEEEECBS--CEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEE---EEETTSCSCE
T ss_pred             CCccccccc-CceeEeeccc--ceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceE---EEecCCCCce
Confidence            345556666 4456555443  4666676654 33333344567899999866655554 4567788   9999766554


Q ss_pred             Eeec-CCCceeEEEEecCCCEEEEEeC-C-eEEEEeCCCCeee-ecCCCCccEEEEEEcCCCCEEEEEe-cC-c-EEEEE
Q psy11524        161 SSLT-HDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSHS-LDKPDTGSVYDLVWSNDATQIAGAC-AN-V-IHIFD  233 (323)
Q Consensus       161 ~~~~-~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~-i~iwd  233 (323)
                      .+.. .......+++.+.+..|+.+.. . .|.+.++.+.... .....-.....++++|.+..|+... .. + |..++
T Consensus       109 ~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~  188 (349)
T 3v64_C          109 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  188 (349)
T ss_dssp             EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence            4432 2345678999986666666555 3 9999998865433 3333345689999999665555444 44 6 88888


Q ss_pred             cCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCC-CeEEEecccc----cCCCCccceeEEEEeeCCCeeEe
Q psy11524        234 ISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNR-DLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAG  308 (323)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~-~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s  308 (323)
                      +.... ...+ ..........++++|++    +.|.+.+... .+..+++...    +.........++++ .++..+++
T Consensus       189 ~dG~~-~~~~-~~~~~~~PnGla~d~~~----~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~t  261 (349)
T 3v64_C          189 MDGSG-RRII-ADTHLFWPNGLTIDYAG----RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWT  261 (349)
T ss_dssp             TTSCS-CEES-CCSSCSCEEEEEEETTT----TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEE
T ss_pred             CCCCC-cEEE-EECCCCCcceEEEeCCC----CEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEe
Confidence            76433 3321 22334467899999987    6666666543 3444444331    11111344567777 35555555


Q ss_pred             eecCCeEEEEE
Q psy11524        309 ACANGSLLLGT  319 (323)
Q Consensus       309 ~~~dg~i~~~~  319 (323)
                      -...+.|...+
T Consensus       262 d~~~~~V~~~~  272 (349)
T 3v64_C          262 DWHTKSINSAN  272 (349)
T ss_dssp             ETTTTEEEEEE
T ss_pred             cCCCCeEEEEE
Confidence            55666666654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.59  E-value=1.5e-05  Score=62.47  Aligned_cols=176  Identities=9%  Similarity=0.039  Sum_probs=103.5

Q ss_pred             eEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeC-C-eEEEEeCCCCeee-
Q psy11524        125 ILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSHS-  200 (323)
Q Consensus       125 v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~~-  200 (323)
                      ...+.|+ ++.+..+.+.+|.|+   ++|++ ++.+..+  ...........+++..|..... + .+.+||..+.... 
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~---~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~  130 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLR---QLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRER  130 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEE---ECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEE---EEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEE
Confidence            4688887 466777888889999   99996 5555555  3334444333445666666665 4 9999998865433 


Q ss_pred             ecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccc---eEEEEEccCCC-----CccceEEEE
Q psy11524        201 LDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHE---ITQLAVNQTGS-----LQERHVAFI  271 (323)
Q Consensus       201 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~~p~g~-----~~d~~l~~~  271 (323)
                      .+. ....-..+  +++++.|+.+..++ |.++|..+.+.+.++.......+   ++.+.|. +|+     ...+.|...
T Consensus       131 ti~-~~~eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vI  206 (268)
T 3nok_A          131 TTR-YSGEGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEI  206 (268)
T ss_dssp             EEE-CSSCCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEE
T ss_pred             EEe-CCCceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEE
Confidence            332 22222333  35678888877677 99999999998887544333332   3556665 442     122344444


Q ss_pred             eCCCCe--EEEeccccc------CCCCccceeEEEEeeCCCeeEeee
Q psy11524        272 DKNRDL--YLSMWSHSL------DKPDTGSVYDLVWSSDATQIAGAC  310 (323)
Q Consensus       272 ~~~~~~--~~~~~~~~~------~~~~~~~v~~~~~s~~g~~l~s~~  310 (323)
                      |.....  ..+++....      ........+.+||+|+++.|+..+
T Consensus       207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            443321  223332110      111134679999999877555444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.59  E-value=1.6e-05  Score=73.18  Aligned_cols=185  Identities=9%  Similarity=0.050  Sum_probs=104.5

Q ss_pred             CeEEEEEC-CCCCEEEEEcC-CC----ceEeeeEEeCCCC-eeeEeecCCCceeEEEEecCCCEEEEEeCC------eEE
Q psy11524        124 LILKVAWC-SSTDLILSGGE-DC----KYKASFVWDTDGR-QLYSSLTHDHPISSLAWAPGGDMFAVGSYN------TLR  190 (323)
Q Consensus       124 ~v~~~~~~-~~~~~l~~~~~-d~----~i~~i~v~d~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~------~i~  190 (323)
                      .+...+|| |||++||.+.. +|    .|+   ++|+++. .... ........+++|+|||+.|+....+      .|+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~---v~dl~~g~~~l~-~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~  250 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIE---FKRISDPSQTIA-DKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVW  250 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEE---EEETTCTTCCCC-CCEEEECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEE---EEECCCCCEeCC-ccccCceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence            57889999 99998886543 23    366   9999754 3211 0011123568999999887776542      577


Q ss_pred             EEeCCCCe---eeec-CCCCccEEEEEEcCCCCEEEEEec---Cc-EEEEEcCCCc-ee--eeecCCCCccceEEEEEcc
Q psy11524        191 LCDKVGWS---HSLD-KPDTGSVYDLVWSNDATQIAGACA---NV-IHIFDISSSS-SS--NVTAPLSHSHEITQLAVNQ  259 (323)
Q Consensus       191 i~d~~~~~---~~~~-~~~~~~v~~~~~~~~~~~l~~~~~---d~-i~iwd~~~~~-~~--~~~~~~~~~~~v~~~~~~p  259 (323)
                      ++++.+..   .... .........+.|+|||++|+..+.   .. |+++|+.++. ..  ..+ .........++.|+.
T Consensus       251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l-~~~~~~~~~s~~~~~  329 (751)
T 2xe4_A          251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV-RPREKGVRYDVQMHG  329 (751)
T ss_dssp             EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES-SCCCTTCCEEEEEET
T ss_pred             EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe-ecCCCCceEEEeeee
Confidence            88876532   1222 223345678899999999887653   23 8999988762 12  221 233344555565544


Q ss_pred             CCCCccceEEEEeCC--CC--eEEEeccc-c---c-CCCCcc--ceeEEEEeeCCC-eeEeeecCCeEEEEE
Q psy11524        260 TGSLQERHVAFIDKN--RD--LYLSMWSH-S---L-DKPDTG--SVYDLVWSSDAT-QIAGACANGSLLLGT  319 (323)
Q Consensus       260 ~g~~~d~~l~~~~~~--~~--~~~~~~~~-~---~-~~~~~~--~v~~~~~s~~g~-~l~s~~~dg~i~~~~  319 (323)
                      .+    ..+.+.+.+  +.  +..+++.. .   . .-.+..  .+..+++  .++ ++++...+|..++|-
T Consensus       330 g~----~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          330 TS----HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             TT----EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEE
T ss_pred             CC----EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEE
Confidence            32    333333333  22  33444432 1   1 111222  3445554  444 555777788766654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.59  E-value=2e-05  Score=61.71  Aligned_cols=182  Identities=9%  Similarity=0.013  Sum_probs=112.8

Q ss_pred             ceeeecCCCC--CEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCe--EEEEECCCCCEEEEEcCCCce
Q psy11524         73 SLCRTLNVSP--PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLI--LKVAWCSSTDLILSGGEDCKY  146 (323)
Q Consensus        73 ~~~~~~~~~~--~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d~~i  146 (323)
                      ++.+++.|..  ....+.|+  ++.|..+....+.|+.+|..+.  ...+  -....  ..+++.. ++.......++.+
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g-~~Ly~ltw~~~~v  118 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDG-ERLYQLTWTEGLL  118 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECS-SCEEEEESSSCEE
T ss_pred             EEEEEEcCCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeC-CEEEEEEccCCEE
Confidence            5566676654  45789997  3566666555568999998765  3333  22233  3355543 2444445568888


Q ss_pred             EeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCCeee-ecCC--CC---ccEEEEEEcCCC
Q psy11524        147 KASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGWSHS-LDKP--DT---GSVYDLVWSNDA  218 (323)
Q Consensus       147 ~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~~-~~~~--~~---~~v~~~~~~~~~  218 (323)
                      .   +||.+ .+.+.++... ..-..++  +|++.|+.+.. +.|.++|..+..+. ...-  ..   ..+..+.|. +|
T Consensus       119 ~---V~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG  191 (268)
T 3nok_A          119 F---TWSGMPPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG  191 (268)
T ss_dssp             E---EEETTTTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred             E---EEECCcCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC
Confidence            8   99996 5566666543 2223444  56777766654 49999998764332 2211  21   235677877 77


Q ss_pred             CEEEEEecCc-EEEEEcCCCceeeeecCCC-----------CccceEEEEEccCCCCccceEEE
Q psy11524        219 TQIAGACANV-IHIFDISSSSSSNVTAPLS-----------HSHEITQLAVNQTGSLQERHVAF  270 (323)
Q Consensus       219 ~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~~p~g~~~d~~l~~  270 (323)
                      +..+..-.+. |.+.|.++++.+..+.+.+           .....+.+|++|++    +.+.+
T Consensus       192 ~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~----~rlfV  251 (268)
T 3nok_A          192 VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGS----GRIFM  251 (268)
T ss_dssp             EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTT----CCEEE
T ss_pred             EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCC----CEEEE
Confidence            5444444566 9999999999888754321           12356889999987    45554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.57  E-value=0.00048  Score=63.92  Aligned_cols=223  Identities=9%  Similarity=0.048  Sum_probs=141.9

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeec--------cCCCeEEEEECCCCCEEEEEcCCCceEeeeE
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQA--------HDGLILKVAWCSSTDLILSGGEDCKYKASFV  151 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v  151 (323)
                      ...|.++...++|...+ |... | |..++.... ...+..        ....|.++...++|.+. .|+.++-|.   .
T Consensus       262 ~~~i~~i~~d~~g~lWi-gt~~-G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~---~  334 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWI-GTFN-D-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLN---Y  334 (795)
T ss_dssp             CSBEEEEEECTTSCEEE-EESS-C-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEE---E
T ss_pred             CCeEEEEEEcCCCCEEE-EeCC-h-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeE---E
Confidence            35699999999887665 4344 3 666776544 323321        23569999999888755 456666677   8


Q ss_pred             EeCCCCeeeEeec-------CCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCCeeeecC-C--------CCccEEEEEE
Q psy11524        152 WDTDGRQLYSSLT-------HDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGWSHSLDK-P--------DTGSVYDLVW  214 (323)
Q Consensus       152 ~d~~~~~~~~~~~-------~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~~~~~-~--------~~~~v~~~~~  214 (323)
                      ++........+..       ....|.++...++|.+. .|+. +-|..||..+....... .        ....|.++..
T Consensus       335 ~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~  413 (795)
T 4a2l_A          335 YHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYV  413 (795)
T ss_dssp             ECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEE
T ss_pred             eCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEE
Confidence            8875444333321       23458899988888755 4565 48999998755433221 1        1356899999


Q ss_pred             cCCCCEEEEEecCc-EEEEEcCCCceeeeecCC---CCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----c
Q psy11524        215 SNDATQIAGACANV-IHIFDISSSSSSNVTAPL---SHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----L  286 (323)
Q Consensus       215 ~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~  286 (323)
                      .++|+.|..|+.++ |..||..+++..... ..   .....|.++...++|     .|.++.. +.+..++....    .
T Consensus       414 d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~-~~~~~l~~~~v~~i~~d~~g-----~lwigt~-~Gl~~~~~~~~~~~~~  486 (795)
T 4a2l_A          414 DEKKSLVYIGTHAGGLSILHRNSGQVENFN-QRNSQLVNENVYAILPDGEG-----NLWLGTL-SALVRFNPEQRSFTTI  486 (795)
T ss_dssp             ETTTTEEEEEETTTEEEEEETTTCCEEEEC-TTTSCCSCSCEEEEEECSSS-----CEEEEES-SCEEEEETTTTEEEEC
T ss_pred             cCCCCEEEEEeCcCceeEEeCCCCcEEEee-cCCCCcCCCeeEEEEECCCC-----CEEEEec-CceeEEeCCCCeEEEc
Confidence            99988567777767 999998887654421 10   123578888887775     5556555 45666665432    1


Q ss_pred             C------CCCccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        287 D------KPDTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       287 ~------~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      .      ..+...|.++...++|+..+... +| +..|+.
T Consensus       487 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G-l~~~~~  524 (795)
T 4a2l_A          487 EKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG-LSVFKQ  524 (795)
T ss_dssp             CBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC-EEEEEE
T ss_pred             cccccccccCCceEEEEEECCCCCEEEEeC-Cc-eEEEeC
Confidence            0      12246789999998887655443 44 566654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.56  E-value=0.00012  Score=63.14  Aligned_cols=151  Identities=10%  Similarity=0.052  Sum_probs=95.8

Q ss_pred             CEEEEEEcC-CCCeEEEEeeCCeEEEEeCCCCc-eeEeecc----CCCeEEEEE-------CCCCCEEEEEcCCC-c---
Q psy11524         83 PVYSAAWSP-DSNKVLLTQAKSLVIKPLSPNNK-ATKWQAH----DGLILKVAW-------CSSTDLILSGGEDC-K---  145 (323)
Q Consensus        83 ~v~~~~~sp-~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~----~~~v~~~~~-------~~~~~~l~~~~~d~-~---  145 (323)
                      ....|+|+| ++..|+++......|++.|..++ +..+...    ......++|       +++|+.|+++...+ .   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            578999999 46677777666668998988775 4444322    235899999       99998666666544 2   


Q ss_pred             eEeeeEEeCCC--Cee-----eEeecCCCceeEEEEecCCCEEEEEeC-C-eEEEEeCC-------CCee----------
Q psy11524        146 YKASFVWDTDG--RQL-----YSSLTHDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKV-------GWSH----------  199 (323)
Q Consensus       146 i~~i~v~d~~~--~~~-----~~~~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~-------~~~~----------  199 (323)
                      -..+++.+...  ...     ..+.. ......++++|++..|+++.. + .|+.+|+.       +...          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence            11233665432  221     22222 234567899996666666655 4 89999976       3322          


Q ss_pred             ---e-ecCCCCccEEEEEEcCCCCEEEEEecC-c-EEEEEc
Q psy11524        200 ---S-LDKPDTGSVYDLVWSNDATQIAGACAN-V-IHIFDI  234 (323)
Q Consensus       200 ---~-~~~~~~~~v~~~~~~~~~~~l~~~~~d-~-i~iwd~  234 (323)
                         . ...+.....+.++|+|+|++|+.+... . |+.++.
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence               1 112233457899999999976666554 4 888664

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.53  E-value=0.00023  Score=58.18  Aligned_cols=214  Identities=7%  Similarity=-0.047  Sum_probs=125.2

Q ss_pred             eEEEEeeCCeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEE-cCCCceEeeeEEeCCC----CeeeEee-cCCC
Q psy11524         95 KVLLTQAKSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSG-GEDCKYKASFVWDTDG----RQLYSSL-THDH  167 (323)
Q Consensus        95 ~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~i~v~d~~~----~~~~~~~-~~~~  167 (323)
                      +|+++...  .|+..++... ...+......+.+++|++++..|+.+ ...+.|.   .+++++    .....+. ....
T Consensus         3 ~ll~~~~~--~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~---~~~~~g~~~~~~~~~~~~~~~~   77 (316)
T 1ijq_A            3 YLFFTNRH--EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMIC---STQLDRAHGVSSYDTVISRDIQ   77 (316)
T ss_dssp             EEEEECBS--SEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEE---EEEC--------CEEEECSSCS
T ss_pred             EEEEECCC--eEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEE---EEECCCCCCCcccEEEEeCCCC
Confidence            45665544  3566666554 33333345567899999876555544 4568888   999875    3333332 2234


Q ss_pred             ceeEEEEecCCCEEEEEeC-C-eEEEEeCCCCeee-ecCCCCccEEEEEEcCCCCEEEEEec-C-c-EEEEEcCCCceee
Q psy11524        168 PISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSHS-LDKPDTGSVYDLVWSNDATQIAGACA-N-V-IHIFDISSSSSSN  241 (323)
Q Consensus       168 ~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~-i~iwd~~~~~~~~  241 (323)
                      ....+++++.+..|+.+.. . .|.++|+.+.... ...........++++|.+..|+.+.. . + |...++.. ....
T Consensus        78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~  156 (316)
T 1ijq_A           78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIY  156 (316)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEE
T ss_pred             CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeE
Confidence            5688999986666665554 4 9999998875433 22223456899999996666655543 3 5 88888653 3333


Q ss_pred             eecCCCCccceEEEEEccCCCCccceEEEEeCCC-CeEEEecccc----cCC--CCccceeEEEEeeCCCeeEeeecCCe
Q psy11524        242 VTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNR-DLYLSMWSHS----LDK--PDTGSVYDLVWSSDATQIAGACANGS  314 (323)
Q Consensus       242 ~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~-~~~~~~~~~~----~~~--~~~~~v~~~~~s~~g~~l~s~~~dg~  314 (323)
                      .+ ....-.....++++|++    +.|...+... .+..+++...    +..  .......++++. .+..+++-...+.
T Consensus       157 ~~-~~~~~~~P~gla~d~~~----~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~  230 (316)
T 1ijq_A          157 SL-VTENIQWPNGITLDLLS----GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA  230 (316)
T ss_dssp             EE-ECSSCSCEEEEEEETTT----TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE
T ss_pred             EE-EECCCCCceEEEEeccC----CEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCe
Confidence            21 22233567899999987    5666665432 3445554331    100  012345677774 4555556666677


Q ss_pred             EEEEEe
Q psy11524        315 LLLGTI  320 (323)
Q Consensus       315 i~~~~l  320 (323)
                      |..++.
T Consensus       231 V~~~~~  236 (316)
T 1ijq_A          231 IFSANR  236 (316)
T ss_dssp             EEEEET
T ss_pred             EEEEeC
Confidence            777653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.52  E-value=0.00023  Score=60.03  Aligned_cols=173  Identities=10%  Similarity=-0.035  Sum_probs=114.0

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEe-eccCCCeEEEEECCCCCEE-EEEcCCCceEeeeEEeCCC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKW-QAHDGLILKVAWCSSTDLI-LSGGEDCKYKASFVWDTDG  156 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~i~v~d~~~  156 (323)
                      .......++|++.+..|+.+....+.|+.++..+. ...+ .........+++.+.+..| ++-...+.|.   +.++++
T Consensus       114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~---~~~~dg  190 (386)
T 3v65_B          114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIE---VANLDG  190 (386)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEE---ECBTTS
T ss_pred             CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEE---EEeCCC
Confidence            45568899999988888887766678888887765 3333 2223345678888755544 4555567788   999886


Q ss_pred             CeeeEeec-CCCceeEEEEecCCCEEEEEeC---CeEEEEeCCCCeeee-cCCCCccEEEEEEcCCCCEEEEEecC-c-E
Q psy11524        157 RQLYSSLT-HDHPISSLAWAPGGDMFAVGSY---NTLRLCDKVGWSHSL-DKPDTGSVYDLVWSNDATQIAGACAN-V-I  229 (323)
Q Consensus       157 ~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~---~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d-~-i  229 (323)
                      .....+.. .......++++|.+..|+.+..   +.|..+++.+..... ....-.....++++|++..|+.+... + |
T Consensus       191 ~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I  270 (386)
T 3v65_B          191 AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI  270 (386)
T ss_dssp             CSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEE
T ss_pred             CceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEE
Confidence            65544433 3356789999997777666655   278888888654333 22334568899999877777666554 4 9


Q ss_pred             EEEEcCCCceeeeecCCCCccceEEEEE
Q psy11524        230 HIFDISSSSSSNVTAPLSHSHEITQLAV  257 (323)
Q Consensus       230 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~  257 (323)
                      ..+|+........  +.........+++
T Consensus       271 ~~~d~dG~~~~~~--~~~~~~~P~giav  296 (386)
T 3v65_B          271 ERANLDGSHRKAV--ISQGLPHPFAITV  296 (386)
T ss_dssp             EEECTTSCSCEEE--ECSSCSSEEEEEE
T ss_pred             EEEeCCCCeeEEE--EECCCCCceEEEE
Confidence            9999765433222  2223344566776

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.50  E-value=1.8e-05  Score=72.06  Aligned_cols=218  Identities=11%  Similarity=0.063  Sum_probs=127.0

Q ss_pred             CCeEEEEeeCCeEEEEeCCCCce--eEeec--cCCCeEEEEECC---CCCEEEEEc------CCCceEeeeEEeCC-CCe
Q psy11524         93 SNKVLLTQAKSLVIKPLSPNNKA--TKWQA--HDGLILKVAWCS---STDLILSGG------EDCKYKASFVWDTD-GRQ  158 (323)
Q Consensus        93 ~~~l~~~~~~~~~v~~~~~~~~~--~~~~~--~~~~v~~~~~~~---~~~~l~~~~------~d~~i~~i~v~d~~-~~~  158 (323)
                      +..+++++.+ +.|+.+|..+..  -.+..  +......+..+|   ++ .+++++      .++.|.   .||.+ ++.
T Consensus       121 ~g~v~v~~~d-g~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~---a~D~~tG~~  195 (689)
T 1yiq_A          121 KGKVYVGVLD-GRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVT---AYDAETGKE  195 (689)
T ss_dssp             TTEEEEECTT-SEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEE---EEETTTCCE
T ss_pred             CCEEEEEccC-CEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEE---EEECCCCcE
Confidence            5567766655 588888876552  22221  111111111122   34 444443      267888   99984 777


Q ss_pred             eeEeecCC-------------------------------CceeEEEEecCCCEEEEEeCC-e------------------
Q psy11524        159 LYSSLTHD-------------------------------HPISSLAWAPGGDMFAVGSYN-T------------------  188 (323)
Q Consensus       159 ~~~~~~~~-------------------------------~~v~~~~~~p~~~~l~~~~~~-~------------------  188 (323)
                      +..+....                               .....++++|++..++++..+ .                  
T Consensus       196 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~  275 (689)
T 1yiq_A          196 AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLS  275 (689)
T ss_dssp             EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTT
T ss_pred             EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence            76654211                               011257889988888887764 3                  


Q ss_pred             -EEEEeCCCCeee-ecC--CCC-------ccEEEEEEcCCCC---EEEEEecCc-EEEEEcCCCceeeeecCCCCc----
Q psy11524        189 -LRLCDKVGWSHS-LDK--PDT-------GSVYDLVWSNDAT---QIAGACANV-IHIFDISSSSSSNVTAPLSHS----  249 (323)
Q Consensus       189 -i~i~d~~~~~~~-~~~--~~~-------~~v~~~~~~~~~~---~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~----  249 (323)
                       |..+|.++.+.. ...  .|.       ..+.......+|+   .++.++.+| ++++|.++|+.+....+....    
T Consensus       276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~  355 (689)
T 1yiq_A          276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKG  355 (689)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccc
Confidence             899998754333 221  121       1222223333665   788889999 999999999987432111100    


Q ss_pred             ---------------------------------cceEEEEEccCCC-------------------------------C--
Q psy11524        250 ---------------------------------HEITQLAVNQTGS-------------------------------L--  263 (323)
Q Consensus       250 ---------------------------------~~v~~~~~~p~g~-------------------------------~--  263 (323)
                                                       ..-..++++|+..                               .  
T Consensus       356 ~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  435 (689)
T 1yiq_A          356 MDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR  435 (689)
T ss_dssp             EETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred             cCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcc
Confidence                                             0001245555432                               0  


Q ss_pred             -----------------ccceEEEEeCCCCeEEEecccccCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        264 -----------------QERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       264 -----------------~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                                       .++.|..+|......+|....      ..+...-.++..+.+++.++.||.++.||..
T Consensus       436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~------~~~~~~g~~~tagglvf~gt~dg~l~a~D~~  504 (689)
T 1yiq_A          436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY------VTIFNGGTLSTAGNLVFEGSADGRVIAYAAD  504 (689)
T ss_dssp             ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE------SSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC------CCCccCccceECCCEEEEECCCCcEEEEECC
Confidence                             025677788777777787765      3333444667788899999999999999863

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.48  E-value=7.7e-05  Score=57.82  Aligned_cols=182  Identities=13%  Similarity=0.105  Sum_probs=104.2

Q ss_pred             ccCC--CeEEEEECCCCCEEEEEcCC--CceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeC--CeEEEE
Q psy11524        120 AHDG--LILKVAWCSSTDLILSGGED--CKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY--NTLRLC  192 (323)
Q Consensus       120 ~~~~--~v~~~~~~~~~~~l~~~~~d--~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--~~i~i~  192 (323)
                      .|..  ....+.|++ +.+..+.+.+  ..|+   ++|++ ++.+..+. ...........+.+..|.....  +.+.+|
T Consensus        16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~---~vD~~tgkv~~~~~-l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~   90 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVR---KVDLETGRILQRAE-VPPPYFGAGIVAWRDRLIQLTWRNHEGFVY   90 (243)
T ss_dssp             ECCTTCCEEEEEEET-TEEEEEECCTTSCEEE---EEETTTCCEEEEEE-CCTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred             CCCCccccccEEEEC-CEEEEECCCCCCceEE---EEECCCCCEEEEEe-CCCCcceeEEEEeCCEEEEEEeeCCEEEEE
Confidence            4543  466899986 5566666664  4888   99996 55555443 2333433434444667776665  499999


Q ss_pred             eCCCCeee-ecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCcc---ceEEEEEccCCC-----
Q psy11524        193 DKVGWSHS-LDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSH---EITQLAVNQTGS-----  262 (323)
Q Consensus       193 d~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~~p~g~-----  262 (323)
                      |..+.... .+. ....-..+  .++++.|+.+..++ |.++|..+.+.+.++....+..   .++.+.|. +|+     
T Consensus        91 D~~tl~~~~ti~-~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv  166 (243)
T 3mbr_X           91 DLATLTPRARFR-YPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV  166 (243)
T ss_dssp             ETTTTEEEEEEE-CSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             ECCcCcEEEEEe-CCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence            98865433 332 22222333  35677777776677 9999999998887754433322   23445544 332     


Q ss_pred             CccceEEEEeCCCCe--EEEecccccC------CCCccceeEEEEeeCCCeeEeee
Q psy11524        263 LQERHVAFIDKNRDL--YLSMWSHSLD------KPDTGSVYDLVWSSDATQIAGAC  310 (323)
Q Consensus       263 ~~d~~l~~~~~~~~~--~~~~~~~~~~------~~~~~~v~~~~~s~~g~~l~s~~  310 (323)
                      ...+.|...|.....  ..+++.....      .......+.+|++|+++.|+..+
T Consensus       167 w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          167 WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            122344444543332  2333332111      11134679999999877665444

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.48  E-value=0.00036  Score=57.89  Aligned_cols=173  Identities=10%  Similarity=-0.044  Sum_probs=114.3

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEe-eccCCCeEEEEECCCCCE-EEEEcCCCceEeeeEEeCCC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKW-QAHDGLILKVAWCSSTDL-ILSGGEDCKYKASFVWDTDG  156 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~i~v~d~~~  156 (323)
                      ....+..++|++.+..|+.+....+.|+.++..+. ...+ .........+++.+.+.. ..+-...+.|.   +.++++
T Consensus        71 ~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~---~~~~dG  147 (349)
T 3v64_C           71 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIE---VANLDG  147 (349)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEE---EEETTS
T ss_pred             CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEE---EEcCCC
Confidence            44568899999988888887666678888887765 2332 222345578899875544 45555567888   999987


Q ss_pred             CeeeEee-cCCCceeEEEEecCCCEEEEEeC---CeEEEEeCCCCeeeecC-CCCccEEEEEEcCCCCEEEEEecC-c-E
Q psy11524        157 RQLYSSL-THDHPISSLAWAPGGDMFAVGSY---NTLRLCDKVGWSHSLDK-PDTGSVYDLVWSNDATQIAGACAN-V-I  229 (323)
Q Consensus       157 ~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~---~~i~i~d~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-~-i  229 (323)
                      .....+. ........++++|.+..|+....   +.|..+++.+.....+. ..-.....++++|++..|+.+... + |
T Consensus       148 ~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I  227 (349)
T 3v64_C          148 AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI  227 (349)
T ss_dssp             CSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEE
Confidence            6554443 33456789999997666666654   37888888875444332 234568899999977777766654 4 9


Q ss_pred             EEEEcCCCceeeeecCCCCccceEEEEE
Q psy11524        230 HIFDISSSSSSNVTAPLSHSHEITQLAV  257 (323)
Q Consensus       230 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~  257 (323)
                      ..+|+........  +.........+++
T Consensus       228 ~~~~~dG~~~~~~--~~~~~~~P~giav  253 (349)
T 3v64_C          228 ERANLDGSHRKAV--ISQGLPHPFAITV  253 (349)
T ss_dssp             EEEETTSCSCEEE--ECSSCSSEEEEEE
T ss_pred             EEEeCCCCceEEE--EeCCCCCceEEEE
Confidence            9999765433222  2222344566666

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.46  E-value=0.00095  Score=61.80  Aligned_cols=225  Identities=9%  Similarity=0.039  Sum_probs=138.2

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeec----------cCCCeEEEEECCCCCEEEEEcCCCceEee
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQA----------HDGLILKVAWCSSTDLILSGGEDCKYKAS  149 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~d~~i~~i  149 (323)
                      ...|.++...++|..-+ |..++ -|..++.... ...+..          ....|.++...++|.+. .|+.++-+.  
T Consensus       312 ~~~v~~i~~D~~g~lWi-gt~~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~--  386 (781)
T 3v9f_A          312 NASARYIFQDSFNNIWI-GTWGG-GINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGIN--  386 (781)
T ss_dssp             SSCEEEEEECSSCCEEE-EEBSS-CEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEE--
T ss_pred             CCeEEEEEEeCCCCEEE-EecCC-eEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEE--
Confidence            46799999999887544 55454 4555665543 222211          23568899888877654 455555677  


Q ss_pred             eEEeCCCCeeeEee----cCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCCeeeecC---CCCccEEEEEEcCCCCEE
Q psy11524        150 FVWDTDGRQLYSSL----THDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGWSHSLDK---PDTGSVYDLVWSNDATQI  221 (323)
Q Consensus       150 ~v~d~~~~~~~~~~----~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~~~~~---~~~~~v~~~~~~~~~~~l  221 (323)
                       .++........+.    .....|.++...++|.+.+ |+. +.+..+|..+.......   .....|.++...++|. |
T Consensus       387 -~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-l  463 (781)
T 3v9f_A          387 -VFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-I  463 (781)
T ss_dssp             -EEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-E
T ss_pred             -EEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-E
Confidence             8888644333321    1235688888888886554 565 48999998765544332   1345799999998886 4


Q ss_pred             EEEecCcEEEEEcCCCceeeeecCC---CCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-------cCCCCc
Q psy11524        222 AGACANVIHIFDISSSSSSNVTAPL---SHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-------LDKPDT  291 (323)
Q Consensus       222 ~~~~~d~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-------~~~~~~  291 (323)
                      ..++.+||..+|..+++........   .....|.++...++|     .|.++...+.+..++....       ......
T Consensus       464 wigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-----~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~  538 (781)
T 3v9f_A          464 WIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEG-----RFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCS  538 (781)
T ss_dssp             EEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTC-----CEEEEESSSCEEEECTTCCEEEEECTTTTCSC
T ss_pred             EEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCC-----CEEEEEcCCCEEEEeCCCCeEEEccCCCCCCC
Confidence            4455545999998876654321011   113578888888775     5666665455555554332       112234


Q ss_pred             cceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        292 GSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       292 ~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      ..|.++...++|++.++. .+|.+..|+
T Consensus       539 ~~i~~i~~d~~g~lWi~T-~~Glv~~~d  565 (781)
T 3v9f_A          539 NTINQIYRSSKGQMWLAT-GEGLVCFPS  565 (781)
T ss_dssp             SCEEEEEECTTSCEEEEE-TTEEEEESC
T ss_pred             CeeEEEEECCCCCEEEEE-CCCceEEEC
Confidence            678899988888755543 366535544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.40  E-value=0.00034  Score=54.22  Aligned_cols=186  Identities=9%  Similarity=-0.014  Sum_probs=109.8

Q ss_pred             ceeeecCCC--CCEEEEEEcCCCCeEEEEeeC-CeEEEEeCCCCc--eeEeeccCCCe--EEEEECCCCCEEEEEcCCCc
Q psy11524         73 SLCRTLNVS--PPVYSAAWSPDSNKVLLTQAK-SLVIKPLSPNNK--ATKWQAHDGLI--LKVAWCSSTDLILSGGEDCK  145 (323)
Q Consensus        73 ~~~~~~~~~--~~v~~~~~sp~~~~l~~~~~~-~~~v~~~~~~~~--~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d~~  145 (323)
                      ++.+++.|.  .....+.|++ +....+++.+ ...|+.+|..+.  ..... -....  ..++.. +++.......++.
T Consensus        10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~-l~~~~fgeGi~~~-~~~ly~ltw~~~~   86 (243)
T 3mbr_X           10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAE-VPPPYFGAGIVAW-RDRLIQLTWRNHE   86 (243)
T ss_dssp             EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEE-CCTTCCEEEEEEE-TTEEEEEESSSSE
T ss_pred             EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEe-CCCCcceeEEEEe-CCEEEEEEeeCCE
Confidence            455666664  4577999986 4444443332 247888888765  33332 22222  233433 2344444556888


Q ss_pred             eEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCCee-eecCC--CC---ccEEEEEEcCC
Q psy11524        146 YKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGWSH-SLDKP--DT---GSVYDLVWSND  217 (323)
Q Consensus       146 i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~-~~~~~--~~---~~v~~~~~~~~  217 (323)
                      +.   ++|.+ .+.+.++.... .-..++  +++..|+.+.. +.|.++|..+..+ ....-  +.   ..++.+.|. +
T Consensus        87 v~---v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~  159 (243)
T 3mbr_X           87 GF---VYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-N  159 (243)
T ss_dssp             EE---EEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             EE---EEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-C
Confidence            88   99996 55566665433 223444  56666665554 4999999876432 22211  11   245667766 6


Q ss_pred             CCEEEEEecCc-EEEEEcCCCceeeeecCCC-----------CccceEEEEEccCCCCccceEEEEe
Q psy11524        218 ATQIAGACANV-IHIFDISSSSSSNVTAPLS-----------HSHEITQLAVNQTGSLQERHVAFID  272 (323)
Q Consensus       218 ~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~~p~g~~~d~~l~~~~  272 (323)
                      |+..+..-.+. |.+.|.++++.+..+.+.+           .....+.++++|++    +.+.+-.
T Consensus       160 G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~----~~lfVTG  222 (243)
T 3mbr_X          160 GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEH----DRLFVTG  222 (243)
T ss_dssp             TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTT----TEEEEEE
T ss_pred             CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCC----CEEEEEC
Confidence            66444444556 9999999999887753321           12356889999987    5555533

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.37  E-value=0.0016  Score=60.34  Aligned_cols=221  Identities=9%  Similarity=-0.020  Sum_probs=132.2

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEe----eccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKW----QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD  155 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~  155 (323)
                      ...|.++...++|...+ |..+. -|..++.... ...+    ......|.++...++|.+.+ |+.++.+.   .++..
T Consensus       362 ~~~v~~i~~d~~g~lWi-gt~~~-Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~---~~~~~  435 (781)
T 3v9f_A          362 NKVVSSVCDDGQGKLWI-GTDGG-GINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNIS---YYNTR  435 (781)
T ss_dssp             SSCEEEEEECTTSCEEE-EEBSS-CEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEE---EECSS
T ss_pred             CcceEEEEEcCCCCEEE-EeCCC-cEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEE---EEcCC
Confidence            35799999998887554 54444 3666666543 2111    12345788998888777555 55556677   89887


Q ss_pred             CCeeeEeec---CCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCeeeec-CCC-----CccEEEEEEcCCCCEEEEEec
Q psy11524        156 GRQLYSSLT---HDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLD-KPD-----TGSVYDLVWSNDATQIAGACA  226 (323)
Q Consensus       156 ~~~~~~~~~---~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~-~~~-----~~~v~~~~~~~~~~~l~~~~~  226 (323)
                      ......+..   ....|.++...++|.+.+ ++.+.+..+|..+...... ...     ...|.++...++|.+. .++.
T Consensus       436 ~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~  513 (781)
T 3v9f_A          436 LKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFW-IGTF  513 (781)
T ss_dssp             SCEEEECCSTTTCCCCEEEEEECTTSEEEE-EETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEE-EEES
T ss_pred             CCcEEEeccCCCCCCeEEEEEECCCCCEEE-EECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEE-EEEc
Confidence            665555532   345788888888776544 4446788999765433221 111     3578999999988754 4555


Q ss_pred             -CcEEEEEcCCCceeeeecCCC-CccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-------cCCCCccceeEE
Q psy11524        227 -NVIHIFDISSSSSSNVTAPLS-HSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-------LDKPDTGSVYDL  297 (323)
Q Consensus       227 -d~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~  297 (323)
                       +|+..||..+++........+ ....|.++...++|     .|.++...|-+..++....       ........|.++
T Consensus       514 ~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-----~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i  588 (781)
T 3v9f_A          514 GGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKG-----QMWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAI  588 (781)
T ss_dssp             SSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTS-----CEEEEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEE
T ss_pred             CCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCC-----CEEEEECCCceEEECCCCCcEEEccccCCCCCceEEEE
Confidence             448889987665433210011 23468888888775     4555544322144443321       111223467888


Q ss_pred             EEeeCCCeeEeeecCCeE
Q psy11524        298 VWSSDATQIAGACANGSL  315 (323)
Q Consensus       298 ~~s~~g~~l~s~~~dg~i  315 (323)
                      ...++|++.++ +.+|..
T Consensus       589 ~~d~~g~lW~~-t~~Gl~  605 (781)
T 3v9f_A          589 SEDKNGNIWAS-TNTGIS  605 (781)
T ss_dssp             EECSSSCEEEE-CSSCEE
T ss_pred             EECCCCCEEEE-cCCceE
Confidence            88888875554 455643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.37  E-value=2.3e-05  Score=71.12  Aligned_cols=173  Identities=12%  Similarity=0.130  Sum_probs=110.7

Q ss_pred             EEEEEcCCCCeEEEEeeCC------------------eEEEEeCCCCcee--Eee--ccC-------CCeEEEEECCCC-
Q psy11524         85 YSAAWSPDSNKVLLTQAKS------------------LVIKPLSPNNKAT--KWQ--AHD-------GLILKVAWCSST-  134 (323)
Q Consensus        85 ~~~~~sp~~~~l~~~~~~~------------------~~v~~~~~~~~~~--~~~--~~~-------~~v~~~~~~~~~-  134 (323)
                      ..++++|++..++++..+.                  +.|..+|..+...  .++  .|.       .....+....+| 
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~  325 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK  325 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence            3578899998888776542                  1488888776522  222  121       122223333467 


Q ss_pred             --CEEEEEcCCCceEeeeEEeCC-CCeeeEeecCC-----------Cce------------------------eEEEEec
Q psy11524        135 --DLILSGGEDCKYKASFVWDTD-GRQLYSSLTHD-----------HPI------------------------SSLAWAP  176 (323)
Q Consensus       135 --~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~-----------~~v------------------------~~~~~~p  176 (323)
                        ..++.++.+|.+.   ++|.+ ++.+..+....           .++                        ..++++|
T Consensus       326 ~~~~l~~~~~~G~l~---~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp  402 (677)
T 1kb0_A          326 PRKVILHAPKNGFFF---VLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP  402 (677)
T ss_dssp             EEEEEEECCTTSEEE---EEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET
T ss_pred             EeeEEEEECCCCEEE---EEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC
Confidence              6789999999999   99985 66655443211           001                        1578899


Q ss_pred             CCCEEEEEeC--------------------------------------------CeEEEEeCCCCeeeecCCCCccEEEE
Q psy11524        177 GGDMFAVGSY--------------------------------------------NTLRLCDKVGWSHSLDKPDTGSVYDL  212 (323)
Q Consensus       177 ~~~~l~~~~~--------------------------------------------~~i~i~d~~~~~~~~~~~~~~~v~~~  212 (323)
                      ++.++++...                                            +.|..||+.+.++.....+..++...
T Consensus       403 ~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g  482 (677)
T 1kb0_A          403 QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGG  482 (677)
T ss_dssp             TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCC
T ss_pred             CCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCc
Confidence            8877766431                                            46889998866554333344444555


Q ss_pred             EEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCC
Q psy11524        213 VWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTG  261 (323)
Q Consensus       213 ~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g  261 (323)
                      .+..++..+++++.++ +++||.++++.+.++.. +.......+.+.++|
T Consensus       483 ~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~-~~~~~~~p~~y~~~G  531 (677)
T 1kb0_A          483 TLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT-GTGVVAAPSTYMVDG  531 (677)
T ss_dssp             EEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC-SSCCCSCCEEEEETT
T ss_pred             ceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC-CCCcccCCEEEEeCC
Confidence            5666777888899999 99999999999987422 222233345566776

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.36  E-value=0.00084  Score=56.82  Aligned_cols=157  Identities=9%  Similarity=-0.027  Sum_probs=107.8

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-----eeE-eeccCCCeEEEEECCC-CCEEEEEcCCCceEeeeE
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-----ATK-WQAHDGLILKVAWCSS-TDLILSGGEDCKYKASFV  151 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-----~~~-~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~i~v  151 (323)
                      .....+..++|++.+..|+.+....+.|+.++..+.     ... +.........+++.+. +++..+-...+.|.   +
T Consensus       109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~---~  185 (400)
T 3p5b_L          109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS---V  185 (400)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE---E
T ss_pred             cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEE---E
Confidence            345678999999988888887666668888877651     222 2324456788999884 44445555678888   9


Q ss_pred             EeCCCCeeeEeec-CCCceeEEEEecCCCEEEEEeC---CeEEEEeCCCCeee-ecCCCCccEEEEEEcCCCCEEEEEec
Q psy11524        152 WDTDGRQLYSSLT-HDHPISSLAWAPGGDMFAVGSY---NTLRLCDKVGWSHS-LDKPDTGSVYDLVWSNDATQIAGACA  226 (323)
Q Consensus       152 ~d~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~---~~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~  226 (323)
                      .++++.....+.. .......++++|.+..|+....   ..|...++.+.... .....-.....++++|++..|+.+..
T Consensus       186 ~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~  265 (400)
T 3p5b_L          186 ADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS  265 (400)
T ss_dssp             ECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             EeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC
Confidence            9998766555443 4455889999997666666653   37889998875443 33333457899999998877777765


Q ss_pred             C-c-EEEEEcCCCc
Q psy11524        227 N-V-IHIFDISSSS  238 (323)
Q Consensus       227 d-~-i~iwd~~~~~  238 (323)
                      . . |..+|+....
T Consensus       266 ~~~~I~~~d~dG~~  279 (400)
T 3p5b_L          266 KLHSISSIDVNGGN  279 (400)
T ss_dssp             TTTEEEEEETTSCC
T ss_pred             CCCEEEEEeCCCCc
Confidence            4 4 9999986543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.32  E-value=0.00083  Score=54.92  Aligned_cols=172  Identities=12%  Similarity=0.003  Sum_probs=111.0

Q ss_pred             CCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCce---eEeeccCCCeEEEEECCCC-CEEEEEcCCCceEeeeEEeCCCC
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKA---TKWQAHDGLILKVAWCSST-DLILSGGEDCKYKASFVWDTDGR  157 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~---~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~i~v~d~~~~  157 (323)
                      ....+++|++.+..|+.+....+.|+.++..+..   ..+...-.....+++.+.+ ++..+-...+.|.   ++++++.
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~---~~~~dG~  111 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIE---VSNLDGS  111 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEE---EEETTSC
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEE---EEECCCC
Confidence            3567899999888888776666688888776541   2222233456688888754 4445555667888   9999876


Q ss_pred             eeeEee-cCCCceeEEEEecCCCEEEEEeC--C-eEEEEeCCCCeeee-cCCCCccEEEEEEcCCCCEEEEEecC-c-EE
Q psy11524        158 QLYSSL-THDHPISSLAWAPGGDMFAVGSY--N-TLRLCDKVGWSHSL-DKPDTGSVYDLVWSNDATQIAGACAN-V-IH  230 (323)
Q Consensus       158 ~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~--~-~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d-~-i~  230 (323)
                      ....+. ........++++|.+..|+.+..  . .|...++.+..... ....-.....++++|++..|+.+... + |.
T Consensus       112 ~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~  191 (318)
T 3sov_A          112 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH  191 (318)
T ss_dssp             SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEE
Confidence            555543 34456789999997666666653  3 88888988654332 22234567899999977777766654 4 99


Q ss_pred             EEEcCCCceeeeecCCCCccceEEEEEc
Q psy11524        231 IFDISSSSSSNVTAPLSHSHEITQLAVN  258 (323)
Q Consensus       231 iwd~~~~~~~~~~~~~~~~~~v~~~~~~  258 (323)
                      .+|+........  ..........+++.
T Consensus       192 ~~d~dG~~~~~~--~~~~~~~P~glav~  217 (318)
T 3sov_A          192 KSNLDGTNRQAV--VKGSLPHPFALTLF  217 (318)
T ss_dssp             EEETTSCSCEEE--ECSCCSCEEEEEEE
T ss_pred             EEcCCCCceEEE--ecCCCCCceEEEEe
Confidence            999864332222  22233344556654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.30  E-value=7e-05  Score=68.15  Aligned_cols=181  Identities=12%  Similarity=0.149  Sum_probs=110.5

Q ss_pred             EEEEcCCCCeEEEEeeCCe------------------EEEEeCCCCcee--Eeec--cC-------CCeEEEEECCCCC-
Q psy11524         86 SAAWSPDSNKVLLTQAKSL------------------VIKPLSPNNKAT--KWQA--HD-------GLILKVAWCSSTD-  135 (323)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~------------------~v~~~~~~~~~~--~~~~--~~-------~~v~~~~~~~~~~-  135 (323)
                      .++++|++..++++..+..                  .|..+|..+...  .++.  |.       ..+.......+|+ 
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~  318 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP  318 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence            5788998888888765521                  388888776522  2222  21       1222222223564 


Q ss_pred             --EEEEEcCCCceEeeeEEeCC-CCeeeEeecCC---------------------------------------CceeEEE
Q psy11524        136 --LILSGGEDCKYKASFVWDTD-GRQLYSSLTHD---------------------------------------HPISSLA  173 (323)
Q Consensus       136 --~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~---------------------------------------~~v~~~~  173 (323)
                        .++.++.+|.++   ++|.+ ++.+.......                                       ..-..++
T Consensus       319 ~~~v~~~~~~G~l~---~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a  395 (689)
T 1yiq_A          319 RKVLMQAPKNGFFY---VIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMS  395 (689)
T ss_dssp             EEEEEECCTTSEEE---EEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCE
T ss_pred             EEEEEEECCCCeEE---EEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcce
Confidence              788899999999   99985 55543221100                                       0012378


Q ss_pred             EecCCCEEEEEeC----------------------------------------------CeEEEEeCCCCeeeecCCCCc
Q psy11524        174 WAPGGDMFAVGSY----------------------------------------------NTLRLCDKVGWSHSLDKPDTG  207 (323)
Q Consensus       174 ~~p~~~~l~~~~~----------------------------------------------~~i~i~d~~~~~~~~~~~~~~  207 (323)
                      |+|+..++++...                                              +.|+.||+.+.++.....+..
T Consensus       396 ~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~  475 (689)
T 1yiq_A          396 YNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT  475 (689)
T ss_dssp             EETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS
T ss_pred             ECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC
Confidence            8998777766421                                              368889987665543322333


Q ss_pred             cEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeC
Q psy11524        208 SVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDK  273 (323)
Q Consensus       208 ~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~  273 (323)
                      ......+...+.++++++.|+ ++.||.++|+.+.+++.. ......-+.|..+|+   .+|.+...
T Consensus       476 ~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~-~~~~~~p~ty~~~G~---qyv~~~~G  538 (689)
T 1yiq_A          476 IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA-SGVMAAPVTYSVDGE---QYVTFMAG  538 (689)
T ss_dssp             SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-SCCCSCCEEEEETTE---EEEEEEEC
T ss_pred             CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC-CCcccCceEEEECCE---EEEEEEec
Confidence            333345556777899999999 999999999999874222 222223466777773   56665544

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.30  E-value=0.00093  Score=54.58  Aligned_cols=155  Identities=9%  Similarity=-0.053  Sum_probs=105.1

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCC----c-eeEe-eccCCCeEEEEECCCCCEE-EEEcCCCceEeeeEE
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN----K-ATKW-QAHDGLILKVAWCSSTDLI-LSGGEDCKYKASFVW  152 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~----~-~~~~-~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~i~v~  152 (323)
                      ......+++|++++..|+.+....+.|+.++..+    . ...+ ...-..+..+++.+.+..| ++-...+.|.   +.
T Consensus        28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~---~~  104 (316)
T 1ijq_A           28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS---VA  104 (316)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEE---EE
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEE---EE
Confidence            4566889999998888888776667888888765    2 2222 2222456788998755444 4545678888   99


Q ss_pred             eCCCCeeeEeec-CCCceeEEEEecCCCEEEEEeC---CeEEEEeCCCCeeeec-CCCCccEEEEEEcCCCCEEEEEecC
Q psy11524        153 DTDGRQLYSSLT-HDHPISSLAWAPGGDMFAVGSY---NTLRLCDKVGWSHSLD-KPDTGSVYDLVWSNDATQIAGACAN  227 (323)
Q Consensus       153 d~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~---~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d  227 (323)
                      +++++....+.. .......++++|.+..++.+..   +.|...++.+.....+ ...-.....++++|++..|+.+...
T Consensus       105 ~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~  184 (316)
T 1ijq_A          105 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK  184 (316)
T ss_dssp             ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             eCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECC
Confidence            998765554432 3456789999997666655554   3788888886544432 2234568899999987777766654


Q ss_pred             -c-EEEEEcCCC
Q psy11524        228 -V-IHIFDISSS  237 (323)
Q Consensus       228 -~-i~iwd~~~~  237 (323)
                       + |..+|+...
T Consensus       185 ~~~I~~~d~dg~  196 (316)
T 1ijq_A          185 LHSISSIDVNGG  196 (316)
T ss_dssp             TTEEEEEETTSC
T ss_pred             CCeEEEEecCCC
Confidence             4 999998643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.29  E-value=0.00097  Score=54.50  Aligned_cols=214  Identities=12%  Similarity=-0.039  Sum_probs=124.1

Q ss_pred             eEEEEeeCCeEEEEeCCCCc---eeEeeccCCCeEEEEECCCCCEEEEE-cCCCceEeeeEEeCCCCe--eeEeecCCCc
Q psy11524         95 KVLLTQAKSLVIKPLSPNNK---ATKWQAHDGLILKVAWCSSTDLILSG-GEDCKYKASFVWDTDGRQ--LYSSLTHDHP  168 (323)
Q Consensus        95 ~l~~~~~~~~~v~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~i~v~d~~~~~--~~~~~~~~~~  168 (323)
                      +|+++..  ..|+..++.+.   ..........+.+++|.+.+..|+.+ ...+.|.   .+++++..  ...+......
T Consensus         6 ~ll~~~~--~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~---r~~~~g~~~~~~~~~~~l~~   80 (318)
T 3sov_A            6 LLLYANR--RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIK---RTEFNKTESVQNVVVSGLLS   80 (318)
T ss_dssp             EEEEECE--EEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEE---EEETTSSSCCCEEEEECCSC
T ss_pred             EEEEEcc--CeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEE---EEEccCCCceEEEEcCCCCC
Confidence            4555543  36777776654   11122223356789999865555444 4567788   89887542  1222223345


Q ss_pred             eeEEEEecCCCEEEEEeC-C-eEEEEeCCCCeee-ecCCCCccEEEEEEcCCCCEEEEEec--Cc-EEEEEcCCCceeee
Q psy11524        169 ISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSHS-LDKPDTGSVYDLVWSNDATQIAGACA--NV-IHIFDISSSSSSNV  242 (323)
Q Consensus       169 v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~--d~-i~iwd~~~~~~~~~  242 (323)
                      ...+++.+.+..|+.+.. . .|.++++.+.... ...........++++|.+..|+.+..  .+ |...++.... ...
T Consensus        81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~  159 (318)
T 3sov_A           81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFI  159 (318)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEE
T ss_pred             ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEE
Confidence            678999986666665554 3 9999999875433 33334456899999997666666553  45 8888875432 222


Q ss_pred             ecCCCCccceEEEEEccCCCCccceEEEEeCCC-CeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEE
Q psy11524        243 TAPLSHSHEITQLAVNQTGSLQERHVAFIDKNR-DLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLL  317 (323)
Q Consensus       243 ~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~-~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~  317 (323)
                      + ....-.....++++|++    +.|...|... .+..+++...    +.........++++. .+..+.+-...+.|..
T Consensus       160 ~-~~~~l~~Pnglavd~~~----~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~  233 (318)
T 3sov_A          160 I-INSEIYWPNGLTLDYEE----QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILA  233 (318)
T ss_dssp             E-ECSSCSCEEEEEEETTT----TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             E-EECCCCCccEEEEeccC----CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEE
Confidence            1 22333456899999977    6666666432 3444444321    111113445667764 3344445555677776


Q ss_pred             EEe
Q psy11524        318 GTI  320 (323)
Q Consensus       318 ~~l  320 (323)
                      ++.
T Consensus       234 ~~~  236 (318)
T 3sov_A          234 CNK  236 (318)
T ss_dssp             EET
T ss_pred             EEC
Confidence            654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.26  E-value=0.0015  Score=55.35  Aligned_cols=214  Identities=7%  Similarity=-0.040  Sum_probs=127.0

Q ss_pred             CeEEEEeeCCeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEc-CCCceEeeeEEeCCCC----eeeEe-ecCC
Q psy11524         94 NKVLLTQAKSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGG-EDCKYKASFVWDTDGR----QLYSS-LTHD  166 (323)
Q Consensus        94 ~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~i~v~d~~~~----~~~~~-~~~~  166 (323)
                      .+|+++...  .|+..++... ...+......+..++|++.+..|+.+. ..+.|.   .+++++.    ....+ ....
T Consensus        84 ~~ll~~~~~--~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~---~~~~~g~~~~~~~~~~~~~~~  158 (400)
T 3p5b_L           84 AYLFFTNRH--EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMIC---STQLDRAHGVSSYDTVISRDI  158 (400)
T ss_dssp             CEEEEEETT--EEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEE---EEEC------CCCEEEECSSC
T ss_pred             ceeEEeccc--eeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEE---EEEcccCCCCCcceEEEeCCC
Confidence            355555333  6777777665 344444566788999998766665554 567788   8888652    22233 3344


Q ss_pred             CceeEEEEecCCCEEEEEeC-C-eEEEEeCCCCeee-ecCCCCccEEEEEEcCCCCEEEEEec--Cc-EEEEEcCCCcee
Q psy11524        167 HPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSHS-LDKPDTGSVYDLVWSNDATQIAGACA--NV-IHIFDISSSSSS  240 (323)
Q Consensus       167 ~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~--d~-i~iwd~~~~~~~  240 (323)
                      .....+++.+.+..|+.+.. . .|.+.++.+.... ...........++++|.+.+|+....  .+ |...++......
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~  238 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  238 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence            56789999986666666655 3 9999999876443 33334456899999997666665543  35 888887654333


Q ss_pred             eeecCCCCccceEEEEEccCCCCccceEEEEeCCC-CeEEEecccc----cCC--CCccceeEEEEeeCCCeeEeeecCC
Q psy11524        241 NVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNR-DLYLSMWSHS----LDK--PDTGSVYDLVWSSDATQIAGACANG  313 (323)
Q Consensus       241 ~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~-~~~~~~~~~~----~~~--~~~~~v~~~~~s~~g~~l~s~~~dg  313 (323)
                      ..  ....-.....++++|++    +.|...|... .+...++...    +..  ..-....++++ ..+..+.+-...+
T Consensus       239 ~~--~~~~l~~P~glavd~~~----~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~  311 (400)
T 3p5b_L          239 SL--VTENIQWPNGITLDLLS----GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINE  311 (400)
T ss_dssp             EE--ECSSCSCEEEEEEETTT----TEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSC
T ss_pred             EE--EECCCCceEEEEEEeCC----CEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCC
Confidence            22  23333567899999887    5666665432 3444444332    100  01123446666 2334444555566


Q ss_pred             eEEEEE
Q psy11524        314 SLLLGT  319 (323)
Q Consensus       314 ~i~~~~  319 (323)
                      .|..++
T Consensus       312 ~V~~~~  317 (400)
T 3p5b_L          312 AIFSAN  317 (400)
T ss_dssp             SEEEEE
T ss_pred             eEEEEE
Confidence            676665

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.25  E-value=0.00025  Score=60.70  Aligned_cols=188  Identities=10%  Similarity=0.025  Sum_probs=111.6

Q ss_pred             CeEEEEECCC--CCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC----C-eEEEEeCCC
Q psy11524        124 LILKVAWCSS--TDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY----N-TLRLCDKVG  196 (323)
Q Consensus       124 ~v~~~~~~~~--~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~----~-~i~i~d~~~  196 (323)
                      ....++|+|+  +..|+.+...+.|+   .+|+.+..+..+.........++++++|+++++...    . .+...+..+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~---~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFR---HVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEE---EEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEE---EEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCC
Confidence            4568999984  44555555447788   999976777766665667899999999994444331    1 244444332


Q ss_pred             Cee--eecCCCCccEEEEEEcC-CCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEe
Q psy11524        197 WSH--SLDKPDTGSVYDLVWSN-DATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFID  272 (323)
Q Consensus       197 ~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~  272 (323)
                      ...  .... .......++++| +|.+.++-..++ |+.+|..++.....+...+.......++|+|++    +.|.+.+
T Consensus       217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG----~~LYvad  291 (433)
T 4hw6_A          217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTG----DWAYIIY  291 (433)
T ss_dssp             TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTS----SEEEEEE
T ss_pred             Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCC----CEEEEEe
Confidence            111  1111 223467788999 666555555566 999998877652221011222233479999998    6677776


Q ss_pred             CC-CCeEEEeccc--ccC----------C--C---------CccceeEEEE---------eeCCCeeEeeecCCeEEEEE
Q psy11524        273 KN-RDLYLSMWSH--SLD----------K--P---------DTGSVYDLVW---------SSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       273 ~~-~~~~~~~~~~--~~~----------~--~---------~~~~v~~~~~---------s~~g~~l~s~~~dg~i~~~~  319 (323)
                      .. ..+..++...  ...          .  +         .-.....+++         .++|.++++-...++|+.++
T Consensus       292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~  371 (433)
T 4hw6_A          292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT  371 (433)
T ss_dssp             TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred             CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence            54 3344444321  000          0  0         0123567888         67777776666677777664

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.25  E-value=0.00025  Score=59.42  Aligned_cols=141  Identities=10%  Similarity=0.020  Sum_probs=80.3

Q ss_pred             CCeEEEEeeCCeEEEEeCCCCc-ee-Eeecc---------CCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeee
Q psy11524         93 SNKVLLTQAKSLVIKPLSPNNK-AT-KWQAH---------DGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLY  160 (323)
Q Consensus        93 ~~~l~~~~~~~~~v~~~~~~~~-~~-~~~~~---------~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~  160 (323)
                      +..+++++.+ +.|+.+|..+. .. .....         ...+.+. ...++..+++++.++.+.   .+|.+ ++.+.
T Consensus        53 ~~~v~~~~~~-g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~---a~d~~tG~~~W  127 (376)
T 3q7m_A           53 DNVVYAADRA-GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVY---ALNTSDGTVAW  127 (376)
T ss_dssp             TTEEEEECTT-SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEE---EEETTTCCEEE
T ss_pred             CCEEEEEcCC-CeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEE---EEECCCCCEEE
Confidence            5566666555 57888887544 21 22211         1222221 112456777888899999   99985 77766


Q ss_pred             EeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeee-ecCCCCccE------EEEEEcCCCCEEEEEecCc-EEE
Q psy11524        161 SSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHS-LDKPDTGSV------YDLVWSNDATQIAGACANV-IHI  231 (323)
Q Consensus       161 ~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~-~~~~~~~~v------~~~~~~~~~~~l~~~~~d~-i~i  231 (323)
                      ...............  +..+++++.+ .+..+|..+.... ... ....+      ......  +..++.++.++ +..
T Consensus       128 ~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~-~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~  202 (376)
T 3q7m_A          128 QTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVN-LDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA  202 (376)
T ss_dssp             EEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEE-CCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred             EEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEe-CCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence            665433222222332  3466666664 8999998644332 222 11111      112222  34677788888 999


Q ss_pred             EEcCCCceeeee
Q psy11524        232 FDISSSSSSNVT  243 (323)
Q Consensus       232 wd~~~~~~~~~~  243 (323)
                      +|..+|+.+...
T Consensus       203 ~d~~tG~~~w~~  214 (376)
T 3q7m_A          203 VLMEQGQMIWQQ  214 (376)
T ss_dssp             EETTTCCEEEEE
T ss_pred             EECCCCcEEEEE
Confidence            999999887653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.24  E-value=0.0013  Score=54.01  Aligned_cols=221  Identities=12%  Similarity=0.049  Sum_probs=121.7

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEee---ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQ---AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-  155 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-  155 (323)
                      ...+.++.|+| +. +++++... .|+.-...++ -....   .+.+.+..+.+.+++..++++. ++.+.   . ..+ 
T Consensus        79 ~~~~~~i~~~~-~~-~~~~g~~g-~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~---~-S~Dg  150 (327)
T 2xbg_A           79 DYRFNSVSFQG-NE-GWIVGEPP-IMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIY---R-TKDS  150 (327)
T ss_dssp             CCEEEEEEEET-TE-EEEEEETT-EEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEE---E-ESST
T ss_pred             CccEEEEEecC-Ce-EEEEECCC-eEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccEE---E-EcCC
Confidence            44689999986 44 44445553 4444333232 11111   2345677888877776666554 55443   2 222 


Q ss_pred             CCeeeEe-ecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCC--CCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EE
Q psy11524        156 GRQLYSS-LTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKV--GWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IH  230 (323)
Q Consensus       156 ~~~~~~~-~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~  230 (323)
                      ++.-... ......+..+++.|++.+++++..+ ..+-.|-.  ..... .......+..+.+.+++..+ ..+.++ ++
T Consensus       151 G~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~  228 (327)
T 2xbg_A          151 GKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTPDGRLW-MIVNGGKIA  228 (327)
T ss_dssp             TSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE-ECCSSSCEEEEEECTTSCEE-EEETTTEEE
T ss_pred             CCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC-CCCCCCccceeEECCCCCEE-EEeCCceEE
Confidence            2222222 2344578899999999888777666 44445542  22222 22345678899999988755 455677 77


Q ss_pred             EEEcCCCceeeeecCC--CCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----cC--CCCccceeEEEEee
Q psy11524        231 IFDISSSSSSNVTAPL--SHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----LD--KPDTGSVYDLVWSS  301 (323)
Q Consensus       231 iwd~~~~~~~~~~~~~--~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----~~--~~~~~~v~~~~~s~  301 (323)
                      +.+...++.-......  .....+..+++.+++     .+.+...++.+.. ....+     +.  ......+.++.|.+
T Consensus       229 ~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~v~~~~  302 (327)
T 2xbg_A          229 FSDPDNSENWGELLSPLRRNSVGFLDLAYRTPN-----EVWLAGGAGALLC-SQDGGQTWQQDVDVKKVPSNFYKILFFS  302 (327)
T ss_dssp             EEETTEEEEECCCBCTTSSCCSCEEEEEESSSS-----CEEEEESTTCEEE-ESSTTSSCEECGGGTTSSSCCCEEEEEE
T ss_pred             EecCCCCCeeEeccCCcccCCcceEEEEecCCC-----EEEEEeCCCeEEE-eCCCCcccEEcCccCCCCCCeEEEEEEC
Confidence            7643323332221011  122458889998875     3444444554432 22211     11  01135678899986


Q ss_pred             CCCeeEeeecCCeEEEE
Q psy11524        302 DATQIAGACANGSLLLG  318 (323)
Q Consensus       302 ~g~~l~s~~~dg~i~~~  318 (323)
                      +++ ++.++.+|.|.-+
T Consensus       303 ~~~-~~~~G~~G~i~~~  318 (327)
T 2xbg_A          303 PDQ-GFILGQKGILLRY  318 (327)
T ss_dssp             TTE-EEEECSTTEEEEE
T ss_pred             CCc-eEEEcCCceEEEE
Confidence            654 6666778976654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.21  E-value=0.0015  Score=60.19  Aligned_cols=157  Identities=10%  Similarity=-0.033  Sum_probs=107.2

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc------eeEeeccCCCeEEEEECCCCCEEE-EEcCCCceEeeeEE
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK------ATKWQAHDGLILKVAWCSSTDLIL-SGGEDCKYKASFVW  152 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~i~v~  152 (323)
                      ....+..++|++.+..|+.+....+.|+.+++.+.      ...+......+..|++.+.+..|+ +-...+.|.   +.
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~---v~  498 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS---VA  498 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEE---EE
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEE---EE
Confidence            45678899999988888877666667887776642      222232345567889988775554 445567888   99


Q ss_pred             eCCCCeeeEeec-CCCceeEEEEecCCCEEEEEeC---CeEEEEeCCCCeeee-cCCCCccEEEEEEcCCCCEEEEEecC
Q psy11524        153 DTDGRQLYSSLT-HDHPISSLAWAPGGDMFAVGSY---NTLRLCDKVGWSHSL-DKPDTGSVYDLVWSNDATQIAGACAN  227 (323)
Q Consensus       153 d~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~---~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d  227 (323)
                      ++++.....+.. .......|+++|.+..|+.+..   ..|...++.+..... ....-.....|++++.+..|+.+...
T Consensus       499 ~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~  578 (791)
T 3m0c_C          499 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK  578 (791)
T ss_dssp             ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             eCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCC
Confidence            998776655543 3456889999998666666654   378889988765443 33334578999999877777776554


Q ss_pred             c--EEEEEcCCCce
Q psy11524        228 V--IHIFDISSSSS  239 (323)
Q Consensus       228 ~--i~iwd~~~~~~  239 (323)
                      .  |..+++.....
T Consensus       579 ~~~I~~~d~dG~~~  592 (791)
T 3m0c_C          579 LHSISSIDVNGGNR  592 (791)
T ss_dssp             TTEEEEEETTSCSC
T ss_pred             CCcEEEEecCCCce
Confidence            4  99999865433

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.17  E-value=0.002  Score=53.51  Aligned_cols=219  Identities=11%  Similarity=0.047  Sum_probs=115.2

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEee------ccCCCeEEEEECCC---CCEEEEEcC----C----
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQ------AHDGLILKVAWCSS---TDLILSGGE----D----  143 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~------~~~~~v~~~~~~~~---~~~l~~~~~----d----  143 (323)
                      -.....|+|.|+|+.++ +... +.|++++..+. ..+.      ........++++|+   +..|+.+..    +    
T Consensus        28 l~~P~~ia~~pdG~l~V-~e~~-g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLV-TERP-GRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             CSCEEEEEEEETTEEEE-EETT-TEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCCCeEEEEcCCCeEEE-EeCC-CEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            45678999999998554 4344 68888875543 2221      12356889999997   445544432    2    


Q ss_pred             CceEeeeEEeCCCC--e---eeE----eec-CCCceeEEEEecCCCEEEEEeC--------------CeEEEEeCCCCe-
Q psy11524        144 CKYKASFVWDTDGR--Q---LYS----SLT-HDHPISSLAWAPGGDMFAVGSY--------------NTLRLCDKVGWS-  198 (323)
Q Consensus       144 ~~i~~i~v~d~~~~--~---~~~----~~~-~~~~v~~~~~~p~~~~l~~~~~--------------~~i~i~d~~~~~-  198 (323)
                      ..|.   .++.++.  .   ...    +.. .......++|.|||.++++.+.              +.|.-++..+.. 
T Consensus       105 ~~v~---r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p  181 (354)
T 3a9g_A          105 NRVI---RGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP  181 (354)
T ss_dssp             EEEE---EEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred             eEEE---EEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence            4555   7776543  1   111    221 1123467999999987666432              245555554420 


Q ss_pred             --------eeecCCCCccEEEEEEcC-CCCEEEEEecC-c---EEEEEcCCCc------------------eeeeecCCC
Q psy11524        199 --------HSLDKPDTGSVYDLVWSN-DATQIAGACAN-V---IHIFDISSSS------------------SSNVTAPLS  247 (323)
Q Consensus       199 --------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d-~---i~iwd~~~~~------------------~~~~~~~~~  247 (323)
                              .....++ .....++|+| +|++.++-... .   |.+..  .+.                  ++..  +..
T Consensus       182 ~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~--~~~  256 (354)
T 3a9g_A          182 ADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVID--TGS  256 (354)
T ss_dssp             TTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEE--CTT
T ss_pred             CCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEee--cCC
Confidence                    1111222 2356899999 66655443322 1   33332  221                  1111  211


Q ss_pred             CccceEEEEEccCCC--CccceEEEEeCCC-CeEEEecccc--------cCCCCccceeEEEEeeCCCeeEeee
Q psy11524        248 HSHEITQLAVNQTGS--LQERHVAFIDKNR-DLYLSMWSHS--------LDKPDTGSVYDLVWSSDATQIAGAC  310 (323)
Q Consensus       248 ~~~~v~~~~~~p~g~--~~d~~l~~~~~~~-~~~~~~~~~~--------~~~~~~~~v~~~~~s~~g~~l~s~~  310 (323)
                      .......++|.....  ..++.+.+.+..+ .+....+...        +.......+..+++.|||.++++..
T Consensus       257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            223567778853221  1224555555443 2333333310        1211135789999999997666554

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.13  E-value=0.0005  Score=55.65  Aligned_cols=193  Identities=8%  Similarity=-0.029  Sum_probs=112.3

Q ss_pred             cCCCCeEEEEee-CCeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCC--------------ceEeeeEEe
Q psy11524         90 SPDSNKVLLTQA-KSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDC--------------KYKASFVWD  153 (323)
Q Consensus        90 sp~~~~l~~~~~-~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------------~i~~i~v~d  153 (323)
                      +++|.+|++... ++..|+..+..+. ...+....    +--++++|.+|+.+....              .|+   ..+
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~~----~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy---~i~   94 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDT----AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLC---RIK   94 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEEE----EEEEEECSSEEEEEEECC------CCSSCCSEEEE---EEE
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCCc----eeeEEEcCCEEEEEECCCCcccccceeccCCCeEE---EEe
Confidence            457888887752 3457777776654 44443321    234578898888776532              344   777


Q ss_pred             CCCCeeeEeecCCCceeEEEEecCCCEEEEEe---C-C-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecC-
Q psy11524        154 TDGRQLYSSLTHDHPISSLAWAPGGDMFAVGS---Y-N-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN-  227 (323)
Q Consensus       154 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~---~-~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-  227 (323)
                      +++.....+....    ...|+++++.|+...   . + .|+..++.+.....+..+..    ..++|+++.|+-.+.+ 
T Consensus        95 ~dg~~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~  166 (302)
T 3s25_A           95 RNGHGSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKN  166 (302)
T ss_dssp             TTSCCCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTT
T ss_pred             CCCCcceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCC
Confidence            7766655554332    236788899988877   3 3 78888888654444433322    3567888888877663 


Q ss_pred             c-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCC--CeEEEecccc-cCCCCccceeEEEEeeCC
Q psy11524        228 V-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNR--DLYLSMWSHS-LDKPDTGSVYDLVWSSDA  303 (323)
Q Consensus       228 ~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~--~~~~~~~~~~-~~~~~~~~v~~~~~s~~g  303 (323)
                      . |...++..+.....  +.+   ... ..+.|++    +.|...+...  .+...++... ....-...+  ..|+|++
T Consensus       167 ~~Iy~~~l~g~~~~~l--~~~---~~~-~~~~P~g----~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~~--~~~~~~g  234 (302)
T 3s25_A          167 GQLYRYDTASQSEALF--YDC---NCY-KPVVLDD----TNVYYMDVNRDNAIVHVNINNPNPVVLTEANI--EHYNVYG  234 (302)
T ss_dssp             CCEEEEETTTTEEEEE--ECS---CEE-EEEEEET----TEEEEEEGGGTTEEEEECSSSCCCEECSCSCE--EEEEEET
T ss_pred             ceEEEEECCCCCEEEE--eCC---Ccc-ceeeecC----CEEEEEEcCCCcEEEEEECCCCCeEEEeCCCc--ceEEECC
Confidence            4 88888776654432  222   222 2356887    6665544433  2333333332 000111222  3478888


Q ss_pred             CeeEee
Q psy11524        304 TQIAGA  309 (323)
Q Consensus       304 ~~l~s~  309 (323)
                      +.|+-+
T Consensus       235 ~~Iy~~  240 (302)
T 3s25_A          235 SLIFYQ  240 (302)
T ss_dssp             TEEEEE
T ss_pred             CEEEEE
Confidence            877754

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.12  E-value=0.00039  Score=56.36  Aligned_cols=157  Identities=8%  Similarity=0.087  Sum_probs=100.6

Q ss_pred             ecCCCceeEEEEecCCCEEEEEeC-C-eEEEEeCCCC-eeeecCCC-------CccEEEEEE---cCCCCEEEEEec---
Q psy11524        163 LTHDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGW-SHSLDKPD-------TGSVYDLVW---SNDATQIAGACA---  226 (323)
Q Consensus       163 ~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~-~~~~~~~~-------~~~v~~~~~---~~~~~~l~~~~~---  226 (323)
                      ........+++|++....|..++. . +|..||..+. ........       ...+..+.|   .|+++++++...   
T Consensus         9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a   88 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS   88 (334)
T ss_dssp             CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred             cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence            334445668899987777777775 4 9999998743 22222221       114689999   688877775432   


Q ss_pred             ----------Cc-EEEEEcC---CCceeeeecCCC-----------CccceEEEEEccCCC-----Ccc-ceEEEEeCCC
Q psy11524        227 ----------NV-IHIFDIS---SSSSSNVTAPLS-----------HSHEITQLAVNQTGS-----LQE-RHVAFIDKNR  275 (323)
Q Consensus       227 ----------d~-i~iwd~~---~~~~~~~~~~~~-----------~~~~v~~~~~~p~g~-----~~d-~~l~~~~~~~  275 (323)
                                +. +..||+.   +++.+....+..           .......++..++|+     +.. ..|.-.+.+|
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG  168 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG  168 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred             ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence                      56 9999999   777765432221           113578999999986     222 4445555555


Q ss_pred             C-eEEEecccccCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        276 D-LYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       276 ~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      . +..|..... ........+.++++|+|+.|+.....|.+..+++
T Consensus       169 ~~~~~~~~~~~-~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~  213 (334)
T 2p9w_A          169 KTVSTFAWESG-NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDV  213 (334)
T ss_dssp             CCEEEEEECCC-CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEEC
T ss_pred             CEEeeeeecCC-CcccccCcceEEEeCCCCEEEEEcCCCeEEEEcC
Confidence            4 334443321 1111334679999999998888777998888775

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.10  E-value=0.0059  Score=56.24  Aligned_cols=177  Identities=7%  Similarity=-0.076  Sum_probs=109.8

Q ss_pred             eEEEEeeCCeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEE-EEcCCCceEeeeEEeCCCC-----eeeEeecCCC
Q psy11524         95 KVLLTQAKSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLIL-SGGEDCKYKASFVWDTDGR-----QLYSSLTHDH  167 (323)
Q Consensus        95 ~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~i~v~d~~~~-----~~~~~~~~~~  167 (323)
                      +|+++...  .|+..++... ...+......+..++|.+.+..|+ +-...+.|+   .+++++.     ....+.....
T Consensus       397 ~Ll~an~~--~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~---~~~l~g~~~~~~~~~vi~~~l~  471 (791)
T 3m0c_C          397 YLFFTNRH--EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMIC---STQLDRAHGVSSYDTVISRDIQ  471 (791)
T ss_dssp             EEEEECBS--SEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEE---EEEC--------CEEEECSSCS
T ss_pred             cccccccc--ceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEE---EEeccCCCCCcceeEEEecCCC
Confidence            55555443  4555565544 334444556778999998655554 444567787   8888652     2223333445


Q ss_pred             ceeEEEEecCCCEEEEEeC-C-eEEEEeCCCCeeee-cCCCCccEEEEEEcCCCCEEEEEec-C-c-EEEEEcCCCceee
Q psy11524        168 PISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSHSL-DKPDTGSVYDLVWSNDATQIAGACA-N-V-IHIFDISSSSSSN  241 (323)
Q Consensus       168 ~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~-d-~-i~iwd~~~~~~~~  241 (323)
                      ....|++.+.+..|+.+.. . .|.+.++.+..... ..........|+++|.+.+|+.... . . |...++.......
T Consensus       472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~  551 (791)
T 3m0c_C          472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  551 (791)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE
Confidence            6788999998877777766 4 99999998764443 3334456899999997666665543 3 5 8888876544333


Q ss_pred             eecCCCCccceEEEEEccCCCCccceEEEEeCCC-CeEEEec
Q psy11524        242 VTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNR-DLYLSMW  282 (323)
Q Consensus       242 ~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~-~~~~~~~  282 (323)
                      .  +.........|++++.+    +.|.+.+... .+...++
T Consensus       552 l--v~~~l~~P~GLavD~~~----~~LYwaD~~~~~I~~~d~  587 (791)
T 3m0c_C          552 L--VTENIQWPNGITLDLLS----GRLYWVDSKLHSISSIDV  587 (791)
T ss_dssp             E--ECSSCSCEEEEEEETTT----TEEEEEETTTTEEEEEET
T ss_pred             E--EeCCCCCceEEEEecCC----CeEEEEeCCCCcEEEEec
Confidence            2  33344578899999876    6666666443 3444444

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.10  E-value=0.0049  Score=55.24  Aligned_cols=155  Identities=9%  Similarity=-0.094  Sum_probs=102.9

Q ss_pred             CCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCce-eEee-ccCCCeEEEEECCCCCEEEEEcC--CCceEeeeEEeCCCC
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKA-TKWQ-AHDGLILKVAWCSSTDLILSGGE--DCKYKASFVWDTDGR  157 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~-~~~~-~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~i~v~d~~~~  157 (323)
                      .....+++.+.+..|+.+....+.|.+.+..+.. ..+. ..-.....|++.|.+..|+.+..  .+.|.   ..++++.
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~---r~~~dG~  160 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIE---RAGMDGS  160 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEE---EEETTSC
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEE---EEECCCC
Confidence            5788999999888888887766789999888763 3332 34455778999997665655543  35666   7788776


Q ss_pred             eeeEee-cCCCceeEEEEecCCCEEEEEeC-C-eEEEEeCCCCeeeecCC-CCccEEEEEEcCCCCEEEEEec-Cc-EEE
Q psy11524        158 QLYSSL-THDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSHSLDKP-DTGSVYDLVWSNDATQIAGACA-NV-IHI  231 (323)
Q Consensus       158 ~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-d~-i~i  231 (323)
                      ....+. ..-.....+++++++..|+.+.. . .|..+|+.+........ .......+++..+  .|+.+.. .+ |..
T Consensus       161 ~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~  238 (619)
T 3s94_A          161 SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILA  238 (619)
T ss_dssp             SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEE
T ss_pred             ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEE
Confidence            555543 23456789999998777777776 3 89999998764443321 2233456777655  4555543 44 988


Q ss_pred             EEcCCCceee
Q psy11524        232 FDISSSSSSN  241 (323)
Q Consensus       232 wd~~~~~~~~  241 (323)
                      .|..+++...
T Consensus       239 ~d~~tg~~~~  248 (619)
T 3s94_A          239 CNKYTGEGLR  248 (619)
T ss_dssp             EESSSCCCCE
T ss_pred             EECCCCcccE
Confidence            8987775443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.09  E-value=0.00067  Score=56.77  Aligned_cols=209  Identities=12%  Similarity=0.064  Sum_probs=109.4

Q ss_pred             CCCeEEEEeeCCeEEEEeCCCCc-e-eEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC-CCCeeeEeecCCCc
Q psy11524         92 DSNKVLLTQAKSLVIKPLSPNNK-A-TKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT-DGRQLYSSLTHDHP  168 (323)
Q Consensus        92 ~~~~l~~~~~~~~~v~~~~~~~~-~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~-~~~~~~~~~~~~~~  168 (323)
                      ++..+++++.+ +.|+.+|..+. . ...............  .+..++.++.++.+.   .+|. +++.+.........
T Consensus       102 ~~~~v~v~~~~-g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~---~~d~~tG~~~W~~~~~~~~  175 (376)
T 3q7m_A          102 SGGHVYIGSEK-AQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQ---ALNEADGAVKWTVNLDMPS  175 (376)
T ss_dssp             ETTEEEEEETT-SEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEE---EEETTTCCEEEEEECCC--
T ss_pred             eCCEEEEEcCC-CEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEE---EEECCCCcEEEEEeCCCCc
Confidence            35566666555 58888887654 2 222222111111122  245777888899999   9998 47766665543221


Q ss_pred             e-----eEEEEecCCCEEEEEeCC-eEEEEeCCCCeee-ecCCC-C-c-----cEEEEEEcC--CCCEEEEEecCc-EEE
Q psy11524        169 I-----SSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHS-LDKPD-T-G-----SVYDLVWSN--DATQIAGACANV-IHI  231 (323)
Q Consensus       169 v-----~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~-~~~~~-~-~-----~v~~~~~~~--~~~~l~~~~~d~-i~i  231 (323)
                      .     ......  +..++++..+ .+..+|..+.... ..... . .     .+..+.-.|  .+..++.++.++ +..
T Consensus       176 ~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~  253 (376)
T 3q7m_A          176 LSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTA  253 (376)
T ss_dssp             ---CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEE
T ss_pred             eeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEE
Confidence            1     222222  3456666664 8999998644332 21111 0 0     000011112  245777888888 999


Q ss_pred             EEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----cCCCCccceeEEEEeeCCCee
Q psy11524        232 FDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----LDKPDTGSVYDLVWSSDATQI  306 (323)
Q Consensus       232 wd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g~~l  306 (323)
                      +|.++++.+...  ..  .....+...  +    +.+.+.+.++.+..++..++     ........+..+..  .+..|
T Consensus       254 ~d~~tG~~~w~~--~~--~~~~~~~~~--~----~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l  321 (376)
T 3q7m_A          254 LDLRSGQIMWKR--EL--GSVNDFIVD--G----NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNL  321 (376)
T ss_dssp             EETTTCCEEEEE--CC--CCEEEEEEE--T----TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEE
T ss_pred             EECCCCcEEeec--cC--CCCCCceEE--C----CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEE
Confidence            999999988763  21  123333332  2    34555555555554444332     00011112222222  34578


Q ss_pred             EeeecCCeEEEEEe
Q psy11524        307 AGACANGSLLLGTI  320 (323)
Q Consensus       307 ~s~~~dg~i~~~~l  320 (323)
                      +.++.+|.+++++.
T Consensus       322 ~v~~~~g~l~~~d~  335 (376)
T 3q7m_A          322 VVGDSEGYLHWINV  335 (376)
T ss_dssp             EEECTTSEEEEEET
T ss_pred             EEEeCCCeEEEEEC
Confidence            88888998888875

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.08  E-value=0.00058  Score=55.35  Aligned_cols=152  Identities=9%  Similarity=0.083  Sum_probs=103.4

Q ss_pred             CCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEe--ec----cC--CCeEEEEE---CCCCCEEEEEcC-------
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKW--QA----HD--GLILKVAW---CSSTDLILSGGE-------  142 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~--~~----~~--~~v~~~~~---~~~~~~l~~~~~-------  142 (323)
                      -.-.+++|.+....+.+++-..+.|..|+..+. ...+  ..    ..  ..+..+.|   .|+++++++...       
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~   92 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA   92 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence            344578898877888888766689999998744 2222  11    11  13579999   588777775431       


Q ss_pred             ------CCceEeeeEEeCC----CCeeeEee--c-----------CCCceeEEEEecCCCEEEEEeC--CeEEEEeCCCC
Q psy11524        143 ------DCKYKASFVWDTD----GRQLYSSL--T-----------HDHPISSLAWAPGGDMFAVGSY--NTLRLCDKVGW  197 (323)
Q Consensus       143 ------d~~i~~i~v~d~~----~~~~~~~~--~-----------~~~~v~~~~~~p~~~~l~~~~~--~~i~i~d~~~~  197 (323)
                            +..+.   .+|+.    ++.+....  .           .......++..++|+..++++.  +.|..++..+.
T Consensus        93 g~~~~g~~~v~---~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           93 DQSSHGASSFH---SFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK  169 (334)
T ss_dssp             SCCSSSCCEEE---EEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred             ccccCCCCEEE---EEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence                  45677   99987    55554432  1           1135889999999998887765  47777777765


Q ss_pred             eeeec--C----CCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCC
Q psy11524        198 SHSLD--K----PDTGSVYDLVWSNDATQIAGACANV-IHIFDISS  236 (323)
Q Consensus       198 ~~~~~--~----~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~  236 (323)
                      .....  .    ......+.++++|+|+.|++....+ |.-+|+..
T Consensus       170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            33321  1    1122367999999999888887778 99999884

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.07  E-value=0.00045  Score=62.63  Aligned_cols=219  Identities=12%  Similarity=0.042  Sum_probs=123.9

Q ss_pred             CCeEEEEeeCCeEEEEeCCCCc--eeEeeccC-CCeEEEEECC--CCCEEEEEcC------CCceEeeeEEeC-CCCeee
Q psy11524         93 SNKVLLTQAKSLVIKPLSPNNK--ATKWQAHD-GLILKVAWCS--STDLILSGGE------DCKYKASFVWDT-DGRQLY  160 (323)
Q Consensus        93 ~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~-~~v~~~~~~~--~~~~l~~~~~------d~~i~~i~v~d~-~~~~~~  160 (323)
                      +..+++++.+ +.|+.+|..+.  +-.+.... .....+.-+|  .+..++++..      +|.|.   .+|. +++.+.
T Consensus       117 ~~~v~v~~~d-g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~---a~D~~tG~~~W  192 (668)
T 1kv9_A          117 GDKVYVGTLD-GRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVS---AYDADTGKLAW  192 (668)
T ss_dssp             BTEEEEECTT-SEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEE---EEETTTCCEEE
T ss_pred             CCEEEEEcCC-CEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEE---EEECCCCcEEE
Confidence            4566666555 58888887654  22222110 0000001111  1334555543      47888   9998 477776


Q ss_pred             EeecCC-------------------------------CceeEEEEecCCCEEEEEeCC-e-------------------E
Q psy11524        161 SSLTHD-------------------------------HPISSLAWAPGGDMFAVGSYN-T-------------------L  189 (323)
Q Consensus       161 ~~~~~~-------------------------------~~v~~~~~~p~~~~l~~~~~~-~-------------------i  189 (323)
                      .+....                               .....++++|+...++.++.+ .                   |
T Consensus       193 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v  272 (668)
T 1kv9_A          193 RFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSI  272 (668)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred             EecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence            664211                               011246888887788777653 3                   8


Q ss_pred             EEEeCCCCeee-ec--CCCC-------ccEEEEEEcCCCC---EEEEEecCc-EEEEEcCCCceeeeecCCCC-------
Q psy11524        190 RLCDKVGWSHS-LD--KPDT-------GSVYDLVWSNDAT---QIAGACANV-IHIFDISSSSSSNVTAPLSH-------  248 (323)
Q Consensus       190 ~i~d~~~~~~~-~~--~~~~-------~~v~~~~~~~~~~---~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~-------  248 (323)
                      ..+|.++.+.. ..  ..|.       .+.....+..+|+   .++.++.++ ++++|.++|+.+....+...       
T Consensus       273 ~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d  352 (668)
T 1kv9_A          273 LAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVD  352 (668)
T ss_dssp             EEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEEC
T ss_pred             EEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccc
Confidence            89998754433 21  1122       2233333334665   688888999 99999999998743211110       


Q ss_pred             ---ccce------------------------EEEEEccCCC---------------------------------------
Q psy11524        249 ---SHEI------------------------TQLAVNQTGS---------------------------------------  262 (323)
Q Consensus       249 ---~~~v------------------------~~~~~~p~g~---------------------------------------  262 (323)
                         ..++                        ..++++|+..                                       
T Consensus       353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p  432 (668)
T 1kv9_A          353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP  432 (668)
T ss_dssp             TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred             cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence               0000                        0134444321                                       


Q ss_pred             --CccceEEEEeCCCCeEEEecccccCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        263 --LQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       263 --~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                        ..++.|..+|......+|....      ........+...+.+++.++.||.++.|+..
T Consensus       433 ~~~~~g~l~A~D~~tG~~~W~~~~------~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~  487 (668)
T 1kv9_A          433 AAVVSGALLAWDPVKQKAAWKVPY------PTHWNGGTLSTAGNLVFQGTAAGQMHAYSAD  487 (668)
T ss_dssp             GGGCEEEEEEEETTTTEEEEEEEE------SSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             CCCccceEEEEeCCCCcEEEEccC------CCCCcCceeEeCCCEEEEECCcccchhhhhh
Confidence              0125677788777777787765      3333444455678889999999999999853

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.07  E-value=0.00023  Score=60.88  Aligned_cols=150  Identities=7%  Similarity=0.061  Sum_probs=95.6

Q ss_pred             CeEEEEECC-CCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC-----C-eEEEEeCCC
Q psy11524        124 LILKVAWCS-STDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-----N-TLRLCDKVG  196 (323)
Q Consensus       124 ~v~~~~~~~-~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-----~-~i~i~d~~~  196 (323)
                      ....++++| ++..|+++...+.|+   .+|+++..+..+.........++|+++|+.|+++..     . .+..++..+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~---~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTR---LIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEE---EEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEE---EEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC
Confidence            457889998 455666666556777   999988777777666667889999999996666654     2 344455443


Q ss_pred             Cee--eecCCCCccEEEEEEcC-CCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEe
Q psy11524        197 WSH--SLDKPDTGSVYDLVWSN-DATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFID  272 (323)
Q Consensus       197 ~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~  272 (323)
                      ...  ..+. .......++++| +|.++++-..++ |..++...+...... ..........++|+|++    +.|.+.+
T Consensus       215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~-~~~~~~~P~gia~~pdG----~~lyv~d  288 (430)
T 3tc9_A          215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLF-TIQDSGWEFHIQFHPSG----NYAYIVV  288 (430)
T ss_dssp             TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEE-ECSSSSCCEEEEECTTS----SEEEEEE
T ss_pred             ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-EcCCCCcceeEEEcCCC----CEEEEEE
Confidence            211  1111 123467788999 666555555566 999998876542221 12223456789999998    6566665


Q ss_pred             CC-CCeEEEec
Q psy11524        273 KN-RDLYLSMW  282 (323)
Q Consensus       273 ~~-~~~~~~~~  282 (323)
                      .. ..+..++.
T Consensus       289 ~~~~~I~~~~~  299 (430)
T 3tc9_A          289 VNQHYILRSDY  299 (430)
T ss_dssp             TTTTEEEEEEE
T ss_pred             CCCCEEEEEeC
Confidence            43 33444443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.05  E-value=0.0041  Score=55.82  Aligned_cols=155  Identities=8%  Similarity=-0.068  Sum_probs=107.0

Q ss_pred             CCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEee-ccCCCeEEEEECCCCCEEEEEcC--CCceEeeeEEeCCCC
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQ-AHDGLILKVAWCSSTDLILSGGE--DCKYKASFVWDTDGR  157 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~i~v~d~~~~  157 (323)
                      .....+++.+.+..|+.+....+.|.+.++.+. ...+. ..-.....+++.|....|+....  .+.|.   ..++++.
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~---r~~~dG~  156 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKID---RAAMDGS  156 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEE---EEETTSC
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEE---EEeCCCC
Confidence            457789999888888887766678998888766 22332 34456789999996555655542  46677   8888877


Q ss_pred             eeeEeecCCCceeEEEEecCCCEEEEEeC-C-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEec-Cc-EEEEE
Q psy11524        158 QLYSSLTHDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACA-NV-IHIFD  233 (323)
Q Consensus       158 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~-i~iwd  233 (323)
                      ....+...-.....+++++++..|+.+.. . .|..+|+.+.....+.........+++.. + .|+.+.. .+ |...|
T Consensus       157 ~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~-~ly~tD~~~~~I~~~d  234 (628)
T 4a0p_A          157 ERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-D-YIYWTDWSRRSIERAN  234 (628)
T ss_dssp             SCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-T-EEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-C-EEEEecCCCCEEEEEE
Confidence            66665555567889999998888887776 3 99999988653343333334566788765 3 4554444 55 98888


Q ss_pred             cCCCceee
Q psy11524        234 ISSSSSSN  241 (323)
Q Consensus       234 ~~~~~~~~  241 (323)
                      ..+++...
T Consensus       235 k~tg~~~~  242 (628)
T 4a0p_A          235 KTSGQNRT  242 (628)
T ss_dssp             TTTCCSCE
T ss_pred             CCCCCceE
Confidence            77665443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.05  E-value=0.0061  Score=54.75  Aligned_cols=155  Identities=10%  Similarity=0.022  Sum_probs=107.6

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEe-eccCCCeEEEEECCCCCEE-EEEcCCCceEeeeEEeCCCC
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKW-QAHDGLILKVAWCSSTDLI-LSGGEDCKYKASFVWDTDGR  157 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~i~v~d~~~~  157 (323)
                      -..+..++|++.+..|+.+....+.|+.++..+. ...+ ......+..+++.+.+..| .+-...+.|.   +.++++.
T Consensus        36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~---v~~~dG~  112 (628)
T 4a0p_A           36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIE---VSKLDGQ  112 (628)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEE---EEETTST
T ss_pred             CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEE---EEecCCC
Confidence            4568899999988888888766678888877654 3332 2222456788888765555 4444567888   9999876


Q ss_pred             eeeEee-cCCCceeEEEEecCCCEEEEEeC---CeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc--EEE
Q psy11524        158 QLYSSL-THDHPISSLAWAPGGDMFAVGSY---NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV--IHI  231 (323)
Q Consensus       158 ~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~---~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--i~i  231 (323)
                      ....+. ..-.....++++|....|+....   +.|...++.+.....+...-.....++++++++.|+.+....  |..
T Consensus       113 ~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~  192 (628)
T 4a0p_A          113 HRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIES  192 (628)
T ss_dssp             TCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEE
Confidence            554443 34456789999996556666553   388888888764443333456789999999877777776544  999


Q ss_pred             EEcCCCc
Q psy11524        232 FDISSSS  238 (323)
Q Consensus       232 wd~~~~~  238 (323)
                      +|+....
T Consensus       193 ~d~dG~~  199 (628)
T 4a0p_A          193 SNMLGLN  199 (628)
T ss_dssp             EETTSCS
T ss_pred             EcCCCCc
Confidence            9986543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.02  E-value=0.00033  Score=63.50  Aligned_cols=112  Identities=14%  Similarity=0.227  Sum_probs=70.7

Q ss_pred             EEEEcC-CCCeEEEEeeCC----------eEEEEeCCCCc----eeEeec-cCCCeEEEEECCCCCEEEEEcC-CCceEe
Q psy11524         86 SAAWSP-DSNKVLLTQAKS----------LVIKPLSPNNK----ATKWQA-HDGLILKVAWCSSTDLILSGGE-DCKYKA  148 (323)
Q Consensus        86 ~~~~sp-~~~~l~~~~~~~----------~~v~~~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-d~~i~~  148 (323)
                      ++++.| +++.+++|+.+.          ..+.+||....    +..+.. +.....++++.+++++++.|+. +..+. 
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~-  268 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS-  268 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE-
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE-
Confidence            566777 888888876432          26888988765    222221 2333445778889999999985 45677 


Q ss_pred             eeEEeCCCCeeeEeecC--CCceeEEEEecCCCEEEEEeC-------CeEEEEeCCCCeee
Q psy11524        149 SFVWDTDGRQLYSSLTH--DHPISSLAWAPGGDMFAVGSY-------NTLRLCDKVGWSHS  200 (323)
Q Consensus       149 i~v~d~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~~~~~-------~~i~i~d~~~~~~~  200 (323)
                        +||.....-..+...  ...-.+++..++|++++.|+.       +.+.+||.....-.
T Consensus       269 --~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          269 --LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  327 (656)
T ss_dssp             --EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             --EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence              999864443333221  111234566678999999883       25899998765433

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.02  E-value=0.002  Score=52.68  Aligned_cols=176  Identities=11%  Similarity=0.115  Sum_probs=111.0

Q ss_pred             CCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecC----CCE--EEEEe--C--C-eEEEEeC--CCCeee
Q psy11524        134 TDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPG----GDM--FAVGS--Y--N-TLRLCDK--VGWSHS  200 (323)
Q Consensus       134 ~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~----~~~--l~~~~--~--~-~i~i~d~--~~~~~~  200 (323)
                      ..+++...+.+.+.   +||++++.+..+..  +.++.+..-|+    |+.  ++.++  .  + +|.+|++  ....+.
T Consensus        40 ~s~ii~t~k~~gL~---Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~  114 (355)
T 3amr_A           40 NSKLITTNKKSGLV---VYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (355)
T ss_dssp             GCEEEEEETTTEEE---EEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred             ccEEEEEcCCCCEE---EEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence            35666667778888   99999999988754  56777777663    332  33332  3  3 8999976  343444


Q ss_pred             ecCC------CC-ccEEEEEE--cCC-CC-EEEEEecCc-EEEEEcC---C----CceeeeecCCCCccceEEEEEccCC
Q psy11524        201 LDKP------DT-GSVYDLVW--SND-AT-QIAGACANV-IHIFDIS---S----SSSSNVTAPLSHSHEITQLAVNQTG  261 (323)
Q Consensus       201 ~~~~------~~-~~v~~~~~--~~~-~~-~l~~~~~d~-i~iwd~~---~----~~~~~~~~~~~~~~~v~~~~~~p~g  261 (323)
                      ....      .. ..+..+++  +|. ++ ++++...++ +..|++.   .    .+.++++  . ....+..+...+..
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f--~-lgsq~EgcvvDd~~  191 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF--K-MNSQTEGMAADDEY  191 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE--E-CSSCEEEEEEETTT
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe--c-CCCCcceEEEcCCC
Confidence            3321      11 55777888  774 54 677778888 9888872   2    3445553  2 23467788888877


Q ss_pred             CCccceEEEEeCCCCeEEEecccc---------cC-CCC-ccceeEEEE--eeCCC-eeEeee-cCCeEEEEEee
Q psy11524        262 SLQERHVAFIDKNRDLYLSMWSHS---------LD-KPD-TGSVYDLVW--SSDAT-QIAGAC-ANGSLLLGTII  321 (323)
Q Consensus       262 ~~~d~~l~~~~~~~~~~~~~~~~~---------~~-~~~-~~~v~~~~~--s~~g~-~l~s~~-~dg~i~~~~l~  321 (323)
                          +.|.+...+..+..++....         .. ..+ ...+..|++  .++|+ +|++++ .+.+..+|+..
T Consensus       192 ----g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          192 ----GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             ----TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             ----CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence                88999888865444443211         11 111 246788888  45555 565555 56788888763

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.97  E-value=0.0052  Score=50.95  Aligned_cols=99  Identities=11%  Similarity=0.153  Sum_probs=59.1

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEe---e---ccCCCeEEEEECCC---CCEEEEEcC-C-----Cc
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKW---Q---AHDGLILKVAWCSS---TDLILSGGE-D-----CK  145 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~---~---~~~~~v~~~~~~~~---~~~l~~~~~-d-----~~  145 (323)
                      -.....|+|.|+|+.++ +... +.|+.++ .+....+   .   ........++|+|+   +..|+.+.. .     +.
T Consensus        30 l~~P~~ia~~pdG~l~V-~e~~-g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLI-AERP-GRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCEEE-EETT-TEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeEEE-EeCC-CeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            45678999999998554 4334 6888887 3332211   1   12356889999998   555554433 2     45


Q ss_pred             eEeeeEEeCCCCee------e-Eee---cCCCceeEEEEecCCCEEEEEe
Q psy11524        146 YKASFVWDTDGRQL------Y-SSL---THDHPISSLAWAPGGDMFAVGS  185 (323)
Q Consensus       146 i~~i~v~d~~~~~~------~-~~~---~~~~~v~~~~~~p~~~~l~~~~  185 (323)
                      |.   .++.++..+      . .+.   ........++|.|||.++++.+
T Consensus       107 v~---r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          107 VV---RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EE---EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EE---EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            66   777754211      1 122   1112346899999997766643

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.96  E-value=0.0052  Score=55.09  Aligned_cols=156  Identities=11%  Similarity=0.007  Sum_probs=105.9

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeE-eeccCCCeEEEEECCCCCEEE-EEcCCCceEeeeEEeCC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATK-WQAHDGLILKVAWCSSTDLIL-SGGEDCKYKASFVWDTD  155 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~-~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~i~v~d~~  155 (323)
                      .......++|++.+..|+.+....+.|+.++..+.  ... +...-..+..+++.+.+..|+ +-...+.|.   +.+++
T Consensus        38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~---v~~~d  114 (619)
T 3s94_A           38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIE---VSNLD  114 (619)
T ss_dssp             CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE---EEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEE---EEECC
Confidence            45668899999988888887665567887777654  122 232335788999998655444 445678888   99998


Q ss_pred             CCeeeEee-cCCCceeEEEEecCCCEEEEEeC--C-eEEEEeCCCCeee-ecCCCCccEEEEEEcCCCCEEEEEecC-c-
Q psy11524        156 GRQLYSSL-THDHPISSLAWAPGGDMFAVGSY--N-TLRLCDKVGWSHS-LDKPDTGSVYDLVWSNDATQIAGACAN-V-  228 (323)
Q Consensus       156 ~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~--~-~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d-~-  228 (323)
                      +.....+. ........++++|.+..|+.+..  . .|...++.+.... .....-.....++++++++.|+.+... + 
T Consensus       115 G~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~  194 (619)
T 3s94_A          115 GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF  194 (619)
T ss_dssp             SCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCe
Confidence            77665554 34456789999997666666654  3 7777788765333 332344568999999987777766554 4 


Q ss_pred             EEEEEcCCCc
Q psy11524        229 IHIFDISSSS  238 (323)
Q Consensus       229 i~iwd~~~~~  238 (323)
                      |..+|+....
T Consensus       195 I~~~~~dG~~  204 (619)
T 3s94_A          195 IHKSNLDGTN  204 (619)
T ss_dssp             EEEESSSCCE
T ss_pred             EEEecCCCCc
Confidence            9999976543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.91  E-value=9e-05  Score=67.49  Aligned_cols=155  Identities=8%  Similarity=-0.053  Sum_probs=97.2

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCC-----ceeE-eeccCCCeEEEEECCCC-CEEEEEcCCCceEeeeEE
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN-----KATK-WQAHDGLILKVAWCSST-DLILSGGEDCKYKASFVW  152 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~-----~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~i~v~  152 (323)
                      ....+..++|++.+..|+.+....+.|+.+++.+     .... +.........|++.+.+ +++++-...+.|.   +.
T Consensus       404 ~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~---v~  480 (699)
T 1n7d_A          404 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS---VA  480 (699)
T ss_dssp             CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEE---EE
T ss_pred             cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEE---EE
Confidence            3455678899998888887755555677776654     1111 11122234567887644 4444445567888   99


Q ss_pred             eCCCCeeeEeec-CCCceeEEEEecCCCEEEEEeC---CeEEEEeCCCCeeeec-CCCCccEEEEEEcCCCCEEEEEec-
Q psy11524        153 DTDGRQLYSSLT-HDHPISSLAWAPGGDMFAVGSY---NTLRLCDKVGWSHSLD-KPDTGSVYDLVWSNDATQIAGACA-  226 (323)
Q Consensus       153 d~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~---~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-  226 (323)
                      ++++.....+.. .......++++|.+..|+.+..   +.|..+++.+.....+ ...-.....++|+|++..|+.+.. 
T Consensus       481 d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~  560 (699)
T 1n7d_A          481 DTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK  560 (699)
T ss_dssp             BSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETT
T ss_pred             ecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecC
Confidence            998766555533 2345678999997655555443   3788888776533322 223345778999998766666554 


Q ss_pred             Cc-EEEEEcCCC
Q psy11524        227 NV-IHIFDISSS  237 (323)
Q Consensus       227 d~-i~iwd~~~~  237 (323)
                      .+ |..+|+...
T Consensus       561 ~~~I~~~d~dG~  572 (699)
T 1n7d_A          561 LHSISSIDVNGG  572 (699)
T ss_dssp             TTEEEEECSSSS
T ss_pred             CCeEEEEccCCC
Confidence            44 999998643

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.90  E-value=0.0066  Score=49.75  Aligned_cols=218  Identities=13%  Similarity=0.124  Sum_probs=119.0

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeE--ee--ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATK--WQ--AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT  154 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~--~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~  154 (323)
                      ....+.++.|.+++..++++ .. +.|+.....++ -..  ..  .....+.++.|.+ +..++ ++..+.|.   . ..
T Consensus        34 ~~~~~~~v~~~~~~~~~~~G-~~-g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~---~-S~  105 (327)
T 2xbg_A           34 TTATILDMSFIDRHHGWLVG-VN-ATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIML---H-TT  105 (327)
T ss_dssp             CSSCEEEEEESSSSCEEEEE-TT-TEEEEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEE---E-ES
T ss_pred             CCCcEEEEEECCCCcEEEEc-CC-CeEEEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEE---E-EC
Confidence            45689999998888777744 44 45544333332 111  11  1244688899976 44444 45566554   3 33


Q ss_pred             C-CCeeeEee---cCCCceeEEEEecCCCEEEEEeCCeE-EEEeC-CCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc
Q psy11524        155 D-GRQLYSSL---THDHPISSLAWAPGGDMFAVGSYNTL-RLCDK-VGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV  228 (323)
Q Consensus       155 ~-~~~~~~~~---~~~~~v~~~~~~p~~~~l~~~~~~~i-~i~d~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  228 (323)
                      + ++.-....   .....+..+.+.++++.++++..+.| +-.|- .+.... ..+....+..+++.|++.+++.+..+.
T Consensus       106 DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~-~~~~~~~~~~~~~~~~~~~~~~g~~G~  184 (327)
T 2xbg_A          106 DGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQAL-VQEAIGVMRNLNRSPSGEYVAVSSRGS  184 (327)
T ss_dssp             STTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEE-ECSCCCCEEEEEECTTSCEEEEETTSS
T ss_pred             CCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEe-ecCCCcceEEEEEcCCCcEEEEECCCc
Confidence            3 22222222   12345778888777777766655544 33332 122222 233456789999999988777665545


Q ss_pred             -EEEEEc--CCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----cC-C--CCccceeEE
Q psy11524        229 -IHIFDI--SSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----LD-K--PDTGSVYDL  297 (323)
Q Consensus       229 -i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----~~-~--~~~~~v~~~  297 (323)
                       .+-.|-  .+.+.+.    ......+..+++.+++    . +.+...++.+.......+     +. .  .+...+.++
T Consensus       185 ~~~S~d~gG~tW~~~~----~~~~~~~~~~~~~~~g----~-~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v  255 (327)
T 2xbg_A          185 FYSTWEPGQTAWEPHN----RTTSRRLHNMGFTPDG----R-LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDL  255 (327)
T ss_dssp             EEEEECTTCSSCEEEE----CCSSSCEEEEEECTTS----C-EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEE
T ss_pred             EEEEeCCCCCceeECC----CCCCCccceeEECCCC----C-EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEE
Confidence             555552  2223332    2344578888998886    3 334444444443321101     11 1  112458899


Q ss_pred             EEeeCCCeeEeeecCCeEE
Q psy11524        298 VWSSDATQIAGACANGSLL  316 (323)
Q Consensus       298 ~~s~~g~~l~s~~~dg~i~  316 (323)
                      ++.+++..++++. +|.|.
T Consensus       256 ~~~~~~~~~~~g~-~g~i~  273 (327)
T 2xbg_A          256 AYRTPNEVWLAGG-AGALL  273 (327)
T ss_dssp             EESSSSCEEEEES-TTCEE
T ss_pred             EecCCCEEEEEeC-CCeEE
Confidence            9998877666554 66553

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.87  E-value=0.0051  Score=49.76  Aligned_cols=160  Identities=15%  Similarity=0.051  Sum_probs=98.5

Q ss_pred             EEEcCCCCeEEEEeeC-------------CeEEEEeCCCCcee-EeeccCCCeEEEEECCCCCEEEEEc--CCCceEeee
Q psy11524         87 AAWSPDSNKVLLTQAK-------------SLVIKPLSPNNKAT-KWQAHDGLILKVAWCSSTDLILSGG--EDCKYKASF  150 (323)
Q Consensus        87 ~~~sp~~~~l~~~~~~-------------~~~v~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~i~  150 (323)
                      --++++|++|+.+...             +..|+..++.+... .+....    +..|+++++.|+-..  .++.-. |+
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~-Iy  132 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP----CIYASLIGNYIYYLHYDTQTATS-LY  132 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC----EEEEEEETTEEEEEEESSSSCEE-EE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC----ccEEEEeCCEEEEEeecCCCCce-EE
Confidence            4468899999998754             24677777766532 232221    236778898888776  333332 22


Q ss_pred             EEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC-C-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc
Q psy11524        151 VWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV  228 (323)
Q Consensus       151 v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  228 (323)
                      ..++++.....+..+..    .+++|+++.|+..+. . +|+..++.+...+.+..  +... ..+.|++.+|+-...+.
T Consensus       133 ~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~  205 (302)
T 3s25_A          133 RIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNR  205 (302)
T ss_dssp             EEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGG
T ss_pred             EEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCC
Confidence            66777776666665543    456888999888776 3 89999998765444322  2222 34569898888776543


Q ss_pred             ---EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEE
Q psy11524        229 ---IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVA  269 (323)
Q Consensus       229 ---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~  269 (323)
                         |..-++..... ..  +...  .+  ..|+|++    +.|.
T Consensus       206 ~~~I~~~~ldG~~~-~~--Lt~~--~~--~~~~~~g----~~Iy  238 (302)
T 3s25_A          206 DNAIVHVNINNPNP-VV--LTEA--NI--EHYNVYG----SLIF  238 (302)
T ss_dssp             TTEEEEECSSSCCC-EE--CSCS--CE--EEEEEET----TEEE
T ss_pred             CcEEEEEECCCCCe-EE--EeCC--Cc--ceEEECC----CEEE
Confidence               66666665443 22  3322  22  3477887    5563

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.80  E-value=0.0035  Score=54.09  Aligned_cols=144  Identities=14%  Similarity=0.082  Sum_probs=89.0

Q ss_pred             CeEEEEECC-CCCEEEEEcC-CCceEeeeEEeCCCCeeeEeecCC----CceeEEEE-------ecCCCEEEEEeC-C-e
Q psy11524        124 LILKVAWCS-STDLILSGGE-DCKYKASFVWDTDGRQLYSSLTHD----HPISSLAW-------APGGDMFAVGSY-N-T  188 (323)
Q Consensus       124 ~v~~~~~~~-~~~~l~~~~~-d~~i~~i~v~d~~~~~~~~~~~~~----~~v~~~~~-------~p~~~~l~~~~~-~-~  188 (323)
                      ....|+|.| ++..|+.+.. .+.|+   +.|++.+.+..+....    .....++|       +++|+.|+++.. + .
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~---~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~  216 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQ---LIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK  216 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEE---EEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEE---EEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence            467899998 3554555443 45677   9999887777765432    25789999       999997777765 3 2


Q ss_pred             ------EEEEeCCC-Cee------eecCCCCccEEEEEEcCCCCEEEE-EecCc-EEEEEcC-------CCce-------
Q psy11524        189 ------LRLCDKVG-WSH------SLDKPDTGSVYDLVWSNDATQIAG-ACANV-IHIFDIS-------SSSS-------  239 (323)
Q Consensus       189 ------i~i~d~~~-~~~------~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~-i~iwd~~-------~~~~-------  239 (323)
                            +.+++... ...      .... .......++++|++..|+. -..++ |..+|+.       ++..       
T Consensus       217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~  295 (496)
T 3kya_A          217 GDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN  295 (496)
T ss_dssp             GGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred             cccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence                  66776333 111      1111 1124567889995555554 44566 9999987       5543       


Q ss_pred             ----eeeecCCCCccceEEEEEccCCCCccceEEEEeCCC
Q psy11524        240 ----SNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNR  275 (323)
Q Consensus       240 ----~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~  275 (323)
                          ...+...........++|+|+|    +.|.+.+...
T Consensus       296 ~~g~~~~l~~~~~~~~p~~ia~~p~G----~~lYvaD~~~  331 (496)
T 3kya_A          296 NPNTFKQLFTIADPSWEFQIFIHPTG----KYAYFGVINN  331 (496)
T ss_dssp             CTTTEEEEEECSSSSCCEEEEECTTS----SEEEEEETTT
T ss_pred             cccccceeEecCCCCCceEEEEcCCC----CEEEEEeCCC
Confidence                1111011223456789999998    6677776543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.75  E-value=0.012  Score=48.18  Aligned_cols=164  Identities=10%  Similarity=0.073  Sum_probs=98.1

Q ss_pred             CCCeEEEEeeCCeEEEEeCCCCceeEeeccCCCeEEEEECCC----CC---EEEEEc-C--CCceEeeeEEeC--CCCee
Q psy11524         92 DSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSS----TD---LILSGG-E--DCKYKASFVWDT--DGRQL  159 (323)
Q Consensus        92 ~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~-~--d~~i~~i~v~d~--~~~~~  159 (323)
                      ....+ .+....+-+.+||+.++....... +.++.+..-|+    |+   ++++.. .  +++|.   +|++  ..+.+
T Consensus        39 ~~s~i-i~t~k~~gL~Vydl~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~---vf~iDp~~~~l  113 (355)
T 3amr_A           39 QNSKL-ITTNKKSGLVVYSLDGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIE---IYAIDGKNGTL  113 (355)
T ss_dssp             GGCEE-EEEETTTEEEEEETTSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEE---EEEECTTTCCE
T ss_pred             CccEE-EEEcCCCCEEEEcCCCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEE---EEEECCCCCce
Confidence            33444 455555689999998774433222 66777777663    22   233333 3  57888   9966  44555


Q ss_pred             eEeec------CC-CceeEEEE--ecC-CCE-EEEEeC-CeEEEEeCC---CC-----eeeecCCCCccEEEEEEcCCCC
Q psy11524        160 YSSLT------HD-HPISSLAW--APG-GDM-FAVGSY-NTLRLCDKV---GW-----SHSLDKPDTGSVYDLVWSNDAT  219 (323)
Q Consensus       160 ~~~~~------~~-~~v~~~~~--~p~-~~~-l~~~~~-~~i~i~d~~---~~-----~~~~~~~~~~~v~~~~~~~~~~  219 (323)
                      ..+..      .. ..+..+++  +|. +.+ +++... +.+..|++.   ..     .+..+ ...+.+..+...+...
T Consensus       114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f-~lgsq~EgcvvDd~~g  192 (355)
T 3amr_A          114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF-KMNSQTEGMAADDEYG  192 (355)
T ss_dssp             EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE-ECSSCEEEEEEETTTT
T ss_pred             eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe-cCCCCcceEEEcCCCC
Confidence            55522      11 56777888  774 554 444444 488888762   11     12222 2456788999999888


Q ss_pred             EEEEEecCc-EEEEEcC-----CCceeeeecCCCCccceEEEEE--ccCC
Q psy11524        220 QIAGACANV-IHIFDIS-----SSSSSNVTAPLSHSHEITQLAV--NQTG  261 (323)
Q Consensus       220 ~l~~~~~d~-i~iwd~~-----~~~~~~~~~~~~~~~~v~~~~~--~p~g  261 (323)
                      +|+.+-++. |+.+|.+     +++.+...........+..+++  .+++
T Consensus       193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g  242 (355)
T 3amr_A          193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADG  242 (355)
T ss_dssp             EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGG
T ss_pred             eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCC
Confidence            999999998 9999865     3445544111122246778877  4444

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.74  E-value=0.0036  Score=56.80  Aligned_cols=155  Identities=14%  Similarity=0.186  Sum_probs=94.6

Q ss_pred             EEEEcCCCCeEEEEeeCCe------------------EEEEeCCCCcee--Eeec--cC-------CCeEEEEECCCCC-
Q psy11524         86 SAAWSPDSNKVLLTQAKSL------------------VIKPLSPNNKAT--KWQA--HD-------GLILKVAWCSSTD-  135 (323)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~------------------~v~~~~~~~~~~--~~~~--~~-------~~v~~~~~~~~~~-  135 (323)
                      .++++|++..++++..+..                  .|..+|..+...  .++.  |.       .++....+..+|+ 
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~  313 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP  313 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence            4788888888887765421                  488888766522  2221  22       2222223333665 


Q ss_pred             --EEEEEcCCCceEeeeEEeCC-CCeeeEeecCC------------Cc------------------------eeEEEEec
Q psy11524        136 --LILSGGEDCKYKASFVWDTD-GRQLYSSLTHD------------HP------------------------ISSLAWAP  176 (323)
Q Consensus       136 --~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~------------~~------------------------v~~~~~~p  176 (323)
                        .++.++.+|.+.   ++|.+ ++.+.......            .+                        -..++++|
T Consensus       314 ~~~v~~~~~~G~l~---~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp  390 (668)
T 1kv9_A          314 RKVLMQAPKNGFFY---VLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP  390 (668)
T ss_dssp             EEEEEECCTTSEEE---EEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET
T ss_pred             EEEEEEECCCCEEE---EEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECC
Confidence              688899999999   99985 55553221110            00                        01267888


Q ss_pred             CCCEEEEEe------------------------------------C-CeEEEEeCCCCeeeecCCCCccEEEEEEcCCCC
Q psy11524        177 GGDMFAVGS------------------------------------Y-NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDAT  219 (323)
Q Consensus       177 ~~~~l~~~~------------------------------------~-~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (323)
                      +...+++..                                    . +.|..||+.+.++..............+...+.
T Consensus       391 ~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg  470 (668)
T 1kv9_A          391 GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGN  470 (668)
T ss_dssp             TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTT
T ss_pred             CCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCC
Confidence            766655421                                    2 378899987655443222223333334444677


Q ss_pred             EEEEEecCc-EEEEEcCCCceeeee
Q psy11524        220 QIAGACANV-IHIFDISSSSSSNVT  243 (323)
Q Consensus       220 ~l~~~~~d~-i~iwd~~~~~~~~~~  243 (323)
                      ++++++.|+ ++.||.++++.+..+
T Consensus       471 ~vf~g~~dg~l~a~d~~tG~~l~~~  495 (668)
T 1kv9_A          471 LVFQGTAAGQMHAYSADKGEALWQF  495 (668)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEECCcccchhhhhhcChhheEe
Confidence            888999999 999999999998874

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.73  E-value=0.001  Score=60.29  Aligned_cols=222  Identities=7%  Similarity=-0.045  Sum_probs=115.6

Q ss_pred             CEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCcee-Eeec-cCC-CeEEEEECCCCCEEEEEc-CC-----CceEeeeEEe
Q psy11524         83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKAT-KWQA-HDG-LILKVAWCSSTDLILSGG-ED-----CKYKASFVWD  153 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~-~~~~-~~~-~v~~~~~~~~~~~l~~~~-~d-----~~i~~i~v~d  153 (323)
                      ...++++.++|+.+++|+.+...+++||.....- .+.. ... .-.+++..++++.++.|+ .+     ..+.   +||
T Consensus       244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e---~yd  320 (656)
T 1k3i_A          244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGE---VYS  320 (656)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEE---EEE
T ss_pred             ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccce---EeC
Confidence            3445788899999999886656789998765521 1111 111 113456677899999988 34     3456   999


Q ss_pred             CCCCeeeEeecC-----CCceeEEEEecCCCEEEEEe----------CCeEEEEeCCCCee-eecCCC---------Ccc
Q psy11524        154 TDGRQLYSSLTH-----DHPISSLAWAPGGDMFAVGS----------YNTLRLCDKVGWSH-SLDKPD---------TGS  208 (323)
Q Consensus       154 ~~~~~~~~~~~~-----~~~v~~~~~~p~~~~l~~~~----------~~~i~i~d~~~~~~-~~~~~~---------~~~  208 (323)
                      .....-..+...     ...-....+..++..++.++          .+.+..||...... ......         ...
T Consensus       321 ~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~  400 (656)
T 1k3i_A          321 PSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMC  400 (656)
T ss_dssp             TTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBT
T ss_pred             CCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCC
Confidence            975544443110     00000011223444444443          23678888764321 111111         112


Q ss_pred             EEEEEEcC-CCCEEEEEecC------------cEEEEEcCCCceeeee-cCCCCccceEEEEEccCCCCccceEEEEeCC
Q psy11524        209 VYDLVWSN-DATQIAGACAN------------VIHIFDISSSSSSNVT-APLSHSHEITQLAVNQTGSLQERHVAFIDKN  274 (323)
Q Consensus       209 v~~~~~~~-~~~~l~~~~~d------------~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~  274 (323)
                      -.++.+.. +++.++.|+.+            .+.+||..+.+..... ........-.+++..|++    ..+.++..+
T Consensus       401 ~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g----~i~v~GG~~  476 (656)
T 1k3i_A          401 GNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDG----STFITGGQR  476 (656)
T ss_dssp             CEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTS----CEEEECCBS
T ss_pred             CceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCC----CEEEECCcc
Confidence            23444443 67777777632            1567777766544331 001111122345566776    555555432


Q ss_pred             -----------CCeEEEecccc----c--CCCCccceeEEEEeeCCCeeEeeec
Q psy11524        275 -----------RDLYLSMWSHS----L--DKPDTGSVYDLVWSSDATQIAGACA  311 (323)
Q Consensus       275 -----------~~~~~~~~~~~----~--~~~~~~~v~~~~~s~~g~~l~s~~~  311 (323)
                                 ..+.+|+....    +  .......-....+.|+|+.++.|+.
T Consensus       477 ~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          477 RGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             BCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             cCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                       34667776553    1  1111122234456789999998885

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.72  E-value=0.00019  Score=65.36  Aligned_cols=156  Identities=10%  Similarity=-0.058  Sum_probs=97.9

Q ss_pred             CEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCce-eEee-ccCCCeEEEEECCCCCEEEEEcC--CCceEeeeEEeCCCCe
Q psy11524         83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKA-TKWQ-AHDGLILKVAWCSSTDLILSGGE--DCKYKASFVWDTDGRQ  158 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~-~~~~-~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~i~v~d~~~~~  158 (323)
                      ....|++.+.+..|+++....+.|.+.+..+.. ..+. ........+++.|.+..|+.+..  .+.|.   +.++++..
T Consensus       454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~---~~~~dG~~  530 (699)
T 1n7d_A          454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIK---KGGLNGVD  530 (699)
T ss_dssp             -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEE---BCCSSSCC
T ss_pred             CcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEE---EEeCCCCC
Confidence            356788887666676665555678888877663 3332 22345678899997665555443  26777   88887655


Q ss_pred             eeEee-cCCCceeEEEEecCCCEEEEEeC-C-eEEEEeCCCCeeeecCC---CCccEEEEEEcCCCCEEEEEecCc-EEE
Q psy11524        159 LYSSL-THDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSHSLDKP---DTGSVYDLVWSNDATQIAGACANV-IHI  231 (323)
Q Consensus       159 ~~~~~-~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~-i~i  231 (323)
                      ...+. ..-.....|+|+|++..|+.+.. . .|..+|+.+.....+..   .......+++..+ .++++....+ |..
T Consensus       531 ~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~  609 (699)
T 1n7d_A          531 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFS  609 (699)
T ss_dssp             CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEE
T ss_pred             eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEE
Confidence            44442 22345678999998777776666 4 99999987653333221   1233455666554 3333444455 999


Q ss_pred             EEcCCCceeee
Q psy11524        232 FDISSSSSSNV  242 (323)
Q Consensus       232 wd~~~~~~~~~  242 (323)
                      +|..+++.+..
T Consensus       610 ~d~~~G~~~~~  620 (699)
T 1n7d_A          610 ANRLTGSDVNL  620 (699)
T ss_dssp             EETTTEEEEEC
T ss_pred             EEccCCCceEE
Confidence            99888887776

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.70  E-value=0.0052  Score=54.60  Aligned_cols=145  Identities=11%  Similarity=0.038  Sum_probs=79.8

Q ss_pred             CCeEEEEeeCCeEEEEeCCCCcee--Eee--ccCC--CeE-EEEECCCCCEEEEEcC------CCceEeeeEEeCC-CCe
Q psy11524         93 SNKVLLTQAKSLVIKPLSPNNKAT--KWQ--AHDG--LIL-KVAWCSSTDLILSGGE------DCKYKASFVWDTD-GRQ  158 (323)
Q Consensus        93 ~~~l~~~~~~~~~v~~~~~~~~~~--~~~--~~~~--~v~-~~~~~~~~~~l~~~~~------d~~i~~i~v~d~~-~~~  158 (323)
                      +..+++++.+ +.++.+|..+...  ...  .+..  .+. ..... ++ .+++++.      ++.|.   .+|.+ ++.
T Consensus       115 ~~~v~v~~~d-g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~---a~D~~tG~~  188 (571)
T 2ad6_A          115 AGQIVKKQAN-GHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVN---AFDLKTGEL  188 (571)
T ss_dssp             TTEEEEECTT-SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEE---EEETTTCCE
T ss_pred             CCEEEEEeCC-CEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEE---EEECCCCcE
Confidence            4566666555 5888888755422  211  1110  111 11111 33 5555554      78888   99985 777


Q ss_pred             eeEeecCCCc--------------------------------------eeEEEEecCCCEEEEEeC--------------
Q psy11524        159 LYSSLTHDHP--------------------------------------ISSLAWAPGGDMFAVGSY--------------  186 (323)
Q Consensus       159 ~~~~~~~~~~--------------------------------------v~~~~~~p~~~~l~~~~~--------------  186 (323)
                      +..+......                                      ...+++.++...++.+..              
T Consensus       189 ~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~  268 (571)
T 2ad6_A          189 KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDN  268 (571)
T ss_dssp             EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred             EEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCc
Confidence            7665432211                                      023567776666665542              


Q ss_pred             ---CeEEEEeCCCCeee-ec--CCCC-------ccEEEEEEcCCCC---EEEEEecCc-EEEEEcCCCceeeee
Q psy11524        187 ---NTLRLCDKVGWSHS-LD--KPDT-------GSVYDLVWSNDAT---QIAGACANV-IHIFDISSSSSSNVT  243 (323)
Q Consensus       187 ---~~i~i~d~~~~~~~-~~--~~~~-------~~v~~~~~~~~~~---~l~~~~~d~-i~iwd~~~~~~~~~~  243 (323)
                         +.|..+|.++.+.. ..  ..|.       ....-+...++|+   .++.++.++ ++++|.++|+.+...
T Consensus       269 ~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~  342 (571)
T 2ad6_A          269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE  342 (571)
T ss_dssp             TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             eeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence               14888998754333 21  1121       1111122334774   567788899 999999999887654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.60  E-value=0.022  Score=47.17  Aligned_cols=137  Identities=12%  Similarity=0.045  Sum_probs=74.9

Q ss_pred             CCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeE----e----eccCCCeEEEEECCC---CCEEEEEc-C-------
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATK----W----QAHDGLILKVAWCSS---TDLILSGG-E-------  142 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~----~----~~~~~~v~~~~~~~~---~~~l~~~~-~-------  142 (323)
                      .....|+|.|+|++|+++.. .+.|++++..+....    +    .........++++|+   +..|+.+. .       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~-~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLR-GGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEET-TTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeC-CceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            45689999999984444434 468888875543211    1    112346789999996   44444442 2       


Q ss_pred             CCceEeeeEEeCCCC-----eeeE-eecC------CCceeEEEEecCCCEEEEEeC--------------CeEEEEeCCC
Q psy11524        143 DCKYKASFVWDTDGR-----QLYS-SLTH------DHPISSLAWAPGGDMFAVGSY--------------NTLRLCDKVG  196 (323)
Q Consensus       143 d~~i~~i~v~d~~~~-----~~~~-~~~~------~~~v~~~~~~p~~~~l~~~~~--------------~~i~i~d~~~  196 (323)
                      ...|.   .++++..     .... +...      ......++|.|||.++++.++              +.|.-+|..+
T Consensus        97 ~~~v~---r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG  173 (353)
T 2g8s_A           97 GTAVG---YGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG  173 (353)
T ss_dssp             EEEEE---EEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred             eeEEE---EEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence            12344   6666421     1111 1111      112457999999966555433              2466666654


Q ss_pred             Ce-------------ee-ecCCCCccEEEEEEcC-CCCEEEE
Q psy11524        197 WS-------------HS-LDKPDTGSVYDLVWSN-DATQIAG  223 (323)
Q Consensus       197 ~~-------------~~-~~~~~~~~v~~~~~~~-~~~~l~~  223 (323)
                      ..             .. ...++ .....++|+| +|++.++
T Consensus       174 ~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          174 EIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             CCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEE
T ss_pred             CCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEE
Confidence            31             11 11122 3477899999 6654444

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.57  E-value=0.024  Score=46.90  Aligned_cols=174  Identities=15%  Similarity=0.132  Sum_probs=91.8

Q ss_pred             CCCEEEEEEcCC---CCeEEEEeeCC-----eEEEEeCCCCc-------ee-Eeec---cCCCeEEEEECCCCCEEEEEc
Q psy11524         81 SPPVYSAAWSPD---SNKVLLTQAKS-----LVIKPLSPNNK-------AT-KWQA---HDGLILKVAWCSSTDLILSGG  141 (323)
Q Consensus        81 ~~~v~~~~~sp~---~~~l~~~~~~~-----~~v~~~~~~~~-------~~-~~~~---~~~~v~~~~~~~~~~~l~~~~  141 (323)
                      ......|+|+|+   +..|+++....     ..|..++....       +. .+..   .......++|.|||.+.++.+
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            467899999998   66666554421     45666665432       11 1221   111236899999997666643


Q ss_pred             CC-------------CceEeeeEEeCCCC-------------eeeEeecCCCceeEEEEec-CCCEEEEEeC-Ce-----
Q psy11524        142 ED-------------CKYKASFVWDTDGR-------------QLYSSLTHDHPISSLAWAP-GGDMFAVGSY-NT-----  188 (323)
Q Consensus       142 ~d-------------~~i~~i~v~d~~~~-------------~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~-~~-----  188 (323)
                      ..             |.|.   .++.++.             ....+...-.....++|+| +++++++-.. +.     
T Consensus       154 ~~~~~~~~~d~~~~~g~I~---ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~  230 (352)
T 2ism_A          154 EVYERELAQDLASLGGKIL---RLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYG  230 (352)
T ss_dssp             CTTCGGGGGCTTCSSSEEE---EECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------C
T ss_pred             CCCCCccccCCCCCceEEE---EEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCC
Confidence            21             4555   6666552             1122221223467889999 6665555433 23     


Q ss_pred             ---EEEEeCCC---C--------------eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCce------ee
Q psy11524        189 ---LRLCDKVG---W--------------SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSS------SN  241 (323)
Q Consensus       189 ---i~i~d~~~---~--------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~------~~  241 (323)
                         |.+....+   +              ..... .+......++| .+|..+++....+ |...++.....      ..
T Consensus       231 ~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~  308 (352)
T 2ism_A          231 HDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVE  308 (352)
T ss_dssp             CCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEE
T ss_pred             CeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchh
Confidence               43332211   0              01111 12234567777 4566555544555 87777654331      11


Q ss_pred             eecCCCCccceEEEEEccCC
Q psy11524        242 VTAPLSHSHEITQLAVNQTG  261 (323)
Q Consensus       242 ~~~~~~~~~~v~~~~~~p~g  261 (323)
                      .  +......+..+++.|+|
T Consensus       309 ~--~~~~~~rp~~v~~~pdG  326 (352)
T 2ism_A          309 T--ALSGFGRLREVQVGPDG  326 (352)
T ss_dssp             E--EEESSCCEEEEEECTTS
T ss_pred             e--ecccCCCeeEEEECCCC
Confidence            2  11223568889999986

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.55  E-value=0.0083  Score=53.45  Aligned_cols=151  Identities=17%  Similarity=0.194  Sum_probs=83.2

Q ss_pred             EEEcCCCCe----EEEEeeCCeEEEEeCCCCceeEe--eccC----CCeE-EEEECCCCCEEEEEc------CCCceEee
Q psy11524         87 AAWSPDSNK----VLLTQAKSLVIKPLSPNNKATKW--QAHD----GLIL-KVAWCSSTDLILSGG------EDCKYKAS  149 (323)
Q Consensus        87 ~~~sp~~~~----l~~~~~~~~~v~~~~~~~~~~~~--~~~~----~~v~-~~~~~~~~~~l~~~~------~d~~i~~i  149 (323)
                      ++++|.+..    +++++.+ +.|+-+|..+....+  ....    ..+. ..... ++ .+++++      .++.|+  
T Consensus       111 ~av~p~~g~~~~rV~v~t~d-g~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~--  185 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLD-GNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLT--  185 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTT-SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEE--
T ss_pred             eEEEecCCcceeEEEEEcCC-CEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEE--
Confidence            455444444    7666555 578888865542221  1111    0111 11111 34 455554      378888  


Q ss_pred             eEEeCC-CCeeeEeecCCCc-------------------------------------e-eEEEEecCCCEEEEEeCC---
Q psy11524        150 FVWDTD-GRQLYSSLTHDHP-------------------------------------I-SSLAWAPGGDMFAVGSYN---  187 (323)
Q Consensus       150 ~v~d~~-~~~~~~~~~~~~~-------------------------------------v-~~~~~~p~~~~l~~~~~~---  187 (323)
                       .+|.+ ++.+..+......                                     + ..+++.++...++.+..+   
T Consensus       186 -A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p  264 (599)
T 1w6s_A          186 -AYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAP  264 (599)
T ss_dssp             -EEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSC
T ss_pred             -EEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCcc
Confidence             99985 7777665432211                                     0 135666766676666542   


Q ss_pred             --------------eEEEEeCCCCeee-e--cCCCCc-------cEEEEEEc-CCC---CEEEEEecCc-EEEEEcCCCc
Q psy11524        188 --------------TLRLCDKVGWSHS-L--DKPDTG-------SVYDLVWS-NDA---TQIAGACANV-IHIFDISSSS  238 (323)
Q Consensus       188 --------------~i~i~d~~~~~~~-~--~~~~~~-------~v~~~~~~-~~~---~~l~~~~~d~-i~iwd~~~~~  238 (323)
                                    .|..+|.++.+.. .  ...|..       ...-+... .+|   +.++.++.++ ++++|.++|+
T Consensus       265 ~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  344 (599)
T 1w6s_A          265 WNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA  344 (599)
T ss_dssp             SCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred             ccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCC
Confidence                          6888898754433 1  222211       11112222 567   4677788899 9999999999


Q ss_pred             eeeee
Q psy11524        239 SSNVT  243 (323)
Q Consensus       239 ~~~~~  243 (323)
                      .+...
T Consensus       345 ~lw~~  349 (599)
T 1w6s_A          345 LVSAN  349 (599)
T ss_dssp             EEEEE
T ss_pred             Eeecc
Confidence            87653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.54  E-value=0.027  Score=46.55  Aligned_cols=147  Identities=9%  Similarity=0.093  Sum_probs=89.2

Q ss_pred             CEEEEEEcC--CCC-eEEEEeeC--CeEEEEe--CCCCce----eEeecc-CCCeEEEEECCCCCEEEEEcC--------
Q psy11524         83 PVYSAAWSP--DSN-KVLLTQAK--SLVIKPL--SPNNKA----TKWQAH-DGLILKVAWCSSTDLILSGGE--------  142 (323)
Q Consensus        83 ~v~~~~~sp--~~~-~l~~~~~~--~~~v~~~--~~~~~~----~~~~~~-~~~v~~~~~~~~~~~l~~~~~--------  142 (323)
                      ....+.+.+  +|+ +|+++...  +..+.+|  +..+..    ..+... -...+++.+.++|.+.++...        
T Consensus       113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~  192 (355)
T 3sre_A          113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLK  192 (355)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHH
T ss_pred             eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccc
Confidence            567777765  354 45555433  2345454  444332    222222 245789999999987776541        


Q ss_pred             ---------CCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC-C-eEEEEeCCC-Cee---eecCCCCc
Q psy11524        143 ---------DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVG-WSH---SLDKPDTG  207 (323)
Q Consensus       143 ---------d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~-~~~---~~~~~~~~  207 (323)
                               .|.+.   .++..  .+..+...-...+.++|+||++.++++.. . .|+.|++.. ..+   ..+ ...+
T Consensus       193 ~~e~~~~~~~g~vy---r~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g  266 (355)
T 3sre_A          193 SWEMHLGLAWSFVT---YYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDT  266 (355)
T ss_dssp             HHHHHTTCCCEEEE---EECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSS
T ss_pred             cchhhccCCccEEE---EEECC--eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCC
Confidence                     13333   55542  34444334456789999999999888876 3 999999752 211   122 2356


Q ss_pred             cEEEEEEcC-CCCEEEEEecCc--EEEEEcC
Q psy11524        208 SVYDLVWSN-DATQIAGACANV--IHIFDIS  235 (323)
Q Consensus       208 ~v~~~~~~~-~~~~l~~~~~d~--i~iwd~~  235 (323)
                      ....+++.+ +|++.+++..++  |..|+..
T Consensus       267 ~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          267 LVDNISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             CCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence            678899999 598777666565  5555543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.50  E-value=0.013  Score=49.04  Aligned_cols=137  Identities=15%  Similarity=0.142  Sum_probs=86.7

Q ss_pred             CCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecC----CCceeEEEEecCCCEEEEEeCCeEEEEeCC-CC---e-----
Q psy11524        133 STDLILSGGEDCKYKASFVWDTD-GRQLYSSLTH----DHPISSLAWAPGGDMFAVGSYNTLRLCDKV-GW---S-----  198 (323)
Q Consensus       133 ~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~----~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~-~~---~-----  198 (323)
                      +|..++.+- ++.||   .-++. ...-+.+...    -..+..+..+|+|++||..+...|.|..+. +.   .     
T Consensus        31 n~t~i~~a~-~n~iR---~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIR---WYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             TTTEEEEEE-TTEEE---EEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHH
T ss_pred             CCCEEEEEE-CCEEE---EEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccc
Confidence            444444433 46676   66665 3222233222    225788999999999999988888888865 21   0     


Q ss_pred             --e--ee--cC----CCCccEEEEEEcCC---CCEEEEEecCc-EEEEEcCCCc--eeeeec-------CCCCccceEEE
Q psy11524        199 --H--SL--DK----PDTGSVYDLVWSND---ATQIAGACANV-IHIFDISSSS--SSNVTA-------PLSHSHEITQL  255 (323)
Q Consensus       199 --~--~~--~~----~~~~~v~~~~~~~~---~~~l~~~~~d~-i~iwd~~~~~--~~~~~~-------~~~~~~~v~~~  255 (323)
                        .  ..  ..    ....+|..+.|+|-   +..|++-..|+ |++||+....  +. .+.       +......+.++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~  185 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL  185 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence              0  01  10    02467999999994   56899999999 9999988632  22 110       11223578899


Q ss_pred             EEccCCCCccceEEEEe--CCCCeE
Q psy11524        256 AVNQTGSLQERHVAFID--KNRDLY  278 (323)
Q Consensus       256 ~~~p~g~~~d~~l~~~~--~~~~~~  278 (323)
                      +|.+++    -+|.+..  ..|.++
T Consensus       186 ~Fg~~~----lTLYvl~~t~~GDIY  206 (452)
T 3pbp_A          186 EFSKDG----LTLYCLNTTEGGDIF  206 (452)
T ss_dssp             EECTTS----SCEEEEECTTSCEEE
T ss_pred             EEcCCC----cEEEEEecCCCCCEE
Confidence            999976    6676655  445554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.48  E-value=0.035  Score=49.35  Aligned_cols=72  Identities=11%  Similarity=0.074  Sum_probs=39.9

Q ss_pred             Cc-EEEEEcCCCceeeeecCCC--CccceE---EEEEccCCCCccceEEEEeCCCCeEEEecccccCCCCccce--eEEE
Q psy11524        227 NV-IHIFDISSSSSSNVTAPLS--HSHEIT---QLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSV--YDLV  298 (323)
Q Consensus       227 d~-i~iwd~~~~~~~~~~~~~~--~~~~v~---~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~  298 (323)
                      ++ |.-||+.+++.+-+.....  ...++.   .+.|..   ..|+.|..+|.+....+|..+.      ...+  .-+.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g---~~dg~l~A~D~~tG~~lW~~~~------~~g~~a~P~~  535 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTG---TGDGYFKAFDAKSGKELWKFQT------GSGIVSPPIT  535 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEE---CTTSEEEEEETTTCCEEEEEEC------SSCCCSCCEE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEE---CCCCcEEEEECCCCCEEEEecC------CCCcccCceE
Confidence            56 9999999998876532211  111111   122222   2246777777776777777655      2222  2366


Q ss_pred             EeeCCCeeE
Q psy11524        299 WSSDATQIA  307 (323)
Q Consensus       299 ~s~~g~~l~  307 (323)
                      +..+|+..+
T Consensus       536 y~~~G~qYv  544 (582)
T 1flg_A          536 WEQDGEQYL  544 (582)
T ss_dssp             EEETTEEEE
T ss_pred             EEECCEEEE
Confidence            778887443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.44  E-value=0.01  Score=52.65  Aligned_cols=56  Identities=9%  Similarity=-0.072  Sum_probs=35.5

Q ss_pred             eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeee
Q psy11524        188 TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVT  243 (323)
Q Consensus       188 ~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~  243 (323)
                      .+..||+.+.+..........+....+...+..++.++.|+ |+.+|.++|+.+.++
T Consensus       445 ~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~  501 (571)
T 2ad6_A          445 QIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNF  501 (571)
T ss_dssp             EEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             eEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence            78888877543332211222222222233455777888999 999999999998874

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.43  E-value=0.037  Score=45.70  Aligned_cols=174  Identities=11%  Similarity=0.050  Sum_probs=97.7

Q ss_pred             CCEEEEEEcCCCCeEEEEe-----------eCCeEEEEeCCCCc---ee--Eeec-----cCCCeEEEEECC--CCC-EE
Q psy11524         82 PPVYSAAWSPDSNKVLLTQ-----------AKSLVIKPLSPNNK---AT--KWQA-----HDGLILKVAWCS--STD-LI  137 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~-----------~~~~~v~~~~~~~~---~~--~~~~-----~~~~v~~~~~~~--~~~-~l  137 (323)
                      .....+...|+|..+++++           ...|.|+++|..+.   ..  .+.+     .......+.+.+  +++ +|
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            3455666677664444331           24578999987632   22  2222     234677787765  454 44


Q ss_pred             EEEc-C--CCceEeeeEEeC--CCCeeeEe---ecC-CCceeEEEEecCCCEEEEEe-----------------C-CeEE
Q psy11524        138 LSGG-E--DCKYKASFVWDT--DGRQLYSS---LTH-DHPISSLAWAPGGDMFAVGS-----------------Y-NTLR  190 (323)
Q Consensus       138 ~~~~-~--d~~i~~i~v~d~--~~~~~~~~---~~~-~~~v~~~~~~p~~~~l~~~~-----------------~-~~i~  190 (323)
                      +++. .  +.+|.   +|++  .++....+   .+. -...+.+++.++|.++++..                 . +.++
T Consensus       130 ~Vvnh~~~~s~ie---lf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy  206 (355)
T 3sre_A          130 LVVNHPGSSSTVE---VFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT  206 (355)
T ss_dssp             EEEECSTTCCEEE---EEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEECCCCCCeEE---EEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence            4443 3  45666   6665  34433322   221 23578999999998776654                 1 2455


Q ss_pred             EEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecC-c-EEEEEcCC-CceeeeecCCCCccceEEEEEcc-CC
Q psy11524        191 LCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN-V-IHIFDISS-SSSSNVTAPLSHSHEITQLAVNQ-TG  261 (323)
Q Consensus       191 i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~-i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~p-~g  261 (323)
                      -+|..  ........-...+.++|+||++.|+.+... + |+.|++.. ++......+ ......-.+++.+ +|
T Consensus       207 r~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G  278 (355)
T 3sre_A          207 YYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTG  278 (355)
T ss_dssp             EECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTC
T ss_pred             EEECC--eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCC
Confidence            55543  222222233457899999999988877654 4 99999863 332211002 2234566777777 46

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.36  E-value=0.031  Score=46.91  Aligned_cols=143  Identities=10%  Similarity=0.072  Sum_probs=94.9

Q ss_pred             EecCCCEEEEEeCCeEEEEeCC-CCeeeecCC----CCccEEEEEEcCCCCEEEEEecCcEEEEEcCCCce---------
Q psy11524        174 WAPGGDMFAVGSYNTLRLCDKV-GWSHSLDKP----DTGSVYDLVWSNDATQIAGACANVIHIFDISSSSS---------  239 (323)
Q Consensus       174 ~~p~~~~l~~~~~~~i~i~d~~-~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~i~iwd~~~~~~---------  239 (323)
                      ...+|..++++-.+.||.-++. ....+.+..    .-..+..+..+|+|++||..+..+|.|..+..+..         
T Consensus        28 ~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           28 SSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             EETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred             EEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence            3456777777777788888866 333332221    12357889999999999998776688887763321         


Q ss_pred             ---eeeecCCC----CccceEEEEEccCCCCccceEEEEeCCCCeEEEeccccc-----C-C--------CCccceeEEE
Q psy11524        240 ---SNVTAPLS----HSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSL-----D-K--------PDTGSVYDLV  298 (323)
Q Consensus       240 ---~~~~~~~~----~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~~-----~-~--------~~~~~v~~~~  298 (323)
                         .+.+.+..    ...+|..+.|+|-+. .+..|.+-..++.+++|++....     . +        .....|.+++
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~-~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSY-RDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBG-GGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccC-CCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence               11111111    246799999999873 34678888888889998887520     0 0        0125788999


Q ss_pred             EeeCCCeeEeee--cCCeEEE
Q psy11524        299 WSSDATQIAGAC--ANGSLLL  317 (323)
Q Consensus       299 ~s~~g~~l~s~~--~dg~i~~  317 (323)
                      |.+++=.|...+  ..|.|+-
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEE
T ss_pred             EcCCCcEEEEEecCCCCCEEE
Confidence            999887777644  7787763

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.33  E-value=0.03  Score=42.45  Aligned_cols=138  Identities=13%  Similarity=0.089  Sum_probs=78.9

Q ss_pred             CceeEEEEecCCCEEEEEeCCeEEEEeCCC-CeeeecC-------CCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCC
Q psy11524        167 HPISSLAWAPGGDMFAVGSYNTLRLCDKVG-WSHSLDK-------PDTGSVYDLVWSNDATQIAGACANV-IHIFDISSS  237 (323)
Q Consensus       167 ~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~-~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~  237 (323)
                      ..+..++|+|+|.+.++ ..+.++-.+..+ .......       ..-.....+.|.|+|.+.++  .|+ |+-++..+.
T Consensus        41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~  117 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS  117 (236)
T ss_dssp             TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred             ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence            36779999999997777 667877777543 1111111       01112478999999987666  558 877775432


Q ss_pred             ceee-----eecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----------cCCCCccceeEEEEee
Q psy11524        238 SSSN-----VTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----------LDKPDTGSVYDLVWSS  301 (323)
Q Consensus       238 ~~~~-----~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~v~~~~~s~  301 (323)
                      ..-.     +..-...-..+..+.|.|+|     .|.... ++.++.......           +-+..-..-.-+.|.|
T Consensus       118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G-----~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~  191 (236)
T 1tl2_A          118 DTDNWIARATEVGSGGWSGFKFLFFHPNG-----YLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS  191 (236)
T ss_dssp             TTCCHHHHSEEEECSSGGGEEEEEECTTS-----CEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred             CCCceeccccEeccCCCCceEEEEECCCc-----eEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence            1110     00011222467899999997     555555 666443322211           0001122345577999


Q ss_pred             CCCeeEeeecCCeE
Q psy11524        302 DATQIAGACANGSL  315 (323)
Q Consensus       302 ~g~~l~s~~~dg~i  315 (323)
                      +|.+.+..  +|.+
T Consensus       192 ~G~l~~v~--~g~~  203 (236)
T 1tl2_A          192 VGTLFGVQ--GGKF  203 (236)
T ss_dssp             TSCEEEEE--TTEE
T ss_pred             CCcEEEEe--CCeE
Confidence            98766655  7743

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.30  E-value=0.014  Score=51.84  Aligned_cols=82  Identities=13%  Similarity=0.078  Sum_probs=45.3

Q ss_pred             eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccc
Q psy11524        188 TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQER  266 (323)
Q Consensus       188 ~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~  266 (323)
                      .|..||+.+.++........+...-.....+.+++.++.|+ ++.||.++|+.+.+++... .....-+.+..+|+   .
T Consensus       467 ~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~-g~~a~P~~y~~~G~---q  542 (582)
T 1flg_A          467 SLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS-GIVSPPITWEQDGE---Q  542 (582)
T ss_dssp             EEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS-CCCSCCEEEEETTE---E
T ss_pred             eEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC-CcccCceEEEECCE---E
Confidence            78888977544332111111221111122356788899999 9999999999998743321 11112245556652   4


Q ss_pred             eEEEEeC
Q psy11524        267 HVAFIDK  273 (323)
Q Consensus       267 ~l~~~~~  273 (323)
                      +|.+.+.
T Consensus       543 Yv~~~~G  549 (582)
T 1flg_A          543 YLGVTVG  549 (582)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEcc
Confidence            5555443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.12  E-value=0.032  Score=49.73  Aligned_cols=82  Identities=9%  Similarity=-0.020  Sum_probs=43.2

Q ss_pred             eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccc
Q psy11524        188 TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQER  266 (323)
Q Consensus       188 ~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~  266 (323)
                      .+..||+.+.++........+...-.....+..++.++.|+ ++.||.++|+.+.+.++.. .....-+.+..+|+   .
T Consensus       454 ~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~-g~~~~P~~y~~~G~---q  529 (599)
T 1w6s_A          454 QIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS-GAIGYPMTYTHKGT---Q  529 (599)
T ss_dssp             EEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS-CCCSCCEEEEETTE---E
T ss_pred             eEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCC-CcEeccEEEEeCCE---E
Confidence            67777766443332211111111111222456777888999 9999999999988743322 11122244555652   3


Q ss_pred             eEEEEeC
Q psy11524        267 HVAFIDK  273 (323)
Q Consensus       267 ~l~~~~~  273 (323)
                      +|.+...
T Consensus       530 yv~~~~G  536 (599)
T 1w6s_A          530 YVAIYYG  536 (599)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEcc
Confidence            4555443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.03  E-value=0.021  Score=43.36  Aligned_cols=135  Identities=11%  Similarity=-0.021  Sum_probs=78.9

Q ss_pred             CEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeeccCCC--------eEEEEECCCCCEEEEEcCCCceEeeeEEe
Q psy11524         83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQAHDGL--------ILKVAWCSSTDLILSGGEDCKYKASFVWD  153 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~--------v~~~~~~~~~~~l~~~~~d~~i~~i~v~d  153 (323)
                      .+..++|+|+|...++  .+ +.++-.+.... ...+......        -.++.|.|+|.+.++  .||.|.   -++
T Consensus        42 ~~~~laf~P~G~LYaV--~~-G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iy---r~~  113 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LN-DKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLY---KAS  113 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ET-TEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEE---EES
T ss_pred             cceeEEECCCccEEEE--eC-CeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEE---EeC
Confidence            5669999999986655  44 57777765431 1111111122        368899999988777  568887   777


Q ss_pred             C--CCCee-----eEe-ecCCCceeEEEEecCCCEEEEEeCCeEEEEeCC-CCe------e-eecCCCCccEEEEEEcCC
Q psy11524        154 T--DGRQL-----YSS-LTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKV-GWS------H-SLDKPDTGSVYDLVWSND  217 (323)
Q Consensus       154 ~--~~~~~-----~~~-~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~-~~~------~-~~~~~~~~~v~~~~~~~~  217 (323)
                      .  ++...     ..+ ...-..+..+.|.|+|.+.++. ++.++-.... +..      . ......-...+.+.|.|+
T Consensus       114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~  192 (236)
T 1tl2_A          114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV  192 (236)
T ss_dssp             CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred             CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCC
Confidence            5  22111     111 1122467899999999988888 6565433322 110      1 111122334556778888


Q ss_pred             CCEEEEEecCc
Q psy11524        218 ATQIAGACANV  228 (323)
Q Consensus       218 ~~~l~~~~~d~  228 (323)
                      |...++.  ++
T Consensus       193 G~l~~v~--~g  201 (236)
T 1tl2_A          193 GTLFGVQ--GG  201 (236)
T ss_dssp             SCEEEEE--TT
T ss_pred             CcEEEEe--CC
Confidence            8766655  55

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.56  E-value=0.25  Score=40.60  Aligned_cols=140  Identities=13%  Similarity=0.111  Sum_probs=79.0

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEe-------eccCCCeEEEEECCC---CCEEEEE---cCCCc
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKW-------QAHDGLILKVAWCSS---TDLILSG---GEDCK  145 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~-------~~~~~~v~~~~~~~~---~~~l~~~---~~d~~  145 (323)
                      .-.....|+|.|+|..+++ ....|.|+.++.... ...+       .........|+++|+   +..|+..   ..++.
T Consensus        30 gL~~P~~ia~~pdG~llVt-er~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~  108 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVS-SRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR  108 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEE-ETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred             CCCCceEEEEcCCCcEEEE-EecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence            4567889999999986654 343578888876433 2222       123456889999996   3444432   23445


Q ss_pred             eEeeeEEeCCC---------Ceee---Eeec-CCCceeEEEEecCCCEEEEEeC--------------CeEEEEeCCCCe
Q psy11524        146 YKASFVWDTDG---------RQLY---SSLT-HDHPISSLAWAPGGDMFAVGSY--------------NTLRLCDKVGWS  198 (323)
Q Consensus       146 i~~i~v~d~~~---------~~~~---~~~~-~~~~v~~~~~~p~~~~l~~~~~--------------~~i~i~d~~~~~  198 (323)
                      |.   -|..+.         ....   .+.. ....-..++|.|||.++++.++              +.|.-.+..+..
T Consensus       109 v~---R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i  185 (347)
T 3das_A          109 IV---RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP  185 (347)
T ss_dssp             EE---EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred             EE---EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence            55   565543         1111   1111 1123457999999987776542              244444544320


Q ss_pred             ---------eeecCCCCccEEEEEEcCCCCEEEEE
Q psy11524        199 ---------HSLDKPDTGSVYDLVWSNDATQIAGA  224 (323)
Q Consensus       199 ---------~~~~~~~~~~v~~~~~~~~~~~l~~~  224 (323)
                               .....++. ....++|+|+|.+.++-
T Consensus       186 p~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d  219 (347)
T 3das_A          186 APGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             CTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEE
T ss_pred             cCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEe
Confidence                     11222332 35689999988765543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.53  E-value=0.24  Score=42.56  Aligned_cols=101  Identities=15%  Similarity=0.207  Sum_probs=57.7

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCC-CceeE---eec------cCCCeEEEEECCC---CCEEEEEcC-----
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPN-NKATK---WQA------HDGLILKVAWCSS---TDLILSGGE-----  142 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~-~~~~~---~~~------~~~~v~~~~~~~~---~~~l~~~~~-----  142 (323)
                      -.....|+|.|+|+.+++ ....+.|+.++.. +....   +..      .......|+|+|+   +..|+.+..     
T Consensus        26 l~~P~~~a~~pdG~l~V~-e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLT-ERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             CSSEEEEEECTTSCEEEE-ETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCCceEEEEcCCCcEEEE-EcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            446779999999986664 3443467777654 22222   211      2456779999995   445444432     


Q ss_pred             --------CCceEeeeEEeCCC--Cee---eE----eec-CCCceeEEEEecCCCEEEEEe
Q psy11524        143 --------DCKYKASFVWDTDG--RQL---YS----SLT-HDHPISSLAWAPGGDMFAVGS  185 (323)
Q Consensus       143 --------d~~i~~i~v~d~~~--~~~---~~----~~~-~~~~v~~~~~~p~~~~l~~~~  185 (323)
                              ...|.   .++.+.  ..+   ..    +.. .......|+|.|||.++++.+
T Consensus       105 ~~~~~~~~~~~v~---r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          105 STDKELPNQTIIR---RYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             C--CCSCEEEEEE---EEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CCccccccccEEE---EEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                    12344   555421  111   11    111 123468899999998877654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.51  E-value=0.28  Score=40.55  Aligned_cols=193  Identities=11%  Similarity=0.127  Sum_probs=100.5

Q ss_pred             CCCEEEEEEcCC---CCeEEEEeeC-------CeEEEEeCCCCc------eeE-eecc------CCCeEEEEECCCCCEE
Q psy11524         81 SPPVYSAAWSPD---SNKVLLTQAK-------SLVIKPLSPNNK------ATK-WQAH------DGLILKVAWCSSTDLI  137 (323)
Q Consensus        81 ~~~v~~~~~sp~---~~~l~~~~~~-------~~~v~~~~~~~~------~~~-~~~~------~~~v~~~~~~~~~~~l  137 (323)
                      ......|+++|+   +.+|.++...       ...|..++....      ... +...      ......++|.|||.+.
T Consensus        65 ~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Ly  144 (353)
T 2g8s_A           65 QGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLF  144 (353)
T ss_dssp             TCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEE
T ss_pred             CCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEE
Confidence            456789999996   5566555322       234555543211      111 1111      1123579999999766


Q ss_pred             EEEcCC-------------CceEeeeEEeCCCC-------------eeeEeecCCCceeEEEEec-CCCEEEEEeC-C--
Q psy11524        138 LSGGED-------------CKYKASFVWDTDGR-------------QLYSSLTHDHPISSLAWAP-GGDMFAVGSY-N--  187 (323)
Q Consensus       138 ~~~~~d-------------~~i~~i~v~d~~~~-------------~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~-~--  187 (323)
                      ++.+..             |.|.   -++.+++             ....+...-.....++|+| +|+++++-.. +  
T Consensus       145 v~~Gd~~~~~~~q~~~~~~g~I~---ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~  221 (353)
T 2g8s_A          145 IALGENNQRPTAQDLDKLQGKLV---RLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGG  221 (353)
T ss_dssp             EEECCTTCGGGGGCTTSCTTEEE---EEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSC
T ss_pred             EEECCCCCCCccCCCCCCCeEEE---EECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCC
Confidence            654432             4565   6676654             2222222234478899999 6665554332 1  


Q ss_pred             -eEEEEeCCC---Cee---------------------------eecCCCCccEEEEEEcC-------CCCEEEEEecCc-
Q psy11524        188 -TLRLCDKVG---WSH---------------------------SLDKPDTGSVYDLVWSN-------DATQIAGACANV-  228 (323)
Q Consensus       188 -~i~i~d~~~---~~~---------------------------~~~~~~~~~v~~~~~~~-------~~~~l~~~~~d~-  228 (323)
                       .|.+....+   +..                           ... .+...+..+.|..       +|+++++....+ 
T Consensus       222 dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~  300 (353)
T 2g8s_A          222 DEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKD  300 (353)
T ss_dssp             EEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTE
T ss_pred             cEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEe-CCCcCcceeEEECCccCcccCCcEEEEEccCCE
Confidence             343322110   000                           000 1123466778864       466666555566 


Q ss_pred             EEEEEcCCCceeeeecC-CCCccceEEEEEccCCCCccceEEEEeCCCCeEEEec
Q psy11524        229 IHIFDISSSSSSNVTAP-LSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMW  282 (323)
Q Consensus       229 i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~  282 (323)
                      |...++..++......+ ......+..+++.|+|    . |.+.+....-.+|.+
T Consensus       301 v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG----~-lyv~td~~~g~I~ri  350 (353)
T 2g8s_A          301 VIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG----Y-LYVLTDESSGELLKV  350 (353)
T ss_dssp             EEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS----C-EEEEECSTTEEEEEE
T ss_pred             EEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC----c-EEEEEeCCCCEEEEE
Confidence            88888776654332112 2223478899999997    3 555433333344443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.35  E-value=0.35  Score=39.97  Aligned_cols=177  Identities=11%  Similarity=0.067  Sum_probs=96.8

Q ss_pred             CCCEEEEEEcCC---CCeEEEEeeC---C----eEEEEeCCCCc------eeE----eecc-CCCeEEEEECCCCCEEEE
Q psy11524         81 SPPVYSAAWSPD---SNKVLLTQAK---S----LVIKPLSPNNK------ATK----WQAH-DGLILKVAWCSSTDLILS  139 (323)
Q Consensus        81 ~~~v~~~~~sp~---~~~l~~~~~~---~----~~v~~~~~~~~------~~~----~~~~-~~~v~~~~~~~~~~~l~~  139 (323)
                      ......|+++|+   +..|+++...   .    ..|..++....      ...    +... ......++|.|||.+.++
T Consensus        72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt  151 (354)
T 3a9g_A           72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT  151 (354)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred             CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence            457899999998   5566555432   1    35666654332      111    2211 112457999999987766


Q ss_pred             EcC-------------CCceEeeeEEeCCCC--------eeeEeecCCCceeEEEEec-CCCEEEEEeC-C---eEEEEe
Q psy11524        140 GGE-------------DCKYKASFVWDTDGR--------QLYSSLTHDHPISSLAWAP-GGDMFAVGSY-N---TLRLCD  193 (323)
Q Consensus       140 ~~~-------------d~~i~~i~v~d~~~~--------~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~-~---~i~i~d  193 (323)
                      .+.             .|.|.   .++.+++        ....+...-.....++|+| +|+++++-.. +   .|.+..
T Consensus       152 ~G~~~~~~~~~d~~~~~G~I~---ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~  228 (354)
T 3a9g_A          152 TGDAADPRLAQDLSSLAGKIL---RVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIIL  228 (354)
T ss_dssp             CCCTTCGGGGTCTTCCSSEEE---EECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEEC
T ss_pred             ECCCCCCccccCCCCCCeEEE---EEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEec
Confidence            442             14455   6666554        1122222223467899999 6765555433 2   355443


Q ss_pred             CCC---C--------------eeeecCCCCccEEEEEEc-------CCCCEEEEEecCc-EEEEEcCCC-cee--eeecC
Q psy11524        194 KVG---W--------------SHSLDKPDTGSVYDLVWS-------NDATQIAGACANV-IHIFDISSS-SSS--NVTAP  245 (323)
Q Consensus       194 ~~~---~--------------~~~~~~~~~~~v~~~~~~-------~~~~~l~~~~~d~-i~iwd~~~~-~~~--~~~~~  245 (323)
                      ..+   +              ..............++|.       .+|.++++.-..+ |...++... +..  ..+ +
T Consensus       229 ~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~-~  307 (354)
T 3a9g_A          229 KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTF-F  307 (354)
T ss_dssp             TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEE-C
T ss_pred             CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeee-c
Confidence            211   0              111110122357788884       4676666555556 888888753 332  221 2


Q ss_pred             CCCccceEEEEEccCC
Q psy11524        246 LSHSHEITQLAVNQTG  261 (323)
Q Consensus       246 ~~~~~~v~~~~~~p~g  261 (323)
                      .+....+..+++.|+|
T Consensus       308 ~~~~~rp~~v~~~pDG  323 (354)
T 3a9g_A          308 KNVFGRLRDVVIDDDG  323 (354)
T ss_dssp             TTTSCCEEEEEECTTS
T ss_pred             cCCCCCeeEEEECCCC
Confidence            3334578899999996

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.33  E-value=0.4  Score=40.49  Aligned_cols=192  Identities=10%  Similarity=0.098  Sum_probs=119.6

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc---eeEeecc----CCCeEEEEECCCCCEEEEEcC---C----Cc
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK---ATKWQAH----DGLILKVAWCSSTDLILSGGE---D----CK  145 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~---~~~~~~~----~~~v~~~~~~~~~~~l~~~~~---d----~~  145 (323)
                      ..++|.-=.|-.+. .|+..+..  .|+-|+..+.   .+.+..|    ...|..-..+++.++++..+-   +    |.
T Consensus       104 ~~e~VvfWkWis~~-~l~lVT~t--aVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~  180 (494)
T 1bpo_A          104 MTDDVTFWKWISLN-TVALVTDN--AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA  180 (494)
T ss_dssp             CSSCCCEEEEEETT-EEEEECSS--EEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEE
T ss_pred             cCCCceEEEecCCC-eEEEEcCC--eeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccce
Confidence            34555555554433 44444333  7888987643   4445444    346777788899998775442   3    45


Q ss_pred             eEeeeEEeCCCCeeeEeecCCCceeEEEEecC---CCEEEEEeC---C-eEEEEeCCCC----------eeeecCC---C
Q psy11524        146 YKASFVWDTDGRQLYSSLTHDHPISSLAWAPG---GDMFAVGSY---N-TLRLCDKVGW----------SHSLDKP---D  205 (323)
Q Consensus       146 i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~---~~~l~~~~~---~-~i~i~d~~~~----------~~~~~~~---~  205 (323)
                      +.   +|..+.+....+++|......+...-+   ...|..+..   + .+++.++...          ......+   .
T Consensus       181 mQ---LYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~  257 (494)
T 1bpo_A          181 MQ---LYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ  257 (494)
T ss_dssp             EE---EEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTST
T ss_pred             EE---EeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccc
Confidence            55   999998888888888776655554322   124555554   3 8999997422          0111111   2


Q ss_pred             CccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecc
Q psy11524        206 TGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWS  283 (323)
Q Consensus       206 ~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~  283 (323)
                      .+-..++..++.-..+..-+.-| |++||++++.++...++.  ..+|...+-+...    +-+...+..|.+....+.
T Consensus       258 ~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs--~~~iF~t~~~~~~----~Gi~~Vnr~GqVl~v~v~  330 (494)
T 1bpo_A          258 NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEAT----AGIIGVNRKGQVLSVCVE  330 (494)
T ss_dssp             TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEEETTT----TEEEEEETTCEEEEEEEC
T ss_pred             cCceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc--CCceEEecccCCC----CcEEEEccCceEEEEEEc
Confidence            34577888999888899999999 999999999998874333  3444444444443    334444566665544443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.65  E-value=0.64  Score=37.09  Aligned_cols=107  Identities=13%  Similarity=0.122  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCCC--ceEeeeEEeCCCCe---eeEeecCCC--ceeEEEEecCCCEEEEEeC------CeEEEEeCCCCee
Q psy11524        133 STDLILSGGEDC--KYKASFVWDTDGRQ---LYSSLTHDH--PISSLAWAPGGDMFAVGSY------NTLRLCDKVGWSH  199 (323)
Q Consensus       133 ~~~~l~~~~~d~--~i~~i~v~d~~~~~---~~~~~~~~~--~v~~~~~~p~~~~l~~~~~------~~i~i~d~~~~~~  199 (323)
                      +++.++.|+.++  ....+++||+....   -..+.....  .-.+++. .+++.++.|+.      +.+.+||+.+..-
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W  140 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQW  140 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence            567777777542  22234499986444   333322111  1112222 25667777653      2588999875433


Q ss_pred             eecC--CCCccEEEEEEcCCCCEEEEEecC-----c-EEEEEcCCCceee
Q psy11524        200 SLDK--PDTGSVYDLVWSNDATQIAGACAN-----V-IHIFDISSSSSSN  241 (323)
Q Consensus       200 ~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~-i~iwd~~~~~~~~  241 (323)
                      ....  .....-.+++. .+++.++.|+.+     . +.+||+.+.+...
T Consensus       141 ~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  189 (301)
T 2vpj_A          141 SMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN  189 (301)
T ss_dssp             EEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             EECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence            2211  11111112222 266667776643     4 8899988776544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.63  E-value=0.36  Score=41.43  Aligned_cols=105  Identities=13%  Similarity=0.025  Sum_probs=57.9

Q ss_pred             CccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCC------CccceEEEEEccCCCCccceEEEEeCC----
Q psy11524        206 TGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLS------HSHEITQLAVNQTGSLQERHVAFIDKN----  274 (323)
Q Consensus       206 ~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~p~g~~~d~~l~~~~~~----  274 (323)
                      -.....++|.|+|+++++-...+ |++++..+++......+..      .......++|+|+-. .++.|.+....    
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~-~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFK-NNPYIYISGTFKNPK  104 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTT-TSCEEEEEEEEECTT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcC-cCCEEEEEEeccccC
Confidence            34577999999998777665556 8888765554322111221      245677899999510 01445444321    


Q ss_pred             ---------CCeEEEecccc-------------cCCCCccceeEEEEeeCCCeeEeeec
Q psy11524        275 ---------RDLYLSMWSHS-------------LDKPDTGSVYDLVWSSDATQIAGACA  311 (323)
Q Consensus       275 ---------~~~~~~~~~~~-------------~~~~~~~~v~~~~~s~~g~~l~s~~~  311 (323)
                               ..+..+.....             +..........|+|.|||.+.++.++
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                     12222222110             11111234689999999987776554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.33  E-value=0.59  Score=38.40  Aligned_cols=103  Identities=12%  Similarity=0.005  Sum_probs=61.8

Q ss_pred             ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEe-------ecCCCceeEEEEecC----CCEEEEEe--C
Q psy11524        120 AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSS-------LTHDHPISSLAWAPG----GDMFAVGS--Y  186 (323)
Q Consensus       120 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~-------~~~~~~v~~~~~~p~----~~~l~~~~--~  186 (323)
                      ..-.....|+|.|||+++++-...|.|+   +++.++.....+       .........|+++|+    +.+.++-+  .
T Consensus        29 ~gL~~P~~ia~~pdG~llVter~~G~I~---~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           29 TGLNSPWGLAPLPGGDLLVSSRDEATIT---RVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTCEEE---EECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             cCCCCceEEEEcCCCcEEEEEecCCEEE---EEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            3345678999999999877766689999   888753332222       123456889999995    44433322  2


Q ss_pred             -CeEEEEeCCC---------Ceeee---cC-CCCccEEEEEEcCCCCEEEEEe
Q psy11524        187 -NTLRLCDKVG---------WSHSL---DK-PDTGSVYDLVWSNDATQIAGAC  225 (323)
Q Consensus       187 -~~i~i~d~~~---------~~~~~---~~-~~~~~v~~~~~~~~~~~l~~~~  225 (323)
                       +.|.-|....         .....   +. ........++|.|||.+.++.+
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence             3666665543         11111   11 1112346799999998666644

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.20  E-value=2.4  Score=41.71  Aligned_cols=207  Identities=8%  Similarity=0.034  Sum_probs=114.0

Q ss_pred             EEEEeCCCCceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEE
Q psy11524        105 VIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVG  184 (323)
Q Consensus       105 ~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  184 (323)
                      .|.+.|+..+... ...+-...+.-.+|..+.+|.-. ..++.   |+|++.+....-.....+|.-=.|- +.+.|+..
T Consensus        49 ~vvIidl~~~~~~-~rrpi~AdsAIMnP~~~iiALra-g~~lQ---iFnl~~k~klks~~~~e~VvfWkWi-s~~~l~lV  122 (1630)
T 1xi4_A           49 QVVIIDMNDPSNP-IRRPISADSAIMNPASKVIALKA-GKTLQ---IFNIEMKSKMKAHTMTDDVTFWKWI-SLNTVALV  122 (1630)
T ss_pred             eEEEEECCCCCCc-ccccccchhhccCCCcceEEEec-CCeEE---EeehHHhhhhcccccCCCceEEEec-CCCeeEEE
Confidence            5666676654211 11112223445688777666654 67888   9999644333222234456655665 45567777


Q ss_pred             eCCeEEEEeCCCC--eeeecCCC----CccEEEEEEcCCCCEEEEEe-------cCc-EEEEEcCCCceeeeecCCCCcc
Q psy11524        185 SYNTLRLCDKVGW--SHSLDKPD----TGSVYDLVWSNDATQIAGAC-------ANV-IHIFDISSSSSSNVTAPLSHSH  250 (323)
Q Consensus       185 ~~~~i~i~d~~~~--~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~d~-i~iwd~~~~~~~~~~~~~~~~~  250 (323)
                      +...|+-|++.+.  +...+.-|    ...|..-..+++.++++..+       -.| +.+|..+.+....   +.+|.+
T Consensus       123 T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~---iegha~  199 (1630)
T 1xi4_A          123 TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP---IEGHAA  199 (1630)
T ss_pred             cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh---hhHhHh
Confidence            7779999998653  33333323    34577788889999887544       246 8999877654322   344443


Q ss_pred             ceEEEEEccCCCCccceEEEEeCC----CCeEEEecccc--------------cCCC--CccceeEEEEeeCCCeeEeee
Q psy11524        251 EITQLAVNQTGSLQERHVAFIDKN----RDLYLSMWSHS--------------LDKP--DTGSVYDLVWSSDATQIAGAC  310 (323)
Q Consensus       251 ~v~~~~~~p~g~~~d~~l~~~~~~----~~~~~~~~~~~--------------~~~~--~~~~v~~~~~s~~g~~l~s~~  310 (323)
                      ....+......  .+..+.+....    +++.+.++...              .++.  ...-..++..|+.-..+...+
T Consensus       200 ~F~~~~~~~~~--~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~it  277 (1630)
T 1xi4_A          200 SFAQFKMEGNA--EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT  277 (1630)
T ss_pred             hhheeccCCCC--CCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEe
Confidence            33222221110  00112211111    23344443221              0000  122345677788778888889


Q ss_pred             cCCeEEEEEeec
Q psy11524        311 ANGSLLLGTIIQ  322 (323)
Q Consensus       311 ~dg~i~~~~l~~  322 (323)
                      .-|.|++||+.+
T Consensus       278 k~G~~~~~d~~t  289 (1630)
T 1xi4_A          278 KYGYIHLYDLET  289 (1630)
T ss_pred             cCceEEEEeccc
Confidence            999999999853

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.60  E-value=3.5  Score=39.92  Aligned_cols=175  Identities=9%  Similarity=0.046  Sum_probs=99.2

Q ss_pred             CCEEEEEc----------CCCceEeeeEEeCCCCeeeEe--ecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCC-eee
Q psy11524        134 TDLILSGG----------EDCKYKASFVWDTDGRQLYSS--LTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGW-SHS  200 (323)
Q Consensus       134 ~~~l~~~~----------~d~~i~~i~v~d~~~~~~~~~--~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~-~~~  200 (323)
                      ..+++.|.          ..|.|.   ++++.+..+..+  ...++++++++-- +| +|+++-...+++|++... .+.
T Consensus       844 ~~~lvVGTa~~~~~e~~~~~Gri~---vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~  918 (1158)
T 3ei3_A          844 NTYFIVGTAMVYPEEAEPKQGRIV---VFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR  918 (1158)
T ss_dssp             CCEEEEEEEECCTTCSSCCCEEEE---EEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE
T ss_pred             CEEEEEEeeecCCCCCCCCceEEE---EEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE
Confidence            36777775          246777   998864444433  2346778887633 45 566666569999998743 222


Q ss_pred             ecCCCCccEEEEEEcCCCCEEEEEecCc-EEE--EEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCe
Q psy11524        201 LDKPDTGSVYDLVWSNDATQIAGACANV-IHI--FDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDL  277 (323)
Q Consensus       201 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~i--wd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~  277 (323)
                      ....+-..+..+.....+++++.|..-. +.+  |+...++..... -......++++.|-.+     .++...|..+.+
T Consensus       919 ~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a-~D~~~~~vta~~~ld~-----~t~l~aD~~gNl  992 (1158)
T 3ei3_A          919 TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA-RDFNPNWMSAVEILDD-----DNFLGAENAFNL  992 (1158)
T ss_dssp             EEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE-ECCSCBCEEEEEEEET-----TEEEEEETTSEE
T ss_pred             EEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE-eecccccEEEEEEEcc-----CcEEEEcCCCcE
Confidence            1111111122223333567888888766 555  454444333221 2335567888888755     477778888888


Q ss_pred             EEEecccc------------cCCCC-ccceeEEE---EeeC---------CCeeEeeecCCeEEEEE
Q psy11524        278 YLSMWSHS------------LDKPD-TGSVYDLV---WSSD---------ATQIAGACANGSLLLGT  319 (323)
Q Consensus       278 ~~~~~~~~------------~~~~~-~~~v~~~~---~s~~---------g~~l~s~~~dg~i~~~~  319 (323)
                      .+......            ....| +..|+++.   +.+.         ...++-++.+|.|-+.-
T Consensus       993 ~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A          993 FVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp             EEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEE
T ss_pred             EEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEE
Confidence            77665442            00011 34566654   2222         23577788888887653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=94.24  E-value=1.7  Score=34.77  Aligned_cols=106  Identities=16%  Similarity=0.053  Sum_probs=55.1

Q ss_pred             CCCEEEEEcC----CCc--eEeeeEEeCCCCeeeEeecCCCc--eeEEEEecCCCEEEEEeC------CeEEEEeCCCCe
Q psy11524        133 STDLILSGGE----DCK--YKASFVWDTDGRQLYSSLTHDHP--ISSLAWAPGGDMFAVGSY------NTLRLCDKVGWS  198 (323)
Q Consensus       133 ~~~~l~~~~~----d~~--i~~i~v~d~~~~~~~~~~~~~~~--v~~~~~~p~~~~l~~~~~------~~i~i~d~~~~~  198 (323)
                      ++..++.|+.    ++.  ...+++||+....-..+.....+  -.+++. -++++++.|+.      +.+.+||+.+..
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  148 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV-IDGHIYAVGGSHGCIHHNSVERYEPERDE  148 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE-ETTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEE-ECCEEEEEcCCCCCcccccEEEECCCCCe
Confidence            5667777765    221  12344899865554444321111  112222 25667777653      358889987654


Q ss_pred             eeecCCCC---ccEEEEEEcCCCCEEEEEecC-----c-EEEEEcCCCceee
Q psy11524        199 HSLDKPDT---GSVYDLVWSNDATQIAGACAN-----V-IHIFDISSSSSSN  241 (323)
Q Consensus       199 ~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d-----~-i~iwd~~~~~~~~  241 (323)
                      -.......   .....+.+  +++.++.|+.+     . +.+||+.+.+...
T Consensus       149 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  198 (308)
T 1zgk_A          149 WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM  198 (308)
T ss_dssp             EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence            43322211   11122222  56666766643     4 8899988776443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.17  E-value=1.7  Score=34.56  Aligned_cols=107  Identities=12%  Similarity=0.052  Sum_probs=55.6

Q ss_pred             CCCEEEEEcCCC--ceEeeeEEeCCCCeeeEeecCCCc--eeEEEEecCCCEEEEEeC------CeEEEEeCCCCeeeec
Q psy11524        133 STDLILSGGEDC--KYKASFVWDTDGRQLYSSLTHDHP--ISSLAWAPGGDMFAVGSY------NTLRLCDKVGWSHSLD  202 (323)
Q Consensus       133 ~~~~l~~~~~d~--~i~~i~v~d~~~~~~~~~~~~~~~--v~~~~~~p~~~~l~~~~~------~~i~i~d~~~~~~~~~  202 (323)
                      ++..++.|+.++  ....+++||.....-..+.....+  -.+++. -+++.++.|+.      +.+.+||+.+..-...
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~  139 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV  139 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence            566777777543  223445899876554444322211  112222 25677777764      1477889876543322


Q ss_pred             CCCCc--cEEEEEEcCCCCEEEEEec-------Cc-EEEEEcCCCceee
Q psy11524        203 KPDTG--SVYDLVWSNDATQIAGACA-------NV-IHIFDISSSSSSN  241 (323)
Q Consensus       203 ~~~~~--~v~~~~~~~~~~~l~~~~~-------d~-i~iwd~~~~~~~~  241 (323)
                      .....  .-.+++. -+++.++.|+.       -. +.+||+.+.+...
T Consensus       140 ~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~  187 (302)
T 2xn4_A          140 APMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTY  187 (302)
T ss_dssp             CCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEE
T ss_pred             CCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE
Confidence            22111  1112222 25666666553       24 8899988776444

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=93.92  E-value=1.7  Score=34.56  Aligned_cols=145  Identities=6%  Similarity=-0.026  Sum_probs=73.5

Q ss_pred             CCCeEEEEeeCC----eEEEEeCCCCce-eEee---ccCCCeEEEEECCCCCEEEEEcCCCc----eEeeeEEeCCCCee
Q psy11524         92 DSNKVLLTQAKS----LVIKPLSPNNKA-TKWQ---AHDGLILKVAWCSSTDLILSGGEDCK----YKASFVWDTDGRQL  159 (323)
Q Consensus        92 ~~~~l~~~~~~~----~~v~~~~~~~~~-~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~----i~~i~v~d~~~~~~  159 (323)
                      +++.+++|+.+.    ..++.||..... ..+.   ........+.+  +++.++.|+.++.    ...+++||+....-
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence            566777776442    357788876652 1221   11111222222  5667777765332    22344999875544


Q ss_pred             eEeecCCCc--eeEEEEecCCCEEEEEeC------CeEEEEeCCCCeeeecCCCCc--cEEEEEEcCCCCEEEEEecC--
Q psy11524        160 YSSLTHDHP--ISSLAWAPGGDMFAVGSY------NTLRLCDKVGWSHSLDKPDTG--SVYDLVWSNDATQIAGACAN--  227 (323)
Q Consensus       160 ~~~~~~~~~--v~~~~~~p~~~~l~~~~~------~~i~i~d~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d--  227 (323)
                      ..+.....+  -.+++. -++++++.|+.      +.+.+||+.+..-........  .-..++. .+++.++.|+.+  
T Consensus       186 ~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~  263 (302)
T 2xn4_A          186 TYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGS  263 (302)
T ss_dssp             EEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSS
T ss_pred             EECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCC
Confidence            443322111  112222 25677777764      258899987654333222111  1111222 256677776643  


Q ss_pred             ---c-EEEEEcCCCcee
Q psy11524        228 ---V-IHIFDISSSSSS  240 (323)
Q Consensus       228 ---~-i~iwd~~~~~~~  240 (323)
                         . +.+||+.+.+..
T Consensus       264 ~~~~~v~~yd~~~~~W~  280 (302)
T 2xn4_A          264 CNLASVEYYNPTTDKWT  280 (302)
T ss_dssp             SBCCCEEEEETTTTEEE
T ss_pred             cccccEEEEcCCCCeEE
Confidence               3 788898876544

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=93.88  E-value=2.2  Score=34.85  Aligned_cols=93  Identities=11%  Similarity=0.137  Sum_probs=45.4

Q ss_pred             CCCeEEEEeeCCeEEEEeCCCC--c-eeEeeccC----CCeEEEEECCCCCEEEEEcC-C---C---ceEeeeEEeCCCC
Q psy11524         92 DSNKVLLTQAKSLVIKPLSPNN--K-ATKWQAHD----GLILKVAWCSSTDLILSGGE-D---C---KYKASFVWDTDGR  157 (323)
Q Consensus        92 ~~~~l~~~~~~~~~v~~~~~~~--~-~~~~~~~~----~~v~~~~~~~~~~~l~~~~~-d---~---~i~~i~v~d~~~~  157 (323)
                      +++.+++|+.+...++.+|...  . -..+....    .....+.+  ++++++.|+. +   +   ....+++||+...
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            5666666665545688888763  2 22221111    11222222  5677777765 2   1   1224459998655


Q ss_pred             eeeEeecCC-Cc-eeEEEEecCCCEEEEEeC
Q psy11524        158 QLYSSLTHD-HP-ISSLAWAPGGDMFAVGSY  186 (323)
Q Consensus       158 ~~~~~~~~~-~~-v~~~~~~p~~~~l~~~~~  186 (323)
                      .-..+.... .+ ....+...++++++.|+.
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~  127 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGV  127 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEEETTEEEEEECC
T ss_pred             cEEECCCCCCcccccceEEEECCEEEEEeCc
Confidence            444433222 11 111122256777777764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.84  E-value=1.1  Score=35.77  Aligned_cols=144  Identities=14%  Similarity=0.010  Sum_probs=73.4

Q ss_pred             CCCeEEEEeeCC----eEEEEeCCCCce-eEee---ccCCCeEEEEECCCCCEEEEEcCCCc--eEeeeEEeCCCCeeeE
Q psy11524         92 DSNKVLLTQAKS----LVIKPLSPNNKA-TKWQ---AHDGLILKVAWCSSTDLILSGGEDCK--YKASFVWDTDGRQLYS  161 (323)
Q Consensus        92 ~~~~l~~~~~~~----~~v~~~~~~~~~-~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~--i~~i~v~d~~~~~~~~  161 (323)
                      +++.+++|+.+.    ..++.+|..... ..+.   ........+.+  +++.++.|+.++.  ...+++||+....-..
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  189 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN  189 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence            566666665332    357888876652 1121   11111222222  5677777775532  2234499987655444


Q ss_pred             eecCCCc--eeEEEEecCCCEEEEEeC------CeEEEEeCCCCeeeecCCCC---ccEEEEEEcCCCCEEEEEecC---
Q psy11524        162 SLTHDHP--ISSLAWAPGGDMFAVGSY------NTLRLCDKVGWSHSLDKPDT---GSVYDLVWSNDATQIAGACAN---  227 (323)
Q Consensus       162 ~~~~~~~--v~~~~~~p~~~~l~~~~~------~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d---  227 (323)
                      +.....+  -.+++. -++++++.|+.      +.+.+||+.+..-.......   .....+.  -+++.++.|+.+   
T Consensus       190 ~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~  266 (301)
T 2vpj_A          190 VTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNS  266 (301)
T ss_dssp             ECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSS
T ss_pred             CCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCc
Confidence            4322221  112222 25667777664      25889998765443322211   1112222  256666776654   


Q ss_pred             --c-EEEEEcCCCcee
Q psy11524        228 --V-IHIFDISSSSSS  240 (323)
Q Consensus       228 --~-i~iwd~~~~~~~  240 (323)
                        . +.+||.++.+..
T Consensus       267 ~~~~v~~yd~~~~~W~  282 (301)
T 2vpj_A          267 LLSSIECYDPIIDSWE  282 (301)
T ss_dssp             BEEEEEEEETTTTEEE
T ss_pred             ccccEEEEcCCCCeEE
Confidence              4 778888776543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.47  E-value=6.5  Score=38.84  Aligned_cols=187  Identities=12%  Similarity=0.071  Sum_probs=107.2

Q ss_pred             EEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC--CeeeEe
Q psy11524         87 AAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG--RQLYSS  162 (323)
Q Consensus        87 ~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~--~~~~~~  162 (323)
                      .-.+|..+.+|.-+  +..+.++++..+  +.... ....|.-=.|-.+. .|+..+ +..|.   -|++.+  .+...+
T Consensus        71 AIMnP~~~iiALra--g~~lQiFnl~~k~klks~~-~~e~VvfWkWis~~-~l~lVT-~~aVy---HW~~~~~s~P~k~f  142 (1630)
T 1xi4_A           71 AIMNPASKVIALKA--GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLN-TVALVT-DNAVY---HWSMEGESQPVKMF  142 (1630)
T ss_pred             hccCCCcceEEEec--CCeEEEeehHHhhhhcccc-cCCCceEEEecCCC-eeEEEc-CCeEE---EeccCCCCccHHHH
Confidence            44577777666543  458889988765  33332 23445545665443 344333 44577   999953  444444


Q ss_pred             ecC----CCceeEEEEecCCCEEEEEeC--------CeEEEEeCCCCeeeecCCCCccEEEEEEc--CC-CCEEEEEec-
Q psy11524        163 LTH----DHPISSLAWAPGGDMFAVGSY--------NTLRLCDKVGWSHSLDKPDTGSVYDLVWS--ND-ATQIAGACA-  226 (323)
Q Consensus       163 ~~~----~~~v~~~~~~p~~~~l~~~~~--------~~i~i~d~~~~~~~~~~~~~~~v~~~~~~--~~-~~~l~~~~~-  226 (323)
                      ..|    ...|.+-..+++.++++..+-        |.+.+|.......+.+.+|.+....+...  +. ...++.+.. 
T Consensus       143 dR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~  222 (1630)
T 1xi4_A          143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRG  222 (1630)
T ss_pred             hcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEec
Confidence            333    456777788888888664431        47888988776666677776655444432  11 223333322 


Q ss_pred             --Cc-EEEEEcCCC---ceee-----eecCCC--CccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc
Q psy11524        227 --NV-IHIFDISSS---SSSN-----VTAPLS--HSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS  285 (323)
Q Consensus       227 --d~-i~iwd~~~~---~~~~-----~~~~~~--~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~  285 (323)
                        ++ ++|.++...   .+..     .+.+..  ...-..++..++.-    +.+.+...-|.+.++++.++
T Consensus       223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~----g~iy~itk~G~~~~~d~~t~  290 (1630)
T 1xi4_A          223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH----DVVFLITKYGYIHLYDLETG  290 (1630)
T ss_pred             CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecccc----CEEEEEecCceEEEEecccc
Confidence              25 899887543   1110     000111  11222345556554    78888888888999998886

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.33  E-value=4.6  Score=36.73  Aligned_cols=148  Identities=14%  Similarity=0.124  Sum_probs=80.3

Q ss_pred             CCCCeEEEEeeCC---eEEEEeCCCCc-eeEee-c--------cCCCeEEEEECCCCCEEEEEcCCC---ceEeeeEEeC
Q psy11524         91 PDSNKVLLTQAKS---LVIKPLSPNNK-ATKWQ-A--------HDGLILKVAWCSSTDLILSGGEDC---KYKASFVWDT  154 (323)
Q Consensus        91 p~~~~l~~~~~~~---~~v~~~~~~~~-~~~~~-~--------~~~~v~~~~~~~~~~~l~~~~~d~---~i~~i~v~d~  154 (323)
                      .++..+++||.+.   ..++.||.... -..+. .        ....-..+.+..+++.++.|+.++   ....+++||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            4566667666431   24677776655 22222 1        111223333332677888887653   2345669998


Q ss_pred             CCCeeeEeecCCCc--eeEEEEecCCCEEEEEeCC---eEEEEeCCCCeeeecCC------CCccEEEEEEcCC-CCEEE
Q psy11524        155 DGRQLYSSLTHDHP--ISSLAWAPGGDMFAVGSYN---TLRLCDKVGWSHSLDKP------DTGSVYDLVWSND-ATQIA  222 (323)
Q Consensus       155 ~~~~~~~~~~~~~~--v~~~~~~p~~~~l~~~~~~---~i~i~d~~~~~~~~~~~------~~~~v~~~~~~~~-~~~l~  222 (323)
                      ....-..+.....+  -.+.+.-.+++.++.|+.+   .+.+||..+..-.....      .......+.+..+ ++.++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            75544433222211  1223332478888888763   68999987654443321      1112233555655 66677


Q ss_pred             EEec-------Cc-EEEEEcCCCc
Q psy11524        223 GACA-------NV-IHIFDISSSS  238 (323)
Q Consensus       223 ~~~~-------d~-i~iwd~~~~~  238 (323)
                      .|+.       -. +.+||+.+.+
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCc
Confidence            7764       14 8899988876

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=92.89  E-value=2.9  Score=33.25  Aligned_cols=146  Identities=13%  Similarity=0.065  Sum_probs=73.8

Q ss_pred             CCCeEEEEeeC---CeEEEEeCCCCce-eEeec---cCCCeEEEEECCCCCEEEEEcCC-C--ceEeeeEEeCCCCeeeE
Q psy11524         92 DSNKVLLTQAK---SLVIKPLSPNNKA-TKWQA---HDGLILKVAWCSSTDLILSGGED-C--KYKASFVWDTDGRQLYS  161 (323)
Q Consensus        92 ~~~~l~~~~~~---~~~v~~~~~~~~~-~~~~~---~~~~v~~~~~~~~~~~l~~~~~d-~--~i~~i~v~d~~~~~~~~  161 (323)
                      +++.+++|+.+   ...++.+|..... ..+..   .......+.+  +++.++.|+.+ +  ....+++||+....-..
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            56666666543   1367888877652 22211   1112222222  56777777754 1  12234499987655444


Q ss_pred             eecCCCc--eeEEEEecCCCEEEEEeC----------CeEEEEeCCCCeeeecCCCCc--cEEEEEEcCCCCEEEEEecC
Q psy11524        162 SLTHDHP--ISSLAWAPGGDMFAVGSY----------NTLRLCDKVGWSHSLDKPDTG--SVYDLVWSNDATQIAGACAN  227 (323)
Q Consensus       162 ~~~~~~~--v~~~~~~p~~~~l~~~~~----------~~i~i~d~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d  227 (323)
                      +.....+  -.+++. -++++++.|+.          +.+.+||+.+..-........  .-.+++.. +++.++.|+.+
T Consensus       133 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~  210 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQN  210 (306)
T ss_dssp             ECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEE
T ss_pred             CCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCC
Confidence            4322111  112222 25666666652          348899987654433322211  11122222 56666666542


Q ss_pred             -----c-EEEEEcCCCceee
Q psy11524        228 -----V-IHIFDISSSSSSN  241 (323)
Q Consensus       228 -----~-i~iwd~~~~~~~~  241 (323)
                           . +.+||+.+.+-..
T Consensus       211 ~~~~~~~~~~yd~~~~~W~~  230 (306)
T 3ii7_A          211 GLGGLDNVEYYDIKLNEWKM  230 (306)
T ss_dssp             TTEEBCCEEEEETTTTEEEE
T ss_pred             CCCCCceEEEeeCCCCcEEE
Confidence                 3 8899988875443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=92.74  E-value=5.9  Score=36.35  Aligned_cols=214  Identities=12%  Similarity=0.117  Sum_probs=121.1

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEe--eccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCe
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKW--QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQ  158 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~  158 (323)
                      ...|.++.-..+|. |-++.. .| +..+|........  ......|.++.. .+|. |..++.+ .+.   .+|.....
T Consensus        62 ~~~i~~i~~d~~g~-lWigT~-~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~---~~~~~~~~  132 (758)
T 3ott_A           62 NTRIYCGVIIDNTY-LYMGTD-NG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGDT-LWLGALN-GLY---TYQLQSRK  132 (758)
T ss_dssp             SSCEEEEEEETTTE-EEEEET-TE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETTE-EEEEETT-EEE---EEETTTCC
T ss_pred             CceEEEEEEcCCCc-EEEEeC-CC-eEEEeCCCCEEECcccCCCceEEEEEe-cCCc-EEEEcCC-cce---eEeCCCCe
Confidence            45788988877764 444544 34 5677765442111  112235666654 3554 4445544 566   88886555


Q ss_pred             eeEeec-----CCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCeeeecC-C-----CCccEEEEEEcCCCCEEEEEecC
Q psy11524        159 LYSSLT-----HDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLDK-P-----DTGSVYDLVWSNDATQIAGACAN  227 (323)
Q Consensus       159 ~~~~~~-----~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~-~-----~~~~v~~~~~~~~~~~l~~~~~d  227 (323)
                      ...+..     ....|.++...++|.+.+ ++.+-+..+|..+....... .     ....|.++...+++..|..++.+
T Consensus       133 ~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~  211 (758)
T 3ott_A          133 LTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEG  211 (758)
T ss_dssp             EEEECHHHHCCSCSCEEEEEECTTCCEEE-EETTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEE
T ss_pred             EEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECC
Confidence            544411     234578888877777655 44556778887655433221 1     12248888888877665566643


Q ss_pred             cEEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----------cCCCCccceeE
Q psy11524        228 VIHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----------LDKPDTGSVYD  296 (323)
Q Consensus       228 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~v~~  296 (323)
                      |+..+|..+++....  .......|.++...++|     .|.++.. +.+.+++....           ........|.+
T Consensus       212 Gl~~~~~~~~~~~~~--~~l~~~~i~~i~~d~~g-----~lWigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~  283 (758)
T 3ott_A          212 YLFQYFPSTGQIKQT--EAFHNNSIKSLALDGNG-----DLLAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWN  283 (758)
T ss_dssp             EEEEEETTTTEEEEE--EEEEEEEEEEEEECTTC-----CEEEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEE
T ss_pred             CCeEEcCCCCeEEec--cCCCCCeEEEEEEcCCC-----CEEEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEE
Confidence            488999877654322  11123457777776664     5666653 44555554332           01122356888


Q ss_pred             EEEeeCCCeeEeeecCC
Q psy11524        297 LVWSSDATQIAGACANG  313 (323)
Q Consensus       297 ~~~s~~g~~l~s~~~dg  313 (323)
                      +....+|.+-+ |+..|
T Consensus       284 i~~D~~g~lWi-GT~~G  299 (758)
T 3ott_A          284 IFADQEHNIWL-GTDYG  299 (758)
T ss_dssp             EEECTTCCEEE-EESSS
T ss_pred             EEEcCCCCEEE-EeCCc
Confidence            88877776443 33445

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.45  E-value=0.85  Score=39.85  Aligned_cols=70  Identities=4%  Similarity=-0.024  Sum_probs=50.7

Q ss_pred             CceeEEEEecCCCEEEEEeC-C-eEEEEeCCCC------ee-------eecCCCCccEEEEEEcCCCCEEEEEecCc-EE
Q psy11524        167 HPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGW------SH-------SLDKPDTGSVYDLVWSNDATQIAGACANV-IH  230 (323)
Q Consensus       167 ~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~------~~-------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~  230 (323)
                      .....+.++|||+++++++. . ++.++|.+..      .+       .......-.....+|.++|....+..-|. |.
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence            44567889999999999998 5 9999997631      11       11112344678899999995555566788 99


Q ss_pred             EEEcCC
Q psy11524        231 IFDISS  236 (323)
Q Consensus       231 iwd~~~  236 (323)
                      -|++..
T Consensus       403 kWni~~  408 (638)
T 3sbq_A          403 KWNMEE  408 (638)
T ss_dssp             EEEHHH
T ss_pred             EEeccH
Confidence            999764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=91.87  E-value=4  Score=32.44  Aligned_cols=143  Identities=13%  Similarity=0.134  Sum_probs=69.9

Q ss_pred             eEEEEeeC-CeEEEEeCCCCce-eEe---eccCCCeEEEEECCCCCEEEEEcCC-CceEeeeEEeCCCCeeeEeecCCCc
Q psy11524         95 KVLLTQAK-SLVIKPLSPNNKA-TKW---QAHDGLILKVAWCSSTDLILSGGED-CKYKASFVWDTDGRQLYSSLTHDHP  168 (323)
Q Consensus        95 ~l~~~~~~-~~~v~~~~~~~~~-~~~---~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~i~v~d~~~~~~~~~~~~~~~  168 (323)
                      .+++|+.. ...++.||..... ..+   .........+.+  ++..++.|+.+ .....+++||+....-..+.....+
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~   91 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP   91 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence            44455432 2357777766552 111   111112222222  56677777755 2223444999876554444322211


Q ss_pred             -e-eEEEEecCCCEEEEEeC-------CeEEEEeCCCCeeeecCCCCc--cEEEEEEcCCCCEEEEEec---------Cc
Q psy11524        169 -I-SSLAWAPGGDMFAVGSY-------NTLRLCDKVGWSHSLDKPDTG--SVYDLVWSNDATQIAGACA---------NV  228 (323)
Q Consensus       169 -v-~~~~~~p~~~~l~~~~~-------~~i~i~d~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~---------d~  228 (323)
                       . .+++ .-++++++.|+.       +.+.+||..+..-........  .-.+++. -+++.++.|+.         -.
T Consensus        92 r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~  169 (306)
T 3ii7_A           92 RDSLAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLN  169 (306)
T ss_dssp             CBSCEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECC
T ss_pred             ccceeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccc
Confidence             1 1222 225667676653       258899987654332221111  1112222 25666666653         34


Q ss_pred             -EEEEEcCCCceee
Q psy11524        229 -IHIFDISSSSSSN  241 (323)
Q Consensus       229 -i~iwd~~~~~~~~  241 (323)
                       +.+||..+.+...
T Consensus       170 ~~~~yd~~~~~W~~  183 (306)
T 3ii7_A          170 SCEVYDPATETWTE  183 (306)
T ss_dssp             CEEEEETTTTEEEE
T ss_pred             eEEEeCCCCCeEEE
Confidence             8899998876444

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=91.80  E-value=4.2  Score=32.54  Aligned_cols=136  Identities=10%  Similarity=0.029  Sum_probs=69.2

Q ss_pred             EEEEeCCCCceeEeec---cCCCeEEEEECCCCCEEEEEcC-------CCce-EeeeEEeCCCCeeeEeecCCCce--eE
Q psy11524        105 VIKPLSPNNKATKWQA---HDGLILKVAWCSSTDLILSGGE-------DCKY-KASFVWDTDGRQLYSSLTHDHPI--SS  171 (323)
Q Consensus       105 ~v~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~-------d~~i-~~i~v~d~~~~~~~~~~~~~~~v--~~  171 (323)
                      .+..||.....-....   ............+++.++.|+.       ...+ ..+++||.....-..+.....+-  .+
T Consensus        14 ~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~   93 (315)
T 4asc_A           14 GAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFG   93 (315)
T ss_dssp             EEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCE
T ss_pred             ceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhcee
Confidence            6778887766322211   1122233333457788888873       1111 23558998755544443222211  12


Q ss_pred             EEEecCCCEEEEEe------C---CeEEEEeCCCCeeeecCCCCc-cEEEEEEcCCCCEEEEEec------Cc-EEEEEc
Q psy11524        172 LAWAPGGDMFAVGS------Y---NTLRLCDKVGWSHSLDKPDTG-SVYDLVWSNDATQIAGACA------NV-IHIFDI  234 (323)
Q Consensus       172 ~~~~p~~~~l~~~~------~---~~i~i~d~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~------d~-i~iwd~  234 (323)
                      ++.. +++.++.|+      .   +.+.+||+.+..-........ .....+...+++.++.|+.      -. +.+||.
T Consensus        94 ~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~  172 (315)
T 4asc_A           94 LGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDP  172 (315)
T ss_dssp             EEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEET
T ss_pred             EEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeC
Confidence            2222 566667666      1   258899987654333222111 1111122235666677765      13 889998


Q ss_pred             CCCceee
Q psy11524        235 SSSSSSN  241 (323)
Q Consensus       235 ~~~~~~~  241 (323)
                      .+.+-..
T Consensus       173 ~~~~W~~  179 (315)
T 4asc_A          173 KKFEWKE  179 (315)
T ss_dssp             TTTEEEE
T ss_pred             CCCeEEE
Confidence            8775443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=91.65  E-value=10  Score=36.77  Aligned_cols=266  Identities=14%  Similarity=0.102  Sum_probs=126.7

Q ss_pred             cceeEeeEeccC--Ccceeeeeecccc-ccccceeee----------cCCCCCEEEEEEcC--CCCeEEEEeeCCeEEE-
Q psy11524         44 DGTVINYPISPY--ISVLHSYAASHSW-PQALSLCRT----------LNVSPPVYSAAWSP--DSNKVLLTQAKSLVIK-  107 (323)
Q Consensus        44 ~~~v~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~----------~~~~~~v~~~~~sp--~~~~l~~~~~~~~~v~-  107 (323)
                      ...|.++.+.|.  +..-..+++-|.| |.+.+++..          +.......++.+..  ...+|..|-.+ |.+. 
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~d-G~l~~  631 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGD-GALFY  631 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETT-SEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCC-CeEEE
Confidence            457888888753  4444567778888 666665431          21223344444332  23456655555 4543 


Q ss_pred             -EeCCCCc----eeEeeccCCCeEEEEECCCCC-EEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeE-EEEecC--C
Q psy11524        108 -PLSPNNK----ATKWQAHDGLILKVAWCSSTD-LILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISS-LAWAPG--G  178 (323)
Q Consensus       108 -~~~~~~~----~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~-~~~~p~--~  178 (323)
                       .+|....    .++..-...++.-..+...+. .+++++ +....   ++.-+++....-. .-..+.. ..|+..  .
T Consensus       632 ~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s-~rp~l---iy~~~~~l~~s~l-~~~~v~~~~~F~se~~~  706 (1158)
T 3ei3_A          632 FGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS-DRPTV---IYSSNHKLVFSNV-NLKEVNYMCPLNSDGYP  706 (1158)
T ss_dssp             EEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEES-SSCEE---EEESSSSEEEEEB-SSSCCCEEEEECCSSST
T ss_pred             EEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEEC-CCCEE---EEEcCCceEEecc-ChHHhceEeccCcccCC
Confidence             3343222    111111233444333433333 333333 33333   4443433222111 1122322 345432  2


Q ss_pred             CEEEEEeCCeEEEEeCCC--CeeeecCCCCccEEEEEEcCCCCEEEEEec------------------------------
Q psy11524        179 DMFAVGSYNTLRLCDKVG--WSHSLDKPDTGSVYDLVWSNDATQIAGACA------------------------------  226 (323)
Q Consensus       179 ~~l~~~~~~~i~i~d~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------------------  226 (323)
                      .-++..+.+.++|..+..  .......+....++.++++|+.+.++.+..                              
T Consensus       707 ~g~v~~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  786 (1158)
T 3ei3_A          707 DSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSS  786 (1158)
T ss_dssp             TEEEEECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCC
T ss_pred             CcEEEEcCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccc
Confidence            345555555677766532  111122224567888888887665443321                              


Q ss_pred             -------------------Cc-EEEEEcCCCceeeeecCCCCccceEEE---EEccCCCCccceEEEEe----------C
Q psy11524        227 -------------------NV-IHIFDISSSSSSNVTAPLSHSHEITQL---AVNQTGSLQERHVAFID----------K  273 (323)
Q Consensus       227 -------------------d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~---~~~p~g~~~d~~l~~~~----------~  273 (323)
                                         -. |++.|..+.+.+..+.+.... .+.++   .|..+.   ..+++++.          .
T Consensus       787 ~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE-~~~sv~~v~~~~~~---~~~lvVGTa~~~~~e~~~~  862 (1158)
T 3ei3_A          787 KLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNE-YALSLVSCKLGKDP---NTYFIVGTAMVYPEEAEPK  862 (1158)
T ss_dssp             CCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTE-EEEEEEEECCTTCC---CCEEEEEEEECCTTCSSCC
T ss_pred             ccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCc-ceEEEEEEEEccCC---CEEEEEEeeecCCCCCCCC
Confidence                               13 677887777766654344433 33333   333222   24565553          2


Q ss_pred             CCCeEEEecccc-cCC----CCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        274 NRDLYLSMWSHS-LDK----PDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       274 ~~~~~~~~~~~~-~~~----~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      .|.+.++++... +..    .-.++|++++-- +|+.|++.  ..+|++|++.+
T Consensus       863 ~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~  913 (1158)
T 3ei3_A          863 QGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTT  913 (1158)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECT
T ss_pred             ceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCC
Confidence            344566655321 000    014677777632 45544443  47899999864

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=91.65  E-value=4.3  Score=32.37  Aligned_cols=106  Identities=13%  Similarity=0.041  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCC-CceEeeeEEeCCCCeeeEeecCCCc--eeEEEEecCCCEEEEEeC----------CeEEEEeCCCCee
Q psy11524        133 STDLILSGGED-CKYKASFVWDTDGRQLYSSLTHDHP--ISSLAWAPGGDMFAVGSY----------NTLRLCDKVGWSH  199 (323)
Q Consensus       133 ~~~~l~~~~~d-~~i~~i~v~d~~~~~~~~~~~~~~~--v~~~~~~p~~~~l~~~~~----------~~i~i~d~~~~~~  199 (323)
                      ++..++.|+.+ ..+..+++||.....-..+.....+  -.+++. -++.+++.|+.          +.+.+||+.+..-
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W  102 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW  102 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence            45666666642 2233444899876554444322111  112222 25666666653          2588899876544


Q ss_pred             eecCCCC---ccEEEEEEcCCCCEEEEEecC-----c-EEEEEcCCCceee
Q psy11524        200 SLDKPDT---GSVYDLVWSNDATQIAGACAN-----V-IHIFDISSSSSSN  241 (323)
Q Consensus       200 ~~~~~~~---~~v~~~~~~~~~~~l~~~~~d-----~-i~iwd~~~~~~~~  241 (323)
                      .......   .....+.+  +++.++.|+.+     . +.+||..+.+...
T Consensus       103 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  151 (308)
T 1zgk_A          103 SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHL  151 (308)
T ss_dssp             EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEE
T ss_pred             eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeE
Confidence            3322211   11222222  56666666532     3 8899988776443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=91.36  E-value=6.4  Score=33.77  Aligned_cols=104  Identities=15%  Similarity=0.205  Sum_probs=56.9

Q ss_pred             CCEEEEEEcCCCC-eEEEEeeCCeEEEEeCCCCc-----eeEee---------ccCCCeEEEEECCC----CCEEEEEcC
Q psy11524         82 PPVYSAAWSPDSN-KVLLTQAKSLVIKPLSPNNK-----ATKWQ---------AHDGLILKVAWCSS----TDLILSGGE  142 (323)
Q Consensus        82 ~~v~~~~~sp~~~-~l~~~~~~~~~v~~~~~~~~-----~~~~~---------~~~~~v~~~~~~~~----~~~l~~~~~  142 (323)
                      .....|+|.|+|. +|+++. ..|.|++++..+.     +..+.         ........|+|+|+    +.+.++-+.
T Consensus        14 ~~P~~~a~~pdG~~rl~V~e-r~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILE-KEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEE-TTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEEe-CCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            4567899999996 455454 4478999875432     11111         11456789999996    443333222


Q ss_pred             --CC-------ceEeeeEEeCCC-----------CeeeEee--cCCCceeEEEEecCCCEEEEEeC
Q psy11524        143 --DC-------KYKASFVWDTDG-----------RQLYSSL--THDHPISSLAWAPGGDMFAVGSY  186 (323)
Q Consensus       143 --d~-------~i~~i~v~d~~~-----------~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~  186 (323)
                        ++       ....|.-|.++.           +.+..+.  .....-..|+|.|||.++++.++
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence              11       011111455421           1122222  11234578999999988776654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=90.35  E-value=1.4  Score=36.03  Aligned_cols=106  Identities=8%  Similarity=0.078  Sum_probs=58.8

Q ss_pred             CEEEEEcCCCceEeeeEEeC-CCCeeeEeecC-CCceeEEEE--ec-CCCEEEEE-eC-CeEEEEeCCCCeeeecCC---
Q psy11524        135 DLILSGGEDCKYKASFVWDT-DGRQLYSSLTH-DHPISSLAW--AP-GGDMFAVG-SY-NTLRLCDKVGWSHSLDKP---  204 (323)
Q Consensus       135 ~~l~~~~~d~~i~~i~v~d~-~~~~~~~~~~~-~~~v~~~~~--~p-~~~~l~~~-~~-~~i~i~d~~~~~~~~~~~---  204 (323)
                      ..++.++.||.|.   -.|. +++.+..+... ..++....-  .+ ++..++.. .. +.++.+|..+........   
T Consensus        11 ~~V~v~t~dG~l~---Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~   87 (339)
T 2be1_A           11 DILIAADVEGGLH---AVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ   87 (339)
T ss_dssp             EEEEEEETTSCEE---EEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred             CEEEEEeCCCeEE---EEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence            4677788888888   8886 46666666543 112221110  01 22333332 33 488888876432221110   


Q ss_pred             --CCccEEE---EEE-c----CCCCEEEEEecCc-EEEEEcCCCceeeee
Q psy11524        205 --DTGSVYD---LVW-S----NDATQIAGACANV-IHIFDISSSSSSNVT  243 (323)
Q Consensus       205 --~~~~v~~---~~~-~----~~~~~l~~~~~d~-i~iwd~~~~~~~~~~  243 (323)
                        ...++..   ... .    ..+..+++++.++ +.-.|+++|+.+.++
T Consensus        88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~  137 (339)
T 2be1_A           88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAF  137 (339)
T ss_dssp             HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred             ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence              1122221   001 0    0345788999999 999999999999884

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=88.97  E-value=4.1  Score=37.07  Aligned_cols=147  Identities=7%  Similarity=-0.023  Sum_probs=74.8

Q ss_pred             CCCeEEEEeeCC-----eEEEEeCCCCceeE----eeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEe
Q psy11524         92 DSNKVLLTQAKS-----LVIKPLSPNNKATK----WQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSS  162 (323)
Q Consensus        92 ~~~~l~~~~~~~-----~~v~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~  162 (323)
                      +++.+++||.+.     ..++.||.....-.    +...... .+++...+++.++.|+.++.- .+++||+....-..+
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~-~v~~yd~~t~~W~~~  528 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGP-AMLLYNVTEEIFKDV  528 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSC-SEEEEETTTTEEEEC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCC-CEEEEECCCCceEEc
Confidence            677777776432     24677777665211    1111111 223333478888888876532 334999875544443


Q ss_pred             ec------CCCceeEEEEecC-CCEEEEEeC--------CeEEEEeCCCCe------eeecCC--CCcc-EEEEEEcCCC
Q psy11524        163 LT------HDHPISSLAWAPG-GDMFAVGSY--------NTLRLCDKVGWS------HSLDKP--DTGS-VYDLVWSNDA  218 (323)
Q Consensus       163 ~~------~~~~v~~~~~~p~-~~~l~~~~~--------~~i~i~d~~~~~------~~~~~~--~~~~-v~~~~~~~~~  218 (323)
                      ..      .......+.+..+ ++.++.|+.        +.+..||+.+..      ......  .... -.+++...++
T Consensus       529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~  608 (695)
T 2zwa_A          529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPR  608 (695)
T ss_dssp             CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETT
T ss_pred             cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCC
Confidence            32      1112233555655 667777754        258899976543      111111  0111 1122233336


Q ss_pred             CEEEEEec--------Cc-EEEEEcCCCcee
Q psy11524        219 TQIAGACA--------NV-IHIFDISSSSSS  240 (323)
Q Consensus       219 ~~l~~~~~--------d~-i~iwd~~~~~~~  240 (323)
                      +.++.|+.        .. +.+||+.+.+..
T Consensus       609 ~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          609 KLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             EEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             EEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            66666653        23 777887766543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.68  E-value=3.2  Score=36.36  Aligned_cols=115  Identities=12%  Similarity=-0.017  Sum_probs=72.2

Q ss_pred             CCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--------------eeEeeccCCCeEEEEECCCCCEEEEEcCCCceE
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--------------ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYK  147 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  147 (323)
                      .....+..+|||+++++++.-...+.+++..+.              +.....-.-.....+|.++|....+..-|..|.
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence            455678999999999998765556666665421              111122344667899999996666667899999


Q ss_pred             eeeEEeCC-------C----CeeeEeecCCCceeEEEE------ecCCCEEEEEeC---C-----------eEEEEeCCC
Q psy11524        148 ASFVWDTD-------G----RQLYSSLTHDHPISSLAW------APGGDMFAVGSY---N-----------TLRLCDKVG  196 (323)
Q Consensus       148 ~i~v~d~~-------~----~~~~~~~~~~~~v~~~~~------~p~~~~l~~~~~---~-----------~i~i~d~~~  196 (323)
                         .|+++       +    ..+..+.-|-. +-.+.-      .|||++|++...   |           .-.+.|+.+
T Consensus       403 ---kWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG  478 (638)
T 3sbq_A          403 ---KWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG  478 (638)
T ss_dssp             ---EEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS
T ss_pred             ---EEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC
Confidence               99983       2    22333433322 222222      468899888764   2           246777776


Q ss_pred             Ceee
Q psy11524        197 WSHS  200 (323)
Q Consensus       197 ~~~~  200 (323)
                      .+..
T Consensus       479 dkM~  482 (638)
T 3sbq_A          479 DEMK  482 (638)
T ss_dssp             SSCE
T ss_pred             CceE
Confidence            5433

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=88.13  E-value=11  Score=31.98  Aligned_cols=223  Identities=12%  Similarity=0.094  Sum_probs=128.6

Q ss_pred             EEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC--CCeeeE
Q psy11524         86 SAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD--GRQLYS  161 (323)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~--~~~~~~  161 (323)
                      +.-.+|..+.+|.=.  +..+.+++++.+  +.... ....|.-=.|-.+ +.|+..+ +..|+   -|+++  ..+.+.
T Consensus        70 sAIMnP~~~iiALra--g~~lQiFnle~K~klks~~-~~e~VvfWkWis~-~~l~lVT-~taVy---HWsi~~~s~P~kv  141 (494)
T 1bpo_A           70 SAIMNPASKVIALKA--GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISL-NTVALVT-DNAVY---HWSMEGESQPVKM  141 (494)
T ss_dssp             EEEECSSSSCEEEEE--TTEEEEEETTTTEEEEEEE-CSSCCCEEEEEET-TEEEEEC-SSEEE---EEESSSSCCCEEE
T ss_pred             eeeeCCCCcEEEEec--CCeEEEEchHHhhhhccee-cCCCceEEEecCC-CeEEEEc-CCeeE---EecccCCCCchhh
Confidence            344678777777654  348888888776  33333 2344544456543 3444444 44577   99995  455556


Q ss_pred             eecC----CCceeEEEEecCCCEEEEEe----C----CeEEEEeCCCCeeeecCCCCccEEEEEEcCCC---CEEEEEec
Q psy11524        162 SLTH----DHPISSLAWAPGGDMFAVGS----Y----NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDA---TQIAGACA  226 (323)
Q Consensus       162 ~~~~----~~~v~~~~~~p~~~~l~~~~----~----~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~  226 (323)
                      +..|    ...|..-..+++.++++..+    .    |.+.+|..+....+.+.+|.+....+...-+.   ..++.+..
T Consensus       142 FdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r  221 (494)
T 1bpo_A          142 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR  221 (494)
T ss_dssp             EECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEEC
T ss_pred             eecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEe
Confidence            6554    34677778889999866433    1    36889999888788888887766555443221   23444433


Q ss_pred             ---Cc-EEEEEcCCC---ce-----eeeecCC--CCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCC
Q psy11524        227 ---NV-IHIFDISSS---SS-----SNVTAPL--SHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDK  288 (323)
Q Consensus       227 ---d~-i~iwd~~~~---~~-----~~~~~~~--~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~  288 (323)
                         .+ ++|.++...   .+     ...+.+.  ....-.-++..++.-    +.+.+...-|.+.++++.++    ..+
T Consensus       222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~ky----gviyviTK~G~i~lyDleTgt~i~~nr  297 (494)
T 1bpo_A          222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH----DVVFLITKYGYIHLYDLETGTCIYMNR  297 (494)
T ss_dssp             STTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTT----TEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             cCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccC----CEEEEEecCceEEEEecccceeeeeec
Confidence               25 999988543   11     1110011  112233456666665    78888888888888888874    111


Q ss_pred             CCccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        289 PDTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       289 ~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      ...+.|-.-+-+....-++....+|.|.--.+
T Consensus       298 Is~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v  329 (494)
T 1bpo_A          298 ISGETIFVTAPHEATAGIIGVNRKGQVLSVCV  329 (494)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTCEEEEEEE
T ss_pred             ccCCceEEecccCCCCcEEEEccCceEEEEEE
Confidence            22334433333333344555556666554443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=83.85  E-value=20  Score=30.73  Aligned_cols=101  Identities=9%  Similarity=-0.015  Sum_probs=57.6

Q ss_pred             CCeEEEEECCCCC-EEEEEcCCCceEeeeEEeCCCCe----eeEee---------cCCCceeEEEEecC----CCEEEEE
Q psy11524        123 GLILKVAWCSSTD-LILSGGEDCKYKASFVWDTDGRQ----LYSSL---------THDHPISSLAWAPG----GDMFAVG  184 (323)
Q Consensus       123 ~~v~~~~~~~~~~-~l~~~~~d~~i~~i~v~d~~~~~----~~~~~---------~~~~~v~~~~~~p~----~~~l~~~  184 (323)
                      .....|+|.|||. .|+++...|.|+   +++.++..    +..+.         ........|+|+|+    +.+.++-
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~---~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~y   90 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVK---ILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSY   90 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEE---EECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEE---EEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEE
Confidence            4567899999996 455667789999   98765331    22221         11356789999996    4443332


Q ss_pred             eC-------------CeEEEEeCCC----------Ceee-e-c-CCCCccEEEEEEcCCCCEEEEEec
Q psy11524        185 SY-------------NTLRLCDKVG----------WSHS-L-D-KPDTGSVYDLVWSNDATQIAGACA  226 (323)
Q Consensus       185 ~~-------------~~i~i~d~~~----------~~~~-~-~-~~~~~~v~~~~~~~~~~~l~~~~~  226 (323)
                      +.             +.|.-|.+..          ..+. . . ......-..++|.|||.+.++.+.
T Consensus        91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            21             1333344421          1111 1 1 111224678999999986666543

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=83.21  E-value=18  Score=29.88  Aligned_cols=184  Identities=9%  Similarity=-0.014  Sum_probs=89.6

Q ss_pred             CCCEEEEEEcC-CCCeEEEEeeCC---eEEEEeCCCCc-eeEee------c--------cCCCeEEEEECC-C-CCEEEE
Q psy11524         81 SPPVYSAAWSP-DSNKVLLTQAKS---LVIKPLSPNNK-ATKWQ------A--------HDGLILKVAWCS-S-TDLILS  139 (323)
Q Consensus        81 ~~~v~~~~~sp-~~~~l~~~~~~~---~~v~~~~~~~~-~~~~~------~--------~~~~v~~~~~~~-~-~~~l~~  139 (323)
                      ...|.+|++.| +...|.+++...   ..|+..+..+. -..+.      .        ....|.++++.| + ...+.+
T Consensus        54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~  133 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA  133 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred             CCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence            46799999998 333444454442   03444433332 11111      1        112577889987 2 455655


Q ss_pred             EcCCCceEeeeEEeCCCCeeeEeec-------------------CCCceeEEEEecC-CCEEEEEe-CCeEEEEeCCCCe
Q psy11524        140 GGEDCKYKASFVWDTDGRQLYSSLT-------------------HDHPISSLAWAPG-GDMFAVGS-YNTLRLCDKVGWS  198 (323)
Q Consensus       140 ~~~d~~i~~i~v~d~~~~~~~~~~~-------------------~~~~v~~~~~~p~-~~~l~~~~-~~~i~i~d~~~~~  198 (323)
                      +...+.|.   ..+-.++.-..+..                   ....+.+|.++|. ...+..+. .+.|...+-.+..
T Consensus       134 g~~~ggl~---~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~t  210 (394)
T 3b7f_A          134 GTSPQGLF---RSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTD  210 (394)
T ss_dssp             EEETTEEE---EESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSS
T ss_pred             EecCCcEE---EEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCC
Confidence            55555554   44333333222211                   1235788999883 34444444 3455554433332


Q ss_pred             eeecCC--C-----------CccEEEEEEcCC-CCEEEEEecCcEEEEEcCCCceeeeecC-CCC--ccceEEEEEccCC
Q psy11524        199 HSLDKP--D-----------TGSVYDLVWSND-ATQIAGACANVIHIFDISSSSSSNVTAP-LSH--SHEITQLAVNQTG  261 (323)
Q Consensus       199 ~~~~~~--~-----------~~~v~~~~~~~~-~~~l~~~~~d~i~iwd~~~~~~~~~~~~-~~~--~~~v~~~~~~p~g  261 (323)
                      -.....  .           ...+.++.++|. ...|..+...+|...+ ..++.-..+.. ...  ...+..++++|..
T Consensus       211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~  289 (394)
T 3b7f_A          211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRD  289 (394)
T ss_dssp             CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSC
T ss_pred             ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeC-CCCCcceECCCCCCCCCccceEEEEECCCC
Confidence            221110  0           134889999985 4566666655565554 22332222100 111  0235678887743


Q ss_pred             CCccceEEEE
Q psy11524        262 SLQERHVAFI  271 (323)
Q Consensus       262 ~~~d~~l~~~  271 (323)
                      .   +.|.+.
T Consensus       290 ~---~~l~~~  296 (394)
T 3b7f_A          290 P---RTVWVF  296 (394)
T ss_dssp             T---TCEEEE
T ss_pred             C---CEEEEE
Confidence            2   455554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=81.51  E-value=18  Score=28.69  Aligned_cols=100  Identities=9%  Similarity=0.008  Sum_probs=51.3

Q ss_pred             EEEEEcCCCceEeeeEEeCCCCeeeEeec--CCCceeEEEEecCCCEEEEEeC--------C----eEEEEeCCCCeeee
Q psy11524        136 LILSGGEDCKYKASFVWDTDGRQLYSSLT--HDHPISSLAWAPGGDMFAVGSY--------N----TLRLCDKVGWSHSL  201 (323)
Q Consensus       136 ~l~~~~~d~~i~~i~v~d~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~~~~~--------~----~i~i~d~~~~~~~~  201 (323)
                      +++.|+  ..+.   +||.....-.....  ........+...++..++.|+.        .    .+..||..+..-..
T Consensus         7 l~~~GG--~~~~---~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~   81 (315)
T 4asc_A            7 IFMISE--EGAV---AYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG   81 (315)
T ss_dssp             EEEEET--TEEE---EEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred             EEEEcC--CceE---EECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence            344555  4566   99986554322111  1122223333457778777772        1    27788987654433


Q ss_pred             cCCCCccE--EEEEEcCCCCEEEEEecC--------c-EEEEEcCCCceee
Q psy11524        202 DKPDTGSV--YDLVWSNDATQIAGACAN--------V-IHIFDISSSSSSN  241 (323)
Q Consensus       202 ~~~~~~~v--~~~~~~~~~~~l~~~~~d--------~-i~iwd~~~~~~~~  241 (323)
                      ......+-  .+++.. +++.++.|+.+        . +.+||..+.+...
T Consensus        82 ~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~  131 (315)
T 4asc_A           82 MPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE  131 (315)
T ss_dssp             CCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE
T ss_pred             CCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE
Confidence            32221111  122222 56666666631        3 8899988775443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=81.11  E-value=19  Score=28.63  Aligned_cols=135  Identities=10%  Similarity=0.044  Sum_probs=66.0

Q ss_pred             EEEEeCCCCceeE---eeccCCCeEEEEECCCCCEEEEEcC----CCc---e-EeeeEEeCCCCeeeEeecCCCc--eeE
Q psy11524        105 VIKPLSPNNKATK---WQAHDGLILKVAWCSSTDLILSGGE----DCK---Y-KASFVWDTDGRQLYSSLTHDHP--ISS  171 (323)
Q Consensus       105 ~v~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~----d~~---i-~~i~v~d~~~~~~~~~~~~~~~--v~~  171 (323)
                      .+..||.....-.   +..............++..++.|+.    ++.   + ..+++||.....-..+.....+  -.+
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  104 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG  104 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence            3667777655211   1111122223333456778888873    121   1 1144888865554444322211  112


Q ss_pred             EEEecCCCEEEEEeC--------CeEEEEeCCCCeeeecCCCCccE--EEEEEcCCCCEEEEEec------Cc-EEEEEc
Q psy11524        172 LAWAPGGDMFAVGSY--------NTLRLCDKVGWSHSLDKPDTGSV--YDLVWSNDATQIAGACA------NV-IHIFDI  234 (323)
Q Consensus       172 ~~~~p~~~~l~~~~~--------~~i~i~d~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~------d~-i~iwd~  234 (323)
                      ++.. +++.++.|+.        +.+.+||+.+..-..........  .+++. .+++.++.|+.      -. +.+||.
T Consensus       105 ~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~  182 (318)
T 2woz_A          105 LGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNP  182 (318)
T ss_dssp             EEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEET
T ss_pred             eEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcC
Confidence            2222 5667666653        14788898765443332222111  12222 46666666653      23 889998


Q ss_pred             CCCceee
Q psy11524        235 SSSSSSN  241 (323)
Q Consensus       235 ~~~~~~~  241 (323)
                      .+.+...
T Consensus       183 ~~~~W~~  189 (318)
T 2woz_A          183 KKGDWKD  189 (318)
T ss_dssp             TTTEEEE
T ss_pred             CCCEEEE
Confidence            8876444

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=80.48  E-value=35  Score=31.22  Aligned_cols=216  Identities=12%  Similarity=0.088  Sum_probs=118.2

Q ss_pred             CCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEee-----ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQ-----AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD  155 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~  155 (323)
                      ..|.++.. .+| .|.++..+  -+..++..+. ...+.     .....|.++....+|.+.+. +.. -+.   .++..
T Consensus       103 ~~i~~i~~-~~g-~lWigt~~--Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~---~~~~~  173 (758)
T 3ott_A          103 TDVRTMAL-QGD-TLWLGALN--GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVG-TYN-GLC---RYIPS  173 (758)
T ss_dssp             SCEEEEEE-ETT-EEEEEETT--EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEE-ETT-EEE---EEETT
T ss_pred             ceEEEEEe-cCC-cEEEEcCC--cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEE-eCC-CHh---hCccC
Confidence            35777654 345 45445444  3566665543 33331     11346888888877776553 333 466   78876


Q ss_pred             CCeeeEeecC------CCceeEEEEecCCCEEEEEeCCeEEEEeCCCCeeeecCC-CCccEEEEEEcCCCCEEEEEecCc
Q psy11524        156 GRQLYSSLTH------DHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLDKP-DTGSVYDLVWSNDATQIAGACANV  228 (323)
Q Consensus       156 ~~~~~~~~~~------~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~  228 (323)
                      ......+...      ...|.++...+++..|..++.+.+..+|..+........ ....|.++...++|.+.+ |+.+|
T Consensus       174 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~G  252 (758)
T 3ott_A          174 NGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDNG  252 (758)
T ss_dssp             TTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETTE
T ss_pred             CCceEEecCCCccccccceeEEEEEECCCCEEEEEECCCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCCc
Confidence            5554433211      124788888777765555554468888977554332211 234588888888886544 45445


Q ss_pred             EEEEEcCCCceeeeecCC-----CCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc---------cCCCCccce
Q psy11524        229 IHIFDISSSSSSNVTAPL-----SHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---------LDKPDTGSV  294 (323)
Q Consensus       229 i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~v  294 (323)
                      +.+++..+++........     -....|.++....+|     .|-++...| +.+......         ........|
T Consensus       253 l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-----~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v  326 (758)
T 3ott_A          253 LYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEH-----NIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQF  326 (758)
T ss_dssp             EEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTC-----CEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBE
T ss_pred             eeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCC-----CEEEEeCCc-ccccccCCceeEEecccCCCCCCCceE
Confidence            888997765433210000     112357888777664     566666544 333221110         011123468


Q ss_pred             eEEEEeeCCCeeEeeecCCe
Q psy11524        295 YDLVWSSDATQIAGACANGS  314 (323)
Q Consensus       295 ~~~~~s~~g~~l~s~~~dg~  314 (323)
                      .++.-.++|.+.+. +.+|.
T Consensus       327 ~~i~~D~~g~lWiG-t~~Gl  345 (758)
T 3ott_A          327 YSLFRDSKGFYWFG-GANGL  345 (758)
T ss_dssp             EEEEECTTCCEEEE-ETTEE
T ss_pred             EEEEEcCCCCEEEe-eCCcc
Confidence            88887777764443 34553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	323
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.003
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.8 bits (125), Expect = 2e-08
 Identities = 16/120 (13%), Positives = 42/120 (35%), Gaps = 3/120 (2%)

Query: 117 KWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAP 176
            +  H+  I  + +  + +   +G +D   +   +        YS       I+S++++ 
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280

Query: 177 GGDMFAVGSY-NTLRLCDKVGWSHSLD-KPDTGSVYDLVWSNDATQIAGACA-NVIHIFD 233
            G +   G       + D +    +         V  L  ++D   +A     + + I++
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.1 bits (118), Expect = 1e-07
 Identities = 30/153 (19%), Positives = 56/153 (36%), Gaps = 11/153 (7%)

Query: 117 KWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLT-HDHPISSLAWA 175
            +  H G ++ ++    T L +SG  D   K   +WD        + T H+  I+++ + 
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAK---LWDVREGMCRQTFTGHESDINAICFF 235

Query: 176 PGGDMFAVGSY-NTLRL---CDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACA-NVIH 230
           P G+ FA GS   T RL                    +  + +S     +         +
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295

Query: 231 IFDISSSSSSNVTAPLSHSHEITQLAVNQTGSL 263
           ++D   +  + V A   H + ++ L V   G  
Sbjct: 296 VWDALKADRAGVLA--GHDNRVSCLGVTDDGMA 326

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 4/89 (4%)

Query: 66  HSWPQALSLCRTLNVSPPVYSAAWSPDSNKVLL-TQAKSLVIKPLSPNNKATKWQAHDGL 124
               Q L      N+   + S ++S     +L      +  +      ++A     HD  
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314

Query: 125 ILKVAWCSSTDLILSGGEDCKYKASFVWD 153
           +  +        + +G  D   K   +W+
Sbjct: 315 VSCLGVTDDGMAVATGSWDSFLK---IWN 340

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 14/129 (10%), Positives = 34/129 (26%), Gaps = 4/129 (3%)

Query: 66  HSWPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLI 125
               +     +  + +  ++S  + P    + +    S V           +   H+  +
Sbjct: 209 SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCV 268

Query: 126 LKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGS 185
           L + +       +S G+D        W T              + S   +        GS
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLN---AWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGS 325

Query: 186 Y-NTLRLCD 193
                 + +
Sbjct: 326 GDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 4e-06
 Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 3/120 (2%)

Query: 83  PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN-KATKWQAHDGLILKVAWCSSTDLILSGG 141
           P YS   + D     +      +I P  P + +      H  ++  V   + T  + +GG
Sbjct: 11  PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG 70

Query: 142 EDC--KYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSH 199
           + C   +  S   +         L  D+ I S    P G    VG   +      +    
Sbjct: 71  KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 5e-04
 Identities = 25/254 (9%), Positives = 55/254 (21%), Gaps = 6/254 (2%)

Query: 69  PQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATK-----WQAHDG 123
           P+      TLN    V +   S  +  V       + +  +S     +          D 
Sbjct: 39  PRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDN 98

Query: 124 LILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAV 183
            I           ++ GGE        +     R      +      +LA +P   +   
Sbjct: 99  YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS 158

Query: 184 GSYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISSSSSSNVT 243
              +       +     + +    +                   + +             
Sbjct: 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218

Query: 244 APLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDA 303
                + +I  L    TG      +        L+++             V  L ++   
Sbjct: 219 QQHDFTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCG 277

Query: 304 TQIAGACANGSLLL 317
                   +  L  
Sbjct: 278 KWFVSTGKDNLLNA 291

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.0 bits (115), Expect = 3e-07
 Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 10/158 (6%)

Query: 43  YDGTVINYPISPYISVLHSYAASH-----SWPQALSLCRTLNVSPPVYSAAWSPDSNKVL 97
            D TV  + ++            H     SW    S       +      +  P    + 
Sbjct: 163 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 222

Query: 98  LTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGR 157
            ++ K++ +  +S          HD  +  V + S    ILS  +D   +   VWD   +
Sbjct: 223 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR---VWDYKNK 279

Query: 158 QLYSSLT-HDHPISSLAWAPGGDMFAVGSY-NTLRLCD 193
           +   +L  H+H ++SL +         GS   T+++ +
Sbjct: 280 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 12/124 (9%), Positives = 35/124 (28%), Gaps = 7/124 (5%)

Query: 89  WSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKA 148
              D        +K         +    K       +  + +      + + G D     
Sbjct: 221 EFFDDQGDDYNSSK---RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS- 276

Query: 149 SFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGS-YNTLRLCDKVGWSHSLDKPDTG 207
              W+   R+   +    +  S +  A   ++  + +  +T +    +  +  L+     
Sbjct: 277 --CWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSIY 334

Query: 208 SVYD 211
            ++D
Sbjct: 335 IIFD 338

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 5e-05
 Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 7/69 (10%)

Query: 119 QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG----RQLYSSLTHDHPISSLAW 174
           QA    I  +    S  L+L    D       V+  D       L  SL + HP+    +
Sbjct: 8   QAPKDYISDIKIIPSKSLLLITSWDGSLT---VYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 175 APGGDMFAV 183
               D+   
Sbjct: 65  IDNTDLQIY 73

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.4 bits (95), Expect = 8e-05
 Identities = 13/116 (11%), Positives = 25/116 (21%)

Query: 84  VYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGED 143
                 +P  +K+      S+   P+        +  H           S     SG   
Sbjct: 20  AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 79

Query: 144 CKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSH 199
              +      T      +      P+  ++W       A       R      +  
Sbjct: 80  GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 135

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 31/283 (10%), Positives = 69/283 (24%), Gaps = 36/283 (12%)

Query: 71  ALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQ----------- 119
            + L ++L+ +  V    +S D   +     K+  +  +S  +   +             
Sbjct: 52  DVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPEN 111

Query: 120 -------AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSL 172
                  + D  I  V +      + +G ED   +   + +     +      D      
Sbjct: 112 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY 171

Query: 173 AWAPGGDMFAVGSYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACA-NVIHI 231
             +    +   G         + G        + G     V   D   IA       + +
Sbjct: 172 FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 231

Query: 232 FDISSSSS-----SNVTAPLSHSHEITQLAVNQTGS------------LQERHVAFIDKN 274
           +D  +        S   +   H   +  +   + G             L     A    +
Sbjct: 232 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 291

Query: 275 RDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLL 317
                S             V  +  + +   I     +  +L 
Sbjct: 292 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 334

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 29/302 (9%)

Query: 44  DGTVINYPISPY--ISVLHSYAASHSWPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQA 101
           + T   Y +S    ++ L   +A++  P+ L+   + +    + S  +SPD   +     
Sbjct: 82  NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 141

Query: 102 KSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYS 161
             L+      N K           +       +   L  G              G+   +
Sbjct: 142 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD-RTVRIWDLRTGQCSLT 200

Query: 162 SLTHDHPISSLAWAPGGDMFAVGSYN---------TLRLCDKVGWSHSLDKPDTGSVYDL 212
               D   +       G   A GS +         T  L +++   +        SVY +
Sbjct: 201 LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV 260

Query: 213 VWSNDATQIAGACA-NVIHIFDISSSSS----------SNVTAPLSHSHEITQLAVNQTG 261
           V++ D   +        + ++++ ++++          +     + H   +  +A  Q  
Sbjct: 261 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND 320

Query: 262 SL-----QERHVAFID-KNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSL 315
                  ++R V F D K+ +  L +  H                 +    A    +   
Sbjct: 321 EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA 380

Query: 316 LL 317
            +
Sbjct: 381 RI 382

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 23/131 (17%), Positives = 55/131 (41%), Gaps = 9/131 (6%)

Query: 114 KATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLT-HDHPISSL 172
           + T  + H   ++        + +++G +D   +   V+D+  ++    L+ HD  + +L
Sbjct: 4   QRTTLRGHMTSVIT-CLQFEDNYVITGADDKMIR---VYDSINKKFLLQLSGHDGGVWAL 59

Query: 173 AWAPGGDMFAVGSYNTLRLCDKVGWSHSLDKPDTGSV----YDLVWSNDATQIAGACANV 228
            +A GG + +  +  T+R+ D      +       S       + + N    + G+  N 
Sbjct: 60  KYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 119

Query: 229 IHIFDISSSSS 239
           +H++ +   SS
Sbjct: 120 LHVWKLPKESS 130

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 35/213 (16%), Positives = 64/213 (30%), Gaps = 10/213 (4%)

Query: 83  PVYSAAWSPDSNKVLLTQAKSLVI---KPLSPNNKATKWQAHDGLILKVAWCSSTDLILS 139
           P+   AW+ D  ++ +      V    K  +   +  + + H+G +  V W   ++ I++
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 140 GGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGS-------YNTLRLC 192
            G D       +     +     L  +     + WAP    FAVGS           +  
Sbjct: 69  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

Query: 193 DKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISSSSSSNVTAPLSHSHEI 252
           D     H      +  +      N     AG+C     IF           AP     ++
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188

Query: 253 TQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS 285
               +    S     V  +  + +     W   
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSH 221

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 5/90 (5%)

Query: 105 VIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLT 164
            +   +      ++     L             + G  +        +D   R+L  +  
Sbjct: 234 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLA----KYDLKQRKLIKAAN 289

Query: 165 HDHPISSLAWAPGGDMFAVGSY-NTLRLCD 193
            DH    +A+   GD   +G   N L + +
Sbjct: 290 LDHTYYCVAFDKKGDKLYLGGTFNDLAVFN 319

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.3 bits (84), Expect = 0.002
 Identities = 14/101 (13%), Positives = 27/101 (26%), Gaps = 5/101 (4%)

Query: 119 QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLT--HDHPISSLAWAP 176
             H+  I  ++  +    + S   +        WD             H   I+ +    
Sbjct: 9   YGHNKAITALSSSADGKTLFSADAEGHIN---SWDISTGISNRVFPDVHATMITGIKTTS 65

Query: 177 GGDMFAVGSYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSND 217
            GD+F V   + L++    G      K     +        
Sbjct: 66  KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	323
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.86
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.84
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.84
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.84
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.79
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.78
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.74
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.66
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.64
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.62
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.59
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.58
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.53
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.51
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.45
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.44
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.43
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.4
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.39
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.33
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.26
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.25
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.22
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.21
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.19
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.18
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	99.15
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.1
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.07
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.07
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.04
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.97
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.95
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.92
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.8
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.52
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.92
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.88
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.61
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.35
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.16
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.09
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.76
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.06
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.94
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.56
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.34
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.08
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.34
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.19
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.04
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.66
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	91.76
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.44
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.22
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.21
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	90.76
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	90.49
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	88.43
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	86.85
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	86.07

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-40  Score=275.95  Aligned_cols=268  Identities=14%  Similarity=0.124  Sum_probs=224.8

Q ss_pred             cccceeEeeEeccCCcceeeeeecc---ccccc----c---ceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCC
Q psy11524         42 RYDGTVINYPISPYISVLHSYAASH---SWPQA----L---SLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSP  111 (323)
Q Consensus        42 ~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~----~---~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~  111 (323)
                      +|...|.+++|+|+|+.+++.. ++   .||-.    .   .......|.+.|.+++|+|+|++|++++.+ +.|++|+.
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d-g~i~iwd~  126 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA-STLSIWDL  126 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS-SEEEEEEC
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc-cccccccc
Confidence            7999999999999997666542 22   25411    1   111223488899999999999999998777 59999997


Q ss_pred             CCc----eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeC
Q psy11524        112 NNK----ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY  186 (323)
Q Consensus       112 ~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  186 (323)
                      ...    ...+..|...+..++|+|++.++++++.|+.++   +|++. ++.......|...+.+++|++++..+++++.
T Consensus       127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~---~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~  203 (337)
T d1gxra_         127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA---VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL  203 (337)
T ss_dssp             CCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEE---EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccc
Confidence            644    455678899999999999999999999999999   99996 5556667778999999999999999999998


Q ss_pred             C-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCc
Q psy11524        187 N-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQ  264 (323)
Q Consensus       187 ~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~  264 (323)
                      + .+++||++.........+...|.+++|+|++++|++++.|+ +++||+++++....   ..|...|.+++|+|++   
T Consensus       204 d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~i~~v~~s~~g---  277 (337)
T d1gxra_         204 DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL---HLHESCVLSLKFAYCG---  277 (337)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE---CCCSSCEEEEEECTTS---
T ss_pred             cccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccccc---cccccccceEEECCCC---
Confidence            6 99999998665444445888999999999999999999999 99999998887654   7788999999999998   


Q ss_pred             cceEEEEeCCCCeEEEecccc---cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        265 ERHVAFIDKNRDLYLSMWSHS---LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       265 d~~l~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                       ..+++++.++.+++|+....   ....|...|.+++|+|++++|++|+.||+|+||+|+
T Consensus       278 -~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         278 -KWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             -SEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             -CEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence             78888888888999988764   222357899999999999999999999999999985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-37  Score=254.46  Aligned_cols=268  Identities=15%  Similarity=0.169  Sum_probs=230.1

Q ss_pred             eEeecccceeEeeEeccCCcceeeeeecccccccccee--------eecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEE
Q psy11524         38 LTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLC--------RTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKP  108 (323)
Q Consensus        38 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~  108 (323)
                      .+++||.+.|.+++|+|++.    ++++++.|++.++|        +.+. |...|.+++|+|++.+++++..+. .+..
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~----~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~-~~~~   85 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFS----VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM-TIKL   85 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSS----EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS-CCCE
T ss_pred             EEEcCCCCCeEEEEEcCCCC----EEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccc-cccc
Confidence            46889999999999999995    45555555555554        3343 899999999999999999887664 6666


Q ss_pred             eCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEe
Q psy11524        109 LSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGS  185 (323)
Q Consensus       109 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  185 (323)
                      |+....  ...+..|...+.++.|+|+++.+++++.|+.++   +||++ ++....+..|...+.+++|+|++.+|++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  162 (317)
T d1vyhc1          86 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK---MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS  162 (317)
T ss_dssp             EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEE---EEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccccccccceeeeccCCCceEEeeccCccee---EeecccceeeeEEccCCCcceeeecccCCCEEEEEe
Confidence            665544  555678899999999999999999999999999   99995 677788888999999999999999999999


Q ss_pred             CC-eEEEEeCCC-CeeeecCCCCccEEEEEEcCCC--------------------CEEEEEecCc-EEEEEcCCCceeee
Q psy11524        186 YN-TLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDA--------------------TQIAGACANV-IHIFDISSSSSSNV  242 (323)
Q Consensus       186 ~~-~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~--------------------~~l~~~~~d~-i~iwd~~~~~~~~~  242 (323)
                      .+ .+++|+... .....+..+...+.+++|+|++                    .++++++.|+ |++||+++++++.+
T Consensus       163 ~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~  242 (317)
T d1vyhc1         163 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT  242 (317)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             CCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEE
Confidence            96 999999875 4555677788899999998754                    4688999999 99999999999888


Q ss_pred             ecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEE
Q psy11524        243 TAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLG  318 (323)
Q Consensus       243 ~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~  318 (323)
                        +.+|...|.+++|+|++    ..|++++.++.+.+|++...    ....|...|++++|+|++++|++|+.||+|++|
T Consensus       243 --~~~~~~~v~~~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iW  316 (317)
T d1vyhc1         243 --LVGHDNWVRGVLFHSGG----KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW  316 (317)
T ss_dssp             --EECCSSCEEEEEECSSS----SCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             --EeCCCCCEEEEEECCCC----CEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEe
Confidence              68899999999999998    88999999999999998765    445688999999999999999999999999999


Q ss_pred             E
Q psy11524        319 T  319 (323)
Q Consensus       319 ~  319 (323)
                      +
T Consensus       317 d  317 (317)
T d1vyhc1         317 E  317 (317)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.7e-37  Score=253.59  Aligned_cols=271  Identities=15%  Similarity=0.125  Sum_probs=213.8

Q ss_pred             cccceeEeeEeccCCcceeeeeecc--ccc-cccceeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc---
Q psy11524         42 RYDGTVINYPISPYISVLHSYAASH--SWP-QALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK---  114 (323)
Q Consensus        42 ~~~~~v~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~---  114 (323)
                      .+.+....++++|+|+.++......  .|+ .+....+.+ .|...|++++|+|+|++||+|+.+ +.|++|+....   
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~d-g~i~iwd~~~~~~~   93 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH-GNVRIWDTTQTTHI   93 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETT-SEEEEEESSSTTCC
T ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccC-ceEeeeeeeccccc
Confidence            3445666789999998776432211  254 233344444 589999999999999999999877 59999998765   


Q ss_pred             -eeEeeccCCCeEEEEECCCCCEEEEEcC--CCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCE-EEEEeCC-e
Q psy11524        115 -ATKWQAHDGLILKVAWCSSTDLILSGGE--DCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDM-FAVGSYN-T  188 (323)
Q Consensus       115 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~-l~~~~~~-~  188 (323)
                       ...+..|.++|.+++|+|++++|++++.  +..++   +|+++ ++....+..|...|.+++|+|++++ |++|+.| .
T Consensus        94 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~---v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~  170 (311)
T d1nr0a1          94 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH---VFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT  170 (311)
T ss_dssp             EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE---EEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC
T ss_pred             cccccccccCcccccccccccccccccccccccccc---ccccccccccccccccccccccccccccceeeecccccccc
Confidence             3457889999999999999999999875  45588   99986 6667778889999999999999886 7778886 9


Q ss_pred             EEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeec-----CCCCccceEEEEEccCC
Q psy11524        189 LRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTA-----PLSHSHEITQLAVNQTG  261 (323)
Q Consensus       189 i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~~p~g  261 (323)
                      |++||+++. .......|...|.++.|+|++++|++++.|+ |++||..+++....+.     ..+|...|.+++|+|++
T Consensus       171 i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~  250 (311)
T d1nr0a1         171 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG  250 (311)
T ss_dssp             EEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred             cccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCC
Confidence            999998865 4556778899999999999999999999999 9999999887766531     23578899999999998


Q ss_pred             CCccceEEEEeCCCCeEEEecccc----cCCCC-ccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        262 SLQERHVAFIDKNRDLYLSMWSHS----LDKPD-TGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       262 ~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~-~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                          ..|++++.|+.+++|++.+.    ....| ......+++.++++.|++++.||.|++|+.
T Consensus       251 ----~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         251 ----TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP  310 (311)
T ss_dssp             ----SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred             ----CEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeC
Confidence                78888888888999987764    11222 222333445556678999999999999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-37  Score=255.11  Aligned_cols=241  Identities=15%  Similarity=0.098  Sum_probs=209.4

Q ss_pred             ccccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-------eeEeeccCCCeEEEEECCCCCEEEEEc
Q psy11524         69 PQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-------ATKWQAHDGLILKVAWCSSTDLILSGG  141 (323)
Q Consensus        69 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~  141 (323)
                      +...+....+.|...|++++|+|+|++|++|+ + +.|++||....       ......|.+.|.+++|+|++++|++++
T Consensus        39 p~~~~~~~~~~H~~~V~~v~fs~~g~~latg~-d-g~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~  116 (337)
T d1gxra_          39 PRHARQINTLNHGEVVCAVTISNPTRHVYTGG-K-GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG  116 (337)
T ss_dssp             CSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-B-SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE
T ss_pred             CCCceEEEECCCCCcEEEEEECCCCCEEEEEE-C-CEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEee
Confidence            34557778889999999999999999999886 5 58999997643       223357889999999999999999999


Q ss_pred             CCCceEeeeEEeCC---CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcC
Q psy11524        142 EDCKYKASFVWDTD---GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSN  216 (323)
Q Consensus       142 ~d~~i~~i~v~d~~---~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~  216 (323)
                      .||.|+   +||+.   .+....+..|...+..++|+|++.++++++.+ .+++||+.+. .......|...+.+++|++
T Consensus       117 ~dg~i~---iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~  193 (337)
T d1gxra_         117 EASTLS---IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN  193 (337)
T ss_dssp             SSSEEE---EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred             cccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999   99985   33455677888999999999999999999996 9999998865 4556677899999999999


Q ss_pred             CCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc---cCCCCcc
Q psy11524        217 DATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---LDKPDTG  292 (323)
Q Consensus       217 ~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---~~~~~~~  292 (323)
                      ++..+++++.|+ +++||+++++.+..   ..+...|.+++|+|++    ..++++..++.+.+|++...   ....|..
T Consensus       194 ~~~~~~~~~~d~~v~i~d~~~~~~~~~---~~~~~~i~~l~~~~~~----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  266 (337)
T d1gxra_         194 DGTKLWTGGLDNTVRSWDLREGRQLQQ---HDFTSQIFSLGYCPTG----EWLAVGMESSNVEVLHVNKPDKYQLHLHES  266 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEE---EECSSCEEEEEECTTS----SEEEEEETTSCEEEEETTSSCEEEECCCSS
T ss_pred             cccccccccccccccccccccceeecc---cccccceEEEEEcccc----cccceecccccccccccccccccccccccc
Confidence            999999999999 99999999998876   4577899999999998    88999999999999998765   4456789


Q ss_pred             ceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        293 SVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       293 ~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      .|.+++|+|+|++|++++.||.|++|++.
T Consensus       267 ~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~  295 (337)
T d1gxra_         267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ccceEEECCCCCEEEEEeCCCeEEEEECC
Confidence            99999999999999999999999999874

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-36  Score=255.84  Aligned_cols=269  Identities=16%  Similarity=0.221  Sum_probs=211.7

Q ss_pred             eecccceeEeeEeccCCcceeeeeeccccccccceeee--------c-------------------CCCCCEEEEEEcCC
Q psy11524         40 IRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRT--------L-------------------NVSPPVYSAAWSPD   92 (323)
Q Consensus        40 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-------------------~~~~~v~~~~~sp~   92 (323)
                      ..+|.+.|.+++|+|||+.++    +|+ |++.++|..        +                   .|...|++++|+|+
T Consensus        58 ~~~H~~~V~~l~fs~dg~~la----sg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  132 (388)
T d1erja_          58 SLDHTSVVCCVKFSNDGEYLA----TGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD  132 (388)
T ss_dssp             EEECSSCCCEEEECTTSSEEE----EEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred             eCCCCCcEEEEEECCCCCEEE----EEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC
Confidence            346999999999999996554    443 333333321        1                   25677999999999


Q ss_pred             CCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCcee
Q psy11524         93 SNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPIS  170 (323)
Q Consensus        93 ~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~  170 (323)
                      |++|++|+.+ +.|++|+....  ...+.+|...|.++.|++++..+++++.++.++   +||...........+.....
T Consensus       133 ~~~l~s~~~d-g~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~---~~d~~~~~~~~~~~~~~~~~  208 (388)
T d1erja_         133 GKFLATGAED-RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR---IWDLRTGQCSLTLSIEDGVT  208 (388)
T ss_dssp             SSEEEEEETT-SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE---EEETTTTEEEEEEECSSCEE
T ss_pred             CCcceecccc-cccccccccccccccccccccccccccccccccccccccccceeee---eeeccccccccccccccccc
Confidence            9999998877 59999998765  566788999999999999999999999999999   99997655555545555566


Q ss_pred             EEEEec-CCCEEEEEeCC-eEEEEeCCCC-eee-------ecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCce
Q psy11524        171 SLAWAP-GGDMFAVGSYN-TLRLCDKVGW-SHS-------LDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSS  239 (323)
Q Consensus       171 ~~~~~p-~~~~l~~~~~~-~i~i~d~~~~-~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~  239 (323)
                      ++.+.| ++++|++++.| .|++||.... ...       ...+|...|.+++|+|++++|++++.|+ |++||+++++.
T Consensus       209 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~  288 (388)
T d1erja_         209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN  288 (388)
T ss_dssp             EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----
T ss_pred             cccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcc
Confidence            666665 78999999986 9999998743 222       2345788999999999999999999999 99999876543


Q ss_pred             eee----------ecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEE------
Q psy11524        240 SNV----------TAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVW------  299 (323)
Q Consensus       240 ~~~----------~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~------  299 (323)
                      ...          .....|...|.+++|+|++    ..|++++.++.+++|++...    ..+.|.+.|.++++      
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~  364 (388)
T d1erja_         289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQND----EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL  364 (388)
T ss_dssp             ----------CEEEEEECCSSCEEEEEECGGG----CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT
T ss_pred             ccccccccccceeeecccccceEEEEEECCCC----CEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCccc
Confidence            221          0134577889999999998    88999999999999998765    45678999999875      


Q ss_pred             eeCCCeeEeeecCCeEEEEEee
Q psy11524        300 SSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       300 s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +|++++|++|+.||+|++|++.
T Consensus       365 spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         365 GPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             CTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCCCCEEEEEeCCCEEEEEeee
Confidence            6789999999999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.4e-36  Score=247.04  Aligned_cols=231  Identities=14%  Similarity=0.160  Sum_probs=198.4

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC-
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG-  156 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~-  156 (323)
                      +.+.+..++++|+|+.|+++..+  .+.+|+....  ...+.+|...|.+++|+|+|++|++|+.||+|+   +||+.. 
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~~~--~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~---iwd~~~~   90 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCNGT--SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVR---IWDTTQT   90 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEETT--EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEE---EEESSST
T ss_pred             CCCCeEEEEEcCCCCEEEEEeCC--EEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEe---eeeeecc
Confidence            44567789999999999988544  6788887654  667889999999999999999999999999999   999953 


Q ss_pred             C--eeeEeecCCCceeEEEEecCCCEEEEEeCC---eEEEEeCCC-CeeeecCCCCccEEEEEEcCCCCE-EEEEecCc-
Q psy11524        157 R--QLYSSLTHDHPISSLAWAPGGDMFAVGSYN---TLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQ-IAGACANV-  228 (323)
Q Consensus       157 ~--~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~---~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~-  228 (323)
                      .  ....+..|..+|.+++|+|+++++++++.+   .+++|++.. .....+.+|...|.+++|+|++++ |++++.|+ 
T Consensus        91 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~  170 (311)
T d1nr0a1          91 THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT  170 (311)
T ss_dssp             TCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC
T ss_pred             ccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence            2  234567889999999999999999998873   589999874 455677789999999999999885 78899999 


Q ss_pred             EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----------cCCCCccceeEE
Q psy11524        229 IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----------LDKPDTGSVYDL  297 (323)
Q Consensus       229 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~v~~~  297 (323)
                      |++||+++++....  +..|..+|.+++|+|++    +.+++++.++.+.+|+....           ....|...|.++
T Consensus       171 i~i~d~~~~~~~~~--~~~~~~~i~~v~~~p~~----~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~  244 (311)
T d1nr0a1         171 VAIFEGPPFKFKST--FGEHTKFVHSVRYNPDG----SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL  244 (311)
T ss_dssp             EEEEETTTBEEEEE--ECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEE
T ss_pred             cccccccccccccc--cccccccccccccCccc----ccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999998887  68899999999999998    78888888888888887653           234578899999


Q ss_pred             EEeeCCCeeEeeecCCeEEEEEee
Q psy11524        298 VWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       298 ~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +|+|++++|++|+.||.|++|++.
T Consensus       245 ~~s~~~~~l~tgs~Dg~v~iwd~~  268 (311)
T d1nr0a1         245 TWSPDGTKIASASADKTIKIWNVA  268 (311)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETT
T ss_pred             ccCCCCCEEEEEeCCCeEEEEECC
Confidence            999999999999999999999964

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.2e-36  Score=253.43  Aligned_cols=267  Identities=13%  Similarity=0.122  Sum_probs=208.7

Q ss_pred             cceeEeeEeccCCcceeeeeecc---cccccc---ceeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--
Q psy11524         44 DGTVINYPISPYISVLHSYAASH---SWPQAL---SLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--  114 (323)
Q Consensus        44 ~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--  114 (323)
                      .++|.+++|+|+|+.++....++   .|+...   .....+ .|..+|++++|+|++++|++++.| +.|++|+....  
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D-~~i~vWd~~~~~~   85 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-RNAYVWTLKGRTW   85 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-SCEEEEEEETTEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECC-CeEEEEeeccccc
Confidence            46899999999997666554444   365322   233444 489999999999999999998877 59999998654  


Q ss_pred             --eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC-Ce----eeEeecCCCceeEEEEecCCCEEEEEeCC
Q psy11524        115 --ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG-RQ----LYSSLTHDHPISSLAWAPGGDMFAVGSYN  187 (323)
Q Consensus       115 --~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~-~~----~~~~~~~~~~v~~~~~~p~~~~l~~~~~~  187 (323)
                        ...+..|...|.+++|+|+++.|++++.|++++   +|+++. ..    ......|...|.+++|+|++++|++++.|
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~---i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D  162 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS---ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  162 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEE---EEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccccccccccccccccceeecccCcce---eeeeecccccccccccccccccccccccccccccceeccccC
Confidence              334567889999999999999999999999999   998842 21    22334578899999999999999999996


Q ss_pred             -eEEEEeCCCC-------------------eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCC
Q psy11524        188 -TLRLCDKVGW-------------------SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPL  246 (323)
Q Consensus       188 -~i~i~d~~~~-------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~  246 (323)
                       .+++||....                   .......|...+.+++|+|+|++|++++.|+ |++||+.+++.+..  +.
T Consensus       163 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~--~~  240 (371)
T d1k8kc_         163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT--LA  240 (371)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE--EE
T ss_pred             cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceee--ee
Confidence             9999996421                   1234456788899999999999999999999 99999999998888  67


Q ss_pred             CCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----------------------------------------
Q psy11524        247 SHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----------------------------------------  285 (323)
Q Consensus       247 ~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----------------------------------------  285 (323)
                      .|..+|.+++|+|++    ..|+.+ .++.+.+|.....                                         
T Consensus       241 ~~~~~v~s~~fs~d~----~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (371)
T d1k8kc_         241 SETLPLLAVTFITES----SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA  315 (371)
T ss_dssp             CSSCCEEEEEEEETT----EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-------
T ss_pred             cccccceeeeecCCC----CEEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEecccc
Confidence            888999999999997    555443 3444443332110                                         


Q ss_pred             ----cCCCCccceeEEEEeeCCC----eeEeeecCCeEEEEEee
Q psy11524        286 ----LDKPDTGSVYDLVWSSDAT----QIAGACANGSLLLGTII  321 (323)
Q Consensus       286 ----~~~~~~~~v~~~~~s~~g~----~l~s~~~dg~i~~~~l~  321 (323)
                          ....|...|+++++.|.+.    .++|++.||.|++|++.
T Consensus       316 ~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~  359 (371)
T d1k8kc_         316 AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR  359 (371)
T ss_dssp             --CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred             ccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCC
Confidence                1223778899999998753    58899999999999984

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.4e-35  Score=244.01  Aligned_cols=277  Identities=14%  Similarity=0.172  Sum_probs=223.6

Q ss_pred             eeeeeEeecccceeEeeEeccCCcceeeeeecc---ccc-cccceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEE
Q psy11524         34 VKNHLTIRRYDGTVINYPISPYISVLHSYAASH---SWP-QALSLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKP  108 (323)
Q Consensus        34 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~  108 (323)
                      ++...+++||.+.|.+++|+|++..+++...++   .|| .+.+....+. |..+|.+++|+|+++++++++.+ +.+.+
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-~~i~~  123 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD-NICSI  123 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETT-CCEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeeccc-ceeec
Confidence            355678999999999999999995544443333   243 2233333443 88999999999999999998877 58888


Q ss_pred             eCCCCc------eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEE
Q psy11524        109 LSPNNK------ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMF  181 (323)
Q Consensus       109 ~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l  181 (323)
                      |+....      ...+..|..........+ +..+.....+....   .+... .........+...+....+.+.+.++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (340)
T d1tbga_         124 YNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCA---LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF  199 (340)
T ss_dssp             EESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEE---EEETTTTEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             ccccccccccccceeccccccccccccccc-cccccccccccccc---ccccccccccccccccceeEeeecccccccee
Confidence            876543      345566777666655544 45677777788888   88775 44455556677789999999999999


Q ss_pred             EEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEc
Q psy11524        182 AVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVN  258 (323)
Q Consensus       182 ~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  258 (323)
                      ++++.+ .+++||++.. ....+.+|...|.+++|+|++++|++++.|+ |++||++..+.+.......+...+.+++|+
T Consensus       200 ~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  279 (340)
T d1tbga_         200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS  279 (340)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             EEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEEC
Confidence            999986 9999998754 5567788999999999999999999999999 999999998887765456677889999999


Q ss_pred             cCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        259 QTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       259 p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                      |++    ..|++++.++.+++|++...    ....|...|++++|+|++++|++|+.||.|++|+
T Consensus       280 ~~~----~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         280 KSG----RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SSS----CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCC----CEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            998    89999999999999998765    5667899999999999999999999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.1e-34  Score=236.64  Aligned_cols=272  Identities=11%  Similarity=0.088  Sum_probs=207.3

Q ss_pred             eeeEeecccceeEeeEeccCCcceeeeeecc---ccc-cccceeeec--CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEe
Q psy11524         36 NHLTIRRYDGTVINYPISPYISVLHSYAASH---SWP-QALSLCRTL--NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPL  109 (323)
Q Consensus        36 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~  109 (323)
                      ..+.+.||.+.|.+++|+|+++.+++...++   .|| .+.+..+.+  .|...|++++|+|+|++++ ++.+ +.+++|
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~-~~~d-~~v~~~   81 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT-VSWD-DHLKVV   81 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEE-EETT-TEEEEE
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeec-ccce-eeEEEe
Confidence            3567899999999999999996555443333   244 233333444  2789999999999998655 4455 488999


Q ss_pred             CCCCc-----eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEE
Q psy11524        110 SPNNK-----ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVG  184 (323)
Q Consensus       110 ~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  184 (323)
                      +....     ......+...+.+++|+|+++.+++++ ++.+.   +|+...  .... .....+.+++|+|++++++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~---~~~~~~--~~~~-~~~~~~~~~~~s~~~~~l~~g  154 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIA---IYSHGK--LTEV-PISYNSSCVALSNDKQFVAVG  154 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEE---EEETTE--EEEE-ECSSCEEEEEECTTSCEEEEE
T ss_pred             ccCCccccccccccccccccccccccccccccccccc-ccccc---cccccc--cccc-ccccccccccccccccccccc
Confidence            87543     223456778899999999998777665 56788   998542  1222 234567889999999999999


Q ss_pred             eCC-eEEEEeCCCCeee--ecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeee-cCCCCccceEEEEEcc
Q psy11524        185 SYN-TLRLCDKVGWSHS--LDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVT-APLSHSHEITQLAVNQ  259 (323)
Q Consensus       185 ~~~-~i~i~d~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~p  259 (323)
                      +.+ .+++||+++....  ....|...|.+++|+|++++|++++.|+ |++||+.++...... .+..|..+|++++|+|
T Consensus       155 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  234 (299)
T d1nr0a2         155 GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP  234 (299)
T ss_dssp             ETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            996 9999998765432  3445888999999999999999999999 999999887655431 2456889999999999


Q ss_pred             CCCCccceEEEEeCCCCeEEEecccc------cC-CCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        260 TGSLQERHVAFIDKNRDLYLSMWSHS------LD-KPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       260 ~g~~~d~~l~~~~~~~~~~~~~~~~~------~~-~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      ++    ..+++++.++.+++|++...      .. ..+...+.++.| +++++|++++.||.|++|+|.
T Consensus       235 ~~----~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         235 DN----VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             TS----SEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             cc----cceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            98    89999999999999998764      12 223456666655 567899999999999999984

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.5e-35  Score=247.94  Aligned_cols=229  Identities=18%  Similarity=0.331  Sum_probs=191.2

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc----eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK----ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG  156 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~  156 (323)
                      .++|+|++|+|+|++||+++.+ +.|++|+..+.    ...+.+|.++|.+++|+|++++|++++.|++|+   +||++.
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~-~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~---vWd~~~   82 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNN-HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAY---VWTLKG   82 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSS-SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEE---EEEEET
T ss_pred             CCCeEEEEECCCCCEEEEEeCC-CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEE---EEeecc
Confidence            5789999999999999998776 59999998644    456789999999999999999999999999999   999964


Q ss_pred             Ce---eeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-----eeeecCCCCccEEEEEEcCCCCEEEEEecC
Q psy11524        157 RQ---LYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-----SHSLDKPDTGSVYDLVWSNDATQIAGACAN  227 (323)
Q Consensus       157 ~~---~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  227 (323)
                      ..   ...+..+...|.+++|+|+++.|++++.+ .+++|++...     .......|...|.+++|+|++++|++++.|
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D  162 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  162 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccC
Confidence            33   34456678899999999999999999996 9999986532     123456688899999999999999999999


Q ss_pred             c-EEEEEcCCCc------------------eeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc---
Q psy11524        228 V-IHIFDISSSS------------------SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---  285 (323)
Q Consensus       228 ~-i~iwd~~~~~------------------~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---  285 (323)
                      + +++||.....                  .+..  ...|...+.+++|+|++    ..|+++..++.+.+|++...   
T Consensus       163 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~g----~~l~s~~~d~~i~iwd~~~~~~~  236 (371)
T d1k8kc_         163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE--SSSSCGWVHGVCFSANG----SRVAWVSHDSTVCLADADKKMAV  236 (371)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE--CCCCSSCEEEEEECSSS----SEEEEEETTTEEEEEEGGGTTEE
T ss_pred             cEEEEEeeccCccccccccccccccccceeeeee--ccCccCcEEEEEeeccc----ccccccccCCcceEEeeecccce
Confidence            9 9999976432                  2333  56788899999999998    78888999999999998775   


Q ss_pred             -cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        286 -LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       286 -~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                       ....|..+|.+++|+|++++|++|. |+.+++|..
T Consensus       237 ~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~  271 (371)
T d1k8kc_         237 ATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTY  271 (371)
T ss_dssp             EEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEE
T ss_pred             eeeecccccceeeeecCCCCEEEEEc-CCceEEEEe
Confidence             3455788999999999998877655 777777764

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.3e-33  Score=228.25  Aligned_cols=238  Identities=15%  Similarity=0.172  Sum_probs=207.7

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-  155 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-  155 (323)
                      +|.++|++++|+|++++|++|+.| +.|++||....  ...+..|...|.+++|+|++.+++++..++.+.   +|+.. 
T Consensus        15 GH~~~I~~l~~sp~~~~l~s~s~D-g~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~---~~~~~~   90 (317)
T d1vyhc1          15 GHRSPVTRVIFHPVFSVMVSASED-ATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK---LWDFQG   90 (317)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEESS-SCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC---EEETTS
T ss_pred             CCCCCeEEEEEcCCCCEEEEEeCC-CeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccc---cccccc
Confidence            499999999999999999998877 69999998765  677889999999999999999999999999999   99985 


Q ss_pred             CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCC-CeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEE
Q psy11524        156 GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIF  232 (323)
Q Consensus       156 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iw  232 (323)
                      .+....+..+...+.++.|+|++..+++++.| .+++||++. .....+..|...+.+++|+|++++|++++.|+ |++|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~  170 (317)
T d1vyhc1          91 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW  170 (317)
T ss_dssp             SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEE
Confidence            56666677889999999999999999999997 999999874 45667778999999999999999999999999 9999


Q ss_pred             EcCCCceeeeecCCCCccceEEEEEccCCC----------------CccceEEEEeCCCCeEEEecccc----cCCCCcc
Q psy11524        233 DISSSSSSNVTAPLSHSHEITQLAVNQTGS----------------LQERHVAFIDKNRDLYLSMWSHS----LDKPDTG  292 (323)
Q Consensus       233 d~~~~~~~~~~~~~~~~~~v~~~~~~p~g~----------------~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~  292 (323)
                      +..+++....  +..+...+..++|+|++.                .....+..++.++.+.+|+....    ....|..
T Consensus       171 ~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  248 (317)
T d1vyhc1         171 VVATKECKAE--LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN  248 (317)
T ss_dssp             ETTTCCEEEE--ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             eeccceeeEE--EecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCC
Confidence            9999998888  688999999999999865                22345666777788888877664    3445789


Q ss_pred             ceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        293 SVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       293 ~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      .|.+++|+|++++|++++.||.|++|++.+
T Consensus       249 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~  278 (317)
T d1vyhc1         249 WVRGVLFHSGGKFILSCADDKTLRVWDYKN  278 (317)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            999999999999999999999999999753

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.9e-33  Score=228.00  Aligned_cols=235  Identities=18%  Similarity=0.214  Sum_probs=191.8

Q ss_pred             eeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEe-eccCCCeEEEEECCCCCEEEEEcCCCceEee
Q psy11524         74 LCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKW-QAHDGLILKVAWCSSTDLILSGGEDCKYKAS  149 (323)
Q Consensus        74 ~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i  149 (323)
                      +.+.+ +|.+.|++++|+|+|++|++|+.| +.|++||..+.  ...+ ..|...|.+++|+|++++ ++++.|+.++  
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~D-g~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~--   79 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAE-GHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLK--   79 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETT-SCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEE--
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCC-CeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEE--
Confidence            34555 499999999999999999998877 69999998764  3344 468899999999999875 4566799999  


Q ss_pred             eEEeCCCCee----eEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEe
Q psy11524        150 FVWDTDGRQL----YSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGAC  225 (323)
Q Consensus       150 ~v~d~~~~~~----~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  225 (323)
                       +|+......    .....+...+.+++|+|+++.+++++.+.+++|+..... ...  ....+.+++|+|++++|++++
T Consensus        80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~-~~~--~~~~~~~~~~s~~~~~l~~g~  155 (299)
T d1nr0a2          80 -VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT-EVP--ISYNSSCVALSNDKQFVAVGG  155 (299)
T ss_dssp             -EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEE-EEE--CSSCEEEEEECTTSCEEEEEE
T ss_pred             -EeccCCcccccccccccccccccccccccccccccccccccccccccccccc-ccc--ccccccccccccccccccccc
Confidence             999853322    223446778899999999999988888899999965322 222  344678999999999999999


Q ss_pred             cCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-------cCCCCccceeEE
Q psy11524        226 ANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-------LDKPDTGSVYDL  297 (323)
Q Consensus       226 ~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~  297 (323)
                      .|+ |++||+++++..... ...|...|.+++|+|++    ..+++++.++.+.+|++...       ....|...|.++
T Consensus       156 ~dg~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~----~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l  230 (299)
T d1nr0a2         156 QDSKVHVYKLSGASVSEVK-TIVHPAEITSVAFSNNG----AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV  230 (299)
T ss_dssp             TTSEEEEEEEETTEEEEEE-EEECSSCEEEEEECTTS----SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEE
T ss_pred             ccccccccccccccccccc-ccccccccccccccccc----ccccccccccccccccccccccccccccccccccccccc
Confidence            999 999999887654421 35678899999999998    89999999999999998764       345678999999


Q ss_pred             EEeeCCCeeEeeecCCeEEEEEee
Q psy11524        298 VWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       298 ~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +|+|++++|++|+.||.|++|++.
T Consensus       231 ~~s~~~~~l~sgs~dg~i~iwd~~  254 (299)
T d1nr0a2         231 SWSPDNVRLATGSLDNSVIVWNMN  254 (299)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETT
T ss_pred             cccccccceEEEcCCCEEEEEECC
Confidence            999999999999999999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.7e-33  Score=234.85  Aligned_cols=239  Identities=17%  Similarity=0.219  Sum_probs=195.7

Q ss_pred             eeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEe------------------eccCCCeEEEEECCC
Q psy11524         74 LCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKW------------------QAHDGLILKVAWCSS  133 (323)
Q Consensus        74 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~------------------~~~~~~v~~~~~~~~  133 (323)
                      +.+.++|.+.|+|++|+|+|++||+|+ + +.|++|+....  ...+                  ..|...|.+++|+|+
T Consensus        55 l~~~~~H~~~V~~l~fs~dg~~lasg~-d-~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  132 (388)
T d1erja_          55 LHKSLDHTSVVCCVKFSNDGEYLATGC-N-KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD  132 (388)
T ss_dssp             EEEEEECSSCCCEEEECTTSSEEEEEC-B-SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred             eEeeCCCCCcEEEEEECCCCCEEEEEe-C-CeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC
Confidence            445667999999999999999999875 5 48999987654  2222                  346677999999999


Q ss_pred             CCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecCCCCccEEE
Q psy11524        134 TDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYD  211 (323)
Q Consensus       134 ~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~v~~  211 (323)
                      +++|++|+.||.|+   +||.. ++......+|...|.+++|++++..+++++.+ .+++||.+.........+.....+
T Consensus       133 ~~~l~s~~~dg~v~---i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~  209 (388)
T d1erja_         133 GKFLATGAEDRLIR---IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTT  209 (388)
T ss_dssp             SSEEEEEETTSCEE---EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEE
T ss_pred             CCcceecccccccc---cccccccccccccccccccccccccccccccccccccceeeeeeecccccccccccccccccc
Confidence            99999999999999   99995 66677788899999999999999999999986 999999987655444445555566


Q ss_pred             EEEcC-CCCEEEEEecCc-EEEEEcCCCceeeeec-----CCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        212 LVWSN-DATQIAGACANV-IHIFDISSSSSSNVTA-----PLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       212 ~~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      +.+++ ++++|++++.|+ |++||.+++.....+.     ..+|...|.+++|+|++    ..+++++.++.+.+|++..
T Consensus       210 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~----~~l~s~~~d~~i~iwd~~~  285 (388)
T d1erja_         210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG----QSVVSGSLDRSVKLWNLQN  285 (388)
T ss_dssp             EEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS----SEEEEEETTSEEEEEEC--
T ss_pred             ccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCC----CEEEEEECCCcEEEEeccC
Confidence            66665 889999999999 9999999988766531     23578899999999998    8899999999999998765


Q ss_pred             c----------------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        285 S----------------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       285 ~----------------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      .                ....|...|.+++|+|+|++|++|+.||.|++|++.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~  338 (388)
T d1erja_         286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK  338 (388)
T ss_dssp             -------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred             CccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            3                122457789999999999999999999999999974

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-31  Score=219.65  Aligned_cols=265  Identities=12%  Similarity=0.060  Sum_probs=195.6

Q ss_pred             eeEeeEeccCCcceeeeeecc----ccccc---ccee-eecCC-CCCEEEEEEcC--CCCeEEEEeeCCeEEEEeCCCCc
Q psy11524         46 TVINYPISPYISVLHSYAASH----SWPQA---LSLC-RTLNV-SPPVYSAAWSP--DSNKVLLTQAKSLVIKPLSPNNK  114 (323)
Q Consensus        46 ~v~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~-~~~~~-~~~v~~~~~sp--~~~~l~~~~~~~~~v~~~~~~~~  114 (323)
                      .+.++.|+|++..++......    .|+..   .... ...+| ...|++++|+|  +|++|++++.| +.|++|+....
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~D-g~i~iWd~~~~   97 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES-GKVIVWGWTFD   97 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETT-SEEEEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCC-CCEEEeeecCC
Confidence            456889999997665332111    24321   1112 22345 57899999998  56788887666 69999987532


Q ss_pred             ----------eeEeeccCCCeEEEEECCCCCEEEEEcC--CCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCE-
Q psy11524        115 ----------ATKWQAHDGLILKVAWCSSTDLILSGGE--DCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDM-  180 (323)
Q Consensus       115 ----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~-  180 (323)
                                ...+..|.++|.+++|+|+++++++++.  ++.+.   +|+.+ ++.+..+.+|...|.+++|+|++.. 
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  174 (325)
T d1pgua1          98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGV---FISWDSGNSLGEVSGHSQRINACHLKQSRPMR  174 (325)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEE---EEETTTCCEEEECCSCSSCEEEEEECSSSSCE
T ss_pred             cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEE---EEeecccccceeeeecccccccccccccccce
Confidence                      1234568899999999999999887764  66788   89885 6778888899999999999998775 


Q ss_pred             EEEEeCC-eEEEEeCCCCee----eecCCCCccEEEEEEcCC-CCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceE
Q psy11524        181 FAVGSYN-TLRLCDKVGWSH----SLDKPDTGSVYDLVWSND-ATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEIT  253 (323)
Q Consensus       181 l~~~~~~-~i~i~d~~~~~~----~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~  253 (323)
                      +++++.| .+++||......    .....|...|.+++|+|+ +.+|++++.|+ |++||+++++.+.+  +.+|..++.
T Consensus       175 ~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~--l~~~~~~v~  252 (325)
T d1pgua1         175 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY--IEDDQEPVQ  252 (325)
T ss_dssp             EEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE--CCBTTBCCC
T ss_pred             EEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccc--ccccccccc
Confidence            6677775 999999875432    234457788999999996 68899999999 99999999999888  677777766


Q ss_pred             EEEEc---cCCCCccceEEEEeCCCCeEEEecccc------cCCCCccceeEEEEeeC-CCeeEeeecCCeEEEEEe
Q psy11524        254 QLAVN---QTGSLQERHVAFIDKNRDLYLSMWSHS------LDKPDTGSVYDLVWSSD-ATQIAGACANGSLLLGTI  320 (323)
Q Consensus       254 ~~~~~---p~g~~~d~~l~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~s~~-g~~l~s~~~dg~i~~~~l  320 (323)
                      .+.|+   |++    ..+++++.|+.+++|++...      ....|...+..+++.+. +.+|++++.||.|++|+|
T Consensus       253 ~~~~s~~~~dg----~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         253 GGIFALSWLDS----QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             SCEEEEEESSS----SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             cceeeeeccCC----CEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            55555   566    68888888888889988764      12223333444444433 247899999999999986

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.3e-31  Score=212.16  Aligned_cols=262  Identities=13%  Similarity=0.100  Sum_probs=204.0

Q ss_pred             eeeEeecccceeEeeEeccCCcceeeeeeccccccccceeeec----CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCC
Q psy11524         36 NHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTL----NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSP  111 (323)
Q Consensus        36 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~  111 (323)
                      ...+++||..+|.++.|+|        +++++.|++.++|...    .|...|.++++++++ .+++++.++ .+++|+.
T Consensus         5 ~i~~l~gH~~~I~~l~~s~--------l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~-~~~s~s~D~-~v~~w~~   74 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP--------LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ-EYSSISWDD-TLKVNGI   74 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT--------TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTT-CCEEEETTT-EEEETTE
T ss_pred             eeEEECCCCCceEEEEECc--------EEEEeCCCeEEEEECCCCCCCCCCCEEEEEecCCC-eEEEEeecc-ccccccc
Confidence            4568899999999999987        5667777777766433    488999999999765 467777774 9999986


Q ss_pred             CCceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeC-C-e
Q psy11524        112 NNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-N-T  188 (323)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~-~  188 (323)
                      ...     .....+..+.+++++..++++. ++.+.   +|+.. ++....+.. ..+  ..+++|++..+++++. + .
T Consensus        75 ~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~v~~~~~~~  142 (287)
T d1pgua2          75 TKH-----EFGSQPKVASANNDGFTAVLTN-DDDLL---ILQSFTGDIIKSVRL-NSP--GSAVSLSQNYVAVGLEEGNT  142 (287)
T ss_dssp             EEE-----ECSSCEEEEEECSSSEEEEEET-TSEEE---EEETTTCCEEEEEEC-SSC--EEEEEECSSEEEEEETTTSC
T ss_pred             ccc-----ccccceeeeeeccCCceEEEee-cccce---eeeccceeeeeeccc-cce--eeeeeccCcceeeeccccce
Confidence            432     2445677889999888777765 44566   77775 555555443 333  3466778888888887 4 7


Q ss_pred             EEEEeCCCCe--eeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCC---
Q psy11524        189 LRLCDKVGWS--HSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGS---  262 (323)
Q Consensus       189 i~i~d~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~---  262 (323)
                      +++|++....  ......+...+.+++|+|++++|++++.|+ |++||+.+++..... +..|...|.+++|+|.+.   
T Consensus       143 v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~~~  221 (287)
T d1pgua2         143 IQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR-WAFRTSKINAISWKPAEKGAN  221 (287)
T ss_dssp             EEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC-SCCCSSCEEEEEECCCC----
T ss_pred             eeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccc-ccccccccceeeecccccccc
Confidence            9999987442  223445778899999999999999999999 999999988765532 678899999999999765   


Q ss_pred             ---CccceEEEEeCCCCeEEEecccc-----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        263 ---LQERHVAFIDKNRDLYLSMWSHS-----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       263 ---~~d~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                         ....+++.++.|+.+++|++...     ....|...|++++|+|++ .|++++.||.|++|+++
T Consensus       222 ~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i~  287 (287)
T d1pgua2         222 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNVV  287 (287)
T ss_dssp             --CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEEC
T ss_pred             cccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEEC
Confidence               34467888999999999998663     456789999999999987 58999999999999984

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.3e-30  Score=211.64  Aligned_cols=238  Identities=13%  Similarity=0.138  Sum_probs=198.1

Q ss_pred             ceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEee
Q psy11524         73 SLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKAS  149 (323)
Q Consensus        73 ~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i  149 (323)
                      +..++|. |.+.|++++|+|++++||+|+.| +.|++||....  ...+..|...|.+++|+|+++++++++.|+.+.  
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~D-g~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~--  122 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQD-GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS--  122 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETT-TEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEE--
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECC-CceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceee--
Confidence            4445564 99999999999999999999877 69999998765  667889999999999999999999999999999  


Q ss_pred             eEEeCC-----CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEE
Q psy11524        150 FVWDTD-----GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIA  222 (323)
Q Consensus       150 ~v~d~~-----~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~  222 (323)
                       +|+..     ......+..+..........+ +..+.....+ ....++.... .......+...+....+.+.+.+++
T Consensus       123 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (340)
T d1tbga_         123 -IYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             -EEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             -cccccccccccccceeccccccccccccccc-ccccccccccccccccccccccccccccccceeEeeeccccccceeE
Confidence             99973     234445566666666555554 4455566665 7778876644 4445555777899999999999999


Q ss_pred             EEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc------cCCCCcccee
Q psy11524        223 GACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS------LDKPDTGSVY  295 (323)
Q Consensus       223 ~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~------~~~~~~~~v~  295 (323)
                      +++.|+ |++||+++++++.+  +.+|...|.+++|+|++    ..+++++.++.+.+|++...      ....+...|.
T Consensus       201 ~~~~d~~v~i~d~~~~~~~~~--~~~h~~~i~~v~~~p~~----~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~  274 (340)
T d1tbga_         201 SGACDASAKLWDVREGMCRQT--FTGHESDINAICFFPNG----NAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT  274 (340)
T ss_dssp             EEETTTEEEEEETTTTEEEEE--ECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred             EeecCceEEEEECCCCcEEEE--EeCCCCCeEEEEECCCC----CEEEEEeCCCeEEEEeecccccccccccccccCceE
Confidence            999999 99999999999988  78899999999999998    88999999999999998764      2334567899


Q ss_pred             EEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        296 DLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       296 ~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +++|+|++++|++|+.||.|++|++.
T Consensus       275 ~~~~s~~~~~l~~g~~dg~i~iwd~~  300 (340)
T d1tbga_         275 SVSFSKSGRLLLAGYDDFNCNVWDAL  300 (340)
T ss_dssp             EEEECSSSCEEEEEETTSCEEEEETT
T ss_pred             EEEECCCCCEEEEEECCCEEEEEECC
Confidence            99999999999999999999999974

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=6.8e-32  Score=225.11  Aligned_cols=271  Identities=9%  Similarity=0.015  Sum_probs=196.1

Q ss_pred             eeEecc-CCcceeeeeecc--ccccccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCe-EEEEeCCCCc-eeEeeccCC
Q psy11524         49 NYPISP-YISVLHSYAASH--SWPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSL-VIKPLSPNNK-ATKWQAHDG  123 (323)
Q Consensus        49 ~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~-~v~~~~~~~~-~~~~~~~~~  123 (323)
                      .-.||| ||+.++......  .|+........+.|...|.+++|+|||++|++++.+++ .|++|+..++ ...+..|..
T Consensus         7 ~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~   86 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLG   86 (360)
T ss_dssp             EEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCC
T ss_pred             cccccCCCCCEEEEEECCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCc
Confidence            467999 898776433222  36655555555689999999999999999998887654 6899998776 677889999


Q ss_pred             CeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEe----------CC-eEEE
Q psy11524        124 LILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGS----------YN-TLRL  191 (323)
Q Consensus       124 ~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~----------~~-~i~i  191 (323)
                      .+.+++|+|||++|++++.++.+.   +|+++ ++....+..+...+.+++|+|||++|+.+.          .+ .+++
T Consensus        87 ~v~~~~~spdg~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v  163 (360)
T d1k32a3          87 NVFAMGVDRNGKFAVVANDRFEIM---TVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV  163 (360)
T ss_dssp             SEEEEEECTTSSEEEEEETTSEEE---EEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred             eEEeeeecccccccceeccccccc---cccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceee
Confidence            999999999999999999999999   99996 555666777888999999999999998654          22 6899


Q ss_pred             EeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceee-------eecCC-----------------
Q psy11524        192 CDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSN-------VTAPL-----------------  246 (323)
Q Consensus       192 ~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~-------~~~~~-----------------  246 (323)
                      ||+.+........+...+..++|+|+|++|++++.++ +.+||........       ...+.                 
T Consensus       164 ~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  243 (360)
T d1k32a3         164 YDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSE  243 (360)
T ss_dssp             EETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCC
T ss_pred             eccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCccc
Confidence            9999877777777888899999999999999999999 9999864432110       00000                 


Q ss_pred             -----------------CCccceEEEEEccCCC---------CccceEEEEeCCCCeEEEecccccCCCCccceeEEEEe
Q psy11524        247 -----------------SHSHEITQLAVNQTGS---------LQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWS  300 (323)
Q Consensus       247 -----------------~~~~~v~~~~~~p~g~---------~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  300 (323)
                                       ...+....+...+++.         .....++..+.++.+.+|++.......|.+.|.+++||
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~~~~S  323 (360)
T d1k32a3         244 AGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLS  323 (360)
T ss_dssp             CCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEEC
T ss_pred             ccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEecCCcCEEEEC
Confidence                             0001111222222110         00000011112334555665543333346789999999


Q ss_pred             eCCCeeEeeecCCeEEEEEeec
Q psy11524        301 SDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       301 ~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      |||++|++++.||.|++|++..
T Consensus       324 pDG~~l~~~~~Dg~i~v~d~~~  345 (360)
T d1k32a3         324 ADRKTVMVRKDDGKIYTFPLEK  345 (360)
T ss_dssp             TTSCEEEEEETTSCEEEEESSC
T ss_pred             CCCCEEEEEECCCeEEEEECCC
Confidence            9999999999999999999853

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=5.6e-30  Score=211.15  Aligned_cols=236  Identities=12%  Similarity=0.138  Sum_probs=187.8

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc----eeEeeccC-CCeEEEEECC--CCCEEEEEcCCCceEeeeEEe
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK----ATKWQAHD-GLILKVAWCS--STDLILSGGEDCKYKASFVWD  153 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~-~~v~~~~~~~--~~~~l~~~~~d~~i~~i~v~d  153 (323)
                      ...+++++|+|+|+.|++++.+...++.|+....    ...+.+|. ..|++++|+|  ++.+|++|+.||+|+   +||
T Consensus        17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~---iWd   93 (325)
T d1pgua1          17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI---VWG   93 (325)
T ss_dssp             TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE---EEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEE---Eee
Confidence            3456889999999999998777667888876543    55677774 6799999998  568999999999999   999


Q ss_pred             CC-CC--------eeeEeecCCCceeEEEEecCCCEEEEEeC--C-eEEEEeCC-CCeeeecCCCCccEEEEEEcCCCCE
Q psy11524        154 TD-GR--------QLYSSLTHDHPISSLAWAPGGDMFAVGSY--N-TLRLCDKV-GWSHSLDKPDTGSVYDLVWSNDATQ  220 (323)
Q Consensus       154 ~~-~~--------~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--~-~i~i~d~~-~~~~~~~~~~~~~v~~~~~~~~~~~  220 (323)
                      +. ++        ....+..+.++|.+++|+|+++++++++.  + .+.+|+.. +.....+.+|...+.+++|+|++.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  173 (325)
T d1pgua1          94 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM  173 (325)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSC
T ss_pred             ecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccc
Confidence            83 11        11234567889999999999999888775  3 79999976 4566778889999999999998875


Q ss_pred             -EEEEecCc-EEEEEcCCCceeeee-cCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccc
Q psy11524        221 -IAGACANV-IHIFDISSSSSSNVT-APLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGS  293 (323)
Q Consensus       221 -l~~~~~d~-i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~  293 (323)
                       +++++.|+ +++||.+.++..... ....+...|.+++|+|++.   ..++++..++.+.+|+....    ....|...
T Consensus       174 ~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~---~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~  250 (325)
T d1pgua1         174 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG---EFVITVGSDRKISCFDGKSGEFLKYIEDDQEP  250 (325)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTC---CEEEEEETTCCEEEEETTTCCEEEECCBTTBC
T ss_pred             eEEEeecccccccccccccccceecccccCCCCccEEeeeccccc---eeccccccccceeeeeeccccccccccccccc
Confidence             67788999 999999887765542 1346778899999999752   67888889999999988765    44556666


Q ss_pred             eeEEEEe---eCCCeeEeeecCCeEEEEEeec
Q psy11524        294 VYDLVWS---SDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       294 v~~~~~s---~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                      +.++.|+   |+|++|++++.|+.|+||++.+
T Consensus       251 v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~  282 (325)
T d1pgua1         251 VQGGIFALSWLDSQKFATVGADATIRVWDVTT  282 (325)
T ss_dssp             CCSCEEEEEESSSSEEEEEETTSEEEEEETTT
T ss_pred             cccceeeeeccCCCEEEEEeCCCeEEEEECCC
Confidence            6666665   6899999999999999999754

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.9e-29  Score=207.23  Aligned_cols=271  Identities=11%  Similarity=0.125  Sum_probs=194.7

Q ss_pred             eeeeEeecccceeEeeEeccCCcceeeeeecc---ccc-cccceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEe
Q psy11524         35 KNHLTIRRYDGTVINYPISPYISVLHSYAASH---SWP-QALSLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPL  109 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~  109 (323)
                      ....+++||.+.|.++ ++++++.+++...++   .|| .+.++.+++. |.++|++++|+|+ .+|++++.| +.|++|
T Consensus         3 p~~~tL~GH~~~vitc-~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D-~~i~iw   79 (355)
T d1nexb2           3 PQRTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTD-RTVRVW   79 (355)
T ss_dssp             CEEEEEECCSSSCEEE-EEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETT-CCEEEE
T ss_pred             CCcEEECCcCCCcEEE-EEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecc-cccccc
Confidence            3456799999887432 445664444333333   244 2334444454 8999999999986 578888776 699999


Q ss_pred             CCCCce--eEee--ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCee-e-----------------------E
Q psy11524        110 SPNNKA--TKWQ--AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQL-Y-----------------------S  161 (323)
Q Consensus       110 ~~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~-~-----------------------~  161 (323)
                      +.....  ....  .+........+.+++..+++++.|+.|+   +||+..... .                       .
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~---iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
T d1nexb2          80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH---VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  156 (355)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEE---EEECCC-----------CCCEEESCTTTCTTEEEE
T ss_pred             cccccccccccccccccccccccccccccceeeeecCCCcEE---EEEccCCceeccccccceeccceeccccccceeee
Confidence            987762  2222  2333455677788999999999999999   999853211 1                       1


Q ss_pred             eecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCc
Q psy11524        162 SLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSS  238 (323)
Q Consensus       162 ~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~  238 (323)
                      ...+...+  ..+.+++++++++..+ .+++||++.. .......+...+.++.++|++.++++++.|+ |++||.+++.
T Consensus       157 ~~~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  234 (355)
T d1nexb2         157 LRGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE  234 (355)
T ss_dssp             EECCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC
T ss_pred             eeeccccc--cccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccc
Confidence            11122222  3455678899999987 9999998754 4556667888899999999999999999999 9999999999


Q ss_pred             eeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc--cCCCCccceeEE-EEeeCCCeeEeeecCCeE
Q psy11524        239 SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS--LDKPDTGSVYDL-VWSSDATQIAGACANGSL  315 (323)
Q Consensus       239 ~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~-~~s~~g~~l~s~~~dg~i  315 (323)
                      .+..  +.+|...|.+++|++      +.++++..++.+++|++...  ....|...+.++ .+++++++|++| .||.|
T Consensus       235 ~~~~--~~~h~~~v~~~~~~~------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i  305 (355)
T d1nexb2         235 LMYT--LQGHTALVGLLRLSD------KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQF  305 (355)
T ss_dssp             EEEE--ECCCSSCCCEEEECS------SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEE-ETTEE
T ss_pred             cccc--ccccccccccccccc------ceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEE-eCCEE
Confidence            9888  789999999999975      57888888888999988765  233345555555 456676665555 58999


Q ss_pred             EEEEeec
Q psy11524        316 LLGTIIQ  322 (323)
Q Consensus       316 ~~~~l~~  322 (323)
                      ++|++.+
T Consensus       306 ~vwd~~t  312 (355)
T d1nexb2         306 NIYNLRS  312 (355)
T ss_dssp             EEEETTT
T ss_pred             EEEECCC
Confidence            9999753

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4e-27  Score=193.95  Aligned_cols=270  Identities=17%  Similarity=0.167  Sum_probs=191.1

Q ss_pred             eeeeEeecccceeEeeEeccCCcceeeeeecc---ccc-cccceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEe
Q psy11524         35 KNHLTIRRYDGTVINYPISPYISVLHSYAASH---SWP-QALSLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPL  109 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~  109 (323)
                      +....++||.+.|.+ .++++|+.+++...++   .|| .+.++.+++. |...|.+++|+|+  +|++++.+ +.+++|
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D-~~~~~~   82 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTD-RTLKVW   82 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETT-SCEEEE
T ss_pred             CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceec-cccccc
Confidence            445678999999876 4777885544443333   244 2334444453 8999999999975  78888766 588888


Q ss_pred             CCCCceeE--eeccCCCe--------------------------------------EEEEECCCCCEEEEEcCCCceEee
Q psy11524        110 SPNNKATK--WQAHDGLI--------------------------------------LKVAWCSSTDLILSGGEDCKYKAS  149 (323)
Q Consensus       110 ~~~~~~~~--~~~~~~~v--------------------------------------~~~~~~~~~~~l~~~~~d~~i~~i  149 (323)
                      +.......  ...+...+                                      ....+.+....+++++.|+.++  
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~--  160 (342)
T d2ovrb2          83 NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK--  160 (342)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEE--
T ss_pred             ccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEE--
Confidence            86543111  11111100                                      1112233455778888999999  


Q ss_pred             eEEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCC-CeeeecCCCCccEEEEEEcCCCCEEEEEec
Q psy11524        150 FVWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQIAGACA  226 (323)
Q Consensus       150 ~v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  226 (323)
                       +||.. ...+..+..|...+..  +++++.++++++.| .|++||++. ..+.....|...+.++++++  ++|++++.
T Consensus       161 -~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~  235 (342)
T d2ovrb2         161 -VWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNA  235 (342)
T ss_dssp             -EEEGGGTEEEEEECCCSSCEEE--EEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEET
T ss_pred             -EeecccceeeEEEcCccccccc--ccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcC
Confidence             99986 5566667777666554  45578899999996 999999874 46667778888898888765  59999999


Q ss_pred             Cc-EEEEEcCCCceeeeec-CCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc---------cCCCCcccee
Q psy11524        227 NV-IHIFDISSSSSSNVTA-PLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---------LDKPDTGSVY  295 (323)
Q Consensus       227 d~-i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~v~  295 (323)
                      |+ |++||....+....+. ...|...+.++.+++      ..+++++.++.+++|++..+         ....|...|+
T Consensus       236 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~  309 (342)
T d2ovrb2         236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK------NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW  309 (342)
T ss_dssp             TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS------SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEE
T ss_pred             CCEEEEEecccccccccccccceeeeceeecccCC------CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEE
Confidence            99 9999999888766531 234566777777765      46777777888888887654         1234677899


Q ss_pred             EEEEeeCCCeeEeeecCCe----EEEEEee
Q psy11524        296 DLVWSSDATQIAGACANGS----LLLGTII  321 (323)
Q Consensus       296 ~~~~s~~g~~l~s~~~dg~----i~~~~l~  321 (323)
                      +++|+|++.+|++|+.||+    |++||+-
T Consensus       310 ~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         310 RIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             EEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            9999999999999999985    9999873

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.5e-26  Score=190.13  Aligned_cols=263  Identities=14%  Similarity=0.109  Sum_probs=197.1

Q ss_pred             eeeeEeecccceeEeeEeccCCcceeeeeeccccccccceeeecC-----------CCCCEEEEEEcCCCCeEEEEeeCC
Q psy11524         35 KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLN-----------VSPPVYSAAWSPDSNKVLLTQAKS  103 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~sp~~~~l~~~~~~~  103 (323)
                      +...++++|.+.|.+++|+|++     .+++++.|++.++|....           +........++++++++++++.+ 
T Consensus        44 ~~~~~l~~H~~~V~~l~~s~~~-----~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-  117 (355)
T d1nexb2          44 KFLLQLSGHDGGVWALKYAHGG-----ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD-  117 (355)
T ss_dssp             EEEEEEECCSSCEEEEEEETTT-----EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETT-
T ss_pred             cEEEEEECCCCCEEEEEEcCCC-----EEEEEecccccccccccccccccccccccccccccccccccccceeeeecCC-
Confidence            4456789999999999999965     345566666655543221           33445667788999999988777 


Q ss_pred             eEEEEeCCCCcee-------------------------EeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CC
Q psy11524        104 LVIKPLSPNNKAT-------------------------KWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GR  157 (323)
Q Consensus       104 ~~v~~~~~~~~~~-------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~  157 (323)
                      +.+++|+......                         ....|...+.  .+.+++++++++..|+.++   +||+. ++
T Consensus       118 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~---~~d~~~~~  192 (355)
T d1nexb2         118 NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLI---VWDVAQMK  192 (355)
T ss_dssp             SEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSCEE---EEETTTTE
T ss_pred             CcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc--ccccccceeeeecccceee---eeeccccc
Confidence            5999998764310                         1112233333  3456788999999999999   99996 56


Q ss_pred             eeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCC-CeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEc
Q psy11524        158 QLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDI  234 (323)
Q Consensus       158 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~  234 (323)
                      .+.....+...+.++.|+|++..+++++.+ .|++||++. .....+.+|...|.++++++  ++|++++.|+ |++||+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~  270 (355)
T d1nexb2         193 CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDA  270 (355)
T ss_dssp             EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEET
T ss_pred             ceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeeecccccccccc
Confidence            667777788899999999999999999996 999999874 46667888999999999975  6899999999 999999


Q ss_pred             CCCceeeeecCCCCccceEEE-EEccCCCCccceEEEEeCCCCeEEEecccc-----cCCCCccceeEEEEeeCCCeeEe
Q psy11524        235 SSSSSSNVTAPLSHSHEITQL-AVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----LDKPDTGSVYDLVWSSDATQIAG  308 (323)
Q Consensus       235 ~~~~~~~~~~~~~~~~~v~~~-~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g~~l~s  308 (323)
                      +++.....    .|...+..+ .+++++    ..+..+ .++.+++|+++++     ....|...|.+++|+|+ ..+++
T Consensus       271 ~~~~~~~~----~~~~~~~~~~~~~~~~----~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~  340 (355)
T d1nexb2         271 NDYSRKFS----YHHTNLSAITTFYVSD----NILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAA  340 (355)
T ss_dssp             TTCCEEEE----EECTTCCCCCEEEECS----SEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEE
T ss_pred             cccceecc----cccCCceEEEEEcCCC----CEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEE
Confidence            98765543    344445544 456665    555544 5788999998765     34567899999999987 47888


Q ss_pred             eecCCeEEEEEe
Q psy11524        309 ACANGSLLLGTI  320 (323)
Q Consensus       309 ~~~dg~i~~~~l  320 (323)
                      ++.||.++||.+
T Consensus       341 ~s~dg~~~l~~~  352 (355)
T d1nexb2         341 VEKDGQSFLEIL  352 (355)
T ss_dssp             EESSSCEEEEEE
T ss_pred             EECCCcEEEEEE
Confidence            999999877754

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.7e-27  Score=192.76  Aligned_cols=243  Identities=10%  Similarity=0.049  Sum_probs=175.2

Q ss_pred             ceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-----eeEeeccCCCeEEEEECCC-CCEEEEEcCCCc
Q psy11524         73 SLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-----ATKWQAHDGLILKVAWCSS-TDLILSGGEDCK  145 (323)
Q Consensus        73 ~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~  145 (323)
                      ++.+..+ |.+.|++|+|+|++++||+++.| +.|++|+....     ......|..+|.+++|+|+ +.+|++|+.|+.
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~D-g~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~   80 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWD-GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETT-SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECC-CeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence            3444444 89999999999999999999877 59999987543     3334579999999999986 458999999999


Q ss_pred             eEeeeEEeCCC-CeeeEeecCC-CceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-----eeeecCC--CCccEEEEEEc
Q psy11524        146 YKASFVWDTDG-RQLYSSLTHD-HPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-----SHSLDKP--DTGSVYDLVWS  215 (323)
Q Consensus       146 i~~i~v~d~~~-~~~~~~~~~~-~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-----~~~~~~~--~~~~v~~~~~~  215 (323)
                      |+   +|++.. ........+. .......+.+++..+++++.+ .+++||++..     .......  .........+.
T Consensus        81 v~---~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (342)
T d1yfqa_          81 IL---KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD  157 (342)
T ss_dssp             EE---EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred             ee---eeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeee
Confidence            99   999963 3333333333 334455566788889998886 9999997521     1111211  22345566778


Q ss_pred             CCCCEEEEEecCc-EEEEEcCCCceeeee-cCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc--------
Q psy11524        216 NDATQIAGACANV-IHIFDISSSSSSNVT-APLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS--------  285 (323)
Q Consensus       216 ~~~~~l~~~~~d~-i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~--------  285 (323)
                      +++..+++++.|+ |++||++..+..... .............+.|..   ...+.++..++.+.+|.+...        
T Consensus       158 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~~v~~~~~~~~~~~~~~  234 (342)
T d1yfqa_         158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE---QEGYACSSIDGRVAVEFFDDQGDDYNSSK  234 (342)
T ss_dssp             ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG---GCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred             ccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCC---CCEEEeecCCCeEEEEEecCCcceeeccc
Confidence            8888999999999 999999876543321 023344456666665543   167777888888888776542        


Q ss_pred             -----------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEeec
Q psy11524        286 -----------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQ  322 (323)
Q Consensus       286 -----------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~~  322 (323)
                                 ....|...+++++|+|++++|++|+.||.|++|++..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~  282 (342)
T d1yfqa_         235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             cceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCC
Confidence                       1223556789999999999999999999999999754

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.3e-27  Score=200.48  Aligned_cols=272  Identities=13%  Similarity=0.109  Sum_probs=187.4

Q ss_pred             eeeeeEeecccceeEeeEeccCCcceeeeeeccccccccceeeec---------------CCCCCEEEEEE------cC-
Q psy11524         34 VKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTL---------------NVSPPVYSAAW------SP-   91 (323)
Q Consensus        34 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~v~~~~~------sp-   91 (323)
                      +......++|++.|.++++++      .++++++.|++.++|...               .|...+..+..      ++ 
T Consensus         4 ~~~~~~~~~H~~~I~~v~~~~------~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (393)
T d1sq9a_           4 IATANAGKAHDADIFSVSACN------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAF   77 (393)
T ss_dssp             EEEEEESSCSSSCEEEEEECS------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTE
T ss_pred             EeeeecCCcccCccEEEEEeC------CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCC
Confidence            345566789999999999876      245566667777666421               13333333222      22 


Q ss_pred             CCCeEEEEeeCCeEEEEeCCCCc-----ee--E-----eeccCCCeEEEEECCC-----CCEEEEEcCCCceEeeeEEeC
Q psy11524         92 DSNKVLLTQAKSLVIKPLSPNNK-----AT--K-----WQAHDGLILKVAWCSS-----TDLILSGGEDCKYKASFVWDT  154 (323)
Q Consensus        92 ~~~~l~~~~~~~~~v~~~~~~~~-----~~--~-----~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~~i~v~d~  154 (323)
                      ++..+++++.+ +.+++|+....     ..  .     ...+...+..++|.++     +.++++++.||+++   +|++
T Consensus        78 ~~~~~~s~~~d-g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~---vw~~  153 (393)
T d1sq9a_          78 ELCLVATTSFS-GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTY---IWKF  153 (393)
T ss_dssp             EEEEEEEEETT-SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEE---EEEE
T ss_pred             CCcEEEEEeCC-CcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEE---EEEe
Confidence            22345556555 68888875322     11  1     1234566788888775     46889999999999   9997


Q ss_pred             CCC------------e-------eeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCe-ee------ecCCCCc
Q psy11524        155 DGR------------Q-------LYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWS-HS------LDKPDTG  207 (323)
Q Consensus       155 ~~~------------~-------~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~-~~------~~~~~~~  207 (323)
                      ...            .       ......+...+.+++|+|++ +|++|+.| +|++||+.... +.      .+.+|..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~  232 (393)
T d1sq9a_         154 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN  232 (393)
T ss_dssp             ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred             ecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccc
Confidence            210            0       01112344568899999998 88899887 99999987542 22      3456889


Q ss_pred             cEEEEEEcCCCCEEEEEecCc----EEEEEcCCCceeeeec-----------CCCCccceEEEEEccCCCCccceEEEEe
Q psy11524        208 SVYDLVWSNDATQIAGACANV----IHIFDISSSSSSNVTA-----------PLSHSHEITQLAVNQTGSLQERHVAFID  272 (323)
Q Consensus       208 ~v~~~~~~~~~~~l~~~~~d~----i~iwd~~~~~~~~~~~-----------~~~~~~~v~~~~~~p~g~~~d~~l~~~~  272 (323)
                      .|.+++|+|+|++|++++.|+    |++||+++++.+..+.           +.+|...|++++|+|++    ..|+.++
T Consensus       233 ~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~----~~l~S~s  308 (393)
T d1sq9a_         233 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG----ETLCSAG  308 (393)
T ss_dssp             CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS----SEEEEEE
T ss_pred             eEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCC----CeeEEEC
Confidence            999999999999999999874    8999999998777632           23688999999999999    7777888


Q ss_pred             CCCCeEEEecccc----cCCCCc---------------------cceeEEEEeeCC----------CeeEeeecCCeEEE
Q psy11524        273 KNRDLYLSMWSHS----LDKPDT---------------------GSVYDLVWSSDA----------TQIAGACANGSLLL  317 (323)
Q Consensus       273 ~~~~~~~~~~~~~----~~~~~~---------------------~~v~~~~~s~~g----------~~l~s~~~dg~i~~  317 (323)
                      .|+.+++|++..+    .+++|.                     ..+.++.|.+.+          +.|++++.|+.|++
T Consensus       309 ~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~  388 (393)
T d1sq9a_         309 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW  388 (393)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred             CCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEE
Confidence            8888888877654    223333                     345667776643          34788888999999


Q ss_pred             EEe
Q psy11524        318 GTI  320 (323)
Q Consensus       318 ~~l  320 (323)
                      |+-
T Consensus       389 ~~~  391 (393)
T d1sq9a_         389 FRE  391 (393)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            874

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-25  Score=181.24  Aligned_cols=263  Identities=11%  Similarity=0.111  Sum_probs=191.8

Q ss_pred             eeeeEeecccceeEeeEeccCCcceeeeeecc---ccc-cccceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEe
Q psy11524         35 KNHLTIRRYDGTVINYPISPYISVLHSYAASH---SWP-QALSLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPL  109 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~  109 (323)
                      +.......|...|.++.  ++++.+++...++   .|| .+.++.+++. |...|++++|  ++++|++++.+ +.+++|
T Consensus         6 ~~i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D-~~i~~~   80 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSD-STVRVW   80 (293)
T ss_dssp             CCEECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETT-SCEEEE
T ss_pred             EEEeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccc-cccccc
Confidence            33445567888898865  4675444443333   244 2334444554 8999999887  57789988777 599999


Q ss_pred             CCCCceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCC----eeeEeecCCCceeEEEEecCCCEEEEEe
Q psy11524        110 SPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGR----QLYSSLTHDHPISSLAWAPGGDMFAVGS  185 (323)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~----~~~~~~~~~~~v~~~~~~p~~~~l~~~~  185 (323)
                      +...................+.+....++++..++.+.   +|+....    ....+..+...+..+.+.  ...+++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s  155 (293)
T d1p22a2          81 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA---VWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSAS  155 (293)
T ss_dssp             ESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEE---EEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEE
T ss_pred             ccccccccccccccccccccccccccceeeccccccee---Eeeccccccccccccccccccccccceec--cccccccc
Confidence            98776333222222223344555667889999999999   9998532    234456677788777776  45677777


Q ss_pred             CC-eEEEEeCCC-CeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCC
Q psy11524        186 YN-TLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGS  262 (323)
Q Consensus       186 ~~-~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~  262 (323)
                      .| .+++||.+. .....+.++...+..+.++  +.++++++.|+ |++||+++.+.+..  ...+...+..+  ++++ 
T Consensus       156 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~v~~~--~~~~-  228 (293)
T d1p22a2         156 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRV--LEGHEELVRCI--RFDN-  228 (293)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEE--ECCS-
T ss_pred             CCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeee--ecccceeeeec--cccc-
Confidence            76 999999875 4555667777888887776  45899999999 99999999998887  67777777654  4555 


Q ss_pred             CccceEEEEeCCCCeEEEecccc-------------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        263 LQERHVAFIDKNRDLYLSMWSHS-------------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       263 ~~d~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                         ..++++..++.+.+|++...             ....|.+.|++++|  ++++|++++.||+|++||
T Consensus       229 ---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         229 ---KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             ---SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             ---eEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence               78999999999999987542             34568889999998  567899999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.1e-26  Score=193.51  Aligned_cols=232  Identities=11%  Similarity=0.076  Sum_probs=166.8

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--------eeEeeccCCCeEEEEE------CC-CCCEEEEEcCC
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--------ATKWQAHDGLILKVAW------CS-STDLILSGGED  143 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--------~~~~~~~~~~v~~~~~------~~-~~~~l~~~~~d  143 (323)
                      .|...|.++++++  +++++++.| +.|++|+....        ......|...+..+..      ++ ++.++++++.|
T Consensus        12 ~H~~~I~~v~~~~--~~l~S~S~D-~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d   88 (393)
T d1sq9a_          12 AHDADIFSVSACN--SFTVSCSGD-GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS   88 (393)
T ss_dssp             CSSSCEEEEEECS--SEEEEEETT-SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred             cccCccEEEEEeC--CEEEEEECC-CeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCC
Confidence            4999999999875  689998887 59999985432        2223345444333222      11 23578899999


Q ss_pred             CceEeeeEEeCC-C---CeeeE--e-----ecCCCceeEEEEecC-----CCEEEEEeCC-eEEEEeCCCC---------
Q psy11524        144 CKYKASFVWDTD-G---RQLYS--S-----LTHDHPISSLAWAPG-----GDMFAVGSYN-TLRLCDKVGW---------  197 (323)
Q Consensus       144 ~~i~~i~v~d~~-~---~~~~~--~-----~~~~~~v~~~~~~p~-----~~~l~~~~~~-~i~i~d~~~~---------  197 (323)
                      |.|+   +|++. .   .....  .     ..+...+..++|.++     +.++++++.| .+++||+...         
T Consensus        89 g~v~---~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          89 GDLL---FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             SCEE---EEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             CcEE---EEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            9999   99973 1   11111  1     123456778888875     4567888876 9999996321         


Q ss_pred             ----------eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeec----CCCCccceEEEEEccCCC
Q psy11524        198 ----------SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTA----PLSHSHEITQLAVNQTGS  262 (323)
Q Consensus       198 ----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~----~~~~~~~v~~~~~~p~g~  262 (323)
                                .......+...+.+++|+|++ +|++|+.|+ |++||+.+++++..+.    +.+|..+|.+++|+|+| 
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg-  243 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG-  243 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST-
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccc-
Confidence                      011222345568899999998 899999999 9999999988766432    35688999999999999 


Q ss_pred             CccceEEEEeCCCC---eEEEecccc-----------------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        263 LQERHVAFIDKNRD---LYLSMWSHS-----------------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       263 ~~d~~l~~~~~~~~---~~~~~~~~~-----------------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                         ..|+++..|+.   +++|++...                 ...+|...|++++|+|||++|++++.|++|++|++.
T Consensus       244 ---~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~  319 (393)
T d1sq9a_         244 ---SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK  319 (393)
T ss_dssp             ---TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             ---ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECC
Confidence               67777766553   667776542                 334689999999999999999999999999999974

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.3e-26  Score=188.17  Aligned_cols=273  Identities=7%  Similarity=0.007  Sum_probs=191.6

Q ss_pred             eeeEeecccceeEeeEeccCCcceeeeeeccccccccceee------------ecCCCCCEEEEEEcCCCC-eEEEEeeC
Q psy11524         36 NHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCR------------TLNVSPPVYSAAWSPDSN-KVLLTQAK  102 (323)
Q Consensus        36 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~v~~~~~sp~~~-~l~~~~~~  102 (323)
                      ..+..++|++.|.+++|+|++.    +++++++|++.++|.            .+.|..+|.+++|+|++. +|++|+.+
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~----~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d   78 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKS----LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ   78 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGT----EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT
T ss_pred             eEEcCCCCCCCEEEEEEeCCCC----EEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc
Confidence            3456789999999999999994    555666666665553            234899999999999765 56666555


Q ss_pred             CeEEEEeCCCCc--eeEeec-cCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC-CC----eeeEeec--CCCceeEE
Q psy11524        103 SLVIKPLSPNNK--ATKWQA-HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD-GR----QLYSSLT--HDHPISSL  172 (323)
Q Consensus       103 ~~~v~~~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~-~~----~~~~~~~--~~~~v~~~  172 (323)
                       +.+++|+....  ...... +........+.+++..+++++.++.++   +||++ ..    .......  .......+
T Consensus        79 -~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (342)
T d1yfqa_          79 -GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE---VIDPRNYGDGVIAVKNLNSNNTKVKNKIF  154 (342)
T ss_dssp             -SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEE---EECHHHHTTBCEEEEESCSSSSSSCCCEE
T ss_pred             -cceeeeecccccccccccccccccccccccccccccccccccccccc---eeeccccccceeeecccccccccceeeee
Confidence             69999998765  223322 333445556677888999999999999   99983 11    1112222  22344566


Q ss_pred             EEecCCCEEEEEeCC-eEEEEeCCCC----eeeecCCCCccEEEEEEcC-CCCEEEEEecCc-EEEEEcCCCceeee---
Q psy11524        173 AWAPGGDMFAVGSYN-TLRLCDKVGW----SHSLDKPDTGSVYDLVWSN-DATQIAGACANV-IHIFDISSSSSSNV---  242 (323)
Q Consensus       173 ~~~p~~~~l~~~~~~-~i~i~d~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~---  242 (323)
                      .+.+++..+++++.+ .+++||++..    .............+..+.+ ++..+++++.|+ +.+|+.........   
T Consensus       155 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~  234 (342)
T d1yfqa_         155 TMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK  234 (342)
T ss_dssp             EEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred             eeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccc
Confidence            778888999999986 9999998643    2223334455566666655 677899999999 99998764322110   


Q ss_pred             ----------ecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc--cCCC-CccceeEEEEeeCCCeeEee
Q psy11524        243 ----------TAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS--LDKP-DTGSVYDLVWSSDATQIAGA  309 (323)
Q Consensus       243 ----------~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~--~~~~-~~~~v~~~~~s~~g~~l~s~  309 (323)
                                .....|...+++++|+|++    +.|++++.||.+++|++...  +... +...+..++|+|+|+.|+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~l~~sp~~----~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a  310 (342)
T d1yfqa_         235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRH----KFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLA  310 (342)
T ss_dssp             CEEEECCCCCTTCCSSCCCEEEEEECTTT----CCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEE
T ss_pred             cceeeeeeeccCCCcccccceeEEecCCc----cEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEE
Confidence                      0023466689999999999    88999999999999998765  1111 13455678889999999999


Q ss_pred             ecCCeEEEEEe
Q psy11524        310 CANGSLLLGTI  320 (323)
Q Consensus       310 ~~dg~i~~~~l  320 (323)
                      +.|+.+++|..
T Consensus       311 ~sdd~~~~~~~  321 (342)
T d1yfqa_         311 TSDDTFKTNAA  321 (342)
T ss_dssp             EECTHHHHCSS
T ss_pred             EcCCcEEEeee
Confidence            98887766543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.8e-25  Score=181.34  Aligned_cols=230  Identities=13%  Similarity=0.193  Sum_probs=169.8

Q ss_pred             ceeeec-CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEee
Q psy11524         73 SLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKAS  149 (323)
Q Consensus        73 ~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i  149 (323)
                      +..+.+ +|.+.|.+ +++++|++||+|+.| +.|++||....  +.++.+|.+.|.+++|+|+  +|++++.|+.++  
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~D-g~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~--   80 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDD-NTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLK--   80 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETT-SCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEE--
T ss_pred             CcCEEECCcCCceEE-EEEECCCEEEEEeCC-CeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccc--
Confidence            333444 48888865 477789999998877 69999998665  6778999999999999875  999999999999  


Q ss_pred             eEEeCCCCeeeEe-ecCCCce--------------------------------------eEEEEecCCCEEEEEeCC-eE
Q psy11524        150 FVWDTDGRQLYSS-LTHDHPI--------------------------------------SSLAWAPGGDMFAVGSYN-TL  189 (323)
Q Consensus       150 ~v~d~~~~~~~~~-~~~~~~v--------------------------------------~~~~~~p~~~~l~~~~~~-~i  189 (323)
                       +|+......... ......+                                      ....+.+....++.++.+ .+
T Consensus        81 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  159 (342)
T d2ovrb2          81 -VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV  159 (342)
T ss_dssp             -EEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCE
T ss_pred             -ccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeE
Confidence             999743222111 1111000                                      112233345567777775 89


Q ss_pred             EEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccce
Q psy11524        190 RLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERH  267 (323)
Q Consensus       190 ~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~  267 (323)
                      ++||.... ....+.+|...+...  ++++.++++++.|+ |++||++.++.+..  +..|...+.++++++      +.
T Consensus       160 ~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~------~~  229 (342)
T d2ovrb2         160 KVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHT--LTGHQSLTSGMELKD------NI  229 (342)
T ss_dssp             EEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEETTSCEEEEETTTCCEEEE--ECCCCSCEEEEEEET------TE
T ss_pred             EEeecccceeeEEEcCcccccccc--cCCCCEEEEEeCCCeEEEeecccceeeeE--ecccccceeEEecCC------CE
Confidence            99997744 445666676666554  44678999999999 99999999999888  688888998887765      57


Q ss_pred             EEEEeCCCCeEEEecccc-------cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        268 VAFIDKNRDLYLSMWSHS-------LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       268 l~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +++++.++.+++|+....       ....|...+.++++  +++++++|+.||.|++|++.
T Consensus       230 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         230 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETT
T ss_pred             EEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECC
Confidence            888999999999987664       22234566666666  56699999999999999974

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.1e-25  Score=181.83  Aligned_cols=224  Identities=12%  Similarity=0.034  Sum_probs=176.1

Q ss_pred             cceeeecC-CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeee
Q psy11524         72 LSLCRTLN-VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASF  150 (323)
Q Consensus        72 ~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~  150 (323)
                      .++.+++. |..+|++++|+|    |++|+.| +.|++|+..+.   ...|...|.+++++++ ..+++++.|++++   
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~D-g~v~~Wd~~~~---~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~---   70 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYD-GRIMEWSSSSM---HQDHSNLIVSLDNSKA-QEYSSISWDDTLK---   70 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETT-SCEEETTTTEE---ECCCCSCEEEEECCST-TCCEEEETTTEEE---
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeCC-CeEEEEECCCC---CCCCCCCEEEEEecCC-CeEEEEeeccccc---
Confidence            34556665 999999999998    7888776 69999998653   4679999999999875 4678999999999   


Q ss_pred             EEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCc-
Q psy11524        151 VWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANV-  228 (323)
Q Consensus       151 v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-  228 (323)
                      +|++...      .....+..+++++++..++++..+.+.+|+.... ...... ....+  .+++|++..+++++.++ 
T Consensus        71 ~w~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~v~~~~~~  141 (287)
T d1pgua2          71 VNGITKH------EFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPG--SAVSLSQNYVAVGLEEGN  141 (287)
T ss_dssp             ETTEEEE------ECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCE--EEEEECSSEEEEEETTTS
T ss_pred             ccccccc------ccccceeeeeeccCCceEEEeecccceeeeccceeeeeecc-cccee--eeeeccCcceeeeccccc
Confidence            9997532      1334577889999988888777678888887644 343333 33333  45677788888888775 


Q ss_pred             -EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-----cCCCCccceeEEEEeeC
Q psy11524        229 -IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-----LDKPDTGSVYDLVWSSD  302 (323)
Q Consensus       229 -i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~  302 (323)
                       +++|++...+..... ...+...+++++|+|++    .++++++.++.+++|++...     ....|...|.+++|+|+
T Consensus       142 ~v~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~----~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~  216 (287)
T d1pgua2         142 TIQVFKLSDLEVSFDL-KTPLRAKPSYISISPSE----TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPA  216 (287)
T ss_dssp             CEEEEETTEEEEEEEC-SSCCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCC
T ss_pred             eeeeeeccccceeeee-eeccCCceeEEEeccCc----cccccccccccccceeecccccccccccccccccceeeeccc
Confidence             999998876655542 34577889999999999    89999999999999998765     45678999999999875


Q ss_pred             ----------CCeeEeeecCCeEEEEEee
Q psy11524        303 ----------ATQIAGACANGSLLLGTII  321 (323)
Q Consensus       303 ----------g~~l~s~~~dg~i~~~~l~  321 (323)
                                +.+|++|+.|+.|++|++.
T Consensus       217 ~~~~~~~~~~~~~l~sgs~D~~i~iw~~~  245 (287)
T d1pgua2         217 EKGANEEEIEEDLVATGSLDTNIFIYSVK  245 (287)
T ss_dssp             C------CCSCCEEEEEETTSCEEEEESS
T ss_pred             ccccccccCCCCeeEeecCCCeEEEEECC
Confidence                      4689999999999999974

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.8e-23  Score=165.03  Aligned_cols=221  Identities=17%  Similarity=0.218  Sum_probs=171.3

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG  156 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~  156 (323)
                      +|...|+|++|  +|++||+|+.| +.|++||....  ...+.+|.+.|.+++|  ++++|++++.|+.|+   +|++..
T Consensus        13 ~~~~~V~c~~~--d~~~l~sgs~D-g~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~---~~~~~~   84 (293)
T d1p22a2          13 ETSKGVYCLQY--DDQKIVSGLRD-NTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVR---VWDVNT   84 (293)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESS-SCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEE---EEESSS
T ss_pred             CCCCCEEEEEE--cCCEEEEEeCC-CeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccc---cccccc
Confidence            47888998765  79999999877 69999998765  6788999999999887  578999999999999   999964


Q ss_pred             Cee-eEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC----eeeecCCCCccEEEEEEcCCCCEEEEEecCc-E
Q psy11524        157 RQL-YSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW----SHSLDKPDTGSVYDLVWSNDATQIAGACANV-I  229 (323)
Q Consensus       157 ~~~-~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i  229 (323)
                      ... ........  ....+.+....++++..+ .+.+||....    .......|...+....+.++  .+++++.|+ +
T Consensus        85 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s~d~~i  160 (293)
T d1p22a2          85 GEMLNTLIHHCE--AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTI  160 (293)
T ss_dssp             CCEEEEECCCCS--CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT--EEEEEETTSEE
T ss_pred             cccccccccccc--ccccccccccceeecccccceeEeeccccccccccccccccccccccceeccc--ccccccCCCce
Confidence            443 33333322  233455566678888875 9999997643    23355667888888877654  688899999 9


Q ss_pred             EEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCe
Q psy11524        230 HIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQ  305 (323)
Q Consensus       230 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~  305 (323)
                      ++||.++++.+..  +.++...+..+.+++      ..++.+..++.+++|++...    ....|...+..  +++++.+
T Consensus       161 ~~~d~~~~~~~~~--~~~~~~~v~~~~~~~------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~  230 (293)
T d1p22a2         161 KVWNTSTCEFVRT--LNGHKRGIACLQYRD------RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKR  230 (293)
T ss_dssp             EEEETTTCCEEEE--EECCSSCEEEEEEET------TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSE
T ss_pred             eeecCCCCcEEEE--EcccccccccccCCC------CeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceE
Confidence            9999999998887  677888888877764      57888889999999988765    33444555654  5678889


Q ss_pred             eEeeecCCeEEEEEee
Q psy11524        306 IAGACANGSLLLGTII  321 (323)
Q Consensus       306 l~s~~~dg~i~~~~l~  321 (323)
                      |++++.||.|++|++.
T Consensus       231 l~sg~~dg~i~iwd~~  246 (293)
T d1p22a2         231 IVSGAYDGKIKVWDLV  246 (293)
T ss_dssp             EEEEETTSCEEEEEHH
T ss_pred             EEEEcCCCEEEEEECC
Confidence            9999999999999863

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=1.3e-22  Score=164.13  Aligned_cols=242  Identities=14%  Similarity=0.111  Sum_probs=179.7

Q ss_pred             cc-cccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEE-EEcCC
Q psy11524         68 WP-QALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLIL-SGGED  143 (323)
Q Consensus        68 ~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d  143 (323)
                      || .+.++.+++.....+..++|+|||++|++++..++.|.+||..+.  +..+..+. .+..++|++++..++ ++..+
T Consensus        17 ~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   95 (301)
T d1l0qa2          17 IDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMAS   95 (301)
T ss_dssp             EETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTT
T ss_pred             EECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccccccccccccccc
Confidence            45 566777777777889999999999999777666679999998766  44555544 568999999998655 45567


Q ss_pred             CceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC-C-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEE
Q psy11524        144 CKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQI  221 (323)
Q Consensus       144 ~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l  221 (323)
                      +.+.   +|+...........+.....++.|+|++..++.+.. + .+.+|+...........+...+..++++|+++.+
T Consensus        96 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (301)
T d1l0qa2          96 STLS---VIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKV  172 (301)
T ss_dssp             TEEE---EEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEE
T ss_pred             ceee---ecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccce
Confidence            7888   999975554444445567789999999999877776 5 8999998866544333355668899999999998


Q ss_pred             EEEecCc--EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCC---CCeEEEecccc----cCCCCcc
Q psy11524        222 AGACANV--IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKN---RDLYLSMWSHS----LDKPDTG  292 (323)
Q Consensus       222 ~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~---~~~~~~~~~~~----~~~~~~~  292 (323)
                      ++++.+.  +.+|+....+....   ......+..++|++++    ..+.+...+   +.+.+|+....    .... ..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g----~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~-~~  244 (301)
T d1l0qa2         173 YVANFDSMSISVIDTVTNSVIDT---VKVEAAPSGIAVNPEG----TKAYVTNVDKYFNTVSMIDTGTNKITARIPV-GP  244 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEE---EECSSEEEEEEECTTS----SEEEEEEECSSCCEEEEEETTTTEEEEEEEC-CS
T ss_pred             eeecccccccccccccceeeeec---ccccCCcceeeccccc----cccccccccceeeeeeeeecCCCeEEEEEcC-CC
Confidence            8888765  88888777766665   2334567789999998    555544322   34667766553    1111 45


Q ss_pred             ceeEEEEeeCCCee-EeeecCCeEEEEEee
Q psy11524        293 SVYDLVWSSDATQI-AGACANGSLLLGTII  321 (323)
Q Consensus       293 ~v~~~~~s~~g~~l-~s~~~dg~i~~~~l~  321 (323)
                      .+.+++|+|||++| ++++.|+.|++|++.
T Consensus       245 ~~~~va~spdg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         245 DPAGIAVTPDGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence            68999999999977 577889999999974

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=6.9e-25  Score=182.24  Aligned_cols=187  Identities=10%  Similarity=0.037  Sum_probs=155.9

Q ss_pred             EEEEcC-CCCeEEEEeeCCeEEEEeCCCCceeEeeccCCCeEEEEECCCCCEEEEEcCCC--ceEeeeEEeCCCCeeeEe
Q psy11524         86 SAAWSP-DSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDC--KYKASFVWDTDGRQLYSS  162 (323)
Q Consensus        86 ~~~~sp-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~i~v~d~~~~~~~~~  162 (323)
                      ...||| ||+++|+++.  +.|++|+..++......|...|.+++|+|||++|++++.+.  .|+   +||.+++....+
T Consensus         7 ~~~fSP~dG~~~a~~~~--g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~---v~d~~~~~~~~~   81 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR--GQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLG---IYDYRTGKAEKF   81 (360)
T ss_dssp             EEEEEECGGGCEEEEET--TEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEE---EEETTTCCEEEC
T ss_pred             cccccCCCCCEEEEEEC--CeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEE---EEECCCCcEEEe
Confidence            467999 9999998754  48999999887444447999999999999999998876553  677   999998888889


Q ss_pred             ecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEe----------cCc-E
Q psy11524        163 LTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGAC----------ANV-I  229 (323)
Q Consensus       163 ~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~-i  229 (323)
                      ..+...+.+++|+|+|++|++++.+ .+++|++.+. .......+...+.+++|+|+|++|+.+.          .++ +
T Consensus        82 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~  161 (360)
T d1k32a3          82 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI  161 (360)
T ss_dssp             CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred             eCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccce
Confidence            9999999999999999999999996 9999998754 4556667888899999999999998653          345 8


Q ss_pred             EEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        230 HIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       230 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      ++||+.+++....   ..+...+..++|+|+|    +.|+....++.+.+|+...
T Consensus       162 ~v~d~~~~~~~~~---~~~~~~~~~~~~spdg----~~l~~~s~~~~~~~~d~~~  209 (360)
T d1k32a3         162 HVYDMEGRKIFAA---TTENSHDYAPAFDADS----KNLYYLSYRSLDPSPDRVV  209 (360)
T ss_dssp             EEEETTTTEEEEC---SCSSSBEEEEEECTTS----CEEEEEESCCCCCEECSSS
T ss_pred             eeeccccCceeee---cccccccccccccCCC----CEEEEEeCCCceEcccccc
Confidence            9999998876653   5677788999999999    7888888888888877543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=7.6e-22  Score=168.05  Aligned_cols=246  Identities=8%  Similarity=0.006  Sum_probs=165.8

Q ss_pred             cc-cccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc----eeEe---eccCCCeEEEEECCCCCEEEE
Q psy11524         68 WP-QALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK----ATKW---QAHDGLILKVAWCSSTDLILS  139 (323)
Q Consensus        68 ~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----~~~~---~~~~~~v~~~~~~~~~~~l~~  139 (323)
                      || .+.++.++++....+..++|||||+++++++.+ +.+++||....    ...+   .+|.+.+.+++|+|||+++++
T Consensus        47 wD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d-~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v  125 (426)
T d1hzua2          47 VDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIA  125 (426)
T ss_dssp             EETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred             EECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCC-CCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEE
Confidence            66 456777888777789999999999999988776 59999998654    1222   245566677888899998755


Q ss_pred             E-cCCCceEeeeEEeCC-CCeeeEeecCC-----------CceeEEEEecCCCEEEEEeCC--eEEEEeCCCC--eeeec
Q psy11524        140 G-GEDCKYKASFVWDTD-GRQLYSSLTHD-----------HPISSLAWAPGGDMFAVGSYN--TLRLCDKVGW--SHSLD  202 (323)
Q Consensus       140 ~-~~d~~i~~i~v~d~~-~~~~~~~~~~~-----------~~v~~~~~~p~~~~l~~~~~~--~i~i~d~~~~--~~~~~  202 (323)
                      + ..++.+.   +||.. +.....+..+.           .....+.+++++..++....+  .+.+++....  .....
T Consensus       126 ~~~~~~~v~---i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  202 (426)
T d1hzua2         126 GAYWPPQFA---IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS  202 (426)
T ss_dssp             EEEESSEEE---EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEE
T ss_pred             eecCCCeEE---EEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEE
Confidence            5 4789999   99996 44444444332           334556667777776666653  5666664432  12223


Q ss_pred             CCCCccEEEEEEcCCCCEEEEEecCc--EEEEEcCCCceeeee-------------------------------------
Q psy11524        203 KPDTGSVYDLVWSNDATQIAGACANV--IHIFDISSSSSSNVT-------------------------------------  243 (323)
Q Consensus       203 ~~~~~~v~~~~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~-------------------------------------  243 (323)
                      .++...+..+.|+|++++++++..+.  +.+++..+++.+...                                     
T Consensus       203 ~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~  282 (426)
T d1hzua2         203 IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIG  282 (426)
T ss_dssp             EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEE
T ss_pred             eccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEee
Confidence            34667789999999999888877554  777775544322110                                     


Q ss_pred             ---------------cCCCCccceEEEEEccCCCCccceEEE-------EeCCCCeEEEecccc-------------cCC
Q psy11524        244 ---------------APLSHSHEITQLAVNQTGSLQERHVAF-------IDKNRDLYLSMWSHS-------------LDK  288 (323)
Q Consensus       244 ---------------~~~~~~~~v~~~~~~p~g~~~d~~l~~-------~~~~~~~~~~~~~~~-------------~~~  288 (323)
                                     .+.+|...+..++|+|++    ..+++       ...++.+.+|++.++             ...
T Consensus       283 ~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg----~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~  358 (426)
T d1hzua2         283 TDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS----SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLG  358 (426)
T ss_dssp             CCTTTCTTTBTSEEEEEECSSSCCCCEECCTTC----SEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCC
T ss_pred             ccccccccccceEeEEEecCCCceeEEEcCCCC----ceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccC
Confidence                           033456668889999998    55553       123455777776553             122


Q ss_pred             CCccceeEEEEeeCCCeeE-ee----ecCCeEEEEEee
Q psy11524        289 PDTGSVYDLVWSSDATQIA-GA----CANGSLLLGTII  321 (323)
Q Consensus       289 ~~~~~v~~~~~s~~g~~l~-s~----~~dg~i~~~~l~  321 (323)
                      .|...|.+++|||||++++ ++    +.+|.|++||..
T Consensus       359 ~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~  396 (426)
T d1hzua2         359 EGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK  396 (426)
T ss_dssp             SSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETT
T ss_pred             CCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECC
Confidence            3466799999999999764 32    468899999853

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=8.4e-21  Score=161.55  Aligned_cols=276  Identities=8%  Similarity=-0.049  Sum_probs=168.0

Q ss_pred             eeeeEeecccceeEeeEeccCCcceeeeeecc---cccc-cc--ceeeecC----CCCCEEEEEEcCCCCeEEEEeeCCe
Q psy11524         35 KNHLTIRRYDGTVINYPISPYISVLHSYAASH---SWPQ-AL--SLCRTLN----VSPPVYSAAWSPDSNKVLLTQAKSL  104 (323)
Q Consensus        35 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~-~~--~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~~~~  104 (323)
                      +....+..+. .+..+.|||||+.++....++   .||- +.  .....+.    |...+.++.|+|||++|++++..++
T Consensus        53 ~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~  131 (432)
T d1qksa2          53 EIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPP  131 (432)
T ss_dssp             CEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETT
T ss_pred             cEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCC
Confidence            3445555554 588999999997776543332   2441 11  1222222    3445556677889999876666667


Q ss_pred             EEEEeCCCCc--eeEee-----------ccCCCeEEEEECCCCCEE-EEEcCCCceEeeeEEeCCC-CeeeEe-ecCCCc
Q psy11524        105 VIKPLSPNNK--ATKWQ-----------AHDGLILKVAWCSSTDLI-LSGGEDCKYKASFVWDTDG-RQLYSS-LTHDHP  168 (323)
Q Consensus       105 ~v~~~~~~~~--~~~~~-----------~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~i~v~d~~~-~~~~~~-~~~~~~  168 (323)
                      .+++||....  ...+.           .+......+.++|+|..+ ++...++.|.   +|+... +..... ..+...
T Consensus       132 ~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~---~~d~~~~~~~~~~~i~~g~~  208 (432)
T d1qksa2         132 QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL---LVDYTDLNNLKTTEISAERF  208 (432)
T ss_dssp             EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE---EEETTCSSEEEEEEEECCSS
T ss_pred             eEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEE---EEEccCCCcceEEEEcccCc
Confidence            9999998765  23332           234566788999998865 5566788999   999853 333222 234567


Q ss_pred             eeEEEEecCCCEEEEEeC-C-eEEEEeCCCCeeeec------CCCCccEEEEEEcCCCCEEEEEec-Cc-EEEEEcCCCc
Q psy11524        169 ISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSHSLD------KPDTGSVYDLVWSNDATQIAGACA-NV-IHIFDISSSS  238 (323)
Q Consensus       169 v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~-d~-i~iwd~~~~~  238 (323)
                      +..++|+|+|+++++++. + .+.++|.........      ..+........+.+.+...++... ++ +.+|+.....
T Consensus       209 ~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~  288 (432)
T d1qksa2         209 LHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG  288 (432)
T ss_dssp             EEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred             cccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc
Confidence            889999999999888887 4 899999876543211      113333444455545544444432 55 7777754332


Q ss_pred             eeeeecCCCCccceEEEEEccCCC-----Ccc--------------------------ceEEEEeCCCCeEEEecccc-c
Q psy11524        239 SSNVTAPLSHSHEITQLAVNQTGS-----LQE--------------------------RHVAFIDKNRDLYLSMWSHS-L  286 (323)
Q Consensus       239 ~~~~~~~~~~~~~v~~~~~~p~g~-----~~d--------------------------~~l~~~~~~~~~~~~~~~~~-~  286 (323)
                            ...+...+....++|++.     +.+                          ..+++...++.+++|++... .
T Consensus       289 ------~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~  362 (432)
T d1qksa2         289 ------HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAG  362 (432)
T ss_dssp             ------CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHT
T ss_pred             ------ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEecccccccc
Confidence                  122223333333333331     000                          34444445566777776543 2


Q ss_pred             CCCCccceeEEEEeeCCCeeEeee-----cCCeEEEEEe
Q psy11524        287 DKPDTGSVYDLVWSSDATQIAGAC-----ANGSLLLGTI  320 (323)
Q Consensus       287 ~~~~~~~v~~~~~s~~g~~l~s~~-----~dg~i~~~~l  320 (323)
                      ...|...|.+++|||||++|+.+.     .+|.|.|||-
T Consensus       363 l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~  401 (432)
T d1qksa2         363 ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD  401 (432)
T ss_dssp             CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred             cCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEEC
Confidence            233567799999999999886443     4788999984

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=2.5e-19  Score=152.30  Aligned_cols=187  Identities=7%  Similarity=-0.022  Sum_probs=136.2

Q ss_pred             ceeEeeEeccCCcceeeeeeccccc-cccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc----eeEe-
Q psy11524         45 GTVINYPISPYISVLHSYAASHSWP-QALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK----ATKW-  118 (323)
Q Consensus        45 ~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~----~~~~-  118 (323)
                      ..+..+..++++...       .|| .+.++.+.+.....+..++|||||+++++++.+ +.+.+||....    ...+ 
T Consensus        31 ~~~~~v~~~d~g~v~-------v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~d-g~v~~~d~~t~~~~~~~~i~  102 (432)
T d1qksa2          31 ENLFSVTLRDAGQIA-------LIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRD-GKVNMIDLWMKEPTTVAEIK  102 (432)
T ss_dssp             GGEEEEEETTTTEEE-------EEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETT-SEEEEEETTSSSCCEEEEEE
T ss_pred             CcEEEEEEcCCCEEE-------EEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCC-CCEEEEEeeCCCceEEEEEe
Confidence            345556777766421       255 566777888766789999999999999998776 59999997653    1222 


Q ss_pred             --eccCCCeEEEEECCCCCEE-EEEcCCCceEeeeEEeCC-CCeeeEeec-----------CCCceeEEEEecCCCEEEE
Q psy11524        119 --QAHDGLILKVAWCSSTDLI-LSGGEDCKYKASFVWDTD-GRQLYSSLT-----------HDHPISSLAWAPGGDMFAV  183 (323)
Q Consensus       119 --~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~i~v~d~~-~~~~~~~~~-----------~~~~v~~~~~~p~~~~l~~  183 (323)
                        ..|.+.+.++.|+|||++| ++++.+++++   +||.. ++.+..+..           .......+.++|+|..+++
T Consensus       103 ~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~---i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~v  179 (432)
T d1qksa2         103 IGSEARSIETSKMEGWEDKYAIAGAYWPPQYV---IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV  179 (432)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEETTEEE---EEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred             cCCCCCCeEEecccCCCCCEEEEEcCCCCeEE---EEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEE
Confidence              2455566667788899976 6777899999   99996 455444432           3445667899999988766


Q ss_pred             EeC-C-eEEEEeCCCC-eee-ecCCCCccEEEEEEcCCCCEEEEEecCc--EEEEEcCCCceeee
Q psy11524        184 GSY-N-TLRLCDKVGW-SHS-LDKPDTGSVYDLVWSNDATQIAGACANV--IHIFDISSSSSSNV  242 (323)
Q Consensus       184 ~~~-~-~i~i~d~~~~-~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~  242 (323)
                      +.. + .+.+||.... ... ....+...+..++|+|+|+++++++.++  +.++|..+++.+..
T Consensus       180 s~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~  244 (432)
T d1qksa2         180 NVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI  244 (432)
T ss_dssp             EETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             EEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEE
Confidence            665 3 9999997653 222 2223556789999999999998888776  99999988877664

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=7.2e-20  Score=150.05  Aligned_cols=216  Identities=13%  Similarity=0.048  Sum_probs=145.8

Q ss_pred             CeEEEEeeCCeEEEEeCCCCc--eeEeec--cCCCeEEEEECCCCCEE-EEEcCCCceEeeeEEeCC-CCeeeEeecCC-
Q psy11524         94 NKVLLTQAKSLVIKPLSPNNK--ATKWQA--HDGLILKVAWCSSTDLI-LSGGEDCKYKASFVWDTD-GRQLYSSLTHD-  166 (323)
Q Consensus        94 ~~l~~~~~~~~~v~~~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l-~~~~~d~~i~~i~v~d~~-~~~~~~~~~~~-  166 (323)
                      +++++++.+ +.|.+||....  +..+..  +...+.+++|+|||+++ ++++.++.|.   +||++ ++.+..+..+. 
T Consensus         2 ~~~vt~~~d-~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~---v~D~~t~~~~~~~~~~~~   77 (337)
T d1pbyb_           2 DYILAPARP-DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLV---KIDLVTGETLGRIDLSTP   77 (337)
T ss_dssp             EEEEEEETT-TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEE---EEETTTCCEEEEEECCBT
T ss_pred             eEEEEEcCC-CEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEE---EEECCCCcEEEEEecCCC
Confidence            477888777 59999999876  444543  44567899999999987 4667899999   99996 56666665433 


Q ss_pred             ----CceeEEEEecCCCEEEEEeC-------------CeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCcE
Q psy11524        167 ----HPISSLAWAPGGDMFAVGSY-------------NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANVI  229 (323)
Q Consensus       167 ----~~v~~~~~~p~~~~l~~~~~-------------~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~i  229 (323)
                          ..+..++|+|++++++++..             ..+.+||...............+..++|+|+|+++++++.+ +
T Consensus        78 ~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~  156 (337)
T d1pbyb_          78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD-L  156 (337)
T ss_dssp             TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS-E
T ss_pred             cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC-c
Confidence                23567999999999887752             26888998766554333355678899999999999987533 7


Q ss_pred             EEEEcCCCceeeeecCC---------------------------------------------------------------
Q psy11524        230 HIFDISSSSSSNVTAPL---------------------------------------------------------------  246 (323)
Q Consensus       230 ~iwd~~~~~~~~~~~~~---------------------------------------------------------------  246 (323)
                      .+||..+++...+....                                                               
T Consensus       157 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (337)
T d1pbyb_         157 HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV  236 (337)
T ss_dssp             EEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred             ceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe
Confidence            77887766544432110                                                               


Q ss_pred             -CCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        247 -SHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       247 -~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                       .+...+..++++|++    ..+..  .++.+.+|++...    .. .+...+.+++|+|||++|++++.|+.|++|++.
T Consensus       237 ~~~~~~~~~~~~~~~~----~~~~~--~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~  309 (337)
T d1pbyb_         237 RIMDVFYFSTAVNPAK----TRAFG--AYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             EECSSCEEEEEECTTS----SEEEE--EESEEEEEETTTTEEEEEE-ECSSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred             cCCCcceEEEEecccc----eEEEE--ccccEEEEECCCCcEEEEE-cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence             011112223333333    22221  2244555555543    11 125678999999999999999999999999974

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=5.4e-20  Score=151.37  Aligned_cols=259  Identities=7%  Similarity=-0.070  Sum_probs=162.3

Q ss_pred             eEeccCCcceeeeeecc---ccc-cccceeeecC--CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeecc
Q psy11524         50 YPISPYISVLHSYAASH---SWP-QALSLCRTLN--VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAH  121 (323)
Q Consensus        50 ~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~  121 (323)
                      ++|+++++.++..-.++   .|| .+.++.+++.  +...+.+++|+|||+++++++..++.|++||....  ...+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            46788885444333222   355 4555566543  56778999999999999877766679999998776  2233221


Q ss_pred             ------CCCeEEEEECCCCCEEEEEcC------------CCceEeeeEEeCC-CCeeeEe--ecCCCceeEEEEecCCCE
Q psy11524        122 ------DGLILKVAWCSSTDLILSGGE------------DCKYKASFVWDTD-GRQLYSS--LTHDHPISSLAWAPGGDM  180 (323)
Q Consensus       122 ------~~~v~~~~~~~~~~~l~~~~~------------d~~i~~i~v~d~~-~~~~~~~--~~~~~~v~~~~~~p~~~~  180 (323)
                            ...+..++|+|||+++++++.            ++.+.   +|+.. ++....+  ......+..+.+++++..
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLE---VFSTADGLEAKPVRTFPMPRQVYLMRAADDGSL  158 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEE---EEEGGGGGGBCCSEEEECCSSCCCEEECTTSCE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEE---EEecccceeeeEEEeeeccCceEEEEecCCCEE
Confidence                  123567899999999887753            55666   78774 2222222  222345666777777776


Q ss_pred             EEEEeCCeEEEEeCCCC-eeeecCCCCccEEEEEEcCCCC--------------------------EEEEEecCc-EEEE
Q psy11524        181 FAVGSYNTLRLCDKVGW-SHSLDKPDTGSVYDLVWSNDAT--------------------------QIAGACANV-IHIF  232 (323)
Q Consensus       181 l~~~~~~~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~--------------------------~l~~~~~d~-i~iw  232 (323)
                      ++++  +.+.+|+.... ...... .......+.++|++.                          .++++..+. +.+|
T Consensus       159 ~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
T d1jmxb_         159 YVAG--PDIYKMDVKTGKYTVALP-LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  235 (346)
T ss_dssp             EEES--SSEEEECTTTCCEEEEEC-STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             EEeC--CcceEEEccCCCEEEEEe-cCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEE
Confidence            6543  36788887643 322222 112223333333332                          233344455 8888


Q ss_pred             EcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEe
Q psy11524        233 DISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAG  308 (323)
Q Consensus       233 d~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s  308 (323)
                      |..++...... ...+...+..+.+++++    ..+..... +.+.+|+....    ... +...+.+++|||||++|++
T Consensus       236 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v  308 (346)
T d1jmxb_         236 DLKTGKTHTQE-FADLTELYFTGLRSPKD----PNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYL  308 (346)
T ss_dssp             ETTTCCEEEEE-EEECSSCEEEEEECSSC----TTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEE
T ss_pred             ECCCCceEEEE-eecccceeEEEEEeCCC----CEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEE
Confidence            98887765542 44567778888999887    44444332 34555555443    111 2457899999999999999


Q ss_pred             eecCCeEEEEEee
Q psy11524        309 ACANGSLLLGTII  321 (323)
Q Consensus       309 ~~~dg~i~~~~l~  321 (323)
                      ++.|+.|++||+.
T Consensus       309 ~~~d~~v~v~D~~  321 (346)
T d1jmxb_         309 GGTFNDLAVFNPD  321 (346)
T ss_dssp             ESBSSEEEEEETT
T ss_pred             EeCCCcEEEEECc
Confidence            9999999999974

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=5.8e-19  Score=144.58  Aligned_cols=243  Identities=11%  Similarity=0.107  Sum_probs=163.6

Q ss_pred             cceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEe---eccCCCeEEEEECCCCCEEEEEcC-CCc
Q psy11524         72 LSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKW---QAHDGLILKVAWCSSTDLILSGGE-DCK  145 (323)
Q Consensus        72 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~---~~~~~~v~~~~~~~~~~~l~~~~~-d~~  145 (323)
                      .++.+.+++.+.+..++|||||++|++++.+++.|.+|+....  ...+   ..+...+..++|+|||++|++++. ++.
T Consensus        27 l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~  106 (333)
T d1ri6a_          27 LTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGN  106 (333)
T ss_dssp             EEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTE
T ss_pred             eEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCc
Confidence            4556777899999999999999999888776678888876543  2222   234456778999999999988875 667


Q ss_pred             eEeeeEEeCCCCe---eeEeecCCCceeEEEEecCCCEEEEEeC-C-eEEEEeCCCC--ee-----eecCCCCccEEEEE
Q psy11524        146 YKASFVWDTDGRQ---LYSSLTHDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGW--SH-----SLDKPDTGSVYDLV  213 (323)
Q Consensus       146 i~~i~v~d~~~~~---~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~--~~-----~~~~~~~~~v~~~~  213 (323)
                      +.   +|+.....   ......+...+.++.++|++++++.++. + .+.+|+....  ..     ............++
T Consensus       107 v~---~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~  183 (333)
T d1ri6a_         107 VS---VTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMV  183 (333)
T ss_dssp             EE---EEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEE
T ss_pred             ee---eeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEE
Confidence            88   88875332   2333456667889999999999988887 4 8999996532  11     12223445678999


Q ss_pred             EcCCCCEEEEEecCc--EEEEEcCCCcee----eeec----CCCCccceEEEEEccCCCCccceEEEEe-CCCCeEEEec
Q psy11524        214 WSNDATQIAGACANV--IHIFDISSSSSS----NVTA----PLSHSHEITQLAVNQTGSLQERHVAFID-KNRDLYLSMW  282 (323)
Q Consensus       214 ~~~~~~~l~~~~~d~--i~iwd~~~~~~~----~~~~----~~~~~~~v~~~~~~p~g~~~d~~l~~~~-~~~~~~~~~~  282 (323)
                      |++++.+++......  ..+++.......    ....    ..........+++++++    +.+.... ..+.+.+|.+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~----~~~~~~~~~~~~~~~~~~  259 (333)
T d1ri6a_         184 FHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG----RHLYACDRTASLITVFSV  259 (333)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS----SEEEEEETTTTEEEEEEE
T ss_pred             EeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEeccc----CceeeecccCCeEEEEEE
Confidence            999999887766544  888876543211    1100    01223456778899998    4444333 3344555554


Q ss_pred             ccc--c-----CCCCccceeEEEEeeCCCeeEeee-cCCeEEEEEee
Q psy11524        283 SHS--L-----DKPDTGSVYDLVWSSDATQIAGAC-ANGSLLLGTII  321 (323)
Q Consensus       283 ~~~--~-----~~~~~~~v~~~~~s~~g~~l~s~~-~dg~i~~~~l~  321 (323)
                      ...  .     .......+.+++|+|||++|++++ .++.|.+|++-
T Consensus       260 ~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         260 SEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             CTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             cCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            432  0     001134567899999999877654 56899999773

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.84  E-value=1e-17  Score=134.93  Aligned_cols=230  Identities=13%  Similarity=0.100  Sum_probs=169.7

Q ss_pred             ceeEeeEeccCCcceeeee-ecc---ccc-cccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEe
Q psy11524         45 GTVINYPISPYISVLHSYA-ASH---SWP-QALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKW  118 (323)
Q Consensus        45 ~~v~~~~~~~~~~~~~~~~-~~~---~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~  118 (323)
                      .....++|+|||+.++... .++   .|| .+.+..+.+.....+..++|+++++++++++..+..+.+|+.... ....
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT  111 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccccccccccccccceeeecccccceeeee
Confidence            3467899999997664221 111   355 455566666666778999999999998888777778999988766 3333


Q ss_pred             eccCCCeEEEEECCCCCEEE-EEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC-C-eEEEEeCC
Q psy11524        119 QAHDGLILKVAWCSSTDLIL-SGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKV  195 (323)
Q Consensus       119 ~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~  195 (323)
                      ..+...+..+.|+|++..++ ++..++.+.   +|+...............+..++++|++..++++.. + .+.+|+..
T Consensus       112 ~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (301)
T d1l0qa2         112 VKTGKSPLGLALSPDGKKLYVTNNGDKTVS---VINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTV  188 (301)
T ss_dssp             EECSSSEEEEEECTTSSEEEEEETTTTEEE---EEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ccccccceEEEeecCCCeeeeeecccccee---eeeccccceeeecccCCCceEEEeeccccceeeeccccccccccccc
Confidence            34556778999999998765 555678888   999975555444445566889999999999888887 3 78888877


Q ss_pred             CCeeeecCCCCccEEEEEEcCCCCEEEEEec---Cc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEE-
Q psy11524        196 GWSHSLDKPDTGSVYDLVWSNDATQIAGACA---NV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAF-  270 (323)
Q Consensus       196 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~-  270 (323)
                      .............+..++++++++.++++..   ++ |++||..+++.+..  +. ....+..++|+|+|    +.|.+ 
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~--~~-~~~~~~~va~spdg----~~l~va  261 (301)
T d1l0qa2         189 TNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITAR--IP-VGPDPAGIAVTPDG----KKVYVA  261 (301)
T ss_dssp             TTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEE--EE-CCSSEEEEEECTTS----SEEEEE
T ss_pred             ceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEE--Ec-CCCCEEEEEEeCCC----CEEEEE
Confidence            6655444445566889999999998876543   35 99999999998876  33 33467899999999    66654 


Q ss_pred             EeCCCCeEEEeccc
Q psy11524        271 IDKNRDLYLSMWSH  284 (323)
Q Consensus       271 ~~~~~~~~~~~~~~  284 (323)
                      ...++.+.+|++.+
T Consensus       262 ~~~~~~i~v~D~~t  275 (301)
T d1l0qa2         262 LSFCNTVSVIDTAT  275 (301)
T ss_dssp             ETTTTEEEEEETTT
T ss_pred             ECCCCeEEEEECCC
Confidence            44567888998876

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.83  E-value=2.1e-19  Score=152.79  Aligned_cols=228  Identities=11%  Similarity=0.033  Sum_probs=149.3

Q ss_pred             EcCCCC-eEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCC-Cee--eEe
Q psy11524         89 WSPDSN-KVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG-RQL--YSS  162 (323)
Q Consensus        89 ~sp~~~-~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~-~~~--~~~  162 (323)
                      ++.+.+ .++++..+++.|++||..+.  +..+..+ ..+..++|+|||++|++++.|++++   +||+.. +..  ..+
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~---vwd~~t~~~~~~~~i  101 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARID---MIDLWAKEPTKVAEI  101 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEE---EEETTSSSCEEEEEE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEE---EEEccCCceeEEEEE
Confidence            555544 33344556689999998875  5667665 4689999999999999999999999   999963 322  222


Q ss_pred             e---cCCCceeEEEEecCCCEEEEEeC-C-eEEEEeCCCC-eeeecCCC-----------CccEEEEEEcCCCCEEEEEe
Q psy11524        163 L---THDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGW-SHSLDKPD-----------TGSVYDLVWSNDATQIAGAC  225 (323)
Q Consensus       163 ~---~~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~-~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~  225 (323)
                      .   .+...+.+++|+|||+++++++. + .+.+||.... .......+           ......+..++++..++...
T Consensus       102 ~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~  181 (426)
T d1hzua2         102 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV  181 (426)
T ss_dssp             ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEec
Confidence            2   34445667778899999877765 5 9999998754 33333222           33456677778777777666


Q ss_pred             cCc--EEEEEcCCCceeeeecCCCCccceEEEEEccCCC------CccceEEEEeC------------------------
Q psy11524        226 ANV--IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGS------LQERHVAFIDK------------------------  273 (323)
Q Consensus       226 ~d~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~------~~d~~l~~~~~------------------------  273 (323)
                      .+.  +.+++......+... ...+...+..++|+|+++      ..+..+.+++.                        
T Consensus       182 ~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (426)
T d1hzua2         182 KETGKVLLVNYKDIDNLTVT-SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFV  260 (426)
T ss_dssp             TTTTEEEEEECSSSSSCEEE-EEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEE
T ss_pred             CCCCeEEEEEeccccceeeE-EeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeee
Confidence            554  667766655433321 235667788899999885      11111212211                        


Q ss_pred             --------------CCCeEEEecccc-----------cCCCCccceeEEEEeeCCCeeE-------eeecCCeEEEEEee
Q psy11524        274 --------------NRDLYLSMWSHS-----------LDKPDTGSVYDLVWSSDATQIA-------GACANGSLLLGTII  321 (323)
Q Consensus       274 --------------~~~~~~~~~~~~-----------~~~~~~~~v~~~~~s~~g~~l~-------s~~~dg~i~~~~l~  321 (323)
                                    ++.+..+.....           ....|...+..++|+|||++|+       +++.|++|++|++.
T Consensus       261 ~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~  340 (426)
T d1hzua2         261 HPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLK  340 (426)
T ss_dssp             ETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETT
T ss_pred             cCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECC
Confidence                          111222221110           2345677899999999999999       46778999999963

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.79  E-value=2.1e-16  Score=131.36  Aligned_cols=275  Identities=10%  Similarity=-0.072  Sum_probs=166.1

Q ss_pred             eecccceeEeeEeccCCcceeeeeecc--------ccc-cccceeeecCCCCCEEEEEEcCCCCeEEEEeeC--------
Q psy11524         40 IRRYDGTVINYPISPYISVLHSYAASH--------SWP-QALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAK--------  102 (323)
Q Consensus        40 ~~~~~~~v~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~--------  102 (323)
                      ...+.+++.+++++|||+.++......        .|| .+.++...+.. .....++|+|||++|+++...        
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~-~~~~~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG-GFLPNPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeC-CCCccEEEcCCCCEEEEEeecCCcccccc
Confidence            346788899999999998775321111        244 55666666642 223379999999999988632        


Q ss_pred             -CeEEEEeCCCCc--eeEeeccCCC-------eEEEEECCCCCEEEEEc--CCCceEeeeEEeCCCCeeeEeecCCCcee
Q psy11524        103 -SLVIKPLSPNNK--ATKWQAHDGL-------ILKVAWCSSTDLILSGG--EDCKYKASFVWDTDGRQLYSSLTHDHPIS  170 (323)
Q Consensus       103 -~~~v~~~~~~~~--~~~~~~~~~~-------v~~~~~~~~~~~l~~~~--~d~~i~~i~v~d~~~~~~~~~~~~~~~v~  170 (323)
                       .+.|.+||..+.  ...+..+...       ...+.|+++++.++...  .++.+.   +|+........   +.....
T Consensus        95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~---~~~~~~~~~~~---~~~~~~  168 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVG---LVVQGGSSDDQ---LLSSPT  168 (373)
T ss_pred             cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceE---EeeccCCeEEE---Eeccce
Confidence             357999998765  3333333332       24578888888665554  456677   88876443322   223456


Q ss_pred             EEEEecCCCEEE-EEeCC-eEEEEeCCCCeee-ecC------CCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCcee
Q psy11524        171 SLAWAPGGDMFA-VGSYN-TLRLCDKVGWSHS-LDK------PDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSS  240 (323)
Q Consensus       171 ~~~~~p~~~~l~-~~~~~-~i~i~d~~~~~~~-~~~------~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~  240 (323)
                      ++.++|+|+.++ +.+.+ .+.+||....... ...      ..........+++++.++ ..+.++ +.+|+...+...
T Consensus       169 ~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~  247 (373)
T d2madh_         169 CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADISAAGAT  247 (373)
T ss_pred             eEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEE-EecCCceEEEEEcCCCeEE
Confidence            789999988754 44445 9999998754332 111      112234456667766544 555667 999998776543


Q ss_pred             eeecCCCCc----------cceEEEEEccCCC------CccceEEEEeCCCCeEEEecccc---cCCCCccceeEEEEee
Q psy11524        241 NVTAPLSHS----------HEITQLAVNQTGS------LQERHVAFIDKNRDLYLSMWSHS---LDKPDTGSVYDLVWSS  301 (323)
Q Consensus       241 ~~~~~~~~~----------~~v~~~~~~p~g~------~~d~~l~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~  301 (323)
                      .........          .....++++|++.      .....+......+.+.+|+....   ....+...+.+++|+|
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~sp  327 (373)
T d2madh_         248 NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQ  327 (373)
T ss_pred             EEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECC
Confidence            321122221          2234456666663      11111222223334555555443   0011367789999999


Q ss_pred             CCCe--eEeeecCCeEEEEEeec
Q psy11524        302 DATQ--IAGACANGSLLLGTIIQ  322 (323)
Q Consensus       302 ~g~~--l~s~~~dg~i~~~~l~~  322 (323)
                      ||+.  +++++.|+.|++||+.+
T Consensus       328 DG~~~l~vt~~~d~~v~v~D~~t  350 (373)
T d2madh_         328 DGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             CCCEEEEEEeCCCCeEEEEECCC
Confidence            9984  46889999999999753

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=8.7e-17  Score=131.38  Aligned_cols=214  Identities=13%  Similarity=0.094  Sum_probs=149.3

Q ss_pred             ccceeeecC---CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccC-----CCeEEEEECCCCCEEEEE
Q psy11524         71 ALSLCRTLN---VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHD-----GLILKVAWCSSTDLILSG  140 (323)
Q Consensus        71 ~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~-----~~v~~~~~~~~~~~l~~~  140 (323)
                      +.++.+.+.   +...+.+++|+|||+++++++..++.|.+||..+.  ...+..+.     ..+..++|+|++++++++
T Consensus        20 s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~   99 (337)
T d1pbyb_          20 KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIY   99 (337)
T ss_dssp             TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEE
T ss_pred             CCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEe
Confidence            345555553   45668899999999998766655579999998765  33443332     234578999999999887


Q ss_pred             cC------------CCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCeee--------
Q psy11524        141 GE------------DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHS--------  200 (323)
Q Consensus       141 ~~------------d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~~~--------  200 (323)
                      ..            +..+.   +||...............+..++|+|||+++++++.+ +.+||.......        
T Consensus       100 ~~~~~~~~~~~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~~~~d~~~~~~~~~~~~~~~  175 (337)
T d1pbyb_         100 ESPVRLELTHFEVQPTRVA---LYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD-LHVMDPEAGTLVEDKPIQSW  175 (337)
T ss_dssp             EEEEEECSSCEEECCCEEE---EEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS-EEEEETTTTEEEEEECSTTT
T ss_pred             ecCCcceeeecccccccee---eccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC-cceeeeecCcEEEEeecCCc
Confidence            64            45566   8888755554444456678899999999999887644 456765432110        


Q ss_pred             -----------------------------------------------------------ecCCCCccEEEEEEcCCCCEE
Q psy11524        201 -----------------------------------------------------------LDKPDTGSVYDLVWSNDATQI  221 (323)
Q Consensus       201 -----------------------------------------------------------~~~~~~~~v~~~~~~~~~~~l  221 (323)
                                                                                 ....+...+..+.++|++.++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (337)
T d1pbyb_         176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA  255 (337)
T ss_dssp             TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred             cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEE
Confidence                                                                       011123345566777888777


Q ss_pred             EEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccccCCCCccceeEEEEe
Q psy11524        222 AGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWS  300 (323)
Q Consensus       222 ~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  300 (323)
                      +.+  ++ |++||+.+++.+..+   .+...+.+++|+|+|    +.+++.+.++.+.+|+..+      ...+..+...
T Consensus       256 ~~~--~~~i~v~d~~~~~~~~~~---~~~~~~~~~~~s~dG----~~l~v~~~~~~i~v~D~~t------~~~v~~i~~~  320 (337)
T d1pbyb_         256 FGA--YNVLESFDLEKNASIKRV---PLPHSYYSVNVSTDG----STVWLGGALGDLAAYDAET------LEKKGQVDLP  320 (337)
T ss_dssp             EEE--ESEEEEEETTTTEEEEEE---ECSSCCCEEEECTTS----CEEEEESBSSEEEEEETTT------CCEEEEEECG
T ss_pred             EEc--cccEEEEECCCCcEEEEE---cCCCCEEEEEECCCC----CEEEEEeCCCcEEEEECCC------CcEEEEEECC
Confidence            655  47 999999999988873   345678899999999    8899999999999999987      4455555443


Q ss_pred             eCC
Q psy11524        301 SDA  303 (323)
Q Consensus       301 ~~g  303 (323)
                      ..+
T Consensus       321 g~~  323 (337)
T d1pbyb_         321 GNA  323 (337)
T ss_dssp             GGC
T ss_pred             CCC
Confidence            333

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=9.1e-16  Score=125.18  Aligned_cols=220  Identities=10%  Similarity=0.075  Sum_probs=146.9

Q ss_pred             eEEEEeeCCeEEEEeCCCCc--e--eEeeccCCCeEEEEECCCCCEEEEE-cCCCceEeeeEEeCCC-C-e--eeEeecC
Q psy11524         95 KVLLTQAKSLVIKPLSPNNK--A--TKWQAHDGLILKVAWCSSTDLILSG-GEDCKYKASFVWDTDG-R-Q--LYSSLTH  165 (323)
Q Consensus        95 ~l~~~~~~~~~v~~~~~~~~--~--~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~i~v~d~~~-~-~--~~~~~~~  165 (323)
                      .+++++.+++.|++|++...  +  .....|.+.+..++|+|||++|+++ ..|+.|+   +|++.. . .  .......
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~---~~~i~~~~~~~~~~~~~~~   81 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVL---AYRIAPDDGALTFAAESAL   81 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEE---EEEECTTTCCEEEEEEEEC
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEE---EEEEeCCCCcEEEeeeccc
Confidence            34455555569999986542  2  3344788999999999999988555 4589999   999852 2 2  2222334


Q ss_pred             CCceeEEEEecCCCEEEEEeC-C-eEEEEeCCCCee---eecCCCCccEEEEEEcCCCCEEEEEecCc--EEEEEcCCCc
Q psy11524        166 DHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSH---SLDKPDTGSVYDLVWSNDATQIAGACANV--IHIFDISSSS  238 (323)
Q Consensus       166 ~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--i~iwd~~~~~  238 (323)
                      ...+..++|+|||+++++++. + .+.+|+......   .....+...+.++.++|++++++.++.+.  |.+|+.....
T Consensus        82 ~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~  161 (333)
T d1ri6a_          82 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG  161 (333)
T ss_dssp             SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCC
Confidence            556788999999999999987 5 899998664322   23334666788999999999998888766  9999987654


Q ss_pred             eeeee----cCCCCccceEEEEEccCCCCccceEEEEe-CCCCeEEEecccc------------c--CCCCccceeEEEE
Q psy11524        239 SSNVT----APLSHSHEITQLAVNQTGSLQERHVAFID-KNRDLYLSMWSHS------------L--DKPDTGSVYDLVW  299 (323)
Q Consensus       239 ~~~~~----~~~~~~~~v~~~~~~p~g~~~d~~l~~~~-~~~~~~~~~~~~~------------~--~~~~~~~v~~~~~  299 (323)
                      .....    ...........++|++++    ..+.... ..+...++.....            .  ..........+++
T Consensus       162 ~~~~~~~~~~~~~~g~~p~~i~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (333)
T d1ri6a_         162 HLVAQDPAEVTTVEGAGPRHMVFHPNE----QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  237 (333)
T ss_dssp             CEEEEEEEEEECSTTCCEEEEEECTTS----SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             cceeeeceeeeeecCCCccEEEEeccc----eeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEE
Confidence            32210    012334556889999998    4444433 2333444443221            0  0111345678899


Q ss_pred             eeCCCeeE-eeecCCeEEEEEee
Q psy11524        300 SSDATQIA-GACANGSLLLGTII  321 (323)
Q Consensus       300 s~~g~~l~-s~~~dg~i~~~~l~  321 (323)
                      ++++++++ ++..++.+.+|++.
T Consensus       238 s~d~~~~~~~~~~~~~~~~~~~~  260 (333)
T d1ri6a_         238 TPDGRHLYACDRTASLITVFSVS  260 (333)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEC
T ss_pred             ecccCceeeecccCCeEEEEEEc
Confidence            99998666 55567889999874

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=1.5e-16  Score=131.20  Aligned_cols=228  Identities=14%  Similarity=0.071  Sum_probs=140.6

Q ss_pred             CEEEEEEcCCCCeEEEEee----CCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEc----------CCCce
Q psy11524         83 PVYSAAWSPDSNKVLLTQA----KSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGG----------EDCKY  146 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~----~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i  146 (323)
                      ++.-.+.+|||+++++...    ....+++||....  +.++..+..  ..++|+|||++|++.+          .++.|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v   80 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYV   80 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence            3344467899999987642    2357999998776  444544433  4799999999887654          46788


Q ss_pred             EeeeEEeCC-CCeeeEeecCC-------CceeEEEEecCCCEEEEEeC--C-eEEEEeCCCCeee-ecCC----------
Q psy11524        147 KASFVWDTD-GRQLYSSLTHD-------HPISSLAWAPGGDMFAVGSY--N-TLRLCDKVGWSHS-LDKP----------  204 (323)
Q Consensus       147 ~~i~v~d~~-~~~~~~~~~~~-------~~v~~~~~~p~~~~l~~~~~--~-~i~i~d~~~~~~~-~~~~----------  204 (323)
                      +   +||+. ++.+..+..+.       .....++|+|+++.+++++.  + .+.+||..+.... ....          
T Consensus        81 ~---v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
T d2bbkh_          81 E---VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTA  157 (355)
T ss_dssp             E---EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEE
T ss_pred             E---EEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecC
Confidence            8   99996 45444443222       23456899999999887765  4 7889987644221 1110          


Q ss_pred             -----------------------------------CCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCC
Q psy11524        205 -----------------------------------DTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSH  248 (323)
Q Consensus       205 -----------------------------------~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~  248 (323)
                                                         +...+....+.+++..++.++.++ +++|++..++.........+
T Consensus       158 ~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  237 (355)
T d2bbkh_         158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEAL  237 (355)
T ss_dssp             TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESS
T ss_pred             CcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCc
Confidence                                               011122345556666677777788 99999887654321001111


Q ss_pred             ----------ccceEEEEEccCCC---------------CccceEEEEeCCCCeEEEecccccCCCCccceeEEEEeeCC
Q psy11524        249 ----------SHEITQLAVNQTGS---------------LQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDA  303 (323)
Q Consensus       249 ----------~~~v~~~~~~p~g~---------------~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  303 (323)
                                ......++++|++.               .....+.+|+......+..+..      ...+.+++|+|||
T Consensus       238 ~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~------~~~~~~~a~spDG  311 (355)
T d2bbkh_         238 TEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM------GHEIDSINVSQDE  311 (355)
T ss_dssp             CHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE------EEEECEEEECCSS
T ss_pred             ccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC------CCCEEEEEEcCCC
Confidence                      11233477788773               1112344444443333332222      5668899999999


Q ss_pred             C--eeEeeecCCeEEEEEee
Q psy11524        304 T--QIAGACANGSLLLGTII  321 (323)
Q Consensus       304 ~--~l~s~~~dg~i~~~~l~  321 (323)
                      +  ++++++.|+.|++||+.
T Consensus       312 ~~~l~v~~~~d~~i~v~D~~  331 (355)
T d2bbkh_         312 KPLLYALSTGDKTLYIHDAE  331 (355)
T ss_dssp             SCEEEEEETTTTEEEEEETT
T ss_pred             CeEEEEEECCCCEEEEEECC
Confidence            8  34577789999999974

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.66  E-value=1.2e-15  Score=124.88  Aligned_cols=224  Identities=8%  Similarity=-0.041  Sum_probs=143.6

Q ss_pred             EEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEee-ccCCCeEEEEECCCCCEE-EEEcCCCceEeeeEEeCC-CCeeeE
Q psy11524         87 AAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQ-AHDGLILKVAWCSSTDLI-LSGGEDCKYKASFVWDTD-GRQLYS  161 (323)
Q Consensus        87 ~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~i~v~d~~-~~~~~~  161 (323)
                      ++|+++++++++++.++ .|.+||+.+.  +.++. .+...+.+++|+|||+++ +++..++.|.   +||+. ++.+..
T Consensus         2 ~a~~~~~~~l~~~~~~~-~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~---~~d~~t~~~~~~   77 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPN-NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY---GIDLDTCKNTFH   77 (346)
T ss_dssp             CCCCTTCEEEEEEETTT-EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEE---EEETTTTEEEEE
T ss_pred             ccCCCCCcEEEEEcCCC-EEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEE---EEeCccCeeeee
Confidence            57899999999998885 9999999876  44444 455677899999999987 4556789999   99996 444444


Q ss_pred             eecCC------CceeEEEEecCCCEEEEEe------------CC-eEEEEeCCCC-eeeec--CCCCccEEEEEEcCCCC
Q psy11524        162 SLTHD------HPISSLAWAPGGDMFAVGS------------YN-TLRLCDKVGW-SHSLD--KPDTGSVYDLVWSNDAT  219 (323)
Q Consensus       162 ~~~~~------~~v~~~~~~p~~~~l~~~~------------~~-~i~i~d~~~~-~~~~~--~~~~~~v~~~~~~~~~~  219 (323)
                      +....      ..+..++|+|||+++++++            .+ .+.+||.... .....  ......+..+.++++++
T Consensus        78 ~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (346)
T d1jmxb_          78 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS  157 (346)
T ss_dssp             EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred             ecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE
Confidence            43221      2356899999999988765            23 6778886532 21111  11233456677777876


Q ss_pred             EEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCC------CccceEEEE----------------eCCCC
Q psy11524        220 QIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGS------LQERHVAFI----------------DKNRD  276 (323)
Q Consensus       220 ~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~------~~d~~l~~~----------------~~~~~  276 (323)
                      .+++   +. +.+|++.+++.+..+  ..+ .....+.++|++.      ..++.+..+                +....
T Consensus       158 ~~~~---~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (346)
T d1jmxb_         158 LYVA---GPDIYKMDVKTGKYTVAL--PLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG  231 (346)
T ss_dssp             EEEE---SSSEEEECTTTCCEEEEE--CST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred             EEEe---CCcceEEEccCCCEEEEE--ecC-CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCce
Confidence            5543   35 899999998887763  222 2334445566553      111122111                11122


Q ss_pred             eEEEecccc-----cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        277 LYLSMWSHS-----LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       277 ~~~~~~~~~-----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                      +.+|+....     ....|...+..+.+++++.+++.... +.|.+|++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~  280 (346)
T d1jmxb_         232 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLK  280 (346)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETT
T ss_pred             EEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECC
Confidence            334444332     12224667888999999988887664 578999864

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.64  E-value=1.4e-14  Score=124.21  Aligned_cols=137  Identities=18%  Similarity=0.227  Sum_probs=103.1

Q ss_pred             EEEEEcCCCCeEEEEeeCCeEEEEeCCCCce-e------EeeccCCCeEEEEECCCCCEEEEEcC---------CCceEe
Q psy11524         85 YSAAWSPDSNKVLLTQAKSLVIKPLSPNNKA-T------KWQAHDGLILKVAWCSSTDLILSGGE---------DCKYKA  148 (323)
Q Consensus        85 ~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~-~------~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~~  148 (323)
                      ..+.|.++++++..   +++.+++|+..+.. .      .+..|...|.++.|||||++|+.++.         ++.+. 
T Consensus        20 ~~~~W~~d~~~~~~---~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~-   95 (470)
T d2bgra1          20 YSLRWISDHEYLYK---QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD-   95 (470)
T ss_dssp             CCCEECSSSEEEEE---SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE-
T ss_pred             cCCEeCCCCEEEEE---cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEE-
Confidence            45789999987753   33578899987662 2      22345578999999999999998764         34455 


Q ss_pred             eeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeCCeEEEEeCCCCee-eecCCC------------------CccE
Q psy11524        149 SFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSH-SLDKPD------------------TGSV  209 (323)
Q Consensus       149 i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~~~-~~~~~~------------------~~~v  209 (323)
                        +||+.++.+..+..+...+..+.|||||+.+|....+.+++|+..+... +.....                  .+..
T Consensus        96 --l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~  173 (470)
T d2bgra1          96 --IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (470)
T ss_dssp             --EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             --EEECCCCcccccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCc
Confidence              9999988888899999999999999999999998877999999875433 222211                  1224


Q ss_pred             EEEEEcCCCCEEEEEecC
Q psy11524        210 YDLVWSNDATQIAGACAN  227 (323)
Q Consensus       210 ~~~~~~~~~~~l~~~~~d  227 (323)
                      ..+.|||||++|+....|
T Consensus       174 ~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         174 SALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             BCEEECTTSSEEEEEEEE
T ss_pred             cccEECCCCCccceeEec
Confidence            567899999999987643

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1.4e-12  Score=102.88  Aligned_cols=216  Identities=16%  Similarity=0.110  Sum_probs=141.0

Q ss_pred             cCCCCCEEEEEEcCCCCeEEEEeeCC--eEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCC-CceEeeeEEe
Q psy11524         78 LNVSPPVYSAAWSPDSNKVLLTQAKS--LVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGED-CKYKASFVWD  153 (323)
Q Consensus        78 ~~~~~~v~~~~~sp~~~~l~~~~~~~--~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~i~v~d  153 (323)
                      ..+...+...+|||||++||+.....  ..+++.+..+. ...+..+.+......|+|+|+.++..... +... +..+.
T Consensus        35 ~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~-~~~~~  113 (269)
T d2hqsa1          35 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLN-LYVMD  113 (269)
T ss_dssp             EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCE-EEEEE
T ss_pred             ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccc-eeecc
Confidence            34677889999999999999986544  24666665555 56677788888999999999988876543 3333 11333


Q ss_pred             CCCCeeeEeecCCCceeEEEEecCCCEEEEEeC--C--eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-
Q psy11524        154 TDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY--N--TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-  228 (323)
Q Consensus       154 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-  228 (323)
                      ....................+++++..++..+.  +  .+.+.++.+.................|+|+++.++..+.++ 
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~  193 (269)
T d2hqsa1         114 LASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG  193 (269)
T ss_dssp             TTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred             cccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCC
Confidence            333333444444555566678888877666554  3  67777777665555555677788899999999988877654 


Q ss_pred             ---EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCC---CeEEEecccc---cCCCCccceeEEEE
Q psy11524        229 ---IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNR---DLYLSMWSHS---LDKPDTGSVYDLVW  299 (323)
Q Consensus       229 ---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~---~~~~~~~~~~---~~~~~~~~v~~~~~  299 (323)
                         +.+.|...+....    ...........|+|||    +.|+.....+   .++++++...   ......+.+...+|
T Consensus       194 ~~~i~~~~~~~~~~~~----~~~~~~~~~p~~SPDG----~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~W  265 (269)
T d2hqsa1         194 QQHIAKQDLATGGVQV----LSSTFLDETPSLAPNG----TMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAW  265 (269)
T ss_dssp             CEEEEEEETTTCCEEE----CCCSSSCEEEEECTTS----SEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEE
T ss_pred             ceeeeEeecccccceE----eecCccccceEECCCC----CEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEe
Confidence               4555655554322    3445567788999999    5555443322   2345555443   11122566788899


Q ss_pred             eeC
Q psy11524        300 SSD  302 (323)
Q Consensus       300 s~~  302 (323)
                      ||-
T Consensus       266 SP~  268 (269)
T d2hqsa1         266 SPY  268 (269)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            983

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=9.2e-12  Score=98.07  Aligned_cols=209  Identities=9%  Similarity=0.044  Sum_probs=138.0

Q ss_pred             EEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEE
Q psy11524        105 VIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAV  183 (323)
Q Consensus       105 ~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  183 (323)
                      .|++.|..+. ...+..+...+...+|||||+.||..........+++.+..+.....+..+........|+|+|+.++.
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~   99 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF   99 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeE
Confidence            5777777665 666777788899999999999999876655433444778887777788888888899999999999888


Q ss_pred             EeC--C--eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEe-cCc---EEEEEcCCCceeeeecCCCCccceEEE
Q psy11524        184 GSY--N--TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGAC-ANV---IHIFDISSSSSSNVTAPLSHSHEITQL  255 (323)
Q Consensus       184 ~~~--~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~---i~iwd~~~~~~~~~~~~~~~~~~v~~~  255 (323)
                      ...  +  .+..+.....................++++++.++..+ .++   |.+.+...+....   ...........
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~---~~~~~~~~~~~  176 (269)
T d2hqsa1         100 ALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR---ITWEGSQNQDA  176 (269)
T ss_dssp             EECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE---CCCSSSEEEEE
T ss_pred             eeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeeccccccee---eeccccccccc
Confidence            776  3  33333333333344444555566777888777655544 344   6666766655443   35556677888


Q ss_pred             EEccCCCCccceEEEE-eCCCCeEEEecccc----cCCCCccceeEEEEeeCCCeeEeeecC---CeEEEEEe
Q psy11524        256 AVNQTGSLQERHVAFI-DKNRDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIAGACAN---GSLLLGTI  320 (323)
Q Consensus       256 ~~~p~g~~~d~~l~~~-~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~d---g~i~~~~l  320 (323)
                      .|+|++    ..+... ...+...++.....    ....+........|||||+.|+-.+..   ..|+++++
T Consensus       177 ~~spdg----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~  245 (269)
T d2hqsa1         177 DVSSDG----KFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVST  245 (269)
T ss_dssp             EECTTS----SEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             cccccc----ceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence            999998    455444 44444444443321    111224566788999999988744432   34555554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=2.9e-13  Score=111.19  Aligned_cols=225  Identities=10%  Similarity=0.060  Sum_probs=136.8

Q ss_pred             eEeccCCcceeeeeec------c--ccc-cccceeeecCCCCCEEEEEEcCCCCeEEEEee---------CCeEEEEeCC
Q psy11524         50 YPISPYISVLHSYAAS------H--SWP-QALSLCRTLNVSPPVYSAAWSPDSNKVLLTQA---------KSLVIKPLSP  111 (323)
Q Consensus        50 ~~~~~~~~~~~~~~~~------~--~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---------~~~~v~~~~~  111 (323)
                      .+.+||++.++.....      .  .|| .+.++..++. .+....++|||||++|++++.         .++.|++||.
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~-~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~   85 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-GGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP   85 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-ECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE-CCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence            3456777665422111      0  244 3445555553 223337999999999987642         2368999998


Q ss_pred             CCc--eeEeecc-------CCCeEEEEECCCCCEEEEEc--CCCceEeeeEEeCCCC-eeeEeecC--------------
Q psy11524        112 NNK--ATKWQAH-------DGLILKVAWCSSTDLILSGG--EDCKYKASFVWDTDGR-QLYSSLTH--------------  165 (323)
Q Consensus       112 ~~~--~~~~~~~-------~~~v~~~~~~~~~~~l~~~~--~d~~i~~i~v~d~~~~-~~~~~~~~--------------  165 (323)
                      .+.  ...+..+       ......++|+|++++++.++  .+..+.   +|+.... .+..+...              
T Consensus        86 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (355)
T d2bbkh_          86 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVG---VVDLEGKAFKRMLDVPDCYHIFPTAPDTFF  162 (355)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEE---EEETTTTEEEEEEECCSEEEEEEEETTEEE
T ss_pred             CCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceee---eeecCCCcEeeEEecCCcceEeecCCcceE
Confidence            775  2333222       12335689999999887765  355667   8887432 22222110              


Q ss_pred             -------------------------------CCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecCC---C-----
Q psy11524        166 -------------------------------DHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDKP---D-----  205 (323)
Q Consensus       166 -------------------------------~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~---~-----  205 (323)
                                                     ...+....+.+++..++.++.+ .+++|++.+........   +     
T Consensus       163 ~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  242 (355)
T d2bbkh_         163 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAER  242 (355)
T ss_dssp             EEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHH
T ss_pred             EEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceE
Confidence                                           1112234455556666666665 88899877543322111   1     


Q ss_pred             -----CccEEEEEEcCCCCEEEEEecC----------c-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccce-E
Q psy11524        206 -----TGSVYDLVWSNDATQIAGACAN----------V-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERH-V  268 (323)
Q Consensus       206 -----~~~v~~~~~~~~~~~l~~~~~d----------~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~-l  268 (323)
                           ......++++|++..++....+          . |.+||..+++.+..+   .+...+.+++|+|||+   .. +
T Consensus       243 ~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~---~~~~~~~~~a~spDG~---~~l~  316 (355)
T d2bbkh_         243 ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF---EMGHEIDSINVSQDEK---PLLY  316 (355)
T ss_dssp             HTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE---EEEEEECEEEECCSSS---CEEE
T ss_pred             eeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEe---cCCCCEEEEEEcCCCC---eEEE
Confidence                 1223458899999987765432          4 899999999988772   3445688999999982   22 3


Q ss_pred             EEEeCCCCeEEEeccc
Q psy11524        269 AFIDKNRDLYLSMWSH  284 (323)
Q Consensus       269 ~~~~~~~~~~~~~~~~  284 (323)
                      +....++.+.+|+..+
T Consensus       317 v~~~~d~~i~v~D~~t  332 (355)
T d2bbkh_         317 ALSTGDKTLYIHDAES  332 (355)
T ss_dssp             EEETTTTEEEEEETTT
T ss_pred             EEECCCCEEEEEECCC
Confidence            3455678889998876

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.53  E-value=6.7e-12  Score=103.65  Aligned_cols=156  Identities=12%  Similarity=-0.034  Sum_probs=110.9

Q ss_pred             CCCCCEEEEEEcCCCCeEEEEee----CCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcC----------
Q psy11524         79 NVSPPVYSAAWSPDSNKVLLTQA----KSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGE----------  142 (323)
Q Consensus        79 ~~~~~v~~~~~sp~~~~l~~~~~----~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------  142 (323)
                      .+..++.+++++|||+++++...    ..+.+++||....  +..+..+..  ..++|+|||++|++++.          
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCccccccc
Confidence            37888999999999999987632    2257999987655  445554443  37999999999988753          


Q ss_pred             CCceEeeeEEeCC-CCeeeEeecCCCc-------eeEEEEecCCCEEEEEeC--C-eEEEEeCCCCeeeecCCCCccEEE
Q psy11524        143 DCKYKASFVWDTD-GRQLYSSLTHDHP-------ISSLAWAPGGDMFAVGSY--N-TLRLCDKVGWSHSLDKPDTGSVYD  211 (323)
Q Consensus       143 d~~i~~i~v~d~~-~~~~~~~~~~~~~-------v~~~~~~p~~~~l~~~~~--~-~i~i~d~~~~~~~~~~~~~~~v~~  211 (323)
                      ++.|.   +||.. ++.+..+..+...       ...+.|+|+++.+++...  + .+.+|+........   +.....+
T Consensus        96 ~~~v~---v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  169 (373)
T d2madh_          96 TDYVE---VFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQ---LLSSPTC  169 (373)
T ss_pred             ceEEE---EEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEE---Eecccee
Confidence            56788   99996 5555555444332       245788999888766553  3 78888876543322   2234678


Q ss_pred             EEEcCCCCEE-EEEecCc-EEEEEcCCCceeee
Q psy11524        212 LVWSNDATQI-AGACANV-IHIFDISSSSSSNV  242 (323)
Q Consensus       212 ~~~~~~~~~l-~~~~~d~-i~iwd~~~~~~~~~  242 (323)
                      +.++|+|+.+ ++.+.|+ +.+||...++....
T Consensus       170 ~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~  202 (373)
T d2madh_         170 YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAG  202 (373)
T ss_pred             EEEecCCCcEEEEEcCCCeEEEEEcCCceeeEE
Confidence            8999998765 5677888 99999988776654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.51  E-value=3e-11  Score=99.54  Aligned_cols=259  Identities=9%  Similarity=-0.007  Sum_probs=151.1

Q ss_pred             cceeEeeEeccCCcceeeeeeccccccccceee--ecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEee--
Q psy11524         44 DGTVINYPISPYISVLHSYAASHSWPQALSLCR--TLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQ--  119 (323)
Q Consensus        44 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~--  119 (323)
                      .+.|+.+.|.++...+             .+.+  .+.....+..|+|+|++++|+++.......+..+..+......  
T Consensus        13 ~~~i~~~~fd~~~~~l-------------~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~   79 (365)
T d1jofa_          13 PGAIFTVQFDDEKLTC-------------KLIKRTEIPQDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASH   79 (365)
T ss_dssp             SCEEEEEEEETTTTEE-------------EEEEEEECCTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEE
T ss_pred             CCCEEEEEEcCCCCeE-------------EEeeeeeccCCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeee
Confidence            3457777777765322             1222  2335666778999999999988765543344344333332222  


Q ss_pred             ccCCCeEEEEECCCCCEE--EEEc-CCCceEeeeEEeCC--C------------Ce---eeE-eecCCCceeEEEEecCC
Q psy11524        120 AHDGLILKVAWCSSTDLI--LSGG-EDCKYKASFVWDTD--G------------RQ---LYS-SLTHDHPISSLAWAPGG  178 (323)
Q Consensus       120 ~~~~~v~~~~~~~~~~~l--~~~~-~d~~i~~i~v~d~~--~------------~~---~~~-~~~~~~~v~~~~~~p~~  178 (323)
                      ........+.++++++.+  +++. ..+.+.   .+.+.  +            +.   ... .......+.++.|+|||
T Consensus        80 ~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG  156 (365)
T d1jofa_          80 PIGGHPRANDADTNTRAIFLLAAKQPPYAVY---ANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE  156 (365)
T ss_dssp             ECCSSGGGGCTTSCCEEEEEEECSSTTCCEE---EEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred             cCCCCcEEEEECCCCCEEEEEEecCCCCEEE---EeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCC
Confidence            223345567888888743  3332 234444   43321  1            11   111 11223357899999999


Q ss_pred             CEEEEEeC--CeEEEEeCC--CCeee----ecCCCCccEEEEEEcCCCCEEEEEecC-c-EEEEEcCCCceeee-----e
Q psy11524        179 DMFAVGSY--NTLRLCDKV--GWSHS----LDKPDTGSVYDLVWSNDATQIAGACAN-V-IHIFDISSSSSSNV-----T  243 (323)
Q Consensus       179 ~~l~~~~~--~~i~i~d~~--~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d-~-i~iwd~~~~~~~~~-----~  243 (323)
                      +++++++.  |.|.+|+..  +....    .........+.++|+|+++++++..+. + |.+|++..++....     .
T Consensus       157 ~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~  236 (365)
T d1jofa_         157 TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSF  236 (365)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             CEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeee
Confidence            99998887  489888754  22111    122235678999999999998777764 4 99999876543211     0


Q ss_pred             cC------------CCCccceEEEEEccCCCCccceEEEEeCC-C-----CeEEEecccc----------cCCCCcccee
Q psy11524        244 AP------------LSHSHEITQLAVNQTGSLQERHVAFIDKN-R-----DLYLSMWSHS----------LDKPDTGSVY  295 (323)
Q Consensus       244 ~~------------~~~~~~v~~~~~~p~g~~~d~~l~~~~~~-~-----~~~~~~~~~~----------~~~~~~~~v~  295 (323)
                      .+            .........+.++|+|    +.+.+.+.. .     .+..+.+...          .....+....
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~i~~spdG----~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~  312 (365)
T d1jofa_         237 PLIPPGIPDRDPETGKGLYRADVCALTFSG----KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSN  312 (365)
T ss_dssp             ESSCTTCCCBCTTTSSBSEEEEEEEECTTS----SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCC
T ss_pred             ccccccccccccccccccCCccceEECCCC----CEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCcc
Confidence            00            0122245678999999    666554321 1     1333332221          0011234567


Q ss_pred             EEEEee-CCCeeEee-ecCCeEEEEEeec
Q psy11524        296 DLVWSS-DATQIAGA-CANGSLLLGTIIQ  322 (323)
Q Consensus       296 ~~~~s~-~g~~l~s~-~~dg~i~~~~l~~  322 (323)
                      +++++| +|++|+.+ ..++.|.+|++-+
T Consensus       313 ~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         313 AVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             EEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence            899998 78977655 5779999998754

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.45  E-value=1e-11  Score=102.56  Aligned_cols=223  Identities=11%  Similarity=0.022  Sum_probs=126.7

Q ss_pred             EEEEcCCCCeEEEEee---------CCeEEEEeCCCCc--eeEeeccC-------CCeEEEEECCCCCEEEEEc-CCCce
Q psy11524         86 SAAWSPDSNKVLLTQA---------KSLVIKPLSPNNK--ATKWQAHD-------GLILKVAWCSSTDLILSGG-EDCKY  146 (323)
Q Consensus        86 ~~~~sp~~~~l~~~~~---------~~~~v~~~~~~~~--~~~~~~~~-------~~v~~~~~~~~~~~l~~~~-~d~~i  146 (323)
                      .++|+|||++|++.+.         .++.|.+||..+.  ...+..+.       .....++|+|||++|+++. .++.+
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v  148 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence            6899999999998752         2357999998765  33333221       2234689999999988776 57899


Q ss_pred             EeeeEEeCCCC-eeeEeecCCCceeEEEEecC-CCEEEEEeCC-eEEEEeCCCCee-------eecCCCCccEEEEEEcC
Q psy11524        147 KASFVWDTDGR-QLYSSLTHDHPISSLAWAPG-GDMFAVGSYN-TLRLCDKVGWSH-------SLDKPDTGSVYDLVWSN  216 (323)
Q Consensus       147 ~~i~v~d~~~~-~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~~-~i~i~d~~~~~~-------~~~~~~~~~v~~~~~~~  216 (323)
                      .   +||+... ....+..+....    +.|+ ...++..+.| .+.++++.....       .....+...+..+.+.+
T Consensus       149 ~---~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (368)
T d1mdah_         149 A---GLSVPGASDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANY  221 (368)
T ss_dssp             E---EEEETTTEEEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETT
T ss_pred             E---EEECCCCcEeEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeeccccc
Confidence            9   9999644 444443332221    1121 2233333333 555565432211       11222344556677888


Q ss_pred             CCCEEEEEecCc-EEEEEcCCCceeeeecCCCC----------ccceEEEEEccCCCCccceEEEEeCCC---------C
Q psy11524        217 DATQIAGACANV-IHIFDISSSSSSNVTAPLSH----------SHEITQLAVNQTGSLQERHVAFIDKNR---------D  276 (323)
Q Consensus       217 ~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~~p~g~~~d~~l~~~~~~~---------~  276 (323)
                      ++..+.+.  ++ +++++...+...........          ......++++|++    +.+.+...++         .
T Consensus       222 ~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~----~~~~v~~~~~~~~~~~~~~~  295 (368)
T d1mdah_         222 PGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT----DGIMILTVEHSRSCLAAAEN  295 (368)
T ss_dssp             TTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT----TEEEEEEEECSSCTTSCEEE
T ss_pred             CcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCC----CEEEEEecCCCceeecCCce
Confidence            87655433  44 67777665544332101111          1122346778877    4443332111         2


Q ss_pred             eEEEecccc--cCC-CCccceeEEEEeeCCCe--eEeeecCCeEEEEEee
Q psy11524        277 LYLSMWSHS--LDK-PDTGSVYDLVWSSDATQ--IAGACANGSLLLGTII  321 (323)
Q Consensus       277 ~~~~~~~~~--~~~-~~~~~v~~~~~s~~g~~--l~s~~~dg~i~~~~l~  321 (323)
                      +.+|+..+.  +.. .+...+.+++|+|||+.  ++++..|+.|++||..
T Consensus       296 v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~  345 (368)
T d1mdah_         296 TSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             EEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             EEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence            444554432  000 12567889999999973  4577789999999964

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.44  E-value=2e-10  Score=89.93  Aligned_cols=230  Identities=10%  Similarity=0.007  Sum_probs=145.3

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEeec--cCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCC
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQA--HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGR  157 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~  157 (323)
                      +.-...+++++++|...++.....+.+..++..+.......  .......++++++++.+++....+.++   +++....
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~---~~~~~~~   88 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVT---LAAGSNN   88 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEE---ECTTCSC
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceee---eeeeccc
Confidence            44567899999999977665555567777776655332221  123457889999999877776666666   6655432


Q ss_pred             eeeEeecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeec-CCCCccEEEEEEcCCCCEEEEEecCc-EEEEEc
Q psy11524        158 QLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLD-KPDTGSVYDLVWSNDATQIAGACANV-IHIFDI  234 (323)
Q Consensus       158 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~  234 (323)
                      ...........+.++++.++++++++-..+ .+..++..+...... .........++++|+|+.+++...++ |..+|.
T Consensus        89 ~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~  168 (260)
T d1rwia_          89 QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEA  168 (260)
T ss_dssp             CEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECT
T ss_pred             eeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccc
Confidence            222222223557899999999877665444 788888765543322 22234567899999999777777777 999997


Q ss_pred             CCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCC-CCeEEEecccc---cC-CCCccceeEEEEeeCCCeeEee
Q psy11524        235 SSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKN-RDLYLSMWSHS---LD-KPDTGSVYDLVWSSDATQIAGA  309 (323)
Q Consensus       235 ~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~-~~~~~~~~~~~---~~-~~~~~~v~~~~~s~~g~~l~s~  309 (323)
                      ........  ..........+++.++|     .|.+.+.. +.+..+.....   .. ...-....+|+++++|+++++-
T Consensus       169 ~~~~~~~~--~~~~~~~p~gi~~d~~g-----~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad  241 (260)
T d1rwia_         169 ESNNQVVL--PFTDITAPWGIAVDEAG-----TVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVAD  241 (260)
T ss_dssp             TTCCEEEC--CCSSCCSEEEEEECTTC-----CEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEE
T ss_pred             ccceeeee--eccccCCCccceeeeee-----eeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEE
Confidence            65543332  23344566889999986     35555543 33444443332   11 1112456899999999988877


Q ss_pred             ecCCeEEEEE
Q psy11524        310 CANGSLLLGT  319 (323)
Q Consensus       310 ~~dg~i~~~~  319 (323)
                      ..+++|+..+
T Consensus       242 ~~~~rI~~i~  251 (260)
T d1rwia_         242 RGNDRVVKLT  251 (260)
T ss_dssp             GGGTEEEEEC
T ss_pred             CCCCEEEEEe
Confidence            7777776544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.43  E-value=1.9e-12  Score=107.53  Aligned_cols=227  Identities=7%  Similarity=-0.026  Sum_probs=137.8

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEee-ccCCCeEEEEECCCCC--EEEEEcCCCceE-------
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQ-AHDGLILKVAWCSSTD--LILSGGEDCKYK-------  147 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~-~~~~~v~~~~~~~~~~--~l~~~~~d~~i~-------  147 (323)
                      |.........+|||++|++....+..|.++|+...  ...+. .+...+..++|+|+|+  +++..+.+ .+.       
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~-~v~~~~dg~~  148 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEF-VIPQPNDGTD  148 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECS-CEESSCSSSC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCC-cccccCcccc
Confidence            55566667788999999988777779999998865  22222 3567889999999998  44443332 221       


Q ss_pred             --------eeeEEeCCC-CeeeEeecCCCceeEEEEecCCCEEEEEeCC--e--------------E-------------
Q psy11524        148 --------ASFVWDTDG-RQLYSSLTHDHPISSLAWAPGGDMFAVGSYN--T--------------L-------------  189 (323)
Q Consensus       148 --------~i~v~d~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~--~--------------i-------------  189 (323)
                              .+..+|... +...++.. ......++|+|+|+++++++.+  .              +             
T Consensus       149 ~~~~~~~~~~~~iD~~t~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~  227 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETMDVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVK  227 (441)
T ss_dssp             CCGGGEEEEEEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHH
T ss_pred             cccccccceEEeecCccceeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEec
Confidence                    112466543 33333332 3457889999999998877642  1              1             


Q ss_pred             -------------EEEeCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEe-cCc-EEEEEcCCCceee--------eec-
Q psy11524        190 -------------RLCDKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGAC-ANV-IHIFDISSSSSSN--------VTA-  244 (323)
Q Consensus       190 -------------~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~--------~~~-  244 (323)
                                   .+++.... ....+. -......+.++|||+++++++ .++ +.+||+++.+...        .+. 
T Consensus       228 dGk~~~v~~~~v~vvd~~~~~~v~~~IP-vgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~  306 (441)
T d1qnia2         228 AGNFKTIGDSKVPVVDGRGESEFTRYIP-VPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVA  306 (441)
T ss_dssp             TTCCBCCTTCCCCEEECSSSCSSEEEEC-CBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE
T ss_pred             CCCEEEeCCCCcEEEEcccCCceEEEEe-CCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEe
Confidence                         12222211 112222 233467799999999887654 566 9999986532110        000 


Q ss_pred             CCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc-------------------cCCCCccceeEEEEeeCCCe
Q psy11524        245 PLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS-------------------LDKPDTGSVYDLVWSSDATQ  305 (323)
Q Consensus       245 ~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~-------------------~~~~~~~~v~~~~~s~~g~~  305 (323)
                      .....-.....+|.++|    ....+...+..+..|++...                   -..+|...+.+.+++|||++
T Consensus       307 ~~~~glgplh~~fd~~g----~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~  382 (441)
T d1qnia2         307 EPELGLGPLHTTFDGRG----NAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKW  382 (441)
T ss_dssp             CCBCCSCEEEEEECSSS----EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCE
T ss_pred             ecccccCcccceecCCc----eEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcE
Confidence            01111123445788887    44444445555555554321                   12456777788889999999


Q ss_pred             eEee---ecCC
Q psy11524        306 IAGA---CANG  313 (323)
Q Consensus       306 l~s~---~~dg  313 (323)
                      |+++   +.|+
T Consensus       383 l~s~~k~s~dr  393 (441)
T d1qnia2         383 LVVLSKFSKDR  393 (441)
T ss_dssp             EEEEESCCGGG
T ss_pred             EEecCcccccc
Confidence            9999   5554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.40  E-value=3.2e-09  Score=83.81  Aligned_cols=229  Identities=10%  Similarity=0.105  Sum_probs=149.5

Q ss_pred             CEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeec------cCCCeEEEEECCCC-CEEEE-EcCCCceEeeeEEe
Q psy11524         83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQA------HDGLILKVAWCSST-DLILS-GGEDCKYKASFVWD  153 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~------~~~~v~~~~~~~~~-~~l~~-~~~d~~i~~i~v~d  153 (323)
                      ....++++|+|+.+++ ...+..|++|+.++. +..+..      .......+++.++. ..+++ .+.++.|.   .++
T Consensus        24 ~P~gvavd~dg~i~Va-D~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~---~~~   99 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVA-DTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ---IYN   99 (279)
T ss_dssp             CEEEEEECTTCCEEEE-EGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE---EEC
T ss_pred             CccEEEEcCCCCEEEE-ECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccc---ccc
Confidence            4689999999986554 444468999998876 333321      11234566665553 34433 34456777   888


Q ss_pred             CCCCeeeEeec-CCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeec--CCCCccEEEEEEcCCCCEEEEEecCc-
Q psy11524        154 TDGRQLYSSLT-HDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLD--KPDTGSVYDLVWSNDATQIAGACANV-  228 (323)
Q Consensus       154 ~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~-  228 (323)
                      ..+.....+.. .......+++.++|+++++.... .+.+++..+..+...  ..+......+++.++|+.+++....+ 
T Consensus       100 ~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~  179 (279)
T d1q7fa_         100 QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC  179 (279)
T ss_dssp             TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred             ccccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccccc
Confidence            88877776643 34567889999999877776664 899999887655432  34556788999999998777777777 


Q ss_pred             EEEEEcCCCceeeeecCCCCccceEEEEEccCCC------CccceEEEEeCCCCeEEEecccccCCCCccceeEEEEeeC
Q psy11524        229 IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGS------LQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSD  302 (323)
Q Consensus       229 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~------~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  302 (323)
                      |++||. +++.+.++-..+.......+++.|+|+      ..+..|.+++.+|.. +..+..   .........+++.||
T Consensus       180 V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~-~~~~~~---~~~~~~p~~vav~~d  254 (279)
T d1q7fa_         180 VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQL-ISALES---KVKHAQCFDVALMDD  254 (279)
T ss_dssp             EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCE-EEEEEE---SSCCSCEEEEEEETT
T ss_pred             eeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCE-EEEEeC---CCCCCCEeEEEEeCC
Confidence            999995 566666632233445678899999984      111234444444331 111111   111345789999999


Q ss_pred             CCeeEeeecCCeEEEEEee
Q psy11524        303 ATQIAGACANGSLLLGTII  321 (323)
Q Consensus       303 g~~l~s~~~dg~i~~~~l~  321 (323)
                      |.+++ ++.+++|++|+..
T Consensus       255 G~l~V-~~~n~~v~~fr~~  272 (279)
T d1q7fa_         255 GSVVL-ASKDYRLYIYRYV  272 (279)
T ss_dssp             TEEEE-EETTTEEEEEECS
T ss_pred             CcEEE-EeCCCeEEEEEee
Confidence            97554 5678999999864

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.39  E-value=2.6e-10  Score=91.35  Aligned_cols=230  Identities=13%  Similarity=0.107  Sum_probs=143.5

Q ss_pred             ceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEE
Q psy11524         73 SLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVW  152 (323)
Q Consensus        73 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~  152 (323)
                      ++...+.....+..++++|||+.+++...+ +.|+.++..+....+......+.+++|+|||+++++...++.+.   .+
T Consensus        19 ~v~~~~p~~~~~e~iAv~pdG~l~vt~~~~-~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~---~~   94 (302)
T d2p4oa1          19 KIITSFPVNTFLENLASAPDGTIFVTNHEV-GEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIP---VV   94 (302)
T ss_dssp             EEEEEECTTCCEEEEEECTTSCEEEEETTT-TEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCE---EE
T ss_pred             cEEEECCCCCCcCCEEECCCCCEEEEeCCC-CEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEE---EE
Confidence            334455555578899999999977665444 69999998888777777888999999999999998888888888   77


Q ss_pred             eCC--CCeeeEe--ecCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeec-----------CCCCccEEEEEEcC
Q psy11524        153 DTD--GRQLYSS--LTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLD-----------KPDTGSVYDLVWSN  216 (323)
Q Consensus       153 d~~--~~~~~~~--~~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~-----------~~~~~~v~~~~~~~  216 (323)
                      +..  ......+  .........+++.++++++++.+.+ .+..+|..+......           .........+.++.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~  174 (302)
T d2p4oa1          95 SLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG  174 (302)
T ss_dssp             EEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET
T ss_pred             EecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC
Confidence            763  2222222  2234567899999999877776664 888888775432211           11122356666654


Q ss_pred             CCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEe-CCCCeEEEecccc---cCC--C
Q psy11524        217 DATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFID-KNRDLYLSMWSHS---LDK--P  289 (323)
Q Consensus       217 ~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~-~~~~~~~~~~~~~---~~~--~  289 (323)
                      + ..+++.+..+ |+.++.....................+++.++|.     +.+.. .++.+..++....   +..  .
T Consensus       175 ~-~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~-----l~va~~~~~~V~~i~p~G~~~~~~~~~~  248 (302)
T d2p4oa1         175 N-FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN-----LYGATHIYNSVVRIAPDRSTTIIAQAEQ  248 (302)
T ss_dssp             T-EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC-----EEEECBTTCCEEEECTTCCEEEEECGGG
T ss_pred             C-ceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCC-----EEEEEcCCCcEEEECCCCCEEEEEecCC
Confidence            3 2334444555 8888876544332210111223456789999873     33322 3344444433321   111  1


Q ss_pred             CccceeEEEE---eeCCCeeEeeecC
Q psy11524        290 DTGSVYDLVW---SSDATQIAGACAN  312 (323)
Q Consensus       290 ~~~~v~~~~~---s~~g~~l~s~~~d  312 (323)
                      .-...++++|   ++|++.|+.++..
T Consensus       249 ~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         249 GVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCceEEEEcCCCCCCCEEEEECCC
Confidence            1345789999   6788888765543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.33  E-value=2.4e-11  Score=103.68  Aligned_cols=147  Identities=14%  Similarity=0.143  Sum_probs=107.4

Q ss_pred             EEEEECCCCCEEEEEcCCCceEeeeEEeCCCCee-eEee-----cCCCceeEEEEecCCCEEEEEeC----------CeE
Q psy11524        126 LKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQL-YSSL-----THDHPISSLAWAPGGDMFAVGSY----------NTL  189 (323)
Q Consensus       126 ~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~-~~~~-----~~~~~v~~~~~~p~~~~l~~~~~----------~~i  189 (323)
                      ..+.|.++++++..  .++.+.   +||+.+... ..+.     .+...|.++.|||||++|++++.          +.+
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~   94 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNIL---VFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEE---EEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEE---EEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceE
Confidence            35789999987764  477888   999964433 3232     34467999999999999998753          267


Q ss_pred             EEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCcEEEEEcCCCceeeeecCCC-----------------Cccce
Q psy11524        190 RLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISSSSSSNVTAPLS-----------------HSHEI  252 (323)
Q Consensus       190 ~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~-----------------~~~~v  252 (323)
                      .+||+.+.....+..+...+..+.|||||++||......+++|+..+++..+.. ..+                 ..+..
T Consensus        95 ~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t-~~~~~~~~~~g~~d~~~~~~~~~~~  173 (470)
T d2bgra1          95 DIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRIT-WTGKEDIIYNGITDWVYEEEVFSAY  173 (470)
T ss_dssp             EEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECC-SCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EEEECCCCcccccccCCccccccccccCcceeeEeecccceEEECCCCceeeee-eccCCCcccccccceeeeeeecCCc
Confidence            899999888888888899999999999999999865433999999988766541 111                 11234


Q ss_pred             EEEEEccCCCCccceEEEEeCCCC-eEEEec
Q psy11524        253 TQLAVNQTGSLQERHVAFIDKNRD-LYLSMW  282 (323)
Q Consensus       253 ~~~~~~p~g~~~d~~l~~~~~~~~-~~~~~~  282 (323)
                      ..+.|||||    +.|+....+.. +..+.+
T Consensus       174 ~~~~wSPDG----k~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         174 SALWWSPNG----TFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             BCEEECTTS----SEEEEEEEECTTCCEEEE
T ss_pred             cccEECCCC----CccceeEecCCcCceEEE
Confidence            567899999    78887765433 444443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.26  E-value=2.4e-10  Score=94.11  Aligned_cols=195  Identities=10%  Similarity=-0.036  Sum_probs=114.2

Q ss_pred             eeEeccCCcceeeeee------cc-------ccc-cccceeeecC--------CCCCEEEEEEcCCCCeEEEEeeCCeEE
Q psy11524         49 NYPISPYISVLHSYAA------SH-------SWP-QALSLCRTLN--------VSPPVYSAAWSPDSNKVLLTQAKSLVI  106 (323)
Q Consensus        49 ~~~~~~~~~~~~~~~~------~~-------~~~-~~~~~~~~~~--------~~~~v~~~~~sp~~~~l~~~~~~~~~v  106 (323)
                      .+.++|||+.++..-.      .|       .|| .+.+....+.        .......++|+|||++|+++..+.+.+
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v  148 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence            5789999987764322      12       244 3333333332        122334689999999999887766799


Q ss_pred             EEeCCCCc--eeEeeccC-------CCeEEEEECCCCCEEEEEcCCCceE------------------------------
Q psy11524        107 KPLSPNNK--ATKWQAHD-------GLILKVAWCSSTDLILSGGEDCKYK------------------------------  147 (323)
Q Consensus       107 ~~~~~~~~--~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~d~~i~------------------------------  147 (323)
                      .+||....  ...+..+.       +....+.+++||+.++....++...                              
T Consensus       149 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  228 (368)
T d1mdah_         149 AGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA  228 (368)
T ss_dssp             EEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC
T ss_pred             EEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe
Confidence            99997765  22222221       2223455566665544433222111                              


Q ss_pred             ---eeeEEeCCCCeeeEeec-------------CCCceeEEEEecCCCEEEEEeC---------C-eEEEEeCCCCeeee
Q psy11524        148 ---ASFVWDTDGRQLYSSLT-------------HDHPISSLAWAPGGDMFAVGSY---------N-TLRLCDKVGWSHSL  201 (323)
Q Consensus       148 ---~i~v~d~~~~~~~~~~~-------------~~~~v~~~~~~p~~~~l~~~~~---------~-~i~i~d~~~~~~~~  201 (323)
                         .+++++........+..             .......++++|++..++....         . .+.+||..+.+...
T Consensus       229 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~  308 (368)
T d1mdah_         229 VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG  308 (368)
T ss_dssp             BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE
T ss_pred             cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeE
Confidence               01133332222111110             0112345788998887665532         1 58899988654443


Q ss_pred             cCCCCccEEEEEEcCCCCE-E-EEEecCc-EEEEEcCCCceeeee
Q psy11524        202 DKPDTGSVYDLVWSNDATQ-I-AGACANV-IHIFDISSSSSSNVT  243 (323)
Q Consensus       202 ~~~~~~~v~~~~~~~~~~~-l-~~~~~d~-i~iwd~~~~~~~~~~  243 (323)
                      ...+...+..++|+|||+. | +++..++ |++||..+++.+.++
T Consensus       309 ~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i  353 (368)
T d1mdah_         309 PISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             CCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred             EecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence            3345567889999999973 3 4556678 999999999999883

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=2.5e-08  Score=78.54  Aligned_cols=193  Identities=11%  Similarity=0.081  Sum_probs=136.9

Q ss_pred             CEEEEEEcCCC-CeEEEEeeCCeEEEEeCCCCc-eeEee-ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCee
Q psy11524         83 PVYSAAWSPDS-NKVLLTQAKSLVIKPLSPNNK-ATKWQ-AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQL  159 (323)
Q Consensus        83 ~v~~~~~sp~~-~~l~~~~~~~~~v~~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~  159 (323)
                      ....+++.++. ..+++.......|..++..+. ...+. ........+++.++|.++++....+.+.   +++.+++.+
T Consensus        71 ~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~---~~~~~g~~~  147 (279)
T d1q7fa_          71 YPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVI---IFDQNGNVL  147 (279)
T ss_dssp             SEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEE---EECTTSCEE
T ss_pred             ccccccccccccccceeccCCccccccccccccceeecCCCcccccceeccccCCcEEEEeeccceee---EeccCCcee
Confidence            34556665554 445544445567888887766 33332 3345678899999999888888788888   999988877


Q ss_pred             eEee--cCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeeecC--CCCccEEEEEEcCCCCEEEEEec-Cc-EEEE
Q psy11524        160 YSSL--THDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSLDK--PDTGSVYDLVWSNDATQIAGACA-NV-IHIF  232 (323)
Q Consensus       160 ~~~~--~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-d~-i~iw  232 (323)
                      ..+.  .+......+++.++++.+++.... .|++||..+.....+.  +.......++++|+|+.+++-.. +. |.+|
T Consensus       148 ~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f  227 (279)
T d1q7fa_         148 HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIF  227 (279)
T ss_dssp             EEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred             ecccccccccccceeeeccceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEE
Confidence            7663  344567889999999877666664 9999999887655442  24456889999999997776554 45 9999


Q ss_pred             EcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEEeccc
Q psy11524        233 DISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSH  284 (323)
Q Consensus       233 d~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~  284 (323)
                      + .+|+.+.++...........+++.|+|     .|.+.+.+..+.+|....
T Consensus       228 ~-~~G~~~~~~~~~~~~~~p~~vav~~dG-----~l~V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         228 T-QDGQLISALESKVKHAQCFDVALMDDG-----SVVLASKDYRLYIYRYVQ  273 (279)
T ss_dssp             C-TTSCEEEEEEESSCCSCEEEEEEETTT-----EEEEEETTTEEEEEECSC
T ss_pred             C-CCCCEEEEEeCCCCCCCEeEEEEeCCC-----cEEEEeCCCeEEEEEeee
Confidence            8 567776653223333467889999996     567778888888888765

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.22  E-value=4.4e-08  Score=78.65  Aligned_cols=226  Identities=8%  Similarity=0.022  Sum_probs=133.8

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCC----CceEeeeEEeC
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGED----CKYKASFVWDT  154 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~i~v~d~  154 (323)
                      ...+..++|.++|+ |.++....+.|+.++..+.  .............+++++||+++++...+    +.+.   ..+.
T Consensus        39 ~~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~---~~~~  114 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF---AATE  114 (319)
T ss_dssp             CCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE---EECT
T ss_pred             CcCcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEE---EEcC
Confidence            44567899999998 4445545578888887765  33344556678999999999987765432    2333   5555


Q ss_pred             CCCeeeEeecC---CCceeEEEEecCCCEEEEEeCC-------eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEE
Q psy11524        155 DGRQLYSSLTH---DHPISSLAWAPGGDMFAVGSYN-------TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGA  224 (323)
Q Consensus       155 ~~~~~~~~~~~---~~~v~~~~~~p~~~~l~~~~~~-------~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  224 (323)
                      .+..+......   ...+..+++.|+|++.++...+       .+..++..+.........-.....++|+|+++.|+.+
T Consensus       115 ~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyva  194 (319)
T d2dg1a1         115 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVT  194 (319)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             CCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEe
Confidence            55444443322   3357789999999877664321       3666666655444332233456889999999877665


Q ss_pred             e-cCc-EEEEEcCCC-ceeeee-----cCCCCccceEEEEEccCCC-----CccceEEEEeCCCCeE-EEecccccCCCC
Q psy11524        225 C-ANV-IHIFDISSS-SSSNVT-----APLSHSHEITQLAVNQTGS-----LQERHVAFIDKNRDLY-LSMWSHSLDKPD  290 (323)
Q Consensus       225 ~-~d~-i~iwd~~~~-~~~~~~-----~~~~~~~~v~~~~~~p~g~-----~~d~~l~~~~~~~~~~-~~~~~~~~~~~~  290 (323)
                      . ..+ |+.||+... ......     ...........+++.++|+     ...+.|..++.+|... .+.+.. ....+
T Consensus       195 d~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i~~P~-~~~~~  273 (319)
T d2dg1a1         195 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPG-RDEGH  273 (319)
T ss_dssp             EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTT-GGGTC
T ss_pred             cccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEEEEEeCCC-cCCCc
Confidence            4 455 999987642 211110     0111222356788888874     2233444444443311 111111 11122


Q ss_pred             ccceeEEEEeeCCCeeEeeec
Q psy11524        291 TGSVYDLVWSSDATQIAGACA  311 (323)
Q Consensus       291 ~~~v~~~~~s~~g~~l~s~~~  311 (323)
                      ...+.+++|.|++..+++...
T Consensus       274 ~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         274 MLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             SCBCCEEEECTTSCEEEEEEE
T ss_pred             CceeeeEEEeCCCCEEEEEcC
Confidence            346789999998877765543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.21  E-value=7.4e-10  Score=91.76  Aligned_cols=190  Identities=7%  Similarity=-0.064  Sum_probs=122.7

Q ss_pred             cCCCeEEEEECCCCCEEEEEc-CCCceEeeeEEeCCCCee-eEee-cCCCceeEEEEecCCCE--EEEEeCCeE------
Q psy11524        121 HDGLILKVAWCSSTDLILSGG-EDCKYKASFVWDTDGRQL-YSSL-THDHPISSLAWAPGGDM--FAVGSYNTL------  189 (323)
Q Consensus       121 ~~~~v~~~~~~~~~~~l~~~~-~d~~i~~i~v~d~~~~~~-~~~~-~~~~~v~~~~~~p~~~~--l~~~~~~~i------  189 (323)
                      |.........+|||++|++.. .+++|.   ++|++..+. ..+. .....+..++|+|+|+.  ++..+++.+      
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVa---vIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg  146 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVA---RIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDG  146 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEE---EEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSS
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEE---EEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcc
Confidence            334445555678999886654 678888   999975444 3333 34667899999999985  444443343      


Q ss_pred             ------------EEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecC------------------------------
Q psy11524        190 ------------RLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN------------------------------  227 (323)
Q Consensus       190 ------------~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------------------------  227 (323)
                                  ..+|..+............+..+.++|+|+++++.+.+                              
T Consensus       147 ~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~  226 (441)
T d1qnia2         147 TDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV  226 (441)
T ss_dssp             SCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred             cccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEe
Confidence                        34666544332221233457889999999999887644                              


Q ss_pred             -----------c-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEE-EeCCCCeEEEecccc--cCCC---
Q psy11524        228 -----------V-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAF-IDKNRDLYLSMWSHS--LDKP---  289 (323)
Q Consensus       228 -----------~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~-~~~~~~~~~~~~~~~--~~~~---  289 (323)
                                 + +.+++....+.+..  +... .....+.++|||    +++.+ ...++.+.+|++...  ....   
T Consensus       227 ~dGk~~~v~~~~v~vvd~~~~~~v~~~--IPvg-ksPhGv~vSPDG----kyl~~~~~~~~tvsv~d~~k~~~~~~~~~~  299 (441)
T d1qnia2         227 KAGNFKTIGDSKVPVVDGRGESEFTRY--IPVP-KNPHGLNTSPDG----KYFIANGKLSPTVSVIAIDKLDDLFEDKIE  299 (441)
T ss_dssp             HTTCCBCCTTCCCCEEECSSSCSSEEE--ECCB-SSCCCEEECTTS----CEEEEECTTSSBEEEEEGGGHHHHTTTSSC
T ss_pred             cCCCEEEeCCCCcEEEEcccCCceEEE--EeCC-CCccCceECCCC----CEEEEeCCcCCcEEEEEeehhhhHhhccCC
Confidence                       2 23333333334443  2222 345779999999    66655 567788999998663  1010   


Q ss_pred             C----------ccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        290 D----------TGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       290 ~----------~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                      +          .-.....+|+++|..+.+..-|..|..|++
T Consensus       300 ~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         300 LRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             GGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred             cceEEEeecccccCcccceecCCceEEEcccccceEEEecc
Confidence            0          122355689999998999999999999986

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.19  E-value=3e-09  Score=87.30  Aligned_cols=155  Identities=8%  Similarity=-0.033  Sum_probs=101.4

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCC--Ccee---Ee--eccCCCeEEEEECCCCCEEEEEc-CCCceEeeeE
Q psy11524         80 VSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPN--NKAT---KW--QAHDGLILKVAWCSSTDLILSGG-EDCKYKASFV  151 (323)
Q Consensus        80 ~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~--~~~~---~~--~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~i~v  151 (323)
                      ....+.++.|+|||++++++......|++|+..  +...   ..  .........++|+|+++++++.. .+++|.   +
T Consensus       143 ~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~---v  219 (365)
T d1jofa_         143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRIC---E  219 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEE---E
T ss_pred             CCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEE---E
Confidence            344688999999999999887544467776533  2221   11  22345789999999999876555 578888   9


Q ss_pred             EeCCCCe---eeEee-----------------cCCCceeEEEEecCCCEEEEEeC--C-----eEEEEeCCCC-ee----
Q psy11524        152 WDTDGRQ---LYSSL-----------------THDHPISSLAWAPGGDMFAVGSY--N-----TLRLCDKVGW-SH----  199 (323)
Q Consensus       152 ~d~~~~~---~~~~~-----------------~~~~~v~~~~~~p~~~~l~~~~~--~-----~i~i~d~~~~-~~----  199 (323)
                      |+++...   .....                 ........+.++|||++++++..  +     .|..|++... .+    
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~  299 (365)
T d1jofa_         220 YVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL  299 (365)
T ss_dssp             EEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE
T ss_pred             EEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEe
Confidence            9985322   11111                 01123567899999999888754  1     3777776421 11    


Q ss_pred             --eecCCCCccEEEEEEcC-CCCEEEEEecC-c-EEEEEcCCC
Q psy11524        200 --SLDKPDTGSVYDLVWSN-DATQIAGACAN-V-IHIFDISSS  237 (323)
Q Consensus       200 --~~~~~~~~~v~~~~~~~-~~~~l~~~~~d-~-i~iwd~~~~  237 (323)
                        ..........+.++++| +|++|+++..+ + |.+|++...
T Consensus       300 ~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         300 FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence              11122345678899998 89988887654 5 999987544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.18  E-value=4e-08  Score=78.67  Aligned_cols=231  Identities=8%  Similarity=0.031  Sum_probs=140.7

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeC------CeEEEEeCCCCceeEe-e-----ccCCCeEEEEECCCCCEEEEEcCCCceEe
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAK------SLVIKPLSPNNKATKW-Q-----AHDGLILKVAWCSSTDLILSGGEDCKYKA  148 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~------~~~v~~~~~~~~~~~~-~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  148 (323)
                      -.....++|.|+|+.+++....      ++.|..|+..+..... .     ...+....++|.++++.++++.....+. 
T Consensus        17 ~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~-   95 (314)
T d1pjxa_          17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL-   95 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE-
T ss_pred             CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEE-
Confidence            3445678999999877654221      2468888877653222 1     1123467899999999888887777787 


Q ss_pred             eeEEeCCCCeeeEeecC-C----CceeEEEEecCCCEEEEEeC----------------CeEEEEeCCCCeeeecCCCCc
Q psy11524        149 SFVWDTDGRQLYSSLTH-D----HPISSLAWAPGGDMFAVGSY----------------NTLRLCDKVGWSHSLDKPDTG  207 (323)
Q Consensus       149 i~v~d~~~~~~~~~~~~-~----~~v~~~~~~p~~~~l~~~~~----------------~~i~i~d~~~~~~~~~~~~~~  207 (323)
                        ..+.++.....+... .    ...+.+++.|+|++.++...                +.++.++..+....... .-.
T Consensus        96 --~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~-~~~  172 (314)
T d1pjxa_          96 --VVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDT-AFQ  172 (314)
T ss_dssp             --EEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEE-EES
T ss_pred             --EEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeC-Ccc
Confidence              888876654433221 1    13578999999988776432                13555555554333221 233


Q ss_pred             cEEEEEEcCCCC----EEEEE-ecCc-EEEEEcCCCceeeee----cCCC-CccceEEEEEccCCCCccceEEEEe-CCC
Q psy11524        208 SVYDLVWSNDAT----QIAGA-CANV-IHIFDISSSSSSNVT----APLS-HSHEITQLAVNQTGSLQERHVAFID-KNR  275 (323)
Q Consensus       208 ~v~~~~~~~~~~----~l~~~-~~d~-i~iwd~~~~~~~~~~----~~~~-~~~~v~~~~~~p~g~~~d~~l~~~~-~~~  275 (323)
                      ....++|+|++.    +|+.+ +..+ |..||+.....+...    .+.. .......+++.++|    + |.+.+ ..+
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G----n-lyVa~~~~g  247 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN----N-LLVANWGSS  247 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC----C-EEEEEETTT
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCC----c-EEEEEcCCC
Confidence            457899998764    45444 4556 888887543222210    0222 22345678898887    3 33333 345


Q ss_pred             CeEEEecccc----cCCCCccceeEEEEeeCCCee-EeeecCCeEEEEEe
Q psy11524        276 DLYLSMWSHS----LDKPDTGSVYDLVWSSDATQI-AGACANGSLLLGTI  320 (323)
Q Consensus       276 ~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l-~s~~~dg~i~~~~l  320 (323)
                      .+.+++....    ....+.....+++|.||++.| ++.+.+|+|...++
T Consensus       248 ~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         248 HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             EEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             EEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence            5667765543    122334678899999999755 56677788877665

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.15  E-value=2.6e-08  Score=78.10  Aligned_cols=219  Identities=10%  Similarity=0.086  Sum_probs=123.0

Q ss_pred             EEcCC--CCeEEEEeeCCeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEcC-CCc--eEeeeEEeCCCCeeeE
Q psy11524         88 AWSPD--SNKVLLTQAKSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGGE-DCK--YKASFVWDTDGRQLYS  161 (323)
Q Consensus        88 ~~sp~--~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--i~~i~v~d~~~~~~~~  161 (323)
                      ..|||  |+++++.+.+  .|++.++.+. .+.+..+.+.+...+|||||+.||.... ++.  ..+|++++..+.....
T Consensus         5 ~~sPdi~G~~v~f~~~~--dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCD--DLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEETT--EEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEeCC--cEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            46788  9999987544  6898888766 6678888888999999999999886542 222  2235588887776666


Q ss_pred             eecCC-------CceeEEEEecCCCEEEEEeC------C-eEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecC
Q psy11524        162 SLTHD-------HPISSLAWAPGGDMFAVGSY------N-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN  227 (323)
Q Consensus       162 ~~~~~-------~~v~~~~~~p~~~~l~~~~~------~-~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  227 (323)
                      +....       ......+|+|+|+.++....      . .+...+..+.......  ........+.+.+..++.....
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  160 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN--LGPATHILFADGRRVIGRNTFE  160 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC--SCSCSEEEEETTEEEEEESCSC
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec--CCccceeeecCCCeEEEeeccc
Confidence            64332       24567889999999887643      1 3555666655444332  2222233333333333332221


Q ss_pred             -----------c-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeEEE--ecccc----cCCC
Q psy11524        228 -----------V-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLS--MWSHS----LDKP  289 (323)
Q Consensus       228 -----------~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~--~~~~~----~~~~  289 (323)
                                 . ..............   ...........++++     ..+...+.++...+|  ++...    +.. 
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~d~~g~~~~~lt~-  231 (281)
T d1k32a2         161 LPHWKGYRGGTRGKIWIEVNSGAFKKI---VDMSTHVSSPVIVGH-----RIYFITDIDGFGQIYSTDLDGKDLRKHTS-  231 (281)
T ss_dssp             CTTSTTCCSTTCCEEEEEEETTEEEEE---ECCSSCCEEEEEETT-----EEEEEECTTSSCEEEEEETTSCSCEECCC-
T ss_pred             cceeeeeccCCcceeeeeccccceeec---cCCccccceeeeecc-----ccceecccccccceEEEeCCCCceEEeec-
Confidence                       1 22222222222221   222233344445544     344444444443333  33322    111 


Q ss_pred             CccceeEEEEeeCCCeeEeeecCCeEEEEEee
Q psy11524        290 DTGSVYDLVWSSDATQIAGACANGSLLLGTII  321 (323)
Q Consensus       290 ~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l~  321 (323)
                       ........|||||+.|+.. .++.|+++++.
T Consensus       232 -~~~~~~~~~SpDG~~I~f~-~~~~l~~~d~~  261 (281)
T d1k32a2         232 -FTDYYPRHLNTDGRRILFS-KGGSIYIFNPD  261 (281)
T ss_dssp             -CCSSCEEEEEESSSCEEEE-ETTEEEEECTT
T ss_pred             -CCCcccccCcCCCCEEEEE-eCCEEEEEECC
Confidence             1222345799999988764 46788887753

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.10  E-value=2e-07  Score=72.40  Aligned_cols=184  Identities=11%  Similarity=0.036  Sum_probs=122.1

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEee-ccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCee
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQ-AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQL  159 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~  159 (323)
                      ......++++++|+.++ +......+++++......... .....+.++++.++++++++-..+..+.   .++..+...
T Consensus        56 ~~~p~gvav~~~g~i~v-~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~---~~~~~~~~~  131 (260)
T d1rwia_          56 LYQPQGLAVDGAGTVYV-TDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVV---KLAAGSKTQ  131 (260)
T ss_dssp             CCSCCCEEECTTCCEEE-EETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEE---EECTTCSSC
T ss_pred             ccCceEEEEcCCCCEEE-eeeeeceeeeeeeccceeeeeeeeeeecccccccccceeEeecccccccc---cccccccee
Confidence            34567899999998655 445556777776554432222 2235678999999999887776677777   777765444


Q ss_pred             eEee-cCCCceeEEEEecCCCEEEEEeCC-eEEEEeCCCCeeee-cCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcC
Q psy11524        160 YSSL-THDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWSHSL-DKPDTGSVYDLVWSNDATQIAGACANV-IHIFDIS  235 (323)
Q Consensus       160 ~~~~-~~~~~v~~~~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~  235 (323)
                      .... ........++++|+|+.+++...+ .|..+|..+..... ..........++++++|+++++....+ |..++..
T Consensus       132 ~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~  211 (260)
T d1rwia_         132 TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  211 (260)
T ss_dssp             EECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTT
T ss_pred             eeeeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCC
Confidence            3332 223456789999999876666554 89999987654333 334456688999999998777777777 8888765


Q ss_pred             CCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCC
Q psy11524        236 SSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNR  275 (323)
Q Consensus       236 ~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~  275 (323)
                      .... ... ....-.....++++++|     .|.+.+..+
T Consensus       212 ~~~~-~~~-~~~~~~~P~~i~~d~~g-----~l~vad~~~  244 (260)
T d1rwia_         212 STTS-TVL-PFTGLNTPLAVAVDSDR-----TVYVADRGN  244 (260)
T ss_dssp             CSCC-EEC-CCCSCCCEEEEEECTTC-----CEEEEEGGG
T ss_pred             CCeE-EEE-ccCCCCCeEEEEEeCCC-----CEEEEECCC
Confidence            4432 221 12233456889999986     466666543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.07  E-value=3.3e-07  Score=73.14  Aligned_cols=190  Identities=10%  Similarity=0.087  Sum_probs=122.3

Q ss_pred             CEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEeec--cC----CCeEEEEECCCCCEEEEEcC--------------
Q psy11524         83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQA--HD----GLILKVAWCSSTDLILSGGE--------------  142 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~~--~~----~~v~~~~~~~~~~~l~~~~~--------------  142 (323)
                      ....++|.++|..++++.... .+...+..+....+..  ..    ...+.+++.++|++.++-..              
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~-~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRL-GLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTT-EEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             cceeEEEeCCCCEEEEEECCC-eEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceecc
Confidence            467899999999888776655 5666676665333211  11    13578999999988776432              


Q ss_pred             -CCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCC----EEEEEeC-C-eEEEEeCCCC-eee------ecC-CCCc
Q psy11524        143 -DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGD----MFAVGSY-N-TLRLCDKVGW-SHS------LDK-PDTG  207 (323)
Q Consensus       143 -d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~----~l~~~~~-~-~i~i~d~~~~-~~~------~~~-~~~~  207 (323)
                       .|.|.   .++.+++...... .....+.++|+|++.    .|+++.. . .|..||+... .+.      ... ....
T Consensus       151 ~~G~v~---~~~~dg~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~  226 (314)
T d1pjxa_         151 KFGSIY---CFTTDGQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG  226 (314)
T ss_dssp             SCEEEE---EECTTSCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC
T ss_pred             CCceEE---EEeecCceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccc
Confidence             22343   6666665443332 233457899999765    4555554 4 8988886522 211      111 1233


Q ss_pred             cEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCC-CCeEEEecc
Q psy11524        208 SVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKN-RDLYLSMWS  283 (323)
Q Consensus       208 ~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~-~~~~~~~~~  283 (323)
                      ....+++.++|+..++....+ |.+||.+.++.+..  +.......++++|.|++    +.|.+-+.. +.+...++.
T Consensus       227 ~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~--i~~p~~~~t~~afg~d~----~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         227 GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMR--IRCPFEKPSNLHFKPQT----KTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEE--EECSSSCEEEEEECTTS----SEEEEEETTTTEEEEEECS
T ss_pred             cceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEE--EECCCCCEEEEEEeCCC----CEEEEEECCCCcEEEEECC
Confidence            467899999999777777777 99999888876665  33444577899999987    677776543 445555543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.07  E-value=4.4e-08  Score=78.03  Aligned_cols=218  Identities=9%  Similarity=-0.031  Sum_probs=133.1

Q ss_pred             eeEeeEeccCCcceeeeeecc-c--cccccceeeecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCC---ceeEe-
Q psy11524         46 TVINYPISPYISVLHSYAASH-S--WPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN---KATKW-  118 (323)
Q Consensus        46 ~v~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~---~~~~~-  118 (323)
                      .+..++++|||..+..-...+ .  ++...+..........+.+++|+|+|+.+++....+ .+..++...   ....+ 
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~-~~~~~~~~~~~~~~~~~~  107 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNAD-SIPVVSLVKSDGTVETLL  107 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTT-SCEEEEEECTTSCEEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCc-eEEEEEecccccceeecc
Confidence            467899999996544332222 1  233333333344678899999999999777664443 454444322   22222 


Q ss_pred             -eccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeec-----------CCCceeEEEEecCCCEEEEEeC
Q psy11524        119 -QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLT-----------HDHPISSLAWAPGGDMFAVGSY  186 (323)
Q Consensus       119 -~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~-----------~~~~v~~~~~~p~~~~l~~~~~  186 (323)
                       .........+++.++++++++.+.++.+.   .++..+........           .......+.++  +..++.+..
T Consensus       108 ~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~  182 (302)
T d2p4oa1         108 TLPDAIFLNGITPLSDTQYLTADSYRGAIW---LIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNT  182 (302)
T ss_dssp             ECTTCSCEEEEEESSSSEEEEEETTTTEEE---EEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEET
T ss_pred             ccCCccccceeEEccCCCEEeeccccccce---eeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecC
Confidence             23445688999999999988888888888   88876544332211           11234556554  455555555


Q ss_pred             -C-eEEEEeCCCCeee---ecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEE---
Q psy11524        187 -N-TLRLCDKVGWSHS---LDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAV---  257 (323)
Q Consensus       187 -~-~i~i~d~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~---  257 (323)
                       + .|+.++.......   ...........++++++|++.++...++ |..++.. ++..........-...++++|   
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~  261 (302)
T d2p4oa1         183 EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQT  261 (302)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCS
T ss_pred             CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCC
Confidence             4 8888887643111   1111233456799999999777777778 9999865 443222112333446789999   


Q ss_pred             ccCCCCccceEEEEeCC
Q psy11524        258 NQTGSLQERHVAFIDKN  274 (323)
Q Consensus       258 ~p~g~~~d~~l~~~~~~  274 (323)
                      ++|+    +.|.+.+..
T Consensus       262 ~~D~----~~Lyvtt~~  274 (302)
T d2p4oa1         262 EGDC----TAIYVVTNG  274 (302)
T ss_dssp             TTTT----TEEEEEECT
T ss_pred             CCCC----CEEEEECCC
Confidence            5666    677776544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.04  E-value=1.4e-06  Score=69.65  Aligned_cols=214  Identities=7%  Similarity=-0.075  Sum_probs=133.0

Q ss_pred             cceeEeeEeccCCcceeeeeecc---ccccccc-eee-ecCCCCCEEEEEEcCCCCeEEEEeeC---CeEEEEeCCCCc-
Q psy11524         44 DGTVINYPISPYISVLHSYAASH---SWPQALS-LCR-TLNVSPPVYSAAWSPDSNKVLLTQAK---SLVIKPLSPNNK-  114 (323)
Q Consensus        44 ~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~-~~~~~~~v~~~~~sp~~~~l~~~~~~---~~~v~~~~~~~~-  114 (323)
                      ...+..+.|.++|.....-...+   .++...+ ... ..........++++++|+.+++...+   .+.+...+.... 
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence            34456788888885222111111   1232221 122 22355678899999999877654321   234555555544 


Q ss_pred             eeEeecc---CCCeEEEEECCCCCEEEEEcCC------CceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEe
Q psy11524        115 ATKWQAH---DGLILKVAWCSSTDLILSGGED------CKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGS  185 (323)
Q Consensus       115 ~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d------~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  185 (323)
                      ......+   ...+..+++.++|++.++....      +.+.   .++.+++.+..+...-...+.++|+|+++.|+++.
T Consensus       119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~---~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY---YVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEE---EECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeE---EEecccceeEEEeeccceeeeeeeccccceEEEec
Confidence            3333222   3357889999999876664321      2344   67777766665554445578899999999877776


Q ss_pred             C--CeEEEEeCCCC--eee-------ecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCC----Cc
Q psy11524        186 Y--NTLRLCDKVGW--SHS-------LDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLS----HS  249 (323)
Q Consensus       186 ~--~~i~i~d~~~~--~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~----~~  249 (323)
                      .  +.|+.||+...  ...       ...........+++.++|++.++...++ |.+|| ..|+.+.++.+..    +.
T Consensus       196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~~P~~~~~~~  274 (319)
T d2dg1a1         196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN-KRGYPIGQILIPGRDEGHM  274 (319)
T ss_dssp             GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC-TTSCEEEEEECTTGGGTCS
T ss_pred             ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC-CCCcEEEEEeCCCcCCCcC
Confidence            5  49999987532  111       1122233467899999999877777788 99999 5788877653432    33


Q ss_pred             cceEEEEEccCC
Q psy11524        250 HEITQLAVNQTG  261 (323)
Q Consensus       250 ~~v~~~~~~p~g  261 (323)
                      ..+++++|.|++
T Consensus       275 ~~~~~~~~~~~~  286 (319)
T d2dg1a1         275 LRSTHPQFIPGT  286 (319)
T ss_dssp             CBCCEEEECTTS
T ss_pred             ceeeeEEEeCCC
Confidence            457899998876

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=3.6e-08  Score=83.36  Aligned_cols=211  Identities=14%  Similarity=0.129  Sum_probs=123.3

Q ss_pred             EEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeE-eecc---CCCeEEEEECCCCCEEEEEcC---------CCceEeeeEE
Q psy11524         87 AAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATK-WQAH---DGLILKVAWCSSTDLILSGGE---------DCKYKASFVW  152 (323)
Q Consensus        87 ~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~-~~~~---~~~v~~~~~~~~~~~l~~~~~---------d~~i~~i~v~  152 (323)
                      ..|.+++.++..  ..++.+.+++.... ... +...   ...+....||||+++++....         .+.+.   ++
T Consensus        22 ~~W~~~~~~~~~--~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~---i~   96 (465)
T d1xfda1          22 AKWISDTEFIYR--EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV---LS   96 (465)
T ss_dssp             CCBSSSSCBCCC--CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE---EE
T ss_pred             CEEeCCCcEEEE--eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEE---EE
Confidence            458888876653  33357888887655 222 2221   235667889999998877643         34455   99


Q ss_pred             eCCCCeeeEeec---CCCceeEEEEecCCCEEEEEeCCeEEEEeCCCC-eeeecC-CCCcc-----------------EE
Q psy11524        153 DTDGRQLYSSLT---HDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGW-SHSLDK-PDTGS-----------------VY  210 (323)
Q Consensus       153 d~~~~~~~~~~~---~~~~v~~~~~~p~~~~l~~~~~~~i~i~d~~~~-~~~~~~-~~~~~-----------------v~  210 (323)
                      |+..+....+..   ....+....|||||+.+|....+.|++.+..+. ..+... +....                 -.
T Consensus        97 d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~  176 (465)
T d1xfda1          97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHI  176 (465)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred             EccCCceeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccc
Confidence            997665555533   334566789999999999998889999987643 333222 11111                 24


Q ss_pred             EEEEcCCCCEEEEEecCc--EEEEEcCCCceeeeecCCCCccceEEEEEccCCC-CccceEEEEeCCCCeEEEeccc-cc
Q psy11524        211 DLVWSNDATQIAGACANV--IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGS-LQERHVAFIDKNRDLYLSMWSH-SL  286 (323)
Q Consensus       211 ~~~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~-~~d~~l~~~~~~~~~~~~~~~~-~~  286 (323)
                      .+-|||||++||....|.  +..+.+....       ......+..+.+-..|. .....+.+.+.++....+.... ..
T Consensus       177 a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~-------~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~  249 (465)
T d1xfda1         177 AHWWSPDGTRLAYAAINDSRVPIMELPTYT-------GSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD  249 (465)
T ss_dssp             EEEECTTSSEEEEEEEECTTSCEEEECCCS-------SSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCC
T ss_pred             eEEECCCCCeEEEEEecccccceeeccccc-------ccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCc
Confidence            677999999999877554  7766653211       00111222233322221 1123566677665433222211 01


Q ss_pred             CCCCccceeEEEEeeCCCeeEee
Q psy11524        287 DKPDTGSVYDLVWSSDATQIAGA  309 (323)
Q Consensus       287 ~~~~~~~v~~~~~s~~g~~l~s~  309 (323)
                      .......+..+.|+|++++++..
T Consensus       250 ~~~~~~y~~~~~W~~d~~~~~~~  272 (465)
T d1xfda1         250 PRMREYYITMVKWATSTKVAVTW  272 (465)
T ss_dssp             GGGSSEEEEEEEESSSSEEEEEE
T ss_pred             CccccceeeeeEEcCCCeEEEEE
Confidence            11123457889999999866643

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.9e-07  Score=78.76  Aligned_cols=254  Identities=15%  Similarity=0.181  Sum_probs=136.9

Q ss_pred             eeEeeEeccCCcceeeeee-cccc-----------ccccceeeecC----CCCCEEEEEEcCCCCeEEEEeeCCeEEEEe
Q psy11524         46 TVINYPISPYISVLHSYAA-SHSW-----------PQALSLCRTLN----VSPPVYSAAWSPDSNKVLLTQAKSLVIKPL  109 (323)
Q Consensus        46 ~v~~~~~~~~~~~~~~~~~-~~~~-----------~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~  109 (323)
                      .+....+|||++.+..... ...|           |...+....+.    ....+....|||||+.+|+....  .|++.
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~--nl~~~  139 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN--NIYYC  139 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETT--EEEEE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEecc--eEEEE
Confidence            5567789999976543221 2223           21111112221    24456678999999999998644  57777


Q ss_pred             CCCCc-eeEee--ccCC-----------------CeEEEEECCCCCEEEEEcCC-CceE---------------------
Q psy11524        110 SPNNK-ATKWQ--AHDG-----------------LILKVAWCSSTDLILSGGED-CKYK---------------------  147 (323)
Q Consensus       110 ~~~~~-~~~~~--~~~~-----------------~v~~~~~~~~~~~l~~~~~d-~~i~---------------------  147 (323)
                      +..+. ...+.  +..+                 .-.++-|||||++||....| ..+.                     
T Consensus       140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp  219 (465)
T d1xfda1         140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP  219 (465)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred             ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecc
Confidence            66544 22221  1111                 12477899999999986532 2221                     


Q ss_pred             ---------eeeEEeCCCCeeeEe-------ecCCCceeEEEEecCCCEEEEEeC---C--eEEEEeCCCCeee-ecC-C
Q psy11524        148 ---------ASFVWDTDGRQLYSS-------LTHDHPISSLAWAPGGDMFAVGSY---N--TLRLCDKVGWSHS-LDK-P  204 (323)
Q Consensus       148 ---------~i~v~d~~~~~~~~~-------~~~~~~v~~~~~~p~~~~l~~~~~---~--~i~i~d~~~~~~~-~~~-~  204 (323)
                               .++++|++++.....       ......+..+.|+|+++.++....   +  .+.++|..+.... ... .
T Consensus       220 ~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~  299 (465)
T d1xfda1         220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE  299 (465)
T ss_dssp             BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred             ccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc
Confidence                     244666643322111       112224678899999887655443   2  5788887754333 221 1


Q ss_pred             CCccE----EEEEEcCCCCEEEE--Ee-cCc---EEEEEcC------CCceeeeecCCCCccceEEE-EEccCCCCccce
Q psy11524        205 DTGSV----YDLVWSNDATQIAG--AC-ANV---IHIFDIS------SSSSSNVTAPLSHSHEITQL-AVNQTGSLQERH  267 (323)
Q Consensus       205 ~~~~v----~~~~~~~~~~~l~~--~~-~d~---i~iwd~~------~~~~~~~~~~~~~~~~v~~~-~~~p~g~~~d~~  267 (323)
                      ..++|    ....|+|+|+.++.  .+ .++   ++..++.      .++.+..  +....-.|..+ +|++++    +.
T Consensus       300 ~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~--LT~G~w~V~~i~~~d~~~----~~  373 (465)
T d1xfda1         300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQS--ITSGDWDVTKILAYDEKG----NK  373 (465)
T ss_dssp             CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCB--SCCSSSCEEEEEEEETTT----TE
T ss_pred             CCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEE--eccCCceEEEEEEEcCCC----CE
Confidence            22222    35689999985432  22 233   5544432      2233333  34445556665 688887    55


Q ss_pred             EEEE-eCC--CCeEEEeccc--c-----cC--CCCccceeEEEEeeCCCeeE
Q psy11524        268 VAFI-DKN--RDLYLSMWSH--S-----LD--KPDTGSVYDLVWSSDATQIA  307 (323)
Q Consensus       268 l~~~-~~~--~~~~~~~~~~--~-----~~--~~~~~~v~~~~~s~~g~~l~  307 (323)
                      |.+- ..+  +...+|.+..  .     +.  ..+.....++.|||+|++++
T Consensus       374 vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v  425 (465)
T d1xfda1         374 IYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFL  425 (465)
T ss_dssp             EEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEE
T ss_pred             EEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEE
Confidence            5443 222  2334544432  1     00  11234567999999999888

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.92  E-value=2e-06  Score=67.78  Aligned_cols=214  Identities=9%  Similarity=-0.038  Sum_probs=131.9

Q ss_pred             EEEEEcCCCCeEEEEeeCCeEEEEeCCCCceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeec
Q psy11524         85 YSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLT  164 (323)
Q Consensus        85 ~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~  164 (323)
                      .+..|++....|....-..+.|+.|+..+...........+.++++.++|.+++++ .+ .+.   .+|..+.....+..
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va~-~~-gl~---~~d~~tg~~~~l~~   95 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DD-GLF---LRDTATGVLTLHAE   95 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TT-EEE---EEETTTCCEEEEEC
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEEE-eC-ccE---EeecccceeeEEee
Confidence            46779887777777765567899999887755544556788899999998777654 44 466   89987655555432


Q ss_pred             C-----CCceeEEEEecCCCEEEEEeC-----CeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEec-Cc-EEEE
Q psy11524        165 H-----DHPISSLAWAPGGDMFAVGSY-----NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACA-NV-IHIF  232 (323)
Q Consensus       165 ~-----~~~v~~~~~~p~~~~l~~~~~-----~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~-i~iw  232 (323)
                      .     ...++.+.+.|+|++.++...     +.-.+|.+...........-.....++|+++++.++.... .+ |+.|
T Consensus        96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~  175 (295)
T d2ghsa1          96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRV  175 (295)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred             eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEe
Confidence            1     235788999999987666542     1345666544433333223345678999999987766554 45 9888


Q ss_pred             EcCCCc------eeeeecCCCCccceEEEEEccCCCCccceEEEEe-CCCCeEEEecccc---cCCCCccceeEEEEe-e
Q psy11524        233 DISSSS------SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFID-KNRDLYLSMWSHS---LDKPDTGSVYDLVWS-S  301 (323)
Q Consensus       233 d~~~~~------~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~-~~~~~~~~~~~~~---~~~~~~~~v~~~~~s-~  301 (323)
                      ++....      ........+..+....+++..+|+     |.+.. ..+.+..++....   ....+...+++++|- |
T Consensus       176 ~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-----lWva~~~~g~V~~~dp~G~~~~~i~lP~~~~T~~~FGG~  250 (295)
T d2ghsa1         176 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-----IWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGP  250 (295)
T ss_dssp             EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-----EEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEEST
T ss_pred             eecccccccccceEEEeccCcccccccceEEcCCCC-----EEeeeeCCCceEEecCCCcEeeEecCCCCceEEEEEeCC
Confidence            864321      111111334455677888888873     22222 2233444443221   112224568999996 6


Q ss_pred             CCCeeEe
Q psy11524        302 DATQIAG  308 (323)
Q Consensus       302 ~g~~l~s  308 (323)
                      |.+.|+.
T Consensus       251 d~~~Lyv  257 (295)
T d2ghsa1         251 DASRLLV  257 (295)
T ss_dssp             TSCEEEE
T ss_pred             CCCEEEE
Confidence            7666653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.80  E-value=2.2e-07  Score=72.66  Aligned_cols=188  Identities=13%  Similarity=0.085  Sum_probs=102.9

Q ss_pred             EeccC--Ccceeeeeecccc--ccccceeeec-CCCCCEEEEEEcCCCCeEEEEeeCC-----eEEEEeCCCCc-eeEee
Q psy11524         51 PISPY--ISVLHSYAASHSW--PQALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKS-----LVIKPLSPNNK-ATKWQ  119 (323)
Q Consensus        51 ~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~-----~~v~~~~~~~~-~~~~~  119 (323)
                      ..+|+  |+.++.......|  +......+.+ .+...+...+|||||++||+.....     ..|++++..+. ...+.
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt   84 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT   84 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEee
Confidence            45666  6655422222234  3222222333 4667789999999999999875422     35777776655 33333


Q ss_pred             cc-------CCCeEEEEECCCCCEEEEEcCCC---ceEeeeEEeCCCCee------------------------------
Q psy11524        120 AH-------DGLILKVAWCSSTDLILSGGEDC---KYKASFVWDTDGRQL------------------------------  159 (323)
Q Consensus       120 ~~-------~~~v~~~~~~~~~~~l~~~~~d~---~i~~i~v~d~~~~~~------------------------------  159 (323)
                      .+       ......+.|+|||+.|+......   ....+...+.++...                              
T Consensus        85 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (281)
T d1k32a2          85 YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHW  164 (281)
T ss_dssp             CCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTS
T ss_pred             ecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeecccccee
Confidence            22       23456789999999887653321   010001222211110                              


Q ss_pred             --------------------eEeecCCCceeEEEEecCCCEEEEEeC--C--eEEEEeCCCCeeeecCCCCccEEEEEEc
Q psy11524        160 --------------------YSSLTHDHPISSLAWAPGGDMFAVGSY--N--TLRLCDKVGWSHSLDKPDTGSVYDLVWS  215 (323)
Q Consensus       160 --------------------~~~~~~~~~v~~~~~~p~~~~l~~~~~--~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~  215 (323)
                                          ..............++++  .++....  +  .|+++|+.+.....+..+.. .....|+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~-~~~~~~S  241 (281)
T d1k32a2         165 KGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD-YYPRHLN  241 (281)
T ss_dssp             TTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCS-SCEEEEE
T ss_pred             eeeccCCcceeeeeccccceeeccCCccccceeeeecc--ccceecccccccceEEEeCCCCceEEeecCCC-cccccCc
Confidence                                000111222333444443  3333333  3  78899988765555443322 2334689


Q ss_pred             CCCCEEEEEecCc-EEEEEcCCCceeee
Q psy11524        216 NDATQIAGACANV-IHIFDISSSSSSNV  242 (323)
Q Consensus       216 ~~~~~l~~~~~d~-i~iwd~~~~~~~~~  242 (323)
                      |||+.|+.. .++ |+++|+.+++....
T Consensus       242 pDG~~I~f~-~~~~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         242 TDGRRILFS-KGGSIYIFNPDTEKIEKI  268 (281)
T ss_dssp             ESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred             CCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence            999998764 467 99999998876653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.52  E-value=9.7e-05  Score=57.87  Aligned_cols=185  Identities=9%  Similarity=-0.041  Sum_probs=121.0

Q ss_pred             eecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEeecc-----CCCeEEEEECCCCCEEEEEcCC----Cc
Q psy11524         76 RTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQAH-----DGLILKVAWCSSTDLILSGGED----CK  145 (323)
Q Consensus        76 ~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d----~~  145 (323)
                      ..+.....+.++++.++|..+++ +.+  .+..+|..+. ...+...     ...++.+.+.|+|++.++....    +.
T Consensus        53 ~~~~~~~~~~~i~~~~dg~l~va-~~~--gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~  129 (295)
T d2ghsa1          53 TVHALPFMGSALAKISDSKQLIA-SDD--GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGA  129 (295)
T ss_dssp             EEEECSSCEEEEEEEETTEEEEE-ETT--EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTC
T ss_pred             EEEECCCCcEEEEEecCCCEEEE-EeC--ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccc
Confidence            44455678899999999877764 343  4666776654 3333221     2357899999999876665322    23


Q ss_pred             eEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC--CeEEEEeCCCC-------ee--eecCCCCccEEEEEE
Q psy11524        146 YKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY--NTLRLCDKVGW-------SH--SLDKPDTGSVYDLVW  214 (323)
Q Consensus       146 i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--~~i~i~d~~~~-------~~--~~~~~~~~~v~~~~~  214 (323)
                      -.   +|.+....+..+...-...+.++|+++++.++.+..  +.|+.+++...       ..  ....+..+....+++
T Consensus       130 g~---l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~v  206 (295)
T d2ghsa1         130 GS---IYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVC  206 (295)
T ss_dssp             EE---EEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEE
T ss_pred             ee---EeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEE
Confidence            34   566644444444444445688999999998777766  38888886421       11  122234556889999


Q ss_pred             cCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEc-cCCCCccceEEEEeC
Q psy11524        215 SNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVN-QTGSLQERHVAFIDK  273 (323)
Q Consensus       215 ~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-p~g~~~d~~l~~~~~  273 (323)
                      ..+|++.++.-..+ |..|| .+|+.+..+.+  ....+++++|- |+.    +.|.+-+.
T Consensus       207 D~~GnlWva~~~~g~V~~~d-p~G~~~~~i~l--P~~~~T~~~FGG~d~----~~LyvTta  260 (295)
T d2ghsa1         207 DAEGHIWNARWGEGAVDRYD-TDGNHIARYEV--PGKQTTCPAFIGPDA----SRLLVTSA  260 (295)
T ss_dssp             CTTSCEEEEEETTTEEEEEC-TTCCEEEEEEC--SCSBEEEEEEESTTS----CEEEEEEB
T ss_pred             cCCCCEEeeeeCCCceEEec-CCCcEeeEecC--CCCceEEEEEeCCCC----CEEEEEEC
Confidence            99998777666677 99999 56888877433  33468999995 565    56666543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=0.0023  Score=48.83  Aligned_cols=176  Identities=5%  Similarity=-0.130  Sum_probs=111.9

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc-eeEee-ccCCCeEEEEECCCCCEEEEEcCC-CceEeeeEEeCCCC
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK-ATKWQ-AHDGLILKVAWCSSTDLILSGGED-CKYKASFVWDTDGR  157 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~i~v~d~~~~  157 (323)
                      ...+.++++..-+..|..+....+.|...++.+. ...+. .....+..+++.|...+++..... +..+ |+.-++++.
T Consensus        78 ~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~-I~r~~~dG~  156 (263)
T d1npea_          78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPK-IETSHMDGT  156 (263)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCE-EEEEETTSC
T ss_pred             cccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcE-EEEecCCCC
Confidence            3578999999888888887766678888887766 23332 334678899999977666654332 2323 115567665


Q ss_pred             eeeEee-cCCCceeEEEEecCCCEEEEEeC--CeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEe-cCc-EEEE
Q psy11524        158 QLYSSL-THDHPISSLAWAPGGDMFAVGSY--NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGAC-ANV-IHIF  232 (323)
Q Consensus       158 ~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~--~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~-i~iw  232 (323)
                      ....+. ..-.....+++++.++.|..+..  +.|...|+.+..............++++.  +.+|.... ..+ |...
T Consensus       157 ~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~  234 (263)
T d1npea_         157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAM  234 (263)
T ss_dssp             CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred             CceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEE
Confidence            544443 23345689999998888877765  38999999875443222222335677776  44565555 445 9999


Q ss_pred             EcCCCceeeeecCCCCccceEEEEEccC
Q psy11524        233 DISSSSSSNVTAPLSHSHEITQLAVNQT  260 (323)
Q Consensus       233 d~~~~~~~~~~~~~~~~~~v~~~~~~p~  260 (323)
                      |..+++.+..+ ..........++..++
T Consensus       235 ~~~~g~~~~~~-~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         235 DLAISKEMDTF-HPHKQTRLYGITIALS  261 (263)
T ss_dssp             ETTTTEEEEEE-CCSSCCCCCCEEEECS
T ss_pred             ECCCCccceEE-CCCCCCCcceEEEeCC
Confidence            98888877653 2233334455655443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.88  E-value=0.0022  Score=51.60  Aligned_cols=194  Identities=9%  Similarity=0.012  Sum_probs=107.3

Q ss_pred             EEEEcC---CCCeEEEEeeCCeEEEEeCCCCc-eeEe--eccCCCeEEEEECCC--CCEEEEEcCCC-------c-----
Q psy11524         86 SAAWSP---DSNKVLLTQAKSLVIKPLSPNNK-ATKW--QAHDGLILKVAWCSS--TDLILSGGEDC-------K-----  145 (323)
Q Consensus        86 ~~~~sp---~~~~l~~~~~~~~~v~~~~~~~~-~~~~--~~~~~~v~~~~~~~~--~~~l~~~~~d~-------~-----  145 (323)
                      .+++..   ||+++++....+..|-..|+... ...+  ......+..+...++  ..+++..+.+.       .     
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            555544   89999988777778888887664 2111  123445666776554  45777666522       1     


Q ss_pred             ---eEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeCC----------------eEEEEeC------------
Q psy11524        146 ---YKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN----------------TLRLCDK------------  194 (323)
Q Consensus       146 ---i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~----------------~i~i~d~------------  194 (323)
                         ...+.+.|.+...+..-..-.+....++++|+|+++++.+.+                .+.+++.            
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~  248 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  248 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence               011226777644433222234456789999999998887631                3444443            


Q ss_pred             -----------CC---CeeeecCCCCccEEEEEEcCCCCEEEEEecC-c-EEEEEcCCCcee--------eeec-CCCCc
Q psy11524        195 -----------VG---WSHSLDKPDTGSVYDLVWSNDATQIAGACAN-V-IHIFDISSSSSS--------NVTA-PLSHS  249 (323)
Q Consensus       195 -----------~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~-i~iwd~~~~~~~--------~~~~-~~~~~  249 (323)
                                 +.   .......+-......+.++|||+++++++.- . +.++|++.-..+        .... -....
T Consensus       249 ~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elg  328 (459)
T d1fwxa2         249 QELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG  328 (459)
T ss_dssp             EEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCC
T ss_pred             EEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccC
Confidence                       10   0000011112335578999999999888764 4 999998632111        1000 01122


Q ss_pred             cceEEEEEccCCCCccceEEEEeCCCCeEEEecc
Q psy11524        250 HEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWS  283 (323)
Q Consensus       250 ~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~  283 (323)
                      -....-+|...|    ....+.-.+..+.-|++.
T Consensus       329 lgPLht~fd~~g----~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         329 LGPLHTAFDGRG----NAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             SCEEEEEECTTS----EEEEEETTTTEEEEEEHH
T ss_pred             cCccccccCCCc----eEEEEeeccceEEEEecc
Confidence            233456777766    333333456666666664

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.61  E-value=0.0074  Score=45.85  Aligned_cols=213  Identities=8%  Similarity=-0.004  Sum_probs=121.9

Q ss_pred             CCeEEEEeeCCeEEEEeCCCCc-------eeEeeccCCCeEEEEECCCCCEEEEEc-CCCceEeeeEEeCCCCeeeEeec
Q psy11524         93 SNKVLLTQAKSLVIKPLSPNNK-------ATKWQAHDGLILKVAWCSSTDLILSGG-EDCKYKASFVWDTDGRQLYSSLT  164 (323)
Q Consensus        93 ~~~l~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~i~v~d~~~~~~~~~~~  164 (323)
                      |.+|+++...  .|+-..+++.       ...+..+...+.+++|.+..+.|+... .++.|+   ..++++.....+..
T Consensus         1 ~~fLl~s~~~--~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~---~~~l~g~~~~~v~~   75 (263)
T d1npea_           1 GTHLLFAQTG--KIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIG---RASLHGGEPTTIIR   75 (263)
T ss_dssp             CEEEEEEEEE--EEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEE---EEESSSCCCEEEEC
T ss_pred             CCEEEEeCCC--eEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEE---EEEcccCCcEEEEE
Confidence            4567766544  4444433322       122334445677899998777766654 567788   88887665555443


Q ss_pred             -CCCceeEEEEecCCCEEEEEeC-C-eEEEEeCCCCeee-ecCCCCccEEEEEEcCCCCEEEEEecC-c-EEEE--EcCC
Q psy11524        165 -HDHPISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSHS-LDKPDTGSVYDLVWSNDATQIAGACAN-V-IHIF--DISS  236 (323)
Q Consensus       165 -~~~~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d-~-i~iw--d~~~  236 (323)
                       ....+.++++..-+..|+.+.. . .|.+.++.+.... ........+..++++|...+|+....+ + .+|+  ++..
T Consensus        76 ~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG  155 (263)
T d1npea_          76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG  155 (263)
T ss_dssp             TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred             eccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCC
Confidence             3356889999887777776665 3 9999999866433 333334578999999977777655433 2 4455  4443


Q ss_pred             CceeeeecCCCCccceEEEEEccCCCCccceEEEEeCC-CCeEEEecccc----cCCCCccceeEEEEeeCCCeeE-eee
Q psy11524        237 SSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKN-RDLYLSMWSHS----LDKPDTGSVYDLVWSSDATQIA-GAC  310 (323)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~-~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~-s~~  310 (323)
                      ......  ....-.....+++.+.+    +.|...+.. +.+...++...    +... .....++++.  +..|. +-.
T Consensus       156 ~~~~~i--~~~~~~~P~glaiD~~~----~~lYw~d~~~~~I~~~~~~g~~~~~v~~~-~~~P~~lav~--~~~lYwtd~  226 (263)
T d1npea_         156 TNRRIL--AQDNLGLPNGLTFDAFS----SQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDW  226 (263)
T ss_dssp             CCCEEE--ECTTCSCEEEEEEETTT----TEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEET
T ss_pred             CCceee--eeecccccceEEEeecC----cEEEEEeCCCCEEEEEECCCCCeEEEECC-CCCcEEEEEE--CCEEEEEEC
Confidence            332222  23333456789998876    555555532 33444444332    1111 1223567664  44454 434


Q ss_pred             cCCeEEEEE
Q psy11524        311 ANGSLLLGT  319 (323)
Q Consensus       311 ~dg~i~~~~  319 (323)
                      ..+.|...+
T Consensus       227 ~~~~I~~~~  235 (263)
T d1npea_         227 KTNSVIAMD  235 (263)
T ss_dssp             TTTEEEEEE
T ss_pred             CCCEEEEEE
Confidence            556555444

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.017  Score=43.81  Aligned_cols=157  Identities=10%  Similarity=-0.012  Sum_probs=105.4

Q ss_pred             CCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCce--eEeeccCCCeEEEEECCCCCEEEEEc--CCCceEeeeEEeCCC
Q psy11524         81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKA--TKWQAHDGLILKVAWCSSTDLILSGG--EDCKYKASFVWDTDG  156 (323)
Q Consensus        81 ~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~i~v~d~~~  156 (323)
                      ...+.++++.+.+..|..+....+.|.+.++.+..  ..+.........++..|...+|....  ..+.|.   ..++++
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~---r~~~dG  152 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIK---KGGLNG  152 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEE---EEETTS
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCccee---EeccCC
Confidence            35677899998888888887666789998887762  23444456788999998665555443  334566   777877


Q ss_pred             CeeeEeec-CCCceeEEEEecCCCEEEEEeC--CeEEEEeCCCCeee-ec--CCCCccEEEEEEcCCCCEEEEEe-cCc-
Q psy11524        157 RQLYSSLT-HDHPISSLAWAPGGDMFAVGSY--NTLRLCDKVGWSHS-LD--KPDTGSVYDLVWSNDATQIAGAC-ANV-  228 (323)
Q Consensus       157 ~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~--~~i~i~d~~~~~~~-~~--~~~~~~v~~~~~~~~~~~l~~~~-~d~-  228 (323)
                      .....+.. .-.....+++++.++.|..+..  +.|...|+.+.... ..  .........+++.  +.+|.... .++ 
T Consensus       153 s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~  230 (266)
T d1ijqa1         153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEA  230 (266)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred             CceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCe
Confidence            66665543 3356789999998888877766  38999998865322 22  2222346677776  33555554 455 


Q ss_pred             EEEEEcCCCceeee
Q psy11524        229 IHIFDISSSSSSNV  242 (323)
Q Consensus       229 i~iwd~~~~~~~~~  242 (323)
                      |...+..+++....
T Consensus       231 I~~~~~~~g~~~~~  244 (266)
T d1ijqa1         231 IFSANRLTGSDVNL  244 (266)
T ss_dssp             EEEEETTTCCCCEE
T ss_pred             EEEEECCCCcceEE
Confidence            88888777765554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.16  E-value=0.016  Score=46.62  Aligned_cols=177  Identities=7%  Similarity=0.032  Sum_probs=109.0

Q ss_pred             CCCEEEEEc-CCCceEeeeEEeCCCCeeeEee--cCCCceeEEEEec--CCCEEEEEeCCe-------------------
Q psy11524        133 STDLILSGG-EDCKYKASFVWDTDGRQLYSSL--THDHPISSLAWAP--GGDMFAVGSYNT-------------------  188 (323)
Q Consensus       133 ~~~~l~~~~-~d~~i~~i~v~d~~~~~~~~~~--~~~~~v~~~~~~p--~~~~l~~~~~~~-------------------  188 (323)
                      ||++|.... .+++|.   +.|++..++..+.  .....+..++..+  +-.+++..+...                   
T Consensus        98 DGrylFVNDkan~RVA---vIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~  174 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVA---RVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  174 (459)
T ss_dssp             EEEEEEEEETTTTEEE---EEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred             ceeEEEEEcCCCceEE---EEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence            788877765 478888   9999755554432  2344566666655  444566655422                   


Q ss_pred             EEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecC--------------c--EEEEE-------------------
Q psy11524        189 LRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN--------------V--IHIFD-------------------  233 (323)
Q Consensus       189 i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------~--i~iwd-------------------  233 (323)
                      +.++|..+..+.....-.+....+.++|+|+++++.+.+              .  +.+++                   
T Consensus       175 ~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV  254 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  254 (459)
T ss_dssp             EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence            456787765544322234457789999999999987743              1  33443                   


Q ss_pred             ----cCCC---ceeeeecCCCCccceEEEEEccCCCCccceEEEE-eCCCCeEEEecccc----------------cCCC
Q psy11524        234 ----ISSS---SSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFI-DKNRDLYLSMWSHS----------------LDKP  289 (323)
Q Consensus       234 ----~~~~---~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~-~~~~~~~~~~~~~~----------------~~~~  289 (323)
                          .+..   ..+..   ..-......+.++|||    +++.+. ..+..+.+++++..                ....
T Consensus       255 ~VVD~~~~~~~~v~~y---IPVpKsPHGV~vSPDG----Kyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el  327 (459)
T d1fwxa2         255 KVVDGRKEASSLFTRY---IPIANNPHGCNMAPDK----KHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL  327 (459)
T ss_dssp             EEEECSGG--CSSEEE---EEEESSCCCEEECTTS----SEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC
T ss_pred             eeecccccCCcceeEE---EecCCCCCceEECCCC----CEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc
Confidence                2211   11111   1112335578899999    666665 46677888888643                1111


Q ss_pred             CccceeEEEEeeCCCeeEeeecCCeEEEEEe
Q psy11524        290 DTGSVYDLVWSSDATQIAGACANGSLLLGTI  320 (323)
Q Consensus       290 ~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~l  320 (323)
                       +..-...+|...|....|.--|..|.-|++
T Consensus       328 -glgPLht~fd~~g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         328 -GLGPLHTAFDGRGNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             -CSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             -CcCccccccCCCceEEEEeeccceEEEEec
Confidence             344567789888876667778999999987

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.034  Score=42.12  Aligned_cols=212  Identities=7%  Similarity=-0.033  Sum_probs=120.0

Q ss_pred             eEEEEeeCCeEEEEeCCCCc-eeEeeccCCCeEEEEECCCCCEEEEEc-CCCceEeeeEEeCCCC----eee-EeecCCC
Q psy11524         95 KVLLTQAKSLVIKPLSPNNK-ATKWQAHDGLILKVAWCSSTDLILSGG-EDCKYKASFVWDTDGR----QLY-SSLTHDH  167 (323)
Q Consensus        95 ~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~i~v~d~~~~----~~~-~~~~~~~  167 (323)
                      +|+++...  .|+-.++.+. ...+......+.+++|.+..+.|+-.. ..+.|.   ..++++.    ... .+.....
T Consensus         3 fLl~s~~~--~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~---~~~l~~~~~~~~~~~~~~~~~~   77 (266)
T d1ijqa1           3 YLFFTNRH--EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMIC---STQLDRAHGVSSYDTVISRDIQ   77 (266)
T ss_dssp             EEEEECBS--SEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEE---EEEC--------CEEEECSSCS
T ss_pred             EEEEECCC--eEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEE---EEEecCCCCCcceEEEEeCCCC
Confidence            46666544  3555666554 344444556778999998887777664 455666   6666421    122 2233345


Q ss_pred             ceeEEEEecCCCEEEEEeC-C-eEEEEeCCCCee-eecCCCCccEEEEEEcCCCCEEEEEec--Cc-EEEEEcCCCceee
Q psy11524        168 PISSLAWAPGGDMFAVGSY-N-TLRLCDKVGWSH-SLDKPDTGSVYDLVWSNDATQIAGACA--NV-IHIFDISSSSSSN  241 (323)
Q Consensus       168 ~v~~~~~~p~~~~l~~~~~-~-~i~i~d~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~-i~iwd~~~~~~~~  241 (323)
                      .+..+++.+.+..|..+.. . .|.+.++.+... ............++++|...+|.....  .+ |.-.++.......
T Consensus        78 ~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~  157 (266)
T d1ijqa1          78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  157 (266)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             CcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceec
Confidence            6778999987777777766 3 999999987643 334444567899999996656655443  33 6666665443333


Q ss_pred             eecCCCCccceEEEEEccCCCCccceEEEEeCC-CCeEEEecccc----cC--CCCccceeEEEEeeCCCeeE-eeecCC
Q psy11524        242 VTAPLSHSHEITQLAVNQTGSLQERHVAFIDKN-RDLYLSMWSHS----LD--KPDTGSVYDLVWSSDATQIA-GACANG  313 (323)
Q Consensus       242 ~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~-~~~~~~~~~~~----~~--~~~~~~v~~~~~s~~g~~l~-s~~~dg  313 (323)
                      .  ....-.....+++.+.+    +.|...+.. +.+...++...    +.  ........++++.  +..|. +-..++
T Consensus       158 l--~~~~~~~p~gl~iD~~~----~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~  229 (266)
T d1ijqa1         158 L--VTENIQWPNGITLDLLS----GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINE  229 (266)
T ss_dssp             E--ECSSCSCEEEEEEETTT----TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTT
T ss_pred             c--cccccceeeEEEeeccc----cEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCC
Confidence            2  23333556889999877    455554433 23333333221    10  1111234566665  33444 444556


Q ss_pred             eEEEEE
Q psy11524        314 SLLLGT  319 (323)
Q Consensus       314 ~i~~~~  319 (323)
                      .|+..+
T Consensus       230 ~I~~~~  235 (266)
T d1ijqa1         230 AIFSAN  235 (266)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            665443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.76  E-value=0.083  Score=41.44  Aligned_cols=132  Identities=9%  Similarity=0.024  Sum_probs=72.3

Q ss_pred             EEEEE--CCCCC-EEEEEc---CCCceEeeeEEeC--CCCeeeEee----cCCCceeEEEEecCCCEEEEEe--------
Q psy11524        126 LKVAW--CSSTD-LILSGG---EDCKYKASFVWDT--DGRQLYSSL----THDHPISSLAWAPGGDMFAVGS--------  185 (323)
Q Consensus       126 ~~~~~--~~~~~-~l~~~~---~d~~i~~i~v~d~--~~~~~~~~~----~~~~~v~~~~~~p~~~~l~~~~--------  185 (323)
                      ..+..  .++|+ +|++..   ...+|.   ++++  .+..+....    ......+++++..++.++++-.        
T Consensus       100 hGi~l~~~~dg~~~L~vvnH~~~~~~ie---if~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~  176 (340)
T d1v04a_         100 HGISTFIDDDNTVYLLVVNHPGSSSTVE---VFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL  176 (340)
T ss_dssp             EEEEEEECTTCCEEEEEEECSTTCCEEE---EEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHH
T ss_pred             cceeEEEcCCCcEEEEEEeccCCCceeE---EEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhh
Confidence            44443  44565 444443   345676   7776  333333221    1234578999998888777732        


Q ss_pred             --------CCeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc--EEEEEcCCCceeeeecCCCCccceEEE
Q psy11524        186 --------YNTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV--IHIFDISSSSSSNVTAPLSHSHEITQL  255 (323)
Q Consensus       186 --------~~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~v~~~  255 (323)
                              .....+|.............-.....++++||+++|+++...+  |+.|++.....+............-.+
T Consensus       177 ~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi  256 (340)
T d1v04a_         177 KSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNI  256 (340)
T ss_dssp             HHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEE
T ss_pred             hhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCcc
Confidence                    1122334333333333222345688999999999888776655  999998754433221111233344556


Q ss_pred             EEccC
Q psy11524        256 AVNQT  260 (323)
Q Consensus       256 ~~~p~  260 (323)
                      .+.+.
T Consensus       257 ~~d~~  261 (340)
T d1v04a_         257 SVDPV  261 (340)
T ss_dssp             EECTT
T ss_pred             EEecC
Confidence            66543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.06  E-value=0.24  Score=39.10  Aligned_cols=154  Identities=12%  Similarity=0.143  Sum_probs=90.3

Q ss_pred             CEEEEEEcCCCCeEEEEeeCC----------eEEEEeCCCCce----eEe-eccCCCeEEEEECCCCCEEEEEcCC-Cce
Q psy11524         83 PVYSAAWSPDSNKVLLTQAKS----------LVIKPLSPNNKA----TKW-QAHDGLILKVAWCSSTDLILSGGED-CKY  146 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~~~----------~~v~~~~~~~~~----~~~-~~~~~~v~~~~~~~~~~~l~~~~~d-~~i  146 (323)
                      ++.......+|+.+++|+...          ..+.+||.....    ... ..+.......++.++|++++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            444455566888888877321          146789887651    111 2233334566789999999988765 567


Q ss_pred             EeeeEEeCCCCeeeEeecC--CCceeEEEEecCCCEEEEEeC-------CeEEEEeCCCCeeeecCC----------CCc
Q psy11524        147 KASFVWDTDGRQLYSSLTH--DHPISSLAWAPGGDMFAVGSY-------NTLRLCDKVGWSHSLDKP----------DTG  207 (323)
Q Consensus       147 ~~i~v~d~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~~~~~-------~~i~i~d~~~~~~~~~~~----------~~~  207 (323)
                      .   +||.....-......  ...-...+..+||++++.++.       +.+.+||..+..-.....          +..
T Consensus       101 ~---~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~  177 (387)
T d1k3ia3         101 S---LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG  177 (387)
T ss_dssp             E---EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG
T ss_pred             e---EecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccc
Confidence            7   999865444333221  122345677789999888874       158899987653322111          000


Q ss_pred             -----cEEEEEEcCCCCEEEEEecCc-EEEEEcCCCce
Q psy11524        208 -----SVYDLVWSNDATQIAGACANV-IHIFDISSSSS  239 (323)
Q Consensus       208 -----~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~  239 (323)
                           .-..+..-++|+.+..+.... +.++|..+...
T Consensus       178 ~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         178 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             eeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence                 011122334666666666666 77777766543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.94  E-value=0.22  Score=37.75  Aligned_cols=194  Identities=11%  Similarity=0.115  Sum_probs=119.3

Q ss_pred             eecCCCCCEEEEEEcCCCCeEEEEeeCCeEEEEeCCCCc---eeEeeccC----CCeEEEEECCCCCEEEEEc---CCCc
Q psy11524         76 RTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK---ATKWQAHD----GLILKVAWCSSTDLILSGG---EDCK  145 (323)
Q Consensus        76 ~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~~~---~~~~~~~~----~~v~~~~~~~~~~~l~~~~---~d~~  145 (323)
                      +.....++|.--.|-.+. .|+.....  .|+-|+.++.   .+.+..|.    ..|..-..++++++++..+   .++.
T Consensus        97 ks~~~~e~VvfWkWis~~-~L~lVT~t--aVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~  173 (327)
T d1utca2          97 KAHTMTDDVTFWKWISLN-TVALVTDN--AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR  173 (327)
T ss_dssp             EEEECSSCCCEEEESSSS-EEEEECSS--EEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTE
T ss_pred             ceEEcCCCcEEEEecCCC-EEEEEcCC--ceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCc
Confidence            333456677777776544 45544443  7888988553   44454443    4677778888998876543   2322


Q ss_pred             eE-eeeEEeCCCCeeeEeecCCCceeEEEEecC---CCEEEEEeC---C-eEEEEeCCCCe----------eeecCC---
Q psy11524        146 YK-ASFVWDTDGRQLYSSLTHDHPISSLAWAPG---GDMFAVGSY---N-TLRLCDKVGWS----------HSLDKP---  204 (323)
Q Consensus       146 i~-~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~---~~~l~~~~~---~-~i~i~d~~~~~----------~~~~~~---  204 (323)
                      |. .+.+|..+.+.-..+++|.+....+.+.-+   .+.|+.+..   + .+++.++....          .....+   
T Consensus       174 i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea  253 (327)
T d1utca2         174 VVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA  253 (327)
T ss_dssp             EEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTC
T ss_pred             eeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccc
Confidence            22 344999998888888888776655554322   124444443   3 88999874311          111111   


Q ss_pred             CCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCCCeE
Q psy11524        205 DTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLY  278 (323)
Q Consensus       205 ~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~  278 (323)
                      ..+-..++..++.-..+..-+.-| |++||++++.++...++.  ...|...+-+...    +-+...+.+|.+.
T Consensus       254 ~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs--~~~iF~~a~~~~~----~Gi~~VNr~GqVl  322 (327)
T d1utca2         254 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEAT----AGIIGVNRKGQVL  322 (327)
T ss_dssp             TTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEEETTT----TEEEEEETTSEEE
T ss_pred             cCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecC--CCceEEeccCCCC----ceEEEECCCCeEE
Confidence            234577888999888899999999 999999999998874333  3445444434433    2344444555543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.56  E-value=0.44  Score=38.44  Aligned_cols=100  Identities=8%  Similarity=0.033  Sum_probs=60.0

Q ss_pred             CEEEEEEcCCCCeEEEEee----CCeEEEEeCCCCcee---EeeccCCCeEEEEECCCCCEEEEEcCC------------
Q psy11524         83 PVYSAAWSPDSNKVLLTQA----KSLVIKPLSPNNKAT---KWQAHDGLILKVAWCSSTDLILSGGED------------  143 (323)
Q Consensus        83 ~v~~~~~sp~~~~l~~~~~----~~~~v~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d------------  143 (323)
                      .+...++||+++++|.+-+    +...+++.|+.++..   .+..  .....++|++|++.|+....+            
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~  203 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS  203 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccccccc
Confidence            3456789999999997753    335789999887721   2221  122468999999977654432            


Q ss_pred             -CceEeeeEEeCCC---CeeeEeecC--CCceeEEEEecCCCEEEEE
Q psy11524        144 -CKYKASFVWDTDG---RQLYSSLTH--DHPISSLAWAPGGDMFAVG  184 (323)
Q Consensus       144 -~~i~~i~v~d~~~---~~~~~~~~~--~~~v~~~~~~p~~~~l~~~  184 (323)
                       +.-..++.+.+..   .....+...  ...+..+..++++++++..
T Consensus       204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             cCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence             1112334777632   122223322  2345677788999986643

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.34  E-value=0.23  Score=39.21  Aligned_cols=113  Identities=12%  Similarity=0.046  Sum_probs=69.7

Q ss_pred             EEEEECCCCCEEEEEcCC--------CceEeeeEEeCCCCeeeE----eecCCCceeEEEEecCCCEEEEEeCC--eEEE
Q psy11524        126 LKVAWCSSTDLILSGGED--------CKYKASFVWDTDGRQLYS----SLTHDHPISSLAWAPGGDMFAVGSYN--TLRL  191 (323)
Q Consensus       126 ~~~~~~~~~~~l~~~~~d--------~~i~~i~v~d~~~~~~~~----~~~~~~~v~~~~~~p~~~~l~~~~~~--~i~i  191 (323)
                      .......+|+.++.|+.+        +....+.+||+....-..    ...+.......++.++|++++.|+.+  .+.+
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~  102 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  102 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence            334445678887777642        122234489995332211    12233334567888999999988773  8999


Q ss_pred             EeCCCCeeeecCC--CCccEEEEEEcCCCCEEEEEecC------c-EEEEEcCCCc
Q psy11524        192 CDKVGWSHSLDKP--DTGSVYDLVWSNDATQIAGACAN------V-IHIFDISSSS  238 (323)
Q Consensus       192 ~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d------~-i~iwd~~~~~  238 (323)
                      ||..+..-.....  ....-..++..+||+.++.++.+      . +.+||..+.+
T Consensus       103 yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         103 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            9987554332221  22234567778899988887642      3 7899977654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.08  E-value=0.47  Score=35.92  Aligned_cols=219  Identities=12%  Similarity=0.102  Sum_probs=127.8

Q ss_pred             EEEEcCCCCeEEEEeeCCeEEEEeCCCCc--eeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCC--CCeeeE
Q psy11524         86 SAAWSPDSNKVLLTQAKSLVIKPLSPNNK--ATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTD--GRQLYS  161 (323)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~--~~~~~~  161 (323)
                      +.-.+|..+.||.-+.  ..+.+++++.+  +... .....|.==.|-.+ +.|+... +..|+   -|+++  ..+.+.
T Consensus        67 sAIMhP~~~IiALrag--~~LQiFnletK~klks~-~~~e~VvfWkWis~-~~L~lVT-~taVY---HW~~~g~s~P~k~  138 (327)
T d1utca2          67 SAIMNPASKVIALKAG--KTLQIFNIEMKSKMKAH-TMTDDVTFWKWISL-NTVALVT-DNAVY---HWSMEGESQPVKM  138 (327)
T ss_dssp             EEEECSSSSEEEEEET--TEEEEEETTTTEEEEEE-ECSSCCCEEEESSS-SEEEEEC-SSEEE---EEESSSSCCCEEE
T ss_pred             hhhcCCCCcEEEEecC--CeEEEEehhHhhhhceE-EcCCCcEEEEecCC-CEEEEEc-CCceE---EEcccCCCCchhh
Confidence            3445688877776553  37888888776  3333 23456655677654 4455444 44566   99995  345555


Q ss_pred             eecCC----CceeEEEEecCCCEEEEEe----C----CeEEEEeCCCCeeeecCCCCccEEEEEEcCCC---CEEEEEec
Q psy11524        162 SLTHD----HPISSLAWAPGGDMFAVGS----Y----NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDA---TQIAGACA  226 (323)
Q Consensus       162 ~~~~~----~~v~~~~~~p~~~~l~~~~----~----~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~  226 (323)
                      +..|.    ..|..-..+++.++++..+    .    |.+.+|..+....+.+.+|.+....+.+.-+.   +.++.+..
T Consensus       139 fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r  218 (327)
T d1utca2         139 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR  218 (327)
T ss_dssp             EECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred             hhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEEC
Confidence            55443    4677778888999866543    1    36889999888888888887766665554221   23333322


Q ss_pred             ---Cc-EEEEEcCCCce---e-----eeecCC--CCccceEEEEEccCCCCccceEEEEeCCCCeEEEecccc----cCC
Q psy11524        227 ---NV-IHIFDISSSSS---S-----NVTAPL--SHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS----LDK  288 (323)
Q Consensus       227 ---d~-i~iwd~~~~~~---~-----~~~~~~--~~~~~v~~~~~~p~g~~~d~~l~~~~~~~~~~~~~~~~~----~~~  288 (323)
                         .+ +++.++.....   .     ..+.+.  ....-.-++..++.-    +.+.+...-|.+.++++.++    ..+
T Consensus       219 ~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~ky----giiyviTK~G~i~lyDleTgt~i~~nR  294 (327)
T d1utca2         219 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH----DVVFLITKYGYIHLYDLETGTCIYMNR  294 (327)
T ss_dssp             ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTT----TEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccC----CEEEEEecCcEEEEEEcccccEEEEee
Confidence               24 88888765321   0     010011  112233456666665    78888888888888888874    112


Q ss_pred             CCccceeEEEEeeCCCeeEeeecCCeEE
Q psy11524        289 PDTGSVYDLVWSSDATQIAGACANGSLL  316 (323)
Q Consensus       289 ~~~~~v~~~~~s~~g~~l~s~~~dg~i~  316 (323)
                      ...+.|-.-+-+....-+++...+|.|.
T Consensus       295 Is~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         295 ISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             cCCCceEEeccCCCCceEEEECCCCeEE
Confidence            2234444333333333455555666654

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.34  E-value=0.86  Score=35.51  Aligned_cols=177  Identities=11%  Similarity=0.088  Sum_probs=103.6

Q ss_pred             CCCCEEEEEcCCCceEeeeEEeCCCCeeeEeecCCCceeEEEEec----C--CCEEEEEeC-----CeEEEEeCC--CCe
Q psy11524        132 SSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAP----G--GDMFAVGSY-----NTLRLCDKV--GWS  198 (323)
Q Consensus       132 ~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p----~--~~~l~~~~~-----~~i~i~d~~--~~~  198 (323)
                      |+..+++...+.+-+.   +||++++.+..+.  .+.++.+..-.    +  ...+++++.     .+|.+|.+.  ...
T Consensus        38 p~~SlI~gTdK~~Gl~---vYdL~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~  112 (353)
T d1h6la_          38 PQNSKLITTNKKSGLA---VYSLEGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT  112 (353)
T ss_dssp             GGGCEEEEEETTSCCE---EEETTCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTE
T ss_pred             cCccEEEEEcCcCCEE---EEcCCCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccc
Confidence            3456777777777788   9999999988765  35566665432    2  223555553     267788764  223


Q ss_pred             eeecCCC-------CccEEEEEE--cCC-CC-EEEEEecCc-EEEEEcC---CCc----eeeeecCCCCccceEEEEEcc
Q psy11524        199 HSLDKPD-------TGSVYDLVW--SND-AT-QIAGACANV-IHIFDIS---SSS----SSNVTAPLSHSHEITQLAVNQ  259 (323)
Q Consensus       199 ~~~~~~~-------~~~v~~~~~--~~~-~~-~l~~~~~d~-i~iwd~~---~~~----~~~~~~~~~~~~~v~~~~~~p  259 (323)
                      +......       ...++.+|+  +|. |. ++++...++ +..|.+.   .+.    .+++   ......+..+.+.+
T Consensus       113 l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~---f~~~~q~EGCVvDd  189 (353)
T d1h6la_         113 LQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRA---FKMNSQTEGMAADD  189 (353)
T ss_dssp             EEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEE---EECSSCEEEEEEET
T ss_pred             cccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeec---cCCCCccceEEEeC
Confidence            3322211       123667776  664 54 455556677 8877653   332    2333   12345688888888


Q ss_pred             CCCCccceEEEEeCCCCeEEEecccc----------cCC-CCccceeEEEEee--CCC--eeEeeecCCeEEEEEe
Q psy11524        260 TGSLQERHVAFIDKNRDLYLSMWSHS----------LDK-PDTGSVYDLVWSS--DAT--QIAGACANGSLLLGTI  320 (323)
Q Consensus       260 ~g~~~d~~l~~~~~~~~~~~~~~~~~----------~~~-~~~~~v~~~~~s~--~g~--~l~s~~~dg~i~~~~l  320 (323)
                      ..    +.|.+...+..+..+.....          ... .-...+..++.-.  ++.  +|+|.-.+++..+|+.
T Consensus       190 e~----~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr  261 (353)
T d1h6la_         190 EY----GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYER  261 (353)
T ss_dssp             TT----TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred             CC----CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEec
Confidence            87    89999988776655544321          111 1145667776543  333  4445556778888875

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.19  E-value=1.1  Score=36.32  Aligned_cols=55  Identities=16%  Similarity=0.111  Sum_probs=38.2

Q ss_pred             CccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecC------CCCccceEEEEEccC
Q psy11524        206 TGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAP------LSHSHEITQLAVNQT  260 (323)
Q Consensus       206 ~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~------~~~~~~v~~~~~~p~  260 (323)
                      -...++++|.|+|+++++--..| |++++..+++......+      .........++|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            35678999999998777665568 99998777754332111      122356788999996

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.04  E-value=1.6  Score=34.36  Aligned_cols=174  Identities=11%  Similarity=0.040  Sum_probs=94.0

Q ss_pred             CCEEEEEEcCCCCeEEEEeeCCeEEEEeCCC-----------CceeEeeccCCCeEEEEECCCCCEEEEEcCCCceEeee
Q psy11524         82 PPVYSAAWSPDSNKVLLTQAKSLVIKPLSPN-----------NKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASF  150 (323)
Q Consensus        82 ~~v~~~~~sp~~~~l~~~~~~~~~v~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~i~  150 (323)
                      ....-++.++....+++|+.+.  +.+..+.           +........-..|..++|+.|  .|+.. .++.+.   
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~--l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~---  108 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK--AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALY---  108 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE--EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEE---
T ss_pred             cccceEEEeCCCCEEEEECCCE--EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEE---
Confidence            4456788888777777766553  3343211           111111112236888999754  45544 345566   


Q ss_pred             EEeCC-CCeeeEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCCee-eecC-----CCCccEEEEEEcCCCCEEE
Q psy11524        151 VWDTD-GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGWSH-SLDK-----PDTGSVYDLVWSNDATQIA  222 (323)
Q Consensus       151 v~d~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~-~~~~-----~~~~~v~~~~~~~~~~~l~  222 (323)
                      .++.. -...........++.++.++|.  .++.... +.+.++++..... ....     .-.+.+.+++|++.|+.++
T Consensus       109 ~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v  186 (381)
T d1xipa_         109 SLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSF  186 (381)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEE
T ss_pred             EEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEE
Confidence            77764 2333333344567888888775  3444444 5888888764322 1111     1235678888888888887


Q ss_pred             EEecCcEEEE-EcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEE
Q psy11524        223 GACANVIHIF-DISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFI  271 (323)
Q Consensus       223 ~~~~d~i~iw-d~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~  271 (323)
                      ++..+...+- ++.....+..  .......+.++.|-.+.    ..++++
T Consensus       187 ~~~g~~~q~k~~i~~~~~~~~--p~~~~~~v~sI~WL~~~----~F~vvy  230 (381)
T d1xipa_         187 AWRNGEMEKQFEFSLPSELEE--LPVEEYSPLSVTILSPQ----DFLAVF  230 (381)
T ss_dssp             EEETTEEEEEEEECCCHHHHT--SCTTTSEEEEEEESSSS----EEEEEE
T ss_pred             EeCCCceeeccCCCCccccCC--CcCCCcceeEEEEecCc----eEEEEE
Confidence            7754433322 2222222221  12334567788887654    444444

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.66  E-value=2  Score=34.43  Aligned_cols=216  Identities=8%  Similarity=-0.022  Sum_probs=107.1

Q ss_pred             cccceeEeeEeccCCcceeeeeeccccc-cccceeeecC--------CCCCEEEEEEcCCCCeEEEEeeCC---------
Q psy11524         42 RYDGTVINYPISPYISVLHSYAASHSWP-QALSLCRTLN--------VSPPVYSAAWSPDSNKVLLTQAKS---------  103 (323)
Q Consensus        42 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~~v~~~~~sp~~~~l~~~~~~~---------  103 (323)
                      ++.-.+....+||+++.++..+..++-+ -.+++...-.        .......++|++|++.|+....+.         
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccc
Confidence            3444455678899998887555544322 2222211110        111225688999999988764321         


Q ss_pred             ------eEEEEeCCCCc----eeEeeccC--CCeEEEEECCCCCEEEEEcC---CCceEeeeEEeCCC--C-------ee
Q psy11524        104 ------LVIKPLSPNNK----ATKWQAHD--GLILKVAWCSSTDLILSGGE---DCKYKASFVWDTDG--R-------QL  159 (323)
Q Consensus       104 ------~~v~~~~~~~~----~~~~~~~~--~~v~~~~~~~~~~~l~~~~~---d~~i~~i~v~d~~~--~-------~~  159 (323)
                            ..++.+.+.+.    ...+....  ..+..+..++++++++....   +.... +++.++..  .       ..
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~  280 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNR-LWYCDLQQESNGITGILKWV  280 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCE-EEEEEGGGSSSSSCSSCCCE
T ss_pred             cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEE-EEEeeCCCccccccccccee
Confidence                  25666666554    23333332  34667788999998764332   23333 22445421  1       11


Q ss_pred             eEeecCCCceeEEEEecCCCEEEEEeC---C-eEEEEeCCCCe----eeecCCCCccEEEEEEcCCCCEEEEE-ecCc--
Q psy11524        160 YSSLTHDHPISSLAWAPGGDMFAVGSY---N-TLRLCDKVGWS----HSLDKPDTGSVYDLVWSNDATQIAGA-CANV--  228 (323)
Q Consensus       160 ~~~~~~~~~v~~~~~~p~~~~l~~~~~---~-~i~i~d~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--  228 (323)
                      ...........-+ -+.++.+++....   + .|...++....    ...+..+...+..-.+...+.+|+.. ..++  
T Consensus       281 ~~~~~~~~~~~~~-~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~  359 (430)
T d1qfma1         281 KLIDNFEGEYDYV-TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN  359 (430)
T ss_dssp             EEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred             EeecccccceEEE-ecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEe
Confidence            1122222223322 2223333333332   2 56666655321    12333344445444444444456544 4555  


Q ss_pred             -EEEEEcCCCceeeeecCCCCccceEEEEEccCC
Q psy11524        229 -IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTG  261 (323)
Q Consensus       229 -i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g  261 (323)
                       |++++..+++....  .....+.+..+...++.
T Consensus       360 ~l~v~~~~~~~~~~~--~~~~~~sv~~~~~~~~~  391 (430)
T d1qfma1         360 TLQLHDLATGALLKI--FPLEVGSVVGYSGQKKD  391 (430)
T ss_dssp             EEEEEETTTCCEEEE--ECCCSSEEEEEECCTTC
T ss_pred             EEEEEECCCCcEEEe--cCCCCceEeeccCCCCC
Confidence             89999988876554  33334555555444443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.76  E-value=2.2  Score=32.98  Aligned_cols=99  Identities=6%  Similarity=-0.041  Sum_probs=62.6

Q ss_pred             CCeEEEEECCCCCEEEEEcC---------------CCceEeeeEEeCCCCeeeEeecCCCceeEEEEecCCCEEEEEeC-
Q psy11524        123 GLILKVAWCSSTDLILSGGE---------------DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-  186 (323)
Q Consensus       123 ~~v~~~~~~~~~~~l~~~~~---------------d~~i~~i~v~d~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-  186 (323)
                      ...+++++..++..++|-..               -+...   +|..+++........-...+.++++||+++|+++.. 
T Consensus       150 ~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~---v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~  226 (340)
T d1v04a_         150 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSF---VTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELL  226 (340)
T ss_dssp             SSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEE---EEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             cCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCcee---EEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCC
Confidence            45788999888888877321               12233   444444444444444456889999999999888877 


Q ss_pred             C-eEEEEeCCCC-eee--ecCCCCccEEEEEEcC-CCCEEEEE
Q psy11524        187 N-TLRLCDKVGW-SHS--LDKPDTGSVYDLVWSN-DATQIAGA  224 (323)
Q Consensus       187 ~-~i~i~d~~~~-~~~--~~~~~~~~v~~~~~~~-~~~~l~~~  224 (323)
                      . +|+.|++.+. ...  ........+-.+.+.+ +|.+.+.+
T Consensus       227 ~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         227 AHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             CCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            4 9999997643 221  1222455677888876 45444433

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.44  E-value=2.3  Score=35.52  Aligned_cols=53  Identities=6%  Similarity=-0.040  Sum_probs=34.0

Q ss_pred             CCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeC
Q psy11524        217 DATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDK  273 (323)
Q Consensus       217 ~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~  273 (323)
                      .|.++++++.|+ ++.+|.++|+.+-++.+..... -.-+.|..+|+   ++|++...
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~-~~P~ty~~~Gk---QYv~v~~G  540 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVV-AAPSTYMVDGR---QYVSVAVG  540 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC-SCCEEEEETTE---EEEEEEEC
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCcc-ccCEEEEECCE---EEEEEEeC
Confidence            566788888999 9999999999998743332111 11144455663   56666544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.22  E-value=3  Score=33.59  Aligned_cols=53  Identities=9%  Similarity=0.159  Sum_probs=38.6

Q ss_pred             CCCeEEEEECCCCCEEEEEcCCCceEeeeEEeCCCCeeeEeec---------CCCceeEEEEecC
Q psy11524        122 DGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLT---------HDHPISSLAWAPG  177 (323)
Q Consensus       122 ~~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~~~~~~~~~~~---------~~~~v~~~~~~p~  177 (323)
                      -...++|+|.|||+++++--..|+|+   +++..+.....+..         .......|+|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~---~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKIL---RVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEE---EECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEE---EEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            35678999999999888776689999   99876544433321         2346789999995

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=91.21  E-value=1.6  Score=36.40  Aligned_cols=55  Identities=11%  Similarity=0.066  Sum_probs=34.5

Q ss_pred             CCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCCC
Q psy11524        217 DATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNR  275 (323)
Q Consensus       217 ~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~~  275 (323)
                      .+.++++++.|+ ++-+|.++|+.+-++.+... ..-.-+.+..+|+   ++|++....+
T Consensus       468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~-~~~~P~ty~~dGk---qyv~v~aG~g  523 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSG-IVAAPMTFELAGR---QYVAIMAGWG  523 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSC-CCSCCEEEEETTE---EEEEEEECCC
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEeEEEECCCC-ccccCEEEEECCE---EEEEEEeCCC
Confidence            455777888999 99999999999987433321 1111244455663   5666654433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.76  E-value=2.1  Score=35.84  Aligned_cols=54  Identities=7%  Similarity=-0.100  Sum_probs=34.8

Q ss_pred             CCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCccceEEEEeCC
Q psy11524        217 DATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKN  274 (323)
Q Consensus       217 ~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d~~l~~~~~~  274 (323)
                      .+.++++++.|+ ++-+|.++|+.+-++.+... ..-.-+.|..+|+   .+|++...-
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~-~~a~P~ty~~dGk---qYi~v~~g~  528 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSG-GIGSPMTYSFKGK---QYIGSMYGV  528 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSC-CCSCCEEEEETTE---EEEEEEECC
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECCCC-ceecceEEEECCE---EEEEEEecc
Confidence            355777888999 99999999999887433321 1122244555773   677665543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.49  E-value=3.2  Score=32.57  Aligned_cols=175  Identities=10%  Similarity=0.006  Sum_probs=97.0

Q ss_pred             CCeEEEEECCCCCEEEEEcCCCceEeeeEEeC----------CCCeeeEeecCCCceeEEEEecCCCEEEEEeCCeEEEE
Q psy11524        123 GLILKVAWCSSTDLILSGGEDCKYKASFVWDT----------DGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLC  192 (323)
Q Consensus       123 ~~v~~~~~~~~~~~l~~~~~d~~i~~i~v~d~----------~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~i~i~  192 (323)
                      ....-++.++...++++|+.++ +.   |...          .+.........-..|..++|+.  ..++....+.+..+
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~---V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~--d~l~v~~~~~l~~~  110 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AV---VGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHG--DQVLVSTRNALYSL  110 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EE---EEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEET--TEEEEEESSEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EE---EEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeC--CEEEEEeCCCEEEE
Confidence            3455678887777788777775 55   5553          0111111111123588899974  45777666678888


Q ss_pred             eCCCC-eeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeec---CCCCccceEEEEEccCCCCccce
Q psy11524        193 DKVGW-SHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTA---PLSHSHEITQLAVNQTGSLQERH  267 (323)
Q Consensus       193 d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~p~g~~~d~~  267 (323)
                      +.... ..........++..+.++|.  .++....++ +.++++..++......   -..-.+.+.+++|++.|    ..
T Consensus       111 ~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kg----kq  184 (381)
T d1xipa_         111 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRS----FQ  184 (381)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSC----EE
T ss_pred             EeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCc----EE
Confidence            86532 22222223456888888875  466666778 9999998876433200   00112456777787776    55


Q ss_pred             EEEEeCCCCeEEEecccc--c--CCCCccceeEEEEeeCCCeeEee
Q psy11524        268 VAFIDKNRDLYLSMWSHS--L--DKPDTGSVYDLVWSSDATQIAGA  309 (323)
Q Consensus       268 l~~~~~~~~~~~~~~~~~--~--~~~~~~~v~~~~~s~~g~~l~s~  309 (323)
                      +.+++.+....--++...  +  .......|.++.|-.+..++++-
T Consensus       185 ~v~~~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         185 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEEeCCCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            555533221111111111  1  11124568899998777666644

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=88.43  E-value=4.4  Score=31.34  Aligned_cols=139  Identities=12%  Similarity=0.064  Sum_probs=79.7

Q ss_pred             CCCeEEEEeeCCeEEEEeCCCCceeEeeccCCCeEEEEECC------CCCEEEEEc-C-CC--ceEeeeEEeCC--CCee
Q psy11524         92 DSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCS------STDLILSGG-E-DC--KYKASFVWDTD--GRQL  159 (323)
Q Consensus        92 ~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~-~-d~--~i~~i~v~d~~--~~~~  159 (323)
                      +...++ |..+++-|++|++.++..... ..++++.+..-.      ...-+++++ + ++  +|.   +|.+.  ...+
T Consensus        39 ~~SlI~-gTdK~~Gl~vYdL~G~~l~~~-~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~---~~~id~~~~~l  113 (353)
T d1h6la_          39 QNSKLI-TTNKKSGLAVYSLEGKMLHSY-HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIE---IYAIDGKNGTL  113 (353)
T ss_dssp             GGCEEE-EEETTSCCEEEETTCCEEEEC-CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEE---EEEEETTTTEE
T ss_pred             CccEEE-EEcCcCCEEEEcCCCcEEEec-ccCCcCccccccccccCCcceEEEEEeCCcCcceeEE---EEEecCccccc
Confidence            344454 555555699999988754443 235555554432      222344444 2 23  454   77663  3444


Q ss_pred             eEeecC-------CCceeEEEE--ec-CCCEEEEEeC--CeEEEEeCC---CCe----eeecCCCCccEEEEEEcCCCCE
Q psy11524        160 YSSLTH-------DHPISSLAW--AP-GGDMFAVGSY--NTLRLCDKV---GWS----HSLDKPDTGSVYDLVWSNDATQ  220 (323)
Q Consensus       160 ~~~~~~-------~~~v~~~~~--~p-~~~~l~~~~~--~~i~i~d~~---~~~----~~~~~~~~~~v~~~~~~~~~~~  220 (323)
                      ..+...       ...+..+++  +| +|...+....  +.+..|.+.   ...    ..........+..+++.+....
T Consensus       114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~  193 (353)
T d1h6la_         114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGS  193 (353)
T ss_dssp             EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred             ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCc
Confidence            433221       224677777  56 4665555554  477777642   111    1112234567899999999889


Q ss_pred             EEEEecCc-EEEEEcC
Q psy11524        221 IAGACANV-IHIFDIS  235 (323)
Q Consensus       221 l~~~~~d~-i~iwd~~  235 (323)
                      |+.+-++. |+.++..
T Consensus       194 LyisEE~~Giw~~~a~  209 (353)
T d1h6la_         194 LYIAEEDEAIWKFSAE  209 (353)
T ss_dssp             EEEEETTTEEEEEESS
T ss_pred             EEEecCccceEEEEec
Confidence            99998887 8888754

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.85  E-value=0.56  Score=39.68  Aligned_cols=85  Identities=8%  Similarity=-0.037  Sum_probs=50.0

Q ss_pred             CeEEEEeCCCCeeeecCCCCccEEEEEEcCCCCEEEEEecCc-EEEEEcCCCceeeeecCCCCccceEEEEEccCCCCcc
Q psy11524        187 NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANV-IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQE  265 (323)
Q Consensus       187 ~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~~~d  265 (323)
                      +.+.-||+.+.++.....+..+..+-..+-.|.+++.|+.|+ ++-+|.++|+.+-++.+... ..-.-+.|..+|+   
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~-~~a~P~tY~~dGk---  528 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG-AIGYPMTYTHKGT---  528 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC-CCSCCEEEEETTE---
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCC-cccCCeEEEECCE---
Confidence            367888877554432222222222222233566888899999 99999999999987433321 1112244555773   


Q ss_pred             ceEEEEeCCC
Q psy11524        266 RHVAFIDKNR  275 (323)
Q Consensus       266 ~~l~~~~~~~  275 (323)
                      ++|++...-+
T Consensus       529 QYvav~~G~g  538 (596)
T d1w6sa_         529 QYVAIYYGVG  538 (596)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEEEEecCC
Confidence            6777765443

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=86.07  E-value=4.4  Score=28.84  Aligned_cols=168  Identities=15%  Similarity=0.066  Sum_probs=79.1

Q ss_pred             CceEeeeEEeCC--CCeeeEeecCCCceeEEEEecCCCEEEEEeC-CeEEEEeCCCCeeeecC--CCCccEEEEEEcCCC
Q psy11524        144 CKYKASFVWDTD--GRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGWSHSLDK--PDTGSVYDLVWSNDA  218 (323)
Q Consensus       144 ~~i~~i~v~d~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~  218 (323)
                      ....+|++-++.  +++.+.-....-.|.+++.. +.+...+|+. |...+|-+.+..+..+.  +.-+-|+.+    .+
T Consensus        79 kE~Hai~~~Nlk~~GEE~~i~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI----~~  153 (313)
T d2hu7a1          79 AEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDI----RG  153 (313)
T ss_dssp             SCCEEEEEEETTSTTCEEECTTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEE----ET
T ss_pred             cceeeEEEEccCCCCeeeEecCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEec----cC
Confidence            444555577775  44433323233567777775 4456666666 67788887766544322  122223333    23


Q ss_pred             CEEEEEe--cCc---EEEEEcCCCceeeeecCCCCccceEEEEEccCCC-------CccceEEEEeCCC-CeEEEecccc
Q psy11524        219 TQIAGAC--ANV---IHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGS-------LQERHVAFIDKNR-DLYLSMWSHS  285 (323)
Q Consensus       219 ~~l~~~~--~d~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~g~-------~~d~~l~~~~~~~-~~~~~~~~~~  285 (323)
                      ++++-.+  ..+   ..+=|+.+|...-   +....+.++.....+..+       ..+.+....|... ...-.++...
T Consensus       154 d~I~G~g~~~g~~~sfF~adl~SG~lri---~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~k  230 (313)
T d2hu7a1         154 DLIAGLGFFGGGRVSLFTSNLSSGGLRV---FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSK  230 (313)
T ss_dssp             TEEEEEEEEETTEEEEEEEETTTEEEEE---ECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSC
T ss_pred             CeEEEEeeecCCcceEEEEecccCCEEE---ecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcc
Confidence            3333211  011   2222443333221   233444455554554431       0012222333322 1111111110


Q ss_pred             -cCCCCccceeEEEEeeCCCeeEeeecCCeEEEEE
Q psy11524        286 -LDKPDTGSVYDLVWSSDATQIAGACANGSLLLGT  319 (323)
Q Consensus       286 -~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~~~~  319 (323)
                       +.......|.-+-+.|++++++.+-.||.-+++.
T Consensus       231 d~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         231 DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             cceeecceEEEeeeeCCCCcEEEEEecCCchheee
Confidence             1111123455566899999889999999877763