Psyllid ID: psy1153

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MIKELLDTRIRPTVQEDGGDIQFISFQDGVLEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGLNME
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHHcccccEEEEEEEccEEEEEEccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHccccccHHcccccEEEEEEEccEEEEEEEccccccccHHHHHHHHHHHHHHHHcccccccEEcc
Secondary Structure Prediction (SSPRO)
cHHHHHcccccccEccccccccHcccccccEEccccccccccHHHHHccHHHHHHHcccccEEEEEcccEEEEEcccccccHHHccHHHHHHHHHHHHccccEEccccccccccccccHHHHHHHHHHHHHccccccEHcccccEEEEcccccEEEEEEEcccccccccHHHHHHHHHHHHHHHccccccEEEEc
Coil and Loop (DISEMBL)
MIKELldtrirptvqedggdiqfisfqdgvleepgqtidfptgqaaycsplGKLLFRIEGvksvffghdfitvtkqdddvdwklLKPEIFATIMDFfssglpvltdaqpssdtviheddDETVQMIKELLDtrirptvqedggdiqfiSFQGGVVKlkmqgsctscpssVVTLKNGVQNMLQFyipettpglnme
Flexible Loop (DISEMBL)
mikelldtrirptvqedggdiqFISFQDGVLEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFitvtkqdddvdWKLLKPEIFATIMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFyipettpglnme
Low Complexity Region (SEG)
MIKELLDTRIRPTVQEDGGDIQFISFQDGVLEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGLNME
Disordered region (IsUnstruct)
*****************GGDIQFISFQDGVLEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIMDFFSSGLPVLTD***************TVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIP*********
Disordered Region (DISOPRED)
MIKELLDTRIRPTVQEDGGDIQFISFQDGVLEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIMDFFSSGL****************DDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGLNME
Disordered Region (DISEMBL)
MIKELLDTRIRPTVQEDGGDIQFISFQDGVLEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGLNME
Disordered Region (DISPRO)
MIKELLDTRIRPTVQEDGGDIQFISFQDGVLEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIMDFFSSGLPVLTDA*******IHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGLNME
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIKELLDTRIRPTVQEDGGDIQFISFQDGVLEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGLNME
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
B4H303	282	NFU1 iron-sulfur cluster	N/A	N/A	0.779	0.539	0.745	8e-66
B4JWR9	298	NFU1 iron-sulfur cluster	N/A	N/A	0.779	0.510	0.745	8e-66
B5DKJ8	286	NFU1 iron-sulfur cluster	yes	N/A	0.779	0.531	0.745	1e-65
B4M375	298	NFU1 iron-sulfur cluster	N/A	N/A	0.779	0.510	0.732	3e-65
Q8SY96	283	NFU1 iron-sulfur cluster	yes	N/A	0.779	0.537	0.758	4e-65
B4PZ52	283	NFU1 iron-sulfur cluster	N/A	N/A	0.779	0.537	0.751	5e-65
B4IMF6	283	NFU1 iron-sulfur cluster	N/A	N/A	0.779	0.537	0.758	5e-65
B4R3T1	283	NFU1 iron-sulfur cluster	N/A	N/A	0.779	0.537	0.758	9e-65
B3NYF7	283	NFU1 iron-sulfur cluster	N/A	N/A	0.779	0.537	0.751	9e-65
B4NE93	289	NFU1 iron-sulfur cluster	N/A	N/A	0.779	0.525	0.738	4e-64

>sp|B4H303|NFU1_DROPE NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila persimilis GN=GL13432 PE=3 SV=1

 Score =  249 bits (636), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 114/153 (74%), Positives = 137/153 (89%), Gaps = 1/153 (0%)

Query: 35  GQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIM 94
           G T DFP+G AA+CSPL KLLFR+EGV++VFFG DFIT++K++   +W L+KPE+FA IM
Sbjct: 88  GNTYDFPSGTAAHCSPLAKLLFRVEGVRAVFFGSDFITISKEES-AEWSLIKPEVFAVIM 146

Query: 95  DFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGV 154
           DFF+SGLP+L +A+P++DT I +DDDETV MIKELLDTRIRPTVQEDGGDI FIS++ GV
Sbjct: 147 DFFASGLPILHEARPNADTEILDDDDETVMMIKELLDTRIRPTVQEDGGDIVFISYENGV 206

Query: 155 VKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
           VKLKMQGSC+SCPSS+VTLKNGVQNMLQFYIPE
Sbjct: 207 VKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPE 239

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.
Drosophila persimilis (taxid: 7234)

>sp|B4JWR9|NFU1_DROGR NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila grimshawi GN=GH17809 PE=3 SV=1

 Score =  249 bits (636), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 114/153 (74%), Positives = 137/153 (89%), Gaps = 1/153 (0%)

Query: 35  GQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIM 94
           G T DFP+  AA+CSPL KLLFR+EGV++VFFG DFIT++K+++  +W L+KPE+FA IM
Sbjct: 104 GNTYDFPSATAAHCSPLAKLLFRVEGVRAVFFGSDFITISKEENG-EWGLIKPEVFAVIM 162

Query: 95  DFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGV 154
           DFF+SGLP+L +A+P++DT I EDDDETV MIKELLDTRIRPTVQEDGGDI FIS++ GV
Sbjct: 163 DFFASGLPILHEARPNADTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFISYEKGV 222

Query: 155 VKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
           VKLKMQGSC+SCPSS+VTLKNGVQNMLQFYIPE
Sbjct: 223 VKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPE 255

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila grimshawi (taxid: 7222)

>sp|B5DKJ8|NFU1_DROPS NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=GA22888 PE=3 SV=1

 Score =  249 bits (635), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 114/153 (74%), Positives = 137/153 (89%), Gaps = 1/153 (0%)

Query: 35  GQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIM 94
           G T DFP+G AA+CSPL KLLFR+EGV++VFFG DFIT++K++   +W L+KPE+FA IM
Sbjct: 92  GNTYDFPSGTAAHCSPLAKLLFRVEGVRAVFFGSDFITISKEES-AEWSLIKPEVFAVIM 150

Query: 95  DFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGV 154
           DFF+SGLP+L +A+P++DT I +DDDETV MIKELLDTRIRPTVQEDGGDI FIS++ GV
Sbjct: 151 DFFASGLPILHEARPNADTEILDDDDETVMMIKELLDTRIRPTVQEDGGDIVFISYENGV 210

Query: 155 VKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
           VKLKMQGSC+SCPSS+VTLKNGVQNMLQFYIPE
Sbjct: 211 VKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPE 243

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4M375|NFU1_DROVI NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila virilis GN=GJ19011 PE=3 SV=1

 Score =  247 bits (631), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 112/153 (73%), Positives = 136/153 (88%), Gaps = 1/153 (0%)

Query: 35  GQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIM 94
           G T DFP+G AA+CSPL KLLFR+EGV++VFFG DFIT++K++   +W L+KPE+FA IM
Sbjct: 100 GNTYDFPSGSAAHCSPLAKLLFRVEGVRAVFFGGDFITISKEESG-EWGLIKPEVFAVIM 158

Query: 95  DFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGV 154
           DFF+SGLPV+ +A+P++DT I EDDDETV MIKELLDTRIRPTVQEDGGDI F+ ++ G+
Sbjct: 159 DFFASGLPVIHEARPNADTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGYENGI 218

Query: 155 VKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
           VKLKMQGSC+SCPSS+VTLKNGVQNMLQFYIPE
Sbjct: 219 VKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPE 251

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila virilis (taxid: 7244)

>sp|Q8SY96|NFU1_DROME NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila melanogaster GN=CG32500 PE=2 SV=1

 Score =  247 bits (630), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 116/153 (75%), Positives = 133/153 (86%), Gaps = 1/153 (0%)

Query: 35  GQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIM 94
           G T DFP G  A+ SPL KLLFR+EGVK VFFG DF+T++KQ+   +W L+KPE+FA IM
Sbjct: 92  GNTYDFPNGTTAHNSPLAKLLFRVEGVKGVFFGADFVTISKQEG-AEWSLIKPEVFAVIM 150

Query: 95  DFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGV 154
           DFF+SGLPVL DAQP++DT I EDDDETV MIKELLDTRIRPTVQEDGGDI F+ ++GGV
Sbjct: 151 DFFASGLPVLNDAQPNADTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGYEGGV 210

Query: 155 VKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
           VKLKMQGSC+SCPSS+VTLKNGVQNMLQFYIPE
Sbjct: 211 VKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPE 243

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila melanogaster (taxid: 7227)

>sp|B4PZ52|NFU1_DROYA NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila yakuba GN=GE15286 PE=3 SV=1

 Score =  246 bits (629), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 115/153 (75%), Positives = 132/153 (86%), Gaps = 1/153 (0%)

Query: 35  GQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIM 94
           G T DFP G  A+ SPL KLLFR+EGVK VFFG DF+T++KQ+   +W L+KPE+FA IM
Sbjct: 92  GNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFFGADFVTISKQEG-AEWSLIKPEVFAVIM 150

Query: 95  DFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGV 154
           DFF+SGLPVL DAQP++DT I EDDDETV MIKELLDTRIRPTVQEDGGDI F+ ++ GV
Sbjct: 151 DFFASGLPVLHDAQPNADTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGYEAGV 210

Query: 155 VKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
           VKLKMQGSC+SCPSS+VTLKNGVQNMLQFYIPE
Sbjct: 211 VKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPE 243

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila yakuba (taxid: 7245)

>sp|B4IMF6|NFU1_DROSE NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila sechellia GN=GM13534 PE=3 SV=1

 Score =  246 bits (629), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 116/153 (75%), Positives = 132/153 (86%), Gaps = 1/153 (0%)

Query: 35  GQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIM 94
           G T DFP G  A+ SPL KLLFR+EGVK VFFG DFIT++KQ+   +W L+KPE+FA IM
Sbjct: 92  GNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFFGADFITISKQEG-AEWSLIKPEVFAVIM 150

Query: 95  DFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGV 154
           DFF+SGLPVL DAQP++DT I EDDDETV MIKELLDTRIRPTVQEDGGDI F+ ++ GV
Sbjct: 151 DFFASGLPVLNDAQPNADTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGYEAGV 210

Query: 155 VKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
           VKLKMQGSC+SCPSS+VTLKNGVQNMLQFYIPE
Sbjct: 211 VKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPE 243

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila sechellia (taxid: 7238)

>sp|B4R3T1|NFU1_DROSI NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila simulans GN=GD15490 PE=3 SV=1

 Score =  246 bits (627), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 116/153 (75%), Positives = 132/153 (86%), Gaps = 1/153 (0%)

Query: 35  GQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIM 94
           G T DFP G  A+ SPL KLLFR+EGVK VFFG DFIT++KQ+   +W L+KPE+FA IM
Sbjct: 92  GNTYDFPHGTTAHSSPLAKLLFRVEGVKGVFFGADFITISKQEG-AEWSLIKPEVFAVIM 150

Query: 95  DFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGV 154
           DFF+SGLPVL DAQP++DT I EDDDETV MIKELLDTRIRPTVQEDGGDI F+ ++ GV
Sbjct: 151 DFFASGLPVLNDAQPNADTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGYEAGV 210

Query: 155 VKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
           VKLKMQGSC+SCPSS+VTLKNGVQNMLQFYIPE
Sbjct: 211 VKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPE 243

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila simulans (taxid: 7240)

>sp|B3NYF7|NFU1_DROER NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila erecta GN=GG17526 PE=3 SV=1

 Score =  246 bits (627), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 115/153 (75%), Positives = 132/153 (86%), Gaps = 1/153 (0%)

Query: 35  GQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIM 94
           G T DFP G  A+ SPL KLLFR+EGVK VFFG DF+T++KQ+   +W L+KPE+FA IM
Sbjct: 92  GNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFFGADFVTISKQEG-AEWSLIKPEVFAVIM 150

Query: 95  DFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGV 154
           DFF+SGLPVL DAQP++DT I EDDDETV MIKELLDTRIRPTVQEDGGDI F+ ++ GV
Sbjct: 151 DFFASGLPVLHDAQPNADTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGYEAGV 210

Query: 155 VKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
           VKLKMQGSC+SCPSS+VTLKNGVQNMLQFYIPE
Sbjct: 211 VKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPE 243

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila erecta (taxid: 7220)

>sp|B4NE93|NFU1_DROWI NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila willistoni GN=GK25604 PE=3 SV=1

 Score =  243 bits (621), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 113/153 (73%), Positives = 134/153 (87%), Gaps = 1/153 (0%)

Query: 35  GQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIM 94
           G T DFP+  AA+CSPL KLLFR+EGV+SVFFG DFIT++K++   +W L+KPE+FA IM
Sbjct: 93  GNTYDFPSVAAAHCSPLAKLLFRVEGVRSVFFGSDFITISKEEA-AEWGLIKPEVFAVIM 151

Query: 95  DFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGV 154
           DFF+SGLP+L +A+ ++DT I EDDDETV MIKELLDTRIRPTVQEDGGDI F+S+  GV
Sbjct: 152 DFFASGLPILHEARNNADTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMSYDNGV 211

Query: 155 VKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
           VKLKMQGSC+SCPSS+VTLKNGVQNMLQFYIPE
Sbjct: 212 VKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPE 244

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila willistoni (taxid: 7260)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
91089707	244	PREDICTED: similar to AGAP000598-PA [Tri	0.805	0.643	0.810	1e-69
345486124	278	PREDICTED: NFU1 iron-sulfur cluster scaf	0.784	0.550	0.816	2e-69
239799267	254	ACYPI005854 [Acyrthosiphon pisum]	0.841	0.645	0.757	4e-69
193599106	254	PREDICTED: NFU1 iron-sulfur cluster scaf	0.841	0.645	0.751	3e-68
340712507	275	PREDICTED: NFU1 iron-sulfur cluster scaf	0.794	0.563	0.780	1e-67
350399846	275	PREDICTED: NFU1 iron-sulfur cluster scaf	0.794	0.563	0.780	2e-67
66543732	275	PREDICTED: NFU1 iron-sulfur cluster scaf	0.841	0.596	0.757	5e-67
380016958	275	PREDICTED: NFU1 iron-sulfur cluster scaf	0.794	0.563	0.774	1e-66
157167461	263	hypothetical protein AaeL_AAEL002148 [Ae	0.912	0.676	0.652	5e-66
225711062	237	NFU1 iron-sulfur cluster scaffold homolo	0.810	0.666	0.75	7e-66

>gi|91089707|ref|XP_974909.1| PREDICTED: similar to AGAP000598-PA [Tribolium castaneum] gi|270011317|gb|EFA07765.1| hypothetical protein TcasGA2_TC005319 [Tribolium castaneum]

 Score =  267 bits (683), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 128/158 (81%), Positives = 144/158 (91%), Gaps = 1/158 (0%)

Query: 30  VLEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEI 89
           VLEE GQTIDFP GQAAYCSPLGKLLFRIEGVKSVF G +FITVTK DD+++WK++KPEI
Sbjct: 70  VLEE-GQTIDFPNGQAAYCSPLGKLLFRIEGVKSVFLGPEFITVTKTDDEIEWKIIKPEI 128

Query: 90  FATIMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFIS 149
           FATIMDFF+SGLPVL DA P++DT I+EDD E VQMIKELLDTRIRPTVQEDGGDI F+ 
Sbjct: 129 FATIMDFFASGLPVLNDATPNADTQINEDDSEIVQMIKELLDTRIRPTVQEDGGDIIFMG 188

Query: 150 FQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
           +  G+VKLK+QG+CTSCPSS+VTLKNGVQNMLQFYIPE
Sbjct: 189 YDDGIVKLKLQGACTSCPSSIVTLKNGVQNMLQFYIPE 226

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345486124|ref|XP_003425407.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like [Nasonia vitripennis]

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 125/153 (81%), Positives = 140/153 (91%)

Query: 35  GQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIM 94
           GQT DFP+   A+CSPL K+LFRIEGVKSVFFG DFIT+TK D+DV+WKL+KPEIFATIM
Sbjct: 92  GQTKDFPSATDAFCSPLAKMLFRIEGVKSVFFGSDFITITKIDEDVEWKLIKPEIFATIM 151

Query: 95  DFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGV 154
           DFF+SGLP+ T+AQ SSDTVI+EDDDE VQMIKELLDTRIRPTVQEDGGDI F+ F+ G+
Sbjct: 152 DFFASGLPIFTEAQSSSDTVINEDDDEIVQMIKELLDTRIRPTVQEDGGDIVFMGFENGI 211

Query: 155 VKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
           VKLKMQGSCTSCPSSVVTLKNGVQNM+QFYIPE
Sbjct: 212 VKLKMQGSCTSCPSSVVTLKNGVQNMMQFYIPE 244

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239799267|dbj|BAH70563.1| ACYPI005854 [Acyrthosiphon pisum]

 Score =  266 bits (679), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 125/165 (75%), Positives = 144/165 (87%), Gaps = 1/165 (0%)

Query: 24  ISFQDGV-LEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDW 82
           + F  GV + E G T+DFP   AAYCSPL K+LFRIEGVKSVFFG D+IT+TK DDD++W
Sbjct: 56  VKFLPGVQVLEKGHTMDFPNATAAYCSPLAKVLFRIEGVKSVFFGSDYITLTKTDDDIEW 115

Query: 83  KLLKPEIFATIMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDG 142
            +LKPEI+ATIMDFF+SGLP+LTDA+P+SDT IHEDD+ETV MIKELLD+RIRPTVQEDG
Sbjct: 116 MVLKPEIYATIMDFFASGLPILTDAKPTSDTQIHEDDNETVMMIKELLDSRIRPTVQEDG 175

Query: 143 GDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
           GDI FI +  G+VKLK+QGSCTSCPSSVVTLK GVQNMLQFYIPE
Sbjct: 176 GDILFIGYDAGIVKLKLQGSCTSCPSSVVTLKGGVQNMLQFYIPE 220

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193599106|ref|XP_001949519.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like [Acyrthosiphon pisum]

 Score =  263 bits (672), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 124/165 (75%), Positives = 143/165 (86%), Gaps = 1/165 (0%)

Query: 24  ISFQDGV-LEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDW 82
           + F  GV + E G T+DFP   AAYCSPL K+LFRIEGVKSVFFG D+IT+TK DDD++W
Sbjct: 56  VKFLPGVQVLEKGHTMDFPNATAAYCSPLAKVLFRIEGVKSVFFGSDYITLTKTDDDIEW 115

Query: 83  KLLKPEIFATIMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDG 142
            +LKPEI+ATIMDFF+SGLP+LTDA+P+SDT IHEDD+ETV MIKELLD+RIRPTVQEDG
Sbjct: 116 MVLKPEIYATIMDFFASGLPILTDAKPTSDTQIHEDDNETVMMIKELLDSRIRPTVQEDG 175

Query: 143 GDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
           GDI FI +  G+VKLK+QGSCTSCPSSVVTLK GVQ MLQFYIPE
Sbjct: 176 GDILFIGYDAGIVKLKLQGSCTSCPSSVVTLKGGVQYMLQFYIPE 220

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712507|ref|XP_003394800.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like [Bombus terrestris]

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/155 (78%), Positives = 137/155 (88%)

Query: 33  EPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFAT 92
           E GQT DFP    AYCSPL K+LFRI+GVKSVFFG DFIT++K D+DV+WKLLKPEIFA 
Sbjct: 87  ETGQTKDFPNATDAYCSPLAKMLFRIDGVKSVFFGPDFITISKADEDVEWKLLKPEIFAV 146

Query: 93  IMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQG 152
           IMDFF++GLP+LTD QP++DT I EDD E VQMIKELLDTRIRPTVQEDGGDI F+ F+ 
Sbjct: 147 IMDFFATGLPILTDEQPATDTQISEDDSEIVQMIKELLDTRIRPTVQEDGGDIVFMGFEE 206

Query: 153 GVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
           G+VKLKMQGSCTSCPSSV+TLKNGVQNM+QFYIPE
Sbjct: 207 GIVKLKMQGSCTSCPSSVITLKNGVQNMMQFYIPE 241

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399846|ref|XP_003485658.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like [Bombus impatiens]

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 121/155 (78%), Positives = 137/155 (88%)

Query: 33  EPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFAT 92
           E GQT DFP    AYCSPL K+LFRI+GVKSVFFG DFIT++K D+DV+WKLLKPEIFA 
Sbjct: 87  ETGQTKDFPNATDAYCSPLAKMLFRIDGVKSVFFGPDFITISKADEDVEWKLLKPEIFAV 146

Query: 93  IMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQG 152
           IMDFF++GLP+LTD QP++DT I EDD E VQMIKELLDTRIRPTVQEDGGDI F+ F+ 
Sbjct: 147 IMDFFATGLPILTDEQPATDTQISEDDSEIVQMIKELLDTRIRPTVQEDGGDIVFMGFEE 206

Query: 153 GVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
           G+VKLKMQGSCTSCPSSV+TLKNGVQNM+QFYIPE
Sbjct: 207 GIVKLKMQGSCTSCPSSVITLKNGVQNMMQFYIPE 241

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66543732|ref|XP_395826.2| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like [Apis mellifera]

 Score =  259 bits (661), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 125/165 (75%), Positives = 141/165 (85%), Gaps = 1/165 (0%)

Query: 24  ISFQDGV-LEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDW 82
           + F  GV + E GQT DFP     YCSPL K+LFRI+GVKSVFFG DFIT+TK D+DV+W
Sbjct: 77  LKFLPGVKILEQGQTKDFPNAIDGYCSPLAKMLFRIDGVKSVFFGPDFITITKADEDVEW 136

Query: 83  KLLKPEIFATIMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDG 142
           KLLKPEIFA IMDFF+SGLPVLTD QP++DT I +DD E VQMIKELLDTRIRPTVQEDG
Sbjct: 137 KLLKPEIFAVIMDFFASGLPVLTDEQPAADTQISDDDSEIVQMIKELLDTRIRPTVQEDG 196

Query: 143 GDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
           GDI F+ F+ G+VKLKMQGSCTSCPSSV+TLKNGVQNM+QFYIPE
Sbjct: 197 GDIVFMGFEEGIVKLKMQGSCTSCPSSVITLKNGVQNMMQFYIPE 241

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016958|ref|XP_003692434.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like [Apis florea]

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 120/155 (77%), Positives = 136/155 (87%)

Query: 33  EPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFAT 92
           E GQT DFP     YCSPL K+LFRI+GVKSVFFG DFIT+TK D+DV+WKLLKPEIFA 
Sbjct: 87  EQGQTKDFPNAIDGYCSPLAKMLFRIDGVKSVFFGPDFITITKADEDVEWKLLKPEIFAV 146

Query: 93  IMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQG 152
           IMDFF+SGLP+LTD +P++DT I +DD E VQMIKELLDTRIRPTVQEDGGDI F+ F+ 
Sbjct: 147 IMDFFASGLPILTDEEPAADTQISDDDSEIVQMIKELLDTRIRPTVQEDGGDIVFMGFEE 206

Query: 153 GVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
           G+VKLKMQGSCTSCPSSV+TLKNGVQNM+QFYIPE
Sbjct: 207 GIVKLKMQGSCTSCPSSVITLKNGVQNMMQFYIPE 241

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157167461|ref|XP_001654807.1| hypothetical protein AaeL_AAEL002148 [Aedes aegypti] gi|108882432|gb|EAT46657.1| AAEL002148-PA [Aedes aegypti]

 Score =  255 bits (652), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 126/193 (65%), Positives = 151/193 (78%), Gaps = 15/193 (7%)

Query: 8   TRIRPTVQEDGGDIQFISFQD-------------GVLEEPGQTIDFPTGQAAYCSPLGKL 54
           T   P +  +     FI  QD              VLE+ GQT+DFPT  AA CSPL KL
Sbjct: 41  TNTHPALASNHVRTMFIQTQDTPNPDSLKFLPGVAVLEK-GQTMDFPTQAAALCSPLAKL 99

Query: 55  LFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIMDFFSSGLPVLTDAQPSSDTV 114
           LFRIEGV+SVFFG DF+T++K ++  +W+L+KPE+FA IMDFF+SGLPV+TDA+P  DT 
Sbjct: 100 LFRIEGVRSVFFGADFVTISKHEE-AEWRLIKPEVFAVIMDFFASGLPVVTDAKPMGDTQ 158

Query: 115 IHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLK 174
           I+EDDDETVQMIKELLD++IRPTVQEDGGDI F++F+ GVVKLKMQGSC+SCPSS+VTLK
Sbjct: 159 INEDDDETVQMIKELLDSKIRPTVQEDGGDIIFMAFEDGVVKLKMQGSCSSCPSSIVTLK 218

Query: 175 NGVQNMLQFYIPE 187
           NGVQNMLQFYIPE
Sbjct: 219 NGVQNMLQFYIPE 231

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225711062|gb|ACO11377.1| NFU1 iron-sulfur cluster scaffold homolog [Caligus rogercresseyi]

 Score =  255 bits (651), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 120/160 (75%), Positives = 143/160 (89%), Gaps = 2/160 (1%)

Query: 30  VLEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDD-DVDWKLLKPE 88
           VLE  G T+DFPT  AAYCSPL KLLFR++GVK VFFG DFIT+TK++D +V+WK++KPE
Sbjct: 48  VLETAGSTLDFPTPSAAYCSPLAKLLFRVDGVKGVFFGQDFITITKEEDSEVEWKVIKPE 107

Query: 89  IFATIMDFFSSGLPVLT-DAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQF 147
           ++AT+MDFF+SGLP++  DA+P SDT IHEDDD+TV MIKELLD+RIRPTVQEDGGDI F
Sbjct: 108 VYATLMDFFASGLPIVNEDAKPHSDTEIHEDDDDTVAMIKELLDSRIRPTVQEDGGDIIF 167

Query: 148 ISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
           + F+ G+VKLKMQGSCTSCPSS+VTLKNGVQNMLQFYIPE
Sbjct: 168 MGFEDGIVKLKMQGSCTSCPSSIVTLKNGVQNMLQFYIPE 207

Source: Caligus rogercresseyi

Species: Caligus rogercresseyi

Genus: Caligus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
UNIPROTKB|B4H303	282	GL13432 "NFU1 iron-sulfur clus	0.835	0.578	0.709	5.5e-61
UNIPROTKB|B5DKJ8	286	GA22888 "NFU1 iron-sulfur clus	0.835	0.569	0.709	5.5e-61
FB|FBgn0052500	283	CG32500 [Drosophila melanogast	0.876	0.604	0.693	5.5e-61
FB|FBgn0052857	283	CG32857 [Drosophila melanogast	0.876	0.604	0.693	5.5e-61
FB|FBgn0053502	283	CG33502 [Drosophila melanogast	0.876	0.604	0.693	5.5e-61
UNIPROTKB|B4IMF6	283	GM13534 "NFU1 iron-sulfur clus	0.876	0.604	0.693	1.2e-60
UNIPROTKB|B4R3T1	283	GD15490 "NFU1 iron-sulfur clus	0.876	0.604	0.693	1.9e-60
UNIPROTKB|B4JWR9	298	GH17809 "NFU1 iron-sulfur clus	0.835	0.546	0.709	3.1e-60
UNIPROTKB|B4M375	298	GJ19011 "NFU1 iron-sulfur clus	0.876	0.573	0.670	3.1e-60
UNIPROTKB|B3NYF7	283	GG17526 "NFU1 iron-sulfur clus	0.835	0.575	0.715	3.9e-60

UNIPROTKB|B4H303 GL13432 "NFU1 iron-sulfur cluster scaffold homolog, mitochondrial" [Drosophila persimilis (taxid:7234)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 117/165 (70%), Positives = 142/165 (86%)

Query:    24 ISFQDGV-LEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDW 82
             + F  GV +   G T DFP+G AA+CSPL KLLFR+EGV++VFFG DFIT++K++   +W
Sbjct:    76 LKFLPGVEVLGKGNTYDFPSGTAAHCSPLAKLLFRVEGVRAVFFGSDFITISKEES-AEW 134

Query:    83 KLLKPEIFATIMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDG 142
              L+KPE+FA IMDFF+SGLP+L +A+P++DT I +DDDETV MIKELLDTRIRPTVQEDG
Sbjct:   135 SLIKPEVFAVIMDFFASGLPILHEARPNADTEILDDDDETVMMIKELLDTRIRPTVQEDG 194

Query:   143 GDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
             GDI FIS++ GVVKLKMQGSC+SCPSS+VTLKNGVQNMLQFYIPE
Sbjct:   195 GDIVFISYENGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPE 239

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|B5DKJ8 GA22888 "NFU1 iron-sulfur cluster scaffold homolog, mitochondrial" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 117/165 (70%), Positives = 142/165 (86%)

Query:    24 ISFQDGV-LEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDW 82
             + F  GV +   G T DFP+G AA+CSPL KLLFR+EGV++VFFG DFIT++K++   +W
Sbjct:    80 LKFLPGVEVLGKGNTYDFPSGTAAHCSPLAKLLFRVEGVRAVFFGSDFITISKEES-AEW 138

Query:    83 KLLKPEIFATIMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDG 142
              L+KPE+FA IMDFF+SGLP+L +A+P++DT I +DDDETV MIKELLDTRIRPTVQEDG
Sbjct:   139 SLIKPEVFAVIMDFFASGLPILHEARPNADTEILDDDDETVMMIKELLDTRIRPTVQEDG 198

Query:   143 GDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
             GDI FIS++ GVVKLKMQGSC+SCPSS+VTLKNGVQNMLQFYIPE
Sbjct:   199 GDIVFISYENGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPE 243

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0052500 CG32500 [Drosophila melanogaster (taxid:7227)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 120/173 (69%), Positives = 142/173 (82%)

Query:    16 EDGGDIQFISFQDGV-LEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVT 74
             +D  + + + F  GV +   G T DFP G  A+ SPL KLLFR+EGVK VFFG DF+T++
Sbjct:    72 QDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHNSPLAKLLFRVEGVKGVFFGADFVTIS 131

Query:    75 KQDDDVDWKLLKPEIFATIMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRI 134
             KQ+   +W L+KPE+FA IMDFF+SGLPVL DAQP++DT I EDDDETV MIKELLDTRI
Sbjct:   132 KQEG-AEWSLIKPEVFAVIMDFFASGLPVLNDAQPNADTEILEDDDETVMMIKELLDTRI 190

Query:   135 RPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
             RPTVQEDGGDI F+ ++GGVVKLKMQGSC+SCPSS+VTLKNGVQNMLQFYIPE
Sbjct:   191 RPTVQEDGGDIVFMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPE 243

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

FB|FBgn0052857 CG32857 [Drosophila melanogaster (taxid:7227)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 120/173 (69%), Positives = 142/173 (82%)

Query:    16 EDGGDIQFISFQDGV-LEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVT 74
             +D  + + + F  GV +   G T DFP G  A+ SPL KLLFR+EGVK VFFG DF+T++
Sbjct:    72 QDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHNSPLAKLLFRVEGVKGVFFGADFVTIS 131

Query:    75 KQDDDVDWKLLKPEIFATIMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRI 134
             KQ+   +W L+KPE+FA IMDFF+SGLPVL DAQP++DT I EDDDETV MIKELLDTRI
Sbjct:   132 KQEG-AEWSLIKPEVFAVIMDFFASGLPVLNDAQPNADTEILEDDDETVMMIKELLDTRI 190

Query:   135 RPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
             RPTVQEDGGDI F+ ++GGVVKLKMQGSC+SCPSS+VTLKNGVQNMLQFYIPE
Sbjct:   191 RPTVQEDGGDIVFMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPE 243

GO:0008026 "ATP-dependent helicase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

FB|FBgn0053502 CG33502 [Drosophila melanogaster (taxid:7227)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 120/173 (69%), Positives = 142/173 (82%)

Query:    16 EDGGDIQFISFQDGV-LEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVT 74
             +D  + + + F  GV +   G T DFP G  A+ SPL KLLFR+EGVK VFFG DF+T++
Sbjct:    72 QDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHNSPLAKLLFRVEGVKGVFFGADFVTIS 131

Query:    75 KQDDDVDWKLLKPEIFATIMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRI 134
             KQ+   +W L+KPE+FA IMDFF+SGLPVL DAQP++DT I EDDDETV MIKELLDTRI
Sbjct:   132 KQEG-AEWSLIKPEVFAVIMDFFASGLPVLNDAQPNADTEILEDDDETVMMIKELLDTRI 190

Query:   135 RPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
             RPTVQEDGGDI F+ ++GGVVKLKMQGSC+SCPSS+VTLKNGVQNMLQFYIPE
Sbjct:   191 RPTVQEDGGDIVFMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPE 243

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

UNIPROTKB|B4IMF6 GM13534 "NFU1 iron-sulfur cluster scaffold homolog, mitochondrial" [Drosophila sechellia (taxid:7238)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 120/173 (69%), Positives = 141/173 (81%)

Query:    16 EDGGDIQFISFQDGV-LEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVT 74
             +D  + + + F  GV +   G T DFP G  A+ SPL KLLFR+EGVK VFFG DFIT++
Sbjct:    72 QDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFFGADFITIS 131

Query:    75 KQDDDVDWKLLKPEIFATIMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRI 134
             KQ+   +W L+KPE+FA IMDFF+SGLPVL DAQP++DT I EDDDETV MIKELLDTRI
Sbjct:   132 KQEG-AEWSLIKPEVFAVIMDFFASGLPVLNDAQPNADTEILEDDDETVMMIKELLDTRI 190

Query:   135 RPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
             RPTVQEDGGDI F+ ++ GVVKLKMQGSC+SCPSS+VTLKNGVQNMLQFYIPE
Sbjct:   191 RPTVQEDGGDIVFMGYEAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPE 243

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|B4R3T1 GD15490 "NFU1 iron-sulfur cluster scaffold homolog, mitochondrial" [Drosophila simulans (taxid:7240)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 120/173 (69%), Positives = 141/173 (81%)

Query:    16 EDGGDIQFISFQDGV-LEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVT 74
             +D  + + + F  GV +   G T DFP G  A+ SPL KLLFR+EGVK VFFG DFIT++
Sbjct:    72 QDTPNPESLKFLPGVDVLGKGNTYDFPHGTTAHSSPLAKLLFRVEGVKGVFFGADFITIS 131

Query:    75 KQDDDVDWKLLKPEIFATIMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRI 134
             KQ+   +W L+KPE+FA IMDFF+SGLPVL DAQP++DT I EDDDETV MIKELLDTRI
Sbjct:   132 KQEG-AEWSLIKPEVFAVIMDFFASGLPVLNDAQPNADTEILEDDDETVMMIKELLDTRI 190

Query:   135 RPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
             RPTVQEDGGDI F+ ++ GVVKLKMQGSC+SCPSS+VTLKNGVQNMLQFYIPE
Sbjct:   191 RPTVQEDGGDIVFMGYEAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPE 243

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|B4JWR9 GH17809 "NFU1 iron-sulfur cluster scaffold homolog, mitochondrial" [Drosophila grimshawi (taxid:7222)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 117/165 (70%), Positives = 142/165 (86%)

Query:    24 ISFQDGV-LEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDW 82
             + F  GV +   G T DFP+  AA+CSPL KLLFR+EGV++VFFG DFIT++K+++  +W
Sbjct:    92 LKFLPGVEVLGKGNTYDFPSATAAHCSPLAKLLFRVEGVRAVFFGSDFITISKEENG-EW 150

Query:    83 KLLKPEIFATIMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDG 142
              L+KPE+FA IMDFF+SGLP+L +A+P++DT I EDDDETV MIKELLDTRIRPTVQEDG
Sbjct:   151 GLIKPEVFAVIMDFFASGLPILHEARPNADTEILEDDDETVMMIKELLDTRIRPTVQEDG 210

Query:   143 GDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
             GDI FIS++ GVVKLKMQGSC+SCPSS+VTLKNGVQNMLQFYIPE
Sbjct:   211 GDIVFISYEKGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPE 255

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|B4M375 GJ19011 "NFU1 iron-sulfur cluster scaffold homolog, mitochondrial" [Drosophila virilis (taxid:7244)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 116/173 (67%), Positives = 145/173 (83%)

Query:    16 EDGGDIQFISFQDGV-LEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVT 74
             +D  + + + F  GV +   G T DFP+G AA+CSPL KLLFR+EGV++VFFG DFIT++
Sbjct:    80 QDTPNPESLKFLPGVDVLGKGNTYDFPSGSAAHCSPLAKLLFRVEGVRAVFFGGDFITIS 139

Query:    75 KQDDDVDWKLLKPEIFATIMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRI 134
             K++   +W L+KPE+FA IMDFF+SGLPV+ +A+P++DT I EDDDETV MIKELLDTRI
Sbjct:   140 KEESG-EWGLIKPEVFAVIMDFFASGLPVIHEARPNADTEILEDDDETVMMIKELLDTRI 198

Query:   135 RPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
             RPTVQEDGGDI F+ ++ G+VKLKMQGSC+SCPSS+VTLKNGVQNMLQFYIPE
Sbjct:   199 RPTVQEDGGDIVFMGYENGIVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPE 251

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|B3NYF7 GG17526 "NFU1 iron-sulfur cluster scaffold homolog, mitochondrial" [Drosophila erecta (taxid:7220)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 118/165 (71%), Positives = 137/165 (83%)

Query:    24 ISFQDGV-LEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDW 82
             + F  GV +   G T DFP G  A+ SPL KLLFR+EGVK VFFG DF+T++KQ+   +W
Sbjct:    80 LKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFFGADFVTISKQEG-AEW 138

Query:    83 KLLKPEIFATIMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDG 142
              L+KPE+FA IMDFF+SGLPVL DAQP++DT I EDDDETV MIKELLDTRIRPTVQEDG
Sbjct:   139 SLIKPEVFAVIMDFFASGLPVLHDAQPNADTEILEDDDETVMMIKELLDTRIRPTVQEDG 198

Query:   143 GDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
             GDI F+ ++ GVVKLKMQGSC+SCPSS+VTLKNGVQNMLQFYIPE
Sbjct:   199 GDIVFMGYEAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPE 243

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C8J2	NIFU5_ARATH	No assigned EC number	0.5870	0.7692	0.5454	yes	N/A
Q9QZ23	NFU1_MOUSE	No assigned EC number	0.6797	0.7794	0.5960	yes	N/A
Q9UMS0	NFU1_HUMAN	No assigned EC number	0.6973	0.7743	0.5944	yes	N/A
Q8SY96	NFU1_DROME	No assigned EC number	0.7581	0.7794	0.5371	yes	N/A
Q9UUB8	YH9J_SCHPO	No assigned EC number	0.5096	0.7692	0.5769	yes	N/A
B5DKJ8	NFU1_DROPS	No assigned EC number	0.7450	0.7794	0.5314	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	195
pfam08712	87	pfam08712, Nfu_N, Scaffold protein Nfu/NifU N term	2e-29
smart00932	88	smart00932, Nfu_N, Scaffold protein Nfu/NifU N ter	2e-26
COG0694	93	COG0694, COG0694, Thioredoxin-like proteins and do	9e-24
pfam01106	68	pfam01106, NifU, NifU-like domain	2e-22
TIGR02000	290	TIGR02000, NifU_proper, Fe-S cluster assembly prot	4e-09
COG0694	93	COG0694, COG0694, Thioredoxin-like proteins and do	5e-04
TIGR03341	190	TIGR03341, YhgI_GntY, IscR-regulated protein YhgI	0.003
pfam01106	68	pfam01106, NifU, NifU-like domain	0.004

>gnl|CDD|204038 pfam08712, Nfu_N, Scaffold protein Nfu/NifU N terminal

 Score =  104 bits (261), Expect = 2e-29
 Identities = 37/67 (55%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 34  PGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATI 93
           P  T +F     A  SPL + LF+I GVKSVFFG DFITVTK  DD DW  LKPE+   I
Sbjct: 22  PEGTFEFKNADEAEASPLAQALFKIPGVKSVFFGDDFITVTK-ADDADWDDLKPEVLEAI 80

Query: 94  MDFFSSG 100
           M+   SG
Sbjct: 81  MEHLESG 87

This domain is found at the N terminus of NifU and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the the assembly of iron-sulphur clusters. Length = 87

>gnl|CDD|214919 smart00932, Nfu_N, Scaffold protein Nfu/NifU N terminal

 Score = 96.4 bits (241), Expect = 2e-26
 Identities = 39/68 (57%), Positives = 48/68 (70%), Gaps = 2/68 (2%)

Query: 34  PGQTIDFPT-GQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFAT 92
           PG + +F +  +AA  SPL + LF I GVKSVFFG DFITVTK   DVDW+ LKPE+ + 
Sbjct: 22  PGGSAEFKSADEAAEASPLAQKLFEIPGVKSVFFGPDFITVTK-YPDVDWEDLKPEVLSV 80

Query: 93  IMDFFSSG 100
           IM+ F SG
Sbjct: 81  IMEHFESG 88

This domain is found at the N terminus of NifU and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the the assembly of iron-sulphur clusters. Length = 88

>gnl|CDD|223766 COG0694, COG0694, Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]

 Score = 89.7 bits (223), Expect = 9e-24
 Identities = 33/73 (45%), Positives = 50/73 (68%), Gaps = 2/73 (2%)

Query: 117 EDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQG--GVVKLKMQGSCTSCPSSVVTLK 174
           E D E ++ ++E+LD +IRP +  DGGD++ +      GVV L++ G+C+ CPSS VTLK
Sbjct: 5   ETDAELLERVEEVLDEKIRPQLAMDGGDVELVGIDEEDGVVYLRLGGACSGCPSSTVTLK 64

Query: 175 NGVQNMLQFYIPE 187
           NG++  L+  IPE
Sbjct: 65  NGIERQLKEEIPE 77

Length = 93

>gnl|CDD|144628 pfam01106, NifU, NifU-like domain

 Score = 85.4 bits (212), Expect = 2e-22
 Identities = 27/62 (43%), Positives = 43/62 (69%), Gaps = 1/62 (1%)

Query: 126 IKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYI 185
           I+E++D  IRP +Q DGGDI+ +   G +VK+++QG+C  C SS +TLK G++  L+  +
Sbjct: 1   IEEVIDE-IRPMLQRDGGDIELVDVDGDIVKVRLQGACGGCMSSTMTLKGGIERKLRERL 59

Query: 186 PE 187
            E
Sbjct: 60  GE 61

This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown. Length = 68

>gnl|CDD|233679 TIGR02000, NifU_proper, Fe-S cluster assembly protein NifU

 Score = 54.5 bits (131), Expect = 4e-09
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 123 VQMIKELLDT--RIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNM 180
           VQ I+ +      +RP +Q DGGD++     G +V + + G+C+ C  S +TLK G+Q  
Sbjct: 218 VQRIQLIQKVLEEVRPVLQADGGDVELYDVDGKIVYVVLTGACSGCSMSTMTLK-GIQQR 276

Query: 181 L 181
           L
Sbjct: 277 L 277

Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation]. Length = 290

>gnl|CDD|223766 COG0694, COG0694, Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)

Query: 2  IKELLDTRIRPTVQEDGGDIQFISFQ--DGV 30
          ++E+LD +IRP +  DGGD++ +     DGV
Sbjct: 14 VEEVLDEKIRPQLAMDGGDVELVGIDEEDGV 44

Length = 93

>gnl|CDD|132384 TIGR03341, YhgI_GntY, IscR-regulated protein YhgI

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 118 DDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQG-GVVKLKMQGSCTSCPSSVVTLKNG 176
           DD    + I  +L + I P +   GG +  +     GV  L+  G C  C    VTLK+G
Sbjct: 102 DDAPLEERINYVLQSEINPQLASHGGKVTLVEITDDGVAVLQFGGGCNGCSMVDVTLKDG 161

Query: 177 VQNMLQFYIPETT 189
           V+  L    PE  
Sbjct: 162 VEKTLLERFPELK 174

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 190

>gnl|CDD|144628 pfam01106, NifU, NifU-like domain

 Score = 34.1 bits (79), Expect = 0.004
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 2  IKELLDTRIRPTVQEDGGDIQFISFQDGV 30
          I+E++D  IRP +Q DGGDI+ +     +
Sbjct: 1  IEEVIDE-IRPMLQRDGGDIELVDVDGDI 28

This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown. Length = 68

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
KOG2358|consensus	213		100.0
COG0694	93	Thioredoxin-like proteins and domains [Posttransla	99.95
PF01106	68	NifU: NifU-like domain; InterPro: IPR001075 Iron-s	99.93
TIGR03341	190	YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR0	99.92
PRK11190	192	Fe/S biogenesis protein NfuA; Provisional	99.91
TIGR02000	290	NifU_proper Fe-S cluster assembly protein NifU. Th	99.83
PF08712	87	Nfu_N: Scaffold protein Nfu/NifU N terminal; Inter	99.79
COG0694	93	Thioredoxin-like proteins and domains [Posttransla	99.03
PF01106	68	NifU: NifU-like domain; InterPro: IPR001075 Iron-s	99.02
TIGR03341	190	YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR0	98.84
PRK11190	192	Fe/S biogenesis protein NfuA; Provisional	98.82
KOG2358|consensus	213		98.58
TIGR02000	290	NifU_proper Fe-S cluster assembly protein NifU. Th	98.47
PF01883	72	DUF59: Domain of unknown function DUF59; InterPro:	97.57
COG2151	111	PaaD Predicted metal-sulfur cluster biosynthetic e	96.83
TIGR02945	99	SUF_assoc FeS assembly SUF system protein. Members	95.32
TIGR03406	174	FeS_long_SufT probable FeS assembly SUF system pro	95.09
PRK11670	369	antiporter inner membrane protein; Provisional	85.37
TIGR02159	146	PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subu	84.78
PF02061	45	Lambda_CIII: Lambda Phage CIII; InterPro: IPR01305	81.32

>KOG2358|consensus

Probab=100.00  E-value=2e-33  Score=228.05  Aligned_cols=176  Identities=43%  Similarity=0.689  Sum_probs=152.2

Q ss_pred             CCceEEEEecC-----------CcccCC-CccccCCCcccccCChHHhhhccc-CCeeEEEeecceEEEEecCCCCCccc
Q psy1153          18 GGDIQFISFQD-----------GVLEEP-GQTIDFPTGQAAYCSPLGKLLFRI-EGVKSVFFGHDFITVTKQDDDVDWKL   84 (195)
Q Consensus        18 ~g~~~fi~~e~-----------~~~vl~-gg~~~f~~~~~a~~~~La~~Lf~i-~gV~~V~~~~dfVtVtk~~~~~~W~~   84 (195)
                      ..| |||++..           +..+++ -+...|++.-.+..+||+..+|.+ ++|+++|+++|||||+|..++..|.-
T Consensus         7 a~r-~~i~t~~tPn~~Sl~f~p~~~i~~~~~~~~~~~~~s~~~s~La~s~~~~~~gvv~~~~g~dfvtv~k~~ee~~w~~   85 (213)
T KOG2358|consen    7 AAR-MFIQTQITPNPSSLLFLPGKQILSERGLGDFATPCSAFFSPLAKSILFRDGGVVKVFFGPDFVTVTKLTEENVWSV   85 (213)
T ss_pred             hhh-hcccccCCCCcccccccCCCcccccccccccccccchhhcHHHHHHHhhcCCcEEEEecCCeEEEeccchhhhHhh
Confidence            445 8888754           555553 456778887778899999999965 49999999999999999974599999


Q ss_pred             hhHHHHHHHHHhhhcCCCcccCCCCCCC-CCCCCCchHHHHHHHHHHHhcCchhhhccCCcEEEEEEeC--CEEEEEEcc
Q psy1153          85 LKPEIFATIMDFFSSGLPVLTDAQPSSD-TVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQG--GVVKLKMQG  161 (195)
Q Consensus        85 l~~~i~~~I~d~l~s~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~~irP~l~~dGG~ie~v~~~~--g~v~v~l~G  161 (195)
                      |+|.+...++|+++.++|.+........ ....+++++....|+++|+++|||.|+.|||+++++++++  |.|+++|+|
T Consensus        86 L~p~i~~~~sd~g~~g~pli~g~~~~~~~~~~~e~d~e~t~~ikelietRiRp~i~edggdi~y~g~e~g~g~v~lklqg  165 (213)
T KOG2358|consen   86 LDPEIPSLMSDGGNVGLPLIDGNIVVLKLQGACESDPESTMTIKELIETRIRPKIQEDGGDEDYVGFETGLGLVSLKLQG  165 (213)
T ss_pred             hchhhHHHHhccccccchhhccchhhhhhcccccCChhHHHHHHHHHHHhhhhhhhccCCceeeccccCccchHHHHHhh
Confidence            9999999999999999998876644211 1224678999999999999999999999999999999997  599999999


Q ss_pred             cCCCCcchHHHHHHHHHHHHHhhCCCccceeeC
Q psy1153         162 SCTSCPSSVVTLKNGVQNMLQFYIPETTPGLNM  194 (195)
Q Consensus       162 aC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~~~  194 (195)
                      +|.+||++..||++|||++|+.|+|+||.|+.+
T Consensus       166 act~cpss~vtlk~Gie~mL~~y~~eVK~v~qv  198 (213)
T KOG2358|consen  166 ACTECPSSLVTLKNGIENMLEIYVPEVKGVIQV  198 (213)
T ss_pred             hhccCCcccchhhhhHHHHHHhhcceeeEEEec
Confidence            999999999999999999999999999998753

>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=6.1e-28  Score=175.57  Aligned_cols=78  Identities=41%  Similarity=0.778  Sum_probs=74.8

Q ss_pred             CchHHHHHHHHHHHhcCchhhhccCCcEEEEEEe--CCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccceeeCC
Q psy1153         118 DDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQ--GGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGLNME  195 (195)
Q Consensus       118 ~~~~~~~~i~~~l~~~irP~l~~dGG~ie~v~~~--~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~~~~  195 (195)
                      .++++.++++++|+++|||+|++||||++|++|+  +|+|+|||+|||+|||||+.|||++||++|++++|++++|..++
T Consensus         6 ~~~~~~e~v~~~l~~~irP~l~~dGGdve~~~i~~~~g~V~l~l~GaC~gC~sS~~TLk~gIE~~L~~~i~ev~~V~~v~   85 (93)
T COG0694           6 TDAELLERVEEVLDEKIRPQLAMDGGDVELVGIDEEDGVVYLRLGGACSGCPSSTVTLKNGIERQLKEEIPEVKEVEQVT   85 (93)
T ss_pred             ccHHHHHHHHHHHHhccCcceeccCCeEEEEEEecCCCeEEEEeCCcCCCCcccHHHHHHHHHHHHHHhCCccceEEEcc
Confidence            4778999999999999999999999999999998  78999999999999999999999999999999999999998764

>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron

Probab=99.93  E-value=6.1e-26  Score=156.98  Aligned_cols=68  Identities=38%  Similarity=0.810  Sum_probs=64.6

Q ss_pred             HHHHHHhcCchhhhccCCcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccceeeC
Q psy1153         126 IKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGLNM  194 (195)
Q Consensus       126 i~~~l~~~irP~l~~dGG~ie~v~~~~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~~~  194 (195)
                      |+++|++ |||+|++||||++|+++++++|+|||+|+|+|||+|..||+++||++|++++|++++|..+
T Consensus         1 V~~~l~~-IrP~L~~dGGdv~lv~v~~~~V~V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~~~v~~V~~v   68 (68)
T PF01106_consen    1 VEEVLEE-IRPYLQSDGGDVELVDVDDGVVYVRLTGACSGCPSSDMTLKQGIEQALREAVPEVKRVVPV   68 (68)
T ss_dssp             HHHHHHH-CHHHHHHTTEEEEEEEEETTEEEEEEESSCCSSCCHHHHHHHHHHHHHHHHSTT-SEEEEC
T ss_pred             CHHHHHH-hChHHHhcCCcEEEEEecCCEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCCceEEEC
Confidence            6889996 9999999999999999999999999999999999999999999999999999999999864

These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.

>TIGR03341 YhgI_GntY IscR-regulated protein YhgI

Probab=99.92  E-value=2.7e-25  Score=181.76  Aligned_cols=108  Identities=24%  Similarity=0.407  Sum_probs=86.1

Q ss_pred             hhHHHHHHHHHhhhcCCCcccCCCCCCCCCCCCCchHHHHHHHHHHHhcCchhhhccCCcEEEEEEe-CCEEEEEEcccC
Q psy1153          85 LKPEIFATIMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQ-GGVVKLKMQGSC  163 (195)
Q Consensus        85 l~~~i~~~I~d~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~irP~l~~dGG~ie~v~~~-~g~v~v~l~GaC  163 (195)
                      |.-...++..+-++++..+-++++  + .....+++++.++|+++|+++|||+|++|||||+|++|+ +++|+|||+|+|
T Consensus        72 L~g~~IDyve~~~g~gF~f~NPna--~-~~~~~~~~~~~~~i~~~l~~~irP~l~~dGGdielv~v~~~~~v~v~l~GaC  148 (190)
T TIGR03341        72 LEDAVIDFVTDRMGGQLTLKAPNA--K-MPKVADDAPLEERINYVLQSEINPQLASHGGKVTLVEITDDGVAVLQFGGGC  148 (190)
T ss_pred             hCCCEEEEeecCCCceeEEeCCcc--C-CCcCccchHHHHHHHHHHHhccCHHHHhcCCceEEEEEcCCCEEEEEEeecC
Confidence            444444444444455543333332  1 123345778999999999999999999999999999997 579999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHhhCCCccceeeCC
Q psy1153         164 TSCPSSVVTLKNGVQNMLQFYIPETTPGLNME  195 (195)
Q Consensus       164 ~gCp~s~~tl~~~Ie~~l~~~~pev~~V~~~~  195 (195)
                      +|||||.+||+++||++||+++|++++|.++.
T Consensus       149 ~gC~~s~~Tl~~~ie~~l~~~~p~v~~V~~~~  180 (190)
T TIGR03341       149 NGCSMVDVTLKDGVEKTLLERFPELKGVRDAT  180 (190)
T ss_pred             CCCcchHHHHHHHHHHHHHHhCCCcceEEEec
Confidence            99999999999999999999999999998763

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.

>PRK11190 Fe/S biogenesis protein NfuA; Provisional

Probab=99.91  E-value=1.4e-24  Score=177.72  Aligned_cols=79  Identities=25%  Similarity=0.506  Sum_probs=74.4

Q ss_pred             CCCchHHHHHHHHHHHhcCchhhhccCCcEEEEEEe-CCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCC-Cccceee
Q psy1153         116 HEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQ-GGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIP-ETTPGLN  193 (195)
Q Consensus       116 ~~~~~~~~~~i~~~l~~~irP~l~~dGG~ie~v~~~-~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~p-ev~~V~~  193 (195)
                      ..+++++.++|+++|+++|||+|++|||||+|++|+ +|+|+|||+|||+|||||++||+++||++|++++| +|++|.+
T Consensus       101 ~~~~~~~~~~i~~~l~~~irP~l~~dGGdielv~v~~~~~v~v~l~GaC~gC~~s~~Tl~~~Ie~~l~~~~p~~i~~v~~  180 (192)
T PRK11190        101 VADDAPLMERVEYVLQSQINPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPGELKGVRD  180 (192)
T ss_pred             CcccHHHHHHHHHHHHhccChhHHhcCCcEEEEEEcCCCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCHhhceEEE
Confidence            345778999999999999999999999999999997 68999999999999999999999999999999999 9999987


Q ss_pred             C
Q psy1153         194 M  194 (195)
Q Consensus       194 ~  194 (195)
                      +
T Consensus       181 v  181 (192)
T PRK11190        181 L  181 (192)
T ss_pred             e
Confidence            6

>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU

Probab=99.83  E-value=1.2e-20  Score=163.26  Aligned_cols=74  Identities=30%  Similarity=0.592  Sum_probs=69.7

Q ss_pred             chHHHHHHHHHHHhcCchhhhccCCcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccceeeC
Q psy1153         119 DDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGLNM  194 (195)
Q Consensus       119 ~~~~~~~i~~~l~~~irP~l~~dGG~ie~v~~~~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~~~  194 (195)
                      ..+..++|+++| ++|||+|++|||||+|++|++++|+|||+|+|+|||+|.+||+. ||++|++++|++..|..+
T Consensus       217 ~~~~~~~v~~~l-~~irP~l~~dGGdv~lv~v~~~~v~v~l~GaC~gC~~s~~Tl~~-Ie~~l~~~~p~~~~V~~v  290 (290)
T TIGR02000       217 NVQRIQLIQKVL-EEVRPVLQADGGDVELYDVDGKIVYVVLTGACSGCSMSTMTLKG-IQQRLRERLGEFVVVEAV  290 (290)
T ss_pred             hHHHHHHHHHHH-HHhCchHhhcCCcEEEEEEeCCEEEEEEeeCCCCCcchHHHHHH-HHHHHHHhCCCceEEEeC
Confidence            456778999999 59999999999999999999999999999999999999999998 999999999999999864

Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.

>PF08712 Nfu_N: Scaffold protein Nfu/NifU N terminal; InterPro: IPR014824 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron

Probab=99.79  E-value=9.5e-20  Score=131.74  Aligned_cols=71  Identities=52%  Similarity=0.820  Sum_probs=55.4

Q ss_pred             CcccCCCccccCCCcccccCChHHhhhcccCCeeEEEeecceEEEEecCCCCCccchhHHHHHHHHHhhhcC
Q psy1153          29 GVLEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIMDFFSSG  100 (195)
Q Consensus        29 ~~~vl~gg~~~f~~~~~a~~~~La~~Lf~i~gV~~V~~~~dfVtVtk~~~~~~W~~l~~~i~~~I~d~l~s~  100 (195)
                      ++.++++++.+|.+..+|..+|||+.||+++||++||+++|||||||.+ +++|++|+++|+++|++||.+|
T Consensus        17 ~~~~~~~~s~~f~~~~~a~~spLA~~Lf~i~gV~~Vf~~~dfItVtK~~-~~~W~~l~~~I~~~I~~~l~sG   87 (87)
T PF08712_consen   17 DEPLLPGGSFEFKSAEEASDSPLAQALFAIPGVKSVFIGDDFITVTKNP-DADWEDLKPEIREVIMEFLESG   87 (87)
T ss_dssp             SS-SSTS---EEESSS-TTS-HHHHHHHTSTTEEEEEEETTEEEEEE-T-TS-HHHHHHHHHHHTH------
T ss_pred             CceeecCccEEeCChHHcccCHHHHHhcCCCCEeEEEEECCEEEEeeCC-CCCHHHHHHHHHHHHhhhccCC
Confidence            7889998899999999999999999999999999999999999999996 9999999999999999999876

These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This domain is found at the N terminus of NifU (from NIF system) and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the assembly of iron-sulphur clusters, functioning as scaffolds [, ]. ; GO: 0005506 iron ion binding; PDB: 2FFM_A 1PQX_A 2K1H_A.

>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=2e-10  Score=83.73  Aligned_cols=67  Identities=28%  Similarity=0.483  Sum_probs=59.9

Q ss_pred             HHHHHhhccCCccccCCCceEEEEecC--CcccCC--CccccCCCcccccCChHHhhhc-ccCCeeEEEeec
Q psy1153           2 IKELLDTRIRPTVQEDGGDIQFISFQD--GVLEEP--GQTIDFPTGQAAYCSPLGKLLF-RIEGVKSVFFGH   68 (195)
Q Consensus         2 ~~~~l~~~irp~~~~d~g~~~fi~~e~--~~~vl~--gg~~~f~~~~~a~~~~La~~Lf-~i~gV~~V~~~~   68 (195)
                      |+++|+++|||+|..||||+.|+.+++  |.+++.  |+|.+|+++..|.+..+.++|. .+|.|..|.-..
T Consensus        14 v~~~l~~~irP~l~~dGGdve~~~i~~~~g~V~l~l~GaC~gC~sS~~TLk~gIE~~L~~~i~ev~~V~~v~   85 (93)
T COG0694          14 VEEVLDEKIRPQLAMDGGDVELVGIDEEDGVVYLRLGGACSGCPSSTVTLKNGIERQLKEEIPEVKEVEQVT   85 (93)
T ss_pred             HHHHHHhccCcceeccCCeEEEEEEecCCCeEEEEeCCcCCCCcccHHHHHHHHHHHHHHhCCccceEEEcc
Confidence            678999999999999999999999984  677775  8999999999999999999999 589998887554

>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron

Probab=99.02  E-value=5.8e-11  Score=82.00  Aligned_cols=63  Identities=30%  Similarity=0.551  Sum_probs=57.1

Q ss_pred             HHHHHhhccCCccccCCCceEEEEecCCcccCC--CccccCCCcccccCChHHhhhc-ccCCeeEEE
Q psy1153           2 IKELLDTRIRPTVQEDGGDIQFISFQDGVLEEP--GQTIDFPTGQAAYCSPLGKLLF-RIEGVKSVF   65 (195)
Q Consensus         2 ~~~~l~~~irp~~~~d~g~~~fi~~e~~~~vl~--gg~~~f~~~~~a~~~~La~~Lf-~i~gV~~V~   65 (195)
                      |+++|+. |||+|+.|||+++|+.++++..++.  |+|.+|+++..+.+..+.++|. ++|.+..|.
T Consensus         1 V~~~l~~-IrP~L~~dGGdv~lv~v~~~~V~V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~~~v~~V~   66 (68)
T PF01106_consen    1 VEEVLEE-IRPYLQSDGGDVELVDVDDGVVYVRLTGACSGCPSSDMTLKQGIEQALREAVPEVKRVV   66 (68)
T ss_dssp             HHHHHHH-CHHHHHHTTEEEEEEEEETTEEEEEEESSCCSSCCHHHHHHHHHHHHHHHHSTT-SEEE
T ss_pred             CHHHHHH-hChHHHhcCCcEEEEEecCCEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCCceEE
Confidence            6899996 9999999999999999999977775  9999999999999999999999 799998885

These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.

>TIGR03341 YhgI_GntY IscR-regulated protein YhgI

Probab=98.84  E-value=1.4e-09  Score=89.24  Aligned_cols=69  Identities=23%  Similarity=0.347  Sum_probs=61.4

Q ss_pred             HHHHHhhccCCccccCCCceEEEEecC-CcccCC--CccccCCCcccccCChHHhhhc-ccCCeeEEEeecce
Q psy1153           2 IKELLDTRIRPTVQEDGGDIQFISFQD-GVLEEP--GQTIDFPTGQAAYCSPLGKLLF-RIEGVKSVFFGHDF   70 (195)
Q Consensus         2 ~~~~l~~~irp~~~~d~g~~~fi~~e~-~~~vl~--gg~~~f~~~~~a~~~~La~~Lf-~i~gV~~V~~~~df   70 (195)
                      |+++|+.+|||+|+.|||+++|+.+++ +.++|.  |+|.+|+++..|.+..+.++|. .+|+|++|.-..|+
T Consensus       110 i~~~l~~~irP~l~~dGGdielv~v~~~~~v~v~l~GaC~gC~~s~~Tl~~~ie~~l~~~~p~v~~V~~~~~~  182 (190)
T TIGR03341       110 INYVLQSEINPQLASHGGKVTLVEITDDGVAVLQFGGGCNGCSMVDVTLKDGVEKTLLERFPELKGVRDATDH  182 (190)
T ss_pred             HHHHHHhccCHHHHhcCCceEEEEEcCCCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCcceEEEecCc
Confidence            788998899999999999999999975 565665  9999999999999999999998 69999999877654

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.

>PRK11190 Fe/S biogenesis protein NfuA; Provisional

Probab=98.82  E-value=2e-09  Score=88.35  Aligned_cols=68  Identities=16%  Similarity=0.256  Sum_probs=59.9

Q ss_pred             HHHHHhhccCCccccCCCceEEEEecC-CcccCC--CccccCCCcccccCChHHhhhc-ccC-CeeEEEeecc
Q psy1153           2 IKELLDTRIRPTVQEDGGDIQFISFQD-GVLEEP--GQTIDFPTGQAAYCSPLGKLLF-RIE-GVKSVFFGHD   69 (195)
Q Consensus         2 ~~~~l~~~irp~~~~d~g~~~fi~~e~-~~~vl~--gg~~~f~~~~~a~~~~La~~Lf-~i~-gV~~V~~~~d   69 (195)
                      |+++|+++|||+|+.||||++|+.+++ |..+|.  |+|.+|+++..|++..+.++|. .+| +|++|.-..+
T Consensus       111 i~~~l~~~irP~l~~dGGdielv~v~~~~~v~v~l~GaC~gC~~s~~Tl~~~Ie~~l~~~~p~~i~~v~~v~~  183 (192)
T PRK11190        111 VEYVLQSQINPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPGELKGVRDLTE  183 (192)
T ss_pred             HHHHHHhccChhHHhcCCcEEEEEEcCCCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCHhhceEEEecc
Confidence            789999999999999999999999975 665554  9999999999999999999998 588 9999876554

>KOG2358|consensus

Probab=98.58  E-value=2.3e-08  Score=81.99  Aligned_cols=68  Identities=34%  Similarity=0.592  Sum_probs=59.5

Q ss_pred             CHHHHHhhccCCccccCCCceEEEEecCC--cccC--CCccccCCCcccccCChHHhhhc-ccCCeeEEEeec
Q psy1153           1 MIKELLDTRIRPTVQEDGGDIQFISFQDG--VLEE--PGQTIDFPTGQAAYCSPLGKLLF-RIEGVKSVFFGH   68 (195)
Q Consensus         1 ~~~~~l~~~irp~~~~d~g~~~fi~~e~~--~~vl--~gg~~~f~~~~~a~~~~La~~Lf-~i~gV~~V~~~~   68 (195)
                      |||++|++||||+++.|||++.|+.+++|  ...+  .|.|.+|+++..+.++.+.++|. .++.||.|.=+.
T Consensus       127 ~ikelietRiRp~i~edggdi~y~g~e~g~g~v~lklqgact~cpss~vtlk~Gie~mL~~y~~eVK~v~qv~  199 (213)
T KOG2358|consen  127 TIKELIETRIRPKIQEDGGDEDYVGFETGLGLVSLKLQGACTECPSSLVTLKNGIENMLEIYVPEVKGVIQVP  199 (213)
T ss_pred             HHHHHHHHhhhhhhhccCCceeeccccCccchHHHHHhhhhccCCcccchhhhhHHHHHHhhcceeeEEEecc
Confidence            68999999999999999999999999994  3333  48999999999999999999998 688888876543

>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU

Probab=98.47  E-value=7.7e-08  Score=83.68  Aligned_cols=62  Identities=21%  Similarity=0.357  Sum_probs=56.0

Q ss_pred             HHHHHhhccCCccccCCCceEEEEecCCcccCC--CccccCCCcccccCChHHhhhc-ccCCeeEEE
Q psy1153           2 IKELLDTRIRPTVQEDGGDIQFISFQDGVLEEP--GQTIDFPTGQAAYCSPLGKLLF-RIEGVKSVF   65 (195)
Q Consensus         2 ~~~~l~~~irp~~~~d~g~~~fi~~e~~~~vl~--gg~~~f~~~~~a~~~~La~~Lf-~i~gV~~V~   65 (195)
                      |+++| ++|||+|+.|||+++|+.+++|..++.  |+|.+|+++..|.+. +.+.|. .+|.+..|.
T Consensus       224 v~~~l-~~irP~l~~dGGdv~lv~v~~~~v~v~l~GaC~gC~~s~~Tl~~-Ie~~l~~~~p~~~~V~  288 (290)
T TIGR02000       224 IQKVL-EEVRPVLQADGGDVELYDVDGKIVYVVLTGACSGCSMSTMTLKG-IQQRLRERLGEFVVVE  288 (290)
T ss_pred             HHHHH-HHhCchHhhcCCcEEEEEEeCCEEEEEEeeCCCCCcchHHHHHH-HHHHHHHhCCCceEEE
Confidence            67889 599999999999999999998877776  899999999999998 999998 699998886

Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.

>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function

Probab=97.57  E-value=0.00059  Score=46.82  Aligned_cols=68  Identities=21%  Similarity=0.414  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhcCchhhhc---cCCcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCcccee
Q psy1153         123 VQMIKELLDTRIRPTVQE---DGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGL  192 (195)
Q Consensus       123 ~~~i~~~l~~~irP~l~~---dGG~ie~v~~~~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~  192 (195)
                      +++|.++|.+..-|.+..   +-|-|+=+.+++|.|+|.|.-...+|| ....|+..|++.|+ .+|++++|.
T Consensus         1 k~~V~~aL~~v~dP~~~~~iv~~g~V~~i~i~~~~V~v~l~l~~~~~~-~~~~l~~~i~~~l~-~l~gv~~V~   71 (72)
T PF01883_consen    1 KQAVRDALKQVKDPELGKDIVELGMVRDISIEGGKVSVSLELPTPACP-AAEPLREEIREALK-ALPGVKSVK   71 (72)
T ss_dssp             HHHHHHHHTT-BETTTSSBTTTTTSEEEEEECTCEEEEEE--SSTTHT-THHHHHHHHHHHHH-TSTT-SEEE
T ss_pred             CHHHHHHHhCCCCCCCCCCHHHcCCeeEEEEECCEEEEEEEECCCCch-HHHHHHHHHHHHHH-hCCCCceEe
Confidence            367889999899998886   458899999999999999999999999 55889999999999 799998875

The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.

>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]

Probab=96.83  E-value=0.0089  Score=45.08  Aligned_cols=72  Identities=28%  Similarity=0.350  Sum_probs=59.4

Q ss_pred             chHHHHHHHHHHHhcCchhhhc---cCCcEEEEEEe--CCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCcccee
Q psy1153         119 DDETVQMIKELLDTRIRPTVQE---DGGDIQFISFQ--GGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGL  192 (195)
Q Consensus       119 ~~~~~~~i~~~l~~~irP~l~~---dGG~ie~v~~~--~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~  192 (195)
                      ...+.++|.++|.+.+.|.|.-   +-|-|+=+.++  +|.++|+|+..-.|||++. -+..-++++|++ +|+++.|.
T Consensus        10 ~~~~~~~i~~aL~~V~DPEi~idIvdLGLVy~v~i~~~~~~v~v~mtlT~~gCP~~~-~i~~~v~~al~~-~~~v~~v~   86 (111)
T COG2151          10 IKVTLEDILEALKTVIDPEIGIDIVDLGLVYEVDIDDVDGLVKVKMTLTSPGCPLAE-VIADQVEAALEE-IPGVEDVE   86 (111)
T ss_pred             hhhhHHHHHHHhhcCCCcccceeeEeeccEEEEEEecCCceEEEEEecCCCCCCccH-HHHHHHHHHHHh-cCCcceEE
Confidence            4567889999999999999985   67888888886  4599999999999999994 455789999888 77776654

>TIGR02945 SUF_assoc FeS assembly SUF system protein

Probab=95.32  E-value=0.14  Score=37.02  Aligned_cols=69  Identities=22%  Similarity=0.321  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhcCchhhhc---cCCcEEEEEEeC-CEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCcccee
Q psy1153         122 TVQMIKELLDTRIRPTVQE---DGGDIQFISFQG-GVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGL  192 (195)
Q Consensus       122 ~~~~i~~~l~~~irP~l~~---dGG~ie~v~~~~-g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~  192 (195)
                      +.++|.++|.+..-|.+..   .-|-|.=+.+++ |.|++.+.-...+||.. ..|+..++..|.. +|++.+|.
T Consensus         2 ~~~~I~~~L~~v~dP~l~~~lv~~g~V~~i~v~~~~~v~i~l~l~~p~~~~~-~~l~~~i~~al~~-l~gv~~v~   74 (99)
T TIGR02945         2 LKDAVIEALKTVYDPEIPVNIYELGLIYDIDVDDDGHVDIQMTLTAPNCPVA-GSMPGEVENAVRA-VPGVGSVT   74 (99)
T ss_pred             HHHHHHHHHcCCCCCCCCCCeecCCCeeEEEECCCCeEEEEEEECCCCCChH-HHHHHHHHHHHHh-CCCCceEE
Confidence            4578999999888898876   445566667775 89999999988899977 5588899999976 78877664

Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.

>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT

Probab=95.09  E-value=0.19  Score=40.81  Aligned_cols=72  Identities=18%  Similarity=0.233  Sum_probs=59.0

Q ss_pred             chHHHHHHHHHHHhcCchhhhc---cCCcEEEEEEeC---C--EEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccc
Q psy1153         119 DDETVQMIKELLDTRIRPTVQE---DGGDIQFISFQG---G--VVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTP  190 (195)
Q Consensus       119 ~~~~~~~i~~~l~~~irP~l~~---dGG~ie~v~~~~---g--~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~  190 (195)
                      ++...++|.++|.+..-|.+..   +-|-|+=+.+++   +  .|+|.|.-...+|++. ..|+..|+.+|.. +|++++
T Consensus        71 ~~~~ee~V~eaL~tV~DPei~~nIVeLGlV~~I~Id~~~~~~~~V~I~mtLt~p~c~~~-~~L~~dV~~aL~~-l~gV~~  148 (174)
T TIGR03406        71 GEDNEDQVWEQLRTVYDPEIPVNIVDLGLVYGCRVEKLGEGQFRVDIEMTLTAPGCGMG-PVLVEDVEDKVLA-VPNVDE  148 (174)
T ss_pred             ccccHHHHHHHHcCCCCCCCCCChHHcCCeEEEEEecccCCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHHh-CCCcee
Confidence            3445688999999999999886   567787778876   6  8999999999999987 6677889999975 788877


Q ss_pred             ee
Q psy1153         191 GL  192 (195)
Q Consensus       191 V~  192 (195)
                      |.
T Consensus       149 V~  150 (174)
T TIGR03406       149 VE  150 (174)
T ss_pred             EE
Confidence            64

The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.

>PRK11670 antiporter inner membrane protein; Provisional

Probab=85.37  E-value=4.5  Score=36.37  Aligned_cols=69  Identities=12%  Similarity=0.066  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHhcCchhhhc---cCCcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCcccee
Q psy1153         122 TVQMIKELLDTRIRPTVQE---DGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGL  192 (195)
Q Consensus       122 ~~~~i~~~l~~~irP~l~~---dGG~ie~v~~~~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~  192 (195)
                      ..++|.++|....-|.+..   .-|-|.=+.++++.+++.+.-.-.+||.. ..++..+++.|+. +|++++|.
T Consensus        13 ~~~~v~~~l~~v~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~   84 (369)
T PRK11670         13 LRAMVAGTLANFQHPTLKHNLTTLKALHHVALLDDTLHIELVMPFVWNSAF-EELKEQCSAELLR-ITGAKAID   84 (369)
T ss_pred             hHHHHHHHHhcCCCCCCCCChhhhCCeeEEEEeCCEEEEEEEECCCCchHH-HHHHHHHHHHHHh-cCCCceEE
Confidence            4588999999888898886   45666667788899999998888889977 5588899999987 78887654

>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit

Probab=84.78  E-value=3.9  Score=32.16  Aligned_cols=48  Identities=17%  Similarity=0.365  Sum_probs=39.7

Q ss_pred             cCCcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccce
Q psy1153         141 DGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPG  191 (195)
Q Consensus       141 dGG~ie~v~~~~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V  191 (195)
                      +-|-|.=+.++++.|.|.|.-.-++||+. ..|++.|+++|+..  ++.+|
T Consensus        13 dLG~Vr~V~v~gd~V~VtIt~Ty~gcpa~-e~L~~~I~~aL~~~--Gv~~V   60 (146)
T TIGR02159        13 DLGMVREVDVDGGGVVVKFTPTYSGCPAL-EVIRQDIRDAVRAL--GVEVV   60 (146)
T ss_pred             hcCCeeEEEEECCEEEEEEEeCCCCCchH-HHHHHHHHHHHHhc--CCCeE
Confidence            45778888888999999999999999987 67889999999883  55544

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PF02061 Lambda_CIII: Lambda Phage CIII; InterPro: IPR013056 Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]

Probab=81.32  E-value=1.9  Score=26.76  Aligned_cols=25  Identities=16%  Similarity=0.147  Sum_probs=21.7

Q ss_pred             cccCCCCcchHHHHHHHHHHHHHhh
Q psy1153         160 QGSCTSCPSSVVTLKNGVQNMLQFY  184 (195)
Q Consensus       160 ~GaC~gCp~s~~tl~~~Ie~~l~~~  184 (195)
                      +++|.|||.-+..|.+.|-..||.-
T Consensus         7 G~~~~G~~ql~ESLLdrItRklr~g   31 (45)
T PF02061_consen    7 GWPRMGCPQLSESLLDRITRKLRDG   31 (45)
T ss_pred             CccccCCchhhHHHHHHHHHHHHHH
Confidence            5799999988888999999999874

Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	195
1veh_A	92	Solution Structure Of Rsgi Ruh-018, A Nifu-Like Dom		1e-25
2ltm_A	107	Solution Nmr Structure Of Nfu1 Iron-Sulfur Cluster		5e-24
2jnv_A	91	Solution Structure Of C-Terminal Domain Of Nifu-Lik		4e-11
2z51_A	154	Crystal Structure Of Arabidopsis Cnfu Involved In I		3e-10
1xhj_A	88	Solution Structure Of The Staphylococcus Epidermidi		8e-10
2k1h_A	94	Solution Nmr Structure Of Ser13 From Staphylococcus		1e-04

>pdb|1VEH|A Chain A, Solution Structure Of Rsgi Ruh-018, A Nifu-Like Domain Of Hirip5 Protein From Mouse Cdna Length = 92

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 50/65 (76%), Positives = 60/65 (92%)
Query: 123 VQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQ 182
           V MIKELLDTRIRPTVQEDGGD+ +  F+ G+V+LK+QGSCTSCPSS++TLK+G+QNMLQ
Sbjct: 15  VAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQ 74
Query: 183 FYIPE 187
           FYIPE
Sbjct: 75  FYIPE 79

>pdb|2LTM|A Chain A, Solution Nmr Structure Of Nfu1 Iron-Sulfur Cluster Scaffold Homolog From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr2876b Length = 107

Iteration: 1
 Score =  107 bits (267), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 48/71 (67%), Positives = 63/71 (88%)
Query: 36  QTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIMD 95
           +T+DFPT  AA+ SPL + LFRIEGVKSVFFG D ITVTK+++++DW LLKP+I+ATIMD
Sbjct: 36  RTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDSITVTKENEELDWNLLKPDIYATIMD 95
Query: 96  FFSSGLPVLTD 106
           FF+SGLP++T+
Sbjct: 96  FFASGLPLVTE 106

>pdb|2JNV|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like Protein From Oryza Sativa Length = 91

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 122 TVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNML 181
           T   ++ +LD ++RP +  DGGD+      G VV+LK+QG+C SCPSS++T+K G++  L
Sbjct: 6   TAGNVESVLD-QVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIERRL 64
Query: 182 QFYIPETT 189
              IP+  
Sbjct: 65  MEKIPDVA 72

>pdb|2Z51|A Chain A, Crystal Structure Of Arabidopsis Cnfu Involved In Iron- Sulfur Cluster Biosynthesis Length = 154

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 122 TVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNML 181
           T + ++ +LD  IRP +  DGG++      G VV++K+QG+C SCPSS +T+K G++  L
Sbjct: 5   TEENVESVLD-EIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRL 63
Query: 182 QFYIPE 187
              IPE
Sbjct: 64  MEKIPE 69

>pdb|1XHJ|A Chain A, Solution Structure Of The Staphylococcus Epidermidis Protein Se0630. Northest Structural Genomics Consortium Target Ser8 Length = 88

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 133 RIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIP 186
           R+RP +  DGGD   +  + G+VKL++ G+C +CPSS +TLK G++  L   +P
Sbjct: 18  RLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVP 71

>pdb|2K1H|A Chain A, Solution Nmr Structure Of Ser13 From Staphylococcus Epidermidis. Northeast Structural Genomics Consortium Target Ser13 Length = 94

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 31 LEEPGQTIDFPTGQAAYCS--PLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPE 88
          L EP Q   F T  AA          LF IEGVKS+F+  DFI++ K+ D+ +W  L P+
Sbjct: 19 LSEPRQDNSFTTYTAAQEGQPEFINRLFEIEGVKSIFYVLDFISIDKE-DNANWNELLPQ 77
Query: 89 I 89
          I
Sbjct: 78 I 78

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	195
1veh_A	92	NIFU-like protein hirip5; structural genomics, mou	3e-44
1veh_A	92	NIFU-like protein hirip5; structural genomics, mou	2e-12
1xhj_A	88	Nitrogen fixation protein NIFU; alpha-beta, NIFU-l	2e-36
1xhj_A	88	Nitrogen fixation protein NIFU; alpha-beta, NIFU-l	3e-09
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	4e-33
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	7e-16
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	4e-08
2ltm_A	107	NFU1 iron-sulfur cluster scaffold homolog, mitoch;	2e-23
1pqx_A	91	Conserved hypothetical protein; ZR18,structure, au	7e-21
1th5_A	74	NIFU1; iron-sulfur cluster binding, structural gen	5e-19
2k1h_A	94	Uncharacterized protein Ser13; structural genomics	2e-18
2ltl_A	119	NIFU-like protein, mitochondrial; structural genom	2e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-04

>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1 Length = 92

 Score =  141 bits (357), Expect = 3e-44
 Identities = 56/78 (71%), Positives = 68/78 (87%)

Query: 110 SSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSS 169
           SS +   E+DDE V MIKELLDTRIRPTVQEDGGD+ +  F+ G+V+LK+QGSCTSCPSS
Sbjct: 2   SSGSSGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSS 61

Query: 170 VVTLKNGVQNMLQFYIPE 187
           ++TLK+G+QNMLQFYIPE
Sbjct: 62  IITLKSGIQNMLQFYIPE 79

>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1 Length = 92

 Score = 59.6 bits (145), Expect = 2e-12
 Identities = 23/31 (74%), Positives = 28/31 (90%)

Query: 1  MIKELLDTRIRPTVQEDGGDIQFISFQDGVL 31
          MIKELLDTRIRPTVQEDGGD+ +  F+DG++
Sbjct: 17 MIKELLDTRIRPTVQEDGGDVIYRGFEDGIV 47

>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1 Length = 88

 Score =  121 bits (306), Expect = 2e-36
 Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 115 IHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLK 174
           +  ++      + E+++ R+RP +  DGGD   +  + G+VKL++ G+C +CPSS +TLK
Sbjct: 1   MPTENPTMFDQVAEVIE-RLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLK 59

Query: 175 NGVQNMLQFYIPE 187
            G++  L   +P 
Sbjct: 60  AGIERALHEEVPG 72

>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1 Length = 88

 Score = 50.7 bits (122), Expect = 3e-09
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 1  MIKELLDTRIRPTVQEDGGDIQFISFQDGV 30
           + E+++ R+RP +  DGGD   +  +DG+
Sbjct: 11 QVAEVIE-RLRPFLLRDGGDCTLVDVEDGI 39

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A Length = 154

 Score =  115 bits (289), Expect = 4e-33
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 120 DETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQN 179
             T + ++ +LD  IRP +  DGG++      G VV++K+QG+C SCPSS +T+K G++ 
Sbjct: 3   PLTEENVESVLD-EIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIER 61

Query: 180 MLQFYIPE 187
            L   IPE
Sbjct: 62  RLMEKIPE 69

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A Length = 154

 Score = 70.2 bits (172), Expect = 7e-16
 Identities = 12/72 (16%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 116 HEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKN 175
               +   + I+++L+      +    G +  +  +  +VK+++ G      + V+T++ 
Sbjct: 80  ETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPA----AGVMTVRV 135

Query: 176 GVQNMLQFYIPE 187
            V   L+  IP 
Sbjct: 136 AVTQKLREKIPS 147

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A Length = 154

 Score = 49.8 bits (119), Expect = 4e-08
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 1  MIKELLDTRIRPTVQEDGGDIQFISFQDGV 30
           ++ +LD  IRP +  DGG++        V
Sbjct: 8  NVESVLD-EIRPYLMSDGGNVALHEIDGNV 36

>2ltm_A NFU1 iron-sulfur cluster scaffold homolog, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens} Length = 107

 Score = 88.7 bits (220), Expect = 2e-23
 Identities = 48/73 (65%), Positives = 63/73 (86%)

Query: 34  PGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATI 93
             +T+DFPT  AA+ SPL + LFRIEGVKSVFFG D ITVTK+++++DW LLKP+I+ATI
Sbjct: 34  ETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDSITVTKENEELDWNLLKPDIYATI 93

Query: 94  MDFFSSGLPVLTD 106
           MDFF+SGLP++T+
Sbjct: 94  MDFFASGLPLVTE 106

>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A Length = 91

 Score = 81.7 bits (202), Expect = 7e-21
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 34  PGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATI 93
            G T D  T            + ++EGVKS+F   DFI+V K ++D +W+ + P++ A  
Sbjct: 24  EGMTSDTYTKVDDSQPAFINDILKVEGVKSIFHVMDFISVDK-ENDANWETVLPKVEAVF 82

Query: 94  MDFFSSG 100
                  
Sbjct: 83  ELEHHHH 89

>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1 Length = 74

 Score = 76.2 bits (188), Expect = 5e-19
 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 120 DETVQMIKELLDTRIRPTVQED-GGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQ 178
           +   + ++++L+  IRP +    GG +QF+  +G +VK+++ G          T++  V 
Sbjct: 3   ELNEENVEKVLN-EIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVV----RTVRIAVS 57

Query: 179 NMLQFYIPE 187
             L+  IP 
Sbjct: 58  KKLREKIPS 66

>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis} Length = 94

 Score = 75.2 bits (185), Expect = 2e-18
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 34 PGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATI 93
                +   Q          LF IEGVKS+F+  DFI++ K +D+ +W  L P+I  T 
Sbjct: 25 DNSFTTYTAAQEG-QPEFINRLFEIEGVKSIFYVLDFISIDK-EDNANWNELLPQIENTF 82

Query: 94 MD 95
            
Sbjct: 83 AK 84

>2ltl_A NIFU-like protein, mitochondrial; structural genomics, northeast structural consortium, NESG, PSI-biology; NMR {Saccharomyces cerevisiae} Length = 119

 Score = 73.5 bits (180), Expect = 2e-17
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 23  FISFQDGVLEEPGQTIDF----PTGQAAYCSPLGKLLF-RIEGVKSVFFGHDFITVTKQD 77
           F+S  DG + +   +               S L + +F +  GV+S+  G DF+T+ K D
Sbjct: 32  FLS-TDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVESLMIGDDFLTINK-D 89

Query: 78  DDVDWKLLKPEIFATIMDFFSSGLPVLTD 106
             V W  +KPEI   +    + G  V++ 
Sbjct: 90  RMVHWNSIKPEIIDLLTKQLAYGEDVISK 118

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 8e-05
 Identities = 37/189 (19%), Positives = 60/189 (31%), Gaps = 52/189 (27%)

Query: 38  IDFPTGQAAYCSPLGKLL----------FRIEGV----KSVFFGHDFITVTKQDDDVD-- 81
           +DF TG+  Y      +L          F  + V    KS+    +   +    D V   
Sbjct: 7   MDFETGEHQYQY--KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 82  ----WKLL-KPEIFATIMDFFSSGL----PVLTDA------QPSSDTVIHEDDDE----T 122
               W LL K E    +  F    L      L         QPS  T ++ +  +     
Sbjct: 65  LRLFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 123 VQMIKELLDTR------IRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNG 176
            Q+  +   +R      +R  + E     + +   G      + GS  +  +  V L   
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLEL-RPAKNVLIDG------VLGSGKTWVALDVCLSYK 175

Query: 177 VQNMLQFYI 185
           VQ  + F I
Sbjct: 176 VQCKMDFKI 184

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 5/28 (17%)

Query: 172 TLKNGVQNMLQFYIPETTPGL----NME 195
            LK  +Q  L+ Y  ++ P L     ME
Sbjct: 21  ALKK-LQASLKLYADDSAPALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	195
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	99.97
1veh_A	92	NIFU-like protein hirip5; structural genomics, mou	99.96
1xhj_A	88	Nitrogen fixation protein NIFU; alpha-beta, NIFU-l	99.95
1th5_A	74	NIFU1; iron-sulfur cluster binding, structural gen	99.89
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	99.89
2ltm_A	107	NFU1 iron-sulfur cluster scaffold homolog, mitoch;	99.75
2ltl_A	119	NIFU-like protein, mitochondrial; structural genom	99.73
2k1h_A	94	Uncharacterized protein Ser13; structural genomics	99.79
1pqx_A	91	Conserved hypothetical protein; ZR18,structure, au	99.75
1veh_A	92	NIFU-like protein hirip5; structural genomics, mou	99.15
1xhj_A	88	Nitrogen fixation protein NIFU; alpha-beta, NIFU-l	99.14
1th5_A	74	NIFU1; iron-sulfur cluster binding, structural gen	98.77
3cq1_A	103	Putative uncharacterized protein TTHB138; DTDP-4-k	98.16
3lno_A	108	Putative uncharacterized protein; alpha-beta fold,	97.78
1uwd_A	103	Hypothetical protein TM0487; similar to PAAD prote	97.59
3ux2_A	130	MIP18 family protein FAM96A; immune system, DUF59,	89.97

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A

Probab=99.97  E-value=9.6e-32  Score=211.84  Aligned_cols=142  Identities=20%  Similarity=0.365  Sum_probs=123.3

Q ss_pred             HHHHHhhccCCccccCCCceEEEEecCCcccCC--CccccCCCcccccCChHHhhhc-ccCCeeEEEeecceEEEEecCC
Q psy1153           2 IKELLDTRIRPTVQEDGGDIQFISFQDGVLEEP--GQTIDFPTGQAAYCSPLGKLLF-RIEGVKSVFFGHDFITVTKQDD   78 (195)
Q Consensus         2 ~~~~l~~~irp~~~~d~g~~~fi~~e~~~~vl~--gg~~~f~~~~~a~~~~La~~Lf-~i~gV~~V~~~~dfVtVtk~~~   78 (195)
                      |+++|+ +|||+|+.||||++|+.+++|..++.  |+|.+|+++..|.+..+.+.|. .+|+|+.|....+         
T Consensus         9 v~~~L~-~iRP~l~~dGGdvelv~v~~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpev~~V~~v~~---------   78 (154)
T 2z51_A            9 VESVLD-EIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPD---------   78 (154)
T ss_dssp             HHHHHH-HHHHHHHHTTEEEEEEEEETTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEEEECCS---------
T ss_pred             HHHHHH-HhChHHHhcCCeEEEEEEECCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCCceEEEEccC---------
Confidence            678997 89999999999999999998877775  8899999999999999999999 6999988875431         


Q ss_pred             CCCccchhHHHHHHHHHhhhcCCCcccCCCCCCCCCCCCCchHHHHHHHHHHHhcCchhhhc-cCCcEEEEEEeCCEEEE
Q psy1153          79 DVDWKLLKPEIFATIMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQE-DGGDIQFISFQGGVVKL  157 (195)
Q Consensus        79 ~~~W~~l~~~i~~~I~d~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~irP~l~~-dGG~ie~v~~~~g~v~v  157 (195)
                      ...+                                    .+-..++|+++|+ .|||+|++ ||||++|+++++|+|+|
T Consensus        79 ~~e~------------------------------------l~L~~~~v~~~L~-~iRP~L~~~dGGdvelv~v~~~~v~v  121 (154)
T 2z51_A           79 EETG------------------------------------LELNEENIEKVLE-EIRPYLIGTADGSLDLVEIEDPIVKI  121 (154)
T ss_dssp             SCCS------------------------------------CCSSHHHHHHHHH-HHGGGCCGGGCCEEEEEEEETTEEEE
T ss_pred             chhh------------------------------------hHHHHHHHHHHHH-HHHHHhhhcCCCCeEEEEEECCEEEE
Confidence            1000                                    0112578999999 69999997 99999999999999999


Q ss_pred             EEcccCCCCcchHHHHHHHHHHHHHhhCCCccceeeC
Q psy1153         158 KMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGLNM  194 (195)
Q Consensus       158 ~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~~~  194 (195)
                      ||+|+|+||    +||+.+||++||+++|+|++|..+
T Consensus       122 ~l~Gac~~~----~Tlk~~Ie~~l~e~vP~i~~V~~~  154 (154)
T 2z51_A          122 RITGPAAGV----MTVRVAVTQKLREKIPSIAAVQLI  154 (154)
T ss_dssp             EEESGGGGC----HHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred             EEecCCccc----HhHHHHHHHHHHHHCCCccEEEeC
Confidence            999999998    799999999999999999999764

>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1

Probab=99.96  E-value=8.6e-30  Score=184.60  Aligned_cols=81  Identities=67%  Similarity=1.075  Sum_probs=77.3

Q ss_pred             CCCCCchHHHHHHHHHHHhcCchhhhccCCcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccceee
Q psy1153         114 VIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGLN  193 (195)
Q Consensus       114 ~~~~~~~~~~~~i~~~l~~~irP~l~~dGG~ie~v~~~~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~~  193 (195)
                      ..+++++++.++|+++|+++|||+|++|||||+|++|++|+|+|||+|||+|||||++||+++||++|++++|++++|..
T Consensus         6 ~~~~~d~~~~~~I~~~L~~~IRP~L~~dGGdvelv~v~~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~V~~   85 (92)
T 1veh_A            6 SGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQ   85 (92)
T ss_dssp             SSCSSCCHHHHHHHHHHHHTTHHHHHHHSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEE
T ss_pred             ccCCCchHHHHHHHHHHHHHhhHHHHhcCCeEEEEEEeCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCEEEE
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             C
Q psy1153         194 M  194 (195)
Q Consensus       194 ~  194 (195)
                      +
T Consensus        86 v   86 (92)
T 1veh_A           86 V   86 (92)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1

Probab=99.95  E-value=7.4e-29  Score=178.21  Aligned_cols=75  Identities=31%  Similarity=0.679  Sum_probs=71.5

Q ss_pred             chHHHHHHHHHHHhcCchhhhccCCcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccceeeC
Q psy1153         119 DDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGLNM  194 (195)
Q Consensus       119 ~~~~~~~i~~~l~~~irP~l~~dGG~ie~v~~~~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~~~  194 (195)
                      ++++.++|+++|++ |||+|++|||||+|++|++|+|+|||+|||+|||||++||+++||++|++++|+++.|..+
T Consensus         5 ~~~~~~~I~~~L~~-IRP~L~~dGGdvelv~v~~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~v   79 (88)
T 1xhj_A            5 NPTMFDQVAEVIER-LRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQV   79 (88)
T ss_dssp             CSCHHHHHHHHHHH-HHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred             hHHHHHHHHHHHHH-hcHHHHhcCCeEEEEEEECCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEec
Confidence            45689999999996 9999999999999999999999999999999999999999999999999999999999864

>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1

Probab=99.89  E-value=2.9e-24  Score=149.64  Aligned_cols=69  Identities=25%  Similarity=0.457  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHhcCchhhhccC-CcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccceeeCC
Q psy1153         122 TVQMIKELLDTRIRPTVQEDG-GDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGLNME  195 (195)
Q Consensus       122 ~~~~i~~~l~~~irP~l~~dG-G~ie~v~~~~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~~~~  195 (195)
                      +.++|+++|++ |||+|++|| ||++|++|++|+|+|||+|||+||    +||+++||++|++++|++++|..+.
T Consensus         5 ~~~~V~~~L~~-iRP~L~~dGGGdvelv~v~~g~V~v~l~GaC~gc----~Tlk~gIe~~L~~~vpei~~V~~v~   74 (74)
T 1th5_A            5 NEENVEKVLNE-IRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVV----RTVRIAVSKKLREKIPSIQIVQLLS   74 (74)
T ss_dssp             SHHHHHHHHTT-THHHHTTTTCCCCCCCEEETTEEEECCCSSSSSS----SSHHHHHHHHHHHHCTTCSEEEECC
T ss_pred             HHHHHHHHHHH-HhHHHHhcCCCcEEEEEEeCCEEEEEEecCCcch----HHHHHHHHHHHHHHCCCCcEEEeCC
Confidence            47899999995 999999999 999999999999999999999999    6999999999999999999998763

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A

Probab=99.89  E-value=7.6e-24  Score=166.73  Aligned_cols=71  Identities=38%  Similarity=0.706  Sum_probs=68.3

Q ss_pred             HHHHHHHHHhcCchhhhccCCcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccceeeC
Q psy1153         123 VQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGLNM  194 (195)
Q Consensus       123 ~~~i~~~l~~~irP~l~~dGG~ie~v~~~~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~~~  194 (195)
                      .++|+++|+ +|||+|++|||||+|++|++|+|+|||+|||+|||||++||+++||++|++++|+++.|..+
T Consensus         6 ~e~v~~~L~-~iRP~l~~dGGdvelv~v~~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpev~~V~~v   76 (154)
T 2z51_A            6 EENVESVLD-EIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEAL   76 (154)
T ss_dssp             HHHHHHHHH-HHHHHHHHTTEEEEEEEEETTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred             HHHHHHHHH-HhChHHHhcCCeEEEEEEECCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCCceEEEEc
Confidence            578999998 79999999999999999999999999999999999999999999999999999999999865

>2ltm_A NFU1 iron-sulfur cluster scaffold homolog, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}

Probab=99.75  E-value=7.6e-23  Score=151.59  Aligned_cols=86  Identities=62%  Similarity=0.987  Sum_probs=79.5

Q ss_pred             CceEEEEecC-----------CcccCCCccccCCCcccccCChHHhhhcccCCeeEEEeecceEEEEe-cCCCCCccchh
Q psy1153          19 GDIQFISFQD-----------GVLEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTK-QDDDVDWKLLK   86 (195)
Q Consensus        19 g~~~fi~~e~-----------~~~vl~gg~~~f~~~~~a~~~~La~~Lf~i~gV~~V~~~~dfVtVtk-~~~~~~W~~l~   86 (195)
                      -.-||||+|+           |+.++++|+.+|++..+|..||||++||+++||++||++.||||||| .+ +.+|+.|+
T Consensus         8 ~~~~~~qtE~TPNPntLKF~p~~~vl~~gs~eF~~~~~a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~~-~~dW~~ik   86 (107)
T 2ltm_A            8 HSHMFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDSITVTKENE-ELDWNLLK   86 (107)
Confidence            3458888877           88888877999999999999999999999999999999999999999 74 89999999


Q ss_pred             HHHHHHHHHhhhcCCCccc
Q psy1153          87 PEIFATIMDFFSSGLPVLT  105 (195)
Q Consensus        87 ~~i~~~I~d~l~s~~~~~~  105 (195)
                      |+|+++|++||.||.|++.
T Consensus        87 p~V~~~I~~~~~sG~pvv~  105 (107)
T 2ltm_A           87 PDIYATIMDFFASGLPLVT  105 (107)
Confidence            9999999999999999875

>2ltl_A NIFU-like protein, mitochondrial; structural genomics, northeast structural consortium, NESG, PSI-biology; NMR {Saccharomyces cerevisiae}

Probab=99.73  E-value=3.1e-22  Score=150.86  Aligned_cols=88  Identities=24%  Similarity=0.393  Sum_probs=80.1

Q ss_pred             CCCceEEEEecC------------CcccCCC--c-cccCCCccccc--CChHHhhhc-ccCCeeEEEeecceEEEEecCC
Q psy1153          17 DGGDIQFISFQD------------GVLEEPG--Q-TIDFPTGQAAY--CSPLGKLLF-RIEGVKSVFFGHDFITVTKQDD   78 (195)
Q Consensus        17 d~g~~~fi~~e~------------~~~vl~g--g-~~~f~~~~~a~--~~~La~~Lf-~i~gV~~V~~~~dfVtVtk~~~   78 (195)
                      ..+|.||||+|+            |+.++++  | +.+|++..++.  .+|||++|| +++||++||++.|||||||.+ 
T Consensus        12 ~~~R~mfIqtE~TPNPntLKF~sp~~~vl~~~~g~t~~f~~~~~a~~~~SPLA~~LF~~i~GV~~Vf~g~DFITVtK~~-   90 (119)
T 2ltl_A           12 NSQRLIHIKTLTTPNENALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVESLMIGDDFLTINKDR-   90 (119)
Confidence            357899999987            5677775  5 89999998888  899999999 999999999999999999996 


Q ss_pred             CCCccchhHHHHHHHHHhhhcCCCccc
Q psy1153          79 DVDWKLLKPEIFATIMDFFSSGLPVLT  105 (195)
Q Consensus        79 ~~~W~~l~~~i~~~I~d~l~s~~~~~~  105 (195)
                      +++|+.|+|+|+++|++||.||.|++.
T Consensus        91 ~~dW~~ikp~I~~~I~e~~~sg~pvv~  117 (119)
T 2ltl_A           91 MVHWNSIKPEIIDLLTKQLAYGEDVIS  117 (119)
Confidence            999999999999999999999999875

>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}

Probab=99.79  E-value=9.7e-20  Score=132.17  Aligned_cols=69  Identities=29%  Similarity=0.423  Sum_probs=63.3

Q ss_pred             CCcccCCCccccCCCcccccCChHHhhhcccCCeeEEEeecceEEEEecCCCCCccchhHHHHHHHHHhhh
Q psy1153          28 DGVLEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIMDFFS   98 (195)
Q Consensus        28 ~~~~vl~gg~~~f~~~~~a~~~~La~~Lf~i~gV~~V~~~~dfVtVtk~~~~~~W~~l~~~i~~~I~d~l~   98 (195)
                      .|+.+.+|++.+|++.+ |..||||++||+++||++||+++|||||||.+ +++|++|+|+|+++|++|+-
T Consensus        19 ~~~~l~~g~s~~f~~~~-a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~-~~dW~~ikp~I~~~I~~~~~   87 (94)
T 2k1h_A           19 LSEPRQDNSFTTYTAAQ-EGQPEFINRLFEIEGVKSIFYVLDFISIDKED-NANWNELLPQIENTFAKSNL   87 (94)
T ss_dssp             CCCCCTTCCCCEECCCC-TTSCHHHHHHHTSTTEEEEEEETTEEEEEECT-TCCHHHHHHHHHHHHHHHC-
T ss_pred             CCCCcCCCCceecCCcc-ccCCHHHHHhhCCCCeeEEEEeCCEEEEecCC-CCCHHHHHHHHHHHHHHHHH
Confidence            47775567799999998 99999999999999999999999999999996 99999999999999999985

>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A

Probab=99.75  E-value=6.2e-19  Score=127.23  Aligned_cols=66  Identities=24%  Similarity=0.361  Sum_probs=60.5

Q ss_pred             CCcccCCCccccCCCcccccCChHHhhhcccCCeeEEEeecceEEEEecCCCCCccchhHHHHHHHHH
Q psy1153          28 DGVLEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIMD   95 (195)
Q Consensus        28 ~~~~vl~gg~~~f~~~~~a~~~~La~~Lf~i~gV~~V~~~~dfVtVtk~~~~~~W~~l~~~i~~~I~d   95 (195)
                      .|+.+.+|++.+|++.+ +..||||++||+++||++||++.|||||||.+ +++|++|+|+|+++|++
T Consensus        19 ~~~~l~~g~s~~F~~~~-a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~-~~dW~~ikp~V~~~I~~   84 (91)
T 1pqx_A           19 LSESREGMTSDTYTKVD-DSQPAFINDILKVEGVKSIFHVMDFISVDKEN-DANWETVLPKVEAVFEL   84 (91)
T ss_dssp             CSCCSSCCCCEEESSSC-SSCCHHHHHHHHSTTEEEEEEETTEEEEEECT-TSCSTTTHHHHHHHTCS
T ss_pred             CCcCcCCCCceEeCCcc-ccCCHHHHHhhCCCCeeEEEEeCCEEEEecCC-CCCHHHHHHHHHHHHHH
Confidence            47775557799999998 99999999999999999999999999999996 99999999999998865

>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1

Probab=99.15  E-value=1.9e-12  Score=93.35  Aligned_cols=68  Identities=44%  Similarity=0.633  Sum_probs=61.8

Q ss_pred             CHHHHHhhccCCccccCCCceEEEEecCCcccCC--CccccCCCcccccCChHHhhhc-ccCCeeEEEeec
Q psy1153           1 MIKELLDTRIRPTVQEDGGDIQFISFQDGVLEEP--GQTIDFPTGQAAYCSPLGKLLF-RIEGVKSVFFGH   68 (195)
Q Consensus         1 ~~~~~l~~~irp~~~~d~g~~~fi~~e~~~~vl~--gg~~~f~~~~~a~~~~La~~Lf-~i~gV~~V~~~~   68 (195)
                      +|+++|+++|||+|+.||||++|+.+++|..+|.  |+|.+|+++..|.+..+.++|. .+|+|+.|.-..
T Consensus        17 ~I~~~L~~~IRP~L~~dGGdvelv~v~~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~V~~v~   87 (92)
T 1veh_A           17 MIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQVS   87 (92)
T ss_dssp             HHHHHHHHTTHHHHHHHSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEECS
T ss_pred             HHHHHHHHHhhHHHHhcCCeEEEEEEeCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCEEEEcC
Confidence            4789999999999999999999999998877776  8899999999999999999999 699999987653

>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1

Probab=99.14  E-value=4e-12  Score=90.98  Aligned_cols=66  Identities=23%  Similarity=0.450  Sum_probs=60.3

Q ss_pred             HHHHHhhccCCccccCCCceEEEEecCCcccCC--CccccCCCcccccCChHHhhhc-ccCCeeEEEeec
Q psy1153           2 IKELLDTRIRPTVQEDGGDIQFISFQDGVLEEP--GQTIDFPTGQAAYCSPLGKLLF-RIEGVKSVFFGH   68 (195)
Q Consensus         2 ~~~~l~~~irp~~~~d~g~~~fi~~e~~~~vl~--gg~~~f~~~~~a~~~~La~~Lf-~i~gV~~V~~~~   68 (195)
                      |+++|+. |||+|+.||||++|+.+++|..++.  |+|.+|+++..|.+..+.++|. .+|+|+.|....
T Consensus        12 I~~~L~~-IRP~L~~dGGdvelv~v~~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~v~   80 (88)
T 1xhj_A           12 VAEVIER-LRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVF   80 (88)
T ss_dssp             HHHHHHH-HHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEEE
T ss_pred             HHHHHHH-hcHHHHhcCCeEEEEEEECCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEecc
Confidence            7899995 9999999999999999998887776  9999999999999999999999 699999987654

>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1

Probab=98.77  E-value=8.5e-10  Score=76.41  Aligned_cols=60  Identities=22%  Similarity=0.421  Sum_probs=52.3

Q ss_pred             HHHHHhhccCCccccCC-CceEEEEecCCcccCC--CccccCCCcccccCChHHhhhc-ccCCeeEEEe
Q psy1153           2 IKELLDTRIRPTVQEDG-GDIQFISFQDGVLEEP--GQTIDFPTGQAAYCSPLGKLLF-RIEGVKSVFF   66 (195)
Q Consensus         2 ~~~~l~~~irp~~~~d~-g~~~fi~~e~~~~vl~--gg~~~f~~~~~a~~~~La~~Lf-~i~gV~~V~~   66 (195)
                      |+++|+ +|||+|+.|| ||++|+.+++|..++.  |+|.+|    .|.+..+.++|. .+|+|+.|..
T Consensus         9 V~~~L~-~iRP~L~~dGGGdvelv~v~~g~V~v~l~GaC~gc----~Tlk~gIe~~L~~~vpei~~V~~   72 (74)
T 1th5_A            9 VEKVLN-EIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVV----RTVRIAVSKKLREKIPSIQIVQL   72 (74)
T ss_dssp             HHHHHT-TTHHHHTTTTCCCCCCCEEETTEEEECCCSSSSSS----SSHHHHHHHHHHHHCTTCSEEEE
T ss_pred             HHHHHH-HHhHHHHhcCCCcEEEEEEeCCEEEEEEecCCcch----HHHHHHHHHHHHHHCCCCcEEEe
Confidence            789998 5999999999 9999999998877776  878877    578888999999 6999999864

>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*

Probab=98.16  E-value=8.9e-06  Score=59.01  Aligned_cols=70  Identities=19%  Similarity=0.179  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHhcCchhhhccC---CcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCcccee
Q psy1153         121 ETVQMIKELLDTRIRPTVQEDG---GDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGL  192 (195)
Q Consensus       121 ~~~~~i~~~l~~~irP~l~~dG---G~ie~v~~~~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~  192 (195)
                      ...++|.++|.+.+.|.+..+-   |-|+-+.+++|.|+|.|...+.+||.. .+++..|+++|++ +|++.+|.
T Consensus         6 ~~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~V~v~l~lt~~~cp~~-~~l~~~i~~al~~-l~gv~~V~   78 (103)
T 3cq1_A            6 PLEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLH-DSLGEAVRQALSR-LPGVEEVE   78 (103)
T ss_dssp             HHHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEETTEEEEEECCSSSSCCSS-CHHHHHHHHHHHT-STTCCEEE
T ss_pred             hHHHHHHHHHhCCCCCCCCcCchhcCceEEEEEECCEEEEEEEECCCCCcHH-HHHHHHHHHHHHh-CCCceeEE
Confidence            3567899999999999999866   899999999999999999999999985 7888999999974 89988764

>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0

Probab=97.78  E-value=6.2e-05  Score=55.04  Aligned_cols=73  Identities=15%  Similarity=0.211  Sum_probs=63.3

Q ss_pred             chHHHHHHHHHHHhcCchhhhc---cCCcEEEEEEeC-CEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCcccee
Q psy1153         119 DDETVQMIKELLDTRIRPTVQE---DGGDIQFISFQG-GVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGL  192 (195)
Q Consensus       119 ~~~~~~~i~~~l~~~irP~l~~---dGG~ie~v~~~~-g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~  192 (195)
                      .+...++|.++|.+.+.|.+..   +-|-|+=+.+++ |.|+|.|.-...+||.. ..++..|+++|+..+|++++|.
T Consensus         6 ~~~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~~~~V~V~ltlt~p~cp~~-~~i~~~i~~al~~~l~Gv~~V~   82 (108)
T 3lno_A            6 QEAFENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITMTMTSIGCPMA-GQIVSDVKKVLSTNVPEVNEIE   82 (108)
T ss_dssp             HHHHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECTTCCEEEEECCSCTTCTTH-HHHHHHHHHHHHHHCTTCCCEE
T ss_pred             hhhhHHHHHHHHcCCCCCCCCCCHHHcCCceEEEECCCCeEEEEEEECCCCCcHH-HHHHHHHHHHHHHhCCCCceEE
Confidence            3456788999999999999986   478999999985 99999999999999987 6889999999966699998875

>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A

Probab=97.59  E-value=0.00019  Score=51.80  Aligned_cols=68  Identities=16%  Similarity=0.128  Sum_probs=58.6

Q ss_pred             HHHHHHHHHhcCchhhhccC---CcEEEEEEeC-CEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCcccee
Q psy1153         123 VQMIKELLDTRIRPTVQEDG---GDIQFISFQG-GVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGL  192 (195)
Q Consensus       123 ~~~i~~~l~~~irP~l~~dG---G~ie~v~~~~-g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~  192 (195)
                      .++|.++|.+.+-|.+..+-   |-|+=+.+++ |.|+|.|.-.+.+||.. ..++..|+++|++ +|++.+|.
T Consensus         8 ~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~~V~v~l~lt~~~cp~~-~~l~~~i~~al~~-l~gv~~v~   79 (103)
T 1uwd_A            8 KEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLA-GMILSDAEEAIKK-IEGVNNVE   79 (103)
T ss_dssp             HHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSSH-HHHHHHHHHHHHT-SSSCCEEE
T ss_pred             HHHHHHHHcCCCCCCCCcChhhcCCeeEEEEcCCCEEEEEEEECCCCCcHH-HHHHHHHHHHHHh-CCCcceEE
Confidence            56899999988889998754   8888888985 89999999999999985 8889999999975 89888764

>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A

Probab=89.97  E-value=0.18  Score=38.01  Aligned_cols=69  Identities=12%  Similarity=0.086  Sum_probs=47.8

Q ss_pred             HHHHHHHHHhcCchhhhc---cCCcEEEEEE-------eCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCcccee
Q psy1153         123 VQMIKELLDTRIRPTVQE---DGGDIQFISF-------QGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGL  192 (195)
Q Consensus       123 ~~~i~~~l~~~irP~l~~---dGG~ie~v~~-------~~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~  192 (195)
                      .+.|-++|.+-..|.+..   +-|-|.-+.+       +++.|.|.|+-.=+|||++ ..+...|+.+|++.+|...+|.
T Consensus        10 ~~eI~d~L~~I~DPEiPvtl~dLGvV~~v~I~v~~~~~~~~~V~V~~TPT~p~Cp~a-~~I~l~Ir~kL~~~lp~~~kV~   88 (130)
T 3ux2_A           10 ALEVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLA-TLIGLCLRVKLQRCLPFKHKLE   88 (130)
T ss_dssp             HHHHHHHHTTCBCSSSSSBTTTTTSCCGGGEEEEEEETTEEEEEECCCCCCCSSCHH-HHHHHHHHHHHHHHCSSCCCCC
T ss_pred             HHHHHHHHhcCCCCCCCCCHHHCCeeeecceEeecccCCCCeEEEEEEeCCCCCCch-HHHHHHHHHHHHHhCCCceEEE
Confidence            445666676666666653   4444433322       2467999999999999999 4555799999999888765543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	195
d1veha_	92	d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {	8e-32
d1veha_	92	d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {	4e-09
d1xhja_	88	d.52.8.1 (A:) Nitrogen fixation protein NifU homol	5e-26
d1xhja_	88	d.52.8.1 (A:) Nitrogen fixation protein NifU homol	2e-06
d1th5a1	73	d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {	9e-18
d1th5a1	73	d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {	0.002
d2ffma1	83	d.267.1.1 (A:1-83) Hypothetical protein SAV1430 {S	5e-14

>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 92

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: HIRA-interacting protein 5, HIRIP5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (271), Expect = 8e-32
 Identities = 56/78 (71%), Positives = 68/78 (87%)

Query: 110 SSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSS 169
           SS +   E+DDE V MIKELLDTRIRPTVQEDGGD+ +  F+ G+V+LK+QGSCTSCPSS
Sbjct: 2   SSGSSGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSS 61

Query: 170 VVTLKNGVQNMLQFYIPE 187
           ++TLK+G+QNMLQFYIPE
Sbjct: 62  IITLKSGIQNMLQFYIPE 79

>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 92

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: HIRA-interacting protein 5, HIRIP5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.5 bits (118), Expect = 4e-09
 Identities = 23/31 (74%), Positives = 28/31 (90%)

Query: 1  MIKELLDTRIRPTVQEDGGDIQFISFQDGVL 31
          MIKELLDTRIRPTVQEDGGD+ +  F+DG++
Sbjct: 17 MIKELLDTRIRPTVQEDGGDVIYRGFEDGIV 47

>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: Nitrogen fixation protein NifU homolog SE0630
species: Staphylococcus epidermidis [TaxId: 1282]

 Score = 93.7 bits (233), Expect = 5e-26
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 117 EDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNG 176
            ++      + E+++ R+RP +  DGGD   +  + G+VKL++ G+C +CPSS +TLK G
Sbjct: 3   TENPTMFDQVAEVIE-RLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAG 61

Query: 177 VQNMLQFYIPE 187
           ++  L   +P 
Sbjct: 62  IERALHEEVPG 72

>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: Nitrogen fixation protein NifU homolog SE0630
species: Staphylococcus epidermidis [TaxId: 1282]

 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 2  IKELLDTRIRPTVQEDGGDIQFISFQDGVL 31
          + E+++ R+RP +  DGGD   +  +DG++
Sbjct: 12 VAEVIE-RLRPFLLRDGGDCTLVDVEDGIV 40

>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]} Length = 73

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: NifU-like protein 1, NIFUL1
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 71.7 bits (176), Expect = 9e-18
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 120 DETVQMIKELLDTRIRPTVQ-EDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQ 178
           +   + ++++L+  IRP +    GG +QF+  +G +VK+++ G          T++  V 
Sbjct: 2   ELNEENVEKVLN-EIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVR----TVRIAVS 56

Query: 179 NMLQFYIPETT 189
             L+  IP   
Sbjct: 57  KKLREKIPSIQ 67

>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]} Length = 73

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: NifU-like protein 1, NIFUL1
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 33.6 bits (77), Expect = 0.002
 Identities = 8/31 (25%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 2  IKELLDTRIRPTVQ-EDGGDIQFISFQDGVL 31
          ++++L+  IRP +    GG +QF+  +  ++
Sbjct: 8  VEKVLN-EIRPYLAGTGGGGLQFLMIKGPIV 37

>d2ffma1 d.267.1.1 (A:1-83) Hypothetical protein SAV1430 {Staphylococcus aureus [TaxId: 1280]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein SAV1430
superfamily: Hypothetical protein SAV1430
family: Hypothetical protein SAV1430
domain: Hypothetical protein SAV1430
species: Staphylococcus aureus [TaxId: 1280]

 Score = 62.5 bits (152), Expect = 5e-14
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 33 EPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFAT 92
          E   +  +     +        + ++EGVKS+F   DFI+V K ++D +W+ + P++ A 
Sbjct: 24 EGMTSDTYTKVDDS-QPAFINDILKVEGVKSIFHVMDFISVDK-ENDANWETVLPKVEAV 81

Query: 93 I 93
           
Sbjct: 82 F 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	195
d1veha_	92	HIRA-interacting protein 5, HIRIP5 {Mouse (Mus mus	99.96
d1xhja_	88	Nitrogen fixation protein NifU homolog SE0630 {Sta	99.95
d1th5a1	73	NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [	99.88
d2ffma1	83	Hypothetical protein SAV1430 {Staphylococcus aureu	99.59
d1veha_	92	HIRA-interacting protein 5, HIRIP5 {Mouse (Mus mus	99.09
d1xhja_	88	Nitrogen fixation protein NifU homolog SE0630 {Sta	99.02
d1th5a1	73	NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [	98.67
d2cu6a1	91	Hypothetical protein TTHB138 {Thermus thermophilus	97.67
d1uwda_	102	Hypothetical protein TM0487 {Thermotoga maritima [	97.25
d1q8la_	84	Menkes copper-transporting ATPase {Human (Homo sap	80.43

>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: HIRA-interacting protein 5, HIRIP5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.1e-29  Score=182.39  Aligned_cols=80  Identities=68%  Similarity=1.093  Sum_probs=77.1

Q ss_pred             CCCCchHHHHHHHHHHHhcCchhhhccCCcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccceeeC
Q psy1153         115 IHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGLNM  194 (195)
Q Consensus       115 ~~~~~~~~~~~i~~~l~~~irP~l~~dGG~ie~v~~~~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~~~  194 (195)
                      .+++|+++.++|+++|+.+|||+|++|||+|+|++|++|+|+|+|+|+|+|||+|++||+++||++||+++|+|+.|..+
T Consensus         7 ~~~~d~e~~~~I~~vL~~~IrP~l~~dGGdv~lv~v~~g~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~~vpev~~V~~v   86 (92)
T d1veha_           7 GSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQV   86 (92)
T ss_dssp             SCSSCCHHHHHHHHHHHHTTHHHHHHHSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEEC
T ss_pred             CCCccHHHHHHHHHHHHHhcChHHHHcCCceEEEEeeCCeEEEEEccCCCCChhHHHHHHHHHHHHHHHHCCCcceEEEc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999876

>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: Nitrogen fixation protein NifU homolog SE0630
species: Staphylococcus epidermidis [TaxId: 1282]

Probab=99.95  E-value=1.2e-28  Score=175.41  Aligned_cols=76  Identities=32%  Similarity=0.703  Sum_probs=72.8

Q ss_pred             CchHHHHHHHHHHHhcCchhhhccCCcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccceeeC
Q psy1153         118 DDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGLNM  194 (195)
Q Consensus       118 ~~~~~~~~i~~~l~~~irP~l~~dGG~ie~v~~~~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~~~  194 (195)
                      +++++.++|+++|+ +|||+|++|||+|+|+++++|+|+|||+|||+|||+|++||+++||++|++++|+++.|.++
T Consensus         4 ~~~~l~~~I~~vLe-~IRP~l~~dGGdvelv~v~~g~V~v~l~GaC~gC~~s~~Tlk~~Ie~~L~~~vpev~~V~~V   79 (88)
T d1xhja_           4 ENPTMFDQVAEVIE-RLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQV   79 (88)
T ss_dssp             CCSCHHHHHHHHHH-HHHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred             CcHHHHHHHHHHHH-HhhHHHHhCCCcEEEEeccCCEEEEEecCCCCCCccHHHHHHHHHHHHHHHHCCCCceEEEe
Confidence            46789999999998 79999999999999999999999999999999999999999999999999999999999874

>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: NifU-like protein 1, NIFUL1
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.88  E-value=1.6e-23  Score=143.84  Aligned_cols=67  Identities=25%  Similarity=0.479  Sum_probs=63.2

Q ss_pred             HHHHHHHHHhcCchhhh-ccCCcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccceeeC
Q psy1153         123 VQMIKELLDTRIRPTVQ-EDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGLNM  194 (195)
Q Consensus       123 ~~~i~~~l~~~irP~l~-~dGG~ie~v~~~~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~~~  194 (195)
                      .++|+.+|+ +|||+|+ +|||||+|+++++|+|+|||+|+|+||+    ||+++||++|++++|||+.|..+
T Consensus         5 ee~V~~vL~-eirP~l~a~dGGdvelv~i~~~~v~v~l~GaC~gC~----Tl~~gIe~~L~~~iPei~~V~~v   72 (73)
T d1th5a1           5 EENVEKVLN-EIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVR----TVRIAVSKKLREKIPSIQIVQLL   72 (73)
T ss_dssp             HHHHHHHHT-TTHHHHTTTTCCCCCCCEEETTEEEECCCSSSSSSS----SHHHHHHHHHHHHCTTCSEEEEC
T ss_pred             HHHHHHHHH-HhcccccccCCceEEEEEecCCEEEEEecCCCcccc----hHHHHHHHHHHHHCCCccEEEec
Confidence            678999999 7999997 6999999999999999999999999994    99999999999999999999865

>d2ffma1 d.267.1.1 (A:1-83) Hypothetical protein SAV1430 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein SAV1430
superfamily: Hypothetical protein SAV1430
family: Hypothetical protein SAV1430
domain: Hypothetical protein SAV1430
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.59  E-value=6.3e-16  Score=108.12  Aligned_cols=63  Identities=25%  Similarity=0.431  Sum_probs=55.9

Q ss_pred             CcccCCCccccCCCcccccCChHHhhhcccCCeeEEEeecceEEEEecCCCCCccchhHHHHHHH
Q psy1153          29 GVLEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATI   93 (195)
Q Consensus        29 ~~~vl~gg~~~f~~~~~a~~~~La~~Lf~i~gV~~V~~~~dfVtVtk~~~~~~W~~l~~~i~~~I   93 (195)
                      |..+..+++..|.+.+ +..+||+++||+++||++||+++|||||||.+ +.+|++|+++|++.+
T Consensus        20 ~~~l~~~~~~~~~~~~-~~~~pla~~Lf~i~gV~~Vf~~~dFITVtK~~-~~~W~~l~~~I~~~~   82 (83)
T d2ffma1          20 SESREGMTSDTYTKVD-DSQPAFINDILKVEGVKSIFHVMDFISVDKEN-DANWETVLPKVEAVF   82 (83)
T ss_dssp             SSCCSSSCCEEECSCC-TTSCHHHHHHHTSTTEEEEEEETTEEEEEECT-TCCHHHHHHHHHHTT
T ss_pred             CccccCCCceeeCchh-hhcCHHHHHHHcCCCceEEEEeCCEEEEEeCC-CCCHHHHHHHHHHHh
Confidence            6777778888888765 56799999999999999999999999999996 999999999998753

>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: HIRA-interacting protein 5, HIRIP5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=3.3e-12  Score=90.44  Aligned_cols=68  Identities=43%  Similarity=0.612  Sum_probs=62.0

Q ss_pred             HHHHHhhccCCccccCCCceEEEEecCCcccCC--CccccCCCcccccCChHHhhhc-ccCCeeEEEeecc
Q psy1153           2 IKELLDTRIRPTVQEDGGDIQFISFQDGVLEEP--GQTIDFPTGQAAYCSPLGKLLF-RIEGVKSVFFGHD   69 (195)
Q Consensus         2 ~~~~l~~~irp~~~~d~g~~~fi~~e~~~~vl~--gg~~~f~~~~~a~~~~La~~Lf-~i~gV~~V~~~~d   69 (195)
                      |+++|+.+|||+|+.|||++.|+.+++|..++.  |+|..|+++..|.+..+.++|. .+|+|+.|.-..+
T Consensus        18 I~~vL~~~IrP~l~~dGGdv~lv~v~~g~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~~vpev~~V~~v~~   88 (92)
T d1veha_          18 IKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQVSG   88 (92)
T ss_dssp             HHHHHHHTTHHHHHHHSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEECSC
T ss_pred             HHHHHHHhcChHHHHcCCceEEEEeeCCeEEEEEccCCCCChhHHHHHHHHHHHHHHHHCCCcceEEEcCC
Confidence            789999999999999999999999999987776  8999999999999999999999 6999999975543

>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: Nitrogen fixation protein NifU homolog SE0630
species: Staphylococcus epidermidis [TaxId: 1282]

Probab=99.02  E-value=8.1e-12  Score=87.69  Aligned_cols=64  Identities=25%  Similarity=0.507  Sum_probs=58.3

Q ss_pred             HHHHHhhccCCccccCCCceEEEEecCCcccCC--CccccCCCcccccCChHHhhhc-ccCCeeEEEe
Q psy1153           2 IKELLDTRIRPTVQEDGGDIQFISFQDGVLEEP--GQTIDFPTGQAAYCSPLGKLLF-RIEGVKSVFF   66 (195)
Q Consensus         2 ~~~~l~~~irp~~~~d~g~~~fi~~e~~~~vl~--gg~~~f~~~~~a~~~~La~~Lf-~i~gV~~V~~   66 (195)
                      |+++|+ +|||+|+.|||++.|+.+++|..++.  |+|.+|+++..|.+..+.+.|. .+|+|.+|.-
T Consensus        12 I~~vLe-~IRP~l~~dGGdvelv~v~~g~V~v~l~GaC~gC~~s~~Tlk~~Ie~~L~~~vpev~~V~~   78 (88)
T d1xhja_          12 VAEVIE-RLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQ   78 (88)
T ss_dssp             HHHHHH-HHHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred             HHHHHH-HhhHHHHhCCCcEEEEeccCCEEEEEecCCCCCCccHHHHHHHHHHHHHHHHCCCCceEEE
Confidence            688997 89999999999999999999988886  9999999999999999999999 6998888764

>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: NifU-like protein 1, NIFUL1
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.67  E-value=1.3e-09  Score=73.57  Aligned_cols=60  Identities=22%  Similarity=0.423  Sum_probs=51.5

Q ss_pred             HHHHHhhccCCccc-cCCCceEEEEecCCcccCC--CccccCCCcccccCChHHhhhc-ccCCeeEEEe
Q psy1153           2 IKELLDTRIRPTVQ-EDGGDIQFISFQDGVLEEP--GQTIDFPTGQAAYCSPLGKLLF-RIEGVKSVFF   66 (195)
Q Consensus         2 ~~~~l~~~irp~~~-~d~g~~~fi~~e~~~~vl~--gg~~~f~~~~~a~~~~La~~Lf-~i~gV~~V~~   66 (195)
                      |+++|+ .|||+++ .|||+++|+.+++|..++.  |+|.+|+    |.+..+.+.|. .+|+|+.|-+
T Consensus         8 V~~vL~-eirP~l~a~dGGdvelv~i~~~~v~v~l~GaC~gC~----Tl~~gIe~~L~~~iPei~~V~~   71 (73)
T d1th5a1           8 VEKVLN-EIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVR----TVRIAVSKKLREKIPSIQIVQL   71 (73)
T ss_dssp             HHHHHT-TTHHHHTTTTCCCCCCCEEETTEEEECCCSSSSSSS----SHHHHHHHHHHHHCTTCSEEEE
T ss_pred             HHHHHH-HhcccccccCCceEEEEEecCCEEEEEecCCCcccc----hHHHHHHHHHHHHCCCccEEEe
Confidence            678898 8999998 5999999999999988876  8899993    66678999998 6999998864

>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TTHB138
species: Thermus thermophilus [TaxId: 274]

Probab=97.67  E-value=8.1e-05  Score=51.25  Aligned_cols=69  Identities=17%  Similarity=0.167  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHhcCchhhhc---cCCcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCcccee
Q psy1153         122 TVQMIKELLDTRIRPTVQE---DGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGL  192 (195)
Q Consensus       122 ~~~~i~~~l~~~irP~l~~---dGG~ie~v~~~~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~  192 (195)
                      +.++|.++|.+.+.|.+..   +-|-|+=+.+++|.|+|.|.-.+.+||.. ..+.+.++.+|+. +|++.+|.
T Consensus         2 le~~v~eaL~~V~DPe~~~dIv~LGlV~~i~i~~~~v~v~l~lt~~~cp~~-~~i~~~i~~al~~-l~gv~~V~   73 (91)
T d2cu6a1           2 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLH-DSLGEAVRQALSR-LPGVEEVE   73 (91)
T ss_dssp             HHHHHHHHHTTCEETTTTEETTTTTCEEEEEEETTEEEEEECCSSSSCCSS-CHHHHHHHHHHHT-STTCCEEE
T ss_pred             hHHHHHHHHhcCCCCCCCcChhhccceeEEEEeccccEEEEEcCCCCCcHH-HHHHHHHHHHHHc-CCCCceEE
Confidence            5789999999999999986   78999999999999999999999999988 5588899999975 89998874

>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TM0487
species: Thermotoga maritima [TaxId: 2336]

Probab=97.25  E-value=0.00041  Score=48.65  Aligned_cols=68  Identities=15%  Similarity=0.102  Sum_probs=59.1

Q ss_pred             HHHHHHHHHhcCchhhhc---cCCcEEEEEEeC-CEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCcccee
Q psy1153         123 VQMIKELLDTRIRPTVQE---DGGDIQFISFQG-GVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGL  192 (195)
Q Consensus       123 ~~~i~~~l~~~irP~l~~---dGG~ie~v~~~~-g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~  192 (195)
                      .++|.++|.+.+.|.+..   +-|-|+=+.+++ |.|.|.|.-.+.+||.. ..+.+.++++|++ +|+|.+|.
T Consensus         7 ~~~V~~aL~~V~DPe~~~dIV~LGlV~~i~I~~~g~V~v~~~lt~~~Cp~~-~~i~~~i~~al~~-~~gV~~v~   78 (102)
T d1uwda_           7 KEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLA-GMILSDAEEAIKK-IEGVNNVE   78 (102)
T ss_dssp             HHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSSH-HHHHHHHHHHHHT-SSSCCEEE
T ss_pred             HHHHHHHHhCCCCCCCCcceeeccceeeEEeccccceEEEEecCCCCCchH-HHHHHHHHHHHHc-CCCCceEE
Confidence            568899999999999974   778888888976 79999999999999987 6788899999996 89988774

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.43  E-value=0.73  Score=29.80  Aligned_cols=31  Identities=26%  Similarity=0.550  Sum_probs=23.2

Q ss_pred             EEEEEEcc-cCCCCcchHHHHHHHHHHHHHhhCCCcccee
Q psy1153         154 VVKLKMQG-SCTSCPSSVVTLKNGVQNMLQFYIPETTPGL  192 (195)
Q Consensus       154 ~v~v~l~G-aC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~  192 (195)
                      ++.++..| .|.+|...       ||+.|+. +|+|.+|.
T Consensus        10 ~v~l~V~GMtC~~C~~~-------Ie~~l~~-~~GV~~v~   41 (84)
T d1q8la_          10 VLKMKVEGMTCHSCTST-------IEGKIGK-LQGVQRIK   41 (84)
T ss_dssp             EEEEEECCTTTCSSCHH-------HHHHHHT-CTTEEEEE
T ss_pred             EEEEEECCeEcHHHHHH-------HHHHHhc-CCCceEEE
Confidence            57788888 89998754       6677776 88887764