Psyllid ID: psy11551

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-----
MIRHTQTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQRLTPDMNTQNTVSQTNNWINETLKNGNLPLVPVPSSQLQTISQRESNMQITQPASVPNSPLASPNIVQTTSASPVNFTPIPNTGDPNWQASKPTVRERNAAMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANKAAQLGILTLQETIDIFLHFTAHNKPHLSYPVKARAGLKPQRSVFFVRLTSLFPFPRYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANKAAQLGILTLQETIDIFLHFTAHNKPHLSYPVKARAGLKPQ
cEEccEEEEcccEEEEcccHHHHHHcccccccccccccccccccEEEcccccHHHHHHHHHcccccEEEEcHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEEEEcccccccEEEcccEEEEcccHHHHHHHccccccccccEEcccccHHHHHHHcccEEccEEEEcccHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEccHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccccccc
cccccEEccccHEEEEcccHHHHHHHcccccccccHHHHHccccEEEcccccHHHHHHHHHHHHcccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccHHHHHHHHHHHHHcccccEEEEEEcccccccccccHHEEEEEccHHHHHHHccccHHcccEEEcccccHHHHHHHHHHHHcccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHcHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHcccHccccccHHHHHHHHHHcHccccccccccccccccccccccEEccHHHHHHcccccccccEEEEcccEEEEEcHHHHHcHHHHHHHHHHHHHHHccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHccHHHHcccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHcccHcHccccHHHHHHHHHHccccccccccccccccccccc
mirhtqtipahKYVLATGSSVFYAMFYGGTYNLIYYgglaenkeeievpdvepsAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSqsrlfeepdlMQRCWEVIdaqrltpdmntqntvsQTNNWINEtlkngnlplvpvpssqlqtISQREsnmqitqpasvpnsplaspnivqttsaspvnftpipntgdpnwqaskptVRERNAAMFNNELMADVKFVvgssghtqtipahKYVLATGSSVFYAMFYgglaenkeeievpdvepsAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSqsrlfeepdlMQRCWEVIDAQAEMALksegfvdidmSTLESVFARETLNCKEMHLFEAALNWANAEcvrrdleptahnkrlVLGNALylvriptmslgeFANKAAQLGILTLQETIDIFLHFtahnkphlsypvkaraglkpqrsVFFVRltslfpfprylycddiQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSqsrlfeepdlMQRCWEVIDAQAEMALksegfvdidmSTLESVFARETLNCKEMHLFEAALNWANAEcvrrdleptahnkrlVLGNALylvriptmslgeFANKAAQLGILTLQETIDIFLHFtahnkphlsypvkaraglkpq
mirhtqtipahkyvLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAqrltpdmntqntVSQTNNWINETLKNGNLPLVPVPSSQLQTISQRESNMQITQPASVPNSPLASPNIVQTTSASPVNFTpipntgdpnwqaSKPTVRERNAAMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANKAAQLGILTLQETIDIFLHFTAHNKPHLSYPVKARAGLKPQRSVFFVRLTSLFPFPRYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANKAAQLGILTLQETIDIFLHFTAhnkphlsypvkaraglkpq
MIRHTQTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQRLTPDMNTQNTVSQTNNWINETLKNGNLPLVPVPSSQLQTISQRESNMQITQPASVPNSPLASPNIVQTTSASPVNFTPIPNTGDPNWQASKPTVRERNAAMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANKAAQLGILTLQETIDIFLHFTAHNKPHLSYPVKARAGLKPQRSVFFVRLTSLFPFPRYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANKAAQLGILTLQETIDIFLHFTAHNKPHLSYPVKARAGLKPQ
*******IPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQRLTP*********QTNNWINETLK****************************************************************************AMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANKAAQLGILTLQETIDIFLHFTAHNKPHLSYPVKARAGLKPQRSVFFVRLTSLFPFPRYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANKAAQLGILTLQETIDIFLHFTAHNKPHLSY***********
MIRHTQTIPAHKYVLATGSSVFYAMFYGGTYNLI***********IEVPDVEPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQRLTPDMNTQNTVSQTNNWINETLKNGNLPLVPVPSSQLQTISQRESNMQITQPASVPNSPLASPNIVQTTSASPVNFTPIPNTGDPNWQASKPTVRERNAAMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLA********PDVEPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNCKEMHLFEAALNWANAECVRRD**P**HNKRLVLGNALYLVRIPTMSLGEFANKAAQLGILTLQETIDIFLHFTAHNKPHLSYPVKARAGLKPQRSVFFVRLTSLFPFPRYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNCKEMHLFEAALNWANAECVRRD*****HNKRLVLGNALYLVRIPTMSLGEFANKAAQLGILTLQETIDIFLHFT*************RA*****
MIRHTQTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQRLTPDMNTQNTVSQTNNWINETLKNGNLPLVPVPSSQLQTISQRESNMQITQPASVPNSPLASPNIVQTTSASPVNFTPIPNTGDPNWQASKPTVRERNAAMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANKAAQLGILTLQETIDIFLHFTAHNKPHLSYPVKARAGLKPQRSVFFVRLTSLFPFPRYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANKAAQLGILTLQETIDIFLHFTAHNKPHLSYPVKARAGLKPQ
MIRHTQTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQRLTPDMNTQNTVSQTNNWINETLKNGNLPLVPVPSSQLQTIS*****MQITQPASVPNSPLASPNIV**********TPIPNTGDPNWQASKPTVRERNAAMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANKAAQLGILTLQETIDIFLHFTAHNKPHLSYPVKARAGLKPQRSVFFVRLTSLFPFPRYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANKAAQLGILTLQETIDIFLHFTAHNK****************
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIRHTQTIPAHKYVLATGSSVFYAMFYGGTYNLIYYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQRLTPDMNTQNTVSQTNNWINETLKNGNLPLVPVPSSQLQTISQRESNMQITQPASVPNSPLASPNIVQTTSASPVNFTPIPNTGDPNWQASKPTVRERNAAMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANKAAQLGILTLQETIDIFLHFTAHNKPHLSYPVKARAGLKPQRSVFFVRLTSLFPFPRYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANKAAQLGILTLQETIDIFLHFTAHNKPHLSYPVKARAGLKPQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query705 2.2.26 [Sep-21-2011]
P58545532 BTB/POZ domain-containing yes N/A 0.432 0.573 0.686 1e-118
Q9Y2F9522 BTB/POZ domain-containing no N/A 0.432 0.584 0.686 1e-118
Q5TZE1482 BTB/POZ domain-containing no N/A 0.435 0.636 0.657 1e-114
Q8K2J9488 BTB/POZ domain-containing no N/A 0.435 0.629 0.666 1e-114
Q96KE9485 BTB/POZ domain-containing no N/A 0.429 0.624 0.675 1e-114
Q2LE78529 BTB/POZ domain-containing N/A N/A 0.435 0.580 0.666 1e-113
Q0V9W6529 BTB/POZ domain-containing no N/A 0.435 0.580 0.663 1e-113
A9JRD8525 BTB/POZ domain-containing no N/A 0.435 0.584 0.621 1e-109
Q9BX70525 BTB/POZ domain-containing no N/A 0.378 0.508 0.514 2e-78
Q9H0C5482 BTB/POZ domain-containing no N/A 0.388 0.568 0.492 1e-72
>sp|P58545|BTBD3_MOUSE BTB/POZ domain-containing protein 3 OS=Mus musculus GN=Btbd3 PE=2 SV=1 Back     alignment and function desciption
 Score =  426 bits (1096), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/306 (68%), Positives = 236/306 (77%), Gaps = 1/306 (0%)

Query: 219 PNWQASKPTVRERNAAMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGG 278
           PNWQ   PT+RERNA MFNN+LMADV FVVG  G TQ +P HKYVLA GSSVF+AMFYG 
Sbjct: 107 PNWQGLYPTIRERNAVMFNNDLMADVHFVVGPPGGTQRLPGHKYVLAVGSSVFHAMFYGE 166

Query: 279 LAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYL 338
           LAE+K+EI +PDVEP+AFL +LKY+YCD+I L ADTVLATLY AKKYIVPHLARACV +L
Sbjct: 167 LAEDKDEIRIPDVEPAAFLAMLKYIYCDEIDLAADTVLATLYAAKKYIVPHLARACVNFL 226

Query: 339 ETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTLESVFARE 398
           ETSL+AKNAC+LLSQS LFEEPDL QRCWEVIDAQAE+ALKSEGF DID  TLES+  RE
Sbjct: 227 ETSLSAKNACVLLSQSCLFEEPDLTQRCWEVIDAQAELALKSEGFCDIDFQTLESILRRE 286

Query: 399 TLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANKAAQ 458
           TLN KE+ +FEAALNWA  EC R+DL  +  NKR VLG ALYL+RIPTM+L +FAN AAQ
Sbjct: 287 TLNAKEIVVFEAALNWAEVECQRQDLALSIENKRKVLGKALYLIRIPTMALDDFANGAAQ 346

Query: 459 LGILTLQETIDIFLHFTAHNKPHLSYPVKARAGLKPQRSVFFVRLTSLFPFPRYL-YCDD 517
            G+LTL ET DIFL +TA  KP L +  KAR GL PQR   F          RY   CD 
Sbjct: 347 SGVLTLNETNDIFLWYTASKKPELQFVSKARKGLVPQRCHRFQSCAYRSNQWRYRGRCDS 406

Query: 518 IQLEAD 523
           IQ   D
Sbjct: 407 IQFAVD 412

Mus musculus (taxid: 10090)
>sp|Q9Y2F9|BTBD3_HUMAN BTB/POZ domain-containing protein 3 OS=Homo sapiens GN=BTBD3 PE=2 SV=1 Back     alignment and function description
>sp|Q5TZE1|BTB6B_DANRE BTB/POZ domain-containing protein 6-B OS=Danio rerio GN=btbd6b PE=2 SV=1 Back     alignment and function description
>sp|Q8K2J9|BTBD6_MOUSE BTB/POZ domain-containing protein 6 OS=Mus musculus GN=Btbd6 PE=2 SV=2 Back     alignment and function description
>sp|Q96KE9|BTBD6_HUMAN BTB/POZ domain-containing protein 6 OS=Homo sapiens GN=BTBD6 PE=1 SV=3 Back     alignment and function description
>sp|Q2LE78|BTBD6_XENLA BTB/POZ domain-containing protein 6 OS=Xenopus laevis GN=btbd6 PE=1 SV=1 Back     alignment and function description
>sp|Q0V9W6|BTBD6_XENTR BTB/POZ domain-containing protein 6 OS=Xenopus tropicalis GN=btbd6 PE=2 SV=2 Back     alignment and function description
>sp|A9JRD8|BTB6A_DANRE BTB/POZ domain-containing protein 6-A OS=Danio rerio GN=btbd6a PE=1 SV=1 Back     alignment and function description
>sp|Q9BX70|BTBD2_HUMAN BTB/POZ domain-containing protein 2 OS=Homo sapiens GN=BTBD2 PE=1 SV=1 Back     alignment and function description
>sp|Q9H0C5|BTBD1_HUMAN BTB/POZ domain-containing protein 1 OS=Homo sapiens GN=BTBD1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query705
270009916515 hypothetical protein TcasGA2_TC009240 [T 0.517 0.708 0.738 1e-149
242018723525 BTB/POZ domain-containing protein, putat 0.527 0.708 0.711 1e-145
347971509664 AGAP004234-PA [Anopheles gambiae str. PE 0.492 0.522 0.699 1e-144
114051664535 BTB/POZ domain containing protein [Bomby 0.550 0.725 0.675 1e-144
357622231535 BTB/POZ domain containing protein [Danau 0.541 0.714 0.684 1e-143
308390271535 BTB domain-containing protein [Helicover 0.530 0.699 0.691 1e-142
312380562 878 hypothetical protein AND_07352 [Anophele 0.487 0.391 0.690 1e-141
328722773521 PREDICTED: BTB/POZ domain-containing pro 0.534 0.723 0.654 1e-139
307182267479 BTB/POZ domain-containing protein 3 [Cam 0.486 0.716 0.709 1e-139
157128812600 hypothetical protein AaeL_AAEL002428 [Ae 0.487 0.573 0.698 1e-139
>gi|270009916|gb|EFA06364.1| hypothetical protein TcasGA2_TC009240 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 282/382 (73%), Positives = 303/382 (79%), Gaps = 17/382 (4%)

Query: 144 TVSQTNNWIN-ETLKNGNLPLVPVPSSQLQTISQRESNMQITQPASVPNSPLASPNIVQT 202
           +VSQTN W+N ETL NG L L P        ISQRE N+Q+ QPAS              
Sbjct: 23  SVSQTNAWMNAETLNNGALSLSPP-----HIISQRE-NLQVMQPASA---------PGSP 67

Query: 203 TSASPVNFTPIPNTGDPNWQASKPTVRERNAAMFNNELMADVKFVVGSSGHTQTIPAHKY 262
            S+  V+ T  P T DPNWQASKPTVRERNAAMFNN+LMADV+F+VGS G TQ IPAHKY
Sbjct: 68  PSSPCVSPTGPPGTLDPNWQASKPTVRERNAAMFNNDLMADVRFIVGSPGATQDIPAHKY 127

Query: 263 VLATGSSVFYAMFYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLATLYVA 322
           VLATGSSVFYAMFYGGLAE KEEIEVPDVEPSAFLTLLKYLYCD+IQLEADTVLATLYVA
Sbjct: 128 VLATGSSVFYAMFYGGLAECKEEIEVPDVEPSAFLTLLKYLYCDEIQLEADTVLATLYVA 187

Query: 323 KKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEG 382
           KKYIVPHLARACV YLETSLTAKNACLLLSQSRLFEEP+LMQRCWEVIDAQAEMALKSEG
Sbjct: 188 KKYIVPHLARACVNYLETSLTAKNACLLLSQSRLFEEPELMQRCWEVIDAQAEMALKSEG 247

Query: 383 FVDIDMSTLESVFARETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLV 442
           FVDIDMSTLESV ARETLNCKEM+L EAALNWA AEC R+D+EPT  NKR VLGNALYL+
Sbjct: 248 FVDIDMSTLESVLARETLNCKEMNLLEAALNWAGAECARQDVEPTPQNKRAVLGNALYLI 307

Query: 443 RIPTMSLGEFANKAAQLGILTLQETIDIFLHFTAHNKPHLSYPVKARAGLKPQRSVFFVR 502
           RIPTM+L EFAN AAQ+GILT +ETI+IF HFTA+NKP L YP+K RAGLK Q    F  
Sbjct: 308 RIPTMTLDEFANGAAQMGILTQEETINIFFHFTANNKPSLQYPIKPRAGLKSQVCHRFQS 367

Query: 503 LTSLFPFPRYL-YCDDIQLEAD 523
                   RY   CD IQ   D
Sbjct: 368 CAYRSNQWRYRGRCDSIQFSVD 389

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242018723|ref|XP_002429823.1| BTB/POZ domain-containing protein, putative [Pediculus humanus corporis] gi|212514841|gb|EEB17085.1| BTB/POZ domain-containing protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|347971509|ref|XP_313147.4| AGAP004234-PA [Anopheles gambiae str. PEST] gi|333468701|gb|EAA08648.4| AGAP004234-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|114051664|ref|NP_001040171.1| BTB/POZ domain containing protein [Bombyx mori] gi|87248277|gb|ABD36191.1| BTB/POZ domain containing protein [Bombyx mori] Back     alignment and taxonomy information
>gi|357622231|gb|EHJ73795.1| BTB/POZ domain containing protein [Danaus plexippus] Back     alignment and taxonomy information
>gi|308390271|gb|ADO32579.1| BTB domain-containing protein [Helicoverpa armigera] Back     alignment and taxonomy information
>gi|312380562|gb|EFR26520.1| hypothetical protein AND_07352 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|328722773|ref|XP_001947196.2| PREDICTED: BTB/POZ domain-containing protein 3-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|307182267|gb|EFN69586.1| BTB/POZ domain-containing protein 3 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|157128812|ref|XP_001655205.1| hypothetical protein AaeL_AAEL002428 [Aedes aegypti] gi|108882160|gb|EAT46385.1| AAEL002428-PA [Aedes aegypti] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query705
FB|FBgn0262871677 lute "lute" [Drosophila melano 0.438 0.456 0.702 2.5e-119
MGI|MGI:2385155532 Btbd3 "BTB (POZ) domain contai 0.432 0.573 0.686 4.4e-109
MGI|MGI:3026623488 Btbd6 "BTB (POZ) domain contai 0.507 0.733 0.596 1.2e-104
ZFIN|ZDB-GENE-030829-65482 btbd6b "BTB (POZ) domain conta 0.490 0.717 0.595 2e-104
UNIPROTKB|Q96KE9485 BTBD6 "BTB/POZ domain-containi 0.470 0.684 0.630 1.1e-103
ZFIN|ZDB-GENE-080218-26525 btbd6a "BTB (POZ) domain conta 0.473 0.636 0.581 9.4e-98
UNIPROTKB|Q9BX70525 BTBD2 "BTB/POZ domain-containi 0.388 0.521 0.518 8.6e-72
UNIPROTKB|F1N4P1462 LOC533435 "Uncharacterized pro 0.388 0.593 0.518 1.1e-71
MGI|MGI:1933765488 Btbd1 "BTB (POZ) domain contai 0.431 0.622 0.469 3.8e-69
RGD|1310962488 Btbd1 "BTB (POZ) domain contai 0.431 0.622 0.469 3.8e-69
FB|FBgn0262871 lute "lute" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1113 (396.9 bits), Expect = 2.5e-119, Sum P(2) = 2.5e-119
 Identities = 220/313 (70%), Positives = 249/313 (79%)

Query:   215 NTGDPNWQASKPTVRERNAAMFNNELMADVKFVVGSS---GHTQTIPAHKYVLATGSSVF 271
             +T DPNWQASK TV ERNAAMFNNELM+DVKF+VG        QTIPAHKY+LATGSSVF
Sbjct:   185 DTADPNWQASKATVLERNAAMFNNELMSDVKFIVGGEFDIDPIQTIPAHKYILATGSSVF 244

Query:   272 YAMFYGGLAENKEEIEVPDVEPSAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLA 331
             YAMFYGGLAENK+EI+VPDVEP+AFLTLL+YLYCD+I+LE + +LATLY AKKYIVPHLA
Sbjct:   245 YAMFYGGLAENKQEIKVPDVEPTAFLTLLRYLYCDEIKLEPEHILATLYAAKKYIVPHLA 304

Query:   332 RACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEMALKSEGFVDIDMSTL 391
             RACV YLE  LTAKNACLLLSQSRLFEEP+LMQRCWEVIDAQAEMA+KSE FVDID+ T 
Sbjct:   305 RACVNYLEVKLTAKNACLLLSQSRLFEEPELMQRCWEVIDAQAEMAVKSEDFVDIDLKTF 364

Query:   392 ESVFARETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGE 451
             ES+ +RETLNCKE+HLFEAALNWA   C +  ++ T  NKR +LG AL+L+RIPTMSL E
Sbjct:   365 ESILSRETLNCKEIHLFEAALNWAMNACEKMSIDDTPQNKRRLLGQALHLIRIPTMSLEE 424

Query:   452 FANKAAQLGILTLQETIDIFLHFTAHNKPHLSYPVKARAGLKPQRSVFFVRLTSLFPFPR 511
             FAN  AQ GIL+ QETID+FLHFTA  KP L +P ++RAGLK Q    F          R
Sbjct:   425 FANGVAQTGILSSQETIDMFLHFTAKMKPSLGFPTRSRAGLKTQVCHRFQSCAYRSNQWR 484

Query:   512 YL-YCDDIQLEAD 523
             Y   CD IQ   D
Sbjct:   485 YRGRCDSIQFSVD 497
GO:0005575 "cellular_component" evidence=ND
GO:0003674 "molecular_function" evidence=ND
GO:0022008 "neurogenesis" evidence=IMP
MGI|MGI:2385155 Btbd3 "BTB (POZ) domain containing 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
MGI|MGI:3026623 Btbd6 "BTB (POZ) domain containing 6" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030829-65 btbd6b "BTB (POZ) domain containing 6b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q96KE9 BTBD6 "BTB/POZ domain-containing protein 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080218-26 btbd6a "BTB (POZ) domain containing 6a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BX70 BTBD2 "BTB/POZ domain-containing protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1N4P1 LOC533435 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1933765 Btbd1 "BTB (POZ) domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1310962 Btbd1 "BTB (POZ) domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P58545BTBD3_MOUSENo assigned EC number0.68620.43260.5733yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query705
pfam00651101 pfam00651, BTB, BTB/POZ domain 2e-22
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 2e-21
pfam00651101 pfam00651, BTB, BTB/POZ domain 1e-17
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 2e-17
smart00875101 smart00875, BACK, BTB And C-terminal Kelch 3e-11
smart00875101 smart00875, BACK, BTB And C-terminal Kelch 3e-11
PHA03098534 PHA03098, PHA03098, kelch-like protein; Provisiona 2e-05
pfam07707101 pfam07707, BACK, BTB And C-terminal Kelch 6e-05
pfam07707101 pfam07707, BACK, BTB And C-terminal Kelch 6e-05
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information 
 Score = 91.9 bits (229), Expect = 2e-22
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 7/105 (6%)

Query: 234 AMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEP 293
            +  N  + DV  VVG     +   AHK VLA  S  F A+F G     + EI + DV P
Sbjct: 3   ELRENGELCDVTLVVG----DKEFHAHKAVLAACSPYFKALFTGNK---EVEITLEDVSP 55

Query: 294 SAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYL 338
             F  LL+++Y   +++  + V   L +A K  +P L   C  +L
Sbjct: 56  EDFEALLEFIYTGKLEITEENVDDLLALADKLQIPALIDKCEEFL 100

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|197943 smart00875, BACK, BTB And C-terminal Kelch Back     alignment and domain information
>gnl|CDD|197943 smart00875, BACK, BTB And C-terminal Kelch Back     alignment and domain information
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional Back     alignment and domain information
>gnl|CDD|149006 pfam07707, BACK, BTB And C-terminal Kelch Back     alignment and domain information
>gnl|CDD|149006 pfam07707, BACK, BTB And C-terminal Kelch Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 705
KOG4441|consensus571 100.0
PHA02713557 hypothetical protein; Provisional 100.0
KOG2075|consensus521 100.0
PHA03098534 kelch-like protein; Provisional 100.0
PHA02790480 Kelch-like protein; Provisional 100.0
KOG4350|consensus 620 100.0
KOG2075|consensus 521 99.94
KOG0783|consensus1267 99.94
KOG4350|consensus 620 99.93
PHA03098 534 kelch-like protein; Provisional 99.9
KOG4441|consensus 571 99.9
PHA02713 557 hypothetical protein; Provisional 99.87
PHA02790 480 Kelch-like protein; Provisional 99.84
KOG4591|consensus280 99.81
KOG4682|consensus488 99.8
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 99.75
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.73
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 99.68
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 99.65
KOG0783|consensus 1267 99.63
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.57
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 99.52
KOG0511|consensus516 99.52
KOG4591|consensus280 99.51
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.51
KOG2838|consensus401 99.49
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.45
KOG4682|consensus 488 99.02
KOG0511|consensus516 98.99
KOG2838|consensus401 98.83
KOG2716|consensus230 97.62
KOG2716|consensus230 97.52
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 97.24
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 97.06
KOG3473|consensus112 97.06
KOG1987|consensus297 97.03
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 96.86
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 96.76
KOG1987|consensus297 96.57
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 95.46
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 95.41
KOG1724|consensus162 95.15
KOG2714|consensus465 94.77
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 94.58
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 94.28
KOG3473|consensus112 94.09
KOG2714|consensus465 93.86
KOG1724|consensus162 93.83
KOG1665|consensus302 92.67
KOG2715|consensus210 90.27
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 89.5
KOG1778|consensus319 89.2
KOG1665|consensus302 88.81
KOG2715|consensus210 86.12
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 84.7
KOG1778|consensus319 80.31
>KOG4441|consensus Back     alignment and domain information 
Probab=100.00  E-value=2e-40  Score=369.12  Aligned_cols=303  Identities=23%  Similarity=0.333  Sum_probs=267.0

Q ss_pred             CCCCCCChhhHHHHHHHHHcCCCCccEEEEeCCCCCceeEeeehhhhhccCHHHHHhhcCCCCCCc-ceEEcCCCCHHHH
Q psy11551        218 DPNWQASKPTVRERNAAMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENK-EEIEVPDVEPSAF  296 (705)
Q Consensus       218 ~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~~~~aHk~iLaa~S~yF~~mf~~~~~e~~-~~i~l~~v~~~~f  296 (705)
                      .+....+...+.+.++.++..+.+|||++.+++    ++|+|||.||||+|+||++||+++++|+. .+|++.++++.++
T Consensus        13 ~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~----~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l   88 (571)
T KOG4441|consen   13 EFTDPSHSKFLLQGLNELREEGLLCDVTLLVGD----REFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETL   88 (571)
T ss_pred             ccccHHHHHHHHHHHHHHHHhCCCceEEEEECC----eeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHH
Confidence            455567899999999999999999999999999    99999999999999999999999999999 9999999999999


Q ss_pred             HHHHHhHccCCccCChhhHHHHHHHHhhcChhHHHHHHHHHHHhcCChhhHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Q psy11551        297 LTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQAEM  376 (705)
Q Consensus       297 ~~lL~yiYt~~~~i~~~~v~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~  376 (705)
                      +.+++|+||+++.++.+|+.+++.+|++||++.+.+.|++||.++++++||+.+..+|+.|++.+|.+.+..|+.+||.+
T Consensus        89 ~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~  168 (571)
T KOG4441|consen   89 ELLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAE  168 (571)
T ss_pred             HHHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCcccccCCHHHHHhccccCCccc-ChHHHHHHHHHHHHhhccccCCCCChhhhHHhHhhhhcccccCCCCHHHHHHh
Q psy11551        377 ALKSEGFVDIDMSTLESVFARETLNC-KEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANK  455 (705)
Q Consensus       377 v~~~~~f~~L~~~~l~~ll~~~~l~v-~E~~vf~av~~W~~~~~~~~~~~~~~~~r~~~~~~ll~~vRf~~m~~~~l~~~  455 (705)
                      +.++++|+.|+.+.+..+|++|.|++ +|.+||+++++|++++         .+.|+.+++.++.+|||++|++.+|.+.
T Consensus       169 v~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d---------~~~R~~~~~~ll~~vr~~ll~~~~l~~~  239 (571)
T KOG4441|consen  169 VSKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHD---------FEEREEHLPALLEAVRLPLLPPQFLVEI  239 (571)
T ss_pred             HhccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcC---------HhhHHHHHHHHHHhcCccCCCHHHHHHH
Confidence            99999999999999999999999999 7999999999999997         6779999999999999999999999999


Q ss_pred             hhhcCCCCch-HHHHH-----HHhhccCCCCCCCCC-CCCCCCCC-------C-----cccccccccccCCCCCCC---c
Q psy11551        456 AAQLGILTLQ-ETIDI-----FLHFTAHNKPHLSYP-VKARAGLK-------P-----QRSVFFVRLTSLFPFPRY---L  513 (705)
Q Consensus       456 v~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~-~~pr~~~~-------~-----~~~~~~~~~~~~~~~~~y---~  513 (705)
                      +...++++.+ +|.+.     .+|..|..++.++.+ ++||++..       +     +.+..+.+||+.++.|..   +
T Consensus       240 v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m  319 (571)
T KOG4441|consen  240 VESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM  319 (571)
T ss_pred             HhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC
Confidence            9999988865 44443     377888888766654 88995322       1     223455588999988887   4


Q ss_pred             cccceeeccchhhhHHHhhc
Q psy11551        514 YCDDIQLEADTVLATLYVAK  533 (705)
Q Consensus       514 y~~~~~~~~~~~~~~l~~A~  533 (705)
                      ........+..+...++++.
T Consensus       320 ~~~r~~~~~~~~~~~lYv~G  339 (571)
T KOG4441|consen  320 PSPRCRVGVAVLNGKLYVVG  339 (571)
T ss_pred             CcccccccEEEECCEEEEEc
Confidence            44444444444444444443

>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG2075|consensus Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>KOG4350|consensus Back     alignment and domain information
>KOG2075|consensus Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>KOG4350|consensus Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4441|consensus Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>KOG4591|consensus Back     alignment and domain information
>KOG4682|consensus Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>KOG0511|consensus Back     alignment and domain information
>KOG4591|consensus Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>KOG2838|consensus Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG4682|consensus Back     alignment and domain information
>KOG0511|consensus Back     alignment and domain information
>KOG2838|consensus Back     alignment and domain information
>KOG2716|consensus Back     alignment and domain information
>KOG2716|consensus Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG3473|consensus Back     alignment and domain information
>KOG1987|consensus Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>KOG1987|consensus Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG1724|consensus Back     alignment and domain information
>KOG2714|consensus Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>KOG3473|consensus Back     alignment and domain information
>KOG2714|consensus Back     alignment and domain information
>KOG1724|consensus Back     alignment and domain information
>KOG1665|consensus Back     alignment and domain information
>KOG2715|consensus Back     alignment and domain information
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1778|consensus Back     alignment and domain information
>KOG1665|consensus Back     alignment and domain information
>KOG2715|consensus Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG1778|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query705
2vkp_A109 Crystal Structure Of Btb Domain From Btbd6 Length = 1e-41
2vkp_A109 Crystal Structure Of Btb Domain From Btbd6 Length = 2e-11
3hqi_A312 Structures Of Spop-Substrate Complexes: Insights In 5e-07
4ap2_A297 Crystal Structure Of The Human Klhl11-cul3 Complex 2e-06
4eoz_A145 Crystal Structure Of The Spop Btb Domain Complexed 3e-06
1r28_A127 Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) B 6e-06
3e4u_A130 Crystal Structure Of The Wild-Type Human Bcl6 BtbPO 1e-05
3i3n_A279 Crystal Structure Of The Btb-Back Domains Of Human 1e-05
3htm_A172 Structures Of Spop-Substrate Complexes: Insights In 7e-04
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6 Length = 109 Back     alignment and structure 
Iteration: 1

 Score =  168 bits (425), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/109 (75%), Positives = 90/109 (82%)
Query: 234 AMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEP 293
           + FNNEL ADV FVVG  G T+T+PAHKYVLA GSSVFYA FYG LAE K EI +PDVEP
Sbjct: 1   SXFNNELXADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAXFYGDLAEVKSEIHIPDVEP 60
Query: 294 SAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSL 342
           +AFL LLKY Y D+I LEADTVLATLY AKKYIVP LA+ACV +LETSL
Sbjct: 61  AAFLILLKYXYSDEIDLEADTVLATLYAAKKYIVPALAKACVNFLETSL 109
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6 Length = 109 Back     alignment and structure
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: SpopmathxBTB3-Box-Pucsbc1 Length = 312 Back     alignment and structure
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 297 Back     alignment and structure
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 145 Back     alignment and structure
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb Domain To 2.2 Angstrom Length = 127 Back     alignment and structure
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ DOMAIN Length = 130 Back     alignment and structure
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11 Length = 279 Back     alignment and structure
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopbtb3-Box Length = 172 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query705
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 1e-44
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 7e-33
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 8e-09
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 1e-31
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 1e-22
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 9e-07
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 6e-29
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 3e-18
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 8e-11
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 1e-28
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 5e-21
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 2e-28
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 1e-19
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 2e-06
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 9e-27
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 4e-15
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 1e-10
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 1e-19
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 6e-17
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 1e-19
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 3e-15
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 1e-19
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 2e-15
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 6e-19
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 9e-15
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 2e-18
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 8e-14
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 5e-18
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 3e-14
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 5e-18
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 1e-13
3b84_A119 Zinc finger and BTB domain-containing protein 48; 9e-18
3b84_A119 Zinc finger and BTB domain-containing protein 48; 6e-15
2vpk_A116 Myoneurin; transcription regulation, transcription 3e-17
2vpk_A116 Myoneurin; transcription regulation, transcription 2e-14
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 6e-17
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 2e-14
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 7e-16
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 5e-13
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 5e-15
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 2e-12
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 7e-14
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 6e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-12
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 7e-10
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 2e-07
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
 Score =  154 bits (391), Expect = 1e-44
 Identities = 85/109 (77%), Positives = 94/109 (86%)

Query: 234 AMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENKEEIEVPDVEP 293
           +MFNNELMADV FVVG  G T+T+PAHKYVLA GSSVFYAMFYG LAE K EI +PDVEP
Sbjct: 1   SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEP 60

Query: 294 SAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSL 342
           +AFL LLKY+Y D+I LEADTVLATLY AKKYIVP LA+ACV +LETSL
Sbjct: 61  AAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKACVNFLETSL 109
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query705
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 100.0
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 100.0
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.96
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.94
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.93
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.93
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.92
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.9
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.9
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.89
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.88
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.88
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.88
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.88
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.88
2vpk_A116 Myoneurin; transcription regulation, transcription 99.87
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.87
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.86
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.86
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.86
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.85
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.83
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.82
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.82
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.81
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.75
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 99.75
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.73
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.72
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.72
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.71
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.71
2vpk_A116 Myoneurin; transcription regulation, transcription 99.71
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.7
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.69
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.68
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.65
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 99.65
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.65
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.64
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.62
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.59
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.41
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.2
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.12
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.05
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.94
4ajy_C97 Transcription elongation factor B polypeptide 1; E 98.86
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 98.71
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.65
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.46
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.39
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.38
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 98.01
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.95
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 97.88
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 97.86
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 97.84
2fnj_C96 Transcription elongation factor B polypeptide 1; b 97.8
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.01
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 96.82
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 96.44
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 94.37
3kvt_A115 Potassium channel protein SHAW; tetramerization do 94.34
3kvt_A115 Potassium channel protein SHAW; tetramerization do 94.1
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 93.26
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 92.65
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 91.72
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 91.71
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 91.68
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 90.01
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 89.82
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
Probab=100.00  E-value=5.2e-43  Score=356.08  Aligned_cols=240  Identities=16%  Similarity=0.269  Sum_probs=207.9

Q ss_pred             CCCCCCChhhHHHHHHHHHcCCCCccEEEEeCCCCCceeEeeehhhhhccCHHHHHhhcCCCC--CCc-ceEEcCCCCHH
Q psy11551        218 DPNWQASKPTVRERNAAMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLA--ENK-EEIEVPDVEPS  294 (705)
Q Consensus       218 ~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~~~~aHk~iLaa~S~yF~~mf~~~~~--e~~-~~i~l~~v~~~  294 (705)
                      ...+..+...+.++++.+++++.+|||+|.++|    +.|+|||.||+++|+||++||.+++.  ++. .+|.+++++++
T Consensus         8 ~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~----~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~   83 (256)
T 3hve_A            8 AVSDPQHAARLLRALSSFREESRFCDAHLVLDG----EEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVM   83 (256)
T ss_dssp             --CCTTTHHHHHHHHHTCCC--CCCCEEEEETT----EEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHH
T ss_pred             ccCChHHHHHHHHHHHHHHhcCCCcceEEEECC----EEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHH
Confidence            345567899999999999999999999999998    99999999999999999999999887  455 89999999999


Q ss_pred             HHHHHHHhHccCCccCChhhHHHHHHHHhhcChhHHHHHHHHHHHhcCChhhHHHHHHHHhhcCChHHHHHHHHHHHHHH
Q psy11551        295 AFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETSLTAKNACLLLSQSRLFEEPDLMQRCWEVIDAQA  374 (705)
Q Consensus       295 ~f~~lL~yiYt~~~~i~~~~v~~ll~~A~~~~l~~L~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~  374 (705)
                      +|+.+++|+|||++.++.+++.+++.+|++|+++.|++.|+++|.+.++++||+.++.+|..|++..|.+.|.+||.+||
T Consensus        84 ~f~~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f  163 (256)
T 3hve_A           84 VMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHF  163 (256)
T ss_dssp             HHHHHHHHHHHSCCCCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccCCCCcccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCcccccCCHHHHHhccccCCccc-ChHHHHHHHHHHHHhhccccCCCCChhhhHHhHhhhhcccccCCCCHHHHH
Q psy11551        375 EMALKSEGFVDIDMSTLESVFARETLNC-KEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFA  453 (705)
Q Consensus       375 ~~v~~~~~f~~L~~~~l~~ll~~~~l~v-~E~~vf~av~~W~~~~~~~~~~~~~~~~r~~~~~~ll~~vRf~~m~~~~l~  453 (705)
                      .++..+++|.+|+.+.+..+|++|+|+| +|.+||+++++|++++         +++|.++++.+|++|||++|++++|.
T Consensus       164 ~~v~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~W~~~~---------~~~R~~~~~~ll~~VRf~~l~~~~l~  234 (256)
T 3hve_A          164 RDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHD---------TEIRKVHMKDVMSALWVSGLDSSYLR  234 (256)
T ss_dssp             HHHTTCHHHHSSCHHHHHHHHHCC-------CTTHHHHTTTCCC-----------CCSTTTHHHHHHHHHHHTTCC-CHH
T ss_pred             HHHhCCcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHHHHHHcC---------HHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence            9999999999999999999999999999 7999999999999986         67889999999999999999999999


Q ss_pred             HhhhhcCCCCch--HHHHH
Q psy11551        454 NKAAQLGILTLQ--ETIDI  470 (705)
Q Consensus       454 ~~v~~~~~~~~~--~~~~~  470 (705)
                      +.+.++++++..  +|.++
T Consensus       235 ~~v~~~~l~~~~~~~c~~l  253 (256)
T 3hve_A          235 EQMLNEPLVREIVKECSNI  253 (256)
T ss_dssp             HHHHTSTTHHHHHCC----
T ss_pred             HHHhcChHHHhhHHHHHHH
Confidence            999999999876  45543
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 705
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 3e-17
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 3e-12
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 0.002
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 2e-15
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 4e-11
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 2e-04
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.3 bits (187), Expect = 3e-17
 Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 5/108 (4%)

Query: 235 MFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAEN-KEEIEVPDVEP 293
           + + +++ DV  VV      +   AHK VL   S +FY++F   L  N       P++ P
Sbjct: 19  LRSRDILTDVVIVVSR----EQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINP 74

Query: 294 SAFLTLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLETS 341
             F  LL ++Y   + L    ++A +  A    + H+   C  +++ S
Sbjct: 75  EGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 122
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query705
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.9
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.89
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.73
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.71
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.93
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.72
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 96.99
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 96.71
d3kvta_103 akv3.1 voltage-gated potassium channel {California 96.26
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 96.05
d3kvta_103 akv3.1 voltage-gated potassium channel {California 95.93
d1t1da_100 Shaker potassium channel {California sea hare (Apl 95.32
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 95.15
d1t1da_100 Shaker potassium channel {California sea hare (Apl 94.45
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 93.9
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 93.28
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 90.98
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 88.5
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 88.38
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 84.7
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.9e-24  Score=185.68  Aligned_cols=118  Identities=23%  Similarity=0.422  Sum_probs=111.2

Q ss_pred             CCCCCChhhHHHHHHHHHcCCCCccEEEEeCCCCCceeEeeehhhhhccCHHHHHhhcCCCCCCc-ceEEcCCCCHHHHH
Q psy11551        219 PNWQASKPTVRERNAAMFNNELMADVKFVVGSSGHTQTIPAHKYVLATGSSVFYAMFYGGLAENK-EEIEVPDVEPSAFL  297 (705)
Q Consensus       219 ~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~~~~aHk~iLaa~S~yF~~mf~~~~~e~~-~~i~l~~v~~~~f~  297 (705)
                      ..|+.|.+.+...++.+++++.+|||++.++|    ++|+|||+||+++|+||++||.+++.++. ..+.++++++++|+
T Consensus         3 ~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~----~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~   78 (122)
T d1r29a_           3 IQFTRHASDVLLNLNRLRSRDILTDVVIVVSR----EQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFN   78 (122)
T ss_dssp             CCCTTHHHHHHHHHHHHHHTTCSCCEEEEETT----EEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHH
T ss_pred             cccchHHHHHHHHHHHHHhcCCCeEEEEEECC----EEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccCHHHHH
Confidence            35668999999999999999999999999998    99999999999999999999999998887 55666899999999


Q ss_pred             HHHHhHccCCccCChhhHHHHHHHHhhcChhHHHHHHHHHHHh
Q psy11551        298 TLLKYLYCDDIQLEADTVLATLYVAKKYIVPHLARACVTYLET  340 (705)
Q Consensus       298 ~lL~yiYt~~~~i~~~~v~~ll~~A~~~~l~~L~~~c~~~l~~  340 (705)
                      .+|+|+|||++.++.+++.+++.+|++|+++.|++.|.+||..
T Consensus        79 ~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L~~  121 (122)
T d1r29a_          79 ILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA  121 (122)
T ss_dssp             HHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHhhhcCCeecCchhhHHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999875
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure