Psyllid ID: psy11558

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70----
Protein Sequence
MYLSLLRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKYIF
Secondary Structure (PSIPRED)
cEEEEEEEEccccccccccEEEEccccEEEEEcccccEEEEEEccccccEEEEEcccccccccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccccccccEEEEccccEEEEEccccEEEEEEEccccccEEEEEEccccccccccccEEEEEEc
Coil and Loop (DISEMBL)
MYLSLLRLTMaaeddtlgpifikeppnridfsnttgaqvectargspnpeiiwirsdgtavgdvpglrkykyif
Flexible Loop (DISEMBL)
MYLSLLRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVectargspnpeiiwirsdgtavgdvpglrkykyif
Low Complexity Region (SEG)
MYLSLLRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKYIF
Disordered region (IsUnstruct)
****LLRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARG*PNPEIIWIRSDGTAVGDVPGLRKYKYI*
Disordered Region (DISOPRED)
MYLSLL*LTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKYIF
Disordered Region (DISEMBL)
MYLSLLRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKYIF
Disordered Region (DISPRO)
MYLSLLRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKYIF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYLSLLRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKYIF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	74	2.2.26 [Sep-21-2011]
Q9VS29	2074	Down syndrome cell adhesi	no	N/A	0.621	0.022	0.461	4e-11
Q96JA1	1093	Leucine-rich repeats and	yes	N/A	0.662	0.044	0.415	0.0008

>sp|Q9VS29|DSCL_DROME Down syndrome cell adhesion molecule-like protein Dscam2 OS=Drosophila melanogaster GN=Dscam2 PE=2 SV=3

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 40/52 (76%)

Query: 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRK 69
          GP F+ EPP R++FSN++G  ++C+A GSP P + W+ +DG+AV ++ G+R+
Sbjct: 30 GPGFVMEPPGRVEFSNSSGGWLDCSASGSPQPTVDWVHADGSAVTEIHGVRR 81

Cell adhesion molecule.
Drosophila melanogaster (taxid: 7227)

>sp|Q96JA1|LRIG1_HUMAN Leucine-rich repeats and immunoglobulin-like domains protein 1 OS=Homo sapiens GN=LRIG1 PE=1 SV=2

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYK 71
           P F K P + I    TT A++EC A G PNP+I W +  GT   D P  R+ +
Sbjct: 599 PSFTKTPHD-ITIRTTTMARLECAATGHPNPQIAWQKDGGT---DFPAARERR 647

Act as a feedback negative regulator of signaling by receptor tyrosine kinases, through a mechanism that involves enhancement of receptor ubiquitination and accelerated intracellular degradation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
73765582	1639	Down Syndrome adhesion molecule splice v	0.891	0.040	0.731	2e-23
167466192	1943	Down syndrome cell adhesion molecule pre	0.891	0.033	0.731	3e-23
242024848	2018	down syndrome cell adhesion molecule, pu	0.932	0.034	0.685	3e-22
328698595	3525	PREDICTED: hemicentin-2-like [Acyrthosip	0.824	0.017	0.774	9e-22
307166759	463	Down syndrome cell adhesion molecule [Ca	0.810	0.129	0.733	1e-21
340712882	1966	PREDICTED: Down syndrome cell adhesion m	0.905	0.034	0.681	2e-21
380011964	2109	PREDICTED: Down syndrome cell adhesion m	0.932	0.032	0.647	2e-21
332021241	569	Down syndrome cell adhesion molecule-lik	0.864	0.112	0.707	9e-21
350419622	1975	PREDICTED: Down syndrome cell adhesion m	0.770	0.028	0.724	2e-20
194863848	1317	GG10759 [Drosophila erecta] gi|190662511	0.824	0.046	0.703	2e-19

>gi|73765582|gb|AAZ85125.1| Down Syndrome adhesion molecule splice variant 3.12.3.1 [Tribolium castaneum]

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/67 (73%), Positives = 60/67 (89%)

Query: 3  LSLLRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG 62
          ++LL L  +AEDDT GP+F++EPPNRIDFSNTTGA VEC+A G+P P+IIW+RSDGTAVG
Sbjct: 7  VTLLVLGASAEDDTSGPVFVREPPNRIDFSNTTGAVVECSAHGNPTPDIIWVRSDGTAVG 66

Query: 63 DVPGLRK 69
          DVPGLR+
Sbjct: 67 DVPGLRQ 73

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|167466192|ref|NP_001107841.1| Down syndrome cell adhesion molecule precursor [Tribolium castaneum] gi|270014311|gb|EFA10759.1| down syndrome cell adhesion molecule [Tribolium castaneum]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 60/67 (89%)

Query: 3  LSLLRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG 62
          ++LL L  +AEDDT GP+F++EPPNRIDFSNTTGA VEC+A G+P P+IIW+RSDGTAVG
Sbjct: 7  VTLLVLGASAEDDTSGPVFVREPPNRIDFSNTTGAVVECSAHGNPTPDIIWVRSDGTAVG 66

Query: 63 DVPGLRK 69
          DVPGLR+
Sbjct: 67 DVPGLRQ 73

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242024848|ref|XP_002432838.1| down syndrome cell adhesion molecule, putative [Pediculus humanus corporis] gi|212518347|gb|EEB20100.1| down syndrome cell adhesion molecule, putative [Pediculus humanus corporis]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 48/70 (68%), Positives = 62/70 (88%), Gaps = 1/70 (1%)

Query: 1   MYLSLLRLTMA-AEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT 59
           ++++LL  ++   +D T+GPI IKEPPNR+DFSNTTGA+VEC+ARG+P PEIIW+RSDGT
Sbjct: 67  IFINLLIFSIGNCDDSTVGPILIKEPPNRVDFSNTTGAEVECSARGNPTPEIIWVRSDGT 126

Query: 60  AVGDVPGLRK 69
           AVGDVPGLR+
Sbjct: 127 AVGDVPGLRQ 136

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328698595|ref|XP_003240678.1| PREDICTED: hemicentin-2-like [Acyrthosiphon pisum]

 Score =  107 bits (267), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 55/62 (88%)

Query: 10 MAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRK 69
          +  +D T+GP+FIKEP NR+DFSNTTGA VECTARGSP PEIIWIR+DGTAVGDVPGLR+
Sbjct: 20 LCEDDTTMGPMFIKEPENRVDFSNTTGAIVECTARGSPRPEIIWIRADGTAVGDVPGLRQ 79

Query: 70 YK 71
           K
Sbjct: 80 VK 81

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307166759|gb|EFN60721.1| Down syndrome cell adhesion molecule [Camponotus floridanus]

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/60 (73%), Positives = 55/60 (91%)

Query: 10 MAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRK 69
          ++AED ++GP+F+KEPPNR+DFSN TGA VEC ARG+P P+IIW+RSDGTAVGDVPGLR+
Sbjct: 32 VSAEDVSMGPVFVKEPPNRVDFSNGTGAVVECQARGNPQPDIIWVRSDGTAVGDVPGLRQ 91

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712882|ref|XP_003394982.1| PREDICTED: Down syndrome cell adhesion molecule-like protein CG42256-like [Bombus terrestris]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/69 (68%), Positives = 60/69 (86%), Gaps = 2/69 (2%)

Query: 3  LSLLRLT--MAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTA 60
          L+LL LT    AED+++GP+F+KEPPNR+DFSN TGA VEC ARG+P P+IIW+R+DG+A
Sbjct: 4  LALLALTNVACAEDESMGPVFVKEPPNRVDFSNGTGAVVECQARGNPQPDIIWVRADGSA 63

Query: 61 VGDVPGLRK 69
          VGDVPGLR+
Sbjct: 64 VGDVPGLRQ 72

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011964|ref|XP_003690061.1| PREDICTED: Down syndrome cell adhesion molecule-like protein Dscam2-like [Apis florea]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/71 (64%), Positives = 61/71 (85%), Gaps = 2/71 (2%)

Query: 1  MYLSLLRLT--MAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
          + L++L LT    AED+++GP+F+KEPPNR+DFSN TGA VEC ARG+P P+IIW+R+DG
Sbjct: 20 LLLAVLALTNVACAEDESMGPVFVKEPPNRVDFSNGTGAVVECQARGNPQPDIIWVRADG 79

Query: 59 TAVGDVPGLRK 69
          +AVGDVPGLR+
Sbjct: 80 SAVGDVPGLRQ 90

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021241|gb|EGI61626.1| Down syndrome cell adhesion molecule-like protein [Acromyrmex echinatior]

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 46/65 (70%), Positives = 56/65 (86%), Gaps = 1/65 (1%)

Query: 6  LRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG-TAVGDV 64
          L   ++AED ++GP+F+KEPPNRIDFSN TGA VEC ARG+P P+IIW+RSDG TAVGDV
Sbjct: 28 LTTVISAEDASMGPVFVKEPPNRIDFSNGTGAVVECQARGNPQPDIIWVRSDGNTAVGDV 87

Query: 65 PGLRK 69
          PGLR+
Sbjct: 88 PGLRQ 92

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419622|ref|XP_003492247.1| PREDICTED: Down syndrome cell adhesion molecule-like protein CG42256-like [Bombus impatiens]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 42/58 (72%), Positives = 54/58 (93%)

Query: 12 AEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRK 69
          AED+++GP+F+KEPPNR+DFSN TGA VEC ARG+P P+IIW+R+DG+AVGDVPGLR+
Sbjct: 15 AEDESMGPVFVKEPPNRVDFSNGTGAVVECQARGNPQPDIIWVRADGSAVGDVPGLRQ 72

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194863848|ref|XP_001970644.1| GG10759 [Drosophila erecta] gi|190662511|gb|EDV59703.1| GG10759 [Drosophila erecta]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/64 (70%), Positives = 54/64 (84%), Gaps = 3/64 (4%)

Query: 9  TMAA---EDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP 65
          T+AA   + D  GP+F+KEP NRIDFSN+TGA++EC A G+P PEIIWIRSDGTAVGDVP
Sbjct: 24 TLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP 83

Query: 66 GLRK 69
          GLR+
Sbjct: 84 GLRQ 87

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
FB|FBgn0033159	2037	Dscam "Down syndrome cell adhe	0.824	0.029	0.703	1.8e-18
FB|FBgn0261046	2046	Dscam3 "Down syndrome cell adh	0.932	0.033	0.449	1.9e-09
FB|FBgn0263219	1918	Dscam4 "Down syndrome cell adh	0.527	0.020	0.538	2.4e-07
UNIPROTKB|C9JMQ2	116	CNTN4 "Contactin-4" [Homo sapi	0.662	0.422	0.415	0.00057

FB|FBgn0033159 Dscam "Down syndrome cell adhesion molecule" [Drosophila melanogaster (taxid:7227)]

 Score = 239 (89.2 bits), Expect = 1.8e-18, P = 1.8e-18
 Identities = 45/64 (70%), Positives = 54/64 (84%)

Query:     9 TMAA---EDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP 65
             T+AA   + D  GP+F+KEP NRIDFSN+TGA++EC A G+P PEIIWIRSDGTAVGDVP
Sbjct:    26 TLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP 85

Query:    66 GLRK 69
             GLR+
Sbjct:    86 GLRQ 89

GO:0005887 "integral to plasma membrane" evidence=ISM;ISS

GO:0007411 "axon guidance" evidence=IGI;IMP;TAS

GO:0008046 "axon guidance receptor activity" evidence=IMP;NAS

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0051635 "bacterial cell surface binding" evidence=IDA

GO:0048666 "neuron development" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=IMP;IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0021551 "central nervous system morphogenesis" evidence=IMP

GO:0048846 "axon extension involved in axon guidance" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

FB|FBgn0261046 Dscam3 "Down syndrome cell adhesion molecule 3" [Drosophila melanogaster (taxid:7227)]

 Score = 154 (59.3 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 31/69 (44%), Positives = 40/69 (57%)

Query:     1 MYLSLLRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTA 60
             + L++L   + A      P F+ EP  R+ F N TGAQV CTA GSP P + W+  DG+ 
Sbjct:    20 LLLAVLATPLLATSGLRVPTFLLEPAPRLLFGNDTGAQVTCTAHGSPPPLVTWVLRDGSL 79

Query:    61 VGDVPGLRK 69
                VPGLRK
Sbjct:    80 ATQVPGLRK 88

GO:0007155 "cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0007156 "homophilic cell adhesion" evidence=IC

GO:0042802 "identical protein binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=ISM

FB|FBgn0263219 Dscam4 "Down syndrome cell adhesion molecule 4" [Drosophila melanogaster (taxid:7227)]

 Score = 134 (52.2 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 21/39 (53%), Positives = 29/39 (74%)

Query:    15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIW 53
             D  GPIF+ EPP+R++FSN +G  +EC+  GSP PE+ W
Sbjct:    28 DLQGPIFLHEPPHRVEFSNNSGGLIECSGHGSPPPEVEW 66

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0007155 "cell adhesion" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

UNIPROTKB|C9JMQ2 CNTN4 "Contactin-4" [Homo sapiens (taxid:9606)]

 Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
 Identities = 22/53 (41%), Positives = 30/53 (56%)

Query:    12 AEDDTL-GPIFIKEP-PNRIDF-SNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
             A+D TL GPIFI+EP P      S     ++ C  +G+P P I W + +GT V
Sbjct:    18 ADDSTLHGPIFIQEPSPVMFPLDSEEKKVKLNCEVKGNPKPHIRW-KLNGTDV 69


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.140   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       74        74   0.00091  102 3  11 22  0.38    29
                                                     29  0.46    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  530 (56 KB)
  Total size of DFA:  98 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:05
  No. of threads or processors used:  24
  Search cpu time:  8.09u 0.09s 8.18t   Elapsed:  00:00:18
  Total cpu time:  8.09u 0.09s 8.18t   Elapsed:  00:00:23
  Start:  Thu Aug 15 13:13:09 2013   End:  Thu Aug 15 13:13:32 2013

GO:0007420 "brain development" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	74
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	6e-04
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	0.001
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	0.002
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	0.004

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 34.9 bits (80), Expect = 6e-04
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 18 GPIFIKEPPNRIDFSNTTGAQV--ECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKYI 73
          GP+F++EP + I  +++   +V   C ARG+P P   W+R +GT + D     +Y  I
Sbjct: 1  GPVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLR-NGTEI-DTESDYRYSLI 56

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 33.6 bits (77), Expect = 0.001
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 18 GPIFIKEPPNRIDFSNTTGAQV--ECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
          GP+F ++P + I    +   +V   C ARGSP P   W   +GT + D P  R
Sbjct: 1  GPVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRW-LMNGTEIDDEPDSR 52

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 33.0 bits (75), Expect = 0.002
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)

Query: 37 AQVECTARGSPNPEIIWIRSDGTAVGDVPGLRK 69
          A++EC A G P P+I W +  GT   D P  R+
Sbjct: 1  ARLECAATGHPTPQIAWQKDGGT---DFPAARE 30

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 32.5 bits (74), Expect = 0.004
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 24 EPPNRIDFSNTTGAQVECTARGSPNPEIIWI 54
          + PN         A + CTA GSP P++ WI
Sbjct: 5  DGPNATVVYEGGTATIRCTAEGSPLPKVEWI 35

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	74
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.28
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.2
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.15
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.11
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.11
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.06
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.04
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.03
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.01
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.0
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	98.99
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.99
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	98.96
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	98.95
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	98.91
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	98.87
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.84
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.83
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	98.8
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	98.79
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	98.79
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	98.76
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.7
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	98.69
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.68
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.68
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.68
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.68
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	98.68
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.68
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	98.67
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	98.65
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.65
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	98.65
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.63
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	98.62
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	98.62
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	98.6
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	98.6
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	98.59
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	98.58
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.58
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	98.55
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	98.54
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.54
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	98.53
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	98.53
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.51
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	98.51
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	98.5
KOG3513|consensus	1051		98.49
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.49
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	98.48
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	98.45
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.44
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	98.44
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.42
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.42
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.42
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	98.4
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.39
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.39
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.38
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	98.38
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.36
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	98.35
KOG3513|consensus	1051		98.35
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	98.34
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.34
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.34
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.33
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.33
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.33
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.29
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	98.29
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.26
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	98.25
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.25
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.24
KOG4222|consensus	1281		98.21
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.18
KOG4194|consensus	873		98.16
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.1
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.09
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.07
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.04
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	97.94
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	97.94
KOG4221|consensus	1381		97.87
PHA02785	326	IL-beta-binding protein; Provisional	97.85
smart00408	63	IGc2 Immunoglobulin C-2 Type.	97.84
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	97.8
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	97.79
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	97.77
PHA02826	227	IL-1 receptor-like protein; Provisional	97.73
smart00409	86	IG Immunoglobulin.	97.7
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	97.7
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	97.69
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	97.6
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	97.6
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	97.59
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	97.59
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	97.55
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	97.53
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.5
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	97.47
PF00047	64	ig: Immunoglobulin domain The Prosite family only	97.44
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.4
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.39
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.38
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	97.37
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.36
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.31
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	97.3
KOG4221|consensus	1381		97.29
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.28
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	97.28
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	97.18
KOG4222|consensus	1281		97.18
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.17
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.13
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	97.1
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.04
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	97.04
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	96.99
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	96.98
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	96.96
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	96.71
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	96.71
smart00407	75	IGc1 Immunoglobulin C-Type.	96.67
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	96.54
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	96.42
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	96.29
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	96.28
KOG4194|consensus	873		96.04
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	95.99
PHA02826	227	IL-1 receptor-like protein; Provisional	95.87
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	95.8
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	95.72
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	95.55
PHA02785	326	IL-beta-binding protein; Provisional	95.49
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	95.48
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	95.43
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	95.34
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	95.26
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	95.23
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	95.18
cd05770	93	IgC_beta2m Class I major histocompatibility comple	94.84
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	94.7
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	94.62
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	94.49
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	94.25
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	94.1
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	93.48
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	93.29
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	93.29
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	93.21
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	93.13
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	93.08
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	92.97
PHA03052	69	Hypothetical protein; Provisional	92.96
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	92.72
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	92.53
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	92.5
PHA02987	189	Ig domain OX-2-like protein; Provisional	92.34
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	91.91
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	91.14
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	90.59
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	90.56
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	89.9
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	89.36
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	89.3
KOG3515|consensus	741		88.9
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	88.87
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	88.42
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	88.24
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	88.21
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	88.02
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	87.94
smart00406	81	IGv Immunoglobulin V-Type.	87.56
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	86.9
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	86.48
PHA03376	221	BARF1; Provisional	85.63
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	81.44

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.28  E-value=1.6e-11  Score=74.71  Aligned_cols=46  Identities=37%  Similarity=0.905  Sum_probs=36.8

Q ss_pred             cceEEEcCCCcEEec---CCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         18 GPIFIKEPPNRIDFS---NTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~---~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      +|.|+.+|.+.+ +.   +|..++|.|.|.|+|.|+|+|++ ||.++....
T Consensus         1 ~P~f~~~p~~~~-~~~~~~g~~v~l~C~~~G~P~P~i~W~k-~g~~l~~~~   49 (94)
T cd05848           1 GPVFVQEPDDAI-FPTDSDEKKVILNCEARGNPVPTYRWLR-NGTEIDTES   49 (94)
T ss_pred             CCeeEECCCcEE-ccCCCCCCEEEEEEEeeecCCCEEEEEE-CCeECccCC
Confidence            589999976644 43   35679999999999999999996 788886443

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.20  E-value=8.5e-11  Score=71.39  Aligned_cols=47  Identities=30%  Similarity=0.637  Sum_probs=37.0

Q ss_pred             cceEEEcCCCcEEecCC---CCeEEEEEEcccCCCeEEEEeCCCeeecCCCC
Q psy11558         18 GPIFIKEPPNRIDFSNT---TGAQVECTARGSPNPEIIWIRSDGTAVGDVPG   66 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g---~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~   66 (74)
                      +|.|+++| +.+.+.+|   +.+.|.|.|.|+|.|+|+|++ ||.++....+
T Consensus         1 ~P~f~~~P-~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~-~g~~l~~~~~   50 (94)
T cd05850           1 GPVFEEQP-SSLLFPEGSPEEKVTLGCRARASPPATYRWKM-NGTEIKFAPE   50 (94)
T ss_pred             CCeeEECC-CCEEecCCCCCCeEEEEeEceeCCCCEEEEEE-CCEECccCCC
Confidence            58999985 45456655   359999999999999999996 8888764443

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.15  E-value=1.6e-10  Score=68.37  Aligned_cols=44  Identities=27%  Similarity=0.684  Sum_probs=37.7

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      +|.|++.| +++.+.+|+.++|.|.|.|+|.|+|+|++ ||..+..
T Consensus         1 ~P~i~~~p-~~~~v~~G~~~~l~C~~~g~P~p~i~W~k-~g~~l~~   44 (100)
T cd07693           1 PPRIVEHP-SDLIVSKGDPATLNCKAEGRPTPTIQWLK-NGQPLET   44 (100)
T ss_pred             CCeEEecC-ceeEEcCCCeEEEEeeCCcCCCCEEEEEE-CCEECcc
Confidence            58899886 45668889899999999999999999997 7887755

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.11  E-value=3.1e-10  Score=69.18  Aligned_cols=43  Identities=26%  Similarity=0.652  Sum_probs=34.2

Q ss_pred             cceEEEcCCCcEEecCCC---CeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         18 GPIFIKEPPNRIDFSNTT---GAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~---~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      +|.|+.+|.+. .+.++.   .+.|+|.|.|+|.|+|+|++ ||.++.
T Consensus         1 ~P~f~~~P~~~-~~~~~~~~~~v~l~C~a~G~P~P~i~W~k-~~~~i~   46 (93)
T cd05849           1 GPVFEEQPIDT-IYPEESTEGKVSVNCRARANPFPIYKWRK-NNLDID   46 (93)
T ss_pred             CCEEEECCCCE-EecCCccCCeEEEeCcCccCCCCEEEEEE-CCEEcc
Confidence            58999997654 454433   59999999999999999997 677664

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.11  E-value=1.5e-10  Score=69.53  Aligned_cols=41  Identities=37%  Similarity=0.841  Sum_probs=34.0

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCC-eEEEEeCCCeeecC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSDGTAVGD   63 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P-~I~W~~~dG~~i~~   63 (74)
                      |+++| +++.+..|+.+.|+|.|+|+|.| +|+|.+ ||.++..
T Consensus         1 f~~~P-~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k-~g~~l~~   42 (81)
T cd05749           1 FTVEP-EDLSVTANTPFNLTCQAVGPPEPVEILWWQ-GGSPLGD   42 (81)
T ss_pred             CcCCC-CceEEcCCCCEEEEEEeeeecCCeEEEEEE-CCEECCC
Confidence            45664 55678889999999999999999 799996 7888754

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.06  E-value=4.5e-10  Score=67.46  Aligned_cols=43  Identities=19%  Similarity=0.194  Sum_probs=35.4

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      +|.|+..|.+. ....|+.++|.|.|.|+|.|+|+|++ +|.++.
T Consensus         1 ~p~i~~~~~~~-~~~~G~~v~l~C~~~G~P~P~v~W~k-~~~~~~   43 (88)
T cd05851           1 PADINVKFKDT-YALKGQNVTLECFALGNPVPVIRWRK-ILEPMP   43 (88)
T ss_pred             CCceEEccccE-EEeCCCcEEEEEEecccCCCEEEEEE-CCcCCC
Confidence            58899996655 56788899999999999999999997 555543

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.04  E-value=8.8e-10  Score=66.32  Aligned_cols=44  Identities=30%  Similarity=0.587  Sum_probs=35.8

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      .|+.+|.+. .+.+|+++.|.|.|.|+|.|+|+|++ ||..+....
T Consensus         1 ~f~~~P~~~-~~~~g~~v~l~C~v~g~P~p~i~W~k-~g~~l~~~~   44 (95)
T cd05722           1 WFLSEPSDI-VAVRGGPVVLNCSAEGEPPPKIEWKK-DGVLLNLVS   44 (95)
T ss_pred             CcEECCCCe-EEcCCCCEEEeeecccCCCCEEEEEE-CCeECcccc
Confidence            377887654 56678899999999999999999996 888886543

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.03  E-value=9.7e-10  Score=67.45  Aligned_cols=45  Identities=13%  Similarity=0.349  Sum_probs=37.9

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      |.|++.| +.+.+..|+.+.|.|.+.|.|+|+|+|++ ||.+|....
T Consensus         1 p~~~~~p-~~~~v~~G~~v~l~C~~~G~p~p~v~W~k-dg~~l~~~~   45 (98)
T cd05762           1 PQIIQFP-EDMKVRAGESVELFCKVTGTQPITCTWMK-FRKQIQEGE   45 (98)
T ss_pred             CceEECC-cCEEEECCCEEEEEEEEcccCCCceEEEE-CCEEecCCC
Confidence            6788885 55567889999999999999999999986 888886544

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.01  E-value=1.7e-09  Score=64.93  Aligned_cols=44  Identities=20%  Similarity=0.537  Sum_probs=37.6

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      ++...|+.+.+.+|..+.|.|.+.|+|.|+|+|++ ||.++....
T Consensus         3 ~~~~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k-~g~~l~~~~   46 (92)
T cd05737           3 VVGGLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLK-NDQALALSD   46 (92)
T ss_pred             eeccCCceEEEeCCCcEEEEEEEEecCCCeEEEEE-CCEECccCC
Confidence            56677888888899999999999999999999997 788776544

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.00  E-value=3.1e-09  Score=62.22  Aligned_cols=48  Identities=23%  Similarity=0.692  Sum_probs=40.6

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCCce
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR   68 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~~r   68 (74)
                      |.|+..| .++.+..|++++|.|.++|.|.|+|+|++ ||.++......+
T Consensus         1 P~~~~~~-~~~~v~~G~~~~l~c~~~~~p~~~v~W~~-~~~~l~~~~~~~   48 (90)
T PF07679_consen    1 PVFTKKP-KDVTVKEGESVTLECEVSGNPPPTVTWYK-NGRPLTSSQRYQ   48 (90)
T ss_dssp             EEEEEES-SEEEEETTSEEEEEEEEEESSSSEEEEEE-TTEEEESSSSEE
T ss_pred             CEEEEec-CCEEEeCCCEEEEEEEEEeCCCCcccccc-cccceeeeeeee
Confidence            7888886 77778899999999999999999999997 688887744443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.99  E-value=1.9e-09  Score=64.39  Aligned_cols=39  Identities=36%  Similarity=0.571  Sum_probs=32.7

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      .+||++.....|+.+.|.|.|.|+|.|+|+|++ ||..+.
T Consensus         4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~-~g~~~~   42 (90)
T cd04972           4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWII-AGLIVI   42 (90)
T ss_pred             ccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEE-CCEEcc
Confidence            445666668889999999999999999999997 676664

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.99  E-value=2.7e-09  Score=63.87  Aligned_cols=45  Identities=36%  Similarity=0.808  Sum_probs=35.2

Q ss_pred             cceEEEcCCCcEEecCC---CCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         18 GPIFIKEPPNRIDFSNT---TGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g---~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      +|.|+.+|.+ +.+..+   +.+.|.|.|.|+|.|+|+|++ ||.++...
T Consensus         1 ~P~f~~~p~~-~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k-~~~~l~~~   48 (91)
T cd04967           1 GPVFEEQPDD-TIFPEESDEGKVSLNCRARGSPPPTYRWLM-NGTEIDDE   48 (91)
T ss_pred             CCeeEeCCCC-EEccCCCCCCEEEEEEeeeEcCCCEEEEEE-CCEECCCC
Confidence            5899999665 445433   359999999999999999996 78887443

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=98.96  E-value=1.6e-09  Score=63.32  Aligned_cols=31  Identities=29%  Similarity=0.758  Sum_probs=26.7

Q ss_pred             CCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         34 TTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      |+.++|.|.|.|+|+|+|+|++ ||.++...+
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k-~g~~i~~~~   31 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLT-NGVPIEIAP   31 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEE-CCEEccccC
Confidence            4679999999999999999997 898886543

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=98.95  E-value=4.1e-09  Score=63.17  Aligned_cols=46  Identities=24%  Similarity=0.645  Sum_probs=37.7

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      .+|.|+..| +++....|+.+.|+|.|.|+|.|+++|++ ||..+...
T Consensus         2 ~~~~~~~~p-~~~~~~~G~~~~L~C~~~g~P~p~v~W~k-~g~~l~~~   47 (92)
T cd05747           2 LPATILTKP-RSLTVSEGESARFSCDVDGEPAPTVTWMR-EGQIIVSS   47 (92)
T ss_pred             CCCcccccC-ccEEEeCCCcEEEEEEEeecCCCEEEEEE-CCEECCCC
Confidence            468888885 55667888899999999999999999997 67776543

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=98.91  E-value=3.3e-09  Score=62.91  Aligned_cols=40  Identities=30%  Similarity=0.573  Sum_probs=31.9

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCe
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT   59 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~   59 (74)
                      |.+...| ..+....|+.++|.|.|.|+|.|+|+|.++++.
T Consensus         2 ~~~~~~p-~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~   41 (88)
T cd04968           2 SIIVVFP-KDTYALKGQNVTLECFALGNPVPQIKWRKVDGS   41 (88)
T ss_pred             CcEEECC-CceEEeCCCcEEEEEEeeEeCCCEEEEEECCCc
Confidence            4556665 555577888999999999999999999985553

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.87  E-value=6.5e-09  Score=61.70  Aligned_cols=41  Identities=22%  Similarity=0.575  Sum_probs=33.6

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      |+..| .+.....|+.+.|.|.|.|.|.|+++|++ ||.++..
T Consensus         2 ~~~~p-~~~~~~~G~~~~l~C~~~g~p~p~v~W~k-~g~~~~~   42 (85)
T cd05728           2 WLKVI-SDTEADIGSSLRWECKASGNPRPAYRWLK-NGQPLAS   42 (85)
T ss_pred             ccccC-CccEEcCCCcEEEEEEeeEeCCCEEEEEE-CCEECCC
Confidence            56665 44567788899999999999999999986 7877754

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.84  E-value=1.4e-08  Score=61.57  Aligned_cols=43  Identities=33%  Similarity=0.607  Sum_probs=33.2

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC-CCeeec
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS-DGTAVG   62 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~-dG~~i~   62 (74)
                      +|.++. +. ++...+|+.++|.|.|.|.|.|+|+|++. +|..+.
T Consensus         2 ~p~i~~-~~-~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~   45 (98)
T cd05870           2 QPHIIQ-LK-NETTVENGAATLSCKAEGEPIPEITWKRASDGHTFS   45 (98)
T ss_pred             CCEEEe-ec-cEEEcCCCcEEEEEecccCCCCeEEEEECCCCceec
Confidence            577754 44 45577888999999999999999999985 454443

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.83  E-value=5.4e-09  Score=60.48  Aligned_cols=29  Identities=24%  Similarity=0.676  Sum_probs=24.3

Q ss_pred             CCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         34 TTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      |+.+.|.|.|.|+|.|+|+|++ ||.++..
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k-~g~~l~~   29 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMK-GGEELTK   29 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEE-CCEECCC
Confidence            4569999999999999999997 6666643

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=98.80  E-value=2.1e-08  Score=60.10  Aligned_cols=37  Identities=22%  Similarity=0.463  Sum_probs=31.4

Q ss_pred             CcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         27 NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        27 ~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      ..+.+..|+.+.|.|.+.|+|+|+|+|++ ||.++...
T Consensus         3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k-~~~~i~~~   39 (86)
T cd05894           3 NTIVVVAGNKLRLDVPISGEPAPTVTWSR-GDKAFTET   39 (86)
T ss_pred             CEEEEEcCCEEEEEeeEeecCCCeEEEEE-CCEECccC
Confidence            35567788899999999999999999986 78888654

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.79  E-value=1.7e-08  Score=58.60  Aligned_cols=30  Identities=27%  Similarity=0.722  Sum_probs=25.9

Q ss_pred             CCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         34 TTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      |+.+.|.|.|.|+|.|+|+|++ ||.++...
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k-~g~~i~~~   30 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSI-NGAPIEGT   30 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEE-CCEECCCC
Confidence            4579999999999999999996 88887654

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.79  E-value=1.2e-08  Score=58.96  Aligned_cols=30  Identities=27%  Similarity=0.643  Sum_probs=25.8

Q ss_pred             CCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         33 NTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        33 ~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      +|+.+.|+|.|.|+|.|+|+|++ ||.++..
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k-~g~~~~~   30 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTK-GGSQLSV   30 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEE-CCEECCC
Confidence            46789999999999999999996 7877654

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.76  E-value=3.1e-08  Score=59.95  Aligned_cols=43  Identities=19%  Similarity=0.380  Sum_probs=33.2

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      .|.|+..|.+. ....|+.++|.|.|.|.|.|+|+|++ +|..+.
T Consensus         2 ~p~i~~~~~~~-~~~~g~~v~l~C~~~G~P~P~v~W~~-~~~~~~   44 (97)
T cd05869           2 KPKITYVENQT-AMELEEQITLTCEASGDPIPSITWRT-STRNIS   44 (97)
T ss_pred             CceEEEccCce-EEEcCCCEEEEEEeeEeCCCEEEEEE-CCcccc
Confidence            57777775444 34456789999999999999999997 666654

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.70  E-value=5.4e-08  Score=56.82  Aligned_cols=34  Identities=21%  Similarity=0.640  Sum_probs=28.6

Q ss_pred             EecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         30 DFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        30 ~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      .+..|..+.|.|.|.|.|.|+|+|++ ||..+...
T Consensus         5 ~v~~G~~~~L~C~~~g~P~p~i~W~k-~g~~l~~~   38 (85)
T cd05857           5 AVPAANTVKFRCPAAGNPTPTMRWLK-NGKEFKQE   38 (85)
T ss_pred             EcCCCCEEEEEEEcCCCCCCEEEEEE-CCEECCCC
Confidence            35678889999999999999999996 78777543

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.69  E-value=4.2e-08  Score=58.69  Aligned_cols=45  Identities=20%  Similarity=0.457  Sum_probs=33.3

Q ss_pred             ceEEEcC-CCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         19 PIFIKEP-PNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        19 P~fv~~P-p~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      |.+...+ +..+....|+.+.|.|.|.|.|.|+|+|.+ ||.++...
T Consensus         2 p~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k-~g~~~~~~   47 (95)
T cd05730           2 PTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTK-DGEPIESG   47 (95)
T ss_pred             CccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEE-CCEECcCC
Confidence            4444433 223456678889999999999999999986 78877543

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.68  E-value=1.1e-07  Score=57.66  Aligned_cols=44  Identities=20%  Similarity=0.376  Sum_probs=33.2

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCC-eEEEEeCCCeeecCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSDGTAVGDV   64 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P-~I~W~~~dG~~i~~~   64 (74)
                      +|.+ ..+++. ....|..+.|.|.|.|+|.| +|+|.+ ||.++...
T Consensus         2 pp~i-~~~~~~-~~~~G~~v~L~C~~~g~P~P~~v~W~~-~~~~i~~~   46 (98)
T cd05758           2 PPII-TSEATQ-YAILGDKGRVECFIFSTPPPDRIVWTW-KENELESG   46 (98)
T ss_pred             CCeE-cCCCcE-EEeCCCcEEEEEEEcccCCCCEeEEEE-CCEEccCC
Confidence            4555 444444 45778889999999999999 699986 77777544

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.68  E-value=4.6e-08  Score=55.95  Aligned_cols=31  Identities=29%  Similarity=0.812  Sum_probs=26.2

Q ss_pred             CCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         34 TTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      |+.++|.|.|.|+|.|+|+|++ ||.++....
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~-~g~~~~~~~   31 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRL-NGVPIEELP   31 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEE-CCEECCCCC
Confidence            4579999999999999999996 788776544

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.68  E-value=3.6e-08  Score=57.97  Aligned_cols=25  Identities=36%  Similarity=0.872  Sum_probs=21.8

Q ss_pred             eEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         37 AQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        37 v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      +.|+|.|.|+|.|+|+|++ ||.++.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k-~g~~~~   25 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTR-NGKFFN   25 (77)
T ss_pred             CEEEEeccccCCCEEEEEE-CCEEcc
Confidence            4799999999999999997 787664

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.68  E-value=4.4e-08  Score=61.05  Aligned_cols=46  Identities=26%  Similarity=0.507  Sum_probs=34.2

Q ss_pred             ccceEEEcCCCcEEec---CCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         17 LGPIFIKEPPNRIDFS---NTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~---~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      .+|.|...|......+   .|..+.|.|.|.|+|.|+++|.+ ||.++..
T Consensus         3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k-~g~~l~~   51 (109)
T cd05773           3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAK-NGVPLDL   51 (109)
T ss_pred             cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEE-CCEECCC
Confidence            4678776655333232   34569999999999999999996 8888753

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=98.68  E-value=8.8e-08  Score=58.84  Aligned_cols=37  Identities=16%  Similarity=0.380  Sum_probs=30.1

Q ss_pred             CcEEecCCCCeEEEEEEcccCC-CeEEEEeCCCeeecC
Q psy11558         27 NRIDFSNTTGAQVECTARGSPN-PEIIWIRSDGTAVGD   63 (74)
Q Consensus        27 ~~v~~~~g~~v~L~C~A~G~P~-P~I~W~~~dG~~i~~   63 (74)
                      ++..+..|+.++|+|.|.|.|. |+|+|+++||..+..
T Consensus         8 ~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~   45 (96)
T cd05865           8 SQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTP   45 (96)
T ss_pred             CccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccc
Confidence            4445778889999999999995 799999878876543

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.68  E-value=3.5e-08  Score=58.02  Aligned_cols=25  Identities=36%  Similarity=0.912  Sum_probs=21.9

Q ss_pred             eEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         37 AQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        37 v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      +.|.|.|.|+|.|+|+|++ ||.++.
T Consensus         1 ~~l~C~a~G~P~P~i~W~k-~g~~l~   25 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTR-NGTHFD   25 (77)
T ss_pred             CEEEeeCcccCCCeEEEEE-CCeECC
Confidence            4799999999999999997 787764

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.67  E-value=6.1e-08  Score=55.74  Aligned_cols=27  Identities=30%  Similarity=0.777  Sum_probs=22.7

Q ss_pred             CeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         36 GAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        36 ~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      +++|.|.|.|+|.|+|+|.+ ||..+..
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k-~g~~~~~   27 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVK-NGDMVIP   27 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEE-CCeECCC
Confidence            37999999999999999997 6666544

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=98.65  E-value=7e-08  Score=56.92  Aligned_cols=26  Identities=31%  Similarity=0.704  Sum_probs=22.9

Q ss_pred             eEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         37 AQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        37 v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      +.|+|.|.|+|+|+|+|++ ||.+|..
T Consensus         1 v~l~C~v~G~P~P~i~W~k-~~~~i~~   26 (75)
T cd05892           1 VKLECQISAIPPPKIFWKR-NNEMVQY   26 (75)
T ss_pred             CEEEEEEEecCCCeEEEEE-CCEECcC
Confidence            5799999999999999997 7888763

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.65  E-value=3.9e-08  Score=57.46  Aligned_cols=26  Identities=35%  Similarity=0.868  Sum_probs=22.6

Q ss_pred             eEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         37 AQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        37 v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      ++|.|.|.|+|.|+|+|.+ ||.++..
T Consensus         1 i~l~C~~~G~P~P~v~W~k-~g~~l~~   26 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTR-NGTHFDP   26 (77)
T ss_pred             CEEEeeCcccCCCeEEEEE-CCeECCC
Confidence            4799999999999999996 8887754

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=98.65  E-value=1.4e-07  Score=56.99  Aligned_cols=40  Identities=23%  Similarity=0.596  Sum_probs=32.6

Q ss_pred             CCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         25 PPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        25 Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      +|..+...+|+.+.|.|.+.|+|.|.+.|++ +|..+....
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k-~~~~~~~~~   46 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFK-NDQDIELSE   46 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEE-CCEECCCCC
Confidence            4567778899999999999999999999997 566555433

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.63  E-value=1.5e-07  Score=54.76  Aligned_cols=37  Identities=30%  Similarity=0.677  Sum_probs=30.7

Q ss_pred             CCcEEecCCCCeEEEEEE-cccCCCeEEEEeCCCeeecC
Q psy11558         26 PNRIDFSNTTGAQVECTA-RGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A-~G~P~P~I~W~~~dG~~i~~   63 (74)
                      |..+.+..|+.+.|.|.+ .|.|.|+|+|++ ||.++..
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k-~g~~~~~   40 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRK-DGQPLNL   40 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEE-CCEECCC
Confidence            455567788899999999 899999999997 7877654

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.62  E-value=7.4e-08  Score=55.77  Aligned_cols=26  Identities=42%  Similarity=0.862  Sum_probs=22.7

Q ss_pred             eEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         37 AQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        37 v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      ++|+|.|.|+|.|+|+|++ ||.++..
T Consensus         1 a~l~C~~~G~P~p~v~W~k-~~~~~~~   26 (74)
T cd05738           1 ATMLCAASGNPDPEITWFK-DFLPVDT   26 (74)
T ss_pred             CEEEEEEeEecCCEEEEEE-CCEECcc
Confidence            5799999999999999997 7777754

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=98.62  E-value=8.1e-08  Score=59.64  Aligned_cols=36  Identities=17%  Similarity=0.314  Sum_probs=31.2

Q ss_pred             CcEEecCCCCeEEEEEEcc-cCCCeEEEEeCCCeeecC
Q psy11558         27 NRIDFSNTTGAQVECTARG-SPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        27 ~~v~~~~g~~v~L~C~A~G-~P~P~I~W~~~dG~~i~~   63 (74)
                      +.+....|+++.|.|.|.| .|+|+|+|++ ||.+|..
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~K-dg~~i~~   47 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTY-DNRTLTN   47 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEe-CCeeCCC
Confidence            4556678889999999999 9999999996 8998864

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=98.60  E-value=1e-07  Score=56.05  Aligned_cols=26  Identities=27%  Similarity=0.857  Sum_probs=22.1

Q ss_pred             eEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         37 AQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        37 v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      +.|+|.|.|.|.|+|+|++ ||.++..
T Consensus         1 v~l~C~v~G~P~P~v~W~k-~~~~l~~   26 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKK-ENESLTH   26 (75)
T ss_pred             CEEEEEEeEecCCEEEEEE-CCEECCC
Confidence            5799999999999999997 6666643

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=98.60  E-value=8.9e-08  Score=55.94  Aligned_cols=28  Identities=18%  Similarity=0.544  Sum_probs=23.9

Q ss_pred             CCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         34 TTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      |+.+.|+|.|.|.|.|+|+|++ ||.++.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k-~~~~l~   28 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSK-GTELLV   28 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEe-CCEecc
Confidence            4569999999999999999996 677654

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=98.59  E-value=9.9e-08  Score=55.72  Aligned_cols=28  Identities=36%  Similarity=0.821  Sum_probs=23.8

Q ss_pred             eEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         37 AQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        37 v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      ++|.|.|.|+|.|+|+|++ ||.++....
T Consensus         1 v~L~C~~~g~P~p~v~W~k-~g~~l~~~~   28 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFR-DGTPLSDGQ   28 (77)
T ss_pred             CEEEEEeeecCCCcEEEEE-CCEECCCCC
Confidence            5899999999999999997 788875543

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=98.58  E-value=1.9e-07  Score=55.64  Aligned_cols=42  Identities=26%  Similarity=0.423  Sum_probs=31.6

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      .|.+. .+++ ....+|+.+.|.|.|.|.|.|+|+|++ +|..+.
T Consensus         2 ~P~i~-~~~~-~~~~~g~~v~l~C~~~g~p~p~v~W~~-~~~~~~   43 (96)
T cd05732           2 QPKIT-YLEN-QTAVELEQITLTCEAEGDPIPEITWRR-ATRNFS   43 (96)
T ss_pred             Cccce-ecCc-eeEecCCcEEEEEEEeEcCCCcEEEEE-CCcccC
Confidence            46665 3333 456678889999999999999999997 555443

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.58  E-value=1.5e-07  Score=53.84  Aligned_cols=30  Identities=40%  Similarity=0.894  Sum_probs=26.2

Q ss_pred             CCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         34 TTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      |+.+.|.|.+.|.|.|+|+|+++||..+..
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~   30 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISN   30 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecC
Confidence            456999999999999999999888887754

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=98.55  E-value=1.8e-07  Score=54.49  Aligned_cols=29  Identities=31%  Similarity=0.523  Sum_probs=23.9

Q ss_pred             CCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         34 TTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      |+.++|.|.|.|.|.|+|+|++ |+..+..
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~-~~~~~~~   29 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRL-NWGHVPD   29 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEE-CCeECCC
Confidence            4579999999999999999986 5655543

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=98.54  E-value=2e-07  Score=54.34  Aligned_cols=26  Identities=23%  Similarity=0.672  Sum_probs=22.8

Q ss_pred             eEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         37 AQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        37 v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      ++|+|.+.|.|+|+|+|++ ||..+..
T Consensus         1 v~L~C~v~G~P~P~v~W~k-~~~~i~~   26 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKK-NNEMLTY   26 (75)
T ss_pred             CEEEEEEeecCCCeEEEEE-CCEECCC
Confidence            5799999999999999997 7887764

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.54  E-value=1.2e-07  Score=56.86  Aligned_cols=23  Identities=17%  Similarity=0.641  Sum_probs=20.9

Q ss_pred             CCCeEEEEEEcccCCCeEEEEeC
Q psy11558         34 TTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      |+.++|+|.|.|+|.|+|+|++.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~   23 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKH   23 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEe
Confidence            45799999999999999999985

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=98.53  E-value=3.3e-07  Score=56.03  Aligned_cols=38  Identities=24%  Similarity=0.488  Sum_probs=31.9

Q ss_pred             CCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         26 PNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      +.++....|+.+.|+|.|.|.|. .|+|+++||.++...
T Consensus         7 ~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~   44 (92)
T cd05866           7 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSS   44 (92)
T ss_pred             ecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCC
Confidence            45556788989999999999998 999998888887544

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.53  E-value=1.1e-07  Score=54.25  Aligned_cols=27  Identities=41%  Similarity=0.962  Sum_probs=23.1

Q ss_pred             eEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         37 AQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        37 v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      |.|.|.|.|.|.|+|+|++ ||.++...
T Consensus         1 v~L~C~~~g~P~p~i~W~k-~g~~~~~~   27 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNK-DGVQVTES   27 (69)
T ss_pred             CEeEecceEeCCCEEEEEE-CCEECCCC
Confidence            5799999999999999996 78877543

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.51  E-value=2.2e-07  Score=54.07  Aligned_cols=26  Identities=23%  Similarity=0.617  Sum_probs=23.1

Q ss_pred             eEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         37 AQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        37 v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      +.|.|.+.|.|+|+++|++ ||.+|..
T Consensus         1 ~~l~c~v~g~P~P~v~W~k-dg~~l~~   26 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYK-DGKLISG   26 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEE-CCEECcc
Confidence            4799999999999999997 8988863

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=98.51  E-value=2.4e-07  Score=53.16  Aligned_cols=30  Identities=20%  Similarity=0.576  Sum_probs=24.8

Q ss_pred             CCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         34 TTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      |+.+.|.|.+.|+|.|+++|.+ +|..+...
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k-~~~~~~~~   30 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSK-GTELLTNS   30 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEE-CCEEcccC
Confidence            4569999999999999999997 67666443

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=98.50  E-value=2.5e-07  Score=57.25  Aligned_cols=35  Identities=14%  Similarity=0.228  Sum_probs=29.2

Q ss_pred             EEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         29 IDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        29 v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      .....+..+.|.|.+.|.|+|+|+|++ ||.+|...
T Consensus        13 ~~~~~~~~~~l~~~v~g~P~P~v~W~k-dg~~l~~~   47 (101)
T cd05859          13 EFANLHEVKEFVVEVEAYPPPQIRWLK-DNRTLIEN   47 (101)
T ss_pred             EEEecCCcEEEEEEEEEeCCCceEEEE-CCEECcCC
Confidence            345567789999999999999999996 89887643

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>KOG3513|consensus

Probab=98.49  E-value=2e-07  Score=76.99  Aligned_cols=49  Identities=22%  Similarity=0.643  Sum_probs=41.3

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG   66 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~   66 (74)
                      .++|.|++. +++..+..|+.+++.|.|.|.|.|+|+|.+ ||.++.....
T Consensus       329 ~a~P~w~~~-~~d~~~~~gs~v~~eC~a~g~P~p~v~Wlk-Ng~pl~~~~r  377 (1051)
T KOG3513|consen  329 YAPPYWLQK-PQDTEADTGSNVTLECKASGKPNPTVKWLK-NGEPLEPAER  377 (1051)
T ss_pred             ecCchhhcc-cceeEecCCCCeEEEEEecCCCCCceEEee-CCeecCccCC
Confidence            468999998 466668888899999999999999999995 9999874443

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.49  E-value=2.8e-07  Score=52.85  Aligned_cols=32  Identities=25%  Similarity=0.717  Sum_probs=26.6

Q ss_pred             EecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         30 DFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        30 ~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      ....|+.+.|.|.+.|.|.|+|+|++ ||..+.
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k-~~~~~~   36 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLK-DNKPLT   36 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEE-CCcCCc
Confidence            44567789999999999999999997 666553

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.48  E-value=1.9e-07  Score=53.71  Aligned_cols=22  Identities=45%  Similarity=1.102  Sum_probs=19.4

Q ss_pred             eEEEEEEcccCCCeEEEEeCCC
Q psy11558         37 AQVECTARGSPNPEIIWIRSDG   58 (74)
Q Consensus        37 v~L~C~A~G~P~P~I~W~~~dG   58 (74)
                      ++|.|.|.|.|.|+|+|+++++
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~   22 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGG   22 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCC
Confidence            5799999999999999998544

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=98.45  E-value=4.9e-07  Score=51.80  Aligned_cols=27  Identities=26%  Similarity=0.656  Sum_probs=23.0

Q ss_pred             eEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         37 AQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        37 v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      +.|+|.|.|.|.|+|+|++ ||..+...
T Consensus         2 ~~l~c~~~G~P~p~v~W~k-~g~~l~~~   28 (74)
T cd05748           2 VRLEVPISGRPTPTVTWSK-DGKPLKLS   28 (74)
T ss_pred             EEEEeeEeeeCCCeEEEEE-CCEEcCCC
Confidence            7899999999999999996 77776443

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.44  E-value=9.5e-07  Score=53.25  Aligned_cols=39  Identities=21%  Similarity=0.414  Sum_probs=31.3

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      ..|+ .+....|+.+.|.|.|.|.| |.|+|++.||..+..
T Consensus         5 v~p~-~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~   43 (92)
T cd04977           5 IVPS-QGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVT   43 (92)
T ss_pred             EecC-cEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEecc
Confidence            4444 45678888999999999998 599999878877655

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.44  E-value=6.5e-07  Score=53.67  Aligned_cols=30  Identities=17%  Similarity=0.396  Sum_probs=25.4

Q ss_pred             CCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         34 TTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      |+.++|.|.|.|.|+|.|+|.+ ||..+...
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k-~~~~i~~~   30 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEK-EDRIINPE   30 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEee-CCEECCCC
Confidence            5679999999999999999986 78777543

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.42  E-value=2.8e-07  Score=53.75  Aligned_cols=26  Identities=23%  Similarity=0.558  Sum_probs=22.9

Q ss_pred             eEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         37 AQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        37 v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      +.|.|.|.|.|.|+|+|++ ||.++..
T Consensus         1 ~~~~c~v~G~P~P~v~W~k-~g~~l~~   26 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYK-NGQLIVL   26 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEE-CCEECCC
Confidence            4799999999999999997 8888754

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.42  E-value=9.2e-07  Score=52.44  Aligned_cols=42  Identities=17%  Similarity=0.415  Sum_probs=33.1

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccCC-CeEEEEeCCCeeec
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSPN-PEIIWIRSDGTAVG   62 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~-P~I~W~~~dG~~i~   62 (74)
                      |+....|+.. .+.+|++++|.|.|.|+|. +.++|++ ||..+.
T Consensus         1 ~vv~~~P~~~-~v~~G~~V~L~C~~~~~p~~~~~~W~k-ng~~l~   43 (78)
T cd05752           1 AVVSLDPPWT-TIFQGEKVTLTCNGFNSPEQNSTQWYH-NGKLLE   43 (78)
T ss_pred             CeEEeCCCCe-EeeCCCCEEEEEeCCCCCCCccEEEEE-CCEEee
Confidence            5667776655 4567888999999999996 4799996 788873

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.42  E-value=7.7e-07  Score=53.10  Aligned_cols=28  Identities=18%  Similarity=0.590  Sum_probs=23.1

Q ss_pred             CCCeEEEEEEcccCCCeEEEEeC---CCeee
Q psy11558         34 TTGAQVECTARGSPNPEIIWIRS---DGTAV   61 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P~I~W~~~---dG~~i   61 (74)
                      |+.++|+|.|.|+|.|+|+|++.   +|..+
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~   31 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKY   31 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEe
Confidence            45799999999999999999974   35544

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=98.40  E-value=5.7e-07  Score=53.99  Aligned_cols=28  Identities=21%  Similarity=0.635  Sum_probs=23.7

Q ss_pred             EEEEEEcccCCCeEEEEeCCCeeecCCCC
Q psy11558         38 QVECTARGSPNPEIIWIRSDGTAVGDVPG   66 (74)
Q Consensus        38 ~L~C~A~G~P~P~I~W~~~dG~~i~~~~~   66 (74)
                      -+.|.+.|+|+|+|+|++ ||.+|.+...
T Consensus         2 ~i~~~v~G~P~Pti~W~k-ng~~l~~~~~   29 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFH-EGAILNESEY   29 (79)
T ss_pred             eEEEEEeEeCCCceEEEE-CCEECCCCcc
Confidence            378999999999999996 8998875543

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.39  E-value=6.7e-07  Score=55.68  Aligned_cols=44  Identities=18%  Similarity=0.382  Sum_probs=36.0

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEE-EcccCCCeEEEEeCCCeee
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECT-ARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~-A~G~P~P~I~W~~~dG~~i   61 (74)
                      .|.|..+..+.+.+.+|.+++|.|. +.|.|.|+|.|++++...+
T Consensus         2 ~~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i   46 (95)
T cd05845           2 TPKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHI   46 (95)
T ss_pred             CCcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccc
Confidence            3667777778888999999999997 7999999999996544434

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.39  E-value=3e-07  Score=52.83  Aligned_cols=24  Identities=38%  Similarity=0.771  Sum_probs=20.1

Q ss_pred             eEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         37 AQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        37 v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      +.|.|.|.|+|+|+|+|+++ |.++
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~-~~~~   24 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRI-DGPL   24 (71)
T ss_pred             CEEEEEeeEecCCeEEEEEC-CcCC
Confidence            47999999999999999985 4444

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.38  E-value=6.1e-07  Score=52.90  Aligned_cols=27  Identities=26%  Similarity=0.688  Sum_probs=23.0

Q ss_pred             eEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         37 AQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        37 v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      +.|.|.+.|.|+|+++|.+ ||.++...
T Consensus         1 ~~l~c~v~g~P~P~v~W~k-dg~~l~~~   27 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLK-DGLPAAEK   27 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEE-CCEECCCC
Confidence            4799999999999999996 78887543

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=98.38  E-value=5.1e-07  Score=52.10  Aligned_cols=27  Identities=22%  Similarity=0.652  Sum_probs=23.4

Q ss_pred             eEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         37 AQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        37 v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      +.|.|.+.|.|+|+++|++ ||.++...
T Consensus         1 ~~l~c~v~g~P~p~v~W~k-~g~~l~~~   27 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYK-NGKLISEK   27 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEE-CCEECCCC
Confidence            4799999999999999997 88887543

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.36  E-value=9.4e-07  Score=50.83  Aligned_cols=28  Identities=29%  Similarity=0.754  Sum_probs=23.2

Q ss_pred             eEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         37 AQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        37 v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      +.|.|.|.|.|+|.|+|++ ||..+....
T Consensus         1 ~~L~C~v~g~P~p~v~W~k-~~~~l~~~~   28 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLK-NGMDITPKL   28 (76)
T ss_pred             CEeEeEeeecCCCEEEEEE-CCEECCCCC
Confidence            4799999999999999986 777775443

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.35  E-value=1.2e-06  Score=53.04  Aligned_cols=42  Identities=17%  Similarity=0.409  Sum_probs=31.1

Q ss_pred             ceEEEc-CCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         19 PIFIKE-PPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        19 P~fv~~-Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      |.+... .+......+|++++|+|.|.|. .|.|+|++ ||.++.
T Consensus         2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~k-ng~~l~   44 (91)
T cd05740           2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVN-NGSLLV   44 (91)
T ss_pred             CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEE-CCEECC
Confidence            555422 2334456788899999999999 99999996 676653

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>KOG3513|consensus

Probab=98.35  E-value=1.3e-06  Score=72.34  Aligned_cols=51  Identities=25%  Similarity=0.555  Sum_probs=39.9

Q ss_pred             ceEEEcCCCcEEecCCCC--eEEEEEEcccCCCeEEEEeCCCeeecCCCCceEE
Q psy11558         19 PIFIKEPPNRIDFSNTTG--AQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKY   70 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~--v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~~r~~   70 (74)
                      |.|+++|.+.+..-....  +.|+|.|.|+|.|+.+|++ ||..+......+..
T Consensus        40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~G~P~Psy~W~k-ng~~~d~~~~~~~~   92 (1051)
T KOG3513|consen   40 PVFVEQPNDVIVPFPSDDSSVTLNCEANGNPEPSYRWTK-NGTEFDPTEYPRVS   92 (1051)
T ss_pred             ceeeecCCceEEecccCCccEEEEEEecCCCCceeEEEE-CCeeccccccccee
Confidence            999999876654443333  9999999999999999996 88877766655544

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.34  E-value=6.4e-07  Score=53.39  Aligned_cols=27  Identities=26%  Similarity=0.730  Sum_probs=23.4

Q ss_pred             EEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         38 QVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        38 ~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      -++|.|.|+|+|+|+|++ ||.+|....
T Consensus         2 ~i~~~v~G~P~P~v~W~k-~g~~i~~~~   28 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYH-NGAVLNESD   28 (81)
T ss_pred             eEEEEeEeeCCCcEEEEE-CCEECcCCC
Confidence            378999999999999997 898887654

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.34  E-value=1.8e-06  Score=50.67  Aligned_cols=37  Identities=22%  Similarity=0.470  Sum_probs=30.6

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcc-cCCCeEEEEeCC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARG-SPNPEIIWIRSD   57 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P~I~W~~~d   57 (74)
                      ++.++|..+....|+.++|.|.|.| .|.|.|.|++.+
T Consensus         3 ~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~   40 (85)
T cd05754           3 VTVEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVG   40 (85)
T ss_pred             EEecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECC
Confidence            4556677777889999999999985 799999999754

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.34  E-value=3.9e-07  Score=52.99  Aligned_cols=23  Identities=39%  Similarity=0.962  Sum_probs=20.3

Q ss_pred             eEEEEEEcccCCCeEEEEeCCCe
Q psy11558         37 AQVECTARGSPNPEIIWIRSDGT   59 (74)
Q Consensus        37 v~L~C~A~G~P~P~I~W~~~dG~   59 (74)
                      |+|+|.|.|.|+|+|+|++.++.
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~   23 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGR   23 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCc
Confidence            58999999999999999986553

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.33  E-value=1.4e-06  Score=50.96  Aligned_cols=36  Identities=22%  Similarity=0.427  Sum_probs=28.8

Q ss_pred             CcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         27 NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        27 ~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      ....+..|+.+.|.|.|.|. .|+|+|++ ||.+|...
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k-~g~~l~~~   37 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTK-DGVQLGEN   37 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEee-CCcCCCCC
Confidence            34456788899999999996 68999996 88887653

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.33  E-value=1.2e-06  Score=53.82  Aligned_cols=33  Identities=9%  Similarity=0.266  Sum_probs=27.7

Q ss_pred             CcEEecCCCCeEEEEEEcccCCCeEEEEeCCCe
Q psy11558         27 NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT   59 (74)
Q Consensus        27 ~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~   59 (74)
                      +++.+..|+++.|+|.|.|.|.|+|.|.+.++.
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~   37 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQ   37 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCcc
Confidence            345677888999999999999999999976553

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.33  E-value=1.1e-06  Score=49.93  Aligned_cols=29  Identities=21%  Similarity=0.523  Sum_probs=24.0

Q ss_pred             eEEEEEEcc-cCCCeEEEEeCCCeeecCCCC
Q psy11558         37 AQVECTARG-SPNPEIIWIRSDGTAVGDVPG   66 (74)
Q Consensus        37 v~L~C~A~G-~P~P~I~W~~~dG~~i~~~~~   66 (74)
                      .+|.|.|.| +|.|+++|++ ||.++.....
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k-~g~~l~~~~~   30 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFK-DGKELNRKNK   30 (75)
T ss_pred             CEEEEEccCCCCCceEEEEc-CCeeccccCC
Confidence            369999999 9999999997 7888765443

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.29  E-value=9e-07  Score=52.69  Aligned_cols=25  Identities=28%  Similarity=0.763  Sum_probs=21.7

Q ss_pred             CCCeEEEEEEcccCCCeEEEEeCCC
Q psy11558         34 TTGAQVECTARGSPNPEIIWIRSDG   58 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P~I~W~~~dG   58 (74)
                      |+.++|.|.|.|+|.|+|.|+++++
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~   25 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGS   25 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCC
Confidence            4579999999999999999997544

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.29  E-value=7.5e-07  Score=50.10  Aligned_cols=22  Identities=50%  Similarity=1.031  Sum_probs=19.3

Q ss_pred             eEEEEEEcccCCCeEEEEeCCC
Q psy11558         37 AQVECTARGSPNPEIIWIRSDG   58 (74)
Q Consensus        37 v~L~C~A~G~P~P~I~W~~~dG   58 (74)
                      +.|.|.|.|.|.|+|+|+++++
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~   22 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGG   22 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCe
Confidence            4799999999999999998544

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.26  E-value=2.3e-06  Score=52.20  Aligned_cols=34  Identities=12%  Similarity=0.323  Sum_probs=28.6

Q ss_pred             CCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCe
Q psy11558         26 PNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT   59 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~   59 (74)
                      .+.+.+.+|+++.|+|.+.|.|.|.|.|++.++.
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~   37 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQ   37 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCe
Confidence            3556788999999999999999999999865444

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=98.25  E-value=2.5e-06  Score=50.90  Aligned_cols=28  Identities=18%  Similarity=0.366  Sum_probs=23.6

Q ss_pred             CeEEEEEEcccCCC--eEEEEeCCCeeecCC
Q psy11558         36 GAQVECTARGSPNP--EIIWIRSDGTAVGDV   64 (74)
Q Consensus        36 ~v~L~C~A~G~P~P--~I~W~~~dG~~i~~~   64 (74)
                      .++|.|.|.|+|.|  +|+|.+ ||.++...
T Consensus         2 ~~~L~C~a~g~P~p~~~v~W~~-~g~~i~~~   31 (85)
T cd05854           2 NLTLQCHASHDPTMDLTFTWSL-DDFPIDLD   31 (85)
T ss_pred             cEEEEEEEecCCCCCeEEEEEE-CCeEcccc
Confidence            48999999999998  589996 88887543

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.25  E-value=1.6e-06  Score=49.81  Aligned_cols=23  Identities=35%  Similarity=0.787  Sum_probs=20.9

Q ss_pred             CCCeEEEEEEcccCCCeEEEEeC
Q psy11558         34 TTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      |+.++|.|.+.|.|.|+|+|++.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~   23 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQ   23 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEec
Confidence            45799999999999999999975

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.24  E-value=1e-06  Score=49.92  Aligned_cols=22  Identities=32%  Similarity=0.999  Sum_probs=19.4

Q ss_pred             eEEEEEEcccCCCeEEEEeCCC
Q psy11558         37 AQVECTARGSPNPEIIWIRSDG   58 (74)
Q Consensus        37 v~L~C~A~G~P~P~I~W~~~dG   58 (74)
                      ++|.|.+.|+|.|+|+|.++++
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~   22 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDG   22 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCc
Confidence            5799999999999999998544

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>KOG4222|consensus

Probab=98.21  E-value=1.1e-06  Score=73.35  Aligned_cols=60  Identities=27%  Similarity=0.567  Sum_probs=45.1

Q ss_pred             eecccCCCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCe-eecCCCCceEE
Q psy11558          9 TMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT-AVGDVPGLRKY   70 (74)
Q Consensus         9 ~~~~~~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~-~i~~~~~~r~~   70 (74)
                      ..+......+|.++.-| +++.++.++.++|+|.|+|+|+|+|+|++ ||+ .....++..++
T Consensus        22 ~~~~r~qd~~p~iiehp-~d~vvs~~~patlnc~asG~ppPti~w~k-~G~~~~~~e~~shR~   82 (1281)
T KOG4222|consen   22 CPSLRAQDQPPRIIEHP-HDLVVSKGEPATLNCKASGDPPPTIEWYK-DGENVFKGEPGSHRF   82 (1281)
T ss_pred             ccccccccCCCceEecc-hhhhccCCCCceeecCCCCCCCCceeccc-CCcccCCCCCCCcce
Confidence            34455667899999985 55558888899999999999999999996 774 44455544443

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.18  E-value=6.9e-06  Score=50.13  Aligned_cols=36  Identities=17%  Similarity=0.448  Sum_probs=29.4

Q ss_pred             CcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         27 NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        27 ~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      ++..+..|+++.|.|.+.+ |.|+|+|.+ ||.+|...
T Consensus         4 ~~~~v~~G~~v~L~C~~~~-~~~~i~W~~-ng~~i~~~   39 (87)
T cd05873           4 RQRTFKLGNNAELKCSPKS-NLARVVWKF-DGKVLTPE   39 (87)
T ss_pred             ceEEEECCCCEEEEEECCC-CCCeEEEEE-CCEECCCC
Confidence            4445778889999999875 889999996 89888654

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>KOG4194|consensus

Probab=98.16  E-value=1.4e-06  Score=69.82  Aligned_cols=45  Identities=36%  Similarity=0.742  Sum_probs=37.9

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      ...|.|+++| .++....|+-+.|.|.|+|.|.|+|.|.+.+|...
T Consensus       610 ~~~PsFtktP-~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdF  654 (873)
T KOG4194|consen  610 NQAPSFTKTP-EDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDF  654 (873)
T ss_pred             eccCccccCc-ccceeecccceeeeeeccCCCCcceeehhcCCCCC
Confidence            4689999995 56677788889999999999999999998666543

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.10  E-value=6.1e-06  Score=48.87  Aligned_cols=35  Identities=11%  Similarity=0.426  Sum_probs=28.0

Q ss_pred             CCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         26 PNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      +..+.+..|+.+.|+|.+.| |.|+|.|++ ||..+.
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k-~~~~~~   37 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLF-QGGPLQ   37 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEE-CCcccc
Confidence            45556778889999999998 999999997 555443

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.09  E-value=1.5e-05  Score=45.53  Aligned_cols=31  Identities=29%  Similarity=0.802  Sum_probs=26.1

Q ss_pred             ecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         31 FSNTTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      ...|+.+.|.|.|.|.|.|.|+|++ +|..+.
T Consensus         6 ~~~G~~~~l~C~~~~~p~~~v~W~k-~~~~~~   36 (85)
T cd05729           6 VPAGSTVRLKCPASGNPRPTITWLK-DGKPFK   36 (85)
T ss_pred             ecCCCcEEEEEEcCCCCCCeEEEEE-CCEECc
Confidence            4567789999999999999999997 666654

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.07  E-value=7.2e-06  Score=48.19  Aligned_cols=27  Identities=19%  Similarity=0.479  Sum_probs=22.9

Q ss_pred             CeEEEEEEcccCCC--eEEEEeCCCeeecC
Q psy11558         36 GAQVECTARGSPNP--EIIWIRSDGTAVGD   63 (74)
Q Consensus        36 ~v~L~C~A~G~P~P--~I~W~~~dG~~i~~   63 (74)
                      +++|.|.|.|+|.|  +++|.+ ||.++..
T Consensus         2 ~~~L~C~~~g~P~p~i~~~W~~-~g~~i~~   30 (85)
T cd04970           2 SITLQCHASHDPTLDLTFTWSF-NGVPIDF   30 (85)
T ss_pred             cEEEEEEEecCCCCCeEEEEEE-CCeEeec
Confidence            58999999999999  669996 8888753

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.04  E-value=1.4e-05  Score=44.85  Aligned_cols=43  Identities=19%  Similarity=0.689  Sum_probs=33.0

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      |.+..++ ..  +..|+.++|.|.+.|.|.+++.|.+ ++..+...+
T Consensus         2 P~l~~~~-~~--v~~g~~~~l~C~~~~~p~~~~~w~~-~~~~~~~~~   44 (80)
T PF13895_consen    2 PVLSSSP-QS--VEEGDSVTLTCSVSGNPPPQVQWYK-NGSPINSSQ   44 (80)
T ss_dssp             -EEEEES-SE--EETTSEEEEEEEEESSSSSEEEEEE-TTEEEEEES
T ss_pred             cEEEccc-eE--EeCCCcEEEEEEEEcccceeeeeee-eeeeeeeee
Confidence            6666664 33  4568889999999999999999997 777776443

...

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=97.94  E-value=2.6e-05  Score=46.62  Aligned_cols=34  Identities=12%  Similarity=0.398  Sum_probs=28.3

Q ss_pred             CcEEecCCCCeEEEEEEcccCCCeEEEEeCCCee
Q psy11558         27 NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTA   60 (74)
Q Consensus        27 ~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~   60 (74)
                      +.+.+..|+++.|.|.+.|.|.|.+.|++.++..
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~   38 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQT   38 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcE
Confidence            4556788999999999999999999998655543

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=97.94  E-value=2.2e-05  Score=45.78  Aligned_cols=26  Identities=46%  Similarity=0.995  Sum_probs=22.2

Q ss_pred             eEEEEEEcc-cCCCeEEEEeCCCeeecC
Q psy11558         37 AQVECTARG-SPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        37 v~L~C~A~G-~P~P~I~W~~~dG~~i~~   63 (74)
                      +.|.|.|.| .|.|+|+|++ ||.++..
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~-~g~~l~~   28 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFR-DGEVLDG   28 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEE-CCEEccC
Confidence            689999998 7999999997 7887654

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>KOG4221|consensus

Probab=97.87  E-value=5.4e-05  Score=63.90  Aligned_cols=46  Identities=26%  Similarity=0.663  Sum_probs=37.5

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      ...-+|+.+|...+ ...|++++|+|.|+|.|+|+|+|++ ||..|.-
T Consensus       235 ~~~~~fl~~p~~~~-v~~g~~v~leCvvs~~p~p~v~Wlr-ng~~i~~  280 (1381)
T KOG4221|consen  235 LNKLVFLDEPSNAV-VVEGDDVVLECVVSGVPKPSVKWLR-NGEKISV  280 (1381)
T ss_pred             ccceeeecCCCccc-cccCCcEEEEEEecCCCCCceEEee-CCeeeee
Confidence            44556999976665 5667789999999999999999997 8988753

>PHA02785 IL-beta-binding protein; Provisional

Probab=97.85  E-value=6.9e-05  Score=54.49  Aligned_cols=40  Identities=18%  Similarity=0.449  Sum_probs=31.7

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCC---eEEEEeCCCeeecC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNP---EIIWIRSDGTAVGD   63 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P---~I~W~~~dG~~i~~   63 (74)
                      +..| +.+....|+.+.|.|.|.|.|.|   .|.|.+ ||..|..
T Consensus       224 ~~~p-~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~k-ng~~i~~  266 (326)
T PHA02785        224 MQLP-EGVVTSIGSNLTIACRVSLRPPTTDADVFWIS-NGMYYEE  266 (326)
T ss_pred             ecCC-CcEEecCCCcEEEEEEEECCCCCCCceEEEEE-CCEECCC
Confidence            4554 55666778889999999999974   899996 8888754

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=97.84  E-value=3.2e-05  Score=40.73  Aligned_cols=28  Identities=32%  Similarity=0.851  Sum_probs=23.8

Q ss_pred             CCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         34 TTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      |+.+.|.|.+.|.|.|++.|++ +|..+.
T Consensus         2 g~~~~l~C~~~~~~~~~v~W~~-~~~~~~   29 (63)
T smart00408        2 GQSVTLTCPAEGDPVPNITWLK-DGKPLP   29 (63)
T ss_pred             CceEEEEeeCccCCCCeEEEEE-CCEECC
Confidence            5679999999999999999997 666554

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=97.80  E-value=3.9e-05  Score=46.78  Aligned_cols=29  Identities=17%  Similarity=0.348  Sum_probs=24.6

Q ss_pred             ecCCCCeEEEEEEcc-----cCCCeEEEEeCCCee
Q psy11558         31 FSNTTGAQVECTARG-----SPNPEIIWIRSDGTA   60 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G-----~P~P~I~W~~~dG~~   60 (74)
                      ..+|+.+.|.|.+.|     +|.|+|+|+++ |..
T Consensus        11 v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~-~~~   44 (94)
T cd05756          11 VLEGEPVVIKCPLFYSYIAQSPGLNLTWYKS-DGK   44 (94)
T ss_pred             EecCCCeEEECCCCCcccccCCCceEEEEEc-CCC
Confidence            457888999999999     79999999984 544

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=97.79  E-value=4.4e-05  Score=47.55  Aligned_cols=40  Identities=15%  Similarity=0.290  Sum_probs=31.2

Q ss_pred             EEEcCCCcEEecCCCCeEEEEE-EcccCCCeEEEEeCCCeee
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECT-ARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~-A~G~P~P~I~W~~~dG~~i   61 (74)
                      |..++.+.+.+.+|++++|+|. -.|.|.|+++|++ |+.++
T Consensus         5 f~~~~~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k-~~~~~   45 (96)
T cd05727           5 FPLEERDEVKVKEGWGVVLFCDPPPHYPDLSYRWLL-NEFPN   45 (96)
T ss_pred             cCcCCcCceeeeeCCcEEEeeCCCCCCCCCEEEEEE-CCccc
Confidence            4455566667788999999994 5699999999997 66653

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=97.77  E-value=2.8e-05  Score=45.51  Aligned_cols=24  Identities=13%  Similarity=0.292  Sum_probs=20.7

Q ss_pred             CCCeEEEEEEccc--CCCeEEEEeCC
Q psy11558         34 TTGAQVECTARGS--PNPEIIWIRSD   57 (74)
Q Consensus        34 g~~v~L~C~A~G~--P~P~I~W~~~d   57 (74)
                      |+.++|.|.|.|+  |.|.|+|.+++
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~   26 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPG   26 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCC
Confidence            4579999999999  89999998643

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=97.73  E-value=9.8e-05  Score=51.77  Aligned_cols=38  Identities=13%  Similarity=0.335  Sum_probs=29.2

Q ss_pred             CCcEEecCCCCeEEEEEEc-----ccCCCeEEEEeCCCeeecCC
Q psy11558         26 PNRIDFSNTTGAQVECTAR-----GSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~-----G~P~P~I~W~~~dG~~i~~~   64 (74)
                      +....+..|+.+.|.|.|.     |.|.|+|+|++ ||.+|...
T Consensus       136 ~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyK-ng~~l~~~  178 (227)
T PHA02826        136 TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYK-NGNIVLYT  178 (227)
T ss_pred             CccceEecCCCEEEEeeCCCCccccCCCceEEEEE-CCEECCCC
Confidence            3444566788899999997     45789999997 88887543

>smart00409 IG Immunoglobulin

Probab=97.70  E-value=0.00032  Score=38.48  Aligned_cols=35  Identities=23%  Similarity=0.668  Sum_probs=28.5

Q ss_pred             cEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         28 RIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        28 ~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      .+....|+.+.|.|.+.+.+.+++.|.+.++..+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~   37 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA   37 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC
Confidence            34566788899999999999999999986466654

>smart00410 IG_like Immunoglobulin like

Probab=97.70  E-value=0.00032  Score=38.48  Aligned_cols=35  Identities=23%  Similarity=0.668  Sum_probs=28.5

Q ss_pred             cEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         28 RIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        28 ~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      .+....|+.+.|.|.+.+.+.+++.|.+.++..+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~   37 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA   37 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC
Confidence            34566788899999999999999999986466654

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=97.69  E-value=8.4e-05  Score=44.05  Aligned_cols=24  Identities=17%  Similarity=0.430  Sum_probs=21.1

Q ss_pred             CCCeEEEEEEcccCCCeEEEEeCC
Q psy11558         34 TTGAQVECTARGSPNPEIIWIRSD   57 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P~I~W~~~d   57 (74)
                      |+.++|.|.|.|+|.|.++|...+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~   24 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPG   24 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECC
Confidence            567999999999999999999643

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=97.60  E-value=0.00017  Score=44.45  Aligned_cols=31  Identities=19%  Similarity=0.289  Sum_probs=25.4

Q ss_pred             EEecCCCCeEEEEEEcccCCCeEEEEeCCCe
Q psy11558         29 IDFSNTTGAQVECTARGSPNPEIIWIRSDGT   59 (74)
Q Consensus        29 v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~   59 (74)
                      |....|+.|+|.|.++|.|.|.|.|++++..
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k   32 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQI   32 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcE
Confidence            3455788899999999999999999875434

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=97.60  E-value=0.00011  Score=44.46  Aligned_cols=27  Identities=22%  Similarity=0.599  Sum_probs=22.9

Q ss_pred             eEEEEEEc-ccCCCeEEEEeCCCeeecCC
Q psy11558         37 AQVECTAR-GSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        37 v~L~C~A~-G~P~P~I~W~~~dG~~i~~~   64 (74)
                      +.|.|.+. |+|+|+|+|++ ||.+|...
T Consensus         2 ~~L~C~s~~skP~a~i~W~k-~~~~l~~~   29 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYR-DRKELKGV   29 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEE-CCEECCCC
Confidence            68999987 78999999997 88888654

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=97.59  E-value=0.00012  Score=43.15  Aligned_cols=26  Identities=27%  Similarity=0.709  Sum_probs=21.7

Q ss_pred             eEEEEEEccc-CCCeEEEEeCCCeeecC
Q psy11558         37 AQVECTARGS-PNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        37 v~L~C~A~G~-P~P~I~W~~~dG~~i~~   63 (74)
                      +.|.|.|.|. |.|+|+|++ ||..+..
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~-~~~~l~~   28 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFK-GDKELKG   28 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEE-CCEEccC
Confidence            6899999875 999999996 6777653

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=97.59  E-value=0.00018  Score=43.60  Aligned_cols=26  Identities=15%  Similarity=0.349  Sum_probs=22.6

Q ss_pred             CeEEEEEEcc--cCCCeEEEEeCCCeeec
Q psy11558         36 GAQVECTARG--SPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        36 ~v~L~C~A~G--~P~P~I~W~~~dG~~i~   62 (74)
                      ++.|.|.|.+  ++.++|+|++ ||.+|.
T Consensus         2 ~~~l~C~v~~d~~l~~~~~W~~-dg~~i~   29 (85)
T cd05853           2 SIVLPCQVSHDHSLDIVFTWSF-NGHLID   29 (85)
T ss_pred             cEEEEEEeccCCCCCcEEEEEE-CCEECc
Confidence            5899999988  5599999996 899986

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=97.55  E-value=0.00036  Score=43.41  Aligned_cols=43  Identities=21%  Similarity=0.400  Sum_probs=30.5

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCe-EEEEeCCCeeecC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPE-IIWIRSDGTAVGD   63 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~-I~W~~~dG~~i~~   63 (74)
                      +|.+..+  .......|+.+.|.|.|.+.|+|. |.|.. ++..|+.
T Consensus         2 pP~i~~~--~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w-~~~~i~~   45 (98)
T cd05898           2 PPIISSE--QVQYAVRGERGKVKCFIGSTPPPDRIAWAW-KENVLES   45 (98)
T ss_pred             CCEEecC--ceEEEeCCCcEEEEEEEccCCCCcEEEEEE-ccccccC
Confidence            5666444  334466888999999999999885 68876 4555544

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=97.53  E-value=0.00011  Score=42.11  Aligned_cols=26  Identities=19%  Similarity=0.638  Sum_probs=21.3

Q ss_pred             eEEEEEEcc-cCCCeEEEEeCCCeeecC
Q psy11558         37 AQVECTARG-SPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        37 v~L~C~A~G-~P~P~I~W~~~dG~~i~~   63 (74)
                      +.|.|.|.| .|.|+++|++ ||..+..
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~-~g~~i~~   27 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFK-NGKEIGA   27 (76)
T ss_pred             CEEEEecccCCCCCceEEEE-CCccccc
Confidence            479999985 7899999997 7887753

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.50  E-value=0.00019  Score=42.80  Aligned_cols=26  Identities=31%  Similarity=0.718  Sum_probs=21.9

Q ss_pred             eEEEEEEccc-CCCeEEEEeCCCeeecC
Q psy11558         37 AQVECTARGS-PNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        37 v~L~C~A~G~-P~P~I~W~~~dG~~i~~   63 (74)
                      +.|.|.|.|. |.++|+|++ ||..+..
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k-~g~~l~~   28 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRK-GDQELEG   28 (83)
T ss_pred             EEEEEEecCccCCCEeEEEE-CCEECCC
Confidence            6899999996 999999996 7776654

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd00098 IgC Immunoglobulin Constant domain

Probab=97.47  E-value=0.00022  Score=41.99  Aligned_cols=31  Identities=19%  Similarity=0.531  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEEccc-C-CCeEEEEeCCCeeecCC
Q psy11558         33 NTTGAQVECTARGS-P-NPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        33 ~g~~v~L~C~A~G~-P-~P~I~W~~~dG~~i~~~   64 (74)
                      .|..+.|.|.|.|. | .++|+|.+ ||..+...
T Consensus        12 ~~~~~~L~C~a~g~~P~~~~i~W~~-~g~~~~~~   44 (95)
T cd00098          12 LGGSVTLTCLATGFYPPDITVTWLK-NGKELTSG   44 (95)
T ss_pred             cCCCeEEEEEEeeEECCCcEEEEEE-CCEECCCc
Confidence            46679999999998 6 46899997 78876543

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=97.44  E-value=0.00017  Score=39.65  Aligned_cols=27  Identities=15%  Similarity=0.582  Sum_probs=23.0

Q ss_pred             CCCeEEEEEE-cccCCCeEEEEeCCCee
Q psy11558         34 TTGAQVECTA-RGSPNPEIIWIRSDGTA   60 (74)
Q Consensus        34 g~~v~L~C~A-~G~P~P~I~W~~~dG~~   60 (74)
                      |+++.|.|.+ .+.|.+.++|.++++..
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~   28 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSL   28 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTT
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccc
Confidence            5679999999 99999999999866543

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.40  E-value=0.00034  Score=43.40  Aligned_cols=36  Identities=25%  Similarity=0.622  Sum_probs=25.0

Q ss_pred             CCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558         26 PNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~   62 (74)
                      |.......+..++|.|.|+| .|+. +|+|.+ ||.++.
T Consensus         8 p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k-~g~~~~   45 (102)
T cd05768           8 PPSEELSLQETATLTCLVKGFSPSDIFVKWLQ-NGQPLS   45 (102)
T ss_pred             cChHHhCcCCceEEEEEEeeEeCCCCEEEEEE-CCEECC
Confidence            33333444567999999999 5544 469996 787764

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.39  E-value=0.00041  Score=40.72  Aligned_cols=27  Identities=26%  Similarity=0.688  Sum_probs=20.3

Q ss_pred             CCCeEEEE-EEcccCCCeEEEEeCCCee
Q psy11558         34 TTGAQVEC-TARGSPNPEIIWIRSDGTA   60 (74)
Q Consensus        34 g~~v~L~C-~A~G~P~P~I~W~~~dG~~   60 (74)
                      |+.+.+.| ...|+|+|+|+|..+++..
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~   41 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPV   41 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCce
Confidence            56799999 5568999999999754443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.38  E-value=0.00033  Score=41.93  Aligned_cols=26  Identities=27%  Similarity=0.786  Sum_probs=22.0

Q ss_pred             eEEEEEEcc-cCCCeEEEEeCCCeeecC
Q psy11558         37 AQVECTARG-SPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        37 v~L~C~A~G-~P~P~I~W~~~dG~~i~~   63 (74)
                      +.|.|.|.| +|..+|+|++ ||..+..
T Consensus         2 ~~LtC~a~gf~P~~~itW~k-ng~~l~~   28 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFK-NDKEIKD   28 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEE-CCEECcC
Confidence            689999998 8999999997 7877644

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.37  E-value=0.00057  Score=40.49  Aligned_cols=36  Identities=22%  Similarity=0.419  Sum_probs=27.1

Q ss_pred             CCCcEEecCCCCeEEEEEEc-ccCCCeEEEEeCCCeeec
Q psy11558         25 PPNRIDFSNTTGAQVECTAR-GSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        25 Pp~~v~~~~g~~v~L~C~A~-G~P~P~I~W~~~dG~~i~   62 (74)
                      +|..+ +.+|+.++|.|.+. |.|.+++.|.+ ||..+.
T Consensus         6 ~p~~~-V~~G~~vtL~C~~~~~~~~~~~~w~k-~g~~~~   42 (83)
T cd05753           6 VPSRV-VFEGEPLVLRCHGWKNKPVYKVTYYR-DGKAKK   42 (83)
T ss_pred             CCcce-ecCCCCEEEEeeCCCCCcceEEEEEE-CCeEcc
Confidence            34443 56788899999995 57888999997 666654

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.36  E-value=0.0013  Score=40.24  Aligned_cols=32  Identities=16%  Similarity=0.441  Sum_probs=26.8

Q ss_pred             CCCcEEecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558         25 PPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD   57 (74)
Q Consensus        25 Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~d   57 (74)
                      +|..+.+.+|+.++|.|.+.+ +.+.|.|++.+
T Consensus         4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~   35 (110)
T cd05899           4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQD   35 (110)
T ss_pred             CCCceEEcCCCcEEEEEEECC-CCCEEEEEEEC
Confidence            355566788999999999999 88999998753

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.31  E-value=0.00046  Score=44.08  Aligned_cols=44  Identities=27%  Similarity=0.539  Sum_probs=30.6

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~   62 (74)
                      +|....-||+..++..++.++|.|.|.| .|.. +|+|++ ||..+.
T Consensus         2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~k-ng~~l~   47 (115)
T cd05769           2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKV-NGKEVT   47 (115)
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEE-CCEECC
Confidence            3544444666655555556999999999 5764 889997 777654

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=97.30  E-value=0.00028  Score=38.79  Aligned_cols=35  Identities=31%  Similarity=0.692  Sum_probs=27.4

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccC-CCeEEEE
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSP-NPEIIWI   54 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P-~P~I~W~   54 (74)
                      +|.+...+...+ ...++ +.|.|.|.|.| .++++|.
T Consensus         1 kP~I~~~~~~~~-~~~~~-~~l~C~~~~~~~~~~~~W~   36 (75)
T PF13927_consen    1 KPQISVPPPPVV-TSGGS-VTLTCSAEGGPPPPSISWY   36 (75)
T ss_dssp             ESEEEEESTSEE-ETTEE-EEEEEEESSEESSEEEEEE
T ss_pred             CCEEEEcCCCcE-eecee-EEEEEEEccccCCeEEEEE
Confidence            477777766554 33333 99999999999 9999999

...

>KOG4221|consensus

Probab=97.29  E-value=0.00021  Score=60.46  Aligned_cols=46  Identities=24%  Similarity=0.546  Sum_probs=37.9

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      ..+|.|+..|...+ .-++.++.|.|.++|.|.|+++|++ ||..+..
T Consensus       326 ~a~P~~~~~p~~l~-A~e~~die~ec~~~g~p~p~v~w~k-Ngd~~ip  371 (1381)
T KOG4221|consen  326 LAPPGFTKAPTTLV-AHESMDIEFECPVSGKPIPTVRWYK-NGDRIIP  371 (1381)
T ss_pred             EcCCCCCCCCccee-eeeccceeEeCCCCCCCcceEEEEe-cCcccCc
Confidence            56899999976655 4457789999999999999999996 7877655

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.28  E-value=0.0011  Score=42.23  Aligned_cols=40  Identities=15%  Similarity=0.142  Sum_probs=27.1

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEccc-CC-CeEEEEeCC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGS-PN-PEIIWIRSD   57 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~-P~I~W~~~d   57 (74)
                      .+|.....|... ....|..++|.|.|.|. |+ ++|+|++++
T Consensus        37 ~~P~v~~~~~~~-~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g   78 (139)
T cd05771          37 EPPRVRLSLEKL-VSMIEEPQTLICHIAGYYPLDVQVEWTREP   78 (139)
T ss_pred             cCCceEEeCCCc-eeecCCcEEEEEEECCCCCCCeEEEEEECC
Confidence            456665554433 23356679999999996 54 489999743

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=97.28  E-value=0.00066  Score=40.97  Aligned_cols=33  Identities=15%  Similarity=0.413  Sum_probs=28.7

Q ss_pred             cCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         24 EPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        24 ~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      .+|..+....|++|.|.|.+.+.+.+.+.|++.
T Consensus         3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~   35 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQ   35 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEECCCCccEEEEEEE
Confidence            456677788999999999999999999999974

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=97.18  E-value=0.00069  Score=40.98  Aligned_cols=27  Identities=19%  Similarity=0.436  Sum_probs=22.3

Q ss_pred             EEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         29 IDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        29 v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      +...+|+.+.|+|.+ +.|.|.|+|++.
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq   32 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQ   32 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEE
Confidence            345578889999997 699999999973

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>KOG4222|consensus

Probab=97.18  E-value=0.00034  Score=58.94  Aligned_cols=45  Identities=20%  Similarity=0.482  Sum_probs=37.7

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      ..+|.|...|.++.... |+.++|+|.+.|+|+|.+.|+++++..+
T Consensus       313 ~apP~f~kkp~dq~v~l-g~~vt~pc~~~gnP~PavfW~keg~q~l  357 (1281)
T KOG4222|consen  313 QAPPSFGKKPRDQKVAL-GGTVTFPCETLGNPPPAVFWLKEGSQDL  357 (1281)
T ss_pred             ecCcccccccCcccccc-CceEEeeeecCCCCCcceEEeccCccee
Confidence            57889999988776554 4569999999999999999998777654

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.17  E-value=0.001  Score=42.05  Aligned_cols=31  Identities=23%  Similarity=0.667  Sum_probs=24.2

Q ss_pred             cCCCCeEEEEEEcc-cCC-CeEEEEeCCCeeecC
Q psy11558         32 SNTTGAQVECTARG-SPN-PEIIWIRSDGTAVGD   63 (74)
Q Consensus        32 ~~g~~v~L~C~A~G-~P~-P~I~W~~~dG~~i~~   63 (74)
                      ..|..++|.|.|.| .|+ -+|+|++ ||..+..
T Consensus        19 ~~g~~~tL~C~a~gF~P~~i~v~W~k-ng~~~~~   51 (111)
T cd05772          19 NPGQSVNFTCSAHGFSPRDITVKWLK-NGNELSA   51 (111)
T ss_pred             CCCCCEEEEEEEeeEeCCCCEEEEEE-CCEECcc
Confidence            35566999999999 564 5899997 8888653

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.13  E-value=0.0015  Score=39.25  Aligned_cols=25  Identities=36%  Similarity=0.846  Sum_probs=20.0

Q ss_pred             CCCeEEEEEEccc-CCC-eEEEEeCCCe
Q psy11558         34 TTGAQVECTARGS-PNP-EIIWIRSDGT   59 (74)
Q Consensus        34 g~~v~L~C~A~G~-P~P-~I~W~~~dG~   59 (74)
                      ++.+.|.|.|.|- |++ +|+|++ ||.
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~-~g~   40 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLR-DGE   40 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEE-CCE
Confidence            4569999999995 655 899997 564

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=97.10  E-value=0.004  Score=37.80  Aligned_cols=34  Identities=21%  Similarity=0.447  Sum_probs=27.5

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccC-CCeEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSP-NPEIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P-~P~I~W~~~   56 (74)
                      .+. |..+...+|++|+|.|.+.+.+ ...+.|++.
T Consensus         4 ~Q~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq   38 (106)
T cd04980           4 TQS-PATLSVSPGESATISCKASQSVSSNYLAWYQQ   38 (106)
T ss_pred             EEC-CCcEEECCCCCEEEEEEECCCCCCCcEEEEEE
Confidence            455 4555678899999999999887 788999874

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.04  E-value=0.0012  Score=40.60  Aligned_cols=43  Identities=23%  Similarity=0.466  Sum_probs=29.2

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcc-cC-CCeEEEEeCCCeeec
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARG-SP-NPEIIWIRSDGTAVG   62 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P-~P~I~W~~~dG~~i~   62 (74)
                      |.....||.......+..++|.|.|.| .| .-+|+|++ ||..+.
T Consensus         2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~-~g~~~~   46 (100)
T cd07699           2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKV-DGATVS   46 (100)
T ss_pred             CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEE-CCEECc
Confidence            433344444433434556999999999 67 66789996 888764

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=97.04  E-value=0.001  Score=40.52  Aligned_cols=33  Identities=18%  Similarity=0.441  Sum_probs=25.9

Q ss_pred             ecCCCCeEEEEEEccc-----CCCeEEEEeCCCeeecCC
Q psy11558         31 FSNTTGAQVECTARGS-----PNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~-----P~P~I~W~~~dG~~i~~~   64 (74)
                      ...|++++|.|.+.+.     |.|+|+|++ ||.++...
T Consensus         7 ~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk-~~~~i~~~   44 (92)
T cd05757           7 LFSTKGGKIVCPDLDDFKNENTLPPVQWYK-DCKLLEGD   44 (92)
T ss_pred             EeeccCCEEECCChHHccCCCCCCcEEEeE-CCEECCCC
Confidence            4467789999998763     689999996 88887643

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=96.99  E-value=0.0044  Score=38.01  Aligned_cols=31  Identities=19%  Similarity=0.407  Sum_probs=26.4

Q ss_pred             CCcEEecCCCCeEEEEEEcc--cCCCeEEEEeC
Q psy11558         26 PNRIDFSNTTGAQVECTARG--SPNPEIIWIRS   56 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G--~P~P~I~W~~~   56 (74)
                      |..+....|+.+.|.|.+.+  .+.+.+.|++.
T Consensus         5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq   37 (116)
T cd04982           5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQ   37 (116)
T ss_pred             CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEE
Confidence            45556778889999999998  78999999985

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=96.98  E-value=0.0029  Score=38.57  Aligned_cols=30  Identities=17%  Similarity=0.468  Sum_probs=23.9

Q ss_pred             CCCCeEEEEEEcc-cCCC-eEEEEeCCCeeecC
Q psy11558         33 NTTGAQVECTARG-SPNP-EIIWIRSDGTAVGD   63 (74)
Q Consensus        33 ~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~~   63 (74)
                      .+..++|.|.|.| .|+. +++|.+ ||+.+..
T Consensus        13 ~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~~   44 (94)
T cd05766          13 LSHPHLLVCHVWGFYPPEITVKWFK-NGQEETE   44 (94)
T ss_pred             CCCCeEEEEEEeeecCCCCEEEEEE-CCeecCC
Confidence            3567999999999 7866 789996 8877644

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=96.96  E-value=0.0015  Score=39.62  Aligned_cols=26  Identities=23%  Similarity=0.607  Sum_probs=21.4

Q ss_pred             eEEEEEEcc-cCCCeEEEEeCCCeeecC
Q psy11558         37 AQVECTARG-SPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        37 v~L~C~A~G-~P~P~I~W~~~dG~~i~~   63 (74)
                      +.|.|.+.| .|.++|+|.+ ||.++..
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k-~~~~l~~   28 (82)
T cd05883           2 IELNCTAMASKPAATIRWFK-GNKELTG   28 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEE-CCEECcC
Confidence            689999986 5999999996 7777654

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.71  E-value=0.006  Score=38.20  Aligned_cols=31  Identities=13%  Similarity=0.451  Sum_probs=25.0

Q ss_pred             cCCCCeEEEEEEcc-cCCCe--EEEEeCCCeeecC
Q psy11558         32 SNTTGAQVECTARG-SPNPE--IIWIRSDGTAVGD   63 (74)
Q Consensus        32 ~~g~~v~L~C~A~G-~P~P~--I~W~~~dG~~i~~   63 (74)
                      .+|....|.|.+.| .|.++  |+|++ ++..+..
T Consensus        14 ~eG~~~tL~C~v~g~~P~a~L~i~W~r-G~~~l~~   47 (100)
T cd05755          14 PVGKNYTLQCDVPGVAPRQNLTVVLLR-GNETLSR   47 (100)
T ss_pred             cCCCcEEEEEEEcCcCCCCcEEEEEee-CCEEccc
Confidence            57888999999997 78887  79997 6666654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=96.71  E-value=0.0034  Score=38.13  Aligned_cols=35  Identities=14%  Similarity=0.383  Sum_probs=28.1

Q ss_pred             CcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         27 NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        27 ~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      ..+.+..|+++.|.|...+. ..+++|.+ ||.++..
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~-ng~~l~~   38 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLF-NGTPLNA   38 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEE-CCcccCC
Confidence            34566778899999999995 77999997 7877754

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=96.67  E-value=0.0035  Score=36.23  Aligned_cols=24  Identities=33%  Similarity=0.786  Sum_probs=19.8

Q ss_pred             eEEEEEEccc-CC-CeEEEEeCCCeee
Q psy11558         37 AQVECTARGS-PN-PEIIWIRSDGTAV   61 (74)
Q Consensus        37 v~L~C~A~G~-P~-P~I~W~~~dG~~i   61 (74)
                      ++|.|.|.|. |+ .+|+|++ ||.++
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k-~g~~~   27 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLR-NGQEV   27 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEE-CCEEC
Confidence            6899999996 55 6999997 78763

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=96.54  E-value=0.0091  Score=36.86  Aligned_cols=35  Identities=9%  Similarity=0.242  Sum_probs=29.1

Q ss_pred             CCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCee
Q psy11558         26 PNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTA   60 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~   60 (74)
                      -+.+...+|+++.|.|.+++.....+.|++.+...
T Consensus         4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~   38 (95)
T cd05881           4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQT   38 (95)
T ss_pred             cCceEEcCCCcEEEEEEEccCCccEEEEEecCCcE
Confidence            35577889999999999999999999999766443

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.42  E-value=0.0036  Score=36.66  Aligned_cols=29  Identities=21%  Similarity=0.673  Sum_probs=22.8

Q ss_pred             CCCeEEEEEEcc-cCCC-eEEEEeCCCeeecC
Q psy11558         34 TTGAQVECTARG-SPNP-EIIWIRSDGTAVGD   63 (74)
Q Consensus        34 g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~~   63 (74)
                      +..+.|.|.|.| .|.. +|+|.+ ||..+..
T Consensus         8 ~~~~~L~C~v~~f~P~~i~v~W~~-~~~~~~~   38 (83)
T PF07654_consen    8 GGSVTLTCLVSGFYPKDITVTWLK-NGKEVTE   38 (83)
T ss_dssp             TSEEEEEEEEEEEBSSTEEEEEEE-TTEEETT
T ss_pred             CCCEEEEEEEEEEECCCcEEEEEe-ccceeee
Confidence            556999999999 6766 699986 7876643

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.29  E-value=0.0056  Score=37.63  Aligned_cols=35  Identities=20%  Similarity=0.511  Sum_probs=24.5

Q ss_pred             CCcEEecCCCCeEEEEEEccc--C-CCeEEEEeCCCee
Q psy11558         26 PNRIDFSNTTGAQVECTARGS--P-NPEIIWIRSDGTA   60 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~--P-~P~I~W~~~dG~~   60 (74)
                      |+.-++..+..++|.|.|.|-  | .=+|+|++++|..
T Consensus         6 Ps~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~   43 (96)
T cd07696           6 PSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEP   43 (96)
T ss_pred             cCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEe
Confidence            333334456679999999999  5 4457999865554

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=96.28  E-value=0.0075  Score=35.82  Aligned_cols=26  Identities=23%  Similarity=0.354  Sum_probs=20.3

Q ss_pred             CCCeEEEEEEcccCCC--eEEEEeCCCe
Q psy11558         34 TTGAQVECTARGSPNP--EIIWIRSDGT   59 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P--~I~W~~~dG~   59 (74)
                      |+.++|.|.|.|+|.|  .++|..+++.
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~   28 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKK   28 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcc
Confidence            5679999999998755  6799875543

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>KOG4194|consensus

Probab=96.04  E-value=0.0052  Score=49.91  Aligned_cols=42  Identities=21%  Similarity=0.435  Sum_probs=31.4

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCC-CeEEEEeCCCe
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPN-PEIIWIRSDGT   59 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~-P~I~W~~~dG~   59 (74)
                      +.|.|..-.... .+..|+.++|.|.|.|.|. |.+.|++.|+.
T Consensus       705 e~p~f~~PL~~~-~V~~get~vlqC~a~~~~a~pr~~W~k~d~p  747 (873)
T KOG4194|consen  705 ETPSFSIPLEDQ-LVVVGETLVLQCLAEGAPADPRLEWFKEDKP  747 (873)
T ss_pred             cCCcccccccce-EEEecceEEEEEecCCCCCCccccccCCCCc
Confidence            445555443333 4567888999999999998 99999986664

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=95.99  E-value=0.012  Score=35.99  Aligned_cols=27  Identities=30%  Similarity=0.672  Sum_probs=21.3

Q ss_pred             CCCeEEEEEEcc-cCC-CeEEEEeCCCeee
Q psy11558         34 TTGAQVECTARG-SPN-PEIIWIRSDGTAV   61 (74)
Q Consensus        34 g~~v~L~C~A~G-~P~-P~I~W~~~dG~~i   61 (74)
                      +..+.|.|.|.| .|. =+|+|.+ ||..+
T Consensus        14 ~~~~~L~C~a~gFyP~~I~vtW~~-dg~~~   42 (94)
T cd05847          14 SETIQLLCLISGYTPGTIEVEWLV-DGQVA   42 (94)
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEE-CCEEC
Confidence            345999999999 664 5689996 78775

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=95.87  E-value=0.011  Score=41.43  Aligned_cols=32  Identities=13%  Similarity=0.268  Sum_probs=26.1

Q ss_pred             CCcEEecCCCCeEEEEEEcccCCC-----------eEEEEeCC
Q psy11558         26 PNRIDFSNTTGAQVECTARGSPNP-----------EIIWIRSD   57 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~P~P-----------~I~W~~~d   57 (74)
                      ...+.+.+|+++.|.|.+.|.|+|           +|.|.+.|
T Consensus        29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~   71 (227)
T PHA02826         29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTD   71 (227)
T ss_pred             cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCC
Confidence            455667789999999999997655           99999854

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=95.80  E-value=0.036  Score=33.05  Aligned_cols=27  Identities=15%  Similarity=0.378  Sum_probs=22.5

Q ss_pred             ecCCCCeEEEEEEccc--CCCeEEEEeCC
Q psy11558         31 FSNTTGAQVECTARGS--PNPEIIWIRSD   57 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~--P~P~I~W~~~d   57 (74)
                      +..|++|+|.|.+++.  ....|.|++.+
T Consensus         3 v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~   31 (98)
T cd04984           3 VSPGETVTITCTGSSGNISGNYVNWYQQK   31 (98)
T ss_pred             cCCCCCEEEEEEEcCCCcCCCCEEEEEEC
Confidence            5678899999999986  67889998753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=95.72  E-value=0.021  Score=33.79  Aligned_cols=28  Identities=29%  Similarity=0.534  Sum_probs=23.7

Q ss_pred             EecCCCCeEEEEEEccc-CCCeEEEEeCC
Q psy11558         30 DFSNTTGAQVECTARGS-PNPEIIWIRSD   57 (74)
Q Consensus        30 ~~~~g~~v~L~C~A~G~-P~P~I~W~~~d   57 (74)
                      .+..|+.+.|.|.+.+. +...+.|.+.+
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~   30 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQK   30 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEEC
Confidence            35678889999999998 88999999853

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=95.55  E-value=0.055  Score=33.13  Aligned_cols=29  Identities=21%  Similarity=0.533  Sum_probs=22.0

Q ss_pred             CCCeEEEEEEcc-cCC-CeEEEEeCCCeeecC
Q psy11558         34 TTGAQVECTARG-SPN-PEIIWIRSDGTAVGD   63 (74)
Q Consensus        34 g~~v~L~C~A~G-~P~-P~I~W~~~dG~~i~~   63 (74)
                      +..++|.|.|.| .|. =+|+|++ ||.++..
T Consensus        15 ~~~~tL~C~a~gFyP~~I~v~W~~-~g~~~~~   45 (94)
T cd05767          15 GEPNTLICFVDNFFPPVLNVTWLK-NGVPVTD   45 (94)
T ss_pred             CCCeEEEEEEEEEECCcCEEEEEE-CCeEccC
Confidence            445899999999 774 4579996 7887643

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>PHA02785 IL-beta-binding protein; Provisional

Probab=95.49  E-value=0.014  Score=42.48  Aligned_cols=27  Identities=15%  Similarity=0.385  Sum_probs=23.0

Q ss_pred             cCCCCeEEEEEE-----cccCCCeEEEEeCCC
Q psy11558         32 SNTTGAQVECTA-----RGSPNPEIIWIRSDG   58 (74)
Q Consensus        32 ~~g~~v~L~C~A-----~G~P~P~I~W~~~dG   58 (74)
                      .+|+.+.|.|.+     .|.|.|+|+|.++++
T Consensus        39 ~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~   70 (326)
T PHA02785         39 LENEPVILPCPQINTLSSGYNILDILWEKRGA   70 (326)
T ss_pred             hcCCCEEEECCCccccccCCCCceEEEEECCC
Confidence            467889999997     899999999998543

>cd00096 Ig Immunoglobulin domain

Probab=95.48  E-value=0.02  Score=29.15  Aligned_cols=23  Identities=35%  Similarity=0.980  Sum_probs=19.2

Q ss_pred             eEEEEEEcccCCCeEEEEeCCCee
Q psy11558         37 AQVECTARGSPNPEIIWIRSDGTA   60 (74)
Q Consensus        37 v~L~C~A~G~P~P~I~W~~~dG~~   60 (74)
                      +.|.|.+.+.|.+.+.|.+ ++..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~-~~~~   23 (74)
T cd00096           1 VTLTCLASGPPPPTITWLK-NGKP   23 (74)
T ss_pred             CEEEEEecCCCCCcEEEEE-CCEE
Confidence            4789999999999999997 4443

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=95.43  E-value=0.019  Score=35.52  Aligned_cols=31  Identities=10%  Similarity=0.221  Sum_probs=22.3

Q ss_pred             ecCCCCeEEEEEEcc-cCC-CeEEEEeCCCeeec
Q psy11558         31 FSNTTGAQVECTARG-SPN-PEIIWIRSDGTAVG   62 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G-~P~-P~I~W~~~dG~~i~   62 (74)
                      ...+..++|.|.|.| .|. =+|+|++ ||..+.
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~I~v~W~k-ng~~~~   45 (96)
T cd07697          13 IEKQGQGIYLCLLENFFPDVIQVHWRE-GNSPSI   45 (96)
T ss_pred             HccCCCEEEEEEEEEEeCCCeEEEEEE-CCEECc
Confidence            333445999999999 663 3479986 887753

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=95.34  E-value=0.047  Score=33.51  Aligned_cols=34  Identities=15%  Similarity=0.316  Sum_probs=26.5

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEccc-CCCeEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGS-PNPEIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~-P~P~I~W~~~   56 (74)
                      ++. +..+....|++|.|+|...+. ....+.|++.
T Consensus         3 ~q~-~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq   37 (116)
T cd07706           3 TQA-QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQ   37 (116)
T ss_pred             EEe-CCceEEcCCCCEEEEEEEeCCCCceEEEEEEE
Confidence            344 556668889999999999874 5678999985

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=95.26  E-value=0.073  Score=31.62  Aligned_cols=39  Identities=18%  Similarity=0.317  Sum_probs=29.2

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCee
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTA   60 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~   60 (74)
                      .|.+..+|. .+ +..|+.|+|.|.+. .|...+.|.+ ||..
T Consensus         2 kP~L~a~p~-~v-V~~G~~VtL~C~~~-~~~~~f~l~k-~g~~   40 (91)
T cd05751           2 KPSLWAEPS-SV-VPLGKPVTLRCQGP-YGAVEYRLYR-EGST   40 (91)
T ss_pred             CCEEEecCC-Cc-cCCCCcEEEEEecC-CCCCEEEEEE-CCCC
Confidence            467777754 33 56788899999997 6899999986 5553

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=95.23  E-value=0.05  Score=33.96  Aligned_cols=32  Identities=22%  Similarity=0.617  Sum_probs=22.5

Q ss_pred             CCCcEEecCCCCeEE-EEE-EcccCCCeEEEEeC
Q psy11558         25 PPNRIDFSNTTGAQV-ECT-ARGSPNPEIIWIRS   56 (74)
Q Consensus        25 Pp~~v~~~~g~~v~L-~C~-A~G~P~P~I~W~~~   56 (74)
                      |...+...+|.++.+ .|. |.|.|.++|+|..+
T Consensus         7 ~~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~   40 (97)
T cd07704           7 PGPSLLIDGGNGTTLAACCAAEGRPAADVTWETN   40 (97)
T ss_pred             CCCeeEeecCcceeEEEEEccCCccCCEeEEeCC
Confidence            344455556666666 665 55999999999964

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=95.18  E-value=0.057  Score=34.06  Aligned_cols=35  Identities=17%  Similarity=0.248  Sum_probs=28.7

Q ss_pred             CcEEecCCCCeEEEEEEcccCCCe-EEEEeCCCeeec
Q psy11558         27 NRIDFSNTTGAQVECTARGSPNPE-IIWIRSDGTAVG   62 (74)
Q Consensus        27 ~~v~~~~g~~v~L~C~A~G~P~P~-I~W~~~dG~~i~   62 (74)
                      ..+.+..|+++.|.|.....|+|+ +.|.+ ++..+.
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~-~~~~l~   46 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIY-MNRTLT   46 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEc-CCcccC
Confidence            355677899999999999999998 99996 555443

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=94.84  E-value=0.066  Score=32.82  Aligned_cols=29  Identities=24%  Similarity=0.519  Sum_probs=21.7

Q ss_pred             CCCCeEEEEEEcc-cC-CCeEEEEeCCCeeec
Q psy11558         33 NTTGAQVECTARG-SP-NPEIIWIRSDGTAVG   62 (74)
Q Consensus        33 ~g~~v~L~C~A~G-~P-~P~I~W~~~dG~~i~   62 (74)
                      .|...+|.|.|.| .| .=+|+|++ ||+++.
T Consensus        14 ~g~~~~L~C~a~gFyP~~i~v~W~~-dg~~~~   44 (93)
T cd05770          14 NGKPNVLNCYVTGFHPPDIEIRLLK-NGVKIP   44 (93)
T ss_pred             CCCceEEEEEEEEEeCCCCEEEEEE-CCEECC
Confidence            3445799999999 56 34579986 888764

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=94.70  E-value=0.058  Score=31.55  Aligned_cols=33  Identities=18%  Similarity=0.568  Sum_probs=28.0

Q ss_pred             cCCCcEEecCCCCeEEEEEEc-ccCCCeEEEEeC
Q psy11558         24 EPPNRIDFSNTTGAQVECTAR-GSPNPEIIWIRS   56 (74)
Q Consensus        24 ~Pp~~v~~~~g~~v~L~C~A~-G~P~P~I~W~~~   56 (74)
                      .+|..+....|+++.|.|... ......+.|.+.
T Consensus         6 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~   39 (114)
T PF07686_consen    6 QPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQ   39 (114)
T ss_dssp             EEESEEEEETTSEEEEEEEEESSSSGSEEEEEEE
T ss_pred             EeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEE
Confidence            356777788999999999999 778889999984

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=94.62  E-value=0.072  Score=32.81  Aligned_cols=21  Identities=24%  Similarity=0.612  Sum_probs=18.1

Q ss_pred             CeEEEEEEc-ccCCCeEEEEeC
Q psy11558         36 GAQVECTAR-GSPNPEIIWIRS   56 (74)
Q Consensus        36 ~v~L~C~A~-G~P~P~I~W~~~   56 (74)
                      -..+.|.+. |.|.++|+|.++
T Consensus        17 ~~va~C~s~~gkPaa~IsW~~~   38 (95)
T cd07703          17 VPVAKCVSANGRPPARISWSST   38 (95)
T ss_pred             cEEEEEEcCCCCCCcEEEEEcC
Confidence            389999665 999999999975

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=94.49  E-value=0.062  Score=32.92  Aligned_cols=21  Identities=24%  Similarity=0.593  Sum_probs=18.7

Q ss_pred             CeEEEEEE-cccCCCeEEEEeC
Q psy11558         36 GAQVECTA-RGSPNPEIIWIRS   56 (74)
Q Consensus        36 ~v~L~C~A-~G~P~P~I~W~~~   56 (74)
                      ...+.|.| .|.|.++|+|.++
T Consensus        17 ~~va~C~s~~gkP~a~ItW~~~   38 (95)
T cd05719          17 VTVATCVSANGKPPATISWETT   38 (95)
T ss_pred             cEEEEEECCCCcCCCEEEEEeC
Confidence            48999999 6999999999974

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=94.25  E-value=0.61  Score=27.68  Aligned_cols=51  Identities=14%  Similarity=0.186  Sum_probs=32.6

Q ss_pred             CccceEEEcCCCcEEecCC---CCeEEEEEEcccCCCeEEEEeCCCeeecCCCCce
Q psy11558         16 TLGPIFIKEPPNRIDFSNT---TGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR   68 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g---~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~~r   68 (74)
                      ..+|.++.-+...+.....   ....|.++|.|. .+.+.|+. ||+.+......+
T Consensus         8 ~~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~v-dg~~~g~~~~~~   61 (89)
T PF06832_consen    8 GSPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFV-DGEPLGTTQPGH   61 (89)
T ss_pred             CCCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEE-CCEEcccCCCCC
Confidence            3455555544444333321   258899999998 77999996 999985444333

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=94.10  E-value=0.12  Score=31.93  Aligned_cols=31  Identities=19%  Similarity=0.426  Sum_probs=23.0

Q ss_pred             CCcEEecCCCCeEEEEEEcccC----CCeEEEEeC
Q psy11558         26 PNRIDFSNTTGAQVECTARGSP----NPEIIWIRS   56 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~P----~P~I~W~~~   56 (74)
                      |..+....|++|.|.|..+...    ...|.|++.
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~   39 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQ   39 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEe
Confidence            4555677898999999887543    367999764

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=93.48  E-value=0.096  Score=32.30  Aligned_cols=31  Identities=16%  Similarity=0.461  Sum_probs=23.4

Q ss_pred             cCCCCeEEEEEE-c----ccCCCeEEEEeCCCeeecC
Q psy11558         32 SNTTGAQVECTA-R----GSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        32 ~~g~~v~L~C~A-~----G~P~P~I~W~~~dG~~i~~   63 (74)
                      ..|.++.|.|.- .    -++.|+|+|++ ||.++..
T Consensus         8 ~~~~~~~l~Cp~~~~f~~~~~~~~v~WYK-d~~~l~~   43 (95)
T cd05897           8 FTSTSGKLVCPDLSDFTINRTDVELQWYK-DSVLLDK   43 (95)
T ss_pred             ccccCcEEECCCHHHcccCCCCCcEEEcc-CCEECcC
Confidence            356679999973 2    34889999996 8888753

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=93.29  E-value=0.35  Score=29.48  Aligned_cols=38  Identities=21%  Similarity=0.385  Sum_probs=24.6

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcc-cCC-CeEEEEeCCCee
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARG-SPN-PEIIWIRSDGTA   60 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~-P~I~W~~~dG~~   60 (74)
                      +|..-|...- .+ +..++|.|.|.| .|. =+|+|.+ ||..
T Consensus         4 v~~l~~~~~~-~~-~~~~~L~C~a~gFyP~~i~vtW~k-~g~~   43 (95)
T cd04985           4 VFPLVPCCSS-SS-SDSVTLGCLATGFLPEPVTFTWNS-GSNS   43 (95)
T ss_pred             EEEeCCCccc-cC-CCcEEEEEEEeeEECCCcEEEEeE-CCEE
Confidence            3444444332 23 345999999999 563 4579986 7876

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=93.29  E-value=0.1  Score=30.22  Aligned_cols=24  Identities=13%  Similarity=0.255  Sum_probs=20.8

Q ss_pred             CCCeEEEEEEcccCCCeEEEEeCC
Q psy11558         34 TTGAQVECTARGSPNPEIIWIRSD   57 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P~I~W~~~d   57 (74)
                      |++|+|.|.....+.-.|.|.+.+
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~   24 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGK   24 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCC
Confidence            567999999998888899999864

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=93.21  E-value=0.28  Score=30.41  Aligned_cols=32  Identities=9%  Similarity=0.187  Sum_probs=24.0

Q ss_pred             ecCCCCeEEEEEEcccCCC--eEEEEeCCCeeec
Q psy11558         31 FSNTTGAQVECTARGSPNP--EIIWIRSDGTAVG   62 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~P--~I~W~~~dG~~i~   62 (74)
                      +..|++.+|.|.+...+.|  .|+|...++..++
T Consensus        11 lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~   44 (88)
T cd07694          11 VLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ   44 (88)
T ss_pred             eecCCcEEEEEecCCCCCCCccEEEeCCCCccce
Confidence            3467889999999654555  9999987776544

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=93.13  E-value=0.2  Score=30.46  Aligned_cols=28  Identities=25%  Similarity=0.604  Sum_probs=22.1

Q ss_pred             ecCCCCeEEEEEEcccC-CCeEEEEeCCC
Q psy11558         31 FSNTTGAQVECTARGSP-NPEIIWIRSDG   58 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P-~P~I~W~~~dG   58 (74)
                      +..|+.|+|.|.+.+.. ...+.|++-+.
T Consensus         3 v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~   31 (107)
T cd07700           3 VQTNNTVKLSCEAKGISENTRIYWLRWRQ   31 (107)
T ss_pred             EcCCCCEEEEEEEecCCCCCeEEEEEECC
Confidence            45788899999998854 56899998643

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=93.08  E-value=0.16  Score=30.58  Aligned_cols=23  Identities=22%  Similarity=0.538  Sum_probs=19.8

Q ss_pred             CCCeEEEEEEcccC------CCeEEEEeC
Q psy11558         34 TTGAQVECTARGSP------NPEIIWIRS   56 (74)
Q Consensus        34 g~~v~L~C~A~G~P------~P~I~W~~~   56 (74)
                      |++|+|.|...+.|      .++|.|.+.
T Consensus         2 G~~V~L~C~~~~~~~~~~~~~~~i~W~k~   30 (106)
T cd05714           2 GGNVTLPCRFHLEPALSAPHGPRIKWTKL   30 (106)
T ss_pred             CCCEEEeEEeECCcccCCCCCcEEEEEEe
Confidence            66899999998875      679999986

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=92.97  E-value=0.23  Score=30.88  Aligned_cols=30  Identities=23%  Similarity=0.405  Sum_probs=23.3

Q ss_pred             CCcEEecCCCCeEEEEEEcccC----CCeEEEEe
Q psy11558         26 PNRIDFSNTTGAQVECTARGSP----NPEIIWIR   55 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~P----~P~I~W~~   55 (74)
                      +..+.+.+|+++.|.|.-+..+    ...|+|++
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~   38 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNF   38 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEE
Confidence            4667788999999999987544    34699975

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>PHA03052 Hypothetical protein; Provisional

Probab=92.96  E-value=0.46  Score=28.31  Aligned_cols=34  Identities=21%  Similarity=0.459  Sum_probs=28.3

Q ss_pred             CcEEecCCCCeEEEEEEc---ccCCCeEEEEeCCCeee
Q psy11558         27 NRIDFSNTTGAQVECTAR---GSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        27 ~~v~~~~g~~v~L~C~A~---G~P~P~I~W~~~dG~~i   61 (74)
                      +.++.+-|+..++.|+|.   |...+.|.|. .||..+
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~-~N~~~~   41 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWI-SNGMYY   41 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEE-eCCcEE
Confidence            677788899999999997   4457889998 588888

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=92.72  E-value=0.88  Score=28.30  Aligned_cols=33  Identities=18%  Similarity=0.298  Sum_probs=24.4

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeC
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRS   56 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~   56 (74)
                      ++|+ .+.+..|+.|+|+|..++.-  ...+.|++-
T Consensus         2 ~~~~-~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ   36 (117)
T cd04981           2 VESG-PGLVKPGQSLKLSCKASGFTFTSYGVNWVRQ   36 (117)
T ss_pred             ccCC-CeEEcCCCCEEEEEEEeCCCcccceEEEEEE
Confidence            3443 44577898999999987754  567999975

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=92.53  E-value=0.51  Score=28.30  Aligned_cols=37  Identities=11%  Similarity=0.294  Sum_probs=26.4

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCC
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG   58 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG   58 (74)
                      |.+...| ..+ +..|+.|+|.|.+.- +.=.+.|.+++.
T Consensus         2 P~l~a~p-~~v-V~~G~~VTL~C~~~~-~~~~f~l~k~g~   38 (94)
T cd05711           2 PFLSAHP-SPV-VPSGENVTLQCHSDI-RFDRFILYKEGR   38 (94)
T ss_pred             CEEEecC-CCc-cCCCCeEEEEEecCC-CCCEEEEEECCC
Confidence            5666664 443 567888999998876 666799997443

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=92.50  E-value=0.26  Score=30.77  Aligned_cols=38  Identities=26%  Similarity=0.526  Sum_probs=24.7

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcc-c-C-CCeEEEEeCCC
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARG-S-P-NPEIIWIRSDG   58 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G-~-P-~P~I~W~~~dG   58 (74)
                      +++. ||..-+...+..++|.|.+.| . | .=+|+|.++++
T Consensus         6 V~l~-pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~   46 (99)
T cd04986           6 LSLQ-RPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGG   46 (99)
T ss_pred             EEEE-CcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCc
Confidence            4455 344333334557999999999 5 6 34699997543

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=92.34  E-value=0.27  Score=34.32  Aligned_cols=31  Identities=16%  Similarity=0.417  Sum_probs=25.2

Q ss_pred             cEEecCCCCeEEEEEEc-ccCCCeEEEEeCCC
Q psy11558         28 RIDFSNTTGAQVECTAR-GSPNPEIIWIRSDG   58 (74)
Q Consensus        28 ~v~~~~g~~v~L~C~A~-G~P~P~I~W~~~dG   58 (74)
                      .+++.+|++|+|.|.-. +...+.|+|++.++
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~   55 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNK   55 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCC
Confidence            45677888999999984 77799999998654

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=91.91  E-value=0.77  Score=27.89  Aligned_cols=27  Identities=11%  Similarity=0.231  Sum_probs=21.9

Q ss_pred             ecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558         31 FSNTTGAQVECTARGSPNPEIIWIRSD   57 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~P~I~W~~~d   57 (74)
                      +..|+.|+|+|...+.-...+.|++-.
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~   29 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQP   29 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEeC
Confidence            356888999999987666779999864

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=91.14  E-value=0.37  Score=28.86  Aligned_cols=24  Identities=13%  Similarity=0.412  Sum_probs=19.2

Q ss_pred             CCCeEEEEEEcccC------CCeEEEEeCC
Q psy11558         34 TTGAQVECTARGSP------NPEIIWIRSD   57 (74)
Q Consensus        34 g~~v~L~C~A~G~P------~P~I~W~~~d   57 (74)
                      |++|+|.|.....|      ...|.|.+.+
T Consensus         2 G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~   31 (106)
T cd05877           2 GGNVTLPCRYHYEPELSAPRKIRVKWTKLE   31 (106)
T ss_pred             CCcEEEEeEeECCCcCCCCccceEEEEEec
Confidence            66799999988764      4679999864

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=90.59  E-value=0.63  Score=28.82  Aligned_cols=33  Identities=12%  Similarity=0.304  Sum_probs=23.8

Q ss_pred             CCCcEEecCCCCeEEEEEEcccC------CCeEEEEeCC
Q psy11558         25 PPNRIDFSNTTGAQVECTARGSP------NPEIIWIRSD   57 (74)
Q Consensus        25 Pp~~v~~~~g~~v~L~C~A~G~P------~P~I~W~~~d   57 (74)
                      .|+.+....|+.|+|.|.-.-.+      .-.+.|++.+
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~   43 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGH   43 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCC
Confidence            35666788899999999765321      3569999864

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=90.56  E-value=0.63  Score=29.39  Aligned_cols=29  Identities=10%  Similarity=0.221  Sum_probs=22.3

Q ss_pred             CcEEecCCCCeEEEEEEccc----CCCeEEEEe
Q psy11558         27 NRIDFSNTTGAQVECTARGS----PNPEIIWIR   55 (74)
Q Consensus        27 ~~v~~~~g~~v~L~C~A~G~----P~P~I~W~~   55 (74)
                      ..+....|+++.|.|.-+..    +..+|+|.+
T Consensus         6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~   38 (116)
T cd05879           6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHY   38 (116)
T ss_pred             ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEE
Confidence            44556788899999999774    457999944

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=89.90  E-value=0.38  Score=28.14  Aligned_cols=23  Identities=17%  Similarity=0.536  Sum_probs=18.6

Q ss_pred             CeEEEEEEcccC---CCeEEEEeCCC
Q psy11558         36 GAQVECTARGSP---NPEIIWIRSDG   58 (74)
Q Consensus        36 ~v~L~C~A~G~P---~P~I~W~~~dG   58 (74)
                      +|.|.|...+.+   ...|.|.+.++
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~   27 (98)
T cd05718           2 SVTLECSFPVPGPVQITQVTWMKITG   27 (98)
T ss_pred             CEEEEeEeeCCCCceEEEEEEeeECC
Confidence            589999999875   55799998654

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=89.36  E-value=0.67  Score=27.30  Aligned_cols=28  Identities=11%  Similarity=0.133  Sum_probs=22.4

Q ss_pred             EecCCCCeEEEEEEcc-cCCCeEEEEeCC
Q psy11558         30 DFSNTTGAQVECTARG-SPNPEIIWIRSD   57 (74)
Q Consensus        30 ~~~~g~~v~L~C~A~G-~P~P~I~W~~~d   57 (74)
                      ....|++++|.|.... .+...+.|.+.+
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~   31 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSYEKYWCKWG   31 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCcEeEeECCC
Confidence            4567888999999876 468889999864

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=89.30  E-value=0.85  Score=29.43  Aligned_cols=33  Identities=9%  Similarity=0.110  Sum_probs=22.0

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccCCCe---EEEEeC
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSPNPE---IIWIRS   56 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P~P~---I~W~~~   56 (74)
                      .++...+. ..|.+++|.|+++|.=..+   ++|+|.
T Consensus         3 ~~~~~~lv-~p~~sv~LsC~~sg~~~s~e~~~~wvRq   38 (115)
T cd05721           3 VQQSPVLA-SSNGAASLVCEYTYNGFSKEFRASLLKG   38 (115)
T ss_pred             eecCCeEE-cCCCCEEEEEEecCCccccEEEEEEEEe
Confidence            34444443 4455799999998866544   888873

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>KOG3515|consensus

Probab=88.90  E-value=0.4  Score=39.35  Aligned_cols=31  Identities=13%  Similarity=0.438  Sum_probs=24.9

Q ss_pred             cEEecCCCCeEEEEEEcccC-CCeEEEEeCCC
Q psy11558         28 RIDFSNTTGAQVECTARGSP-NPEIIWIRSDG   58 (74)
Q Consensus        28 ~v~~~~g~~v~L~C~A~G~P-~P~I~W~~~dG   58 (74)
                      +..+..|++|.|.|.+.|+| .+++.|++++-
T Consensus        16 ~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~   47 (741)
T KOG3515|consen   16 TVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTS   47 (741)
T ss_pred             ChhhccCCcceeeeecCCCCCCcceEEEecCc
Confidence            33567888999999999887 67899998643

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=88.87  E-value=0.85  Score=28.86  Aligned_cols=23  Identities=26%  Similarity=0.596  Sum_probs=19.3

Q ss_pred             eEEEEE-EcccCCCeEEEEeC-CCe
Q psy11558         37 AQVECT-ARGSPNPEIIWIRS-DGT   59 (74)
Q Consensus        37 v~L~C~-A~G~P~P~I~W~~~-dG~   59 (74)
                      +.-.|. |.|.|+.+|+|.-+ +|.
T Consensus        23 ~VA~CiSa~GrPpa~ItW~t~l~G~   47 (98)
T cd05890          23 LVATCVSANGKPPSVVRWDTRLKGE   47 (98)
T ss_pred             EEEEEEcCCCcCCcEeEEEccCCCc
Confidence            788999 88999999999865 454

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=88.42  E-value=0.76  Score=28.86  Aligned_cols=23  Identities=17%  Similarity=0.371  Sum_probs=18.7

Q ss_pred             CCCeEEEEEEcccC------------CCeEEEEeC
Q psy11558         34 TTGAQVECTARGSP------------NPEIIWIRS   56 (74)
Q Consensus        34 g~~v~L~C~A~G~P------------~P~I~W~~~   56 (74)
                      |++++|.|.-...+            .+.|.|.+-
T Consensus         2 G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~   36 (112)
T cd05900           2 GSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFI   36 (112)
T ss_pred             CCcEEEeeEEeCCcCccccccccCCCCCEEEEEEe
Confidence            66799999998654            579999975

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=88.24  E-value=1.3  Score=27.95  Aligned_cols=33  Identities=21%  Similarity=0.392  Sum_probs=23.2

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcc-cCC--CeEEEEe
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARG-SPN--PEIIWIR   55 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~--P~I~W~~   55 (74)
                      |.+...++    ...|..+++.|.|.| .|.  .+|.|.+
T Consensus         4 p~i~~~~~----l~~G~~vtv~C~v~~v~P~~~l~v~Llk   39 (99)
T cd07689           4 PEILLSGP----LEEGKPVTVKCEVPDVYPFDRLEIELLK   39 (99)
T ss_pred             ccCcccCc----ccCCceEEEEEEecCcccCCceEEEEec
Confidence            44444444    357888999999995 454  6799986

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=88.21  E-value=1.4  Score=27.35  Aligned_cols=24  Identities=8%  Similarity=0.285  Sum_probs=18.9

Q ss_pred             ecCCCCeEEEEEEcccCCC--eEEEEeC
Q psy11558         31 FSNTTGAQVECTARGSPNP--EIIWIRS   56 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~P--~I~W~~~   56 (74)
                      ..+|.++.|+|  ++.|.+  .++|++.
T Consensus        10 ~~~G~~V~L~v--~~~p~~~~~~~W~kg   35 (105)
T cd05774          10 VAEGENVLLLV--HNLPENLLAYAWYKG   35 (105)
T ss_pred             ccCCCCEEEEe--cCCCCCceEEEEEcC
Confidence            35788899997  556777  9999984

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=88.02  E-value=0.52  Score=27.64  Aligned_cols=25  Identities=32%  Similarity=0.659  Sum_probs=17.8

Q ss_pred             EEecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558         29 IDFSNTTGAQVECTARGSPNPEIIWIRSD   57 (74)
Q Consensus        29 v~~~~g~~v~L~C~A~G~P~P~I~W~~~d   57 (74)
                      |.++ |++|+|.|.-.+..   |.|.+++
T Consensus         3 Vsis-GTtVtlTCP~~~~~---i~W~~n~   27 (65)
T cd07692           3 VSIS-GTTVTVTCPLSGDD---IKWKKND   27 (65)
T ss_pred             EEEe-ccEEEEECCCCCCC---ceEEeCC
Confidence            4454 66799999866433   9999754

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=87.94  E-value=0.95  Score=27.89  Aligned_cols=24  Identities=21%  Similarity=0.531  Sum_probs=19.4

Q ss_pred             CCCeEEEEEEcccCC----------CeEEEEeCC
Q psy11558         34 TTGAQVECTARGSPN----------PEIIWIRSD   57 (74)
Q Consensus        34 g~~v~L~C~A~G~P~----------P~I~W~~~d   57 (74)
                      |++|+|.|..+.++.          ..|.|.+.+
T Consensus         2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~   35 (110)
T cd05878           2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLS   35 (110)
T ss_pred             CCCEEEeeEeeCCccccccccCCCCCEEEEEEec
Confidence            668999999988763          669999863

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>smart00406 IGv Immunoglobulin V-Type

Probab=87.56  E-value=1  Score=24.77  Aligned_cols=21  Identities=24%  Similarity=0.591  Sum_probs=17.5

Q ss_pred             eEEEEEEcccCCC--eEEEEeCC
Q psy11558         37 AQVECTARGSPNP--EIIWIRSD   57 (74)
Q Consensus        37 v~L~C~A~G~P~P--~I~W~~~d   57 (74)
                      |.|.|...+...+  .+.|.+..
T Consensus         2 v~l~C~~~~~~~~~~~v~W~~~~   24 (81)
T smart00406        2 VTLSCKASGFTFSSYYVSWVRQP   24 (81)
T ss_pred             EEEEEEEeccccceeEEEEEEeC
Confidence            7899999987765  89999854

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=86.90  E-value=1.7  Score=25.60  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=17.0

Q ss_pred             CCCeEEEEEEcccC---CCeEEEEeCCC
Q psy11558         34 TTGAQVECTARGSP---NPEIIWIRSDG   58 (74)
Q Consensus        34 g~~v~L~C~A~G~P---~P~I~W~~~dG   58 (74)
                      |++|.|.|.-.+..   ...|.|.+.+.
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~   28 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQF   28 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCC
Confidence            45799999986432   23688987553

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=86.48  E-value=1.3  Score=26.30  Aligned_cols=25  Identities=12%  Similarity=0.407  Sum_probs=17.9

Q ss_pred             CCCeEEEEEEcccCCC-eEEEEeCCC
Q psy11558         34 TTGAQVECTARGSPNP-EIIWIRSDG   58 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P-~I~W~~~dG   58 (74)
                      |++|+|.|.-...... .|.|.+.++
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~   26 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQG   26 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCC
Confidence            5679999986654333 599998654

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>PHA03376 BARF1; Provisional

Probab=85.63  E-value=0.64  Score=33.11  Aligned_cols=26  Identities=27%  Similarity=0.682  Sum_probs=22.0

Q ss_pred             CCCeEEEEEEcccCCCeEEEEeCCCe
Q psy11558         34 TTGAQVECTARGSPNPEIIWIRSDGT   59 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P~I~W~~~dG~   59 (74)
                      -.--.+.|...|-|.|.++|..++|.
T Consensus       139 ~~~~~i~C~sggfP~P~~~Wle~~~~  164 (221)
T PHA03376        139 FSVLTVTCTVNAFPHPHVQWLMPEGV  164 (221)
T ss_pred             CCeeEEEEecCCcCCchheeccccCC
Confidence            33478999999999999999987775

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=81.44  E-value=2.4  Score=26.57  Aligned_cols=23  Identities=22%  Similarity=0.585  Sum_probs=17.3

Q ss_pred             CCCeEEEEEEcccC-------CCeEEEEeC
Q psy11558         34 TTGAQVECTARGSP-------NPEIIWIRS   56 (74)
Q Consensus        34 g~~v~L~C~A~G~P-------~P~I~W~~~   56 (74)
                      |+++.|.|.-+-.|       .|.|+|.+.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~   31 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKL   31 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEe
Confidence            55799999955333       589999974

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	74
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		5e-22
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		1e-21
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		1e-21
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		2e-21

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 99.4 bits (246), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/57 (73%), Positives = 50/57 (87%)
Query: 13 EDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRK 69
          + D  GP+F+KEP NRIDFSN+TGA++EC A G+P PEIIWIRSDGTAVGDVPGLR+
Sbjct: 4  QGDQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQ 60

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/52 (78%), Positives = 48/52 (92%)
Query: 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRK 69
          GP+F+KEP NRIDFSN+TGA++EC A G+P PEIIWIRSDGTAVGDVPGLR+
Sbjct: 3  GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQ 54

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/52 (78%), Positives = 48/52 (92%)
Query: 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRK 69
          GP+F+KEP NRIDFSN+TGA++EC A G+P PEIIWIRSDGTAVGDVPGLR+
Sbjct: 3  GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQ 54

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 54/64 (84%), Gaps = 3/64 (4%)
Query: 9  TMAA---EDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP 65
          T+AA   + D  GP+F+KEP NRIDFSN+TGA++EC A G+P PEIIWIRSDGTAVGDVP
Sbjct: 26 TLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP 85
Query: 66 GLRK 69
          GLR+
Sbjct: 86 GLRQ 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	74
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-15
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-05
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-04
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-04
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-04
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-15
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	9e-05
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-04
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-10
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-05
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	4e-04
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-10
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	9e-05
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-04
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-07
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	6e-05
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	1e-06
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-06
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-06
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-06
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-04
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-04
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	7e-04
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	6e-06
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	6e-06
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	4e-04
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	5e-04
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	7e-06
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	7e-06
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	7e-06
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	8e-06
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-05
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	7e-05
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	8e-06
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	1e-05
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-05
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	8e-04
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-05
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-05
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	6e-04
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	4e-05
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-05
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-04
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	4e-05
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	5e-05
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	5e-05
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-04
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	6e-05
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	6e-05
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-04
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-04
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-05
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	7e-05
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	3e-04
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	8e-05
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	8e-05
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	8e-05
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	9e-05
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	1e-04
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-04
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-04
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-04
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-04
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-04
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	6e-04
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-04
2ens_A	96	Advanced glycosylation END product-specific recept	2e-04
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-04
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-04
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	3e-04
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	3e-04
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-04
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-04
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-04
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	4e-04
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-04
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	4e-04
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	4e-04
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	4e-04
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	5e-04
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	5e-04
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	9e-04
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	5e-04
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	5e-04
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	5e-04
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	7e-04
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	7e-04
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	7e-04
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	8e-04
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	8e-04
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	9e-04

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 68.4 bits (167), Expect = 1e-15
 Identities = 42/59 (71%), Positives = 50/59 (84%)

Query: 11 AAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRK 69
            + D  GP+F+KEP NRIDFSN+TGA++EC A G+P PEIIWIRSDGTAVGDVPGLR+
Sbjct: 31 PPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQ 89

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 39.1 bits (91), Expect = 2e-05
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKYI 73
           P +I EP ++     +  A+VEC A G P P++ W ++ G   G+   L+K   I
Sbjct: 715 PRWILEPTDKAFAQGSD-AKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNI 768

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 37.2 bits (86), Expect = 1e-04
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 63
           P+  +           +   ++C A G+P PEI W   DG  + +
Sbjct: 430 PVIRQAFQEETMEPGPS-VFLKCVAGGNPTPEISWEL-DGKKIAN 472

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 35.7 bits (82), Expect = 5e-04
 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG 66
                +PP +        A   C   G+P   + W++ DG A+G    
Sbjct: 344 LSAKIDPPTQTVDFGRP-AVFTCQYTGNPIKTVSWMK-DGKAIGHSES 389

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 34.9 bits (80), Expect = 7e-04
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 17  LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
            G  +I++   +   +  T   V C   G P   I+W R + 
Sbjct: 525 YGLPYIRQMEKKAIVAGET-LIVTCPVAGYPIDSIVWERDNR 565

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 67.3 bits (164), Expect = 3e-15
 Identities = 41/52 (78%), Positives = 48/52 (92%)

Query: 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRK 69
          GP+F+KEP NRIDFSN+TGA++EC A G+P PEIIWIRSDGTAVGDVPGLR+
Sbjct: 3  GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQ 54

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 37.6 bits (87), Expect = 9e-05
 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG 66
                +PP +        A   C   G+P   + W++ DG A+G    
Sbjct: 308 LSAKIDPPTQTVDFGRP-AVFTCQYTGNPIKTVSWMK-DGKAIGHSES 353

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 37.2 bits (86), Expect = 1e-04
 Identities = 9/55 (16%), Positives = 17/55 (30%)

Query: 4   SLLRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
           +  RL +     +  P         ++        + C A+G P P   W +   
Sbjct: 197 TKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIE 251

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 54.1 bits (130), Expect = 1e-10
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 18 GPIFIKEPPNRIDFSNTTGAQV--ECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
          GP+F++EP + +   ++   +V   C  +G+P P I W   +GT V      R
Sbjct: 5  GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKL-NGTDVDIGMDFR 56

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 39.8 bits (93), Expect = 1e-05
 Identities = 16/56 (28%), Positives = 24/56 (42%)

Query: 6   LRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
           L L          P    + P  +     T  ++EC A G+P P I+W R+DG  +
Sbjct: 192 LILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPI 247

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 36.0 bits (83), Expect = 4e-04
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR 55
           P +++   +       +    EC A G P P   W++
Sbjct: 296 PNWVQIINDIHVAMEES-VFWECKANGRPKPTYRWLK 331

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 53.3 bits (128), Expect = 2e-10
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 16 TLGPIFIKEPPNRIDFSNTTGAQV--ECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
          + GP+F ++P + +    +   +V   C AR +P     W   +GT +   P  R
Sbjct: 2  SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKM-NGTELKMGPDSR 55

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 37.5 bits (87), Expect = 9e-05
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT 59
           P    + P            +EC A G+P P+I W + DG+
Sbjct: 207 PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGS 247

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 36.0 bits (83), Expect = 3e-04
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR 55
           P ++    +      +   +  C A G P P + W+R
Sbjct: 295 PDWLDVITDTEADIGSD-LRWSCVASGKPRPAVRWLR 330

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 44.5 bits (105), Expect = 3e-07
 Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 1/50 (2%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
          P   K+              +EC A+G+P P   W R +          R
Sbjct: 17 PTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR-NSRFFNIAKDPR 65

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 37.9 bits (88), Expect = 6e-05
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYK 71
           P ++ EP N I        ++ C A G+P P + W+  +G  +   P     +
Sbjct: 313 PYWLDEPKNLILAPGED-GRLVCRANGNPKPTVQWMV-NGEPLQSAPPNPNRE 363

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 41.7 bits (98), Expect = 1e-06
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKYIF 74
          P  ++ P + I       A + C A G P P I W +       D    R ++ + 
Sbjct: 10 PRIVEHPSDLIVSKGEP-ATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLL 64

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 42.3 bits (99), Expect = 1e-06
 Identities = 7/53 (13%), Positives = 12/53 (22%), Gaps = 1/53 (1%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYK 71
                          +    V CT    P+P + W+  +G             
Sbjct: 105 LTLSVHSERSQFPDFSV-LTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVM 156

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 41.5 bits (97), Expect = 2e-06
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT 59
            F++ P ++  +   +  ++ C A GSP PEI W      
Sbjct: 22 AGFVQAPLSQQRWVGGS-VELHCEAVGSPVPEIQWWFEGQG 61

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 41.7 bits (98), Expect = 3e-06
 Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
          P FI+   +           ++C   G+P   I W + + T +   P  +
Sbjct: 6  PYFIEPLEHVEAAIGEP-ITLQCKVDGTPEIRIAWYK-EHTKLRSAPAYK 53

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 37.5 bits (87), Expect = 1e-04
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
           P+F K+P             +EC  +G+P  ++ W + D   +
Sbjct: 385 PVFRKKPHPVETLKGAD-VHLECELQGTPPFQVSWHK-DKREL 425

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 35.5 bits (82), Expect = 5e-04
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
           P FIK+             + EC   GSP  +++W + D T + +    R
Sbjct: 291 PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK-DETEIQESSKFR 339

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 35.2 bits (81), Expect = 7e-04
 Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
           P F+K+  +          Q++ T  G+    + W +  G
Sbjct: 478 PRFVKKLSDISTVVGEE-VQLQATIEGAEPISVAWFKDKG 516

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 40.6 bits (95), Expect = 6e-06
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKY 70
          P  I+ P + +   N   A + C   G P P I W + DG  V         
Sbjct: 10 PRIIEHPTDLVVKKNEP-ATLNCKVEGKPEPTIEWFK-DGEPVSTNEKKSHR 59

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 40.9 bits (96), Expect = 6e-06
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
           P FIK+             + EC   GSP  +++W + D T + +    R
Sbjct: 99  PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK-DETEIQESSKFR 147

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 35.9 bits (83), Expect = 4e-04
 Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
          P F  +P +       +    +C   G+   +I W + D   +
Sbjct: 6  PFFDLKPVSVDLALGES-GTFKCHVTGTAPIKITWAK-DNREI 46

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 35.1 bits (81), Expect = 5e-04
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
           P+F K+P             +EC  +G+P  ++ W + D   +
Sbjct: 193 PVFRKKPHPVETLKGAD-VHLECELQGTPPFQVSWHK-DKREL 233

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 40.7 bits (95), Expect = 7e-06
 Identities = 7/48 (14%), Positives = 15/48 (31%)

Query: 17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV 64
          +G + +      +        ++ C   G  +P + W    G     V
Sbjct: 2  MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLV 49

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 40.3 bits (94), Expect = 7e-06
 Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 1/52 (1%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKY 70
                  +     N +  ++ CT  G  +P + W    G+    V    + 
Sbjct: 2  GSVYTAQSDVQVPENES-IKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQI 52

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 40.7 bits (95), Expect = 8e-06
 Identities = 8/72 (11%), Positives = 22/72 (30%), Gaps = 2/72 (2%)

Query: 1   MYLSLLRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTA 60
           +   +  +T         P+      + +  +      + C    +P     + + +G  
Sbjct: 195 VEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDV-TMIYCMYGSNPMGYPNYFK-NGKD 252

Query: 61  VGDVPGLRKYKY 72
           V   P  R  ++
Sbjct: 253 VNGNPEDRITRH 264

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 39.5 bits (92), Expect = 2e-05
 Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 1/54 (1%)

Query: 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYK 71
           P+   +P   + F       +EC   G+        + DG +          +
Sbjct: 6  YPVLKDQPAEVL-FRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR 58

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 38.0 bits (88), Expect = 7e-05
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR 55
           P + ++P   I         + C   G P P ++W  
Sbjct: 309 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH 345

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 40.2 bits (94), Expect = 8e-06
 Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 2/50 (4%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
            +F   P  +        A + C    S  P IIW    G  V     +R
Sbjct: 101 LMFKNAPTPQEFKEGED-AVIVCDVVSSLPPTIIWKH-KGRDVILKKDVR 148

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 40.0 bits (93), Expect = 1e-05
 Identities = 11/41 (26%), Positives = 16/41 (39%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT 59
           P         +    T+  ++ C A G P  E+IW  SD  
Sbjct: 116 PYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQ 156

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 40.2 bits (94), Expect = 1e-05
 Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 2/50 (4%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
             F +    +        A+V C    SP P + W+      V  +   R
Sbjct: 99  LTFREVVSPQEFKQGED-AEVVCRVSSSPAPAVSWLY-HNEEVTTISDNR 146

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 34.8 bits (80), Expect = 8e-04
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 19  PIFIKEPPNRIDFSNTTGAQV--ECTARGSPNPEIIWIRSDGTAV 61
           P  I  P    + +   G ++   C A GSP P I W R +G  +
Sbjct: 192 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR-NGKLI 235

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 39.0 bits (91), Expect = 2e-05
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKYI 73
          P  ++ P + I       A + C A G P P I W +  G  V       +   +
Sbjct: 10 PRIVEHPSDLIVSKGEP-ATLNCKAEGRPTPTIEWYK-GGERVETDKDDPRSHRM 62

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 39.0 bits (91), Expect = 2e-05
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 6   LRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
           L +    +     P+  + P  R+     T   + C A G+P P I WI+ + T V
Sbjct: 98  LTIYEGDKTPAGFPVITQGPGTRVIEVGHT-VLMTCKAIGNPTPNIYWIK-NQTKV 151

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 35.2 bits (81), Expect = 6e-04
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRK 69
          P  I++P N+        A   C ARG P P I+W + +G  V        
Sbjct: 7  PEIIRKPQNQGVRVGGV-ASFYCAARGDPPPSIVWRK-NGKKVSGTQSRYT 55

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 38.3 bits (89), Expect = 4e-05
 Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKY 72
           P       +         A + C + G P+PE +W +     V +       ++
Sbjct: 93  PDITGHKRSENKNEGQD-AMMYCKSVGYPHPEWMWRK-KENGVFEEISNSSGRF 144

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 38.6 bits (90), Expect = 4e-05
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
           P   + P N         A + CT  G+P P + WI+ D 
Sbjct: 101 PKITRPPINVKIIEGLK-AVLPCTTMGNPKPSVSWIKGDS 139

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 35.9 bits (83), Expect = 3e-04
 Identities = 9/48 (18%), Positives = 12/48 (25%), Gaps = 2/48 (4%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG 66
          P+                A   C     P PEI W R +   +     
Sbjct: 8  PVITTPLETVDALVEEV-ATFMCAVESYPQPEISWTR-NKILIKLFDT 53

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 38.2 bits (89), Expect = 4e-05
 Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 2/50 (4%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
            F +    +        A+V C    SP P + W+      V  +   R
Sbjct: 3  LTFREVVSPQEFKQGED-AEVVCRVSSSPAPAVSWLY-HNEEVTTISDNR 50

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 38.3 bits (89), Expect = 5e-05
 Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 2/50 (4%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
            +F   P  +        A + C    S  P IIW    G  V     +R
Sbjct: 101 LMFKNAPTPQEFKEGED-AVIVCDVVSSLPPTIIWKH-KGRDVILKKDVR 148

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 38.2 bits (89), Expect = 5e-05
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
          P F +   + +    +T A  E    G P PE+ W R DG  +
Sbjct: 6  PTFTQPLQSVVVLEGST-ATFEAHISGFPVPEVSWFR-DGQVI 46

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 35.5 bits (82), Expect = 4e-04
 Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
           P F++   +      +   +++    G P P + + R DG  +
Sbjct: 104 PNFVQRLQSMTVRQGSQ-VRLQVRVTGIPTPVVKFYR-DGAEI 144

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 38.2 bits (88), Expect = 6e-05
 Identities = 8/68 (11%), Positives = 22/68 (32%), Gaps = 1/68 (1%)

Query: 6   LRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP 65
           +      E+    P+ +      ++    +  Q+ C   G  +    W   +G+ + +  
Sbjct: 196 IEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKW-NGSVIDEDD 254

Query: 66  GLRKYKYI 73
            +    Y 
Sbjct: 255 PVLGEDYY 262

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 37.9 bits (88), Expect = 6e-05
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 7   RLTMAAEDDTLG--PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV 64
           +LT+  ED      P     P  ++     T A + C A G+P+PEI W + D   V   
Sbjct: 95  KLTVLREDQLPSGFPNIDMGPQLKVVERTRT-ATMLCAASGNPDPEITWFK-DFLPVDPS 152

Query: 65  PGLRKYK 71
               + K
Sbjct: 153 ASNGRIK 159

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 37.1 bits (86), Expect = 1e-04
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
          P FIKEP ++I  S    A   C A G P P + W +  G  V
Sbjct: 7  PRFIKEPKDQIGVSGGV-ASFVCQATGDPKPRVTWNK-KGKKV 47

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 36.0 bits (83), Expect = 4e-04
 Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
           P F   P +           + C A GSP P + W++     +
Sbjct: 206 PRFSILPMSHEIMPGGN-VNITCVAVGSPMPYVKWMQ-GAEDL 246

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 38.1 bits (88), Expect = 6e-05
 Identities = 10/53 (18%), Positives = 17/53 (32%)

Query: 11  AAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 63
                    +++   P  + +       ++C A G P P I W    GT    
Sbjct: 398 DVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRC 450

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 37.5 bits (87), Expect = 7e-05
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 6   LRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP 65
           L +    +     P     P  ++     T A + C A G+P+PEI W + D   V    
Sbjct: 96  LTVLREDQIPRGFPTIDMGPQLKVVERTRT-ATMLCAASGNPDPEITWFK-DFLPVDTSN 153

Query: 66  GLRKYKYIF 74
              + K + 
Sbjct: 154 NNGRIKQLR 162

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 35.9 bits (83), Expect = 3e-04
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
          P F + P ++   S    A   C A G P P+I+W +  G  V
Sbjct: 7  PRFTRTPVDQTGVSGGV-ASFICQATGDPRPKIVWNK-KGKKV 47

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 36.5 bits (85), Expect = 8e-05
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
          P FI+ P N          +++    G P P++ W   +G  V
Sbjct: 6  PRFIQVPENMSIDEGRF-CRMDFKVSGLPAPDVSWYL-NGRTV 46

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 36.5 bits (85), Expect = 8e-05
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
          P       N+      +  +V CTA G+P P+I+W + D   + +  G+ 
Sbjct: 11 PTITGNLENQTTSIGES-IEVSCTASGNPPPQIMWFK-DNETLVEDSGIV 58

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 37.5 bits (87), Expect = 8e-05
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
          G   +  P            ++ C+  G   P+I W++ DG  V ++  L 
Sbjct: 2  GLKLMGAPVKLTVSQGQP-VKLNCSVEGMEEPDIQWVK-DGAVVQNLDQLY 50

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 36.2 bits (84), Expect = 9e-05
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT 59
          PI ++ P N+    + T A ++C A G P P I W++   T
Sbjct: 9  PIILQGPANQTLAVDGT-ALLKCKATGDPLPVISWLKEGFT 48

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 36.1 bits (84), Expect = 1e-04
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD 63
          P+ +    +    S++  A+    A G P P  IW + DG A+  
Sbjct: 7  PVIVTGLQDTTVSSDSV-AKFAVKATGEPRPTAIWTK-DGKAITQ 49

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 36.2 bits (84), Expect = 1e-04
 Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT 59
          P+FI +P ++      +  ++EC     P P++ W R++  
Sbjct: 16 PMFIYKPQSKKVLEGDS-VKLECQISAIPPPKLFWKRNNEM 55

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 36.8 bits (85), Expect = 1e-04
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKYIF 74
          P F K   +      +  A+ +C   G P+PE++W + D      V   R ++  +
Sbjct: 42 PYFTKTILDMEVVEGSA-ARFDCKVEGYPDPEVMWFK-DD---NPVKESRHFQIDY 92

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 9/62 (14%), Positives = 14/62 (22%), Gaps = 1/62 (1%)

Query: 1   MYLSLLRLTMAAED-DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT 59
                    +                  ++        Q  C A G P P I+W+     
Sbjct: 366 KEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKH 425

Query: 60  AV 61
            V
Sbjct: 426 LV 427

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 36.7 bits (85), Expect = 2e-04
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
             F++ P N I       A +EC   G P P   W+R + 
Sbjct: 222 LYFLQRPSNVIAIEGKD-AVLECCVSGYPPPSFTWLRGEE 260

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 36.4 bits (84), Expect = 2e-04
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRKYK 71
             F+ +  +   F   T   ++C   G P P I W + +   +  +PG  +  
Sbjct: 122 LRFLSQTESITAFMGDT-VLLKCEVIGDPMPTIHWQK-NQQDLNPIPGDSRVV 172

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 35.6 bits (82), Expect = 4e-04
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGS-PNPEIIWIRSDGTAVGDVPGLRKY 70
            F+ EP + +         + C+A      P I W + DG  +      RK 
Sbjct: 22 LHFVSEPSDAVTMRGGN-VLLNCSAESDRGVPVIKWKK-DGLILALGMDDRKQ 72

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 35.2 bits (81), Expect = 6e-04
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
           P F+  P N   + +    + EC   G P P + W++ +G  V
Sbjct: 313 PWFLNHPSNLYAYESMD-IEFECAVSGKPVPTVNWMK-NGDVV 353

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 35.9 bits (83), Expect = 2e-04
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
          P+  + P N+    + T   + C A GSP P I+W + DG  V
Sbjct: 9  PVIRQGPVNQTVAVDGT-FVLSCVATGSPVPTILWRK-DGVLV 49

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 35.1 bits (81), Expect = 2e-04
 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG 66
             + EP         T   + C     P+P+I W++ DG  +   P 
Sbjct: 11 VQLVVEPEGGAVAPGGT-VTLTCEVPAQPSPQIHWMK-DGVPLPLPPS 56

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 35.4 bits (82), Expect = 2e-04
 Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
             + +P +   +   + A+  C   G P P + W+R  G  +
Sbjct: 15 ARILTKPRSMTVYEGES-ARFSCDTDGEPVPTVTWLR-KGQVL 55

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 35.4 bits (82), Expect = 2e-04
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
          P F++ P +          +++C   G P P++ W   DG  V
Sbjct: 10 PHFLQAPGDLTVQEGKL-CRMDCKVSGLPTPDLSWQL-DGKPV 50

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 36.0 bits (83), Expect = 3e-04
 Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
              + +  +           +EC A G+P P+I W +   
Sbjct: 114 ADIVVQFKDVYALMGQN-VTLECFALGNPVPDIRWRKVLE 152

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 36.2 bits (83), Expect = 3e-04
 Identities = 10/46 (21%), Positives = 17/46 (36%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV 64
             +++     ++   T   Q+ C ARG P  E+ W      A    
Sbjct: 103 ASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSH 148

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 35.9 bits (83), Expect = 3e-04
 Identities = 7/55 (12%), Positives = 15/55 (27%), Gaps = 2/55 (3%)

Query: 7   RLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
            L +        P  ++               ++    G P+P I W +     +
Sbjct: 93  SLEVEVPAKIHLPKTLEGMGAVHALRGEV-VSIKIPFSGKPDPVITWQK-GQDLI 145

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 35.9 bits (83), Expect = 3e-04
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
          P F +E  N      +  A + C   G P P + W R  G  +
Sbjct: 5  PHFKEELRNLNVRYQSN-ATLVCKVTGHPKPIVKWYR-QGKEI 45

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 36.1 bits (83), Expect = 3e-04
 Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 1/51 (1%)

Query: 18  GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
           GP      P    + +     + C A  +P  +  W   +GT       L 
Sbjct: 202 GPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFV-NGTFQQSTQELF 251

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 35.6 bits (82), Expect = 4e-04
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 2   YLSLLRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
           Y    RL  AA  +      +   P+ +         + C   G P PE+ W++ +  A+
Sbjct: 100 YAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKAL 158

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 35.8 bits (82), Expect = 4e-04
 Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 2/40 (5%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
            ++    P      N     + C +   P P + W+  D 
Sbjct: 141 LLYTLRRPYFRKMENQD--ALVCISESVPEPIVEWVLCDS 178

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 35.7 bits (82), Expect = 4e-04
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 2   YLSLLRLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
           Y    RL  AA  +      +   P+ +         + C   G P PE+ W++ +  A+
Sbjct: 205 YAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKAL 263

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 35.7 bits (82), Expect = 4e-04
 Identities = 7/52 (13%), Positives = 14/52 (26%), Gaps = 1/52 (1%)

Query: 7   RLTMAAEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
            L +         +    P N+     +   +  C       P I W++   
Sbjct: 103 TLDVLERSPHRPILQAGLPANQTAVLGSD-VEFHCKVYSDAQPHIQWLKHVE 153

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 35.7 bits (82), Expect = 4e-04
 Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 4/58 (6%)

Query: 19 PIFIKEPPNRI-DFSNTTGAQV--ECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKYI 73
          P + +         +      V   C A G+P P I W++ +G        +   K  
Sbjct: 12 PYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREFRGEHRIGGIKLR 68

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 35.4 bits (82), Expect = 5e-04
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
          P   KE  +         AQ+ C   G P P+I W R  G  +
Sbjct: 8  PGIRKEMKDVTTKLGEA-AQLSCQIVGRPLPDIKWYR-FGKEL 48

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 35.3 bits (81), Expect = 5e-04
 Identities = 7/39 (17%), Positives = 10/39 (25%), Gaps = 1/39 (2%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD 57
            +    P N          +  C       P I WI+  
Sbjct: 119 ILQAGLPANASTVVGGD-VEFVCKVYSDAQPHIQWIKHV 156

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 34.5 bits (79), Expect = 9e-04
 Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 4/57 (7%)

Query: 19 PIFIKEPPNR-IDFSNTTGAQV--ECTARGSPNPEIIWIRSDGTAVGDVPGLRKYKY 72
          P +           +      V   C A G+P P + W++ +G        +  YK 
Sbjct: 16 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKV 71

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 34.7 bits (79), Expect = 5e-04
 Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 1/40 (2%)

Query: 14 DDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIW 53
          DD   P    +P  +     +      C+A  S +  + +
Sbjct: 6  DDFPXPQITVQPETQSAIXGSD-VSFTCSAASSSDSPMTF 44

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 35.5 bits (81), Expect = 5e-04
 Identities = 4/53 (7%), Positives = 12/53 (22%), Gaps = 1/53 (1%)

Query: 16  TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
            L    +    +       +   +   +    +P +      G  +     L 
Sbjct: 94  QLLVFGLTANSDTHLLQGQS-LTLTLESPPGSSPSVQCRSPRGKNIQGGKTLS 145

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 35.3 bits (81), Expect = 5e-04
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSDGTAVGDVPG 66
           P F++EP +R   +NT    + C A+G P P +++W++ D   +   PG
Sbjct: 107 PYFLEEPEDRTVAANTP-FNLSCQAQGPPEPVDLLWLQ-DAVPLATAPG 153

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 34.2 bits (79), Expect = 6e-04
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR 55
          P F     +           ++C+ RG+P P I W+ 
Sbjct: 12 PSFSSVLKDCAVIEGQD-FVLQCSVRGTPVPRITWLL 47

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 35.1 bits (80), Expect = 6e-04
 Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 1/46 (2%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV 64
           P    + PN           + C   G    +  WI ++      V
Sbjct: 159 PTLKVQVPNASVDVGDD-VLLRCQVEGRGLEQAGWILTELEQSATV 203

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 34.0 bits (78), Expect = 7e-04
 Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 1/44 (2%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTAR-GSPNPEIIWIRSDGTAV 61
           +   E                CTA+  SP   ++W R     +
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL 53

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 35.1 bits (80), Expect = 7e-04
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
           P       N+      +  +V CTA G+P P+I+W + D   +
Sbjct: 667 PTITGNLENQTTSIGES-IEVSCTASGNPPPQIMWFK-DNETL 707

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 34.9 bits (80), Expect = 7e-04
 Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV 61
           P    EP   +       AQ+ C+A  +     + ++   T +
Sbjct: 187 PQIKLEPSKLVRIRGEA-AQIVCSATNAEVGFNVILKRGDTKL 228

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 34.6 bits (79), Expect = 8e-04
 Identities = 5/57 (8%), Positives = 14/57 (24%), Gaps = 1/57 (1%)

Query: 12  AEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR 68
            E+  L    +    +       +   +   +    +P +      G  +     L 
Sbjct: 91  KEEVQLLVFGLTANSDTHLLQGQS-LTLTLESPPGSSPSVQCRSPRGKNIQGGKTLS 146

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 33.8 bits (78), Expect = 8e-04
 Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 1/37 (2%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR 55
          P F     ++          +    +G P P + W+R
Sbjct: 6  PTFKVSLMDQSVREGQD-VIMSIRVQGEPKPVVSWLR 41

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 34.6 bits (79), Expect = 9e-04
 Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 19  PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG 62
           P     P   +       AQ+ C+A        ++++ + T + 
Sbjct: 187 PALTLVPAELVRIRGEA-AQIVCSASSVDVNFDVFLQHNNTKLA 229

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	74
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.26
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.14
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.12
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.09
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.07
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.03
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.02
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.01
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.0
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	98.98
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	98.97
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	98.97
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	98.96
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	98.95
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	98.92
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	98.91
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	98.9
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	98.9
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	98.9
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	98.86
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	98.86
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	98.85
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	98.84
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	98.84
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	98.82
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	98.82
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	98.81
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	98.81
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	98.81
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	98.81
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	98.8
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	98.8
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	98.76
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	98.75
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	98.74
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	98.74
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	98.74
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	98.73
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	98.72
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	98.72
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	98.7
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	98.7
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	98.7
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	98.69
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	98.68
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	98.68
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	98.68
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	98.67
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	98.66
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	98.66
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	98.66
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	98.65
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	98.65
2ens_A	96	Advanced glycosylation END product-specific recept	98.65
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	98.65
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	98.64
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	98.64
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	98.62
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	98.62
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	98.62
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	98.61
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	98.61
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	98.61
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	98.6
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	98.59
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	98.59
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	98.56
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	98.56
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	98.55
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	98.55
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	98.55
1he7_A	126	High affinity nerve growth factor receptor; transf	98.54
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.54
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	98.53
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	98.53
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	98.52
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	98.52
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	98.52
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	98.51
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	98.51
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.5
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	98.5
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	98.5
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	98.5
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	98.48
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	98.48
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	98.48
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	98.47
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	98.46
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	98.46
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	98.46
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	98.45
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	98.45
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.45
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.45
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	98.45
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	98.45
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	98.42
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	98.42
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	98.41
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	98.4
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	98.39
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	98.38
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	98.38
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	98.38
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	98.38
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	98.36
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	98.36
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	98.35
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	98.35
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	98.35
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.34
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	98.34
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.33
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.33
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	98.33
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	98.33
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	98.32
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	98.32
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	98.31
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	98.31
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	98.28
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	98.28
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	98.27
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.27
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	98.26
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.26
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	98.26
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.26
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	98.26
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	98.25
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.25
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	98.25
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	98.24
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	98.23
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	98.23
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	98.22
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	98.21
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	98.21
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.2
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.19
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	98.18
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	98.18
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	98.17
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	98.17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.16
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	98.16
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	98.15
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	98.15
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	98.15
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	98.14
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	98.14
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.13
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	98.12
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.12
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	98.11
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.11
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	98.09
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.09
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	98.09
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.09
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	98.09
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	98.09
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	98.08
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	98.07
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	98.07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.06
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	98.06
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	98.06
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	98.04
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	98.04
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	98.04
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	98.03
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	98.03
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	98.03
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	98.03
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	98.02
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.02
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	98.02
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	98.02
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	98.02
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.02
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.02
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	98.0
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.0
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	97.99
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	97.99
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	97.99
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	97.99
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	97.99
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	97.98
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	97.98
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	97.98
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	97.97
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	97.97
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.97
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	97.97
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	97.97
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	97.97
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	97.96
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	97.96
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	97.95
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	97.95
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	97.95
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	97.94
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	97.94
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	97.94
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	97.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.93
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	97.93
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	97.93
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	97.93
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	97.93
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	97.92
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	97.92
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	97.92
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	97.92
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	97.92
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	97.91
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	97.91
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	97.91
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	97.9
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	97.9
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	97.9
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	97.9
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	97.9
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	97.9
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	97.89
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	97.89
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	97.89
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	97.89
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	97.88
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	97.88
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	97.88
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	97.88
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.88
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	97.88
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	97.87
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	97.87
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	97.87
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	97.87
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	97.87
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	97.86
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	97.86
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	97.86
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	97.86
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	97.85
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	97.85
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	97.84
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	97.84
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	97.84
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	97.83
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	97.83
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	97.83
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	97.83
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	97.83
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	97.83
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	97.82
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	97.82
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	97.82
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	97.82
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	97.81
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	97.81
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	97.81
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	97.81
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	97.8
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	97.8
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	97.8
3sob_L	237	Antibody light chain; beta propeller, protein bind	97.8
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	97.79
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	97.78
3umt_A	256	SCFV heavy chain and light chain; stability engine	97.78
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	97.78
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	97.78
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	97.77
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	97.77
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	97.77
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	97.76
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	97.76
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	97.74
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	97.74
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	97.74
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	97.74
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	97.73
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	97.73
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	97.73
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	97.72
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	97.72
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	97.72
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	97.72
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	97.71
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	97.71
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	97.71
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	97.7
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	97.7
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	97.7
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	97.69
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	97.69
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	97.69
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	97.69
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	97.69
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	97.69
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	97.68
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	97.68
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	97.68
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	97.67
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	97.67
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	97.67
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	97.67
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	97.67
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	97.67
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	97.65
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	97.65
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	97.64
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	97.64
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	97.64
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	97.64
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	97.63
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	97.63
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	97.62
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	97.62
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	97.61
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	97.61
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	97.61
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	97.6
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	97.59
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	97.59
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	97.58
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	97.58
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	97.58
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	97.57
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	97.56
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	97.56
1k5n_B	100	Beta-2-microglobulin, light chain; MHC(major histo	97.56
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	97.55
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	97.55
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	97.54
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	96.69
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	97.54
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	97.54
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	97.54
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	97.53
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	97.51
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	97.51
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	97.51
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	97.51
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	97.5
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	97.5
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	97.5
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	97.5
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	97.5
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	97.49
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	97.49
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	97.49
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	97.48
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	97.48
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	97.48
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	97.48
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	97.48
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	97.48
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	97.47
1c5d_H	215	Monoclonal antibody against the main immunogenic t	97.47
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	97.47
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	97.46
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	97.45
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	97.45
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	97.45
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	97.44
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	97.44
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	97.43
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	97.43
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	97.43
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	97.42
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	97.42
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	97.42
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	97.42
1lk2_B	99	Beta-2-microglobulin; class I MHC-peptide complex,	97.41
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	97.41
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	97.41
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	97.41
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	97.41
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	97.41
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	97.4
1xt5_A	135	Variable region-containing chitin-binding protein	97.4
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	97.4
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	97.4
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	97.4
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	97.4
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	97.4
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	97.39
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	97.37
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	97.37
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	97.37
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	97.36
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	97.35
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	97.35
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	97.35
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	97.34
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	97.34
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	97.34
1bii_B	119	Beta-2 microglobulin, MHC class I H-2DD; complex (	97.34
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	97.33
1nez_G	128	T-cell surface glycoprotein CD8 alpha chain; immun	97.32
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	97.32
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	97.32
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	97.31
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	97.3
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	97.3
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	97.29
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	97.29
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	97.28
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	97.28
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	97.28
3ux9_B	256	SCFV antibody; five helices, long loop connecting	97.28
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	97.27
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	97.27
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	97.27
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	97.27
3gbl_A	97	BETA2-microglobulin; immune response, immunoglobul	97.26
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	97.26
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	97.26
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	97.25
3ux9_B	256	SCFV antibody; five helices, long loop connecting	97.25
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	97.24
3khq_A	133	B-cell antigen receptor complex-associated protei	97.24
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	97.24
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	97.23
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	97.22
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	97.21
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	97.21
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	97.2
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	97.2
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	97.2
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	97.2
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	97.19
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	97.18
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	97.18
3c5j_A	181	HLA class II histocompatibility antigen, DR alpha;	97.17
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	97.17
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	97.16
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	97.15
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	97.14
2otu_A	115	FV light chain variable domain; antibody FV polygl	97.14
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	97.13
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	97.13
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	97.13
3c5j_B	190	MHC class II antigen; HLA, MHC class II, glycoprot	97.13
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	97.13
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	97.13
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	97.12
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	97.12
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	97.11
3umt_A	256	SCFV heavy chain and light chain; stability engine	97.1
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	97.09
3p73_B	99	Beta-2-microglobulin; IG-like C1-type (immunoglobu	97.08
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	97.08
1uvq_B	198	HLA class II histocompatibility antigen; immunolog	97.06
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	97.06
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	97.06
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	97.06
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	97.06
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	97.06
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	97.06
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	97.03
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	97.02
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	97.01
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	97.01
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	97.01
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	97.01
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	97.0
1uvq_A	197	HLA class II histocompatibility antigen; immunolog	96.99
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	96.97
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	96.97
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	96.94
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	96.94
3o81_A	119	Beta-2-microglobulin; IG-like C1-type (immunoglobu	96.94
1c5d_H	215	Monoclonal antibody against the main immunogenic t	96.93
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	96.93
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	96.93
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	96.91
1a2y_B	116	IGG1-kappa D1.3 FV (heavy chain); complex (immunog	96.91
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	96.9
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	96.89
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	96.89
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	96.87
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	96.87
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	96.86
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	96.86
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	96.85
1iak_A	199	MHC class II I-AK; histocompatibility antigen, pep	96.85
3jts_B	119	Beta-2-microglobulin; alpha helix, beta sheet, bet	96.83
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	96.79
1n4x_H	120	Immunoglobulin heavy chain variable region; immune	96.79
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	96.79
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	96.78
1kxv_C	121	Camelid VHH domain CAB10; beta 8 alpha 8, beta bar	96.78
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	96.78
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	96.77
1u9k_A	114	Triggering receptor expressed on myeloid cells 1;	96.76
3r8b_B	125	G5-8, enterotoxin type B; immunoglobulin-like, OB-	96.76

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.26  E-value=1.9e-11  Score=74.07  Aligned_cols=50  Identities=22%  Similarity=0.584  Sum_probs=41.2

Q ss_pred             CCCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         14 DDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        14 ~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      ....+|.|+..| +++.+..|+.+.|.|.|.|+|.|+|+|++ ||..|....
T Consensus         9 ~~~~pP~f~~~p-~~~~v~~G~~~~l~C~~~G~P~p~v~W~k-~g~~l~~~~   58 (107)
T 3knb_B            9 DQGSPPCFLRFP-RPVRVVSGAEAELKCVVLGEPPPVVVWEK-GGQQLAASE   58 (107)
T ss_dssp             -CCEEEEEEECC-CCEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCCS
T ss_pred             CCCCCCEEEeCC-CcEEEeCCCcEEEEEEEEEecCCEEEEEE-Cccccccee
Confidence            345689999986 55667889999999999999999999996 888876544

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.14  E-value=4.2e-11  Score=71.46  Aligned_cols=48  Identities=23%  Similarity=0.477  Sum_probs=40.1

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG   66 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~   66 (74)
                      .+|.|+.. ++++.+..|+.+.|.|.|.|+|.|+|+|++ ||.+|....+
T Consensus         4 ~PP~i~~~-p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k-~g~~i~~~~~   51 (100)
T 3knb_A            4 IPPKIEAL-PSDISIDEGKVLTVACAFTGEPTPEVTWSC-GGRKIHSQEQ   51 (100)
T ss_dssp             EEEEECCC-CSEEEEETTSEEEEEEEEEEESCCEEEEEE-TTEECCTTGG
T ss_pred             CCCEEEeC-CCcEEEeCCCeEEEEEEEEEecCCEEEEEE-CceEeeeecc
Confidence            57888876 566778889999999999999999999997 8888865543

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.12  E-value=1.1e-10  Score=80.14  Aligned_cols=52  Identities=79%  Similarity=1.404  Sum_probs=45.6

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCCce
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR   68 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~~r   68 (74)
                      .+|.|+.+|++.+.+.+|+.+.|.|.|.|+|.|+|+|++.||.++...++.+
T Consensus         2 ~~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~   53 (388)
T 2v5m_A            2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLR   53 (388)
T ss_dssp             EEEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTB
T ss_pred             CCCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCce
Confidence            5899999999888888998999999999999999999988898887655444

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.09  E-value=5.9e-10  Score=64.28  Aligned_cols=49  Identities=16%  Similarity=0.368  Sum_probs=40.2

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG   66 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~   66 (74)
                      ..+|.|+..|.+ +.+..|+.+.|.|.|.|.|.|+|+|++ ||..+.....
T Consensus         3 ~~~P~~~~~~~~-~~v~~G~~v~l~C~~~g~p~p~v~W~k-~g~~~~~~~~   51 (99)
T 1g1c_A            3 MEAPKIFERIQS-QTVGQGSDAHFRVRVVGKPDPECEWYK-NGVKIERSDR   51 (99)
T ss_dssp             CEEEEEEECCCC-EEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCCSS
T ss_pred             CCCCceEecCcc-eEEcCCCcEEEEEEEEEeCCCEEEEEE-CCEECCCCCC
Confidence            468999998654 557788899999999999999999996 7887765443

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.07  E-value=1.8e-10  Score=86.73  Aligned_cols=56  Identities=75%  Similarity=1.338  Sum_probs=47.4

Q ss_pred             CCCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCCceE
Q psy11558         14 DDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRK   69 (74)
Q Consensus        14 ~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~~r~   69 (74)
                      ....+|.|+.+|++.+.+.+|++++|+|.|.|+|.|+|+|+++||..+...++.++
T Consensus        34 ~~~~~P~~~~~p~~~~~~~~g~~~~l~C~a~g~p~p~~~W~k~~g~~~~~~~~~~~   89 (816)
T 3dmk_A           34 ADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQ   89 (816)
T ss_dssp             --CEEEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBE
T ss_pred             cccCCCcEEeCCCCeEEEECCCCeEEEeeecCCCCCEEEEEeCCCCCccCCCceEE
Confidence            34567999999998888999999999999999999999999889998876655443

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.03  E-value=1.4e-09  Score=63.26  Aligned_cols=49  Identities=10%  Similarity=0.233  Sum_probs=40.3

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG   66 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~   66 (74)
                      ..+|.|+..| ..+.+..|+.+.|.|.+.|+|.|+|+|++ ||..+.....
T Consensus         6 ~~~P~~~~~~-~~~~v~~G~~v~l~C~~~g~p~p~i~W~k-~~~~~~~~~~   54 (103)
T 3qp3_A            6 DHAPRITLRM-RSHRVPCGQNTRFILNVQSKPTAEVKWYH-NGVELQESSK   54 (103)
T ss_dssp             CEEEEEEECC-CCEEEETTCCEEEEEEEEEESCCEEEEEE-TTEECCCCSS
T ss_pred             CCCCEEEeCC-cceEEeCCCeEEEEEEEEecCCCEEEEEE-CCEECCCCCC
Confidence            4688999886 55567788899999999999999999996 7887765543

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.02  E-value=6.4e-10  Score=64.26  Aligned_cols=48  Identities=21%  Similarity=0.457  Sum_probs=39.5

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      ..+|.|+..| ..+.+..|+.+.|.|.|.|+|.|+|+|++ ||..+....
T Consensus         3 ~~~P~~~~~p-~~~~~~~G~~~~l~C~~~g~p~p~v~W~~-~g~~~~~~~   50 (100)
T 2kdg_A            3 MGPPRFIQVP-ENMSIDEGRFCRMDFKVSGLPAPDVSWYL-NGRTVQSDD   50 (100)
T ss_dssp             CEEEECCCCC-CCEEEETTCCEEEEEECEEESCCEEEEEE-TTEEECCCS
T ss_pred             CCCCeEEeCC-CCEEecCCCEEEEEEEEEeeCCCEEEEEE-CCEECcCCC
Confidence            4578888875 55567788899999999999999999997 788776554

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.01  E-value=3.6e-10  Score=65.50  Aligned_cols=47  Identities=17%  Similarity=0.482  Sum_probs=39.4

Q ss_pred             CccceEEEcC---CCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         16 TLGPIFIKEP---PNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        16 ~~~P~fv~~P---p~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      ..+|.|+..|   ++.+.+..|+.+.|.|.|.|.|.|+|+|++ ||..+..
T Consensus         2 ~~~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~-~~~~~~~   51 (100)
T 3caf_A            2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQ   51 (100)
T ss_dssp             CEEEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEE-TTEECCG
T ss_pred             CCCCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEE-CCEEccc
Confidence            4689999876   456777889999999999999999999996 7777654

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.00  E-value=2e-09  Score=62.03  Aligned_cols=47  Identities=17%  Similarity=0.343  Sum_probs=38.5

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      ..+|.|+..|.. +.+..|+.+.|.|.|.|+|.|+|+|++ ||..+...
T Consensus         3 ~~~P~~~~~~~~-~~v~~G~~v~l~C~~~g~p~p~v~W~k-~~~~~~~~   49 (99)
T 1u2h_A            3 KAPPTFKVSLMD-QSVREGQDVIMSIRVQGEPKPVVSWLR-NRQPVRPD   49 (99)
T ss_dssp             CEEEEEEECCCC-EEEETTCCEEEEEEEEEESCCEEEEEE-TTEECCCB
T ss_pred             CCCCEEEEcCCc-eEecCCCEEEEEEEEEEcCCCEEEEEE-CCEECCCC
Confidence            467899988654 467788899999999999999999997 77776543

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=98.98  E-value=2.9e-09  Score=61.17  Aligned_cols=49  Identities=24%  Similarity=0.459  Sum_probs=40.0

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      ...+|.|+..| ..+.+..|+.+.|.|.+.|.|.|+|+|++ ||..+....
T Consensus         3 ~~~~P~i~~~~-~~~~v~~G~~~~l~C~~~g~p~p~v~W~~-~g~~~~~~~   51 (99)
T 3puc_A            3 ISSKPVIVTGL-QDTTVSSDSVAKFAVKATGEPRPTAIWTK-DGKAITQGG   51 (99)
T ss_dssp             CCEEEEEEECC-CCEEEESSSCEEEEEEEEEESCCEEEEEE-TTEECCSSS
T ss_pred             CCCCCEEEecC-ccEEEeCCCcEEEEEEEEecCCCEEEEEE-CCEECcCCC
Confidence            45688999886 45567788899999999999999999997 787775543

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.97  E-value=1.3e-09  Score=64.82  Aligned_cols=49  Identities=12%  Similarity=0.256  Sum_probs=39.4

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      ...+|.|+.. ++.+.+..|+.+.|.|.|.|+|.|+|+|++ ||..+....
T Consensus         4 ~~~pp~i~~~-~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k-~~~~~~~~~   52 (114)
T 2cqv_A            4 GSSGPQIIQF-PEDQKVRAGESVELFGKVTGTQPITCTWMK-FRKQIQESE   52 (114)
T ss_dssp             CCCCCEESCC-CCSEEEETTCCEEEEEEEESSSSCEEEEEE-SSSBCCCSS
T ss_pred             CCCCCEEEeC-CCCeEEeCCCeEEEEEEEEcCCCCEEEEEE-CCEECcCCC
Confidence            4468888876 456677889899999999999999999997 676665433

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=98.97  E-value=9.8e-10  Score=65.52  Aligned_cols=48  Identities=27%  Similarity=0.622  Sum_probs=39.5

Q ss_pred             CCCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         14 DDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        14 ~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      .+..+|.|+..|. .+.+..|+.+.|.|.|.|+|.|+|+|++ ||..+..
T Consensus         5 ~~~~pP~i~~~p~-~~~v~~G~~v~L~C~~~g~P~p~v~W~k-~~~~~~~   52 (117)
T 2v9t_A            5 QEDFPPRIVEHPS-DLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVET   52 (117)
T ss_dssp             CCCEEEEEEECCC-CEEECTTCCEEECCEEEEESCCEEEEEE-TTEECCC
T ss_pred             cccCCCeeEcCCC-CEEEcCCCcEEEEEECCccCCCeEEEEE-CCEeccc
Confidence            3457899999864 5567888899999999999999999997 6777653

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=98.96  E-value=1e-09  Score=76.66  Aligned_cols=50  Identities=30%  Similarity=0.607  Sum_probs=39.1

Q ss_pred             CccceEEEcCCCcEEe--cCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCC
Q psy11558         16 TLGPIFIKEPPNRIDF--SNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG   66 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~--~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~   66 (74)
                      ..+|+|+++|++.+..  .+|+.+.|.|.|.|+|.|+|+|++ ||.++....+
T Consensus         3 ~~~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k-~g~~l~~~~~   54 (384)
T 3kld_A            3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKL-NGTDVDIGMD   54 (384)
T ss_dssp             CEEEEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEE-TTEECCC---
T ss_pred             CCCCEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEE-CCEECcCCCC
Confidence            4689999997766532  467779999999999999999996 8988865443

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=98.95  E-value=1.4e-09  Score=62.67  Aligned_cols=44  Identities=18%  Similarity=0.404  Sum_probs=36.1

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCC--eeecC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG--TAVGD   63 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG--~~i~~   63 (74)
                      +|.|... +..+.+..|+.+.|.|.|.|+|.|+|+|++ ||  .++..
T Consensus         2 ~P~i~~~-~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k-~~~~~~~~~   47 (93)
T 1wit_A            2 KPKILTA-SRKIKIKAGFTHNLEVDFIGAPDPTATWTV-GDSGAALAP   47 (93)
T ss_dssp             CCEECCC-CCEEEECTTBCCEEEEEEECCSSCEEEEEC-STTTCBCST
T ss_pred             CCeEEcC-CCceEEeCCCEEEEEEEEEEcCCCEEEEEE-CCCCcccCC
Confidence            6888655 567778899999999999999999999997 55  66543

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=2.3e-09  Score=62.98  Aligned_cols=50  Identities=22%  Similarity=0.578  Sum_probs=40.3

Q ss_pred             CCCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         14 DDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        14 ~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      ....+|.|+..| ..+.+..|+.+.|.|.|.|+|.|+|+|++ ||..+....
T Consensus         5 ~~~~~P~i~~~~-~~~~v~~G~~v~l~C~~~g~p~p~v~W~~-~g~~~~~~~   54 (110)
T 2dm3_A            5 SSGFRPHFLQAP-GDLTVQEGKLCRMDCKVSGLPTPDLSWQL-DGKPVRPDS   54 (110)
T ss_dssp             CCCCCCEEEECC-CEEEEESSSCBCCEEEEECSSCCEEECBB-SSSBCCCCS
T ss_pred             CCCCCCcEEeCC-CcEEEeCCCEEEEEEEEEEcCCCEEEEEE-CCEECCCCC
Confidence            345689999985 55667888899999999999999999996 777665443

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=4.9e-09  Score=60.74  Aligned_cols=46  Identities=26%  Similarity=0.582  Sum_probs=37.9

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      ...+|.|+..|. .+.+..|+.+.|.|.|.|+|.|+|+|++ ||..+.
T Consensus         5 ~~~~P~i~~~p~-~~~v~~G~~~~l~C~~~g~p~p~v~W~~-~~~~~~   50 (100)
T 2edj_A            5 SSGPPIILQGPA-NQTLAVDGTALLKCKATGDPLPVISWLK-EGFTFP   50 (100)
T ss_dssp             CCSSCEEEECCC-CEEEESSSEEEECCEEECSSCCEEEEEE-SSSEES
T ss_pred             CCCCCEEEeCcC-CEEEcCCCcEEEEEEEEEcCCCEEEEEE-CCEECC
Confidence            457889998864 4557788889999999999999999997 676665

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.90  E-value=3.3e-09  Score=62.54  Aligned_cols=48  Identities=21%  Similarity=0.531  Sum_probs=39.1

Q ss_pred             CCCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         14 DDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        14 ~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      ....+|.|+..| ..+.+..|+.+.|.|.|.|+|.|+|+|++ ||..+..
T Consensus         4 ~~~~~P~~~~~~-~~~~v~~G~~v~l~C~~~g~p~p~v~W~k-~g~~~~~   51 (110)
T 2dm2_A            4 GSSGAPFFEMKL-KHYKIFEGMPVTFTCRVAGNPKPKIYWFK-DGKQISP   51 (110)
T ss_dssp             CCSCCCCBSSCC-CCEEEETTCCEEEEEEBCCSSCCEEEEEC-SSCBCCT
T ss_pred             CCCCCCEEEecC-cCeEEeCCCeEEEEEEEEecCCCEEEEEE-CCEECCC
Confidence            345688888875 55567788899999999999999999996 7777654

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=2.6e-09  Score=61.85  Aligned_cols=48  Identities=21%  Similarity=0.471  Sum_probs=39.2

Q ss_pred             CCCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         14 DDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        14 ~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      ....+|.|+..|. .+.+..|+.+.|.|.|.|+|.|+|+|++ ||..+..
T Consensus         7 ~~~~~P~~~~~~~-~~~v~~G~~v~l~C~~~g~p~p~v~W~~-~g~~~~~   54 (99)
T 2yr3_A            7 GMEVAPSFSSVLK-DCAVIEGQDFVLQCSVRGTPVPRITWLL-NGQPIQY   54 (99)
T ss_dssp             CCCEEEEEEECCC-CEEECTTCCEEEECEEEEESCCCCEEEE-SSSBCSS
T ss_pred             CcccCCceeecCC-CCEEeCCCeEEEEEEEeeeCCCeEEEEE-CCEECcc
Confidence            3457889998864 5567889899999999999999999997 6766643

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=98.86  E-value=1.9e-08  Score=57.69  Aligned_cols=46  Identities=20%  Similarity=0.354  Sum_probs=36.8

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      .++.|...|. ...+..|+.+.|.|.|.|+|.|+|+|++ ||.++...
T Consensus         2 ~~~~i~~~p~-~~~v~~G~~~~l~C~~~g~p~p~i~W~~-~~~~~~~~   47 (91)
T 3bfo_A            2 SKLQICVEPT-SQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPLTHE   47 (91)
T ss_dssp             CCCEEEECCC-CEEECTTSCEEEECEEECSSCCEEEEEE-TTEECTTC
T ss_pred             CceEEEECCC-ccEecCCCcEEEEEEeccCCCCEEEEEc-CCeeCCcC
Confidence            3567777754 4457788899999999999999999997 78776543

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.85  E-value=3.4e-09  Score=62.76  Aligned_cols=48  Identities=17%  Similarity=0.388  Sum_probs=37.4

Q ss_pred             cceEEEcCCCcEE--ecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCCc
Q psy11558         18 GPIFIKEPPNRID--FSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGL   67 (74)
Q Consensus        18 ~P~fv~~Pp~~v~--~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~~   67 (74)
                      -|.++.+|++++.  ...|+.+.|.|.+.| |.|+|+|++ ||.+|......
T Consensus         3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k-~g~~i~~~~~~   52 (91)
T 2lvc_A            3 MPVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYK-DGQEVEESDFV   52 (91)
T ss_dssp             CCCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEE-TTSCCCCCSSC
T ss_pred             CCcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEE-CCEEeeeeeee
Confidence            4666777777644  357888999999987 999999997 88888765543

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=98.84  E-value=5.3e-09  Score=64.08  Aligned_cols=46  Identities=26%  Similarity=0.426  Sum_probs=34.8

Q ss_pred             cCCCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCee
Q psy11558         13 EDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTA   60 (74)
Q Consensus        13 ~~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~   60 (74)
                      .....+|.|++.|. .+.+..|+.+.|.|.|.|+|.|+|+|++ +|..
T Consensus        16 ~~~~~pP~~~~~p~-~~~v~~G~~v~L~C~~~g~P~p~i~W~k-~~~~   61 (137)
T 3qr2_A           16 PRGSHMAGFVQAPL-SQQRWVGGSVELHCEAVGSPVPEIQWWF-EGQG   61 (137)
T ss_dssp             -----CCEEEECCC-CEEEETTSCEEEEEEEECSSCCEEEEEE-EESS
T ss_pred             CCCCCCCeEEcCCC-CEEEeCCCCEEEEEEEeeecCCeEEEEE-CCCC
Confidence            34477999999864 5567788899999999999999999998 4443

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.84  E-value=5.8e-09  Score=62.99  Aligned_cols=47  Identities=23%  Similarity=0.539  Sum_probs=38.9

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      ...+|.|++.|.+ +.+..|+.+.|.|.|.|+|.|+|+|++ ||..+..
T Consensus        12 ~~~~p~f~~~p~~-~~v~~G~~v~L~C~~~g~p~p~v~W~k-~~~~~~~   58 (116)
T 2kkq_A           12 HKRAPMFIYKPQS-KKVLEGDSVKLECQISAIPPPKLFWKR-NNEMVQF   58 (116)
T ss_dssp             CCBCCCBSSCCCC-EEEETTEEEEEEEEBCCBSCCEEEEEE-TTEECCC
T ss_pred             CCCCCeEEeCCCc-EEEeCCCcEEEEEEEeccCCCEEEEEE-CCEECcC
Confidence            3568899998655 567788899999999999999999997 6776653

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=98.82  E-value=2e-08  Score=57.95  Aligned_cols=44  Identities=5%  Similarity=0.077  Sum_probs=36.2

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEccc-CCCeEEEEeCCCeeecCCC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGS-PNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~P~I~W~~~dG~~i~~~~   65 (74)
                      ++..|+..+.+..|+.+.|.|.+.|. |.|+|+|++ ||..+....
T Consensus         3 ~v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~-~~~~~~~~~   47 (97)
T 2bk8_A            3 MVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYF-GVRQLENSE   47 (97)
T ss_dssp             CEECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEE-TTEECCSSS
T ss_pred             ceeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEE-CCEECcCCC
Confidence            35567778888899999999999997 999999997 777765443

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=7.6e-09  Score=61.94  Aligned_cols=47  Identities=13%  Similarity=0.241  Sum_probs=38.4

Q ss_pred             CCccceEEEc--CCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         15 DTLGPIFIKE--PPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        15 ~~~~P~fv~~--Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      ...+|.|...  +++.+.+..|+.+.|.|.|.|+|.|+|+|++ ||..+.
T Consensus        18 v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k-~g~~l~   66 (118)
T 2e7c_A           18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK-GGAPLD   66 (118)
T ss_dssp             CSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEE-TTEECC
T ss_pred             eccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEE-CCEECC
Confidence            3457888643  4567778889999999999999999999996 787775

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=98.81  E-value=1.8e-08  Score=63.19  Aligned_cols=49  Identities=24%  Similarity=0.655  Sum_probs=40.0

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      ...+|.|+..|.. +.+..|..+.|.|.|.|+|.|+|+|++ ||..+....
T Consensus        38 v~~~P~~~~~~~~-~~v~~G~~v~L~C~~~g~P~p~v~W~k-~g~~~~~~~   86 (154)
T 1fhg_A           38 PHVKPYFTKTILD-MEVVEGSAARFDCKVEGYPDPEVMWFK-DDNPVKESR   86 (154)
T ss_dssp             CCEEEEEEECCCC-EEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCSS
T ss_pred             CCCCCeEEccCCc-EEEeCCCeEEEEEEEEEecCCEEEEEE-CCEECCCCC
Confidence            3468899988654 567888899999999999999999997 787775543

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=5.2e-09  Score=62.70  Aligned_cols=44  Identities=16%  Similarity=0.309  Sum_probs=36.2

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      +.|+.. ++++.+.+|+.+.|.|.+.|.|.|+|+|++ ||..+...
T Consensus        14 ~~~~~~-~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k-~g~~l~~~   57 (115)
T 2cr6_A           14 VHIIED-LEDVDVQEGSSATFRCRISPANYEPVHWFL-DKTPLHAN   57 (115)
T ss_dssp             CEEEEC-CCEEEEETTSCEECCCEEESTTCCSCEEEE-SSCEECCS
T ss_pred             CeEecc-CccEEEeCCCcEEEEEEEcCCCCCccEEEE-CCEECCCC
Confidence            467666 466678889999999999999999999997 77777543

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=98.81  E-value=2.2e-08  Score=58.33  Aligned_cols=48  Identities=15%  Similarity=0.284  Sum_probs=39.9

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      ..+|.|+..|++.+.+..|+.+.|.|.+. .|.|+|+|++ ||..+....
T Consensus         5 ~~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k-~g~~i~~~~   52 (100)
T 2yuv_A            5 SSGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYK-NGQEIRPST   52 (100)
T ss_dssp             SSSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEE-SSCBCCCBT
T ss_pred             CCCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEE-CCEECCCCC
Confidence            46899999987766778888999999999 7999999997 777765443

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=98.81  E-value=2e-08  Score=59.21  Aligned_cols=48  Identities=15%  Similarity=0.102  Sum_probs=38.2

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG   66 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~   66 (74)
                      ..+|.|+..| +++.+.+|+.+.|.|.+.| |.|+|+|++ ||.+|.....
T Consensus         3 ~~~~~~~~~~-~~~~v~~G~~v~l~C~v~~-~~~~v~W~k-~g~~i~~~~~   50 (93)
T 1waa_A            3 MALIEVEKPL-YGVEVFVGETAHFEIELSE-PDVHGQWKL-KGQPLAASPD   50 (93)
T ss_dssp             CCCCCEEECC-CCEEEETTSCEEEEEEESS-SSCCCEEEE-TTEECCCBTT
T ss_pred             CCCcEeeccC-cceEEeCCCCEEEEEEECC-CCCeEEEEE-CCEECcCCCC
Confidence            4567888875 5567888999999999998 568999996 8988876543

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=98.80  E-value=4.9e-09  Score=62.43  Aligned_cols=51  Identities=22%  Similarity=0.567  Sum_probs=40.5

Q ss_pred             cCCCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         13 EDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        13 ~~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      ......|.|+..|. .+.+..|+.+.|.|.|.|+|.|+|+|++ ||..+....
T Consensus         9 ~~~~~~~~i~~~p~-~~~v~~G~~v~L~C~~~g~p~p~v~W~k-~g~~l~~~~   59 (106)
T 1nct_A            9 SKTTLAARILTKPR-SMTVYEGESARFSCDTDGEPVPTVTWLR-KGQVLSTSA   59 (106)
T ss_dssp             CCSSCCCEEEECCC-CEEESSSSCEECCEEEECSSCCBCCBCS-SSSCCTTCS
T ss_pred             CCCCCCCEEEECCC-CEEEeCCCcEEEEEEEEEcCCCEEEEEE-CCEECCCCC
Confidence            34456788988854 5567889999999999999999999986 777665433

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.80  E-value=7.3e-09  Score=61.88  Aligned_cols=48  Identities=27%  Similarity=0.525  Sum_probs=38.7

Q ss_pred             CCCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         14 DDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        14 ~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      ....+|.|+..| ..+.+..|+.+.|.|.|.|+|.|+|+|++ ||..+..
T Consensus         4 ~~~~pP~i~~~p-~~~~v~~G~~v~l~C~~~g~p~p~i~W~k-~g~~~~~   51 (118)
T 2eo9_A            4 GSSGPPVIRQGP-VNQTVAVDGTFVLSCVATGSPVPTILWRK-DGVLVST   51 (118)
T ss_dssp             SCCCSCCCSBCC-CCEEEETTCEEEEECBCCCSSCCEEEEEE-SSSBCCT
T ss_pred             CCCCCCEEEcCC-CCEEEcCCCeEEEEEEEEecCCCEEEEEE-CCEECcC
Confidence            345688888875 44567788899999999999999999997 7776643

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=98.76  E-value=5.2e-08  Score=65.20  Aligned_cols=50  Identities=12%  Similarity=0.331  Sum_probs=41.1

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG   66 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~   66 (74)
                      ..+|.|+..+.+.+.+..|+.+.|.|.|.|+|.|+|+|++ ||.++.....
T Consensus       206 ~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~-~g~~i~~~~~  255 (315)
T 1itb_B          206 PTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKW-NGSVIDEDDP  255 (315)
T ss_dssp             CCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEE-TTEECCTTCS
T ss_pred             CCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEE-CCEECCcccc
Confidence            4678887765555667889899999999999999999997 8988876543

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.75  E-value=9.9e-09  Score=61.37  Aligned_cols=49  Identities=14%  Similarity=0.313  Sum_probs=41.7

Q ss_pred             CCCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         14 DDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        14 ~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      ....+|.|+..+++.+.+..|+.+.|.|.+ ++|.|+|+|++ ||..+...
T Consensus        11 ~~~~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k-~g~~l~~~   59 (104)
T 1pd6_A           11 DEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLK-NGQEIQMS   59 (104)
T ss_dssp             CCSTTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEE-SSSEECCC
T ss_pred             CccCCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEE-CCEECCCC
Confidence            446788999998887778899999999999 79999999997 78777654

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=98.74  E-value=6.9e-09  Score=60.55  Aligned_cols=46  Identities=26%  Similarity=0.567  Sum_probs=31.2

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      ..+|.|+..| ..+....|+.+.|.|.+.|+|.|+|+|++ ||..+..
T Consensus         8 ~~~P~~~~~~-~~~~v~~G~~v~l~C~~~g~p~p~i~W~~-~~~~~~~   53 (108)
T 3kvq_A            8 RVAPTITGNL-ENQTTSIGESIEVSCTASGNPPPQIMWFK-DNETLVE   53 (108)
T ss_dssp             ---CCCBSCC-CCEEEETTCCEEEECBCC----CCEEEEE-SSSBCCC
T ss_pred             cCCCceecCC-CCeEEeCCCeEEEEEECcCcCCCeEEEEE-CCeEccc
Confidence            4578888875 45567788899999999999999999997 6665543

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=98.74  E-value=2.3e-08  Score=64.11  Aligned_cols=48  Identities=27%  Similarity=0.543  Sum_probs=38.8

Q ss_pred             CCCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         14 DDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        14 ~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      ....+|.|+..|.+ +.+..|+.+.|.|.+.|+|.|+|+|++ ||..+..
T Consensus         2 ~~~~~P~~~~~p~~-~~v~~G~~v~L~C~~~g~p~~~v~W~k-~~~~~~~   49 (212)
T 2yd6_A            2 TGETPPRFTRTPVD-QTGVSGGVASFICQATGDPRPKIVWNK-KGKKVSN   49 (212)
T ss_dssp             --CEEEEEEECCCC-EEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCC
T ss_pred             CCCCCCeEEeCcce-eEEecCCeEEEEEEEeeCCCCEEEEEE-CCcCCCC
Confidence            34678999998655 567788899999999999999999997 7776643

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=1.3e-08  Score=59.43  Aligned_cols=49  Identities=22%  Similarity=0.578  Sum_probs=39.5

Q ss_pred             CCccceEEEcCCCc--EEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         15 DTLGPIFIKEPPNR--IDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~--v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      ...+|.++..|...  +.+..|+.+.|.|.+.|.|.| |+|++ ||..+....
T Consensus         4 ~~~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k-~g~~~~~~~   54 (104)
T 2e6p_A            4 GSSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYK-DGQKVEESE   54 (104)
T ss_dssp             CCSSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEE-TTEECCCBT
T ss_pred             CCCCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEee-CCEECCCCC
Confidence            34678888887664  567788899999999999999 99996 788775543

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=98.73  E-value=6.9e-08  Score=61.72  Aligned_cols=46  Identities=33%  Similarity=0.633  Sum_probs=38.1

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      ...+|.|+..|.+ +.+..|+.+.|.|.+.|+|.|+|+|++ ||..+.
T Consensus         3 g~~pP~~~~~p~~-~~v~~G~~v~l~C~~~g~p~~~v~W~~-~~~~~~   48 (212)
T 2yd1_A            3 GAHPPEIIRKPQN-QGVRVGGVASFYCAARGDPPPSIVWRK-NGKKVS   48 (212)
T ss_dssp             --CCCEEEECCCC-EEEETTSCEEEEEEEECSSCCEEEEEE-TTEECC
T ss_pred             CCCCCEEEcCCCc-eEEecCCEEEEEEEEccCCCCeEEEEE-CCEECC
Confidence            3578999998655 567788899999999999999999997 787775

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=98.72  E-value=1.1e-08  Score=59.29  Aligned_cols=46  Identities=20%  Similarity=0.233  Sum_probs=36.6

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      +..+|.|... +..+.+..|+.+.|.|.|.|.| |+|+|++ ||..+..
T Consensus         6 ~~~pp~~~~~-~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k-~g~~~~~   51 (95)
T 2ckn_A            6 QAQPWGVPVE-VESLLVHPGDLLQLRCRLRDDV-QSINWLR-DGVQLVE   51 (95)
T ss_dssp             SSCSCCBTTB-BCCEEECTTSCEEEECCEESSC-CEEEEEB-TTBCCCC
T ss_pred             CCCCCEEEcC-cceEEEcCCCeEEEEEECCCCC-CceEEEE-CCEecCC
Confidence            3456777766 4556678898999999999998 8999997 8877654

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=98.72  E-value=2e-08  Score=59.51  Aligned_cols=40  Identities=13%  Similarity=0.311  Sum_probs=32.7

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCC---CeEEEEeCC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPN---PEIIWIRSD   57 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~---P~I~W~~~d   57 (74)
                      -.|.|+..| +.+.+..|+.++|.|.+.|.|.   |+|+|++++
T Consensus         3 p~p~f~~~p-~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~   45 (108)
T 3cx2_A            3 PIGLFVMRP-QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGK   45 (108)
T ss_dssp             CCCSCSBCC-CCEEEETTCCEEEEEEEECC-CCSCCEEEEEETT
T ss_pred             CccEEEeCC-CcEEEeCCCCEEEEEEECCCccCCCcEEEEccCC
Confidence            458898886 4556788989999999999999   999999843

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=98.70  E-value=4.1e-09  Score=69.61  Aligned_cols=44  Identities=20%  Similarity=0.444  Sum_probs=31.3

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      .+|.+... +....+.+|+.+.|.|.|.|.|.|+|+|+++||...
T Consensus       105 ~p~~~~~~-~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~  148 (203)
T 4fa8_A          105 KPLTLSVH-SERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEP  148 (203)
T ss_dssp             EEEEEEEE-EEECCSSCSCCEEEEEEEEEESCCEEEECCC-----
T ss_pred             CCceeeec-ceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeec
Confidence            35556555 445556788889999999999999999998777553

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=98.70  E-value=9.6e-08  Score=60.27  Aligned_cols=47  Identities=17%  Similarity=0.513  Sum_probs=39.3

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      .|.+...++....+..|+.+.|.|.+.|+|.|+|+|++ ||.++....
T Consensus       116 ~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~-~~~~~~~~~  162 (212)
T 2r15_A          116 RARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKALAQTD  162 (212)
T ss_dssp             SCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEE-TTEEECCCS
T ss_pred             CCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEE-CCeECccCC
Confidence            56677777777778889899999999999999999996 788876544

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.70  E-value=3.9e-08  Score=57.79  Aligned_cols=48  Identities=10%  Similarity=0.192  Sum_probs=38.6

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      ...+|.|+..| .++.+..|+.+.|.|.+.|.|.| |+|++ ||..+....
T Consensus         5 ~~~~p~~~~~~-~~~~v~~G~~v~l~C~~~~~~~~-v~W~k-~g~~~~~~~   52 (106)
T 2dlt_A            5 SSGQLEVLQDI-ADLTVKAAEQAVFKCEVSDEKVT-GKWYK-NGVEVRPSK   52 (106)
T ss_dssp             SCCCCCEEECC-CCEEEESSCCEECCCEESCSSCE-EEEEE-SSCBCCCCS
T ss_pred             CCCCCEEecCC-CCeEEeCCCeEEEEEEEcCCCcc-eEEEc-CCEECcCCC
Confidence            45678888885 45567888899999999999998 99997 777765544

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=98.69  E-value=2.9e-08  Score=68.09  Aligned_cols=50  Identities=26%  Similarity=0.519  Sum_probs=40.2

Q ss_pred             CccceEEEcCCCcEE--ecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCC
Q psy11558         16 TLGPIFIKEPPNRID--FSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG   66 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~--~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~   66 (74)
                      ..+|.|+.+|.+.+.  ..+|+.+.|.|.+.|+|.|+|+|++ ||..+...++
T Consensus         2 ~~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k-~g~~~~~~~~   53 (382)
T 1cs6_A            2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKM-NGTELKMGPD   53 (382)
T ss_dssp             CEEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEE-TTEECCCSTT
T ss_pred             CCCCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEE-CCEECCcCCC
Confidence            468999999876653  1577789999999999999999997 7888765443

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.68  E-value=1.5e-08  Score=59.33  Aligned_cols=46  Identities=15%  Similarity=0.326  Sum_probs=36.1

Q ss_pred             ccce-EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         17 LGPI-FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        17 ~~P~-fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      .+|. |+.. +..+.+..|+.+.|.|.+.| |.|+|+|++ ||..+....
T Consensus         5 ~~p~~~~~~-~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k-~g~~l~~~~   51 (103)
T 1x44_A            5 SSGIMVTKQ-LEDTTAYCGERVELECEVSE-DDANVKWFK-NGEEIIPGP   51 (103)
T ss_dssp             CSSCCCSBC-CCCEEEETTEEEEEEEECSS-SSCCCEEEE-TTEECCCST
T ss_pred             CCCceeecc-CCCEEEECCCCEEEEEEecC-CCCeEEEEE-CCEECCCCC
Confidence            4555 5555 55667788989999999999 889999996 788876554

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=98.68  E-value=1.1e-07  Score=59.13  Aligned_cols=48  Identities=27%  Similarity=0.391  Sum_probs=39.7

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      ...+|.|+..|. .+.+..|+.+.|.|.+.|.|.|+|+|++ ||..+...
T Consensus         4 ~~~~P~~~~~~~-~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~   51 (197)
T 3lcy_A            4 SGEAPGIRKEMK-DVTTKLGEAAQLSCQIVGRPLPDIKWYR-FGKELIQS   51 (197)
T ss_dssp             CCEEEEEEECCC-CEEEETTSEEEEEEEEEEESCCEEEEEE-TTEEECCC
T ss_pred             cCCCCcccccCC-ceEEeCCCcEEEEEEEecCCCCEEEEEE-CCEECCCC
Confidence            457899998864 5567888899999999999999999997 77776543

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=98.68  E-value=1.2e-07  Score=62.44  Aligned_cols=49  Identities=18%  Similarity=0.413  Sum_probs=40.2

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG   66 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~   66 (74)
                      ..+|.|...|. .+.+..|+.+.|.|.+.|.|.|+|+|++ ||..+.....
T Consensus         3 ~~pP~~~~~p~-~~~~~~G~~v~l~C~~~g~p~~~v~W~~-~~~~~~~~~~   51 (284)
T 2rik_A            3 MAPPFFDLKPV-SVDLALGESGTFKCHVTGTAPIKITWAK-DNREIRPGGN   51 (284)
T ss_dssp             CCCCEEEECCC-CEEEETTCCEEEEEEEESSSCCEEEEEE-TTEECCSSSS
T ss_pred             cCCCEEEcccc-ceEecCCCcEEEEEEEEcCCCCEEEEEE-CCEECcCCCc
Confidence            46899999865 5567788899999999999999999997 7877765443

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=98.67  E-value=1.4e-07  Score=59.08  Aligned_cols=46  Identities=24%  Similarity=0.590  Sum_probs=37.9

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      ..+|.|+..| ..+.+..|+.+.|.|.+.|.|.|.|+|++ ||..+..
T Consensus         2 ~~~P~~~~~~-~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~   47 (197)
T 2j8h_A            2 AMAPHFKEEL-RNLNVRYQSNATLVCKVTGHPKPIVKWYR-QGKEIIA   47 (197)
T ss_dssp             -CCCEEEECC-CCEEEETTSCEEEEEEEECSSCCEEEEEE-TTEECCC
T ss_pred             CCCCEEEEcC-CccEEcCCCEEEEEEEEeecCCCEEEEEE-CCEECcc
Confidence            3679999886 45567888899999999999999999997 7777653

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=98.66  E-value=7.9e-08  Score=61.71  Aligned_cols=49  Identities=18%  Similarity=0.398  Sum_probs=39.0

Q ss_pred             cCCCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         13 EDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        13 ~~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      .....+|.| ..| ..+.+..|+.+.|.|.|.|+|.|+|+|.+ ||..+...
T Consensus        14 ~~~~~~P~~-~~p-~~~~~~~G~~v~l~C~~~g~p~p~i~W~~-~g~~l~~~   62 (215)
T 3mtr_A           14 GSHMYAPKL-QGP-VAVYTWEGNQVNITCEVFAYPSATISWFR-DGQLLPSS   62 (215)
T ss_dssp             -CCCEEEEE-ECC-SEEEECTTCCEEEEEEEEEESCCEEEEEE-TTEESSCS
T ss_pred             cceecCCcc-cCC-ceEEEECCCCEEEEEEEeecCCCEEEEEE-CCeECCCC
Confidence            344567888 454 45778889999999999999999999997 78877654

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.66  E-value=2.8e-08  Score=57.98  Aligned_cols=40  Identities=15%  Similarity=0.339  Sum_probs=33.2

Q ss_pred             CCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCCc
Q psy11558         26 PNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGL   67 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~~   67 (74)
                      ..++....|+.+.|.|.+.| |.|.|+|++ ||.+|......
T Consensus         3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k-~g~~l~~~~~~   42 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYK-DGERLASQGRV   42 (84)
T ss_dssp             CCCEEECTTSCEEEECCCSC-CSTTCEEEE-TTEECCCCSSE
T ss_pred             CeEEEEecCCCEEEEEEECC-CCcEEEEEE-CCEEccccccE
Confidence            35677889999999999988 999999996 89988765443

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=98.66  E-value=5.8e-08  Score=60.52  Aligned_cols=47  Identities=28%  Similarity=0.514  Sum_probs=38.7

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      ..+|.|+..|. .+.+..|+.+.|.|.+.|.|.|+|+|++ ||..+...
T Consensus         3 ~~~P~~~~~~~-~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~   49 (194)
T 2a38_A            3 TQAPTFTQPLQ-SVVVLEGSTATFEAHISGFPVPEVSWFR-DGQVISTS   49 (194)
T ss_dssp             CEEEEEEECCC-CEEEETTSCEEEEEEEEEESCCEEEEEE-SSSBCCTT
T ss_pred             CCCCeEEccCC-ceEEECCCEEEEEEEEEecCCCEEEEEE-CCEEcccc
Confidence            46899998864 4567788899999999999999999997 77766544

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.65  E-value=3.1e-08  Score=57.79  Aligned_cols=47  Identities=4%  Similarity=0.180  Sum_probs=37.5

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      ..+|.|+..| .++.+..|+.+.|.|.+.|.| |+|+|++ ||..+....
T Consensus         6 ~~p~~~~~~~-~~~~v~~G~~v~l~C~~~~~~-~~v~W~k-~g~~i~~~~   52 (101)
T 2edk_A            6 SGPVLIVTPL-EDQQVFVGDRVEMAVEVSEEG-AQVMWMK-NGVELTRED   52 (101)
T ss_dssp             CCCCCEEECC-CCEEEESSCCCBCCEEESCSS-CCCEEEE-SSCBCCCSC
T ss_pred             cCCCEEEecC-CceEEcCCCCEEEEEEEeCCC-CEEEEEE-CCEECCCCC
Confidence            3467787764 556778898999999999999 9999997 787776544

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=98.65  E-value=3.8e-08  Score=57.32  Aligned_cols=45  Identities=11%  Similarity=0.251  Sum_probs=36.1

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      ..+|.|+..| ..+.+..|+.+.|.|.+.|.|.| |+|++ ||..+..
T Consensus         6 ~~pp~~~~~~-~~~~v~~G~~v~l~C~~~~~p~~-v~W~k-~~~~l~~   50 (103)
T 2e7b_A            6 SGPVRFQEAL-KDLEVLEGGAATLRCVLSSVAAP-VKWCY-GNNVLRP   50 (103)
T ss_dssp             CCCCCCTBCC-CCEEEESSSCEEEEEECSSCCCS-CEEEE-SSSBCCC
T ss_pred             CCCCEEEecC-ccEEEECCCcEEEEEEEeCCCCC-eEEEE-CCEECCC
Confidence            4567887764 55667889899999999999999 99997 6766643

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.65  E-value=1.9e-08  Score=58.20  Aligned_cols=49  Identities=18%  Similarity=0.411  Sum_probs=39.1

Q ss_pred             CCCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         14 DDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        14 ~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      ....+|.|...|... .+..|+.+.|.|.|.|+|.|+|+|++ ||..+...
T Consensus         6 ~~~~~~~i~~~p~~~-~v~~G~~v~l~C~~~g~p~~~v~W~k-~~~~~~~~   54 (96)
T 2ens_A            6 SGLEEVQLVVEPEGG-AVAPGGTVTLTCEVPAQPSPQIHWMK-DGVPLPLP   54 (96)
T ss_dssp             CCCCSCCCEEESTTS-EECTTCEEEEECCCSSCSSCCCCCEE-SSSBCSSC
T ss_pred             CCCCCCEEEECCCCC-EEcCCCeEEEEEEEccCCCCEEEEEE-CCEECcCC
Confidence            345678888886555 46788889999999999999999997 77776543

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.65  E-value=4.5e-08  Score=58.09  Aligned_cols=48  Identities=15%  Similarity=0.210  Sum_probs=38.1

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCC
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG   66 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~   66 (74)
                      ...+|.|+.. +.++.+.+|+.+.|.|.+  .|.|+|+|++ ||.++.....
T Consensus         4 ~~~p~~~~~~-~~~~~v~~G~~v~l~C~v--~p~p~v~W~k-~g~~l~~~~r   51 (100)
T 2yuz_A            4 GSSGLKILTP-LTDQTVNLGKEICLKCEI--SENIPGKWTK-NGLPVQESDR   51 (100)
T ss_dssp             SSCCCCCSBC-CCCEEEETTSCCCEEEEC--SSCCCEEEEE-TTEECCCCSS
T ss_pred             CCCCCEEecc-CCceEEcCCCCEEEEEEe--CCCCeEEEEE-CCEECCCCCc
Confidence            3456788777 456677889999999999  8999999996 8888865443

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=98.64  E-value=8.3e-08  Score=70.44  Aligned_cols=50  Identities=20%  Similarity=0.483  Sum_probs=41.1

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCC
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG   66 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~   66 (74)
                      +..+|.|+.. .+.+.+..|+.++|.|.+.|+|.|+|+|++ ||..+...+.
T Consensus         2 v~~pP~f~~~-~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k-~g~~l~~~~~   51 (570)
T 3b43_A            2 AMEPPYFIEP-LEHVEAAIGEPITLQCKVDGTPEIRIAWYK-EHTKLRSAPA   51 (570)
T ss_dssp             CCCCCEEEEC-CCCEEECTTSCEEEEEEEESSSSCEEEEEC-SSSBCCCCSS
T ss_pred             CCCCCcceEE-CCceEEcCCCEEEEEEEEccCCCCEEEEEE-CCEEccCCCC
Confidence            4578999865 667778899999999999999999999996 7777765443

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=98.64  E-value=1.7e-07  Score=62.24  Aligned_cols=46  Identities=24%  Similarity=0.581  Sum_probs=38.6

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      ..+|.|+..|. .+.+..|+.+.|.|.|.|+|.|+|+|++ ||..+..
T Consensus         2 ~~~P~~~~~p~-~~~v~~G~~v~l~C~~~g~p~~~v~W~~-~~~~~~~   47 (305)
T 2nzi_A            2 AMAPHFKEELR-NLNVRYQSNATLVCKVTGHPKPIVKWYR-QGKEIIA   47 (305)
T ss_dssp             CCCCEEEECCC-CEEECTTCCEEEEEEEECSSCCEEEEEE-TTEECCC
T ss_pred             CCCCeeeeccc-ceEEeCCCcEEEEEEEeCCCCCeEEEEE-CCEEccc
Confidence            35899999965 5668889999999999999999999997 6776643

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=98.62  E-value=1.7e-07  Score=53.78  Aligned_cols=46  Identities=20%  Similarity=0.342  Sum_probs=36.4

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeCCCeeecC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRSDGTAVGD   63 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~dG~~i~~   63 (74)
                      ..+|.|+..|... .+..|+.++|.|.|.|.|  .|+|+|.+ ||..+..
T Consensus         8 ~~~P~i~~~p~~~-~v~~G~~v~L~C~~~~~~~~~~~i~W~k-~~~~~~~   55 (112)
T 3so5_A            8 FPXPQITVQPETQ-SAIXGSDVSFTCSAASSSDSPMTFAWXX-DNEALQD   55 (112)
T ss_dssp             CCSCEEEECCCCE-EECTTCCEEEEEEEEESCCCCCEEEEEE-TTEECTT
T ss_pred             CCCCeEEeCCCCc-EEECCCCEEEEEEEecCCCCCEEEEEcc-CCccccc
Confidence            5688999886544 677888999999999664  68999997 7776654

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=98.62  E-value=8.4e-08  Score=62.91  Aligned_cols=43  Identities=16%  Similarity=0.478  Sum_probs=36.3

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEccc-CCCeEEEEeCCCeeecC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGS-PNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~P~I~W~~~dG~~i~~   63 (74)
                      +|.|+..+ + ..+.+|..++|.|.|.|. |.|+|+|++ ||.++..
T Consensus       117 ~P~~~~~~-~-~~v~~g~~v~l~C~v~g~~P~p~i~W~k-~g~~l~~  160 (207)
T 3rbs_A          117 GPHFVEYL-S-WEVTGECNVLLKCKVANIKKETHIVWYK-DEREISV  160 (207)
T ss_dssp             SSEEEEEE-E-EEEETTTEEEEEEEEESCCTTCEEEEEE-TTEEECC
T ss_pred             CCceEecC-C-cEEcCCCcEEEEEEEeCCCCCCEEEEEE-CCEECCC
Confidence            78888775 3 556788889999999999 999999996 8888854

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=98.62  E-value=1.1e-07  Score=60.56  Aligned_cols=48  Identities=27%  Similarity=0.634  Sum_probs=39.7

Q ss_pred             CCCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         14 DDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        14 ~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      ....+|.|+..|. .+.+..|+.+.|.|.+.|+|.|+|+|++ ||..+..
T Consensus         5 ~~~~~P~i~~~p~-~~~v~~G~~v~L~C~~~g~p~~~v~W~~-~g~~~~~   52 (217)
T 2vr9_A            5 GQYQSPRIIEHPT-DLVVKKNEPATLNCKVEGKPEPTIEWFK-DGEPVST   52 (217)
T ss_dssp             -CCCCCEEEECCC-CEEECTTSCEEECCEEECSSCCEEEEEE-TTEECCC
T ss_pred             cccCCCEEecCCC-ceEEeCCCcEEEEEEcCCCCCCeEEEEE-CCcCccC
Confidence            3467899999864 5567889999999999999999999997 7777654

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=98.61  E-value=7.4e-08  Score=60.56  Aligned_cols=46  Identities=22%  Similarity=0.458  Sum_probs=38.1

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEc-ccCCCeEEEEeCCCeeecCC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTAR-GSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~-G~P~P~I~W~~~dG~~i~~~   64 (74)
                      ++|.|+..| +.+.+..|+.+.|.|.+. |.|.|+|+|++ ||..+...
T Consensus         1 e~~~~~~~p-~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~-~g~~l~~~   47 (195)
T 2c5d_C            1 EESPFVGNP-GNITGARGLTGTLRCQLQVQGEPPEVHWLR-DGQILELA   47 (195)
T ss_dssp             -CCSEEECC-CCEEECTTCCEEEEEEEEEESSCCCCEEEE-TTEECCSC
T ss_pred             CCCeeccCh-hheEEecCCcEEEecccccCCCCcEEEEEE-CCEEcccC
Confidence            368899985 555678898999999999 99999999997 78877554

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=98.61  E-value=6.4e-08  Score=64.78  Aligned_cols=46  Identities=33%  Similarity=0.555  Sum_probs=33.3

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      ...+|.|+..|.+ +.+..|+.+.|.|.+.|+|.|+|+|++ ||..+.
T Consensus         3 ~~~~P~~~~~p~~-~~v~~G~~v~l~C~~~g~p~~~i~W~k-~g~~i~   48 (304)
T 2yd9_A            3 GEEPPRFIKEPKD-QIGVSGGVASFVCQATGDPKPRVTWNK-KGKKVN   48 (304)
T ss_dssp             -CCCCEEEECCCC-EEEETTSCEEEEEEEECSSCCEEEEC--------
T ss_pred             CccCCeeeecCCc-eEecCCCeEEEEEEEEEeCCCeEEEEE-CCEECC
Confidence            4578999998654 456788899999999999999999986 676653

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=5.7e-08  Score=56.52  Aligned_cols=47  Identities=13%  Similarity=0.247  Sum_probs=37.0

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      ..+|.|+..| ..+.+..|+.+.|.|.+.| |.|+|+|++ ||..+....
T Consensus         6 ~~pp~~~~~~-~~~~v~~G~~v~l~C~~~~-~~~~v~W~k-~g~~~~~~~   52 (103)
T 2edf_A            6 SGPAAIIKPL-EDQWVAPGEDVELRCELSR-AGTPVHWLK-DRKAIRKSQ   52 (103)
T ss_dssp             CCCCCEEECC-CCEEECTTSCEEECCEESS-SSCCCCEEE-SSCBCCCSS
T ss_pred             CCCcEEEecC-CccEEcCCCCEEEEEEEeC-CCCcEEEEE-CCEEccCCC
Confidence            4567777775 4567888999999999999 999999997 777765443

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=98.60  E-value=8.7e-08  Score=55.38  Aligned_cols=48  Identities=17%  Similarity=0.331  Sum_probs=37.5

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG   66 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~   66 (74)
                      ...|.|++.| ..+.+..|+.+.|.|.+ |.|.|.|+|++ ||..+.....
T Consensus         6 ~~~~~~~~~~-~~~~v~~G~~v~l~C~~-~~p~~~v~W~k-~~~~l~~~~~   53 (95)
T 2k1m_A            6 KPVSAFSKKP-RSVEVAAGSPAVFEAET-ERAGVKVRWQR-GGSDISASNK   53 (95)
T ss_dssp             CCCCCCSBCC-CCEEEETTSCEEEEEEC-SSSSCCCEEEC-SSSEECSSTT
T ss_pred             CCCCeeEeCC-CcEEEeCCCcEEEEEEe-CCCCCeEEEEE-CCEECCCCCc
Confidence            3457777775 55567888899999999 89999999996 7877765443

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=98.59  E-value=9.8e-08  Score=56.51  Aligned_cols=31  Identities=19%  Similarity=0.529  Sum_probs=26.6

Q ss_pred             CCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         34 TTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      +..+.|.|.|.|+|.|+|+|++ ||.++....
T Consensus        16 ~~~~~~~c~v~G~P~P~i~W~k-~g~~l~~~~   46 (103)
T 1wwb_X           16 DHHWCIPFTVKGNPKPALQWFY-NGAILNESK   46 (103)
T ss_dssp             CCEEEEEEEEECSSCCEEEEEE-TTEEECCCS
T ss_pred             CcEEEEEEEEEEeCCCEEEEEE-CCEECCCCC
Confidence            4568999999999999999996 888887654

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=98.59  E-value=1.5e-07  Score=62.58  Aligned_cols=47  Identities=17%  Similarity=0.473  Sum_probs=39.6

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      ..|.++..+++.+.+..|+.+.|.|.|.|+|.|+|+|++ ||..+...
T Consensus       220 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~-~g~~~~~~  266 (317)
T 2y25_A          220 NRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKALASD  266 (317)
T ss_dssp             TSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEE-SSSEECCC
T ss_pred             CCCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEE-CCEeCCCC
Confidence            467788887887788899999999999999999999997 67776543

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=98.56  E-value=3.1e-08  Score=59.50  Aligned_cols=45  Identities=20%  Similarity=0.404  Sum_probs=36.0

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCe-EEEEeCCCeeecC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPE-IIWIRSDGTAVGD   63 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~-I~W~~~dG~~i~~   63 (74)
                      ..+|.|.. | ..+....|..+.|.|.|.|+|.|. |+|.+ ||..+..
T Consensus        12 ~~~P~i~~-~-~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~-~~~~l~~   57 (122)
T 2cry_A           12 NGPPIISS-T-QTQHALHGEKGQIKCFIRSTPPPDRIAWSW-KENVLES   57 (122)
T ss_dssp             CSSCCEEE-E-CCCCCCTTSCCCCCEEECCSSCCSEEEEES-SSCEECS
T ss_pred             ecCCCccC-C-CeEEEecCCCEEEEEEEeecCCCcEeEEEE-CCEEccC
Confidence            46788888 4 444567888999999999999998 99996 6766654

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=98.56  E-value=1.3e-07  Score=58.87  Aligned_cols=47  Identities=21%  Similarity=0.357  Sum_probs=38.4

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      ...+|.|+.. +..+.+..|+.+.|.|.+.|.|.|+|+|++ ||..+..
T Consensus         4 ~~~~P~i~~~-~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~-~~~~~~~   50 (192)
T 2iep_A            4 LPKAPVITTP-LETVDALVEEVATFMCAVESYPQPEISWTR-NKILIKL   50 (192)
T ss_dssp             CCEEEEESSC-CCEEEEETTSCEEEECCEEEESCCEEEEEE-TTEECCT
T ss_pred             cCCCceeecC-ccceeeeCCCcEEEEeeCCCCCCCeEEEEE-CCEEccc
Confidence            4567887766 566677889899999999999999999997 7777653

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=98.55  E-value=1.4e-07  Score=59.32  Aligned_cols=47  Identities=28%  Similarity=0.632  Sum_probs=38.6

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      ...+|.|+..| ..+.+..|+.+.|.|.+.|+|.|+|+|++ ||..+..
T Consensus         6 ~~~pp~i~~~p-~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~   52 (212)
T 2v9r_A            6 EDFPPRIVEHP-SDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVET   52 (212)
T ss_dssp             CCEEEEEEECC-CCEEECTTCCEEECCEEEEESCCEEEEEE-TTEECCC
T ss_pred             ccCCcceecCC-CceEEeCCCcEEEEEEcCCCCCCEEEEEE-CCEEeec
Confidence            35688999885 45567889899999999999999999997 6776643

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=98.55  E-value=1.6e-07  Score=54.09  Aligned_cols=41  Identities=20%  Similarity=0.315  Sum_probs=33.7

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEc-ccCCCeEEEEeCC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTAR-GSPNPEIIWIRSD   57 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~-G~P~P~I~W~~~d   57 (74)
                      .+|.+..+++..+.+..|+.+.|.|.+. |.|.|+|+|++++
T Consensus         8 ~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~   49 (98)
T 1gl4_B            8 KPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLH   49 (98)
T ss_dssp             -CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGG
T ss_pred             CCcEEEEeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCC
Confidence            4556667767777788999999999999 7999999999853

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=98.55  E-value=5.6e-08  Score=66.62  Aligned_cols=47  Identities=23%  Similarity=0.454  Sum_probs=40.3

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      ...+|.|...++..+.+.+|+.+.|.|.+.|+|.|+|+|++ ||..+.
T Consensus        13 ~~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k-~g~~l~   59 (404)
T 3p3y_A           13 LTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR-NSRFFN   59 (404)
T ss_dssp             CCCCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEE-TTEECC
T ss_pred             ccCCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEE-CCEEee
Confidence            35789999887777778889999999999999999999997 777654

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=98.54  E-value=1.7e-07  Score=59.45  Aligned_cols=33  Identities=15%  Similarity=0.447  Sum_probs=27.9

Q ss_pred             CCCeEEEEEEcccCCCeEEEEeCCCeeecCCCCc
Q psy11558         34 TTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGL   67 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~~   67 (74)
                      +..+.|.|.|.|+|+|+|+|++ ||.+|...+..
T Consensus        15 ~~~~~l~c~v~G~P~P~I~W~k-nG~~l~~~~~~   47 (126)
T 1he7_A           15 MHHWCIPFSVDGQPAPSLRWLF-NGSVLNETSFI   47 (126)
T ss_dssp             CCEEEEEEEECCSSCCEEEEEE-TTEECCCCSSE
T ss_pred             CccEEEEEEEeeeCCCeEEEEE-CCEECCCCCce
Confidence            4469999999999999999996 89998776543

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.54  E-value=5.6e-08  Score=61.78  Aligned_cols=52  Identities=15%  Similarity=0.463  Sum_probs=39.1

Q ss_pred             cccCCCccceEEEcCC---CcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         11 AAEDDTLGPIFIKEPP---NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        11 ~~~~~~~~P~fv~~Pp---~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      .......+|.|+..|.   ....+..|+.+.|.|.+.|.|.|+|+|++ ||..+..
T Consensus         8 ~~~~~~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~-~~~~~~~   62 (231)
T 3ojm_B            8 ENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQ   62 (231)
T ss_dssp             -----CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEE-TTEECCG
T ss_pred             cccCCccCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEE-CCccccc
Confidence            3445567899987752   55667789999999999999999999997 7777654

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=98.53  E-value=1.3e-07  Score=58.75  Aligned_cols=45  Identities=24%  Similarity=0.674  Sum_probs=33.3

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      +|.|+..| ..+.+..|+.+.|.|.+.|.|.|+|+|++ ||..+...
T Consensus         2 ~~~~~~~p-~~~~v~~G~~v~l~C~~~~~p~~~v~W~k-~~~~~~~~   46 (182)
T 1rhf_A            2 GLKLMGAP-VKLTVSQGQPVKLNCSVEGMEEPDIQWVK-DGAVVQNL   46 (182)
T ss_dssp             -----CCC-EEEEEETTCCEEEEEEEESCSSCCEEEEE-TTEECCSS
T ss_pred             CCEEEeCC-cceEEeCCCcEEEEEEEeCCCCCeEEEEE-CCeecCCC
Confidence            57788775 55667888899999999999999999997 78776543

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=98.53  E-value=1.8e-07  Score=65.22  Aligned_cols=46  Identities=22%  Similarity=0.466  Sum_probs=37.7

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      .+|.|+..+. ......|..+.|.|.|.|+|.|+|+|++ ||.++...
T Consensus       294 ~~P~~~~~~~-~~~v~~g~~v~l~C~~~g~P~p~i~W~k-~g~~l~~~  339 (384)
T 3kld_A          294 AQPNWVQIIN-DIHVAMEESVFWECKANGRPKPTYRWLK-NGDPLLTR  339 (384)
T ss_dssp             EEEEEEECCC-CEEECTTCCEEEECEEEEESCCEEEEEE-TTEECCCB
T ss_pred             cCCccccCCC-ceEecCCCCEEEEeECCccCCCeEEEEE-CCEECCCC
Confidence            4788888754 4567788899999999999999999996 78877543

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=98.52  E-value=3.6e-07  Score=57.30  Aligned_cols=45  Identities=20%  Similarity=0.393  Sum_probs=36.3

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC-CCeeec
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS-DGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~-dG~~i~   62 (74)
                      .+|.+...|. ......|..+.|.|.|.|+|.|+|+|.++ ||.++.
T Consensus        91 ~~p~~~~~~~-~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~  136 (190)
T 2wv3_A           91 AAPDITGHKR-SENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEE  136 (190)
T ss_dssp             CCCEEEEECS-EEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEE
T ss_pred             cCCcccccCC-cceeeCCCcEEEEEEeCccCCCceEEEEcCCCceee
Confidence            4677877754 44567888899999999999999999986 677764

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=98.52  E-value=1.3e-07  Score=54.54  Aligned_cols=42  Identities=10%  Similarity=0.127  Sum_probs=32.1

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG   58 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG   58 (74)
                      ..+|.|+..|. .+.+..|+.++|.|.+.|.|.|.|+|.+.++
T Consensus         4 ~~~p~~~~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~   45 (108)
T 3m45_A            4 KGSQGQFPLTQ-NVTVVEGGTAILTCRVDQNDNTSLQWSNPAQ   45 (108)
T ss_dssp             ----CCCEECC-CEEEETTSCEEEEEEESSCSSCCEEEECTTC
T ss_pred             ccCCCccccCC-eeEEEeCCcEEEEeEEcCCCccEEEEEcCCC
Confidence            45678888855 5567788899999999999999999997554

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=98.52  E-value=2.6e-07  Score=57.15  Aligned_cols=46  Identities=22%  Similarity=0.460  Sum_probs=33.9

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      .|.|+..|... .+..|+.+.|.|.+.|.|.|.|+|++ ||..+....
T Consensus         2 ~~~~~~~~~~~-~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~   47 (189)
T 2v5t_A            2 MLTFREVVSPQ-EFKQGEDAEVVCRVSSSPAPAVSWLY-HNEEVTTIS   47 (189)
T ss_dssp             CCEEEECCSSE-EEETTSCEEECCEEECSSCCEEEEEC------CBCC
T ss_pred             CceeeccCCCE-EEeCCCcEEEEEEEcCCCCCEEEEEE-CCccceecc
Confidence            58899886554 57788899999999999999999996 566555433

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=7.2e-08  Score=57.32  Aligned_cols=47  Identities=15%  Similarity=0.283  Sum_probs=36.2

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCC-CeEEEEeCCCeeecCCCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPN-PEIIWIRSDGTAVGDVPG   66 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~-P~I~W~~~dG~~i~~~~~   66 (74)
                      +|.|+.. ++++.+.+|+.+.|.|.+.|.|. |+|+|++ ||.++.....
T Consensus         8 p~~~~~~-~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k-~g~~i~~~~r   55 (104)
T 2eny_A            8 HVGITKR-LKTMEVLEGESCSFECVLSHESASDPAMWTV-GGKTVGSSSR   55 (104)
T ss_dssp             CCCCSBC-CCCEEEESSCCEEEEEECSSCCCSSCBCCBS-SSSBCSBCSS
T ss_pred             CCEEEec-CCCcEEcCCCcEEEEEEEcCCCCCceeEEEE-CCEECCCCCC
Confidence            4456665 56667888999999999999985 4899985 8888765443

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=1.1e-07  Score=55.29  Aligned_cols=47  Identities=13%  Similarity=0.273  Sum_probs=36.9

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      ...+|.|+..| ..+.+..|+.+.|.|. .|.|.|+|+|++ ||..+...
T Consensus         5 ~~~pp~~~~~~-~~~~v~~G~~v~l~C~-~~~p~~~v~W~k-~~~~l~~~   51 (103)
T 2dku_A            5 SSGANCFTEEL-TNLQVEEKGTAVFTCK-TEHPAATVTWRK-GLLELRAS   51 (103)
T ss_dssp             SCCCCCCSSCC-CCEEEETTSEEEEEEE-CSSCCSCCEEEE-SSCBCCSS
T ss_pred             CCCCCEeEecC-CcEEEeCCCcEEEEEE-eCCCCCeEEEEe-CCEECCCC
Confidence            34577887775 5566788989999999 599999999997 67766543

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=98.50  E-value=5.4e-07  Score=55.83  Aligned_cols=45  Identities=33%  Similarity=0.684  Sum_probs=36.3

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCC-eEEEEeCCCeeecC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSDGTAVGD   63 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P-~I~W~~~dG~~i~~   63 (74)
                      .+|.+...|.. ..+..|+.+.|.|.|.|+|.| +|+|.+ ||..+..
T Consensus        97 ~~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~p~~v~W~~-~~~~~~~  142 (182)
T 1rhf_A           97 GVPFFTVEPKD-LAVPPNAPFQLSCEAVGPPEPVTIVWWR-GTTKIGG  142 (182)
T ss_dssp             CSCEEEECCCC-EEECTTCCEEEEEEEECSSSCCEEEEEE-TTEECSC
T ss_pred             cCCeEEecCcc-eEecCCCEEEEEeEecCCCCCCEEEEEc-CCeECCC
Confidence            46778877544 567788899999999999999 999997 7776643

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=98.50  E-value=2.8e-07  Score=57.41  Aligned_cols=45  Identities=27%  Similarity=0.437  Sum_probs=36.1

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      .+|.+...| ....+..|+.+.|.|.|.|+|.|+|+|.+ ||..+..
T Consensus        99 ~~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~~v~W~~-~~~~~~~  143 (191)
T 1epf_A           99 QKLMFKNAP-TPQEFKEGEDAVIVCDVVSSLPPTIIWKH-KGRDVIL  143 (191)
T ss_dssp             CCSEEEECC-SSEECCTTSCEEECCEEECSSCCEEEEEE-TTEEGGG
T ss_pred             cCceEecCC-CcEeecCCCeEEEEEEECCCCCCEEEEEE-CCEEeec
Confidence            467777775 44457788899999999999999999997 7777653

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=98.50  E-value=5.3e-07  Score=57.70  Aligned_cols=46  Identities=30%  Similarity=0.435  Sum_probs=35.2

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      ..|.+...|.. ..+..|+.+.|.|.|.|+|.|+|+|++ ||.++...
T Consensus       107 ~~p~~~~~~~~-~~~~~g~~v~l~C~~~g~p~p~v~W~~-~g~~l~~~  152 (212)
T 2yd6_A          107 GFPTIDMGPQL-KVVERTRTATMLCAASGNPDPEITWFK-DFLPVDTS  152 (212)
T ss_dssp             TCCEEEECCCC-EEEETTSCEEEEEEEECSSCCEEEEEE-TTEEC---
T ss_pred             CcceeecCCcc-eeEecCCCEEEEEEecCCCCCeEEEEE-CCccccCc
Confidence            34788887544 456778889999999999999999997 78777654

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=98.48  E-value=8.4e-07  Score=55.64  Aligned_cols=47  Identities=26%  Similarity=0.677  Sum_probs=37.2

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCC-eEEEEeCCCeeecCC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSDGTAVGDV   64 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P-~I~W~~~dG~~i~~~   64 (74)
                      ..+|.|...|.. ..+..|+.+.|.|.|.|.|.| +|+|.+ ||.++...
T Consensus       104 ~~~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~p~~v~W~~-~~~~~~~~  151 (195)
T 2c5d_C          104 EGLPYFLEEPED-RTVAANTPFNLSCQAQGPPEPVDLLWLQ-DAVPLATA  151 (195)
T ss_dssp             CCSCEEEECCCC-EEECTTCCEEEEEEEECSSCCCEEEEEE-SSCBSSSS
T ss_pred             ecCCeEEcCCCc-EEEcCCCEEEEEeECCCCCCCCEEEEEE-CCEeccCC
Confidence            346888887544 567788889999999999999 999997 67666543

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=98.48  E-value=8.4e-07  Score=55.16  Aligned_cols=47  Identities=17%  Similarity=0.405  Sum_probs=37.7

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      .+|.+...+. ......|..+.|.|.+.|.|.|+++|.+ ||..+....
T Consensus       102 ~~p~~~~~~~-~~~~~~g~~~~l~C~~~g~p~~~v~W~~-~~~~~~~~~  148 (194)
T 2a38_A          102 APPNFVQRLQ-SMTVRQGSQVRLQVRVTGIPTPVVKFYR-DGAEIQSSL  148 (194)
T ss_dssp             EEEEEEECCC-CEEECTTEEEEEEEEEEEESCCEEEEEE-TTEECCCSS
T ss_pred             CCCEEEeCCc-cEEEcCCCEEEEEEEEEEecCCeEEEEE-CCEECCCCC
Confidence            5677777754 4557788889999999999999999997 788776543

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=98.47  E-value=1.8e-07  Score=55.78  Aligned_cols=44  Identities=18%  Similarity=0.467  Sum_probs=31.9

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      .+|.++..+...+    ..+..|.|.|.|+|.|+|+|++ ||..+....
T Consensus         7 ~pP~i~~~~~~~~----~~~~~l~C~~~g~P~p~i~W~k-~g~~l~~~~   50 (118)
T 1wwc_A            7 YPPRVVSLEEPEL----RLEHCIEFVVRGNPPPTLHWLH-NGQPLRESK   50 (118)
T ss_dssp             CCCCCCCCCCCCC----CCEEEEEEEEECSSCCEEEEEE-TTEECCCSS
T ss_pred             cCCceeccCCCee----ccceEEEEEeeeeCCCeEEEEE-CCEECCCCC
Confidence            4566655533332    2457999999999999999996 788876544

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.46  E-value=2.3e-07  Score=63.52  Aligned_cols=46  Identities=17%  Similarity=0.544  Sum_probs=38.7

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      .+|.|...|...+.+..|+.+.|.|.|.|+|.|+|+|++ ||.++..
T Consensus       307 ~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~-~g~~~~~  352 (395)
T 1bih_A          307 SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH-NAKPLSG  352 (395)
T ss_dssp             EEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEE-TTEECCS
T ss_pred             cCCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEE-CCEECCC
Confidence            478888887664677889899999999999999999997 7877653

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=98.46  E-value=1e-06  Score=57.93  Aligned_cols=50  Identities=24%  Similarity=0.450  Sum_probs=40.5

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG   66 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~   66 (74)
                      ..+|.|+..++....+..|+.+.|.|.+.|+|.|+|+|++ ||..+.....
T Consensus        96 ~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~-~~~~~~~~~~  145 (284)
T 2rik_A           96 QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK-DETEIQESSK  145 (284)
T ss_dssp             ECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEE-TTEECCCSSS
T ss_pred             cCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEE-CCEECcCCCc
Confidence            3467888877776667788899999999999999999997 7777765443

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=98.46  E-value=4e-07  Score=54.16  Aligned_cols=40  Identities=20%  Similarity=0.317  Sum_probs=31.4

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcc--cCCCeEEEEeCCC
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARG--SPNPEIIWIRSDG   58 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G--~P~P~I~W~~~dG   58 (74)
                      ..+...|++.+.+..|+.+.|.|.|.|  .|.|+|+|.++++
T Consensus         8 ~~v~i~p~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~   49 (122)
T 3s35_X            8 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSS   49 (122)
T ss_dssp             EEEEEESCSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCT
T ss_pred             EEEEEcCCCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCc
Confidence            345567778777788989999999999  5567999997544

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=98.45  E-value=4.1e-07  Score=59.01  Aligned_cols=38  Identities=16%  Similarity=0.301  Sum_probs=31.5

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG   58 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG   58 (74)
                      +..+|++.+...+|+.++|.|.|.|.|.|.|+|.+.++
T Consensus         3 v~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~   40 (202)
T 1vca_A            3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQID   40 (202)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTC
T ss_pred             EEECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCC
Confidence            55677777666688899999999999999999997543

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=98.45  E-value=2.9e-07  Score=61.92  Aligned_cols=44  Identities=18%  Similarity=0.290  Sum_probs=35.0

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCC-eEEEEeCCCeee
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSDGTAV   61 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P-~I~W~~~dG~~i   61 (74)
                      .+|.+...+.......+|+.++|.|.|.|+|.| .|+|++ ||.++
T Consensus       215 ~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~-~~~~l  259 (313)
T 4fqp_A          215 YPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWST-TMGPL  259 (313)
T ss_dssp             EEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEE-TTBSC
T ss_pred             cCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEE-CCEEC
Confidence            467777666666667778889999999999999 699997 55554

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.45  E-value=8.8e-07  Score=55.06  Aligned_cols=45  Identities=18%  Similarity=0.258  Sum_probs=36.2

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      ..+|.+...++ ......|+.+.|.|.|.|+|.|+|+|.+ ||..+.
T Consensus       111 ~~~p~~~~~~~-~~~~~~g~~~~l~C~~~g~p~p~v~W~~-~~~~~~  155 (201)
T 3s97_C          111 PYPADIVVQFK-DVYALMGQNVTLECFALGNPVPDIRWRK-VLEPMP  155 (201)
T ss_dssp             CEEEEEEEECC-CEEEETTCCEEEEEEEEEESCCEEEEEE-TTBCCC
T ss_pred             CCCCceEecCC-ceEEecCCcEEEEEEccCCCCCceEEEe-CCCcCC
Confidence            35677888766 5567788889999999999999999997 565554

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.45  E-value=1.3e-07  Score=60.95  Aligned_cols=48  Identities=23%  Similarity=0.585  Sum_probs=36.9

Q ss_pred             CCccceEEEcC---CCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         15 DTLGPIFIKEP---PNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        15 ~~~~P~fv~~P---p~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      +..+|.|+..+   +..+.+.+|+.+.|.|.+.|+|.|+|+|++ ||..+..
T Consensus         8 ~~~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~-~~~~~~~   58 (241)
T 3grw_A            8 DTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREFRG   58 (241)
T ss_dssp             ---CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEE-TTEECCG
T ss_pred             cCCCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEE-CCcccCC
Confidence            35678887543   456778889999999999999999999997 7777654

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=98.45  E-value=7.9e-07  Score=57.35  Aligned_cols=50  Identities=14%  Similarity=0.192  Sum_probs=36.6

Q ss_pred             cCCCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         13 EDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        13 ~~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      ......+.|+..|. .+.+..|+.+.|.|.+.|+|.|+|+|++ +|..+...
T Consensus        13 ~~~~~~~~i~~~p~-~~~v~~G~~v~L~C~~~~~p~~~v~W~~-~~~~~~~~   62 (218)
T 3k0w_A           13 GLVPRGSKITVNPE-SKAVLAGQFVKLCCRATGHPFVQYQWFK-MNKEIPNG   62 (218)
T ss_dssp             ------CCEEECCC-CEEEETTSBEEEECEETTTTSSEEEEEE-TTEECTTC
T ss_pred             CccCCCCEEEECCC-CeEEeCCCcEEEEeeecCCCCCEEEEEE-CCEECCCC
Confidence            34567788999865 4567788899999999999999999997 67766543

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.45  E-value=1.1e-07  Score=55.38  Aligned_cols=37  Identities=22%  Similarity=0.408  Sum_probs=29.6

Q ss_pred             CCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         25 PPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        25 Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      +|..+.+..|..+.|.|.|.|.| |+|+|++ ||.++..
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k-~g~~~~~   45 (99)
T 2cr3_A            9 EVESFLVHPGDLLQLRCRLRDDV-QSINWLR-DGVQLAE   45 (99)
T ss_dssp             CEEECCBCTTSCEEEECCCCSSC-CEEEEEE-SSSBCCC
T ss_pred             CCcCeEEeCCCcEEEEEEecCCC-CeEEEEE-CCEECCC
Confidence            35555677888999999999988 8999997 6766643

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=98.42  E-value=4e-07  Score=60.86  Aligned_cols=45  Identities=22%  Similarity=0.486  Sum_probs=37.0

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      .+|.|...|.. ..+..|+.+.|.|.|.|+|.|+|+|++ ||..+..
T Consensus       204 ~~P~~~~~~~~-~~v~~G~~v~l~C~~~g~p~p~v~W~~-~~~~l~~  248 (304)
T 2yd9_A          204 VAPRFSILPMS-HEIMPGGNVNITCVAVGSPMPYVKWMQ-GAEDLTP  248 (304)
T ss_dssp             EEEEEEECCCC-BCCCTTCCEEEEEEEEEESCCEEEEEE-TTEECSC
T ss_pred             cCCcEEecCCc-eEEcCCCeEEEEEEEeeeCCCEEEEEE-CCEECCC
Confidence            57888887654 456788889999999999999999997 7877754

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.42  E-value=1.1e-07  Score=59.59  Aligned_cols=43  Identities=21%  Similarity=0.509  Sum_probs=35.6

Q ss_pred             ccCCCccceEEEcCCCcEEecCCCCeEEEEEEccc---CCCeEEEEe
Q psy11558         12 AEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGS---PNPEIIWIR   55 (74)
Q Consensus        12 ~~~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~---P~P~I~W~~   55 (74)
                      .+.....+.|+..| +++.+.+|++++|+|.+.|.   |.|+|+|++
T Consensus         6 ~~~~~~~~~f~~~P-~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~K   51 (118)
T 2edn_A            6 SGAEEPTGVFLKKP-DSVSVETGKDAVVVAKVNGKELPDKPTIKWFK   51 (118)
T ss_dssp             CCCCCCSSSCSBCC-CCCEEETTSCEECCEEEETTTSSSCCCCEEEE
T ss_pred             CCccCCcceEEECC-CCeEEeCCCCEEEEEEEeccCCCCCCcEEEee
Confidence            44455677899996 56678899999999999986   899999998

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=98.41  E-value=2.3e-07  Score=56.15  Aligned_cols=40  Identities=13%  Similarity=0.385  Sum_probs=33.1

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      +..++..+.+..|++++|.|.+.|.|.|.|+|++.++..+
T Consensus         4 ~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~   43 (124)
T 3rbg_A            4 LTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTI   43 (124)
T ss_dssp             CCCSEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEE
T ss_pred             ccCCCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEE
Confidence            3445677778899999999999999999999997666544

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=4e-07  Score=56.29  Aligned_cols=44  Identities=7%  Similarity=0.085  Sum_probs=35.8

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      +|.|+.. ++++.+.+|+.++|.|.++|  .|+++|++ ||.+|....
T Consensus         8 ~~~~~~~-l~d~~v~eG~~a~f~C~vs~--~p~v~W~k-nG~~l~~~~   51 (112)
T 2e6q_A            8 TARLVAG-LEDVQVYDGEDAVFSLDLST--IIQGTWFL-NGEELKSNE   51 (112)
T ss_dssp             CCCEEEC-CCCEEEETTCEEEEEEEESS--CCCCEEEE-SSCBCCSSC
T ss_pred             CcEEecC-CCCeEEcCCCcEEEEEEECC--CCeEEEEE-CCEECccCc
Confidence            4567777 45667888999999999999  88999996 898887654

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=98.39  E-value=5.9e-07  Score=59.60  Aligned_cols=48  Identities=15%  Similarity=0.368  Sum_probs=38.6

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEccc-CCCeEEEEeCCCeeecCCC
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGS-PNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~P~I~W~~~dG~~i~~~~   65 (74)
                      ...+|.|+.. . ++.+.+|+.+.|.|.+.|. |.|+|+|++ ||..+....
T Consensus         4 ~~~~P~~~~~-~-~~~v~~G~~v~l~C~~~~~~p~~~v~W~~-~~~~~~~~~   52 (317)
T 2y25_A            4 PFTGPHFVEY-L-SWEVTGECNVLLKCKVANIKKETHIVWYK-DEREISVDE   52 (317)
T ss_dssp             SSSCCEEEEE-E-EEEEETTTEEEEEEEEESCCTTCEEEEEE-TTEEECCSC
T ss_pred             ccCCCcEeee-e-eEEECCCCeEEEEEEEcCCCCCCEEEEEE-CCeEcCCCC
Confidence            4578999854 4 4677889999999999998 889999997 787776443

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.38  E-value=2.4e-07  Score=58.71  Aligned_cols=37  Identities=19%  Similarity=0.432  Sum_probs=31.9

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEccc---CCCeEEEEe
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGS---PNPEIIWIR   55 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~---P~P~I~W~~   55 (74)
                      .|.|+.+| +++.+.+|++++|+|.+.|.   |.|+|+|++
T Consensus         7 ~~~F~~~P-~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~K   46 (126)
T 2dav_A            7 GILFIEKP-QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFK   46 (126)
T ss_dssp             SCSCCSCC-CCCEEETTCCEEEEEEEECCCSSSCCEEEEEE
T ss_pred             ccEEEEcC-CCeEEeCCCCEEEEEEEeccCCCCCCcEEEee
Confidence            36799996 55567889999999999986   999999998

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=98.38  E-value=9e-07  Score=60.58  Aligned_cols=44  Identities=32%  Similarity=0.581  Sum_probs=34.5

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC-CCeeecC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS-DGTAVGD   63 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~-dG~~i~~   63 (74)
                      +|.|+. |++.. +.+|+.+.|.|.|.|+|.|+|+|+++ +|..+..
T Consensus         1 ~P~i~~-~~~~~-~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~   45 (389)
T 2jll_A            1 QPHIIQ-LKNET-TYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTE   45 (389)
T ss_dssp             CCEEEE-CCCEE-EETTSEEEEEEEEECSSCCEEEEEETTTTEEECC
T ss_pred             CCeEEe-cCceE-EeCCCeEEEEEEeecccCCeEEEEeCCCCceecc
Confidence            477777 45543 55688899999999999999999985 2877754

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=98.38  E-value=3.7e-06  Score=53.57  Aligned_cols=44  Identities=27%  Similarity=0.526  Sum_probs=35.7

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      .|.+...| ....+..|+.+.|.|.+.|+|.|+|+|.+ ||..+..
T Consensus       110 ~p~~~~~~-~~~~~~~g~~v~l~C~~~g~p~p~i~W~~-~~~~~~~  153 (212)
T 2yd1_A          110 FPVITQGP-GTRVIEVGHTVLMTCKAIGNPTPNIYWIK-NQTKVDM  153 (212)
T ss_dssp             CCEEEECC-CCEEEETTCCEEECCEEECSSCCEEEEEE-TTEECCT
T ss_pred             CCeeEeCC-CceEeecCCeEEEEEEeccCCCCeEEEEE-CCeEccc
Confidence            37888875 44456778889999999999999999997 7777654

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.38  E-value=1.3e-06  Score=51.29  Aligned_cols=50  Identities=22%  Similarity=0.399  Sum_probs=38.3

Q ss_pred             CCCccceEEEcCCCc--EEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         14 DDTLGPIFIKEPPNR--IDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        14 ~~~~~P~fv~~Pp~~--v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      ....+|.++..|.+.  +....|+.+.|.|.+. +|.|+|+|++ ||..+....
T Consensus         6 ~v~~pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k-~g~~~~~~~   57 (113)
T 2cpc_A            6 SGTDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTK-DGEEVVESP   57 (113)
T ss_dssp             CCCSCSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEE-TTEECCCBT
T ss_pred             ccccCCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEE-CCEECccCC
Confidence            345678888886552  4566788899999996 8999999997 788775543

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=98.36  E-value=1.2e-06  Score=64.26  Aligned_cols=52  Identities=25%  Similarity=0.476  Sum_probs=40.7

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCCce
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR   68 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~~r   68 (74)
                      ..+|.|+..++....+..|..+.|.|.|.|+|.|+|+|++ ||..+......+
T Consensus       288 ~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k-~~~~l~~~~~~~  339 (570)
T 3b43_A          288 QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK-DETEIQESSKFR  339 (570)
T ss_dssp             BCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEE-TTEECCCSSSEE
T ss_pred             ecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeE-CCEECCCCCcEE
Confidence            4578888876555445678889999999999999999996 788776555433

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=98.35  E-value=8e-07  Score=60.80  Aligned_cols=46  Identities=22%  Similarity=0.650  Sum_probs=37.6

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      .+|.|+..|. ...+..|+.+.|.|.|.|+|.|+|+|++ ||..+...
T Consensus       311 ~~p~~~~~~~-~~~v~~g~~~~l~C~~~g~p~p~v~W~~-~g~~~~~~  356 (404)
T 3p3y_A          311 AAPYWLDEPK-NLILAPGEDGRLVCRANGNPKPTVQWMV-NGEPLQSA  356 (404)
T ss_dssp             EEEEEEECCC-CEEECTTCCEEEECEEEEESCCEEEEEE-TTEEGGGS
T ss_pred             CCCeeeccCC-cceeecCCcEEEEEEccccCCCceEEEE-CCEecCCC
Confidence            4678887754 4567788899999999999999999997 78877644

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=98.35  E-value=2.8e-06  Score=54.74  Aligned_cols=45  Identities=20%  Similarity=0.378  Sum_probs=36.1

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      +|.+...|. ...+..|..+.|.|.|.|+|.|+|+|++ ||..+...
T Consensus       118 ~p~~~~~~~-~~~v~~G~~v~L~C~~~g~p~~~v~W~~-~~~~~~~~  162 (218)
T 3k0w_A          118 KLQICVEPT-SQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPLTHE  162 (218)
T ss_dssp             SCEEEECCC-CEEECTTCCEEEECEEEBSSCCEEEEEE-TTEECTTC
T ss_pred             CceEEECCC-ceeecCCCcEEEEEEecccCCCeEEEEE-CCEECCCC
Confidence            377777754 4457788889999999999999999997 78776543

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=98.35  E-value=1.2e-06  Score=51.62  Aligned_cols=44  Identities=16%  Similarity=0.236  Sum_probs=34.3

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      .+|.|+..|.+ +.+..|+.+.|.|.+.|.  |+|+|++ ||..+...
T Consensus        18 ~pp~~~~~~~~-~~v~~G~~v~l~C~~~~~--p~v~W~k-~~~~l~~~   61 (113)
T 2edh_A           18 LPIKFTEGLRN-EEATEGATAVLRCELSKM--APVEWWK-GHETLRDG   61 (113)
T ss_dssp             SCCCEEECCCC-CEECTTSCEEEEEEESSC--CCCEEEE-SSSBCCCS
T ss_pred             CCCcccccCCc-eEEeCCCeEEEEEEECCC--CcEEEEE-CCEECCCC
Confidence            45688887554 467888899999999985  8899997 77776543

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=98.34  E-value=5.9e-07  Score=52.53  Aligned_cols=45  Identities=13%  Similarity=0.268  Sum_probs=35.2

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      ...+|.|+..| ..+.+..|+.+.|.|.+.|.  |.|+|++ ||..+..
T Consensus         5 ~~~pp~~~~~~-~~~~v~~G~~v~l~C~~~~~--p~v~W~k-~~~~~~~   49 (108)
T 2dm7_A            5 SSGPARFTQDL-KTKEASEGATATLQCELSKV--APVEWKK-GPETLRD   49 (108)
T ss_dssp             SCCCCCBCSCC-BCCEEETTSCEEEEEEBSSS--CCCEEES-SSSBCCS
T ss_pred             cCCCCeeeecC-CcEEEeCCCcEEEEEEeCCC--CeeEEEE-CCEECCC
Confidence            34678888775 55667889899999999986  7899996 6766654

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=98.34  E-value=1.9e-06  Score=56.59  Aligned_cols=45  Identities=16%  Similarity=0.271  Sum_probs=36.6

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccC-CCeEEEEeCCCeeecC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSP-NPEIIWIRSDGTAVGD   63 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P-~P~I~W~~~dG~~i~~   63 (74)
                      +|.+..+|.+ +.+..|+.+.|.|.+.|.| .|+|+|.+.||..+..
T Consensus         2 ~~~v~~~p~~-~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~   47 (291)
T 1qz1_A            2 VLQVDIVPSQ-GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP   47 (291)
T ss_dssp             CCCEEEESSS-EEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCS
T ss_pred             CcceEecCCC-ceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECcc
Confidence            4677888654 4577888999999999998 7999999878887753

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.33  E-value=2.9e-07  Score=65.90  Aligned_cols=47  Identities=17%  Similarity=0.338  Sum_probs=38.4

Q ss_pred             CCCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         14 DDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        14 ~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      ..+.+|.++..++..+.+..|+.++|.|.|.|+|.|+|+|++ +|..+
T Consensus       380 ~~C~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~~-~~~~~  426 (477)
T 2id5_A          380 FTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLS-PRKHL  426 (477)
T ss_dssp             SCCEEEEESCCSCEEEEEETTCCEEECCCEEEESCCEEEEEC-TTSCB
T ss_pred             eEeccccccccccccEEEeCCCeEEEEEeccccCCCEEEEEE-CCccc
Confidence            345677777776778888899999999999999999999997 55444

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.33  E-value=5.7e-07  Score=57.95  Aligned_cols=44  Identities=9%  Similarity=0.224  Sum_probs=34.4

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      +|.+...++..+.+.+|..+.|.|.|.|.|.|+|+|++ ||.++.
T Consensus       135 ~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k-~~~~~~  178 (250)
T 2fbo_J          135 SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYT-GPTFFE  178 (250)
T ss_dssp             CSCCEECCCSEEECCTTCCEEECCCEESCTTCEEEEEE-EEECSS
T ss_pred             CCeEEEecCceEEecCCCcEEEEEEecCCCCCeeEEEe-CCCccc
Confidence            34555565666667778899999999999999999997 666553

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=98.33  E-value=8.4e-07  Score=55.18  Aligned_cols=44  Identities=16%  Similarity=0.288  Sum_probs=35.3

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccC-CCeEEEEeCCCeeec
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSP-NPEIIWIRSDGTAVG   62 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P-~P~I~W~~~dG~~i~   62 (74)
                      ++.|...|+ .+.+..|+.+.|.|.+.|.| .|.|+|++.||..+.
T Consensus         2 p~~v~~~p~-~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~   46 (191)
T 1epf_A            2 VLQVDIVPS-QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS   46 (191)
T ss_dssp             -CCEEEESS-SEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEEC
T ss_pred             ceEEEecCC-CcEEcCCCCEEEEEECCCCCCCceEEEEeCCCcccc
Confidence            456777754 44577888999999999988 999999986888776

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=98.33  E-value=1.4e-06  Score=54.08  Aligned_cols=46  Identities=24%  Similarity=0.591  Sum_probs=36.0

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      .+|.+...| ....+..|..+.|.|.+.|+|.|+|+|.+ ||..+...
T Consensus        99 ~~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~~v~W~~-~~~~~~~~  144 (192)
T 2iep_A           99 MKPKITRPP-INVKIIEGLKAVLPCTTMGNPKPSVSWIK-GDSALREN  144 (192)
T ss_dssp             EEEEEEECC-CCEEEETTSCEEECCEEEEESCCEEEEEE-TTEECCCC
T ss_pred             eCCccccCC-cceEEeCCCcEEEEEEEeccCCceEEEEe-CCEEccCC
Confidence            356777664 45567788889999999999999999997 77776543

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=98.32  E-value=7.4e-07  Score=55.69  Aligned_cols=37  Identities=14%  Similarity=0.321  Sum_probs=30.3

Q ss_pred             cEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         28 RIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        28 ~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      .+....|+.+.|.|.|.|+|.|+|+|.+ ||..+....
T Consensus       113 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~-~~~~~~~~~  149 (197)
T 2j8h_A          113 AVHALRGEVVSIKIPFSGKPDPVITWQK-GQDLIDNNG  149 (197)
T ss_dssp             EEEEETTCCCEEEEEEEEESCCEEEEEE-SSCEECSSS
T ss_pred             eEEEeCCCEEEEEEEEEecCCCcEEEEE-CCEEeecCC
Confidence            4456678889999999999999999997 777776443

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=98.32  E-value=1.1e-06  Score=60.09  Aligned_cols=45  Identities=22%  Similarity=0.406  Sum_probs=36.2

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      .+|.+...| ....+..|+.+.|.|.|.|+|.|+|+|++ ||..+..
T Consensus       306 ~~p~~~~~~-~~~~v~~g~~~~l~C~~~g~p~p~i~W~~-~g~~i~~  350 (388)
T 2v5m_A          306 APLSAKIDP-PTQTVDFGRPAVFTCQYTGNPIKTVSWMK-DGKAIGH  350 (388)
T ss_dssp             EEEEEEEES-SEEEECTTSCEEEEEEEEEECCCEEEEEE-TTEECSC
T ss_pred             CCCccccCC-CcEEecCCCCEEEEEEeccccCCeEEEEE-CCEECcc
Confidence            356666665 44567788899999999999999999997 7887754

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=98.31  E-value=1.6e-06  Score=59.40  Aligned_cols=46  Identities=22%  Similarity=0.515  Sum_probs=37.4

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      .+|.|+..|. ......|+.+.|.|.|.|.|.|+|+|++ ||.++...
T Consensus       293 ~~p~~~~~~~-~~~~~~g~~~~l~C~~~g~p~p~v~W~~-~g~~~~~~  338 (382)
T 1cs6_A          293 AQPDWLDVIT-DTEADIGSDLRWSCVASGKPRPAVRWLR-DGQPLASQ  338 (382)
T ss_dssp             EEEEEEECCC-CEEEETTCCEEEECEEEEESCCEEEEEE-TTEECCCC
T ss_pred             cCCCcccCCC-ccEEcCCCeEEEEEEeeeecCCEEEEEE-CCEECCCC
Confidence            4678887754 4457788899999999999999999997 78877544

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.31  E-value=7.2e-07  Score=61.02  Aligned_cols=49  Identities=18%  Similarity=0.384  Sum_probs=39.2

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcc-cCCCeEEEEeCCCeeecCCC
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARG-SPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P~I~W~~~dG~~i~~~~   65 (74)
                      ...+|.|+..| ..+.+.+|+.+.|.|.+.| .|.|+|+|++ ||..+....
T Consensus         3 v~~~P~~~~~p-~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k-~g~~~~~~~   52 (395)
T 1bih_A            3 VDKYPVLKDQP-AEVLFRENNPTVLECIIEGNDQGVKYSWKK-DGKSYNWQE   52 (395)
T ss_dssp             --CCCEECCCC-SEEEEETTSCEEECCCEESCCSSCEEEEEE-SSSBCCTTT
T ss_pred             cCCCCEeecCC-CceEEeCCCEEEEEEEEecCCCCceEEEEE-CCcCccccc
Confidence            35789999885 5566788999999999999 9999999997 777765443

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=98.28  E-value=1.4e-06  Score=49.87  Aligned_cols=39  Identities=18%  Similarity=0.446  Sum_probs=30.4

Q ss_pred             cCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         24 EPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        24 ~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      .+|..+.+..|+.+.|.|.+.|  .|.|+|.+ ||..+....
T Consensus         6 ~~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k-~g~~~~~~~   44 (95)
T 4hwu_A            6 SQPEAYVVAPGESLELQCMLKD--AAVISWTK-DGVHLGPNN   44 (95)
T ss_dssp             --CEEEEECTTSCEEEECCCCT--TCEEEEEE-TTEEECCCS
T ss_pred             cCCCcEEECCCCEEEEEEEeCC--CCEEEEEE-CCEECCCCc
Confidence            3466667888999999999998  58999996 788875543

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=98.28  E-value=1.5e-06  Score=53.68  Aligned_cols=46  Identities=24%  Similarity=0.500  Sum_probs=33.3

Q ss_pred             cceEEEcCCC-cEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         18 GPIFIKEPPN-RIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        18 ~P~fv~~Pp~-~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      +|.+...+.. ......|..+.|.|.+.|+|.|+|+|++ ||..+...
T Consensus        96 ~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~-~g~~~~~~  142 (189)
T 2v5t_A           96 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR-NGKLIEEN  142 (189)
T ss_dssp             EEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEE-TTEECCCS
T ss_pred             CCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEE-CCEECcCC
Confidence            4444443322 3445678889999999999999999997 78776543

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=98.27  E-value=1.7e-06  Score=55.93  Aligned_cols=44  Identities=18%  Similarity=0.373  Sum_probs=36.7

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCC-eEEEEeCCCeeecC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSDGTAVGD   63 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P-~I~W~~~dG~~i~~   63 (74)
                      +|.|+.+|+.. .+..|+.+.|.|.+.|.|.| +|+|++ ||..+..
T Consensus         1 kP~i~~~p~~~-~v~~G~~v~l~C~~~~~~~~~~~~W~~-~g~~~~~   45 (262)
T 3rjd_A            1 KAVITLQPPWV-SVFQEETVTLHCEVLHLPGSSSTQWFL-NGTATQT   45 (262)
T ss_dssp             CCEEEESSCCS-EEETTCCEEEEEECSSCCCTTCEEEEE-TTEECSC
T ss_pred             CCeEecCCCcE-EeeCCCeEEEEEECCCCCCCceEEEEE-CCEEeec
Confidence            48899997664 45678889999999999999 999997 7887744

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.27  E-value=3.1e-06  Score=51.92  Aligned_cols=48  Identities=19%  Similarity=0.410  Sum_probs=37.6

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccC-CCeEEEEeCCCeeecCCCC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSP-NPEIIWIRSDGTAVGDVPG   66 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P-~P~I~W~~~dG~~i~~~~~   66 (74)
                      -.|.+..+|+.. .+..|+.+.|.|.+.|.| .++++|++ ||..+.....
T Consensus         3 p~p~i~~~p~~~-~v~~G~~v~l~C~~~~~p~~~~~~W~~-~g~~~~~~~~   51 (170)
T 3ry4_A            3 PKAVLKLEPPWI-NVLQEDSVTLTCQGARSPESDSIQWFH-NGNLIPTHTQ   51 (170)
T ss_dssp             CBCEEEEESCCS-EEETTCEEEEEEESCCCSSSSCEEEEE-TTEECTTCCS
T ss_pred             CCCEEEeCCCCe-EEECCCcEEEEEEecCCCCcceEEEEE-CCeEcccCcc
Confidence            467888887654 356788899999999998 78999997 8888765433

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=98.26  E-value=2.9e-06  Score=58.12  Aligned_cols=50  Identities=20%  Similarity=0.331  Sum_probs=37.8

Q ss_pred             cCCCccceEEEcCCCcEEecCCCCeEEEEEEcc-cCCCeEEEEeCCCeeecCC
Q psy11558         13 EDDTLGPIFIKEPPNRIDFSNTTGAQVECTARG-SPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        13 ~~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P~I~W~~~dG~~i~~~   64 (74)
                      ........|..+|++. .+.+|+.++|.|.+.| .|.|+|+|++ ||..+...
T Consensus        16 ~~~~~~~~~~~~P~~~-~v~~G~~v~L~C~~~~~~p~~~v~W~k-~g~~~~~~   66 (403)
T 3laf_A           16 HGGRRSLHFVSEPSDA-VTMRGGNVLLNCSAESDRGVPVIKWKK-DGLILALG   66 (403)
T ss_dssp             ---CCSSEEEECCCCE-EECTTCCEEECCEEECTTCCCEEEEEE-TTEECCTT
T ss_pred             cCCceeEEEEeCCCce-EEecCCcEEEEEEcCCCCCCceEEEEE-CCEECccC
Confidence            4456677888886554 5678889999999987 6899999996 88877543

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.26  E-value=3.7e-06  Score=53.97  Aligned_cols=47  Identities=21%  Similarity=0.484  Sum_probs=37.2

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC---CCeeecC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS---DGTAVGD   63 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~---dG~~i~~   63 (74)
                      ..|.+...++....+..|..+.|.|.+.|.|.|+|+|.+.   ||..+..
T Consensus       112 ~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~  161 (241)
T 3grw_A          112 HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGP  161 (241)
T ss_dssp             CCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCT
T ss_pred             CCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCC
Confidence            4566666666776777888999999999999999999973   6666543

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=98.26  E-value=2.4e-06  Score=56.16  Aligned_cols=45  Identities=27%  Similarity=0.437  Sum_probs=35.1

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      .+|.|...| ....+..|+.+.|.|.+.|.|.|+|+|.+ ||..+..
T Consensus        99 ~~~~~~~~~-~~~~~~~g~~v~l~C~~~~~p~~~v~W~~-~~~~~~~  143 (291)
T 1qz1_A           99 QKLMFKNAP-TPQEFKEGEDAVIVCDVVSSLPPTIIWKH-KGRDVIL  143 (291)
T ss_dssp             CCSEEEECC-SSEEEETTSCEEECCEEECSSCCEEEEEE-TTSCSST
T ss_pred             ccccccCCC-CcccccCCCeEEEEEEeccCCCCEEEEEE-CCEEccc
Confidence            456777765 44456788899999999999999999997 6665543

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=98.26  E-value=1.9e-06  Score=59.05  Aligned_cols=45  Identities=24%  Similarity=0.641  Sum_probs=36.3

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      .+|.|...| ..+....|..+.|.|.|.|+|.|+|+|.+ ||..+..
T Consensus       311 ~~p~~~~~~-~~~~~~~g~~v~l~C~~~g~p~p~v~W~~-~g~~~~~  355 (403)
T 3laf_A          311 VPPWFLNHP-SNLYAYESMDIEFECAVSGKPVPTVNWMK-NGDVVIP  355 (403)
T ss_dssp             EEEEEEECC-CCEECCTTCCEEECCEEEEESCCEEEEEE-TTEECCC
T ss_pred             CCCcEeecC-cceEEecCCeEEEEEEEeeccCCEEEEEE-CCEECCC
Confidence            467787775 44557788889999999999999999997 7776644

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.25  E-value=7.5e-07  Score=51.58  Aligned_cols=46  Identities=22%  Similarity=0.543  Sum_probs=34.1

Q ss_pred             cceEEEcCC--CcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         18 GPIFIKEPP--NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        18 ~P~fv~~Pp--~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      ++.|+..++  ..+.+..|+.+.|.|.+. .|.|.|+|++ ||..+....
T Consensus         8 p~~~~~~~~~~~~~~v~~G~~v~L~C~~~-~p~~~v~W~k-~g~~~~~~~   55 (102)
T 2eo1_A            8 KVVFAKEQPAHREVQAEAGASATLSCEVA-QAQTEVTWYK-DGKKLSSSS   55 (102)
T ss_dssp             CCCSCSSCCSCEEEEEETTCCEEECCBCS-CSSSCCEEEE-TTEECCCCS
T ss_pred             CEEecCcCCCcccEEEeCCCcEEEEEEec-CCCCceEEEE-CCEECCCCC
Confidence            344554432  345677888999999999 8999999996 788775544

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.25  E-value=6e-07  Score=55.82  Aligned_cols=43  Identities=16%  Similarity=0.251  Sum_probs=36.1

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEE-EcccCC-CeEEEEeCCCeee
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECT-ARGSPN-PEIIWIRSDGTAV   61 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~-A~G~P~-P~I~W~~~dG~~i   61 (74)
                      .|.|..+++..+.+..|+.+.|.|. +.|.|. |+|+|++ ||..+
T Consensus         7 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~-~~~~~   51 (201)
T 3s97_C            7 LDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLL-NEFPV   51 (201)
T ss_dssp             ECCCCSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEE-SSTTC
T ss_pred             CCccCcCCCceEEEECCCCEEEeccccccCCCceEEEEEE-CCcee
Confidence            4567777778888899999999999 999999 9999997 55444

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=98.25  E-value=1.4e-06  Score=55.33  Aligned_cols=32  Identities=31%  Similarity=0.616  Sum_probs=27.5

Q ss_pred             ecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         31 FSNTTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      ...|+.+.|.|.|.|.|.|+|+|.+++|..+.
T Consensus       128 ~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~  159 (222)
T 3sbw_C          128 DPVTSEHELTCQAEGYPKAEVIWTSSDHQVLS  159 (222)
T ss_dssp             ETTTTEEEEEEEEEEBSCCEEEEEETTCCEEC
T ss_pred             ecCCCcEEEEEEecCCCCCeEEEEECCCceec
Confidence            45677899999999999999999987687654

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=98.24  E-value=2.4e-06  Score=53.45  Aligned_cols=44  Identities=11%  Similarity=0.271  Sum_probs=33.7

Q ss_pred             ccceEEEcCCCcEEecC-CCCeEEEEEEcccCC--CeEEEEeCCCeeecC
Q psy11558         17 LGPIFIKEPPNRIDFSN-TTGAQVECTARGSPN--PEIIWIRSDGTAVGD   63 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~-g~~v~L~C~A~G~P~--P~I~W~~~dG~~i~~   63 (74)
                      .+|.++.. ++. .+.+ |+.+.|.|.+.|.|.  |+|+|++ ||..+..
T Consensus         2 ~~P~i~~~-~~~-~v~~~G~~v~l~C~~~~~~~~~~~v~W~~-~~~~~~~   48 (190)
T 2wv3_A            2 NEPRIVTS-EEV-IIRDSLLPVTLQCNLTSSSHTLMYSYWTK-NGVELTA   48 (190)
T ss_dssp             -CCEEEEC-CCE-ECCCSSSCEEEEEEEEECSSCEEEEEEEE-TTEECTT
T ss_pred             CCCccccc-ceE-EEccCCceEEEEEEeccCCCCceEEEEEE-CCEECcc
Confidence            46787774 443 3555 888999999999998  9999997 7777654

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=98.23  E-value=1.6e-06  Score=51.14  Aligned_cols=36  Identities=17%  Similarity=0.370  Sum_probs=29.7

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD   57 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~d   57 (74)
                      +++. |..+....|++++|.|.+.|.|.|.|.|++.+
T Consensus         4 v~q~-p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~   39 (108)
T 1jhl_L            4 LTQS-PSYLVASPGETITINCRASKSISKSLAWYQEK   39 (108)
T ss_dssp             EEEE-CSEEEECTTSCEEEEEEESSCCTTCEEEEEEC
T ss_pred             eecc-CCeeEEcCCCCEEEEeEECCCCCceEEEEEEC
Confidence            3454 55566788999999999999999999999853

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=98.23  E-value=8.4e-07  Score=55.44  Aligned_cols=41  Identities=12%  Similarity=0.430  Sum_probs=33.2

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCe
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT   59 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~   59 (74)
                      +..+..++..+.+..|+.+.|.|.+.|.|.|.|+|+++++.
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~   44 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGD   44 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETT
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCc
Confidence            44455556777788899999999999999999999985543

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=98.22  E-value=2.6e-06  Score=55.25  Aligned_cols=47  Identities=13%  Similarity=0.300  Sum_probs=37.6

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCe-EEEEeCCCeeecCC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPE-IIWIRSDGTAVGDV   64 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~-I~W~~~dG~~i~~~   64 (74)
                      ...|.+..+|+.. .+.+|+.++|.|.+.|.|.|. |+|++ ||..+...
T Consensus         5 ~p~p~i~~~p~~~-~v~~G~~v~L~C~~~~~p~~~~v~W~k-~g~~l~~~   52 (204)
T 3sgj_C            5 LPKAVVFLEPQWY-RVLEKDSVTLKCQGAYSPEDQSTQWFH-NESLISSQ   52 (204)
T ss_dssp             -CBCEEEEESCCS-EEETTCCEEEEEECCSSSSCCCEEEEE-TTEEESCC
T ss_pred             CCCCeEEEcCCCe-EEECCCCEEEEEcCCCCCCCcEEEEEE-CCEEcccC
Confidence            4578899997654 466788999999999999987 99997 78877543

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=98.21  E-value=2.7e-06  Score=58.19  Aligned_cols=47  Identities=19%  Similarity=0.349  Sum_probs=36.2

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      .+|.|... +..+....|+.+.|.|.|.|+|.|+|+|.+ ||..+....
T Consensus        99 ~~P~~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~-~g~~l~~~~  145 (389)
T 2jll_A           99 YAPKFISN-QTIYYSWEGNPINISCDVKSNPPASIHWRR-DKLVLPAKN  145 (389)
T ss_dssp             EEEEECCS-CCEEEECTTCCEEEEECEEEESCCEEEEEE-TTEESSCTT
T ss_pred             eCCEEecC-cceEEeccCCEEEEEEEEEecCCCeEEEEE-CCccCCccc
Confidence            46666654 444456778889999999999999999997 788776543

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=98.21  E-value=4.5e-06  Score=51.61  Aligned_cols=38  Identities=11%  Similarity=0.239  Sum_probs=30.8

Q ss_pred             CcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         27 NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        27 ~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      .......|..+.|.|.+.|.|.|+|+|.+ ||..+....
T Consensus       111 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~-~~~~~~~~~  148 (197)
T 3lcy_A          111 EKYYGAVGSTLRLHVMYIGRPVPAMTWFH-GQKLLQNSE  148 (197)
T ss_dssp             SEEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCCS
T ss_pred             cceeecCCCeEEEEEEEeeeeCCeeEEeE-CCEECCCCC
Confidence            34455678889999999999999999997 788776544

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.20  E-value=4.1e-06  Score=51.99  Aligned_cols=45  Identities=16%  Similarity=0.258  Sum_probs=35.0

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccC-CCeEEEEe---CCCeeec
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSP-NPEIIWIR---SDGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P-~P~I~W~~---~dG~~i~   62 (74)
                      .+|.+...| .......|+.+.|.|.|.|+| .|+|+|++   +++..+.
T Consensus        82 ~~P~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~  130 (184)
T 3b5h_A           82 GPPRVKAVK-SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALM  130 (184)
T ss_dssp             CSCCCEESC-SEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECC
T ss_pred             cCCceeecC-CCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEee
Confidence            467777775 444567888999999999999 89999998   4555443

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.19  E-value=3.8e-06  Score=53.16  Aligned_cols=45  Identities=22%  Similarity=0.482  Sum_probs=34.9

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC---CCeeec
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS---DGTAVG   62 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~---dG~~i~   62 (74)
                      +|.+....+....+..|..+.|.|.+.|+|.|+|+|.+.   ||..+.
T Consensus       117 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~  164 (231)
T 3ojm_B          117 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG  164 (231)
T ss_dssp             CCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBC
T ss_pred             CCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCcccc
Confidence            455555545666677888999999999999999999973   666553

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=98.18  E-value=1.9e-06  Score=53.93  Aligned_cols=37  Identities=16%  Similarity=0.443  Sum_probs=30.8

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCe
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT   59 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~   59 (74)
                      ..++..+.+.+|+.+.|.|.+.|.|.|.|+|+++++.
T Consensus         5 ~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~   41 (212)
T 1f97_A            5 YTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGS   41 (212)
T ss_dssp             ECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETT
T ss_pred             EecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCc
Confidence            3446677788899999999999999999999985543

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=98.17  E-value=2.1e-06  Score=61.75  Aligned_cols=47  Identities=4%  Similarity=-0.012  Sum_probs=35.0

Q ss_pred             ccceEEEcCC-CcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         17 LGPIFIKEPP-NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        17 ~~P~fv~~Pp-~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      .+|.+...|. ..+.+.+|+.+.|.|.|.|+|.|+|+|++ ||.+|...
T Consensus       323 ~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k-~g~~l~~~  370 (423)
T 3qs7_E          323 EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF-SRKSFPCE  370 (423)
T ss_dssp             SSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEE-TTEEEECB
T ss_pred             eCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEE-CCEECCCc
Confidence            3555555543 34556678889999999999999999996 78887543

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=98.17  E-value=2.5e-06  Score=55.75  Aligned_cols=46  Identities=15%  Similarity=0.148  Sum_probs=34.1

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEc-ccCCCeEEEEeCCCeeecCCCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTAR-GSPNPEIIWIRSDGTAVGDVPG   66 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~-G~P~P~I~W~~~dG~~i~~~~~   66 (74)
                      .|.|+...  .+.+.+|+.+.|.|.+. |+|.|+|+|++ ||.+|.....
T Consensus         3 ~p~~~~~~--~~~v~eg~~v~l~c~~~~~~P~p~i~W~k-ng~~l~~~~~   49 (207)
T 3rbs_A            3 DPFTKSEL--AVEILEKGQVRFWMQAEKLSGNAKVNYIF-NEKEIFEGPK   49 (207)
T ss_dssp             ---CCEEE--EEEECGGGCEEEEEECSCCCSCCEEEEEE-TTEEECSSSS
T ss_pred             CCeeecCC--ceEEEeCCeEEEEEEEecCCCCCEEEEEE-CCEECccCCC
Confidence            46666653  45677888899999996 58999999996 8988865543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.16  E-value=4e-06  Score=59.89  Aligned_cols=49  Identities=18%  Similarity=0.500  Sum_probs=39.3

Q ss_pred             CCCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         14 DDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        14 ~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      ..+.+|.++.. +..+.+.+|+.++|.|.| |.|.|+|+|.+++|..+...
T Consensus       337 ~~C~~P~i~~~-~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~  385 (440)
T 3zyj_A          337 FTCYAPVIVEP-PADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHG  385 (440)
T ss_dssp             SCCCCCCEEEC-CCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESS
T ss_pred             ccCCCCccccc-ccceeeccCceEEEEeec-CCCCCceEEEeCCCceeecc
Confidence            34668888876 566678899999999999 56999999998788766543

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=98.16  E-value=3.1e-06  Score=55.95  Aligned_cols=47  Identities=13%  Similarity=0.081  Sum_probs=37.1

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEc-ccCCCeEEEEeCCCeeecCCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTAR-GSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~-G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      .|.+...++....+..|+.+.|.|.+. |+|.|+|+|++ ||..+....
T Consensus       106 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~-~~~~i~~~~  153 (312)
T 2y23_A          106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIF-NEKEIFEGP  153 (312)
T ss_dssp             SCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEE-TTEEECSSS
T ss_pred             CCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEE-CCEECeeCC
Confidence            555555544466777888999999999 99999999997 788776654

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=98.15  E-value=7.5e-07  Score=59.48  Aligned_cols=43  Identities=26%  Similarity=0.510  Sum_probs=34.6

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCC-eEEEEeCCC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSDG   58 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P-~I~W~~~dG   58 (74)
                      ..+|.+...+.+.....+|+.++|.|.|.|+|+| .|+|+++|+
T Consensus       209 ~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~  252 (308)
T 4fom_A          209 QYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDG  252 (308)
T ss_dssp             CEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSS
T ss_pred             ecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCe
Confidence            4567777777666667788889999999999999 699997544

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=98.15  E-value=4.2e-06  Score=52.95  Aligned_cols=42  Identities=14%  Similarity=0.131  Sum_probs=34.1

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      ..+|.+..+|..  .+..|+.++|.|.|.| |.|.++|.+ ||..+
T Consensus         3 ~~~P~i~~~p~~--~v~~G~~v~L~C~~~~-~~~~~~w~k-~g~~~   44 (196)
T 3p2t_A            3 LPKPTLWAEPGS--VISWGNSVTIWCQGTL-EAREYRLDK-EESPA   44 (196)
T ss_dssp             BCCCEEEEESCS--EEETTCCEEEEEECCT-TCCEEEEEE-TTSCS
T ss_pred             CCCCEEEccCCC--cCCCCCcEEEEeeCCC-CCCEEEEEE-CCCCC
Confidence            457899999765  3567888999999999 889999997 56544

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=98.15  E-value=6.2e-06  Score=51.43  Aligned_cols=47  Identities=15%  Similarity=0.344  Sum_probs=37.4

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCe-EEEEeCCCeeecC
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPE-IIWIRSDGTAVGD   63 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~-I~W~~~dG~~i~~   63 (74)
                      ....|.+..+|... .+.+|+.+.|.|.+.|.|.|. ++|++ ||..+..
T Consensus         4 ~~~~p~i~~~p~~~-~v~~G~~v~L~C~~~~~p~~~~~~W~~-~~~~~~~   51 (175)
T 1fnl_A            4 DLPKAVVFLEPQWY-SVLEKDSVTLKCQGAYSPEDNSTQWFH-NESLISS   51 (175)
T ss_dssp             CCCCCEEEEESCCS-EEETTCCEEEEEECCCBTTBCCCEEEE-TTEEEES
T ss_pred             CCCCCEEEEcCCce-eeeCCCcEEEEeeCCCCCCCcceEEEE-CCEEccC
Confidence            34678999997653 456788899999999999988 89997 7777654

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=98.14  E-value=8.3e-06  Score=61.63  Aligned_cols=50  Identities=20%  Similarity=0.390  Sum_probs=41.2

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCCc
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGL   67 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~~   67 (74)
                      ...|.|+..+ .+.....|+++.|.|.+.|.|+|+|+|.+ ||..|......
T Consensus       480 ~~~P~~~~~~-~~~~v~~G~~~~~~~~v~g~P~P~v~W~k-~~~el~~s~~~  529 (573)
T 3uto_A          480 EAQPRFIVKP-YGTEVGEGQSANFYCRVIASSPPVVTWHK-DDRELKQSVKY  529 (573)
T ss_dssp             GGSCEEEECC-CCEEECTTSCEEEEEEEECSSCCEEEEEE-TTEECCSSSSE
T ss_pred             ccCCccccCC-CCcEEeCCCcEEEEEEEEccCCCeEEEEE-CCEEcccCCcE
Confidence            4578999885 55567889999999999999999999996 78887765543

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=98.14  E-value=1.4e-06  Score=57.35  Aligned_cols=34  Identities=29%  Similarity=0.655  Sum_probs=28.4

Q ss_pred             EecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         30 DFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        30 ~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      .+..|+.+.|.|.|.|+|.|+|+|.+ ||..+...
T Consensus       205 ~~~~g~~~~l~C~~~g~p~p~v~W~~-~g~~~~~~  238 (291)
T 2wim_A          205 TAERGEEMTFSCRASGSPEPAISWFR-NGKLIEEN  238 (291)
T ss_dssp             CSSSCCEEEEECBCCCBSCCEEEEEE-TTEECCCT
T ss_pred             eecCCCeEEEEEEeecCCCCeEEEEE-CCEECcCC
Confidence            34567789999999999999999996 78877543

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.13  E-value=8.4e-06  Score=51.82  Aligned_cols=46  Identities=17%  Similarity=0.437  Sum_probs=33.7

Q ss_pred             cceEEEcCCCcEEecCCCCe-EEEEEE-cccCCCeEEEEeCCCeeecCCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGA-QVECTA-RGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v-~L~C~A-~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      .|.+...+ ..+.+..|..+ .|.|.| .|.|.|+|+|.+ ||.++....
T Consensus       118 ~~~~~~~~-~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~-~~~~~~~~~  165 (231)
T 2pet_A          118 ATEVSPNK-GTLSVMEDSAQEIATCNSRNGNPAPKITWYR-NGQRLEVPV  165 (231)
T ss_dssp             CCEEEECC-SSCCTTCCSEEEEEEEEEEEEBSCCEEEEEE-TTEECCCCS
T ss_pred             CcEEecCC-cceeecCCCceEEEEEEeECcccCCEEEEEE-CCccCcccc
Confidence            35666553 33344566666 999999 999999999997 788776544

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=98.12  E-value=3.5e-06  Score=53.45  Aligned_cols=35  Identities=14%  Similarity=0.426  Sum_probs=29.1

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      +++. |..+.+..|+++.|.|.+.|.|.|.|+|++.
T Consensus         4 v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~   38 (213)
T 3d9a_L            4 LTQS-PATLSVTPGNSVSLSCRASQSIGNNLHWYQQ   38 (213)
T ss_dssp             EEEE-CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             EEeC-CccEEEeCCCcEEEEEECCCCCCCCEEEEEe
Confidence            3444 5666788899999999999999999999874

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.12  E-value=4.3e-06  Score=54.35  Aligned_cols=45  Identities=18%  Similarity=0.406  Sum_probs=32.9

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~   62 (74)
                      ..+|.+...|+.... ..|..+.|.|.|.| .|+| +|+|.+ ||..+.
T Consensus       115 ~~~P~v~~~~~~~~~-~~g~~~~L~C~~~g~~P~~~~v~W~k-~g~~~~  161 (218)
T 2rgs_A          115 VRAPQVYILPPPAEQ-LSRKDVSLTCLVVGFNPGDISVEWTS-NGHTEE  161 (218)
T ss_dssp             CBCCEEEEECCCGGG-TTSSEEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             CCCCEEEEECCChHH-hcCCceEEEEEEEeeeCCCcEEEEEE-CCEecc
Confidence            456776666555432 24777999999999 6877 999997 777664

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=98.11  E-value=7.3e-06  Score=53.79  Aligned_cols=47  Identities=19%  Similarity=0.306  Sum_probs=37.9

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      ..|.|+.+| +.+.+..|+.+.|.|.+.|.|. .|+|.+.||..+....
T Consensus         3 ~~p~v~~~~-~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~   49 (291)
T 2wim_A            3 ALLQVTISL-SKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQ   49 (291)
T ss_dssp             CCCEEEESC-SEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBT
T ss_pred             CCceEEEec-cceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCC
Confidence            568888885 5556788989999999999985 9999987888765433

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.11  E-value=2.1e-06  Score=55.88  Aligned_cols=47  Identities=23%  Similarity=0.336  Sum_probs=33.2

Q ss_pred             CCccceEEEcCCCcEE-ecCCCCeEEEEEEccc---CC-CeEEEEeCCCeeec
Q psy11558         15 DTLGPIFIKEPPNRID-FSNTTGAQVECTARGS---PN-PEIIWIRSDGTAVG   62 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~-~~~g~~v~L~C~A~G~---P~-P~I~W~~~dG~~i~   62 (74)
                      ...+|.+...|++... +..|++++|.|.|.|.   |. |+|+|++ ||..+.
T Consensus         6 ~~~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k-~~~~~~   57 (218)
T 2rgs_A            6 LEGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFV-NNVEVH   57 (218)
T ss_dssp             ---CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEE-TTEEEC
T ss_pred             CCCCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEE-CCcccc
Confidence            4567777666776543 5678899999999998   44 8999997 555553

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=98.09  E-value=1.9e-06  Score=51.21  Aligned_cols=35  Identities=14%  Similarity=0.459  Sum_probs=26.9

Q ss_pred             CCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         25 PPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        25 Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      |+..+.. .|++++|.|.|.|+|.  |+|.+ ||.+|..
T Consensus         6 p~~~v~~-~G~~v~L~C~~~g~P~--i~W~k-dg~~l~~   40 (82)
T 3r08_E            6 IEYKVSI-SGTSVELTCPLDSDEN--LKWEK-NGQELPQ   40 (82)
T ss_dssp             CCCEEEE-ETTEEEEECSSCCCSS--CEEEE-TTEECTT
T ss_pred             CceeEEE-cCCeEEEEEECCCCCc--EEEEE-CCEECcC
Confidence            4455544 5778999999999994  99997 7887753

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.09  E-value=5.1e-06  Score=53.16  Aligned_cols=40  Identities=13%  Similarity=0.295  Sum_probs=31.5

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      ...+.+++.| ..+.+..|++++|.|.+.|.|.|.|+|++.
T Consensus        22 ~~~~~v~~~p-~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~   61 (237)
T 3sob_L           22 YADIQMTQSP-SSLSASVGDRVTITCRASQDVSTAVAWYQQ   61 (237)
T ss_dssp             --CCCEEEEC-SEEEEETTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CccceEEeCC-CeEEEeCCCcEEEEEecCCCCCceEEEEEE
Confidence            3455667764 555677898999999999999999999874

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=98.09  E-value=3.2e-06  Score=56.66  Aligned_cols=44  Identities=14%  Similarity=0.228  Sum_probs=35.0

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCe-EEEEeCCCeee
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPE-IIWIRSDGTAV   61 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~-I~W~~~dG~~i   61 (74)
                      .+|.+...++....+..|+.+.|.|.|.|+|.|. |+|.+ ||..+
T Consensus       230 ~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~-~~~~~  274 (331)
T 3u83_A          230 YEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTT-LNGSL  274 (331)
T ss_dssp             EEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEE-TTBSC
T ss_pred             cCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEE-CCCcc
Confidence            4677776666665677888999999999999999 99997 45444

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=98.09  E-value=4.9e-06  Score=55.00  Aligned_cols=42  Identities=17%  Similarity=0.502  Sum_probs=33.7

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCC-eEEEEeCCCeeec
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P-~I~W~~~dG~~i~   62 (74)
                      +|.|+..+.  ..+..|..+.|.|.|.|.|.| +|+|++ ||..+.
T Consensus       222 ~p~~~~~~~--~~v~~G~~~~l~C~~~~~p~~~~v~W~~-~g~~~~  264 (312)
T 2y23_A          222 GPHFVEYLS--WEVTGECNVLLKCKVANIKKETHIVWYK-DEREIS  264 (312)
T ss_dssp             SSEEEEEEE--EEEETTTEEEEEEEEESCCSSCEEEEEE-TTEEEE
T ss_pred             CCceeecce--EEEeCCCEEEEEEEEcCCCCCCEEEEee-CCEECC
Confidence            477775432  456788889999999999999 999997 788776

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=98.09  E-value=6.1e-06  Score=52.33  Aligned_cols=42  Identities=14%  Similarity=0.263  Sum_probs=34.1

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      ..+|.|..+|..  .+.+|+.++|.|.|.|.|. .++|.+ ||..+
T Consensus         3 ~~~P~i~~~p~~--~v~~G~~v~L~C~~~~~~~-~~~W~k-~g~~~   44 (196)
T 2d3v_A            3 LSKATLWAEPGS--VISRGNSVTIRCQGTLEAQ-EYRLVK-EGSPE   44 (196)
T ss_dssp             CCBCEEEEESCS--EEETTCCEEEEEECCTTCC-EEEEEE-TTCSS
T ss_pred             CCCCEEEeCCCC--cccCCCeEEEEEeCCCCCc-EEEEEE-CCCCC
Confidence            467999999764  4568889999999999876 999997 66554

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=98.08  E-value=9.8e-06  Score=53.14  Aligned_cols=45  Identities=22%  Similarity=0.197  Sum_probs=35.6

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcc-cCCCeEEEEeCCCeeecC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARG-SPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P~I~W~~~dG~~i~~   63 (74)
                      .+|.+...|... .+..|+.+.|.|.|.| .|.|+|+|.+ ||..+..
T Consensus       185 ~~p~i~~~~~~~-~~~~g~~~~l~C~~~~~~p~~~i~W~~-~~~~~~~  230 (289)
T 3ejj_X          185 EPPQIKLEPSKL-VRIRGEAAQIVCSATNAEVGFNVILKR-GDTKLEI  230 (289)
T ss_dssp             CCCEEEEESSSE-ECCSSSCEEEEEEEEESSSCCEEEEEE-TTEECCC
T ss_pred             CCCeEEecCCce-EEEeCCcEEEEEEeCCCCCceEEEEEE-CCEEeec
Confidence            577888875544 4567888999999999 8999999997 6766643

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=98.07  E-value=6.1e-06  Score=51.69  Aligned_cols=37  Identities=32%  Similarity=0.693  Sum_probs=30.5

Q ss_pred             CcEEecCCCCeEEEEEE-cccCCCeEEEEeCCCeeecCC
Q psy11558         27 NRIDFSNTTGAQVECTA-RGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        27 ~~v~~~~g~~v~L~C~A-~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      ....+..|+.+.|.|.+ .|.|.|+|+|.+ ||..+...
T Consensus       119 ~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~-~~~~l~~~  156 (212)
T 2v9r_A          119 SDVMVAVGEPAVMECQPPRGHPEPTISWKK-DGSPLDDK  156 (212)
T ss_dssp             CCEEEETTSCEEEECBCCCEESCCEEEEEE-TTEEECTT
T ss_pred             CceEecCCCcEEEEEecCCCCCCCEEEEEE-CCccCCCC
Confidence            44556788889999999 999999999997 78777643

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=98.07  E-value=4e-06  Score=53.88  Aligned_cols=43  Identities=26%  Similarity=0.497  Sum_probs=30.6

Q ss_pred             ceEEEcCCCcEE-ecCCCCeEEEEEEcccCC--C--eEEEEeCCCeeec
Q psy11558         19 PIFIKEPPNRID-FSNTTGAQVECTARGSPN--P--EIIWIRSDGTAVG   62 (74)
Q Consensus        19 P~fv~~Pp~~v~-~~~g~~v~L~C~A~G~P~--P--~I~W~~~dG~~i~   62 (74)
                      |.....||+... ...|+.+.|.|.|.|.|+  |  +|+|++ ||.++.
T Consensus         2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k-~~~~~~   49 (207)
T 1l6x_A            2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYV-DGVEVH   49 (207)
T ss_dssp             CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEE-TTEEEC
T ss_pred             CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEE-CCcccc
Confidence            444444565533 257889999999999863  4  999997 676654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.06  E-value=3.4e-06  Score=58.20  Aligned_cols=44  Identities=16%  Similarity=0.244  Sum_probs=36.3

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCe
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT   59 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~   59 (74)
                      .+.+|.|...|.. +.+..|+.+.|.|.|.|.|.|+|+|+++++.
T Consensus       155 ~c~~P~i~~~~~~-~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~  198 (347)
T 2ifg_A          155 SCGVPTLKVQVPN-ASVDVGDDVLLRCQVEGRGLEQAGWILTELE  198 (347)
T ss_dssp             TCCCCEEEEECCS-SCCBTTCCEEEEEEEECSSCCCCCEEESCCC
T ss_pred             cCCCCceeccCCc-eEEeCCCcEEEEEEEecCCCCEEEEEcCCce
Confidence            3568999988654 4577888999999999999999999986544

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.06  E-value=1.2e-06  Score=58.96  Aligned_cols=45  Identities=22%  Similarity=0.524  Sum_probs=34.5

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC---CCeeec
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS---DGTAVG   62 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~---dG~~i~   62 (74)
                      +|.+...++....+..|..+.|.|.|.|+|.|+|+|++.   ||..+.
T Consensus       221 ~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~  268 (334)
T 1ry7_B          221 RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVG  268 (334)
T ss_dssp             SCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBC
T ss_pred             CCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCcccc
Confidence            455555445566677888899999999999999999985   566553

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=98.06  E-value=5.3e-06  Score=54.72  Aligned_cols=38  Identities=8%  Similarity=0.072  Sum_probs=30.8

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      .+|.+...|+.. .+..|+.+.|.|.|.|+|.|+|+|.+
T Consensus       180 ~~p~i~~~~~~~-~v~~G~~v~L~C~~~g~p~p~v~W~~  217 (289)
T 3mjg_X          180 SSINVSVNAVQT-VVRQGENITLMCIVIGNEVVNFEWTY  217 (289)
T ss_dssp             CCCCCEEEESCS-EEETTSCEEEEEEEESCSSBEEEEEC
T ss_pred             CCCCcEEeCCcc-eeEcCCCEEEEEEECCCCCcceEEEc
Confidence            456666665554 46678899999999999999999996

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=98.04  E-value=4e-06  Score=53.15  Aligned_cols=44  Identities=34%  Similarity=0.714  Sum_probs=33.9

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEE-cccCCCeEEEEeCCCeeecC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTA-RGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A-~G~P~P~I~W~~~dG~~i~~   63 (74)
                      +|.+...| ....+..|+.+.|.|.+ .|.|.|+|+|.+ ||.++..
T Consensus       108 ~~~~~~~~-~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~-~g~~~~~  152 (217)
T 2vr9_A          108 RDDFRVEP-KDTRVAKGETALLECGPPKGIPEPTLIWIK-DGVPLDD  152 (217)
T ss_dssp             CCSCSBCC-CCEEECTTSCEEECCBCCCEESCCEEEEEE-TTEEECC
T ss_pred             CCCcEECC-CccEEcCCCeEEEEEECCCCCCCCeEEEEE-CCcCCCc
Confidence            34444443 44557788889999999 999999999997 7887763

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=98.04  E-value=2e-06  Score=55.92  Aligned_cols=45  Identities=27%  Similarity=0.396  Sum_probs=31.5

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCC--eEEEEeCCCeeecC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNP--EIIWIRSDGTAVGD   63 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P--~I~W~~~dG~~i~~   63 (74)
                      .|.+...++....+..|..++|.|.|.|.|+|  +|+|.+ ||..+..
T Consensus       124 ~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~l~~  170 (246)
T 4dzb_B          124 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHS  170 (246)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECT
T ss_pred             CCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEE-CCEECCC
Confidence            44444333443334457789999999998866  999997 8888754

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=98.04  E-value=1.1e-05  Score=50.84  Aligned_cols=39  Identities=8%  Similarity=0.145  Sum_probs=30.4

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCC-----CeEEEEeCCCee
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPN-----PEIIWIRSDGTA   60 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~-----P~I~W~~~dG~~   60 (74)
                      +..|++.+.+..|+++.|.|.+.|.|.     |.|+|++.++..
T Consensus         5 v~~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~   48 (202)
T 3bp6_B            5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDT   48 (202)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--C
T ss_pred             EecCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcc
Confidence            455677777889999999999999998     999999855543

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=98.03  E-value=5.4e-06  Score=54.83  Aligned_cols=42  Identities=12%  Similarity=0.256  Sum_probs=33.9

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCe-EEEEeCCCe
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPE-IIWIRSDGT   59 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~-I~W~~~dG~   59 (74)
                      .+|.|...|... .+..|+.+.|.|.|.|.|.|. |+|+++++.
T Consensus       187 ~~P~i~~~~~~~-~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~  229 (290)
T 2o26_X          187 AIPVVSVPETSH-LLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQ  229 (290)
T ss_dssp             SCCEEECSCSBC-CCCTTCCEEEEEEEEESSTTCEEEEEEESSS
T ss_pred             CCCccccCCCcc-eEecCCcEEEEEEEecCCcceeEEEecCCCC
Confidence            678887776554 577888999999999999997 999985443

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=98.03  E-value=8.3e-06  Score=51.66  Aligned_cols=37  Identities=14%  Similarity=0.277  Sum_probs=30.6

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      |.+++. |..+.+..|+.++|.|.+.|.|.|.|+|++.
T Consensus         2 ~~v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~   38 (213)
T 3r06_A            2 IQMTQS-PSSLPASLGDRVTINCQASQDISNYLNWYQQ   38 (213)
T ss_dssp             CCEEEE-CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CeeEeC-CCEEEecCCCcEEEEEEeCCCcCceEEEEEE
Confidence            455665 4566788899999999999999999999873

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=98.03  E-value=1.4e-05  Score=50.47  Aligned_cols=41  Identities=7%  Similarity=-0.024  Sum_probs=33.5

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCe
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT   59 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~   59 (74)
                      ...+|.+...|..  .+.+|+.++|.|.|.| |.|.++|.+ ||.
T Consensus         5 ~~~~P~i~~~p~~--~v~~G~~v~L~C~~~~-~~~~~~W~k-~g~   45 (184)
T 2gi7_A            5 PLPKPSLQALPSS--LVPLEKPVTLRCQGPP-GVDLYRLEK-LSS   45 (184)
T ss_dssp             CBCCCEEEEESCS--EEETTCCEEEEEECST-TCSEEEEEE-TTT
T ss_pred             CCCCCeEEeCCCc--cccCCCcEEEEEeCCC-CCCEEEEEE-CCc
Confidence            3568899988764  4668889999999999 899999997 454

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=98.03  E-value=7.2e-06  Score=48.50  Aligned_cols=38  Identities=13%  Similarity=0.283  Sum_probs=31.0

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD   57 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~d   57 (74)
                      +.+++. |..+...+|++++|.|.+.|.|.|.|.|++.+
T Consensus         4 ~~v~q~-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~   41 (109)
T 2q20_A            4 IQMTQS-PSSLSASVGDRVTITCQASQDISNYLNWYQQK   41 (109)
T ss_dssp             CCEEEE-CSEEEECTTCCEEEEEEESSCCTTCEEEEEEC
T ss_pred             ccEEee-CCEEEecCCCcEEEEEeeccCCCCcEEEEEEC
Confidence            345565 45567888999999999999999999999854

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=98.02  E-value=7.6e-06  Score=60.03  Aligned_cols=42  Identities=17%  Similarity=0.415  Sum_probs=33.1

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      .+...| ....+..|+.+.|.|.|.|+|.|+|+|++ ||.++..
T Consensus       561 ~~~~~~-~~~~v~~g~~~~l~C~~~g~p~p~v~W~~-~g~~i~~  602 (642)
T 1e07_A          561 TPIISP-PDSSYLSGANLNLSCHSASNPSPQYSWRI-NGIPQQH  602 (642)
T ss_pred             cceecC-CceeEEcCCcEEEEEEeccCCCCeEEEEE-CCEECcc
Confidence            344443 44556778889999999999999999996 7887754

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.02  E-value=1.1e-05  Score=51.89  Aligned_cols=43  Identities=19%  Similarity=0.230  Sum_probs=33.2

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeCCCee
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRSDGTA   60 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~dG~~   60 (74)
                      ..|.+...|+..+.+..|+.++|.|.|.|.|  .++|+|.+ +|..
T Consensus       103 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~-~g~~  147 (213)
T 2x1w_L          103 RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEY-PSSK  147 (213)
T ss_dssp             CEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEEC-SCSS
T ss_pred             cccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEe-cCCc
Confidence            3566777777776778899999999999966  45899986 5544

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=98.02  E-value=5.2e-06  Score=54.36  Aligned_cols=45  Identities=29%  Similarity=0.536  Sum_probs=31.7

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEccc-CCC-eEEEEeCCCeeecC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGS-PNP-EIIWIRSDGTAVGD   63 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~P-~I~W~~~dG~~i~~   63 (74)
                      +|.+...++....+..|..+.|.|.|.|. |+| +|+|++ ||.++..
T Consensus       120 ~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~-~g~~~~~  166 (238)
T 1bec_A          120 PPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWV-NGKEVHS  166 (238)
T ss_dssp             CCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEE-TTEEECT
T ss_pred             CCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEE-CCEECCC
Confidence            45554443443334467789999999997 766 999997 8887753

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=98.02  E-value=2.9e-05  Score=58.47  Aligned_cols=49  Identities=22%  Similarity=0.424  Sum_probs=38.4

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG   66 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~   66 (74)
                      ..+|.+...+.. ..+..|+.+.|.|.|.|+|.|+|+|.+ ||..+.....
T Consensus       427 ~~~p~i~~~~~~-~~v~~G~~v~L~C~~~g~p~p~v~W~~-~g~~l~~~~~  475 (816)
T 3dmk_A          427 FDPPVIRQAFQE-ETMEPGPSVFLKCVAGGNPTPEISWEL-DGKKIANNDR  475 (816)
T ss_dssp             SCCCEEEEECCC-EEECSSSCEEEEEEEECSSCCEEEEEE-TTEECCSCTT
T ss_pred             cCCCceEecCcc-eEEcCCCCEEEEEEEecCCCCEEEEEE-CCEECCCCCC
Confidence            457788777544 456788889999999999999999997 7887755443

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=98.02  E-value=7e-07  Score=66.15  Aligned_cols=47  Identities=28%  Similarity=0.549  Sum_probs=0.0

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      ..+|.|...+.+ ..+..|+.+.|.|.|.|+|.|+|+|++ ||.++...
T Consensus       664 ~~~P~~~~~~~~-~~v~~g~~~~l~C~~~g~P~p~v~W~k-~g~~l~~~  710 (772)
T 3v2a_R          664 RVAPTITGNLEN-QTTSIGESIEVSCTASGNPPPQIMWFK-DNETLVED  710 (772)
T ss_dssp             -------------------------------------------------
T ss_pred             cCCCEeecCCCc-eEEeCCCCEEEEEEeCccCCCeEEEEE-CCeECcCC
Confidence            457888877544 456778889999999999999999996 77776544

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.02  E-value=5.9e-06  Score=51.24  Aligned_cols=34  Identities=24%  Similarity=0.491  Sum_probs=26.6

Q ss_pred             CcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         27 NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        27 ~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      .......+..+.+.|.|.|.|+|+|+|++ ||..+
T Consensus       126 ~~~~~~~~~~~~~~c~~~g~p~p~i~W~~-~~~~~  159 (218)
T 4frw_A          126 PALEEGQGLTLAASCTAEGSPAPSVTWDT-EVKGT  159 (218)
T ss_dssp             SCEETTCCSEEEEEEEEEEBSCCEEEEEE-SSCCE
T ss_pred             eeeeeeeccccceeeeccCCcCceEEEEE-CCccc
Confidence            34445567779999999999999999997 45444

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.02  E-value=8.7e-06  Score=51.73  Aligned_cols=43  Identities=21%  Similarity=0.557  Sum_probs=30.9

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEE-cccCCCeEEEEeCCCeeec
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTA-RGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A-~G~P~P~I~W~~~dG~~i~   62 (74)
                      .|.+...|...  +..|..+.|.|.| .|.|.|+|+|.+++|..+.
T Consensus       111 ~p~i~~~~~~~--v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~  154 (222)
T 4i0k_A          111 KPSMTLEPNKD--LRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLT  154 (222)
T ss_dssp             CCEEECCC-------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCC
T ss_pred             CCcEEeCCCce--ecCCceEEEEEecccccCCCeEEEEcCCCccCC
Confidence            46666665433  4567789999999 9999999999986777654

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=98.00  E-value=7.2e-06  Score=55.35  Aligned_cols=37  Identities=24%  Similarity=0.498  Sum_probs=30.6

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEccc-CCCeEEEEeCC
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARGS-PNPEIIWIRSD   57 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~P~I~W~~~d   57 (74)
                      .|++ +|..+.+..|+.+.|.|.+.|. |.|+|+|++++
T Consensus         5 ~v~~-~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~   42 (327)
T 2wng_A            5 QVIQ-PDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGA   42 (327)
T ss_dssp             CEEC-CCSEEEEETTSCEEECCEESCCCSCCCEEEEESC
T ss_pred             EEEc-CCCceEEecCCcEEEEEEccCcCCCceEEEEECC
Confidence            3444 4677778899999999999998 99999999843

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.00  E-value=2.7e-06  Score=54.79  Aligned_cols=41  Identities=10%  Similarity=0.310  Sum_probs=25.7

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD   57 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~d   57 (74)
                      ...+.+++.| ..+.+..|++++|.|.+.|.|.|.|+|++.+
T Consensus        21 ~~~~~v~~~p-~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~   61 (233)
T 3bqu_C           21 GAETTVTQSP-ASLSMSIGEKVTIRCITSTDIDDDMNWYQQK   61 (233)
T ss_dssp             --CCCEEEEC-SBC-------CCEEEEEEEEESSCEEEEEEC
T ss_pred             ccceeEEEcC-CeEEEecCCCEEEEEecCCcCCCeEEEEEEC
Confidence            3455666664 4445678889999999999999999998754

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=97.99  E-value=1.1e-05  Score=51.20  Aligned_cols=31  Identities=19%  Similarity=0.434  Sum_probs=27.4

Q ss_pred             CCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         26 PNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      |..+.+..|+.++|.|.+.|.|.|.|+|++.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~   37 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQ   37 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEE
Confidence            4566788899999999999999999999874

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=97.99  E-value=1.1e-06  Score=57.87  Aligned_cols=33  Identities=21%  Similarity=0.493  Sum_probs=27.6

Q ss_pred             CCcEEecCCCCeEEEEEEcccCCCeEEEEeCCC
Q psy11558         26 PNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG   58 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG   58 (74)
                      +....+.+|+.+.|.|.|.|+|.|+|+|+++++
T Consensus       192 p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~  224 (265)
T 2oz4_A          192 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT  224 (265)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTT
T ss_pred             CCccEEcCCCeEEEEeECccCCCCeEEEEECCc
Confidence            345566788889999999999999999998544

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=97.99  E-value=5.9e-06  Score=52.37  Aligned_cols=45  Identities=24%  Similarity=0.374  Sum_probs=32.8

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccC-C-CeEEEEeCCCeeecC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSP-N-PEIIWIRSDGTAVGD   63 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P-~-P~I~W~~~dG~~i~~   63 (74)
                      .+|.+...|++.. ...|..+.|.|.|.|.| + ++|+|.+ ||.++..
T Consensus       113 ~~P~i~~~~~~~~-~~~g~~v~l~C~~~g~~p~~~~v~W~k-~g~~l~~  159 (213)
T 3mj8_L          113 AAPSVTLFPPSSE-ELKTNQATLVCMINGFYPADVAVTWEA-DGTPITQ  159 (213)
T ss_dssp             BCCEEEEECCCHH-HHTTTEEEEEEEEEEEBSSCCEEEEEE-TTEEECT
T ss_pred             CCCeEEccCCCcc-cccCCcEEEEEEeeceeCCCeEEEEEc-CCcccCC
Confidence            5666666655543 23677899999999974 4 3999997 8888754

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=97.99  E-value=1.2e-05  Score=50.87  Aligned_cols=42  Identities=14%  Similarity=0.249  Sum_probs=33.8

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      ..+|.|..+|..  .+.+|+.++|.|.|.|.|. .++|.+ ||..+
T Consensus         3 ~~~P~i~~~p~~--~v~~G~~v~L~C~~~~~~~-~~~W~k-~g~~~   44 (198)
T 1ugn_A            3 LPKPTLWAEPGS--VITQGSPVTLRCQGGQETQ-EYRLYR-EKKTA   44 (198)
T ss_dssp             CCCCEEEEESCS--EEETTCCEEEEEECCTTCC-CEEEEE-SSSCC
T ss_pred             CCCCeEeccCCC--cccCCCcEEEEEEecCCCc-EEEEEE-CCccc
Confidence            467999988754  4668889999999999886 799997 66655

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=97.99  E-value=7.1e-06  Score=52.04  Aligned_cols=45  Identities=18%  Similarity=0.304  Sum_probs=33.3

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEccc--CCCeEEEEeCCCeeecC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGS--PNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~--P~P~I~W~~~dG~~i~~   63 (74)
                      .+|.+...|+.... ..|..+.|.|.|.|.  |.|+|+|.+ ||.++..
T Consensus       110 ~~P~v~~~~~~~~~-~~g~~v~l~C~~~g~~p~~~~v~W~k-~g~~l~~  156 (211)
T 3tv3_L          110 AAPSVTLFPPSSEE-LQANKATLVCLISDFYPGAVTVAWKA-DSSPVKA  156 (211)
T ss_dssp             BCCEEEEECCCHHH-HHTTCEEEEEEEEEEBSSCCEEEEEE-TTEEECT
T ss_pred             cCCeeEecCCchhh-hcCCCeEEEEEeeeecCCCeEEEEEE-CCeecCC
Confidence            56777776655432 257789999999996  468999996 8887753

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=97.98  E-value=5.3e-06  Score=51.67  Aligned_cols=46  Identities=13%  Similarity=0.296  Sum_probs=32.9

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCC-eEEEEeCCCeeecC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSDGTAVGD   63 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P-~I~W~~~dG~~i~~   63 (74)
                      ..+|.+...|... .+..|+.+.|.|.+.|.|.| .|+|++ ||..+..
T Consensus         2 ~~~P~i~~~p~~~-~v~~G~~v~L~C~~~~~~~~~~i~W~~-~~~~~~~   48 (176)
T 1f2q_A            2 PQKPKVSLNPPWN-RIFKGENVTLTCNGNNFFEVSSTKWFH-NGSLSEE   48 (176)
T ss_dssp             --CCCCEEESSCS-EEETTCCEEEECCTTCC----CCEEEE-TTEECSC
T ss_pred             CCCCEEEcCCCCc-ceecCCcEEEEEeCCCCCCcceEEEEE-CCeECCC
Confidence            3578888886663 46678889999999999997 699996 7776643

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=97.98  E-value=9.1e-06  Score=48.00  Aligned_cols=35  Identities=14%  Similarity=0.403  Sum_probs=28.9

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD   57 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~d   57 (74)
                      ++. |..+...+|++++|.|.++|.|.+.|.|++.+
T Consensus         5 ~q~-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~   39 (108)
T 1qfw_M            5 TQS-PKSMSMSVGERVTLSCKASETVDSFVSWYQQK   39 (108)
T ss_dssp             EEE-CSCEECCTTCCEEEEEEESSCCCSCEEEEEEC
T ss_pred             EEe-CCeEEEcCCCCEEEEeeeCCCCCcEEEEEEEC
Confidence            444 55566788999999999999999999999753

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=97.98  E-value=1.2e-05  Score=52.38  Aligned_cols=37  Identities=14%  Similarity=0.297  Sum_probs=30.6

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      ..+++. |..+.+.+|++++|.|.+.|.|.|.|.|++.
T Consensus         5 ~~v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~   41 (250)
T 3esu_F            5 IVLIQS-TSSLSASLGDRVTISCRASQDIRNYLNWYQQ   41 (250)
T ss_dssp             CCEECS-CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             eeEEec-CCEEEeeCCCcEEEEEEecccCCceEEEEEE
Confidence            344444 5666788999999999999999999999984

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=97.97  E-value=2e-06  Score=60.35  Aligned_cols=42  Identities=21%  Similarity=0.474  Sum_probs=33.1

Q ss_pred             ccceEEEcC-CCcEEecCCCCeEEEEEEcccCCCeEEEEeCCC
Q psy11558         17 LGPIFIKEP-PNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG   58 (74)
Q Consensus        17 ~~P~fv~~P-p~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG   58 (74)
                      .+|.+...+ |..+.+.+|..+.|.|.|.|+|.|+|+|++++.
T Consensus       367 ~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~  409 (450)
T 1z7z_I          367 YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT  409 (450)
T ss_dssp             EEEECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEETTT
T ss_pred             cCCceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEECCc
Confidence            456666653 356667788899999999999999999997443

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=97.97  E-value=7.1e-06  Score=52.15  Aligned_cols=44  Identities=32%  Similarity=0.497  Sum_probs=31.0

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeecC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVGD   63 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~~   63 (74)
                      +|.+...++.... ..|+.+.|.|.|.| .|+| +|+|++ ||.++..
T Consensus       111 ~P~v~~~~~~~~~-~~g~~v~l~C~~~g~~p~~~~v~W~k-~g~~~~~  156 (210)
T 1lk3_L          111 APTVSIFPPSTEQ-LATGGASVVCLMNNFYPRDISVKWKI-DGTERRD  156 (210)
T ss_dssp             CCEEEEECCCHHH-HTTTEEEEEEEEEEEBSSCCEEEEEE-TTEECCT
T ss_pred             CCeEEEECCchhh-ccCCcEEEEEEEEeEeCCceEEEEEe-CCccCCC
Confidence            5666665554332 35667999999998 4554 899997 7887653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.97  E-value=6.2e-06  Score=57.87  Aligned_cols=36  Identities=8%  Similarity=0.232  Sum_probs=29.9

Q ss_pred             CCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         26 PNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      +..+.+..|+.++|.|.|.| |.|+|+|.++++..+.
T Consensus       253 ~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~  288 (361)
T 2xot_A          253 ESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVL  288 (361)
T ss_dssp             CCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCC
T ss_pred             ccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEe
Confidence            45667788999999999999 9999999986665443

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=97.97  E-value=1.6e-05  Score=49.99  Aligned_cols=30  Identities=20%  Similarity=0.689  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEEc-ccCCCeEEEEeCCCeeecC
Q psy11558         33 NTTGAQVECTAR-GSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        33 ~g~~v~L~C~A~-G~P~P~I~W~~~dG~~i~~   63 (74)
                      .|..+.|.|.|. |.|.|+|+|++ ||..+..
T Consensus       120 ~g~~~~l~C~~~~g~P~p~i~W~k-~g~~l~~  150 (201)
T 1dr9_A          120 TSNIRRIICSTSGGFPEPHLSWLE-NGEELNA  150 (201)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEE-SSCEECC
T ss_pred             CCCeEEEEEecCCccCCCEEEEEE-CCEECcc
Confidence            455689999995 99999999997 6877653

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=97.97  E-value=9.2e-06  Score=47.89  Aligned_cols=36  Identities=8%  Similarity=0.410  Sum_probs=29.6

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD   57 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~d   57 (74)
                      +++. |..+...+|++++|.|.+.|.|.+.|.|++.+
T Consensus         4 v~q~-p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~   39 (107)
T 1i8k_A            4 LTQS-PASLSVATGEKVTIRCMTSTDIDDDMNWYQQK   39 (107)
T ss_dssp             EEEE-CSEEECCTTCCEEEEEEESSCCTTCEEEEEEC
T ss_pred             eEeC-CCeEEecCCCCEEEEEEECCCCCCcEEEEEEC
Confidence            3444 55667888999999999999999999999853

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=97.97  E-value=5.3e-05  Score=47.46  Aligned_cols=42  Identities=10%  Similarity=0.268  Sum_probs=31.3

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      .|.+...+..   ...|..+.|.|.|.|.| |+|+|.+ ||..+...
T Consensus       112 ~p~i~~~~~~---~~~g~~v~l~C~~~~~p-p~i~W~~-~g~~l~~~  153 (208)
T 3r4d_A          112 QPFLQVTNTT---VKELDSVTLTCLSNDIG-ANIQWLF-NSQSLQLT  153 (208)
T ss_dssp             CCEEEESCSS---CCTTCCEEEEEECSCTT-CEEEEEE-TTEECCCC
T ss_pred             CCEEecCCce---EeeCCCEEEEEECCCCC-CceEEEE-CCEeCCCC
Confidence            3555555333   45777899999999977 8999997 78777543

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=97.96  E-value=9.5e-06  Score=52.55  Aligned_cols=47  Identities=21%  Similarity=0.412  Sum_probs=31.9

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEccc-CC-CeEEEEeCCCeeecC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGS-PN-PEIIWIRSDGTAVGD   63 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~-P~I~W~~~dG~~i~~   63 (74)
                      ..+|.+...++....+..|..+.|.|.|.|. |+ ++|+|.+ ||..+..
T Consensus       104 ~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k-~g~~l~~  152 (214)
T 1ow0_A          104 TFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQ-GSQELPR  152 (214)
T ss_dssp             CCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEE-TTEECCG
T ss_pred             CCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEE-CCEECCC
Confidence            3566655444443223466679999999996 54 4999997 7877643

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=97.96  E-value=1.1e-05  Score=51.20  Aligned_cols=31  Identities=10%  Similarity=0.213  Sum_probs=25.9

Q ss_pred             CCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         34 TTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      ++.+.|.|.|.|.|.|+|+|++ ||.++....
T Consensus       110 ~~~v~L~C~~~g~p~p~i~W~~-~g~~l~~~~  140 (176)
T 1hng_A          110 CSNATLTCEVLEGTDVELKLYQ-GKEHLRSLR  140 (176)
T ss_dssp             TTTTEEEEECSSCSSCEEEEEE-TTEEEEEES
T ss_pred             CCcEEEEEEecCCCCcEEEEEE-CCEECCCCC
Confidence            4459999999999999999997 888875443

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=97.95  E-value=7.2e-06  Score=51.98  Aligned_cols=40  Identities=15%  Similarity=0.263  Sum_probs=22.1

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      +|.+...| .. .+.+|+.++|.|.|.|.| |+++|.+ ||..+
T Consensus       100 ~p~i~~~~-~~-~v~~G~~v~L~C~~~~~p-~~~~W~k-~g~~~  139 (196)
T 2d3v_A          100 KPTLSALP-SP-VVTSGENVTLQCGSRLRF-DRFILTE-EGDHK  139 (196)
T ss_dssp             CCEEEC-------------CEEEEEESSCC-SEEEEEE-C---C
T ss_pred             CCeEEccC-Cc-cccCCCcEEEEEEcCCCC-CEEEEEc-cCCcc
Confidence            56665553 32 356788899999999999 9999997 66554

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=97.95  E-value=5.7e-06  Score=52.89  Aligned_cols=41  Identities=17%  Similarity=0.430  Sum_probs=29.6

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCee
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTA   60 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~   60 (74)
                      .|.+...++.. ....|..+.|.|.|.| .|.| +|+|.+ ||..
T Consensus       124 ~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~~-~g~~  166 (219)
T 1c1e_H          124 PPSVYPLAPGS-AAQTNSMVTLGCLVKGYFPEPVTVTWNS-GSLS  166 (219)
T ss_dssp             CCEEEEECCCS-SSCCSSEEEEEEEEEEEBSSCCEEEEGG-GTBC
T ss_pred             CCeEEEecCcc-ccccCCeEEEEEEcccccCCCeEEEEEe-CCcc
Confidence            35555444333 2346778999999999 9999 999986 6665

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=97.95  E-value=7.9e-06  Score=52.53  Aligned_cols=37  Identities=11%  Similarity=0.403  Sum_probs=32.0

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcc---cCCCeEEEEeCC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARG---SPNPEIIWIRSD   57 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G---~P~P~I~W~~~d   57 (74)
                      .+..|+..+.+..|+.+.|.|.+.|   .|.|.|+|++++
T Consensus         4 ~v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~   43 (250)
T 2fbo_J            4 TVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGA   43 (250)
T ss_dssp             EEECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEE
T ss_pred             EEEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCC
Confidence            4566777888889999999999999   999999999854

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=97.94  E-value=1.9e-05  Score=51.31  Aligned_cols=38  Identities=18%  Similarity=0.434  Sum_probs=30.4

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      .|.+.+. +..+.+.+|++++|.|.+.|.|.|.|+|++.
T Consensus       135 ~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~  172 (247)
T 2ghw_B          135 ETTLTQS-PATLSLSPGERATLSCRASQSVRSNLAWYQQ  172 (247)
T ss_dssp             CCCEEEE-CSEEEECTTSCEEEEEEESSCCTTCEEEEEE
T ss_pred             ceEEEcc-CCEEEecCCCcEEEEEEeCCCccceEEEEEE
Confidence            4455555 4555677888999999999999999999973

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=97.94  E-value=1.4e-05  Score=52.50  Aligned_cols=41  Identities=12%  Similarity=0.260  Sum_probs=31.7

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccC-----CCeEEEEeCC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSP-----NPEIIWIRSD   57 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P-----~P~I~W~~~d   57 (74)
                      ...+.+++. |..+.+..|++++|.|.+.|.|     .|.|+|++.+
T Consensus        32 ~~~~~v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~   77 (252)
T 3bkj_L           32 SSDVLMTQT-PLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQR   77 (252)
T ss_dssp             --CCCEEEE-CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEEC
T ss_pred             ccccEEEeC-CceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEEC
Confidence            345566666 4566678899999999999999     7999999854

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=97.94  E-value=1.1e-05  Score=52.07  Aligned_cols=37  Identities=14%  Similarity=0.215  Sum_probs=29.9

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD   57 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~d   57 (74)
                      .+++.| ..+.+..|+.++|.|.+.|.|.|.|+|++.+
T Consensus       129 ~v~~~p-~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~  165 (238)
T 2p1y_A          129 QVRQSP-QSLTVWEGETAILNCSYENSAFDYFPWYQQF  165 (238)
T ss_dssp             CCEEEC-SEEEEETTSCEEEEEECCCTTCCEEEEEEEC
T ss_pred             eEEccC-ceEEEeCCCeEEEEEEEecCCCCcEEEEEEC
Confidence            555554 4455778889999999999999999999854

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=97.93  E-value=1e-05  Score=51.28  Aligned_cols=45  Identities=27%  Similarity=0.356  Sum_probs=31.5

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCC--eEEEEeCCCeeecC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNP--EIIWIRSDGTAVGD   63 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P--~I~W~~~dG~~i~~   63 (74)
                      .+|.+...++.... ..|+.++|.|.|.|.|+|  +|+|.+ ||.++..
T Consensus       114 ~~P~v~~~~~~~~~-~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~l~~  160 (212)
T 1q0x_L          114 SSPTVTLFPPSSEE-LSTAKATLVCTITDFYPGVVTVDWKV-DGTPVTA  160 (212)
T ss_dssp             BCCEEEEECCCHHH-HTTTEEEEEEEEEEEBSSCCEEEEEE-TTEEECT
T ss_pred             CCCeeEEeCCCHHH-ccCCcEEEEEEEEEEeCCCeEEEEEE-CCEeCCC
Confidence            45666665554432 346679999999996544  899997 7887753

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.93  E-value=5.7e-06  Score=59.29  Aligned_cols=47  Identities=19%  Similarity=0.552  Sum_probs=38.3

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      .+.+|.++..| ..+.+.+|+.++|.|.|.  |.|+|+|.+++|..+...
T Consensus       349 ~C~~P~i~~~~-~~~~v~~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~  395 (452)
T 3zyi_A          349 QCSAPFIMDAP-RDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHA  395 (452)
T ss_dssp             CCCCCCCSBCC-CCEECCTTSCCEECCBCC--TTSEEEEECTTSCEECSS
T ss_pred             cccCccccccc-ccccccCCCEEEEEEeCC--CCCcEEEEeCCCcEeccC
Confidence            46678888764 556788999999999999  999999998888876543

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=97.93  E-value=7.8e-06  Score=51.78  Aligned_cols=45  Identities=24%  Similarity=0.463  Sum_probs=31.8

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeecCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVGDV   64 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~~~   64 (74)
                      +|.+...++..... .|..+.|.|.|.| .|.| +|+|++ ||.++...
T Consensus       112 ~p~v~~~~~~~~~~-~g~~~~l~C~~~g~~p~~~~v~W~k-~g~~~~~~  158 (213)
T 3d9a_L          112 APTVSIFPPSSEQL-TSGGASVVCFLNNFYPKDINVKWKI-DGSERQNG  158 (213)
T ss_dssp             CCEEEEECCCHHHH-HTTEEEEEEEEEEEBSSCCEEEEEE-TTEEECTT
T ss_pred             CceeEeECCChhhc-CCCcEEEEEEEeeecCCceEEEEEc-CCCcCcce
Confidence            56666554443323 4567999999998 6776 899997 78877543

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=97.93  E-value=1.1e-05  Score=59.81  Aligned_cols=47  Identities=4%  Similarity=-0.012  Sum_probs=34.3

Q ss_pred             ccceEEEcCC-CcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         17 LGPIFIKEPP-NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        17 ~~P~fv~~Pp-~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      .+|.+...|. ..+.+..|+.+.|.|.|.|+|.|+|+|++ ||.++...
T Consensus       323 ~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k-~g~~l~~~  370 (527)
T 3qs9_E          323 EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF-SRKSFPCE  370 (527)
T ss_dssp             --CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEE-TTEEEECB
T ss_pred             ccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEE-CCEECcCC
Confidence            3455554443 23556678889999999999999999996 78887543

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=97.93  E-value=1.5e-05  Score=49.07  Aligned_cols=36  Identities=6%  Similarity=0.148  Sum_probs=29.1

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD   57 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~d   57 (74)
                      |... +..+.+..|++++|.|.+.|.|.|.|.|++.+
T Consensus        41 ~~~~-p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~   76 (145)
T 1z9m_A           41 SQPW-TSDETVVAGGTVVLKCQVKDHEDSSLQWSNPA   76 (145)
T ss_dssp             TCCB-CCCEEEETTSCEEEEEECSCCTTCCEEEECTT
T ss_pred             eecC-CceEEEEcCCCEEEEEEEcCCCCcEEEEECCC
Confidence            3344 55667788999999999999999999999643

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=97.93  E-value=1.2e-05  Score=50.96  Aligned_cols=46  Identities=22%  Similarity=0.288  Sum_probs=32.9

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCC--eEEEEeCCCeeecC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNP--EIIWIRSDGTAVGD   63 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P--~I~W~~~dG~~i~~   63 (74)
                      ..+|.+...|+... ...|..+.|.|.|.|.|+|  +|+|.+ ||.++..
T Consensus       110 ~~~p~v~~~~~~~~-~~~~~~v~l~C~~~g~~p~~~~v~W~k-~g~~l~~  157 (213)
T 3r06_A          110 DAKPTVSIFPPSSE-QLGTGSATLVCFVNNFYPKDINVKWKV-DGSEKRD  157 (213)
T ss_dssp             CBCCEEEEECCCHH-HHTTTEEEEEEEEEEEBSSCEEEEEEE-TTEEECT
T ss_pred             CCCceeeeeCCCce-ecCCCCcEEEEEEeeecCCceEEEEEE-CCcccCC
Confidence            45666766655543 2345569999999998754  999997 7887753

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=97.92  E-value=7.4e-06  Score=52.27  Aligned_cols=45  Identities=20%  Similarity=0.383  Sum_probs=30.9

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeecC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVGD   63 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~~   63 (74)
                      .+|.+...++..... .|..++|.|.|.| .|.| +|+|++ ||.++..
T Consensus       113 ~~P~v~~~~~~~~~~-~g~~v~L~C~~~g~~P~~~~v~W~k-~g~~~~~  159 (216)
T 2xzc_L          113 AAPSVFIFPPSDEQL-KSGTASVVCLLNNFYPREAKVQWKV-DNALQSG  159 (216)
T ss_dssp             BCCEEEEECCCHHHH-HTTEEEEEEEEEEEBSSCCEEEEEE-TTEECCS
T ss_pred             CCCceEEeCCChhhc-cCCcEEEEEEEEeEcCCceEEEEEE-CCeecCC
Confidence            456666554443223 3557999999999 5665 999997 7877643

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=97.92  E-value=1.4e-05  Score=48.48  Aligned_cols=36  Identities=14%  Similarity=0.324  Sum_probs=29.7

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD   57 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~d   57 (74)
                      +++. |..+...+|++++|.|.++|.|.+.|.|++.+
T Consensus         4 v~q~-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~   39 (120)
T 1mqk_L            4 LTQT-PVSLSASVGETVTITCRASENIYSYLAWYQQK   39 (120)
T ss_dssp             EEEE-CSEEEECTTCCEEEEEEESSCCTTCEEEEEEC
T ss_pred             eEec-CCeEEEcCCCcEEEEEEeCCCCCceEEEEEEC
Confidence            3444 55667889999999999999999999999853

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=97.92  E-value=1.3e-05  Score=51.54  Aligned_cols=45  Identities=16%  Similarity=0.375  Sum_probs=31.6

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEccc-CCC-eEEEEeCCCeeec
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGS-PNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~P-~I~W~~~dG~~i~   62 (74)
                      ..+|.+...|+.... ..|..+.|.|.|.|. |+| +|+|++ ||.++.
T Consensus       107 ~~~P~v~~~~~~~~~-~~g~~~~L~C~~~g~~P~~~~v~W~k-~g~~l~  153 (207)
T 2vol_A          107 PKAPQVYTLPPPKEQ-MAKDKVSLTCMITDFFPEDITVEWES-NGQPAE  153 (207)
T ss_dssp             CBCCEEEEECCCTGG-GSSSEEEEEEEEEEEBSSCCEEEEEE-TTEECS
T ss_pred             CcCCeEEEeCCCHHH-hcCCceEEEEEEeeEECCCCEEEEEE-CCEecc
Confidence            456766665554432 246779999999995 553 999997 787764

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=97.92  E-value=8.9e-06  Score=51.55  Aligned_cols=45  Identities=22%  Similarity=0.496  Sum_probs=31.7

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeecC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVGD   63 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~~   63 (74)
                      .+|.+...++..... .+..++|.|.|.| .|.| +|+|.+ ||.++..
T Consensus       120 ~~P~~~~~~~~~~~~-~~~~v~L~C~~~g~~p~~~~v~W~k-~g~~l~~  166 (218)
T 3s96_B          120 STPTLTVFPPSSEEL-KENKATLVCLISNFSPSGVTVAWKA-NGTPITQ  166 (218)
T ss_dssp             BCCEEEEECCCHHHH-HTTEEEEEEEEEEEBSSCCEEEEEE-TTEEC--
T ss_pred             CCceEEeeCCCcccc-cCCcEEEEEEECcccCCCeEEEEEE-CCEECcC
Confidence            556666655554333 3467999999999 6888 999997 8887754

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=97.92  E-value=2.9e-05  Score=50.42  Aligned_cols=32  Identities=16%  Similarity=0.452  Sum_probs=26.6

Q ss_pred             cCCCCeEEEEEEccc-CCC-eEEEEeCCCeeecC
Q psy11558         32 SNTTGAQVECTARGS-PNP-EIIWIRSDGTAVGD   63 (74)
Q Consensus        32 ~~g~~v~L~C~A~G~-P~P-~I~W~~~dG~~i~~   63 (74)
                      ..|..+.|.|.|.|. |.| +|+|.+.||..+..
T Consensus       139 ~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~  172 (223)
T 1dee_B          139 NPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISS  172 (223)
T ss_dssp             CSSSEEEEEEEEEEEBSSCCEEEEEETTSCBCSC
T ss_pred             CCCCcEEEEEEEEEEeCCCeEEEeEccCCCccce
Confidence            466779999999998 888 99999868877643

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=97.91  E-value=8.4e-06  Score=53.52  Aligned_cols=42  Identities=7%  Similarity=-0.005  Sum_probs=34.1

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      ..+|.|..+|..  .+..|++++|.|.|.| |.|.++|++ ||..+
T Consensus         7 ~~~P~i~~~p~~--~v~~G~~vtL~C~~~~-~~~~~~W~k-~g~~~   48 (218)
T 1uct_A            7 FPMPFISAKSSP--VIPLDGSVKIQCQAIR-EAYLTQLMI-IKNST   48 (218)
T ss_dssp             SCCCCEEESSCS--EEETTCCEEEEECCCT-TCSEEEEEE-EETTE
T ss_pred             CCCCEEEecCCC--ccCCCCCEEEEEEcCC-CCCEEEEEE-CCCcc
Confidence            568999999763  3567889999999999 899999997 55544

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=97.91  E-value=1.6e-05  Score=50.99  Aligned_cols=45  Identities=20%  Similarity=0.497  Sum_probs=30.0

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEccc-CC-CeEEEEeCCCeeec
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGS-PN-PEIIWIRSDGTAVG   62 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~-P~I~W~~~dG~~i~   62 (74)
                      ..+|.+...++....+.++ .+.|.|.|.|. |+ ++|+|.+ ||.++.
T Consensus       107 ~~~P~v~~~~~~~~~~~~~-~~~L~C~~~g~~P~~~~v~W~k-~g~~~~  153 (207)
T 1l6x_A          107 PREPQVYTLPPSRDELTKN-QVSLTCLVKGFYPSDIAVEWES-NGQPEN  153 (207)
T ss_dssp             CBCCEEEEECCCGGGGGSS-EEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             CcCCEEEEECCChHHhcCC-cEEEEEEEeCeECCCeEEEEEE-CCeecc
Confidence            3456655554443223344 59999999995 54 3999997 787764

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=97.91  E-value=1.5e-05  Score=55.87  Aligned_cols=44  Identities=11%  Similarity=0.196  Sum_probs=33.2

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCC---eEEEEeCCCeeec
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNP---EIIWIRSDGTAVG   62 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P---~I~W~~~dG~~i~   62 (74)
                      +|.+....+....+.+|+.+.|.|.+.|.|+|   +|+|++ ||.++.
T Consensus        85 ~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k-~g~~l~  131 (450)
T 1z7z_I           85 TPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLR-GEKELK  131 (450)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEE-TTEEEE
T ss_pred             CCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEee-CCEEee
Confidence            55555333444456788899999999999999   999997 787765

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=97.90  E-value=4e-06  Score=53.25  Aligned_cols=45  Identities=22%  Similarity=0.423  Sum_probs=31.5

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEccc-CC-CeEEEEeCCCeeecC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGS-PN-PEIIWIRSDGTAVGD   63 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~-P~I~W~~~dG~~i~~   63 (74)
                      .+|.+...++... ...|..+.|.|.|.|. |+ |+|+|.+ ||.++..
T Consensus       112 ~~p~v~~~~~~~~-~~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~~~~  158 (212)
T 1nfd_E          112 SSPKVTVFPPSPE-ELRTNKATLVCLVNDFYPGSATVTWKA-NGATIND  158 (212)
T ss_dssp             BCCEEECCCCCHH-HHHTTEECCCEEEEEEBSSCCEEEEEE-TTEEECS
T ss_pred             CCCEEEeeCCchH-hccCCceEEEEEEEeeECCccEEEEEE-CCeEcCC
Confidence            4455555444432 2346679999999998 55 8999997 7887753

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=97.90  E-value=1.4e-05  Score=59.29  Aligned_cols=38  Identities=11%  Similarity=0.164  Sum_probs=31.2

Q ss_pred             CCCcEEecCCCCeEEEEEEc-ccCCCeEEEEeCCCeeecC
Q psy11558         25 PPNRIDFSNTTGAQVECTAR-GSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        25 Pp~~v~~~~g~~v~L~C~A~-G~P~P~I~W~~~dG~~i~~   63 (74)
                      |+..+.+..|+.+.|.|.|. |+|.|+|+|.+ ||..+..
T Consensus       233 ~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k-~g~~l~~  271 (527)
T 3qs9_E          233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL-ENKALEE  271 (527)
T ss_dssp             SCCEEEECTTSCEEEEEEEEESSSCCCEEEEC-SSSCCCG
T ss_pred             CCCceEEeCCCeEEEEEEEccCCCCeEEEEEE-CCEECCC
Confidence            55667788899999999997 99999999996 6665543

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=97.90  E-value=6.4e-06  Score=53.47  Aligned_cols=46  Identities=28%  Similarity=0.515  Sum_probs=31.8

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeecC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVGD   63 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~~   63 (74)
                      ..|.+...++....+..|..+.|.|.|.| .|.| +|+|.+ ||.++..
T Consensus       120 ~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~-~g~~l~~  167 (240)
T 3q5y_A          120 TPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWV-NGKEVHS  167 (240)
T ss_dssp             BCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECT
T ss_pred             CCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEE-CCEECcC
Confidence            44544444344433445677999999999 7777 899996 8888753

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=97.90  E-value=1.2e-05  Score=54.22  Aligned_cols=43  Identities=14%  Similarity=0.336  Sum_probs=31.8

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCC--eEEEEeCCCeeec
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNP--EIIWIRSDGTAVG   62 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P--~I~W~~~dG~~i~   62 (74)
                      ..+|.+...+..   +.+|..+.|.|.|.|.|+|  +|+|++ ||.++.
T Consensus       220 ~~~P~i~~~~~~---~~~G~~v~l~C~~~g~~p~~~~v~W~k-~g~~l~  264 (327)
T 2wng_A          220 RVPPTLEVTQQP---VRAENQVNVTCQVRKFYPQRLQLTWLE-NGNVSR  264 (327)
T ss_dssp             CBCCEEEEEEEC---CSSTTCCEEEEEEEEEBSSCEEEEEEE-TTEEEE
T ss_pred             CCCCEEEEecCC---cCCCCcEEEEEEEccccCCCcEEEEEE-CCeEcc
Confidence            446666666443   4578889999999996544  899996 788764

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=97.90  E-value=1.5e-05  Score=48.32  Aligned_cols=37  Identities=16%  Similarity=0.363  Sum_probs=30.2

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD   57 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~d   57 (74)
                      .+++. |..+.+.+|++++|.|.+.|.|.+.|.|++.+
T Consensus         5 ~v~q~-p~~v~v~~G~~vtL~C~~~~~~~~~v~W~r~~   41 (119)
T 2e27_L            5 QMTQS-PSSLSASLGGKVTITCKANQDIKKKIAWYQHK   41 (119)
T ss_dssp             CEEEE-CSEEEEETTCCEEEEEEESSCCTTCEEEEEEC
T ss_pred             eeEec-CCeEEEeCCCCEEEEEEeCCCCCceEEEEEEC
Confidence            44555 45666788999999999999999999999853

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=97.89  E-value=1.3e-05  Score=56.71  Aligned_cols=45  Identities=18%  Similarity=0.434  Sum_probs=33.2

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCC--eEEEEeCCCeeec
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNP--EIIWIRSDGTAVG   62 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P--~I~W~~~dG~~i~   62 (74)
                      ..+|.+...|+......+|. +.|.|.|.|.|+|  +|+|++ ||.++.
T Consensus       353 ~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k-~g~~l~  399 (457)
T 1hzh_H          353 PREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWES-NGQPEN  399 (457)
T ss_dssp             CBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             CCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEE-CCEECc
Confidence            45677776666543345565 9999999998655  999997 788774

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=97.89  E-value=1.8e-05  Score=56.73  Aligned_cols=45  Identities=18%  Similarity=0.432  Sum_probs=32.8

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCC--eEEEEeCCCeeec
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNP--EIIWIRSDGTAVG   62 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P--~I~W~~~dG~~i~   62 (74)
                      ..+|.+...++......++ .+.|.|.|.|.|+|  +|+|++ ||.++.
T Consensus       423 ~~~P~v~~~~~~~~~~~~~-~~~l~C~~~g~~p~~~~v~W~k-~g~~~~  469 (523)
T 2rcj_C          423 PREPQVYTLPPSREEMTKN-QVSLTCLVKGFYPSDIAVEWES-NGQPEN  469 (523)
T ss_pred             CCCCEEEEeCCChHHccCC-ceEEEEEEEeeECCCCEEEEEE-CCEECC
Confidence            3456666655554334445 49999999999887  999997 788875

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=97.89  E-value=6.9e-06  Score=53.35  Aligned_cols=45  Identities=29%  Similarity=0.502  Sum_probs=30.3

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeecC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVGD   63 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~~   63 (74)
                      .|.+...++....+..|..++|.|.|.| .|.| +|+|++ ||.++..
T Consensus       123 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~-~g~~l~~  169 (245)
T 4ei6_B          123 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHS  169 (245)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECT
T ss_pred             CceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEE-CCEECCC
Confidence            4444333333333344677999999999 5556 899997 8888754

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=97.89  E-value=6.7e-06  Score=54.11  Aligned_cols=45  Identities=13%  Similarity=0.288  Sum_probs=31.5

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEccc-CC-C-eEEEEeCCCeee
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGS-PN-P-EIIWIRSDGTAV   61 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~-P-~I~W~~~dG~~i   61 (74)
                      ..+|.+...+|..+.+..|+.++|.|.|.|. |. | +|+|++ ||..+
T Consensus        10 ~~~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~-~g~~~   57 (231)
T 2w59_A           10 CSPIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTR-EKSGN   57 (231)
T ss_dssp             --CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEEC-SSSSC
T ss_pred             CCCCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEc-CCeec
Confidence            3455544333555556688889999999995 75 6 999995 77766

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=97.88  E-value=7.9e-06  Score=50.94  Aligned_cols=33  Identities=27%  Similarity=0.581  Sum_probs=27.4

Q ss_pred             EecCCCCeEEEEEE-cccCCCeEEEEeCCCeeecC
Q psy11558         30 DFSNTTGAQVECTA-RGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        30 ~~~~g~~v~L~C~A-~G~P~P~I~W~~~dG~~i~~   63 (74)
                      .+..|..+.|.|.| .|+|.|+|+|.+ ||..+..
T Consensus       118 ~~~~g~~~~l~C~~~~~~p~~~v~W~~-~~~~~~~  151 (209)
T 1nbq_A          118 SATIGNRAVLTCSEQDGSPPSEYTWFK-DGIVMPT  151 (209)
T ss_dssp             EEETTSCEEECCCCCSCBSCCEEEEEE-TTCCCCS
T ss_pred             ceecCCEEEEEEeCCCCCCCceeEEEE-CCeeCCC
Confidence            35678889999998 999999999997 6766654

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=97.88  E-value=2.1e-05  Score=51.56  Aligned_cols=37  Identities=11%  Similarity=0.288  Sum_probs=30.4

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD   57 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~d   57 (74)
                      .+++. |..+.+.+|++++|.|.+.|.|.|.|.|++.+
T Consensus         3 ~v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~   39 (242)
T 2znx_A            3 VLTQS-PATLSVTPGNSVSLSCRASQSIGNNLHXYQQK   39 (242)
T ss_dssp             CEEEE-CSEEEECTTCCEEEEEEESSCCTTCEEEEEEC
T ss_pred             cEEEc-CCeEEEcCCCcEEEEEEeCCCCCceEEEEEeC
Confidence            45666 45566788999999999999999999999753

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=97.88  E-value=2.8e-05  Score=51.45  Aligned_cols=36  Identities=14%  Similarity=0.345  Sum_probs=29.4

Q ss_pred             cEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         28 RIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        28 ~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      .+....|..+.|.|.|.|.|.|+|+|.+ ||..+...
T Consensus       113 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~-~~~~~~~~  148 (305)
T 2nzi_A          113 AVHALRGEVVSIKIPFSGKPDPVITWQK-GQDLIDNN  148 (305)
T ss_dssp             CEEEETTCCEEEEEEEEEESCCEEEEEE-SSSBCCSS
T ss_pred             cEEecCCCEEEEEEEECCCCCCEEEEEE-CCEECCCC
Confidence            4456678889999999999999999997 67666543

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=97.88  E-value=1.8e-05  Score=50.42  Aligned_cols=42  Identities=12%  Similarity=0.155  Sum_probs=32.7

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      ..+|.+...|. . .+.+|++++|.|.|.+ |.|.++|++ ||..+
T Consensus         6 ~~~P~i~~~p~-~-~v~~G~~v~L~C~~~~-~~~~~~w~k-~g~~~   47 (201)
T 1nkr_A            6 HRKPSLLAHPG-P-LVKSEETVILQCWSDV-MFEHFLLHR-EGMFN   47 (201)
T ss_dssp             -CCCEEEEESC-S-EEETTCCEEEEEEESS-CCSEEEEEE-ESSSC
T ss_pred             CCCCeEEEEcC-C-ccCCCCcEEEEEeccC-CCCEEEEEE-CCCcC
Confidence            46789988875 3 3567888999999986 899999997 56543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.88  E-value=1.4e-05  Score=55.10  Aligned_cols=32  Identities=16%  Similarity=0.496  Sum_probs=27.1

Q ss_pred             CCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         33 NTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        33 ~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      +|+.+.|.|.|.|.|.|+|+|.+ ||..+....
T Consensus       260 ~g~~v~l~C~~~g~P~p~i~W~~-~g~~l~~~~  291 (347)
T 2ifg_A          260 EMHHWCIPFSVDGQPAPSLRWLF-NGSVLNETS  291 (347)
T ss_dssp             ESSSEEEEEEEEEESCCEEEEEE-TTEECCCCS
T ss_pred             cCceEEEEEEeeecCCCcEEEEe-CCEECCCCc
Confidence            46779999999999999999996 888876443

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=97.88  E-value=3.5e-05  Score=52.15  Aligned_cols=38  Identities=18%  Similarity=0.510  Sum_probs=30.3

Q ss_pred             cceEEEcCCCc-EEecCCCCeEEEEEEcccCCC--eEEEEeCC
Q psy11558         18 GPIFIKEPPNR-IDFSNTTGAQVECTARGSPNP--EIIWIRSD   57 (74)
Q Consensus        18 ~P~fv~~Pp~~-v~~~~g~~v~L~C~A~G~P~P--~I~W~~~d   57 (74)
                      .|..+. |+.. +.+..|++++|+|.| |.|.|  +|+|.+.|
T Consensus         6 ~~~~V~-pp~~~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~   46 (210)
T 1gsm_A            6 KPLQVE-PPEPVVAVALGASRQLTCRL-ACADRGASVQWRGLD   46 (210)
T ss_dssp             CSEEEE-SCCSEEEEETTCCEEEEEEE-CCSSTTCEEEEESST
T ss_pred             CCEEEe-CCCCceEEeCCCCEEEEEEC-CCCCCCcceEEeecc
Confidence            345555 5554 678889999999999 99999  99999755

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=97.87  E-value=9.5e-06  Score=52.21  Aligned_cols=34  Identities=26%  Similarity=0.657  Sum_probs=27.4

Q ss_pred             EEecCCCCeEEEEEEcc-cCCCeEEEEeCCCeeec
Q psy11558         29 IDFSNTTGAQVECTARG-SPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        29 v~~~~g~~v~L~C~A~G-~P~P~I~W~~~dG~~i~   62 (74)
                      .....|..+.|.|.|.| .|.|+|+|++++|..+.
T Consensus       128 ~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~  162 (226)
T 4f80_A          128 VKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIP  162 (226)
T ss_dssp             EEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCC
T ss_pred             eeeccCCceeeEEEeccCCCCCEEEEEECCceEcC
Confidence            34556778999999999 59999999987776543

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=97.87  E-value=2.1e-05  Score=48.90  Aligned_cols=39  Identities=21%  Similarity=0.391  Sum_probs=30.0

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCe---EEEEeCCCeee
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPE---IIWIRSDGTAV   61 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~---I~W~~~dG~~i   61 (74)
                      ++.|+ .+....|++|+|.|.+.|.|.|.   |+|++.++..+
T Consensus         5 V~vp~-~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~   46 (225)
T 4fmk_A            5 VRVLP-EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVV   46 (225)
T ss_dssp             EECCS-EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEE
T ss_pred             EEeCC-EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcce
Confidence            34544 46677888999999999999885   89998766543

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=97.87  E-value=5.4e-06  Score=54.80  Aligned_cols=45  Identities=27%  Similarity=0.396  Sum_probs=30.7

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCC--eEEEEeCCCeeecC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNP--EIIWIRSDGTAVGD   63 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P--~I~W~~~dG~~i~~   63 (74)
                      +|.+...++....+..|..++|.|.|.|.|+|  +|+|.+ ||.++..
T Consensus       145 ~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~-~g~~l~~  191 (268)
T 3pl6_D          145 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHS  191 (268)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-SSSEECT
T ss_pred             CCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEE-CCEECCC
Confidence            45433333333334456789999999997765  999997 7887753

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=97.87  E-value=1.6e-05  Score=49.25  Aligned_cols=33  Identities=21%  Similarity=0.497  Sum_probs=27.7

Q ss_pred             CCCcEEecCCCCeEEEEEEcccCCCe---EEEEeCC
Q psy11558         25 PPNRIDFSNTTGAQVECTARGSPNPE---IIWIRSD   57 (74)
Q Consensus        25 Pp~~v~~~~g~~v~L~C~A~G~P~P~---I~W~~~d   57 (74)
                      .|+.+.+..|++++|.|.+.|.|.|.   |+|++.+
T Consensus         5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~   40 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVD   40 (218)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEEC
T ss_pred             CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECC
Confidence            35677788999999999999999875   8999743

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=97.87  E-value=1.9e-05  Score=56.54  Aligned_cols=48  Identities=15%  Similarity=0.113  Sum_probs=36.5

Q ss_pred             ccceEEEcCC--CcEEecCCCCeEEEEEEcccCCCe-EEEEeCCCeeecCCC
Q psy11558         17 LGPIFIKEPP--NRIDFSNTTGAQVECTARGSPNPE-IIWIRSDGTAVGDVP   65 (74)
Q Consensus        17 ~~P~fv~~Pp--~~v~~~~g~~v~L~C~A~G~P~P~-I~W~~~dG~~i~~~~   65 (74)
                      .+|.+...|.  ..+.+..|+.+.|.|.|.|+|.|+ |+|++ ||.++....
T Consensus       309 ~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k-~g~~~~~~~  359 (524)
T 2ec8_A          309 DKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIY-MNRTFTDKW  359 (524)
T ss_dssp             SSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEES-SSCBCSSSB
T ss_pred             ccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEE-CCeeccCCc
Confidence            4566655543  356678888999999999999999 99996 677665443

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=97.86  E-value=6.3e-06  Score=54.64  Aligned_cols=45  Identities=29%  Similarity=0.502  Sum_probs=30.6

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeecC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVGD   63 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~~   63 (74)
                      +|.+...++.......|..++|.|.|.| .|.| +|+|++ ||.++..
T Consensus       148 ~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k-~g~~l~~  194 (270)
T 3qib_D          148 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHS  194 (270)
T ss_dssp             CCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECT
T ss_pred             CCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEE-CCEECCC
Confidence            3443333333322334677999999999 7878 899997 8888754

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=97.86  E-value=1.7e-05  Score=49.38  Aligned_cols=29  Identities=7%  Similarity=0.135  Sum_probs=24.7

Q ss_pred             EecCCCCeEEEEEEcccCCCeEEEEeCCC
Q psy11558         30 DFSNTTGAQVECTARGSPNPEIIWIRSDG   58 (74)
Q Consensus        30 ~~~~g~~v~L~C~A~G~P~P~I~W~~~dG   58 (74)
                      .+..|+.+.|.|.|.|.|.|+|+|.++++
T Consensus       108 ~v~~g~~~~l~C~~~~~p~~~v~W~~~~~  136 (184)
T 2ny1_B          108 HLLQGQSLTLTLESPPGSSPSVQCRSPRG  136 (184)
T ss_dssp             EEETTCCEEEEEECCTTCCCEEEEECTTS
T ss_pred             eeecCCCEEEEEEcCCCCCCEEEEEeCCC
Confidence            45678889999999999999999997443

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=97.86  E-value=1.5e-05  Score=54.05  Aligned_cols=46  Identities=20%  Similarity=0.425  Sum_probs=33.6

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEccc-CCC---eEEEEeCCCeeecC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGS-PNP---EIIWIRSDGTAVGD   63 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~P---~I~W~~~dG~~i~~   63 (74)
                      .|.....+|..+.+..|+.+.|.|.|.|. |.|   +|+|++++|..+..
T Consensus       112 ~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~  161 (323)
T 2wqr_A          112 GVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNH  161 (323)
T ss_dssp             GCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCC
T ss_pred             CCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCccccc
Confidence            44443444555556678889999999996 577   99999877776643

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=97.86  E-value=1.6e-05  Score=50.97  Aligned_cols=41  Identities=17%  Similarity=0.351  Sum_probs=29.5

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEccc-CCC-eEEEEeCCC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGS-PNP-EIIWIRSDG   58 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~P-~I~W~~~dG   58 (74)
                      ..|.+...++... ...|+.+.|.|.|.|. |.| +|+|.++++
T Consensus       124 ~~P~i~~~~~~~~-~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~  166 (220)
T 1pz5_B          124 TAPSVYPLVPGCS-DTSGSSVTLGCLVKGYFPEPVTVKWNYGAL  166 (220)
T ss_dssp             BCCEEEEECCCSC-CSCSSSEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred             CCCeEEEcccccc-cCCCCcEEEEEEEEEEeCCCeEEEEecCCc
Confidence            3455555444332 3467789999999998 999 999987544

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=97.85  E-value=1.9e-05  Score=57.95  Aligned_cols=36  Identities=17%  Similarity=0.409  Sum_probs=29.8

Q ss_pred             CcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         27 NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        27 ~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      ....+..|+.+.|.|.|.|+|.|+|+|++ ||.++..
T Consensus       389 ~~~~~~~g~~~~l~C~~~g~p~~~i~W~~-~g~~~~~  424 (642)
T 1e07_A          389 SYTYYRPGVNLSLSCHAASNPPAQYSWLI-DGNIQQH  424 (642)
T ss_pred             CceEecCCCcEEEEEEcCccCCCeEEEEE-CCEEcCC
Confidence            34456688889999999999999999996 7877653

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=97.85  E-value=1.1e-05  Score=51.70  Aligned_cols=42  Identities=17%  Similarity=0.415  Sum_probs=29.5

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEccc-CCC-eEEEEeCCCeee
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGS-PNP-EIIWIRSDGTAV   61 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~P-~I~W~~~dG~~i   61 (74)
                      .|.+...++... ...|+.+.|.|.|.|. |.| +|+|.+ ||..+
T Consensus       127 ~P~i~~~~~~~~-~~~g~~v~L~C~~~g~~P~p~~v~W~~-~g~~~  170 (222)
T 1q9r_B          127 PPSVYPLAPGSA-AQTNSMVTLGCLVKGYFPEPVTVTWNS-GSLSS  170 (222)
T ss_dssp             CCEEEEECCCSC-CCCSSEEEEEEEEEEEBSSCCEEEEGG-GTBCT
T ss_pred             CCeEEEcccccc-ccCCCcEEEEEEEccEECCCCEEEEec-CCeEc
Confidence            455444443332 3467789999999996 999 999986 67654

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=97.84  E-value=1.3e-05  Score=50.08  Aligned_cols=33  Identities=27%  Similarity=0.581  Sum_probs=26.7

Q ss_pred             EecCCCCeEEEEE-EcccCCCeEEEEeCCCe-eecC
Q psy11558         30 DFSNTTGAQVECT-ARGSPNPEIIWIRSDGT-AVGD   63 (74)
Q Consensus        30 ~~~~g~~v~L~C~-A~G~P~P~I~W~~~dG~-~i~~   63 (74)
                      .+..|+.+.|.|. +.|+|.|+|+|.+ ||. ++..
T Consensus       115 ~~~~g~~~~l~C~~~~~~p~~~i~W~~-~~~~~l~~  149 (212)
T 1f97_A          115 SVTIGNRAVLTCSEHDGSPPSEYSWFK-DGISMLTA  149 (212)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEE-TTEESBC-
T ss_pred             ccCCCCeEEEEEEcccCcCCCEEEEEe-CCcccccc
Confidence            3557788999999 8999999999997 666 6654

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.84  E-value=5.4e-05  Score=47.81  Aligned_cols=41  Identities=15%  Similarity=0.162  Sum_probs=32.8

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      .+|.|..+|..  .+..|++++|.|.|.|. .+.++|.+ ||..+
T Consensus         3 ~~P~i~~~p~~--~v~~G~~v~L~C~~~~~-~~~~~w~k-~g~~~   43 (188)
T 1oll_A            3 PKPFIWAEPHF--MVPKEKQVTICCQGNYG-AVEYQLHF-EGSLF   43 (188)
T ss_dssp             CCCEEEEESCS--EEETTCCEEEEEECCTT-CCEEEEEE-TTEEE
T ss_pred             CCCEEEeecCC--cCCCCCCEEEEEecCCC-CCEEEEEE-CCCcc
Confidence            57899999765  35678899999999984 58999996 67665

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=97.84  E-value=2.6e-05  Score=47.43  Aligned_cols=37  Identities=22%  Similarity=0.583  Sum_probs=30.2

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEccc-CCCeEEEEeCCC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGS-PNPEIIWIRSDG   58 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~-P~P~I~W~~~dG   58 (74)
                      +.++|..+.+..|++|+|.|.+.|. |.+.|.|++.+|
T Consensus         6 v~q~p~~~~v~~G~~vtL~C~~~~~~~~~~v~W~r~~~   43 (127)
T 2jju_A            6 VIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAG   43 (127)
T ss_dssp             EECCCSEEEEETTSCEEECCEESCCCSCCCEEEEECSS
T ss_pred             EEeeCCeEEEeCCCCEEEEEEEeCCCCCCEEEEEecCC
Confidence            3445667778899999999999987 789999998654

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=97.83  E-value=2.8e-05  Score=46.33  Aligned_cols=36  Identities=22%  Similarity=0.496  Sum_probs=29.3

Q ss_pred             EcCCCcEEecCCCCeEEEEEEccc-CCCeEEEEeCCC
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGS-PNPEIIWIRSDG   58 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~-P~P~I~W~~~dG   58 (74)
                      ..+|..+....|++|+|.|.+.+. |.+.|.|++.+|
T Consensus        11 ~q~p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~   47 (120)
T 2yz1_A           11 TQPEKSVSVAAGDSTVLNCTLTSLLPVGPIKWYRGVG   47 (120)
T ss_dssp             ECCSSEEEECTTCCEEECCEESCCCSCCCEEEEESSS
T ss_pred             ECCCceEEEeCCCCEEEEeEECCCCCCcEEEEEcCCC
Confidence            334566778899999999999987 788999998654

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=97.83  E-value=4.5e-05  Score=57.56  Aligned_cols=44  Identities=18%  Similarity=0.311  Sum_probs=35.2

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEE-EEe-CCCeeec
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEII-WIR-SDGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~-W~~-~dG~~i~   62 (74)
                      .+|.|. +|+ ++.+..|+.+.|.|.|.|+|.|.|+ |++ +||..+.
T Consensus       164 ~~p~~~-~~~-~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~  209 (731)
T 2v5y_A          164 RTPHFL-RIQ-NVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAP  209 (731)
T ss_dssp             SSCEEC-CCC-CEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEE
T ss_pred             cccccc-ccc-ceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCcccc
Confidence            568887 544 5667788899999999999999999 774 5787653

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=97.83  E-value=1.7e-05  Score=50.93  Aligned_cols=40  Identities=23%  Similarity=0.433  Sum_probs=28.5

Q ss_pred             eEEEcCCCcEE-ecCCCCeEEEEEEcccC----CCeEEEEeCCCeee
Q psy11558         20 IFIKEPPNRID-FSNTTGAQVECTARGSP----NPEIIWIRSDGTAV   61 (74)
Q Consensus        20 ~fv~~Pp~~v~-~~~g~~v~L~C~A~G~P----~P~I~W~~~dG~~i   61 (74)
                      +|+.. |+... +..|+++.|.|.|.|.|    .++|+|+++ |..+
T Consensus         4 v~~~~-P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~-~~~~   48 (207)
T 2vol_A            4 VFIFP-PKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVD-DVEV   48 (207)
T ss_dssp             EEEEC-CCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEET-TEEE
T ss_pred             EEEeC-cChhhhhccCCceEEEEEEeCcccCCCceEEEEEEC-Cccc
Confidence            45554 55322 56888999999999995    249999985 4554

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.83  E-value=2.1e-05  Score=48.71  Aligned_cols=34  Identities=12%  Similarity=0.284  Sum_probs=28.2

Q ss_pred             ecCCCCeEEEEEEcccCCC--eEEEEeCCCeeecCCC
Q psy11558         31 FSNTTGAQVECTARGSPNP--EIIWIRSDGTAVGDVP   65 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~P--~I~W~~~dG~~i~~~~   65 (74)
                      +.+|+.+.|.|.|.|.|.|  +++|++ ||..+....
T Consensus        10 v~~G~~v~l~C~~~~~~~p~~~~~W~k-~~~~l~~~~   45 (184)
T 3b5h_A           10 EDLGSKILLTCSLNDSATEVTGHRWLK-GGVVLKEDA   45 (184)
T ss_dssp             EEETTEEEEEEEEESCSSCCCEEEEES-SSEEEECTT
T ss_pred             EecCCCEEEEEECCCCCCCceEEEEEe-CCEEeeccc
Confidence            4568889999999999999  999996 888876543

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=97.83  E-value=1.8e-05  Score=56.83  Aligned_cols=39  Identities=8%  Similarity=0.204  Sum_probs=28.4

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCC
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG   58 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG   58 (74)
                      +..+.+|. .+++.+|+++.|.|.+.|.|.|+|+|.++++
T Consensus        49 ~~~~~~~~-~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~   87 (423)
T 3qs7_E           49 SGTVYEAA-AVEVDVSASITLQVLVDAPGNISCLWVFKHS   87 (423)
T ss_dssp             -------C-EEEECSSCCEEEEEECSCCSSCEEEEEETTE
T ss_pred             Ccceeccc-cEEEecCCcEEEEEEEEcCCCCeEEEEECCC
Confidence            45667754 7788999999999999999999999997543

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=97.83  E-value=7.5e-06  Score=54.04  Aligned_cols=46  Identities=28%  Similarity=0.505  Sum_probs=31.1

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeecC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVGD   63 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~~   63 (74)
                      .+|.+...++.......|..++|.|.|.| .|.| +|+|.+ ||.++..
T Consensus       122 ~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k-~g~~l~~  169 (253)
T 3to4_D          122 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHS  169 (253)
T ss_dssp             BCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECT
T ss_pred             CCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEE-CCEECCC
Confidence            34444443333322334567999999999 7778 999997 8888754

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=97.82  E-value=5.3e-06  Score=55.64  Aligned_cols=44  Identities=30%  Similarity=0.497  Sum_probs=29.4

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEccc-CC-CeEEEEeCCCeeec
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGS-PN-PEIIWIRSDGTAVG   62 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~-P~I~W~~~dG~~i~   62 (74)
                      +|.+...++....+..|..++|.|.|.|. |+ |+|+|.+ ||.++.
T Consensus       149 ~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k-~g~~l~  194 (279)
T 2wbj_D          149 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVH  194 (279)
T ss_dssp             CCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEE-TTEECC
T ss_pred             CCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEEE-CCEECC
Confidence            44444333333223356779999999998 54 7999997 787764

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=97.82  E-value=2.8e-05  Score=51.94  Aligned_cols=40  Identities=13%  Similarity=0.288  Sum_probs=32.5

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD   57 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~d   57 (74)
                      ..+.+++. |..+.+.+|++++|.|.+.|.|.|.|.|++.+
T Consensus        11 ~~~~v~~~-p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~   50 (276)
T 3auv_A           11 GDIQMTQS-PSSLSASVGDRVTITCRASQDVSTAVAWYQQK   50 (276)
T ss_dssp             -CCCEEEE-CSEEECCTTCCEEEEEEESSCCTTCEEEEEEC
T ss_pred             cceeEEeC-CCeEEEcCCCCEEEEeEcCCCCCCcEEEEEEC
Confidence            45567776 45666788999999999999999999999754

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=97.82  E-value=2e-05  Score=51.22  Aligned_cols=40  Identities=10%  Similarity=-0.038  Sum_probs=31.4

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccCCCe-----EEEEeCCC
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPE-----IIWIRSDG   58 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~-----I~W~~~dG   58 (74)
                      |.+...++..+.+..|++++|.|.+.|.|.|.     |+|++.++
T Consensus         3 ~~v~v~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~   47 (248)
T 3pv7_A            3 LKVEMMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSL   47 (248)
T ss_dssp             EEEECSTTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECS
T ss_pred             eEEEEeCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcC
Confidence            34444556666777899999999999999997     99998543

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=97.82  E-value=3.1e-05  Score=45.96  Aligned_cols=38  Identities=11%  Similarity=0.283  Sum_probs=30.8

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD   57 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~d   57 (74)
                      +.+++. |..+...+|++++|.|.++|.+.+.|.|++.+
T Consensus         5 ~~v~q~-p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~   42 (111)
T 1i3g_L            5 IVLTQS-HKFMSTSVGDRVSITCKASQDVGTAVAWYQQK   42 (111)
T ss_dssp             CCEEES-CSEEECCTTCCEEEEEEESSCCTTCEEEEEEC
T ss_pred             ceEEEe-CCEEEEcCCCCEEEEEEeCCCCCCCEEEEEEC
Confidence            345565 45567888999999999999999999999854

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=97.81  E-value=1.4e-05  Score=50.39  Aligned_cols=29  Identities=31%  Similarity=0.570  Sum_probs=24.3

Q ss_pred             ecCCCCeEEEEEEcccCCCeEEEEeCCCee
Q psy11558         31 FSNTTGAQVECTARGSPNPEIIWIRSDGTA   60 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~   60 (74)
                      ..+|+.+.|.|.|.|.|.|+|+|.+ +|..
T Consensus       115 ~~~g~~v~l~C~~~g~P~p~v~W~~-~~~~  143 (202)
T 3bp6_B          115 VPGTGEVQLTCQARGYPLAEVSWQN-VSVP  143 (202)
T ss_dssp             CTTTCCEEEEEEEEEBSCCEEEETT-CCSC
T ss_pred             cCCCCeEEEEEEccccCCceEEEEe-CCCC
Confidence            3467789999999999999999987 4443

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=97.81  E-value=6.3e-06  Score=55.83  Aligned_cols=45  Identities=18%  Similarity=0.327  Sum_probs=22.4

Q ss_pred             cceEEEcCCCcE-EecCCCCeEEEEEEc----ccCCCeEEEEeCCCeeecC
Q psy11558         18 GPIFIKEPPNRI-DFSNTTGAQVECTAR----GSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        18 ~P~fv~~Pp~~v-~~~~g~~v~L~C~A~----G~P~P~I~W~~~dG~~i~~   63 (74)
                      +|.++..+...+ .+..|+.+.|.|.|.    |+|.|+|+|++ ||..+..
T Consensus       224 ~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~-~g~~l~~  273 (349)
T 4dep_C          224 PPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTI-DGKKPDD  273 (349)
T ss_dssp             SCEEC----------------CCCEEEEECCCTTCCCEEEEES-SCC----
T ss_pred             CCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEE-CCEEccc
Confidence            566665543332 566788899999999    68999999996 7777654

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=97.81  E-value=3.7e-05  Score=50.39  Aligned_cols=31  Identities=16%  Similarity=0.476  Sum_probs=24.8

Q ss_pred             CC-CCeEEEEEEccc-CCC-eEEEEeCCCeeecC
Q psy11558         33 NT-TGAQVECTARGS-PNP-EIIWIRSDGTAVGD   63 (74)
Q Consensus        33 ~g-~~v~L~C~A~G~-P~P-~I~W~~~dG~~i~~   63 (74)
                      .| ..+.|.|.|.|. |.| +|+|.+.||..+..
T Consensus       139 ~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~  172 (232)
T 1dn0_B          139 SDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISS  172 (232)
T ss_dssp             --CCSEEEEEEEEEEBSSCCEEEEEETTSCEECC
T ss_pred             CCCCcEEEEEEEEEEeCCCeEEEEEcCCCCceee
Confidence            45 679999999997 888 99999868877643

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=97.81  E-value=1.1e-05  Score=53.42  Aligned_cols=45  Identities=29%  Similarity=0.495  Sum_probs=30.1

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEccc-CCC-eEEEEeCCCeeecC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGS-PNP-EIIWIRSDGTAVGD   63 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~P-~I~W~~~dG~~i~~   63 (74)
                      +|.+...++....+..|..+.|.|.|.|. |.| +|+|++ ||..+..
T Consensus       122 ~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~-~g~~l~~  168 (252)
T 1oga_E          122 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHS  168 (252)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECS
T ss_pred             CCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEE-CCEECCC
Confidence            45444433333223346679999999996 764 999997 7877653

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=97.80  E-value=3.5e-05  Score=48.74  Aligned_cols=36  Identities=19%  Similarity=0.403  Sum_probs=29.6

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEccc-CCCeEEEEeC
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGS-PNPEIIWIRS   56 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~P~I~W~~~   56 (74)
                      |.+++. + .+.+..|++++|.|.+.|. |.|.|+|++.
T Consensus         2 ~~v~~~-p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~   38 (218)
T 3s96_B            2 LVLTQS-S-SASFSLGASAKLTCTLNSQHSTYTIEWYQQ   38 (218)
T ss_dssp             CSEECC-S-EEEEETTSCEEEEEEECGGGTTCCEEEEEE
T ss_pred             CeEEeC-C-cEEECCCCcEEEEEECCCCCCCcEEEEEEE
Confidence            344444 5 6778889999999999999 9999999973

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=97.80  E-value=5.3e-05  Score=48.64  Aligned_cols=34  Identities=21%  Similarity=0.334  Sum_probs=28.1

Q ss_pred             cCCCcEEecCCCCeEEEEEEcccCCC---eEEEEeCC
Q psy11558         24 EPPNRIDFSNTTGAQVECTARGSPNP---EIIWIRSD   57 (74)
Q Consensus        24 ~Pp~~v~~~~g~~v~L~C~A~G~P~P---~I~W~~~d   57 (74)
                      .|++.+.+..|++++|.|.+.|.|.|   .|+|++++
T Consensus         9 ~P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~   45 (226)
T 4f80_A            9 GPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSS   45 (226)
T ss_dssp             CCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETT
T ss_pred             CCCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECC
Confidence            45566778889999999999998877   69999854

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=97.80  E-value=2.8e-05  Score=54.73  Aligned_cols=45  Identities=16%  Similarity=0.375  Sum_probs=31.9

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~   62 (74)
                      ..+|.+...++......+| .++|.|.|.| .|+| +|+|++ ||..+.
T Consensus       344 ~~~P~v~~~~~~~~~~~~~-~~~L~C~~~g~~P~~~~v~W~k-~g~~l~  390 (444)
T 1igt_B          344 VRAPQVYVLPPPEEEMTKK-QVTLTCMVTDFMPEDIYVEWTN-NGKTEL  390 (444)
T ss_dssp             CBCCEEEEECCCGGGTTSS-EEEEEEEEEEEBSSCCEEEEEE-TTEECS
T ss_pred             CCCCEEEEeCCChHHccCC-eEEEEEEEEeeeCCCCEEEEEE-CCEEcc
Confidence            4567776665544333445 4999999999 5666 999997 777763

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=97.80  E-value=1.6e-05  Score=50.88  Aligned_cols=45  Identities=20%  Similarity=0.386  Sum_probs=31.1

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEccc-C-CCeEEEEeCCCeeec
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGS-P-NPEIIWIRSDGTAVG   62 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P-~P~I~W~~~dG~~i~   62 (74)
                      ..+|.+...++..... .|+.++|.|.|.|. | .|+|+|.+ ||..+.
T Consensus       133 ~~~p~v~~~~~~~~~~-~g~~v~l~C~~~~~~p~~~~v~W~k-~g~~~~  179 (237)
T 3sob_L          133 VAAPSVFIFPPSDEQL-KSGTASVVCLLNNFYPREAKVQWKV-DNALQS  179 (237)
T ss_dssp             CBCCEEEEECCCHHHH-HHTEEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             CCCCceEEeCCChhhc-cCCceEEEEEEcccCCCceEEEEEE-CCCCCC
Confidence            4456666554443322 35569999999994 5 59999996 787765

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=97.79  E-value=7.8e-05  Score=46.24  Aligned_cols=32  Identities=19%  Similarity=0.300  Sum_probs=26.7

Q ss_pred             ecCCCCeEEEEEE-cccCCCeEEEEeCCCeeecC
Q psy11558         31 FSNTTGAQVECTA-RGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        31 ~~~g~~v~L~C~A-~G~P~P~I~W~~~dG~~i~~   63 (74)
                      +..|+.+.|.|.| .|.|.|+++|++ ||..+..
T Consensus        97 ~~~g~~~~l~C~~~~~~p~~~~~W~~-~g~~~~~  129 (176)
T 1f2q_A           97 VMEGQPLFLRCHGWRNWDVYKVIYYK-DGEALKY  129 (176)
T ss_dssp             EETTSCEEEEEEEGGGCCEEEEEEEE-TTEECCS
T ss_pred             eeCCCCEEEEEEecCCCCceEEEEEE-CCEEEee
Confidence            4578889999999 578889999997 8887753

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=97.78  E-value=1.9e-05  Score=51.00  Aligned_cols=37  Identities=19%  Similarity=0.345  Sum_probs=30.3

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcccC----CCeEEEEeCC
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARGSP----NPEIIWIRSD   57 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~P----~P~I~W~~~d   57 (74)
                      .+++. |..+.+.+|+.++|.|.+.|.|    .|.|+|++.+
T Consensus         3 ~v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~   43 (240)
T 1moe_A            3 VLTQS-PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQK   43 (240)
T ss_dssp             CEEEE-CSEEEECTTSCEEEEEEESSCCEETTEECEEEEEEC
T ss_pred             ceEee-CCeEEecCCCCEEEEEeCCCccccCCCceEEEEEEC
Confidence            34555 5666788899999999999999    8999999853

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=97.78  E-value=4.2e-05  Score=50.24  Aligned_cols=38  Identities=13%  Similarity=0.344  Sum_probs=31.6

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      .|.+++.| ..+.+..|++++|.|.+.|.|.|.|.|++.
T Consensus       138 ~~~~~~~p-~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~  175 (256)
T 3umt_A          138 DIQLTQSP-SSLSASLGERVSITCRASQDIGSNLNWLQQ  175 (256)
T ss_dssp             CCCEEEEC-SEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             ccEEEcCC-CeEEEECCCCEEEEEEEecCCCcEEEEEEE
Confidence            56777764 555678899999999999999999999974

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=97.78  E-value=1.8e-05  Score=52.79  Aligned_cols=42  Identities=21%  Similarity=0.381  Sum_probs=30.1

Q ss_pred             ccc-eEEEcCCCcEE-ecCCCCeEEEEEEccc---CCC-eEEEEeCCCe
Q psy11558         17 LGP-IFIKEPPNRID-FSNTTGAQVECTARGS---PNP-EIIWIRSDGT   59 (74)
Q Consensus        17 ~~P-~fv~~Pp~~v~-~~~g~~v~L~C~A~G~---P~P-~I~W~~~dG~   59 (74)
                      .+| +|++ |++... +..|++++|.|.|.|.   |.| +|+|+++++.
T Consensus        14 ~~P~v~~~-pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~   61 (239)
T 1i1c_A           14 EVSSVFIF-PPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVE   61 (239)
T ss_dssp             ---CEEEE-CCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCE
T ss_pred             cCCEEEEE-CCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCcc
Confidence            344 4555 566543 5678889999999998   988 9999986644

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=97.78  E-value=3.8e-05  Score=50.04  Aligned_cols=38  Identities=13%  Similarity=0.326  Sum_probs=31.3

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccC-----CCeEEEEeC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSP-----NPEIIWIRS   56 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P-----~P~I~W~~~   56 (74)
                      .|.+++.| ..+.+..|+.++|.|.+.|.|     .|.|+|++.
T Consensus        38 ~~~~~~~p-~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~   80 (254)
T 2c1o_A           38 ELVMTQSP-LTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQ   80 (254)
T ss_dssp             CCCEEEEC-SEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEE
T ss_pred             ceeEEeCC-ceEEecCCCcEEEEeeccCcccccCCCCceEEEEe
Confidence            56677664 566788899999999999999     599999974

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=97.77  E-value=1.8e-05  Score=53.52  Aligned_cols=38  Identities=11%  Similarity=0.200  Sum_probs=30.1

Q ss_pred             EcCCCcEEecCCCCeEEEEEEccc-------CCCeEEEEeCCCeeec
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGS-------PNPEIIWIRSDGTAVG   62 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~-------P~P~I~W~~~dG~~i~   62 (74)
                      ..|.+ ..+..|+.+.|.|.|.|+       |.|+|+|++ ||..|.
T Consensus         9 i~P~~-~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~-~g~~i~   53 (303)
T 1i1r_A            9 ISPES-PVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKT-NHFTIP   53 (303)
T ss_dssp             EESSS-CEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEE-TTEECC
T ss_pred             EccCC-ceEeCCCCEEEEEEECCccccccCCChhheEEEE-CCEECC
Confidence            44444 457788899999999975       999999997 788774

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=97.77  E-value=3.8e-05  Score=51.01  Aligned_cols=41  Identities=17%  Similarity=0.250  Sum_probs=31.3

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccCCC-----eEEEEeC-CCee
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNP-----EIIWIRS-DGTA   60 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P-----~I~W~~~-dG~~   60 (74)
                      |.+++. |..+.+..|++++|.|.+.|.|.|     .|+|++. +|..
T Consensus       122 ~~v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~  168 (256)
T 1nqb_A          122 IELTQT-PLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQS  168 (256)
T ss_dssp             CCEEEE-CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSC
T ss_pred             ccEEec-CcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCC
Confidence            455555 455567788899999999999986     9999984 4543

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=97.77  E-value=5.6e-05  Score=49.52  Aligned_cols=42  Identities=10%  Similarity=0.176  Sum_probs=32.4

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      ..|.+...| +. .+.+|++++|.|.+.|.|.|+++|.+ ||..+
T Consensus       105 ~~P~i~~~p-~~-~v~~G~~v~L~C~~~~~~~~~~~W~k-~g~~~  146 (218)
T 1uct_A          105 GKPFLSADR-GL-VLMPGENISLTCSSAHIPFDRFSLAK-EGELS  146 (218)
T ss_dssp             CCCEEEESS-CS-EECTTCCCEEEEECSSSCCSEEEEEE-TTCSS
T ss_pred             cCCEEEeCC-CC-ccCCCCCEEEEEeCCCCCCCEEEEEE-CCCcc
Confidence            467777665 33 35688889999988899999999997 66554

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=97.76  E-value=2.5e-05  Score=49.39  Aligned_cols=31  Identities=16%  Similarity=0.471  Sum_probs=27.3

Q ss_pred             cCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         24 EPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        24 ~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      .|+ .+.+..|+.++|.|.+.|.|.|.|+|++
T Consensus         6 ~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k   36 (213)
T 3mj8_L            6 QPP-LVSVALGQKATITCSGDKLSDVYVHWYQ   36 (213)
T ss_dssp             CCS-EEEEETTSCEEEEEECSSTTTSCEEEEE
T ss_pred             eCC-cEEEeCCCCEEEEEEcCCCCCceEEEEE
Confidence            345 6678889999999999999999999997

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=97.76  E-value=1.8e-05  Score=50.20  Aligned_cols=31  Identities=13%  Similarity=0.418  Sum_probs=27.0

Q ss_pred             CCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         26 PNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      |..+.+..|++++|.|.+.|.|.|.|+|++.
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~   36 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQ   36 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEE
Confidence            4556678899999999999999999999874

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=97.74  E-value=3.8e-05  Score=52.00  Aligned_cols=35  Identities=11%  Similarity=0.308  Sum_probs=28.7

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRS   56 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~   56 (74)
                      .+.+|+ .+.+.+|++++|.|.+.|.|  .|.|.|++.
T Consensus        25 ~v~~p~-~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~   61 (291)
T 2gki_A           25 QLQQSG-PELVKPGASVKMSCKASGYTFTSYVMHWVKQ   61 (291)
T ss_dssp             EEEECC-CEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             EEEcCC-cEEecCCCCEEEEEeccCCcccccEEEEEEE
Confidence            445555 56688899999999999998  799999985

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=97.74  E-value=5.3e-05  Score=45.00  Aligned_cols=35  Identities=14%  Similarity=0.349  Sum_probs=28.6

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEccc--CCCeEEEEeC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGS--PNPEIIWIRS   56 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~--P~P~I~W~~~   56 (74)
                      +++. |..+...+|++|+|.|.+.|.  |.+.|.|++.
T Consensus         3 v~q~-p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~   39 (111)
T 2ywz_A            3 VDQT-PRTITKETGESLTIKCVLKDHSCGLSSTTWYRT   39 (111)
T ss_dssp             EEEE-CSEEEECTTCCEEEEEEEESCSSCCCEEEEEEE
T ss_pred             eEEC-CCcEEEccCCCEEEEeEECCCCCCCCEEEEEEe
Confidence            4455 556678889999999999987  6899999975

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=97.74  E-value=1.4e-05  Score=51.35  Aligned_cols=43  Identities=23%  Similarity=0.403  Sum_probs=26.3

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccC-CC-eEEEEeCCCeeec
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSP-NP-EIIWIRSDGTAVG   62 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P-~P-~I~W~~~dG~~i~   62 (74)
                      +|.+...++..... .|+.++|.|.|.|.| .| +|+|.+ ||.++.
T Consensus       134 ~p~v~~~~~~~~~~-~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~~~  178 (233)
T 3bqu_C          134 APTVSIFPPSSEQL-TSGGASVVCFLNNFYPKDINVKWKI-DGSERQ  178 (233)
T ss_dssp             CCEEEEECCCHHHH-HTTEEEEEEEEEEEBSSCEEEEEEE-C-----
T ss_pred             CCEEEEeCCCHHhh-cCCceEEEEEEccccCCceEEEEEE-CCeeCC
Confidence            56666554443222 466799999999964 44 799997 777654

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.73  E-value=4.3e-06  Score=56.22  Aligned_cols=37  Identities=22%  Similarity=0.627  Sum_probs=0.0

Q ss_pred             CCcEEecCCCCeEEEEEEccc-CCCeEEEEeCCCeeecC
Q psy11558         26 PNRIDFSNTTGAQVECTARGS-PNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~-P~P~I~W~~~dG~~i~~   63 (74)
                      ++.+.+..|+.+.|.|.+.|. |.|+|+|++ ||..+..
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k-~g~~~~~   52 (334)
T 1ry7_B           15 QEQLVFGSGDAVELSCPPPGGGPMGPTVWVK-DGTGLVP   52 (334)
T ss_dssp             ---------------------------------------
T ss_pred             cCcEEEecCCcEEEEeeCCCCCCCcceEEEE-CCeeCCC
Confidence            455567788899999999998 689999996 7776644

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=97.73  E-value=7.8e-05  Score=48.15  Aligned_cols=42  Identities=12%  Similarity=0.374  Sum_probs=30.3

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEccc-CCCeEEEEeCCCeeec
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGS-PNPEIIWIRSDGTAVG   62 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~P~I~W~~~dG~~i~   62 (74)
                      +|.+...|. . .+.+|+.+.|.|.+.|. |.|+|+|++ ||..+.
T Consensus        89 ~p~~~~~~~-~-~v~~G~~v~L~C~~~~~~p~~~v~W~k-~g~~~~  131 (204)
T 3sgj_C           89 GWLLLQAPR-W-VFKEEDPIHLRCHSWKNTALHKVTYLQ-NGKGRK  131 (204)
T ss_dssp             SSEEEECSC-S-EEETTCCEEEEEEEGGGCCCEEEEEEE-TTEEEE
T ss_pred             CceEecCCc-e-eEeCCCcEEEEEEecCCCCCceEEEEE-CCcEee
Confidence            455555544 3 35578889999999766 679999996 777653

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=97.73  E-value=2.5e-05  Score=49.72  Aligned_cols=42  Identities=17%  Similarity=0.413  Sum_probs=29.8

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEccc-CCC-eEEEEeCCCee
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGS-PNP-EIIWIRSDGTA   60 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~P-~I~W~~~dG~~   60 (74)
                      .+|.+...++... ...|+.++|.|.|.|. |.| +|+|.+ ||..
T Consensus       117 ~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~~P~p~~v~W~~-~~~~  160 (210)
T 3d9a_H          117 TPPSVYPLAPGSA-AQTNSMVTLGCLVKGYFPEPVTVTWNS-GSLS  160 (210)
T ss_dssp             BCCEEEEECCTTS-CCCSSEEEEEEEEEEEBSSCCEEEEGG-GTBC
T ss_pred             CCCEEEEecCCcc-cccCCcEEEEEEEeeEecCCcEEEEee-CCcc
Confidence            3455554444332 3467789999999998 999 999986 5654

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=97.72  E-value=0.00011  Score=45.55  Aligned_cols=31  Identities=10%  Similarity=0.372  Sum_probs=25.8

Q ss_pred             ecCCCCeEEEEEEcccCCC-eEEEEeCCCeeec
Q psy11558         31 FSNTTGAQVECTARGSPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~P-~I~W~~~dG~~i~   62 (74)
                      +..|..+.|.|.|.|.|+| +|+|++ ||..+.
T Consensus       100 ~~~g~~~~l~C~~~~~~~~~~~~W~k-~g~~~~  131 (175)
T 1fnl_A          100 FKEEDPIHLRCHSWKNTALHKVTYLQ-NGKDRK  131 (175)
T ss_dssp             EETTCCEEEEEEECTTCCCEEEEEEE-TTEEEE
T ss_pred             ecCCCCEEEEEEcCCCCCceEEEEEE-CCeEcc
Confidence            5678889999999998765 999997 777663

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=97.72  E-value=3.6e-05  Score=54.94  Aligned_cols=47  Identities=19%  Similarity=0.349  Sum_probs=33.3

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCC--CeEEEEeCCCeeecC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPN--PEIIWIRSDGTAVGD   63 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~--P~I~W~~~dG~~i~~   63 (74)
                      ..+|.+...|+....+..|..+.|.|.|.|.++  ++|+|++ ||.++..
T Consensus       347 ~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k-~g~~l~~  395 (475)
T 1iga_A          347 TFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQ-GSQELPR  395 (475)
T ss_pred             CCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEE-CCEECCC
Confidence            456666665555433456777999999999743  5999997 7887753

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=97.72  E-value=2.2e-05  Score=52.95  Aligned_cols=43  Identities=14%  Similarity=0.138  Sum_probs=34.5

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEc-------ccCCCeEEEEeCCCee
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTAR-------GSPNPEIIWIRSDGTA   60 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~-------G~P~P~I~W~~~dG~~   60 (74)
                      ...|.|...|. .+.+.+|+.+.|.|.+.       |.|.|+|+|.+ ||..
T Consensus        16 ~~~p~~~~~~~-~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k-~~~~   65 (339)
T 3o4o_C           16 RSCRFRGRHYK-REFRLEGEPVALRCPQVPYWLWASVSPRINLTWHK-NDSA   65 (339)
T ss_dssp             --CEEEEECSC-CEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEE-SSCC
T ss_pred             hhhHhhCcCce-EEEEECCccEEEEeccccccccccCCCCceEEEEE-CCCC
Confidence            45789999865 44577888999999998       99999999997 5554

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=97.72  E-value=3.2e-05  Score=51.79  Aligned_cols=41  Identities=17%  Similarity=0.356  Sum_probs=33.6

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD   57 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~d   57 (74)
                      ...+.+++. |..+.+..|++++|.|.+.|.|.|.|+|++.+
T Consensus        22 ~~~~~v~~~-p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~   62 (279)
T 2wbj_D           22 GGGAVVSQH-PSWVISKSGTSVKIECRSLDFQATTMFWYRQF   62 (279)
T ss_dssp             CCCCCEEEE-CSEEEEETTSCEEEEEEESSSCEEEEEEEEEC
T ss_pred             cccceEEeC-CCeEEecCCCeEEEEEEeCCCCCCeEEEEEeC
Confidence            345677776 55667788999999999999999999999854

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=97.71  E-value=4.5e-05  Score=48.65  Aligned_cols=37  Identities=16%  Similarity=0.315  Sum_probs=28.7

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeCC-Ce
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRSD-GT   59 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~d-G~   59 (74)
                      +.+|+ .+.+..|++++|.|.+.|.|  .|.|+|++.+ |.
T Consensus         4 ~~~p~-~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~   43 (219)
T 1c1e_H            4 LVQSG-PELKKPGETVKISCKASGYMFTNYGMNWVKQAPGK   43 (219)
T ss_dssp             EEECC-CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTS
T ss_pred             EeCCC-CeEecCCCcEEEEEEEeCcccccceEEEEEeCCCC
Confidence            34444 45677898999999999986  8999999864 44

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=97.71  E-value=4.3e-05  Score=50.44  Aligned_cols=36  Identities=19%  Similarity=0.380  Sum_probs=30.0

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      .+++. |..+.+.+|++++|.|.+.|.|.|.|.|++.
T Consensus         5 ~v~q~-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~   40 (256)
T 3tf7_C            5 SVTQP-DARVTVSEGASLQLRCKYSYSATPYLFWYVQ   40 (256)
T ss_dssp             EEECS-CSEEEEETTSCEEECCEEECSSCCEEEEEEE
T ss_pred             EEEec-CceEEecCCCeEEEEEEeCCCCCceEEEEEE
Confidence            44444 5666788899999999999999999999873

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=97.71  E-value=3.9e-05  Score=52.00  Aligned_cols=45  Identities=11%  Similarity=0.262  Sum_probs=29.6

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeecC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVGD   63 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~~   63 (74)
                      .+|.+...++..... .|..++|.|.|.| .|.+ +|+|++ ||.+|..
T Consensus       218 ~~P~v~~~~~~~~~~-~g~~~~l~C~~~g~~p~~~~v~W~k-~g~~l~~  264 (323)
T 2wqr_A          218 AAPEVYAFATPEWPG-SRDKRTLACLIQNFMPEDISVQWLH-NEVQLPD  264 (323)
T ss_dssp             BCCEEEEEECCCCTT-CTTEEEEEEEEEEEBSSCCEEEEEE-TTEECCG
T ss_pred             CCCEEEEeCCChHHh-cCCcEEEEEEeeeeeCCCcEEEEEE-CCEECCC
Confidence            456554443332112 3778999999999 4544 899997 7887753

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=97.70  E-value=1.9e-05  Score=53.21  Aligned_cols=44  Identities=20%  Similarity=0.426  Sum_probs=34.6

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEE---cccC-CCeEEEEeCCCeeec
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTA---RGSP-NPEIIWIRSDGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A---~G~P-~P~I~W~~~dG~~i~   62 (74)
                      .+|.++.. +..+.+..|+.+.|.|.|   .|+| .|.+.|++ ||.++.
T Consensus       225 ~~P~i~~~-~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~-~g~~~~  272 (339)
T 3o4o_C          225 TIPVIISP-LKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTA-NDTHIE  272 (339)
T ss_dssp             CCCEECCC-SCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEES-SSSCSS
T ss_pred             CCCEEecC-CceeEeccCCCEEEEEEEECCCCCCCCceEEEEE-CCeecc
Confidence            46677665 555567788889999999   9999 99999985 776653

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=97.70  E-value=5.7e-05  Score=44.68  Aligned_cols=35  Identities=14%  Similarity=0.457  Sum_probs=27.5

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD   57 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~d   57 (74)
                      +++. |..+...+|++++|.|.+.+.+ |.|.|++.+
T Consensus         4 v~q~-p~~~~v~~G~~v~L~C~~~~~~-~~v~W~r~~   38 (113)
T 1h5b_A            4 VEQS-PSALSLHEGTDSALRCNFTTTM-RSVQWFRQN   38 (113)
T ss_dssp             EEEE-CSEEEEETTCCEEEEEEESSCC-SEEEEEEEC
T ss_pred             eEEC-CCEEEEecCCcEEEEEEECCCC-ceEEEEEEC
Confidence            3455 4556678899999999999976 899998753

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=97.70  E-value=6.3e-05  Score=48.76  Aligned_cols=35  Identities=17%  Similarity=0.444  Sum_probs=29.5

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      .+++. |..+.+..|++++|.|.+.|.|.|.|.|++
T Consensus         3 ~v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r   37 (246)
T 4dzb_B            3 VVSQH-PSWVISKSGTSVKIECRSLDFQATTMFWYR   37 (246)
T ss_dssp             CEEEE-CSEEEEETTSCEEEEEEESSSCCCSEEEEE
T ss_pred             ccEEC-CcEEEEeCCCcEEEEeEecCCCceEEEEEE
Confidence            34555 566667889999999999999999999997

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=97.69  E-value=5.9e-05  Score=50.25  Aligned_cols=45  Identities=18%  Similarity=0.423  Sum_probs=31.5

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcc-cCC-CeEEEEeCCCeeec
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARG-SPN-PEIIWIRSDGTAVG   62 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~-P~I~W~~~dG~~i~   62 (74)
                      ..+|.+...++..... .|..+.|.|.|.| .|+ .+|+|++ ||..+.
T Consensus       121 ~~~P~v~v~~~~~~~~-~g~~~~L~C~~~g~~P~~~~v~W~k-~g~~l~  167 (239)
T 1i1c_A          121 PRGPQVYTMAPPKEEM-TQSQVSITCMVKGFYPPDIYTEWKM-NGQPQE  167 (239)
T ss_dssp             CBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEE-TTEECS
T ss_pred             CcCCEEEEECCChHHh-cCCcEEEEEEEeeeECCCeEEEEEE-CCEECC
Confidence            4567766665554323 3557999999999 555 3899996 788764

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=97.69  E-value=0.0001  Score=46.87  Aligned_cols=41  Identities=17%  Similarity=0.261  Sum_probs=30.9

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      ..|.+...|..  .+.+|+.++|.|.|.| |.|+++|.+ ||..+
T Consensus       107 ~~p~i~~~p~~--~v~~G~~v~L~C~~~~-~~~~~~w~k-~g~~~  147 (201)
T 1nkr_A          107 EKPSLSAQPGP--TVLAGENVTLSCSSRS-SYDMYHLSR-EGEAH  147 (201)
T ss_dssp             CCCEEEEESCS--EECTTCEEEEEEEESS-CCSEEEEEE-TTCSS
T ss_pred             CCCceecCCCC--ccCCCCeEEEEEeCCC-CCceEEEEE-CCccc
Confidence            35677776543  3567888999999998 679999997 56544

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=97.69  E-value=4.4e-05  Score=51.29  Aligned_cols=40  Identities=20%  Similarity=0.446  Sum_probs=30.6

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC-CCee
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS-DGTA   60 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~-dG~~   60 (74)
                      |.+.+. +..+.+..|+.++|.|.+.|.| |.|+|++. +|..
T Consensus       163 ~~~~~~-p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~  203 (282)
T 1qok_A          163 NVLTQS-PAIMSASPGEKVTITCSASSSV-SYMHWFQQKPGTS  203 (282)
T ss_dssp             CCEEEE-CSEEEECTTCCEEEEEEESSCC-SCCEEEEECTTSC
T ss_pred             eEEecC-CCEEEEcCCCcEEEEEEecCCC-ceEEEEEECCCCC
Confidence            445555 4555677888999999999999 99999984 3443

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=97.69  E-value=1.2e-05  Score=51.58  Aligned_cols=43  Identities=21%  Similarity=0.350  Sum_probs=28.9

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCC--eEEEEeCCCeeec
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNP--EIIWIRSDGTAVG   62 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P--~I~W~~~dG~~i~   62 (74)
                      +|.+...++.... ..|+.++|.|.|.|.|+|  +|+|.+ ||.++.
T Consensus       135 ~p~v~~~~~~~~~-~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~l~  179 (234)
T 2j6e_L          135 APSVTLFPPSSEE-LQANKATLVCLISDFFPGAVTVAWKA-DGAPVK  179 (234)
T ss_dssp             CCCCCEECCCHHH-HTTSCCCEEECCCBCSSCCCEEEEEE-TTEECC
T ss_pred             CCcccccCCChhH-hcCCceEEEEEEEEEcCCceEEEEEE-CCEECC
Confidence            4444444443322 246679999999996543  999997 788764

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=97.69  E-value=4.8e-05  Score=49.48  Aligned_cols=37  Identities=16%  Similarity=0.331  Sum_probs=30.1

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcccC-----CCeEEEEeCC
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARGSP-----NPEIIWIRSD   57 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~P-----~P~I~W~~~d   57 (74)
                      .+++. |..+.+..|++++|.|.+.|.|     .|.|.|++.+
T Consensus         3 ~v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~   44 (247)
T 1svz_A            3 LMTQT-PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQK   44 (247)
T ss_dssp             CEEEE-CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEEC
T ss_pred             cEEec-CCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEEC
Confidence            34555 5666788899999999999999     7999998753

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=97.68  E-value=3.7e-05  Score=48.72  Aligned_cols=32  Identities=9%  Similarity=0.275  Sum_probs=26.7

Q ss_pred             CCcEEecCCCCeEEEEEEcccC---CCeEEEEeCC
Q psy11558         26 PNRIDFSNTTGAQVECTARGSP---NPEIIWIRSD   57 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~P---~P~I~W~~~d   57 (74)
                      |..+.+..|+.++|.|.+.|.|   .|.|+|++.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~   41 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEK   41 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeC
Confidence            4555678898999999999998   5899999753

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=97.68  E-value=2.9e-05  Score=51.26  Aligned_cols=37  Identities=19%  Similarity=0.267  Sum_probs=29.7

Q ss_pred             CCcEEecCCCCeEEEEEEcccCC-CeEEEEeCCCeeecC
Q psy11558         26 PNRIDFSNTTGAQVECTARGSPN-PEIIWIRSDGTAVGD   63 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~P~-P~I~W~~~dG~~i~~   63 (74)
                      +..+.+..|+.+.|.|.+.| |. |+|+|.+.||..+..
T Consensus        98 ~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~  135 (290)
T 2o26_X           98 GLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPT  135 (290)
T ss_dssp             CCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCT
T ss_pred             ccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCC
Confidence            34455667888999999997 88 999997678987754

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=97.68  E-value=6.7e-05  Score=47.37  Aligned_cols=40  Identities=13%  Similarity=0.297  Sum_probs=27.6

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      .|.+...|. . .+..|+.++|.|.|.|. .|+++|.+ ||..+
T Consensus       101 ~p~i~~~~~-~-~v~~G~~v~L~C~~~~~-~~~v~W~k-~g~~~  140 (198)
T 1ugn_A          101 KPTLSAQPS-P-VVNSGGNVTLQCDSQVA-FDGFILCK-EGEDE  140 (198)
T ss_dssp             CCEEEEESC-S-EEETTCCEEEEEECSSC-CSEEEEEE-C----
T ss_pred             CCccccCCc-c-ccCCCCcEEEEEecCCC-CcEEEEEE-CCCcc
Confidence            456655543 2 35578889999999998 89999997 56554

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.67  E-value=6e-05  Score=45.94  Aligned_cols=37  Identities=22%  Similarity=0.583  Sum_probs=30.2

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEccc-CCCeEEEEeCCC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGS-PNPEIIWIRSDG   58 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~-P~P~I~W~~~dG   58 (74)
                      +.+||..+.+..|++|+|.|.+.+. |.+.|.|++.++
T Consensus        11 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~r~~~   48 (136)
T 2d9c_A           11 VIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAG   48 (136)
T ss_dssp             EECCCSEEEEETTSCEEECCEESCCCSCCCCEEEETTT
T ss_pred             EEecCcEEEEcCCCCEEEEEEEcCCCCCceEEEEeecC
Confidence            3445666778899999999999987 688999998654

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=97.67  E-value=4.1e-05  Score=47.61  Aligned_cols=31  Identities=16%  Similarity=0.253  Sum_probs=26.6

Q ss_pred             cEEecCCCCeEEEEEEcccCCCeEEEEeCCC
Q psy11558         28 RIDFSNTTGAQVECTARGSPNPEIIWIRSDG   58 (74)
Q Consensus        28 ~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG   58 (74)
                      .+.+..|+.+.|.|.+.|.|.|.|+|+++++
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~   34 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQ   34 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTC
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCc
Confidence            4456788899999999999999999998654

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=97.67  E-value=0.00012  Score=44.61  Aligned_cols=32  Identities=13%  Similarity=0.460  Sum_probs=26.2

Q ss_pred             EecCCCCeEEEEEE-cccCCCeEEEEeCCCeeec
Q psy11558         30 DFSNTTGAQVECTA-RGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        30 ~~~~g~~v~L~C~A-~G~P~P~I~W~~~dG~~i~   62 (74)
                      .+..|..+.|.|.+ .|.|.|+++|++ ||..+.
T Consensus        96 ~~~~g~~~~l~C~~~~~~p~~~~~W~~-~g~~~~  128 (170)
T 3ry4_A           96 EFQEGETIMLRCHSWKDKPLVKVTFFQ-NGKSQK  128 (170)
T ss_dssp             EECTTCCEEEEEEEGGGCCEEEEEEEE-TTEEEE
T ss_pred             eeecCCeEEEEEECCCCCCCceEEEEE-CCeEcc
Confidence            35678889999999 567789999997 787764

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=97.67  E-value=2.1e-05  Score=51.94  Aligned_cols=35  Identities=14%  Similarity=0.354  Sum_probs=28.3

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      +++. +..+.+..|+.++|.|.+.|.|.|.|+|++.
T Consensus       142 ~~~~-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~  176 (257)
T 1f3r_B          142 LTQS-PSLLSASVGDRVTLSCKGSQNINNYLAWYQQ  176 (257)
T ss_dssp             SCEE-TSEECCCTTCCEEEEEECSSCCBTCEEEEEE
T ss_pred             EEcc-CCEEEEcCCCCEEEEEEECCcCCCcEEEEEE
Confidence            3444 4555577888999999999999999999983

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=97.67  E-value=2.9e-05  Score=49.82  Aligned_cols=37  Identities=11%  Similarity=0.135  Sum_probs=30.3

Q ss_pred             CCcEEecCC--CCeEEEEEEcccCCCeEEEEeC--CCeeecC
Q psy11558         26 PNRIDFSNT--TGAQVECTARGSPNPEIIWIRS--DGTAVGD   63 (74)
Q Consensus        26 p~~v~~~~g--~~v~L~C~A~G~P~P~I~W~~~--dG~~i~~   63 (74)
                      |+.+.+.+|  +.++|.|.|.| |.|.|+|.++  ||..+..
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~   54 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPD   54 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCC
T ss_pred             ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccC
Confidence            356778888  89999999998 8899999876  6776543

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=97.67  E-value=0.00024  Score=48.16  Aligned_cols=35  Identities=20%  Similarity=0.334  Sum_probs=28.8

Q ss_pred             CCcEEecCCCCeEEEEEEcccC---CC-eEEEEeCCCeee
Q psy11558         26 PNRIDFSNTTGAQVECTARGSP---NP-EIIWIRSDGTAV   61 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~P---~P-~I~W~~~dG~~i   61 (74)
                      +..+.+..|+.+.|.|.|.|.|   .| .|+|.+ ||..+
T Consensus       235 ~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~-~g~~i  273 (329)
T 3oq3_B          235 DPKINVTIGEPANITCTAVSTSLLVDDVLIDWEN-PSGWI  273 (329)
T ss_dssp             CSEEEECTTSCEEEEEEEEETTCCTTCCEEEEEC-TTSCB
T ss_pred             CCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEE-CCeee
Confidence            4456678898999999999999   88 899996 66654

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=97.65  E-value=8.3e-05  Score=53.22  Aligned_cols=44  Identities=23%  Similarity=0.430  Sum_probs=30.3

Q ss_pred             ceEEEcCCCcEE-ecCCCCeEEEEEEcccCC----CeEEEEeCCCeeecC
Q psy11558         19 PIFIKEPPNRID-FSNTTGAQVECTARGSPN----PEIIWIRSDGTAVGD   63 (74)
Q Consensus        19 P~fv~~Pp~~v~-~~~g~~v~L~C~A~G~P~----P~I~W~~~dG~~i~~   63 (74)
                      |.+...++.... +..|..+.|.|.|.|.|+    |+|+|++ ||.++..
T Consensus       318 P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k-~g~~l~~  366 (523)
T 2rcj_C          318 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYV-DGVQVHN  366 (523)
T ss_pred             ceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEE-CCeEccC
Confidence            544333343322 557888999999999764    5999997 7777654

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=97.65  E-value=2.2e-05  Score=48.89  Aligned_cols=27  Identities=15%  Similarity=0.298  Sum_probs=23.4

Q ss_pred             ecCCCCeEEEEEE-cccCCCeEEEEeCC
Q psy11558         31 FSNTTGAQVECTA-RGSPNPEIIWIRSD   57 (74)
Q Consensus        31 ~~~g~~v~L~C~A-~G~P~P~I~W~~~d   57 (74)
                      ...|+.+.|.|.| .|.|.|+|+|.+++
T Consensus       133 ~~~g~~v~l~C~~~~g~p~~~v~W~~~~  160 (214)
T 3jz7_A          133 EEIGNDFKLKCEPKEGSLPLQFEWQKLS  160 (214)
T ss_dssp             CBTTCCEEEEEECSBCCSSCEEEEEECS
T ss_pred             eecCCcEEEEecCCCCCCCCEEEEEECC
Confidence            4567789999999 89999999999853

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=97.64  E-value=0.00011  Score=48.26  Aligned_cols=38  Identities=16%  Similarity=0.394  Sum_probs=31.0

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCC-CeEEEEeC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPN-PEIIWIRS   56 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~-P~I~W~~~   56 (74)
                      +|.+++.| ..+.+.+|++++|.|.+.|.|. |.|+|++.
T Consensus       149 ~~~~~~~~-~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~  187 (256)
T 3juy_B          149 EIVLTQAP-GTLSLSPGERATFSCRSSHSIRSRRVAWYQH  187 (256)
T ss_dssp             CCCEEEEC-SEEEECTTSCEEEEEEESSCCTTCCEEEEEE
T ss_pred             eeEEEecC-CeEEEeCCCCEEEEEEECCCcCCeeEEEEEE
Confidence            45677774 5556788999999999999997 99999873

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=97.64  E-value=0.00016  Score=46.09  Aligned_cols=30  Identities=20%  Similarity=0.431  Sum_probs=23.8

Q ss_pred             CCC-CeEEEEEEccc-CCCeEEEEeCCCeeecC
Q psy11558         33 NTT-GAQVECTARGS-PNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        33 ~g~-~v~L~C~A~G~-P~P~I~W~~~dG~~i~~   63 (74)
                      +|. .++|.|.|.|. |.|+|+|.+ ||..+..
T Consensus       122 ~g~~~v~L~C~~~g~~p~p~i~W~~-~g~~l~~  153 (193)
T 2if7_A          122 NMTCELHLTCSVEDADDNVSFRWEA-LGNTLSS  153 (193)
T ss_dssp             CSSEEEEEEEEEESCCTTCEEEEEE-TTEEEES
T ss_pred             CCCceEEEEEEEecCCCceEEEEEe-CCEEcCC
Confidence            444 69999999996 599999997 7776643

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=97.64  E-value=9.7e-05  Score=47.57  Aligned_cols=36  Identities=14%  Similarity=0.329  Sum_probs=28.1

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcccCC--CeEEEEeC
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARGSPN--PEIIWIRS   56 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~--P~I~W~~~   56 (74)
                      .++..|+. ..+..|+.++|.|.+.|.|.  |.|+|++.
T Consensus       121 ~~~~~~~~-~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~  158 (240)
T 1moe_A          121 VQLQQSGA-ELVEPGASVKLSCTASGFNIKDTYMHWVKQ  158 (240)
T ss_dssp             CEEEECCC-EEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             EEEeCCCc-eEEeCCCcEEEEEEEcCccCCCCEEEEEEE
Confidence            45555444 45778889999999999984  69999985

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=97.64  E-value=3.9e-05  Score=49.97  Aligned_cols=36  Identities=19%  Similarity=0.452  Sum_probs=29.8

Q ss_pred             cCCCcEEecCCCCeEEEEEE---cccCCCeEEEEeCCCe
Q psy11558         24 EPPNRIDFSNTTGAQVECTA---RGSPNPEIIWIRSDGT   59 (74)
Q Consensus        24 ~Pp~~v~~~~g~~v~L~C~A---~G~P~P~I~W~~~dG~   59 (74)
                      .+|..+.+..|+.+.|.|.|   .|.|.|+|+|++.+|.
T Consensus       123 ~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~  161 (268)
T 3mj6_A          123 EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGS  161 (268)
T ss_dssp             CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTT
T ss_pred             cCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCC
Confidence            34556677889899999999   7889999999986654

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=97.63  E-value=8.1e-05  Score=52.37  Aligned_cols=45  Identities=22%  Similarity=0.409  Sum_probs=32.0

Q ss_pred             cceEEEcCCCcEE-ecCCCCeEEEEEEcccC----CCeEEEEeCCCeeecC
Q psy11558         18 GPIFIKEPPNRID-FSNTTGAQVECTARGSP----NPEIIWIRSDGTAVGD   63 (74)
Q Consensus        18 ~P~fv~~Pp~~v~-~~~g~~v~L~C~A~G~P----~P~I~W~~~dG~~i~~   63 (74)
                      +|.+...||.... +..|+.++|.|.|.|.|    .|+|+|++ ||..+..
T Consensus       238 ~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k-~~~~~~~  287 (444)
T 1igt_B          238 GPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFV-NNVEVHT  287 (444)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEE-TTEECSS
T ss_pred             CceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEE-CCccccC
Confidence            5665444555433 46788899999999994    36999997 6666643

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=97.63  E-value=3e-05  Score=50.86  Aligned_cols=44  Identities=25%  Similarity=0.461  Sum_probs=29.4

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEccc-CCC-eEEEEeCCCeeecC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGS-PNP-EIIWIRSDGTAVGD   63 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~P-~I~W~~~dG~~i~~   63 (74)
                      +|.+...++.... ..|+.++|.|.|.|. |.| +|+|.+ ||..+..
T Consensus       150 ~P~v~~~~~~~~~-~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~~~~  195 (252)
T 3bkj_L          150 APTVSIFPPSSEQ-LTSGGASVVCFLNNFYPKDINVKWKI-DGSERQN  195 (252)
T ss_dssp             CCEEEEECCCHHH-HHHTEEEEEEEEEEEBSSCCEEEEEE-TTEEECS
T ss_pred             CcEEEEeCCChhh-cCCCcEEEEEEEeeEeCCCcEEEEEE-CCeecCC
Confidence            4555554443322 245679999999994 554 899997 7877643

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=97.62  E-value=0.0001  Score=52.78  Aligned_cols=42  Identities=14%  Similarity=0.264  Sum_probs=34.3

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCe-EEEEeCCCee
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPE-IIWIRSDGTA   60 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~-I~W~~~dG~~   60 (74)
                      .+|.|...|... .+..|+.+.|.|.+.|.|.|. |+|.+ ||..
T Consensus       210 ~~p~i~~~~~~~-~v~~G~~v~L~C~~~g~p~p~~i~W~~-~~~~  252 (524)
T 2ec8_A          210 AVPVVSVSKASY-LLREGEEFTVTCTIKDVSSSVYSTWKR-ENSQ  252 (524)
T ss_dssp             SCCEEECSCSEE-EEETTSCEEEEEEEEESSTTCEEEEEE-TTCS
T ss_pred             CCCcEEecCCcc-eEEcCCcEEEEEEEecCCCcEEEEEEe-CCCC
Confidence            678888886544 677888999999999999998 99997 4544

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=97.62  E-value=5.8e-05  Score=48.94  Aligned_cols=28  Identities=18%  Similarity=0.387  Sum_probs=24.8

Q ss_pred             EEecCCCCeEEEEEEcccC--CCeEEEEeC
Q psy11558         29 IDFSNTTGAQVECTARGSP--NPEIIWIRS   56 (74)
Q Consensus        29 v~~~~g~~v~L~C~A~G~P--~P~I~W~~~   56 (74)
                      +.+..|++++|.|.+.|.|  .|.|.|++.
T Consensus        12 ~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~   41 (247)
T 2ghw_B           12 GVVQPGKSLRLSCAASGFAFSSYAMHWVRQ   41 (247)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             EEEecCCcEEEEEEeccccCCCceEEEEEe
Confidence            5678899999999999998  799999874

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=97.61  E-value=7.2e-05  Score=50.26  Aligned_cols=42  Identities=10%  Similarity=0.181  Sum_probs=32.6

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      ..+|.|...|. .+ +..|+.++|.|.|.|. .|.++|.+ ||..+
T Consensus        22 ~~~P~i~~~p~-~~-v~~G~~v~L~C~~~~~-~~~~~W~k-~g~~~   63 (316)
T 3vh8_G           22 QDKPFLSAWPS-AV-VPRGGHVTLRCHYRHR-FNNFMLYK-EDRIH   63 (316)
T ss_dssp             --CCEEEEESC-SE-EETTSCEEEEEEBTTB-CCSEEEEE-SSCSS
T ss_pred             CCCCEeeccCC-Cc-cCCCCCEEEEEEccCC-CceEEEEe-CCCcc
Confidence            56899999976 33 4578899999999998 79999997 55543

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=97.61  E-value=3.7e-05  Score=50.61  Aligned_cols=37  Identities=11%  Similarity=0.191  Sum_probs=20.8

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      .|.+.+. |..+.+..|++++|.|.+.|.|.|.|.|++
T Consensus         2 s~~v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r   38 (259)
T 3omz_A            2 SSNLEGR-TKSVIRQTGSSAEITCDLAEGSTGYIHWYL   38 (259)
T ss_dssp             ----------CEEEETTCCEEEECCC-----CEEEEEE
T ss_pred             ccccccC-CceeEecCCCcEEEEEEEccCCCcEEEEEE
Confidence            3555555 455667889999999999999999999987

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=97.61  E-value=0.00025  Score=44.52  Aligned_cols=42  Identities=14%  Similarity=0.275  Sum_probs=30.9

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      .+|.+...|..  .+..|+.++|.|.|.|.| |.++|.+ ||..+.
T Consensus        93 ~~p~i~~~p~~--~v~~G~~v~l~C~~~~~~-~~~~w~k-~g~~~~  134 (184)
T 2gi7_A           93 AKPSLSAQPGP--AVSSGGDVTLQCQTRYGF-DQFALYK-EGDPAP  134 (184)
T ss_dssp             CCCEEEEECCC--SSCCTTCEEEEEECSSCC-CEEEEEE-CCCCTT
T ss_pred             CCCEEEeCCCc--eecCCCcEEEEEEcCCCC-cEEEEEE-CCCcCc
Confidence            45677777533  345788899999999865 7999997 666553

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=97.60  E-value=0.00011  Score=48.28  Aligned_cols=31  Identities=16%  Similarity=0.274  Sum_probs=26.4

Q ss_pred             ecCCCCeEEEEEEcc-cCCC--eEEEEeCCCeeec
Q psy11558         31 FSNTTGAQVECTARG-SPNP--EIIWIRSDGTAVG   62 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G-~P~P--~I~W~~~dG~~i~   62 (74)
                      +.+|+.++|.|.+.| .|.|  +|+|++ ||..+.
T Consensus        15 v~~G~~v~l~C~~~g~~p~p~~~v~W~k-~~~~l~   48 (265)
T 2oz4_A           15 LEVDTQGTVVCSLDGLFPVSEAQVHLAL-GDQRLN   48 (265)
T ss_dssp             EETTEEEEEEEEEESCSCGGGCEEEEEE-TTEECC
T ss_pred             EecCCCEEEEEEccCCCCCcceEEEEEe-CCEECC
Confidence            467888999999999 8988  999997 777654

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=97.59  E-value=5.8e-05  Score=52.40  Aligned_cols=45  Identities=24%  Similarity=0.463  Sum_probs=32.0

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeecCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVGDV   64 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~~~   64 (74)
                      +|.+...++..... .|+.+.|.|.|.| .|.| +|+|++ ||.++...
T Consensus       116 ~P~v~~~~~~~~~~-~g~~~~l~C~~~g~~p~~~~v~W~k-~g~~~~~~  162 (438)
T 1qgc_4          116 APTVSIFPPSSEQL-TSGGASVVCFLNNFYPKDINVKWKI-DGSERQNG  162 (438)
T ss_dssp             CCEEEEECCCHHHH-HTTEEEEEEEEEEEBSSCEEEEEEE-TTEEECTT
T ss_pred             CCEEEecCCChhhc-cCCceEEEEEEccccCCCcEEEEEE-CCEEcCCC
Confidence            56665544443323 3557999999998 7888 999997 88877543

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=97.59  E-value=3.9e-05  Score=49.96  Aligned_cols=45  Identities=24%  Similarity=0.443  Sum_probs=30.0

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEccc-CC-CeEEEEeCCCeeecCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGS-PN-PEIIWIRSDGTAVGDV   64 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~-P~I~W~~~dG~~i~~~   64 (74)
                      +|.+...++..... .|..+.|.|.|.|. |+ ++|+|++ ||.++...
T Consensus       154 ~P~v~~~~~~~~~~-~g~~v~l~C~~~g~~p~~~~v~W~k-~g~~l~~~  200 (254)
T 2c1o_A          154 APTVSIFPPSSEQL-TSGGASVVCFLNNFYPKDINVKWKI-DGSERQNG  200 (254)
T ss_dssp             CCEEEEECCCHHHH-HTTEEEEEEEEEEEBSSCCEEEEEE-SSSEECTT
T ss_pred             CCeeEeecCChhhc-cCCcEEEEEEEecccCCCcEEEEEE-CCCcccCc
Confidence            56666554443323 34579999999995 44 4699997 77776543

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=97.58  E-value=6.5e-05  Score=49.15  Aligned_cols=42  Identities=12%  Similarity=0.183  Sum_probs=33.8

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCCe-EEEEeCCCeeecC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNPE-IIWIRSDGTAVGD   63 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~-I~W~~~dG~~i~~   63 (74)
                      |+..| ..+.+..|+.+.|.|.+.|.|.|. |+|.+.||..+..
T Consensus        92 ~~~~~-~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~  134 (289)
T 3ejj_X           92 WNLLA-QEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLR  134 (289)
T ss_dssp             EEESC-SEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCT
T ss_pred             eeccc-ceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCC
Confidence            55654 556677888999999999998876 9998888887644

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=97.58  E-value=2.6e-05  Score=52.99  Aligned_cols=30  Identities=13%  Similarity=0.338  Sum_probs=25.8

Q ss_pred             ecCCCCeEEEEEEcccC-CCeEEEEeCCCeee
Q psy11558         31 FSNTTGAQVECTARGSP-NPEIIWIRSDGTAV   61 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P-~P~I~W~~~dG~~i   61 (74)
                      ...|+.+.|.|.+.|.| .|+|+|++ ||..+
T Consensus       140 ~~~G~~v~L~C~~~g~p~~~~i~W~k-~~~~l  170 (329)
T 3oq3_B          140 THDKYGIDLYCGILYAKHYNNITWYK-NNQEL  170 (329)
T ss_dssp             SSTTTCEEEECCCCSCCCCCEEEEEE-TTEEC
T ss_pred             EeCCCcEEEEeccCCCCCCceEEEEE-CCccC
Confidence            34577899999999999 99999997 67766

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=97.58  E-value=6.5e-05  Score=51.43  Aligned_cols=45  Identities=20%  Similarity=0.502  Sum_probs=30.4

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEccc-C-CCeEEEEeCCCeeec
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGS-P-NPEIIWIRSDGTAVG   62 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P-~P~I~W~~~dG~~i~   62 (74)
                      ..+|.+...++...... |..+.|.|.|.|. | .++|+|.+ ||..+.
T Consensus       240 ~~~P~v~~~~~~~~~~~-~~~~~L~C~~~g~~P~~~~v~W~k-~g~~~~  286 (344)
T 1za6_B          240 PREPQVYTLPPSRDELT-KNQVSLTCLVKGFYPSDIAVEWES-NGQPEN  286 (344)
T ss_dssp             CBCCEEEEECCCGGGGG-SSSEEEEEEEEEEBSSCCEEEEES-SSSCCC
T ss_pred             CcCCEEEEeCCChHhcc-CCcEEEEEEEeeEECCCeEEEEEE-CCeECC
Confidence            34666655554433333 4459999999996 4 46999996 787664

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=97.57  E-value=7.1e-05  Score=48.46  Aligned_cols=40  Identities=20%  Similarity=0.472  Sum_probs=26.8

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      |.+++. +..+ ..+|+.++|.|.  |+|.|+|+|.+ ||..+..
T Consensus       115 ~~~~~~-p~~v-~~~G~~v~L~C~--g~p~p~i~W~k-~~~~l~~  154 (204)
T 1sy6_A          115 GGITQT-PYKV-SISGTTVILTCP--QYPGSEILWQH-NDKNIGG  154 (204)
T ss_dssp             ----CC-CCEE-EEETTEEEEECS--CCCSSCEEEEE-TTEEESC
T ss_pred             cceecC-Ccee-eecCCcEEEEcC--CCCCCceEEEE-CCEECCC
Confidence            344444 3443 226778999999  89999999997 7777644

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=97.56  E-value=5e-05  Score=52.74  Aligned_cols=43  Identities=19%  Similarity=0.458  Sum_probs=30.6

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEccc-CCC-eEEEEeCCCeeec
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGS-PNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~P-~I~W~~~dG~~i~   62 (74)
                      +|.+...++... ...|+.+.|.|.|.|. |.| +|+|.+ ||..+.
T Consensus       343 ~P~v~~~~~~~~-~~~g~~v~L~C~~~g~~P~~~~v~W~~-~g~~~~  387 (438)
T 1qgc_4          343 PPSVYPLAPGSA-AAAASMVTLGCLVKGYFPEPVTVTWNS-GSLSSG  387 (438)
T ss_dssp             CCEEEEECCCGG-GCCSSEEEEEEEEESCBSSCCEEEEGG-GTCCSS
T ss_pred             CCeEEEcCcccc-cccCCcEEEEEEeccccCCCcEEEEec-CCCCCc
Confidence            455444444332 3467789999999998 999 999986 776654

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=97.56  E-value=9.3e-05  Score=48.53  Aligned_cols=45  Identities=31%  Similarity=0.558  Sum_probs=28.8

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEccc-C-CCeEEEEeCCCeeecC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGS-P-NPEIIWIRSDGTAVGD   63 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P-~P~I~W~~~dG~~i~~   63 (74)
                      .+|.+...++....+..+ .+.|.|.|.|. | .++|+|++ ||.++..
T Consensus       117 ~~P~v~v~~~~~~~~~~~-~~~L~C~~~g~~P~~~~v~W~k-~g~~l~~  163 (231)
T 2w59_A          117 TPPLIYPFAPHPEELSLS-RVTLSCLVRGFRPRDIEIRWLR-DHRAVPA  163 (231)
T ss_dssp             BCCEEEEECCCGGGGGSS-EEEEEEEEEEEBSSCCEEEEEE-TTEECCG
T ss_pred             cCCEEEEeCCCHHHhccC-ceEEEEEEEeccCCCcEEEEEE-CCEECCC
Confidence            355444333332223334 59999999996 4 47999997 7887743

>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility complex), HLA(human leukocyte A immune system; 1.09A {Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B 1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B 1gzp_B* 1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B 1i1f_B 1i1y_B 1duz_B* ...

Probab=97.56  E-value=0.00022  Score=42.61  Aligned_cols=43  Identities=16%  Similarity=0.287  Sum_probs=29.2

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEccc-CCC-eEEEEeCCCeeec
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGS-PNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~P-~I~W~~~dG~~i~   62 (74)
                      .+|.....|+..  ...|..++|.|.|.|- |.+ +|+|.+ ||+.+.
T Consensus         4 ~~P~V~v~~~~~--~~~~~~~~L~C~~~gFyP~~i~v~W~k-~g~~~~   48 (100)
T 1k5n_B            4 RTPKIQVYSRHP--AENGKSNFLNCYVSGFHPSDIEVDLLK-NGERIE   48 (100)
T ss_dssp             BCCEEEEEESSC--CCTTSCEEEEEEEEEEBSSCCEEEEEE-TTEECT
T ss_pred             CCCEEEEEeCCc--ccCCCcEEEEEEEEeeECCceEEEEEE-CCEECC
Confidence            456555543333  2345569999999995 544 899996 888774

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=97.55  E-value=0.0001  Score=49.51  Aligned_cols=38  Identities=18%  Similarity=0.392  Sum_probs=29.9

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeCC
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRSD   57 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~d   57 (74)
                      ...+++|+ .+.+..|++++|.|.+.|.|  .|.|.|++.+
T Consensus        27 ~~~~~~p~-~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~   66 (282)
T 1qok_A           27 QVKLQQSG-AELVRSGTSVKLSCTASGFNIKDSYMHWLRQG   66 (282)
T ss_dssp             CCEEEECC-CEEEETTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             eEEEECCC-CEEEeCCCeEEEEEeccCCCCCCceEEEEEeC
Confidence            34566655 45677898999999999996  7999999854

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=97.55  E-value=6.3e-05  Score=44.35  Aligned_cols=35  Identities=20%  Similarity=0.330  Sum_probs=28.5

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccC----CCeEEEEeC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSP----NPEIIWIRS   56 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P----~P~I~W~~~   56 (74)
                      .++. |..+.+.+|++++|.|.+.|.|    .+.|.|++.
T Consensus         4 v~q~-p~~~~~~~G~~v~L~C~~~~~~~~~~~~~v~W~r~   42 (111)
T 1j05_L            4 LTQS-PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQ   42 (111)
T ss_dssp             EEEE-CSEEECCTTSCEEEEEEESSCCEETTEECEEEEEE
T ss_pred             EEEe-CCEEEEeCCCCEEEEeecCCCcccCCCceEEEEEe
Confidence            3444 5566788899999999999988    689999985

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=97.54  E-value=0.00011  Score=46.46  Aligned_cols=34  Identities=12%  Similarity=0.199  Sum_probs=28.3

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccCCC-----eEEEEeC
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSPNP-----EIIWIRS   56 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P~P-----~I~W~~~   56 (74)
                      ..|++.+....|+.+.|.|.+.|.|.+     .|+|+++
T Consensus         5 ~~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~   43 (222)
T 3sbw_C            5 TVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEME   43 (222)
T ss_dssp             BCSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEET
T ss_pred             ecCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEEC
Confidence            346677778889999999999999954     9999985

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=96.69  E-value=1.2e-05  Score=47.73  Aligned_cols=32  Identities=16%  Similarity=0.274  Sum_probs=27.4

Q ss_pred             CCcEEecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558         26 PNRIDFSNTTGAQVECTARGSPNPEIIWIRSD   57 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~d   57 (74)
                      |..+.+.+|++++|.|.+.+.|.+.|.|++.+
T Consensus         6 p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~   37 (110)
T 1u3h_A            6 PQSLTVWEGETAILNCSYENSAFDYFPWYQQF   37 (110)
Confidence            45566788999999999999999999999753

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=97.54  E-value=6.7e-05  Score=50.73  Aligned_cols=40  Identities=13%  Similarity=0.162  Sum_probs=33.6

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCC-----------CeEEEEeCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPN-----------PEIIWIRSD   57 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~-----------P~I~W~~~d   57 (74)
                      -+.|...+...+.+.+|+.+.|.|.+.|.|.           |+|+|++++
T Consensus         6 c~~~~~~~~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~   56 (349)
T 4dep_C            6 CDDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTR   56 (349)
T ss_dssp             CEEEEECCCCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEE
T ss_pred             ccccccceeeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECC
Confidence            4567777778888889999999999998775           999999854

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=97.54  E-value=0.00011  Score=47.25  Aligned_cols=34  Identities=12%  Similarity=0.337  Sum_probs=28.5

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      +++. |..+.+.+|++++|.|. .|.|.|.|+|++.
T Consensus         3 v~q~-p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~   36 (238)
T 2p1y_A            3 VTQS-PRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQ   36 (238)
T ss_dssp             EEEE-CSEEEEETTCCEEEEEE-ECSCCSEEEEEEE
T ss_pred             ceEC-ccceEEeCCCEEEEEee-cCCCCccEEEEEE
Confidence            4555 56667888999999999 8999999999984

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=97.53  E-value=8.7e-05  Score=52.49  Aligned_cols=43  Identities=26%  Similarity=0.520  Sum_probs=30.5

Q ss_pred             cceE-EEcCCCcEE-ecCCCCeEEEEEEcccCCC----eEEEEeCCCeeec
Q psy11558         18 GPIF-IKEPPNRID-FSNTTGAQVECTARGSPNP----EIIWIRSDGTAVG   62 (74)
Q Consensus        18 ~P~f-v~~Pp~~v~-~~~g~~v~L~C~A~G~P~P----~I~W~~~dG~~i~   62 (74)
                      +|.+ +. ||.... +..|+.+.|.|.|.|.|++    +|+|++ ||.++.
T Consensus       247 ~p~v~~~-~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k-~~~~~~  295 (457)
T 1hzh_H          247 GPSVFLF-PPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYV-DGVEVH  295 (457)
T ss_dssp             SCEEEEE-CCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEE-TTEEEC
T ss_pred             CceEEeE-CcCchhhcccCCceEEEEEEEcccCCCCceEEEEEe-CCcccc
Confidence            5654 55 444322 4568889999999999654    999997 676654

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=97.51  E-value=0.0002  Score=48.34  Aligned_cols=41  Identities=22%  Similarity=0.330  Sum_probs=28.2

Q ss_pred             EEcCCCcEEec-----CCCCeEEEEEEccc-CC----CeEEEEeCCCeeecCC
Q psy11558         22 IKEPPNRIDFS-----NTTGAQVECTARGS-PN----PEIIWIRSDGTAVGDV   64 (74)
Q Consensus        22 v~~Pp~~v~~~-----~g~~v~L~C~A~G~-P~----P~I~W~~~dG~~i~~~   64 (74)
                      +..||..+...     .|..+ |.|.|.|. |.    |+|+|++ ||.+|...
T Consensus        93 V~~~P~~~~i~~~~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk-~~~~L~~~  143 (210)
T 1gsm_A           93 VYAFPNQLTVSPAALVPGDPE-VACTAHKVTPVDPNALSFSLLV-GGQELEGA  143 (210)
T ss_dssp             EEBCCSEEEEESSSBCTTCCE-EEEEEEEEBCCCTTTEEEEEEE-TTEECTTC
T ss_pred             EEecCCCcEEccceEEeCCce-EEEEeCCCCCCCCCCcEEEEEE-CCEEcccc
Confidence            34445444433     45567 99999996 74    5999996 88887543

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=97.51  E-value=0.00017  Score=47.17  Aligned_cols=38  Identities=16%  Similarity=0.349  Sum_probs=30.8

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCC----eEEEEeC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNP----EIIWIRS   56 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P----~I~W~~~   56 (74)
                      .|.+++.| ..+.+.+|++++|.|.+.|.|.|    .|+|++.
T Consensus       133 ~~~v~~~p-~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~  174 (253)
T 3uzq_A          133 ELVMTQTP-ASLAVSLGQRATISCRASENVDRYGNSFMHWYQQ  174 (253)
T ss_dssp             -CCEEEEC-SEEEECTTSCEEEEEEESSCCEETTEECEEEEEE
T ss_pred             cceEECcC-CeEEEeCCCCEEEEEEecCccccCCCcEEEEEEE
Confidence            56777774 45567889999999999999998    9999974

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=97.51  E-value=0.00013  Score=47.38  Aligned_cols=38  Identities=8%  Similarity=0.332  Sum_probs=28.9

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeCC
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRSD   57 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~d   57 (74)
                      +.++..|+... +..|+.++|.|.+.|.|  .|.|+|++.+
T Consensus       128 ~~~~~~~~~~~-v~~G~~v~L~C~~~~~~~~~~~v~W~k~~  167 (247)
T 1svz_A          128 EVQLQQSGPEL-KKPGETVKISCKATNYAFTDYSMHWVKQA  167 (247)
T ss_dssp             CCEEEECCCEE-ECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             ceEEeCCCcee-ecCCCcEEEEEEEcCcccCCcEEEEEEeC
Confidence            34555555544 77888999999999986  6799999853

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=97.51  E-value=0.00016  Score=43.22  Aligned_cols=35  Identities=14%  Similarity=0.351  Sum_probs=28.2

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRS   56 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~   56 (74)
                      +++. |..+...+|++|+|.|.+++.+  .+.|.|++.
T Consensus         3 v~q~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~   39 (113)
T 1sq2_N            3 VDQT-PRSVTKETGESLTINCVLRDASYALGSTCWYRK   39 (113)
T ss_dssp             EEEE-CSEEEECTTCCEEEEEEECSCSSCCCCEEEEEE
T ss_pred             eEeC-CccEEEecCCCEEEEEEECCCcCCCCEEEEEEe
Confidence            3454 4556788899999999999987  789999985

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=97.50  E-value=0.00024  Score=42.24  Aligned_cols=44  Identities=16%  Similarity=0.246  Sum_probs=29.7

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCC-----eEEEEeCCCeeec
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNP-----EIIWIRSDGTAVG   62 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P-----~I~W~~~dG~~i~   62 (74)
                      ..+|.+...|...  +.+|+.++|.|.+.+.|.+     +++|.+ ||..+.
T Consensus         6 ~~kP~l~~~p~~~--v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k-~g~~l~   54 (108)
T 4hwn_A            6 FPAPILRAVPSAE--PQAGSPMTLSCQTKLPLQRSAARLLFSFYK-DGRIVQ   54 (108)
T ss_dssp             CCCCEEEEESCSS--CBTTCCEEEEEEC---------CCEEEEEE-TTEEEE
T ss_pred             CCCCEEEecCCCc--CCCCCcEEEEEcccCCCCCcCcceEEEEEE-CCcCcc
Confidence            4678888887543  4578889999999988776     499997 777664

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=97.50  E-value=8.9e-05  Score=47.50  Aligned_cols=34  Identities=18%  Similarity=0.420  Sum_probs=27.8

Q ss_pred             CCcEEecCCCCeEEEEEEcc-cCCCeEEEEeCCCe
Q psy11558         26 PNRIDFSNTTGAQVECTARG-SPNPEIIWIRSDGT   59 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G-~P~P~I~W~~~dG~   59 (74)
                      .+...+..|.++.|+|.|.| .|+|+|+|.+-+|.
T Consensus        21 ~S~~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~   55 (122)
T 1xau_A           21 NSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGT   55 (122)
T ss_dssp             TEEEEECTTSCEEEEEEEECSSSCCCEEEEEECSS
T ss_pred             eccEEEecCCeEEEEeEecCCCCCCcEEEEecCCe
Confidence            34455678889999999966 78999999997773

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=97.50  E-value=5.2e-05  Score=48.08  Aligned_cols=34  Identities=18%  Similarity=0.453  Sum_probs=28.4

Q ss_pred             CCCcEEecCCCCeEEEEEEcccCC-CeEEEEeCCC
Q psy11558         25 PPNRIDFSNTTGAQVECTARGSPN-PEIIWIRSDG   58 (74)
Q Consensus        25 Pp~~v~~~~g~~v~L~C~A~G~P~-P~I~W~~~dG   58 (74)
                      .|..+.+..|+.+.|.|.+.|.|. |.|+|.+.++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~   40 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDR   40 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECT
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCC
Confidence            356667788989999999999995 9999997543

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=97.50  E-value=0.00011  Score=48.08  Aligned_cols=36  Identities=17%  Similarity=0.295  Sum_probs=28.2

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeC
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRS   56 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~   56 (74)
                      .++..|+... +.+|++++|.|.+.|.|  .|.|+|++.
T Consensus       124 ~~~~~~~~~~-v~~G~~v~L~C~~~g~~~~~~~v~W~k~  161 (242)
T 2znx_A          124 IQLQESGPSL-VKPSQTLSLTCSVTGDSITSDYXSXIRK  161 (242)
T ss_dssp             CEEEEECCSE-ECTTSCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             eeeecCCcce-ecCCCeEEEEEEEEccccCCcceeeEee
Confidence            3555555543 67888999999999987  589999985

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.50  E-value=0.00016  Score=45.57  Aligned_cols=40  Identities=10%  Similarity=0.291  Sum_probs=29.5

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      +|.+...| +. .+.+|+.++|.|.|.| |.|+++|.+ ||..+
T Consensus        99 ~p~i~~~p-~~-~v~~G~~v~L~C~~~~-~~~~~~w~k-~g~~~  138 (188)
T 1oll_A           99 TPTLSVHP-GP-EVISGEKVTFYCRLDT-ATSMFLLLK-EGRSS  138 (188)
T ss_dssp             CCEEEEES-CS-EEETTCEEEEEEECSS-SCSEEEEEE-ESSSC
T ss_pred             CCeEEECC-CC-ccccCCEEEEEEEcCC-CCCEEEEEE-CCccc
Confidence            57777665 33 2467888999999988 568999997 56544

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=97.49  E-value=0.00019  Score=46.97  Aligned_cols=38  Identities=16%  Similarity=0.387  Sum_probs=30.7

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCC-eEEEEeC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRS   56 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P-~I~W~~~   56 (74)
                      .|.+++. +..+.+.+|+.++|.|.+.|.|.| .|.|++.
T Consensus       141 ~~~~~~~-p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~  179 (257)
T 3gkz_A          141 QIVLTQS-PAIMSASPGEKVTLTCSASSSVSSSHLYWYQQ  179 (257)
T ss_dssp             CCCEECS-CSEEEECTTCCEEEEEEESSCCCGGGEEEEEE
T ss_pred             ceEEEcC-CceEEEeCCCcEEEEEEEccCccceEEEEEEE
Confidence            3556665 455667889999999999999998 9999973

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=97.49  E-value=0.0002  Score=45.10  Aligned_cols=41  Identities=15%  Similarity=0.283  Sum_probs=30.4

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      .+|.+...|..  .+..|+.++|.|.|.| |.+.+.|.+ ||..+
T Consensus        99 ~~p~~~~~~~~--~v~~G~~v~L~C~~~~-~~~~~~w~k-~g~~~  139 (196)
T 3p2t_A           99 SKPTLSALPSP--LVTSGKSVTLLCQSRS-PMDTFLLCK-ERAAH  139 (196)
T ss_dssp             CCCEEEEESCS--EECTTCCEEEEEEEEE-EEEEEEEEE-TTCCC
T ss_pred             CCCEEEeCCcc--eecCCCeEEEEEecCC-CCCEEEEEe-CCCcc
Confidence            35667666543  3567888999999999 557999997 66544

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=97.49  E-value=4.9e-05  Score=48.24  Aligned_cols=27  Identities=19%  Similarity=0.582  Sum_probs=23.6

Q ss_pred             CCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         33 NTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        33 ~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      .|..+.|.|.|   |.|+|+|++ ||.++..
T Consensus       121 ~G~~v~l~C~~---p~p~i~W~k-~g~~i~~  147 (186)
T 1jbj_A          121 GDGSVLLTCGL---TDKTIKWLK-DGSIISP  147 (186)
T ss_dssp             SSCEEEEECSS---SCSCEEEEE-TTEECCC
T ss_pred             CCCeEEEEeeC---CCCeEEEEE-CCEECcc
Confidence            77789999999   999999996 8888753

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=97.48  E-value=0.0001  Score=43.74  Aligned_cols=35  Identities=17%  Similarity=0.415  Sum_probs=28.4

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccC------CCeEEEEeCC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSP------NPEIIWIRSD   57 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P------~P~I~W~~~d   57 (74)
                      ++. |..+...+|++++|.|.++|.|      .+.|.|++.+
T Consensus         5 ~q~-p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~r~~   45 (114)
T 1eeq_A            5 TQS-PDSLAVSLGERATINCKSSQSVLDSSNSKNYLAWYQQK   45 (114)
T ss_dssp             EEE-CSEEEECTTSCEEEEEEESSCCEETTTTEECEEEEEEC
T ss_pred             Eec-CCeEEEcCCCeEEEEEEcCCCccccccCCccEEEEEEC
Confidence            444 5666788999999999999988      4899999853

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=97.48  E-value=0.00017  Score=42.66  Aligned_cols=41  Identities=15%  Similarity=0.130  Sum_probs=32.1

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      ..|.+...|...  +..|+.|+|.|.+.+.+ +.+.|++ ||..+
T Consensus         4 ~kP~i~~~p~~~--v~~G~~VtL~C~~~~~~-~~~~w~k-~g~~~   44 (105)
T 2vsd_A            4 PQPSLSLHPSQG--VSLGDTVTLRCHLPRMA-AWVQLWL-NGTLR   44 (105)
T ss_dssp             CCCEEEEESCSS--CCTTCEEEEEEECCSSC-EEEEEEE-TTEEE
T ss_pred             CCCEEEeCCCCC--cCcCCCEEEEEEcCCCC-cEEEEEE-CCccc
Confidence            568888887653  56788899999999864 7899997 66554

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=97.48  E-value=0.00011  Score=46.24  Aligned_cols=35  Identities=14%  Similarity=0.297  Sum_probs=28.2

Q ss_pred             EcCCCcEEecCCCCeEEEEEEccc-------CCCeEEEEeCC
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGS-------PNPEIIWIRSD   57 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~-------P~P~I~W~~~d   57 (74)
                      .+.|..+...+|++++|.|.+.+.       |.|.|.|++.+
T Consensus         4 ~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~   45 (214)
T 2zg1_A            4 LQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDG   45 (214)
T ss_dssp             EECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETT
T ss_pred             eeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecC
Confidence            334566778889999999999975       78999999854

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=97.48  E-value=0.00018  Score=46.50  Aligned_cols=28  Identities=18%  Similarity=0.500  Sum_probs=23.1

Q ss_pred             cCCCCeEEEEEEccc-CCC-eEEEEeCCCee
Q psy11558         32 SNTTGAQVECTARGS-PNP-EIIWIRSDGTA   60 (74)
Q Consensus        32 ~~g~~v~L~C~A~G~-P~P-~I~W~~~dG~~   60 (74)
                      ..|..+.|.|.|.|. |.| +|+|.+ ||..
T Consensus       141 ~~g~~v~L~C~~~g~~P~p~~v~W~~-~~~~  170 (225)
T 1op3_H          141 TSGGTAALGCLVKDYFPEPVTVSWNS-GALT  170 (225)
T ss_dssp             CCCCEEEEEEEEEEEBSSCCEEECCT-TSCC
T ss_pred             cCCCcEEEEEEEEeEECCCeEEEEec-CCCc
Confidence            457789999999997 888 999986 5654

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=97.48  E-value=0.0002  Score=45.98  Aligned_cols=39  Identities=18%  Similarity=0.388  Sum_probs=29.8

Q ss_pred             EEcCCCcEEecCCCCeEEEEEE-cccCCCeEEEEeCCCeeec
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTA-RGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A-~G~P~P~I~W~~~dG~~i~   62 (74)
                      ...|+.. .+.+|+.+.|.|.+ .|.|.|+++|++ ||..+.
T Consensus        86 ~~~~~~~-~~~~g~~v~l~C~~~~~~p~~~v~W~~-~g~~~~  125 (262)
T 3rjd_A           86 LLQVSSR-VFTEGEPLALRCHAWKDKLVYNVLYYR-NGKAFK  125 (262)
T ss_dssp             EEEESCS-EEETTSCEEEEEEEGGGCCCEEEEEEE-TTEEEE
T ss_pred             EecCCCe-EEecCCeEEEEEEccCCCCCceEEEEE-CCcccc
Confidence            3343333 35678889999999 899999999996 777764

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=97.48  E-value=6.8e-05  Score=49.13  Aligned_cols=41  Identities=12%  Similarity=0.196  Sum_probs=31.2

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCC--CeEEEEeCCCeeecC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPN--PEIIWIRSDGTAVGD   63 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~--P~I~W~~~dG~~i~~   63 (74)
                      |... +..+.+..|+.+.|.|.+.| |.  |+|+|.+++|..+..
T Consensus        92 ~~~~-~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~  134 (292)
T 4dkd_C           92 WNVL-AQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMR  134 (292)
T ss_dssp             EEES-CSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCS
T ss_pred             cccc-CCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCcccc
Confidence            4444 34556778889999999999 65  889999877776543

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=97.47  E-value=0.00035  Score=42.31  Aligned_cols=38  Identities=24%  Similarity=0.269  Sum_probs=29.3

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCC---CeEEEEeCCC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPN---PEIIWIRSDG   58 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~---P~I~W~~~dG   58 (74)
                      .+..|+..+....|++++|.|.+.+.|.   +.|.|++.+.
T Consensus         8 ~V~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~   48 (139)
T 1pko_A            8 RVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPF   48 (139)
T ss_dssp             EEECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--
T ss_pred             EEECCCCCEEEEeCCCEEEeeEccCCCCCCceEEEEEECCC
Confidence            3455676777888999999999998764   8999998653

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=97.47  E-value=0.00011  Score=47.34  Aligned_cols=29  Identities=17%  Similarity=0.596  Sum_probs=23.9

Q ss_pred             cCCCCeEEEEEEccc-CCC-eEEEEeCCCeee
Q psy11558         32 SNTTGAQVECTARGS-PNP-EIIWIRSDGTAV   61 (74)
Q Consensus        32 ~~g~~v~L~C~A~G~-P~P-~I~W~~~dG~~i   61 (74)
                      ..|..+.|.|.|.|. |.| +|+|.+ ||..+
T Consensus       135 ~~g~~v~L~C~~~g~~P~p~~v~W~~-~g~~~  165 (215)
T 1c5d_H          135 TTSSTVTLGCLVKGYFPEPVTVTWNS-GALSS  165 (215)
T ss_dssp             CCCSSEEEEEEEEEEBSSCCEEEEGG-GTTCC
T ss_pred             ccCCcEEEEEEEeeeEcCCcEEEEcc-CCccC
Confidence            467789999999998 999 999986 56543

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=97.47  E-value=0.00013  Score=48.66  Aligned_cols=38  Identities=11%  Similarity=0.337  Sum_probs=31.2

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccC------CCeEEEEeC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSP------NPEIIWIRS   56 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P------~P~I~W~~~   56 (74)
                      .+.+++. |..+.+.+|++++|.|.+.|.|      .|.|.|++.
T Consensus         5 ~~~v~q~-p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~   48 (264)
T 2gjj_A            5 DIVLTQT-PSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQ   48 (264)
T ss_dssp             CCCEEEE-CSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEE
T ss_pred             ccceEec-CCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEE
Confidence            4566676 4556678899999999999999      799999985

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=97.46  E-value=5.8e-05  Score=48.70  Aligned_cols=31  Identities=13%  Similarity=0.176  Sum_probs=24.7

Q ss_pred             ecCCCCeEEEEEEcccCC---CeEEEEeCCCeeec
Q psy11558         31 FSNTTGAQVECTARGSPN---PEIIWIRSDGTAVG   62 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~---P~I~W~~~dG~~i~   62 (74)
                      +..|+.++|.|.|.|.|+   |+|+|++ ||..+.
T Consensus       103 ~~~G~~~~L~C~~~~~~p~~~~~i~W~k-~~~~l~  136 (202)
T 1vca_A          103 LEAGKPITVKCSVADVYPFDRLEIDLLK-GDHLMK  136 (202)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEE-TTEEEE
T ss_pred             EcCCCCEEEEEEECCcCCCCCeEEEEEe-CCeECc
Confidence            457888999999999754   4899997 777664

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=97.45  E-value=8.5e-05  Score=52.21  Aligned_cols=44  Identities=18%  Similarity=0.333  Sum_probs=29.7

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCC--eEEEEeCCCeeec
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNP--EIIWIRSDGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P--~I~W~~~dG~~i~   62 (74)
                      .+|.+...|+..... .|..++|.|.|.|.++|  +|+|++ ||.++.
T Consensus       335 ~~P~v~~~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k-~g~~l~  380 (434)
T 1igy_B          335 RAPQVYTIPPPKEQM-AKDKVSLTCMITDFFPEDITVEWQS-DGQAPE  380 (434)
T ss_dssp             BCCCCEEECCCSSSS-SSSEEEEEEEEEEEBCSCEEEEEEE-TTSCCS
T ss_pred             cCCEEEEECCCHHHh-cCCcEEEEEEEEeeECCCeEEEEEE-CCEecC
Confidence            466666555443222 34469999999996433  899997 777664

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=97.45  E-value=0.00016  Score=45.47  Aligned_cols=27  Identities=19%  Similarity=0.503  Sum_probs=22.5

Q ss_pred             ecCCCCeEEEEEEccc----CCCeEEEEeCC
Q psy11558         31 FSNTTGAQVECTARGS----PNPEIIWIRSD   57 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~----P~P~I~W~~~d   57 (74)
                      +.+|..+.|.|.|.|.    |.|+|+|.+++
T Consensus       135 ~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~  165 (214)
T 2zg1_A          135 LESGRPTRLSCSLPGSCEAGPPLTFSWTGNA  165 (214)
T ss_dssp             CCTTCCEEEEEECTTCCSCSSCCEEEEESST
T ss_pred             ccCCCeEEEEEEeccCCCCCCCceEEEeCCC
Confidence            3467789999999985    99999999743

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=97.45  E-value=9.7e-05  Score=49.31  Aligned_cols=37  Identities=19%  Similarity=0.300  Sum_probs=29.0

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeCC
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRSD   57 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~d   57 (74)
                      .++..| ..+.+.+|++++|.|.+.|.|  .|.|+|++.+
T Consensus       136 ~~~~~p-~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~  174 (276)
T 3auv_A          136 VQLVES-GGGLVQPGGSLRLSCAASGFTISDYWIHWVRQA  174 (276)
T ss_dssp             CEEEEE-CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEC
T ss_pred             eEEECC-CceEecCCCeEEEEEEecCccCCCCEEEEEEcC
Confidence            445554 445677888999999999988  6999999853

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=97.44  E-value=5.7e-05  Score=51.29  Aligned_cols=32  Identities=16%  Similarity=0.335  Sum_probs=27.0

Q ss_pred             EEecCCCCeEEEEEEccc-----CCCeEEEEeCCCeee
Q psy11558         29 IDFSNTTGAQVECTARGS-----PNPEIIWIRSDGTAV   61 (74)
Q Consensus        29 v~~~~g~~v~L~C~A~G~-----P~P~I~W~~~dG~~i   61 (74)
                      ..+..|+.++|.|.|.|+     |.|+|.|++ ||..|
T Consensus        10 ~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~-~g~~l   46 (313)
T 2d9q_B           10 PIVHLGDPITASCIIKQNCSHLDPEPQILWRL-GAELQ   46 (313)
T ss_dssp             SEECTTCCEEEEECCCTTSCSSCSCSCCEEES-SSCBC
T ss_pred             cEEcCCCCEEEEEEECCCCCCCCcccceEEEe-CCEEC
Confidence            346788899999999998     789999996 77766

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=97.44  E-value=0.00015  Score=45.89  Aligned_cols=28  Identities=11%  Similarity=0.219  Sum_probs=23.6

Q ss_pred             eEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         37 AQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        37 v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      ..|.|.|.|.|.|+|+|.+ ||.++....
T Consensus       108 ~~L~C~~~~~p~p~i~W~~-~~~~l~~~~  135 (171)
T 1ccz_A          108 ATLTCEVLEGTDVELKLYQ-GKEHLRSLR  135 (171)
T ss_dssp             TEEEEECSSCSSCEEEEEE-TTEEEEEES
T ss_pred             cEEEEEeCCCCCcEEEEEE-CCEECcCCc
Confidence            5899999999999999996 788775433

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=97.43  E-value=0.0003  Score=45.47  Aligned_cols=26  Identities=19%  Similarity=0.497  Sum_probs=23.0

Q ss_pred             CCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         35 TGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        35 ~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      ..++|.|.|.|.|.|+|+|.+ ||.++
T Consensus       116 ~~v~L~C~~~~~p~~~~~W~~-~g~~l  141 (182)
T 1hnf_A          116 INTTLTCEVMNGTDPELNLYQ-DGKHL  141 (182)
T ss_dssp             TTTEEEEECSSCSSCEEEEEE-SSCEE
T ss_pred             CcEEEEeEccCCCCCEEEEEE-CCEEC
Confidence            369999999999999999997 67766

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=97.43  E-value=0.00011  Score=47.61  Aligned_cols=27  Identities=26%  Similarity=0.688  Sum_probs=23.1

Q ss_pred             cCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         32 SNTTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        32 ~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      .+|+.++|.|.|   |.|+|+|++ ||.++.
T Consensus        16 ~~G~~v~L~C~~---p~~~i~W~k-~g~~l~   42 (204)
T 1sy6_A           16 QEDGSVLLTCDA---EAKNITWFK-DGKMIG   42 (204)
T ss_dssp             CSSSEEEEEECS---CSSEEEEEE-TTEEEE
T ss_pred             cCCCeEEEEEcC---CCCEEEEEE-CCEECC
Confidence            467789999999   899999997 788774

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=97.43  E-value=0.00014  Score=47.22  Aligned_cols=42  Identities=17%  Similarity=0.373  Sum_probs=27.7

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEccc-CCC-eEEEEeCCCee
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGS-PNP-EIIWIRSDGTA   60 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~P-~I~W~~~dG~~   60 (74)
                      ..|.+...+++.. ...|..+.|.|.|.|. |.| +|+|.+ ||..
T Consensus       129 ~~P~i~~~~~~~~-~~~g~~~~l~C~~~g~~P~p~~v~W~~-~~~~  172 (228)
T 3bae_H          129 TAPSVYPLAPVCG-DTTGSSVTLGCLVKGYFPEPVTLTWNS-GSLS  172 (228)
T ss_dssp             BCCEEEEECC------CCSEEEEEEEEEEEBSSCCEEEEGG-GTCC
T ss_pred             CCCEEEEeccccc-ccCCCCEEEEEEEccEeCCCEEEEEee-CCcc
Confidence            3455554444432 3467789999999997 988 999986 5543

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=97.42  E-value=0.00017  Score=42.22  Aligned_cols=35  Identities=11%  Similarity=0.244  Sum_probs=28.9

Q ss_pred             CCCcEEecCCCCeEEEEEE-cccCCCeEEEEeCCCe
Q psy11558         25 PPNRIDFSNTTGAQVECTA-RGSPNPEIIWIRSDGT   59 (74)
Q Consensus        25 Pp~~v~~~~g~~v~L~C~A-~G~P~P~I~W~~~dG~   59 (74)
                      ++..+....|++++|.|.+ .+.|.+.|.|++.+|.
T Consensus         9 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~   44 (110)
T 2ptt_A            9 SIPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQ   44 (110)
T ss_dssp             CCCSEEEETTSCEEECSCSSCCCSCSEEEEEESTTB
T ss_pred             CCCCEEEecCCcEEEeCCccCCCCcCEEEEEecCCc
Confidence            3455667789999999999 8889999999996565

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=97.42  E-value=0.00017  Score=47.81  Aligned_cols=40  Identities=18%  Similarity=0.301  Sum_probs=32.0

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccC-----CCeEEEEeCC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSP-----NPEIIWIRSD   57 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P-----~P~I~W~~~d   57 (74)
                      ..+.+++.| ..+.+.+|++++|.|.+.|.|     .|.|.|++.+
T Consensus        14 ~~~~v~~~p-~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~   58 (268)
T 1x9q_A           14 SDVVMTQTP-LSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQK   58 (268)
T ss_dssp             CCCCEEEEC-SEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEEC
T ss_pred             ccceEEeeC-CeEEecCCCCEEEEeEecCCcccccCCceEEEEEEC
Confidence            456677764 555678899999999999998     5999999753

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=97.42  E-value=6.6e-05  Score=49.19  Aligned_cols=30  Identities=13%  Similarity=0.236  Sum_probs=25.1

Q ss_pred             cEEecCCCCeEEEE---EEcccCCCeEEEEeCCC
Q psy11558         28 RIDFSNTTGAQVEC---TARGSPNPEIIWIRSDG   58 (74)
Q Consensus        28 ~v~~~~g~~v~L~C---~A~G~P~P~I~W~~~dG   58 (74)
                      .++...|+.++|.|   .+.|.|.|+|+|++ +|
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k-~g   34 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFK-LG   34 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEE-EE
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEE-cC
Confidence            45567888999999   57899999999997 45

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=97.42  E-value=8.7e-05  Score=48.01  Aligned_cols=42  Identities=12%  Similarity=0.280  Sum_probs=29.0

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEccc-CC--CeEEEEeCCCeee
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGS-PN--PEIIWIRSDGTAV   61 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~--P~I~W~~~dG~~i   61 (74)
                      .+|.+...+...  ...|..++|.|.|.|. |.  |+|+|.+ ||..+
T Consensus       122 ~~P~v~~~~~~~--~~~g~~v~L~C~~~g~~P~~~~~v~W~~-~~~~~  166 (220)
T 2fbj_H          122 RNPTIYPLTLPP--ALSSDPVIIGCLIHDYFPSGTMNVTWGK-SGKDI  166 (220)
T ss_dssp             BCCEEEEECCCS--SSCCSSEEEEEEEEEEBSCCCEEEEESC-CCSSC
T ss_pred             CCCEEEEeeccc--ccCCCcEEEEEEEEeEECCCcEEEEEec-CCEec
Confidence            345554443222  3467789999999998 87  8999986 56544

>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high resolution, anisotropic AN refinement, immune system; HET: NAG FUC; 1.35A {Mus musculus} SCOP: b.1.1.2 PDB: 1bqh_B 1cd1_B 1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L 1fzk_B* 1g7q_B* 1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L* 1kj2_L* 1kj3_L 1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...

Probab=97.41  E-value=0.00035  Score=41.64  Aligned_cols=43  Identities=16%  Similarity=0.208  Sum_probs=28.9

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEccc-CCC-eEEEEeCCCeeec
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGS-PNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~P-~I~W~~~dG~~i~   62 (74)
                      .+|.....|...  ...|..++|.|.|.|- |+. +|+|.+ ||+.+.
T Consensus         3 ~~P~V~v~~~~~--~~~~~~~~L~C~~~gfyP~~i~v~W~k-~g~~~~   47 (99)
T 1lk2_B            3 KTPQIQVYSRHP--PENGKPNILNCYVTQFHPPHIEIQMLK-NGKKIP   47 (99)
T ss_dssp             BCCEEEEEESSC--CCTTSCEEEEEEEEEEBSSCCEEEEEE-TTEECT
T ss_pred             cCCEEEEEcCCc--ccCCCCEEEEEEEEEEECCCcEEEEEE-CCEECC
Confidence            356555543332  2345579999999996 433 899996 888774

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=97.41  E-value=0.00031  Score=46.01  Aligned_cols=38  Identities=16%  Similarity=0.322  Sum_probs=29.8

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEccc--CCCeEEEEeC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGS--PNPEIIWIRS   56 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~--P~P~I~W~~~   56 (74)
                      .|.|... +..+.+.+|++++|.|.+.|.  |.|.|.|++.
T Consensus         6 ~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~   45 (256)
T 3juy_B            6 HQVQLVQ-SGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQ   45 (256)
T ss_dssp             -CCEEEE-CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             ceEEEEe-cCCceecCCCeEEEEEEeecccccCceEEEEEE
Confidence            3444444 667778899999999999994  7899999973

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=97.41  E-value=0.00016  Score=48.73  Aligned_cols=45  Identities=24%  Similarity=0.420  Sum_probs=29.8

Q ss_pred             ccceEEEcCCCcEE-ecCCCCeEEEEEEcccC----CCeEEEEeCCCeeec
Q psy11558         17 LGPIFIKEPPNRID-FSNTTGAQVECTARGSP----NPEIIWIRSDGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~-~~~g~~v~L~C~A~G~P----~P~I~W~~~dG~~i~   62 (74)
                      .+|.....||+... +..|..+.|.|.|.|.+    ..+|+|++ ||..+.
T Consensus        21 ~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k-~g~~l~   70 (240)
T 4acp_A           21 GGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYV-DGVEVH   70 (240)
T ss_dssp             --CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEE-TTEEEC
T ss_pred             CCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEE-CCcccC
Confidence            34544444455544 44577899999999974    33899997 787764

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=97.41  E-value=0.00074  Score=39.76  Aligned_cols=33  Identities=15%  Similarity=0.354  Sum_probs=27.8

Q ss_pred             CCCcEEecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558         25 PPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD   57 (74)
Q Consensus        25 Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~d   57 (74)
                      +|..+...+|++++|.|.+.+.+.+.|.|++.+
T Consensus         6 ~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~rq~   38 (112)
T 2z35_A            6 TGGQVALSEEDFLTIHCNYSASGYPALFWYVQY   38 (112)
T ss_dssp             SCSEEEEETTCCEEECCEEECSSCCEEEEEEEC
T ss_pred             CCCcEEEcCCCCEEEEEEECCCCCCeEEEEEEC
Confidence            355667788999999999999889999999753

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=97.41  E-value=0.00017  Score=46.73  Aligned_cols=39  Identities=15%  Similarity=0.248  Sum_probs=24.7

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCe
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGT   59 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~   59 (74)
                      +|.+...|...  ...|..+.|.|.|.| .|.| +|+|.+ ||.
T Consensus       119 ~P~v~~~~~~~--~~~~~~~~L~C~~~g~~P~pi~v~W~k-~g~  159 (248)
T 3pv7_A          119 SPASRLLLDQV--GMKENEDKYMCESSGFYPEAINITWEK-QTQ  159 (248)
T ss_dssp             CCEEEEECC----------CEEEEEEEEEBSSCCEEEEEE-ECS
T ss_pred             CCceEEecCCc--cccCCCcEEEEEEccEECCCeEEEEEE-CCc
Confidence            56666554433  224556889999999 8999 999997 553

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=97.41  E-value=0.00012  Score=47.67  Aligned_cols=29  Identities=17%  Similarity=0.583  Sum_probs=21.1

Q ss_pred             cCCCCeEEEEEEccc-CCC-eEEEEeCCCeee
Q psy11558         32 SNTTGAQVECTARGS-PNP-EIIWIRSDGTAV   61 (74)
Q Consensus        32 ~~g~~v~L~C~A~G~-P~P-~I~W~~~dG~~i   61 (74)
                      ..|..++|.|.|.|. |.| +|+|.+ ||..+
T Consensus       134 ~~g~~v~L~C~~~g~~P~p~~v~W~~-~g~~~  164 (227)
T 1mju_H          134 TSGSSVTLGCLVKGYFPEPVTLTWNS-GSLSS  164 (227)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGG-GTBCT
T ss_pred             cCCCcEEEEEEeecEeCCCeEEEEec-CCCcC
Confidence            457789999999996 888 999986 56543

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=97.40  E-value=0.0002  Score=51.67  Aligned_cols=35  Identities=11%  Similarity=0.078  Sum_probs=28.3

Q ss_pred             CcEEecCCCCeEEEEEEc----ccCCCeEEEEeCCCeeec
Q psy11558         27 NRIDFSNTTGAQVECTAR----GSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        27 ~~v~~~~g~~v~L~C~A~----G~P~P~I~W~~~dG~~i~   62 (74)
                      ..+.+..|+.+.|.|.|.    |.|.|+|+|++ ||..+.
T Consensus       450 ~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k-~g~~~~  488 (585)
T 2ocw_A          450 GNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNN-TGCQAL  488 (585)
T ss_pred             CceeEecCCcEEEEEEecCCCCCCccEEEEEee-cCceee
Confidence            445567888899999997    88999999997 666553

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=97.40  E-value=0.00022  Score=42.58  Aligned_cols=37  Identities=11%  Similarity=0.467  Sum_probs=29.1

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEc---ccCCCeEEEEeCCC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTAR---GSPNPEIIWIRSDG   58 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~---G~P~P~I~W~~~dG   58 (74)
                      +..++..+....|++++|.|.+.   +.+.+.|.|++.+.
T Consensus         7 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~   46 (135)
T 1xt5_A            7 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGAS   46 (135)
T ss_dssp             EECSCSEEEEETTSCEEECCEEEEETCCSCCEEEEEEESS
T ss_pred             EeCCCceEEEeCCCCEEEeeEeecCCCCCccEEEEEeeCC
Confidence            34456677788899999999976   47999999998643

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=97.40  E-value=0.00013  Score=46.78  Aligned_cols=29  Identities=24%  Similarity=0.670  Sum_probs=23.6

Q ss_pred             cCCCCeEEEEEEcc-cCC-C-eEEEEeCCCeee
Q psy11558         32 SNTTGAQVECTARG-SPN-P-EIIWIRSDGTAV   61 (74)
Q Consensus        32 ~~g~~v~L~C~A~G-~P~-P-~I~W~~~dG~~i   61 (74)
                      ..|..+.|.|.|.| .|. | +|+|.+ ||..+
T Consensus       136 ~~g~~v~L~C~~~~~~P~~~~~v~W~~-~g~~~  167 (221)
T 3m8o_H          136 QPDGNVVIACLVQGFFPQEPLSVTWSE-SGQGV  167 (221)
T ss_dssp             CCTTEEEEEEEEEEEBSSCSEEEEESC-CSTTC
T ss_pred             ccCCCEEEEEEEEeeECCCCEEEEEEE-CCEEC
Confidence            46777999999999 887 4 999985 77655

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=97.40  E-value=0.00014  Score=47.58  Aligned_cols=39  Identities=15%  Similarity=0.285  Sum_probs=29.2

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEccc--CCCeEEEEeC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGS--PNPEIIWIRS   56 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~--P~P~I~W~~~   56 (74)
                      .+++.+++|+.. .+.+|++++|.|.+.|.  |.|.|.|++.
T Consensus         7 ~~~v~~~~p~~~-~v~~G~~v~L~C~~~~~~~~~~~v~W~k~   47 (257)
T 3gkz_A            7 DKEVQLQESGPS-LVKPSQTLSLTCSVTGDSVTSGYWSWIRQ   47 (257)
T ss_dssp             --CEEEEEECCS-EECTTCCEEEEEEEEESCCSSCEEEEEEE
T ss_pred             CccEEEECCCCe-EEcCCCcEEEEEEEEcccccceEEEEEEE
Confidence            345566665554 47889999999999994  5899999984

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=97.40  E-value=0.00018  Score=42.35  Aligned_cols=35  Identities=14%  Similarity=0.302  Sum_probs=27.9

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRS   56 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~   56 (74)
                      +++. |..+....|++++|.|.+.|.+  .+.|.|++.
T Consensus         3 v~q~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~   39 (108)
T 2coq_A            3 VDQT-PRIATKETGESLTINCVLRDTACALDSTNWYRT   39 (108)
T ss_dssp             EEEE-CSEEEECTTCCEEEEEEECCSSEEEEEEEEEEE
T ss_pred             eEeC-CceEEEcCCCCEEEEeEeCCCcCCCCEEEEEEc
Confidence            3455 4556678899999999999974  789999985

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=97.40  E-value=0.00011  Score=50.33  Aligned_cols=31  Identities=16%  Similarity=0.253  Sum_probs=26.5

Q ss_pred             cEEecCCCCeEEEEEEcccCCCeEEEEeCCC
Q psy11558         28 RIDFSNTTGAQVECTARGSPNPEIIWIRSDG   58 (74)
Q Consensus        28 ~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG   58 (74)
                      .+.+.+|+.+.|.|.+.|.|.|.|+|+++++
T Consensus         3 ~v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~   33 (363)
T 1wio_A            3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQ   33 (363)
T ss_dssp             EEEEETTSCEEECCCCTTCSSCCEEEEETTC
T ss_pred             eEEEeCCCeEEEEEEecCCCceEEEEEeCCc
Confidence            3456688899999999999999999998554

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=97.40  E-value=0.00062  Score=49.39  Aligned_cols=28  Identities=21%  Similarity=0.425  Sum_probs=23.1

Q ss_pred             eEEEEEEcc-cCCCeEEEEeCCCeeecCCC
Q psy11558         37 AQVECTARG-SPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        37 v~L~C~A~G-~P~P~I~W~~~dG~~i~~~~   65 (74)
                      +.|.|.|.| .|.|+|+|.+ ||.++....
T Consensus       490 ~~l~C~~~~~~P~~~i~W~~-~g~~l~~~~  518 (581)
T 3o3u_N          490 KVGTCVSEGSYPAGTLSWHL-DGKPLVPNE  518 (581)
T ss_dssp             EEEEEEEEEEBSCCEEEEEE-TTEECCTTS
T ss_pred             eEEEEECCCCCCCCeEEEEE-CCEECCCCC
Confidence            567999999 5999999986 888876543

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=97.39  E-value=0.0001  Score=46.72  Aligned_cols=35  Identities=11%  Similarity=0.398  Sum_probs=26.3

Q ss_pred             CCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         26 PNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      +-.+. ..|+.+.|.|.|.| |.+ |+|++ ||..+...
T Consensus         7 ~~~v~-~~G~~v~L~C~~~~-~~~-i~W~k-~g~~l~~~   41 (186)
T 1jbj_A            7 EYKVS-ISGTSVELTCPLDS-DEN-LKWEK-NGQELPQK   41 (186)
T ss_dssp             CCEEE-EETTEEEEECSSCC-CTT-CEEEE-TTEEECSC
T ss_pred             EEEEE-eCCcEEEEEEeCCC-CCc-eEEEE-CCEECCCC
Confidence            44444 45778999999999 655 99996 88887653

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=97.37  E-value=0.00026  Score=44.25  Aligned_cols=35  Identities=14%  Similarity=0.270  Sum_probs=26.6

Q ss_pred             CCCCeEEEEEEccc-CCCeEEEEeCCCeeecCCCCce
Q psy11558         33 NTTGAQVECTARGS-PNPEIIWIRSDGTAVGDVPGLR   68 (74)
Q Consensus        33 ~g~~v~L~C~A~G~-P~P~I~W~~~dG~~i~~~~~~r   68 (74)
                      .+.++.|.|.+.|. |.|.|+|++ ||..+......+
T Consensus        16 ~~~~~~l~C~~~~~~p~~~i~W~~-~g~~i~~~~~~~   51 (212)
T 2r15_A           16 TAEGIQLYSFVTYYVEDLKVNWSH-NGSAIRYSDRVK   51 (212)
T ss_dssp             CSSEEEEEEEBSSCCSSCEEEEEE-TTEECCCCSSEE
T ss_pred             cCceEEEEEEEeccCCCceEEEEE-CCEEccCCCeEE
Confidence            45568999999995 599999997 788876654443

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=97.37  E-value=0.00019  Score=46.58  Aligned_cols=38  Identities=8%  Similarity=0.306  Sum_probs=28.0

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRS   56 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~   56 (74)
                      +|.++..|+. +...+|+.++|.|.+.|.|  .|.|.|++.
T Consensus       131 ~~~~~~~~~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~  170 (250)
T 3esu_F          131 SEVQLQQSGP-ELVKPGASVKISCKDSGYAFSSSWMNWVKQ  170 (250)
T ss_dssp             ----CEECCC-EEECTTCCEEEEEECCSTTGGGSEEEEEEE
T ss_pred             cceEEecCCc-eEEcCCceEEEEEEecCCcccCCEEEEEEE
Confidence            3455666544 4577888999999999988  899999974

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=97.37  E-value=0.00084  Score=39.79  Aligned_cols=35  Identities=14%  Similarity=0.358  Sum_probs=28.6

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      .++. |..+...+|++++|.|.+++.+.+.|.|++.
T Consensus         4 v~q~-p~~~~v~~G~~vtL~C~~~~~~~~~v~W~rq   38 (112)
T 1fo0_B            4 LEQN-PRWRLVPRGQAVNLRCILKNSQYPWMSWYQQ   38 (112)
T ss_dssp             EEEE-CSEEECCTTCCEEEEEEESCTTCCEEEEEEE
T ss_pred             EEeC-CCeEEEecCCcEEEEEEeCCCCCceEEEEEE
Confidence            3455 4556678899999999998888999999975

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=97.36  E-value=0.0003  Score=47.36  Aligned_cols=45  Identities=20%  Similarity=0.505  Sum_probs=32.1

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~   62 (74)
                      ..+|.+...++..... .|..+.|.|.|.| .|.+ +|+|.+ ||..+.
T Consensus       128 ~~~P~V~v~~~~~~~~-~g~~~~L~C~~~gf~P~~i~v~W~k-~g~~~~  174 (240)
T 4acp_A          128 PREPQVYTLPPSRDEL-TKNQVSLTCLVKGFYPSDIAVEWES-NGQPEN  174 (240)
T ss_dssp             CBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEE-TTEECS
T ss_pred             CCCCEEEEECCChHHh-cCCceEEEEEEeEEeCCCcEEEEEE-CCEECC
Confidence            4567666666554323 3667999999999 6765 899997 777654

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=97.35  E-value=0.00021  Score=46.73  Aligned_cols=34  Identities=15%  Similarity=0.427  Sum_probs=27.5

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      ++++| ..+.+.+|++++|.|.+.|.|  .|.|.|++
T Consensus         4 ~~~~p-~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r   39 (253)
T 3uzq_A            4 LLEQS-GAELVKPGASVRLSCTASGFNIKDTYMSWVK   39 (253)
T ss_dssp             CEEEC-CCEEECTTCCEEEEEEECSSCGGGSCEEEEE
T ss_pred             eEecC-CCeeecCCCcEEEEEEeeCCcccCceEEEEE
Confidence            34554 455678899999999999965  89999998

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=97.35  E-value=0.00026  Score=51.68  Aligned_cols=45  Identities=18%  Similarity=0.129  Sum_probs=32.0

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCC--eEEEEeCCCeeec
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNP--EIIWIRSDGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P--~I~W~~~dG~~i~   62 (74)
                      .+|.....||....+..|..+.|.|.|.|.++|  +|+|.+ ||..+.
T Consensus       295 ~~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k-~g~~~~  341 (512)
T 1zvo_C          295 QPLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEV-AGKVPT  341 (512)
T ss_pred             CCCEEEEECCChHHhccCCceEEEEEEeceECCCeEEEEEE-CCEecc
Confidence            456655555554445568889999999997444  999997 666554

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=97.35  E-value=0.00018  Score=43.57  Aligned_cols=36  Identities=25%  Similarity=0.469  Sum_probs=29.2

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcccC----CCeEEEEeC
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARGSP----NPEIIWIRS   56 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~P----~P~I~W~~~   56 (74)
                      .+++. |..+.+.+|+.|+|.|.+++.+    .+.|.|++.
T Consensus         3 ~v~q~-p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~   42 (126)
T 4ffy_L            3 VLTQS-PASLAVSLGQRATISCRASESVDHYGNSFIYWYQQ   42 (126)
T ss_dssp             CEEEE-CSEEEEETTSCEEEEEEESSCCEETTEECEEEEEE
T ss_pred             cEEeC-CCeEEEeCCCCEEEEEecCCCcccCCCceEEEEEE
Confidence            34555 5666778899999999999998    789999984

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=97.34  E-value=0.00011  Score=48.11  Aligned_cols=30  Identities=13%  Similarity=0.303  Sum_probs=23.3

Q ss_pred             cCCCCeEEEEEEccc-CC-CeEEEEeCCCeee
Q psy11558         32 SNTTGAQVECTARGS-PN-PEIIWIRSDGTAV   61 (74)
Q Consensus        32 ~~g~~v~L~C~A~G~-P~-P~I~W~~~dG~~i   61 (74)
                      ..|..+.|.|.|.|. |. |+|+|.++++..+
T Consensus       145 ~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~l  176 (242)
T 1hxm_B          145 KLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTI  176 (242)
T ss_dssp             GSSSCEEEEEEEEEESSCCEEEEEEESSSCCC
T ss_pred             ccCCCceEEEEEeeEECCCeEEEEEcCCCEee
Confidence            357789999999997 75 7999998544344

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=97.34  E-value=0.00031  Score=41.54  Aligned_cols=35  Identities=20%  Similarity=0.342  Sum_probs=28.1

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccC-----CCeEEEEeCC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSP-----NPEIIWIRSD   57 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P-----~P~I~W~~~d   57 (74)
                      ++. |..+...+|++|+|.|.+++.+     .+.|.|++..
T Consensus         5 ~q~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~rq~   44 (113)
T 1dlf_L            5 TQT-PLSLPVSLGNQASISCRSSQSLVHSNGNTYLHWYLQK   44 (113)
T ss_dssp             EEE-CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEEC
T ss_pred             EEe-CCEEEEcCCCCEEEEEEccccccccCCCceEEEEEEC
Confidence            444 4556788899999999999987     5899998753

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=97.34  E-value=5.2e-05  Score=49.62  Aligned_cols=29  Identities=17%  Similarity=0.416  Sum_probs=24.2

Q ss_pred             CCCeEEEEEEccc-CC-CeEEEEeCCCeeec
Q psy11558         34 TTGAQVECTARGS-PN-PEIIWIRSDGTAVG   62 (74)
Q Consensus        34 g~~v~L~C~A~G~-P~-P~I~W~~~dG~~i~   62 (74)
                      |..+.|.|.|.|. |. ++|+|.+.||..+.
T Consensus       145 g~~~~L~C~~~g~~P~~~~v~W~~~~g~~l~  175 (230)
T 1ypz_F          145 HKTGTYLCLLEAFFPDVIRVYWKEKDGNTIL  175 (230)
T ss_dssp             HSCEEEEEEEEEESSCCCEEEEECTTSSCBC
T ss_pred             CCcceEEEEEeeecCCCeEEEEEccCCeEcc
Confidence            5679999999997 86 69999986887664

>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide), major histocompatibility complex class I DD, transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP: b.1.1.2

Probab=97.34  E-value=0.00047  Score=42.75  Aligned_cols=45  Identities=16%  Similarity=0.171  Sum_probs=31.0

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCC--eEEEEeCCCeeec
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNP--EIIWIRSDGTAVG   62 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P--~I~W~~~dG~~i~   62 (74)
                      ...+|.....|+..  ...|..++|.|.|.|-.+|  +|+|.+ ||+.+.
T Consensus        21 ~~~~P~V~v~~~~~--~~~~~~~tL~C~a~gFyP~~I~v~W~k-nG~~i~   67 (119)
T 1bii_B           21 IQKTPQIQVYSRHP--PENGKPNILNCYVTQFHPPHIEIQMLK-NGKKIP   67 (119)
T ss_dssp             CCBCCEEEEEESSC--CCSSSCEEEEEEEEEEBSSCCEEEEEE-TTEECS
T ss_pred             CCcCCEEEEEcCCc--ccCCCCEEEEEEEEeecCCCeEEEEEE-CCEECC
Confidence            34667666543333  2345579999999996444  899996 888874

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=97.33  E-value=0.00031  Score=44.62  Aligned_cols=39  Identities=18%  Similarity=0.389  Sum_probs=31.4

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD   57 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~d   57 (74)
                      .+.+++. |..+...+|++|+|.|.+++.+.+.|.|++.+
T Consensus        16 ~~~v~q~-p~~v~v~~G~sVtL~C~~s~~~~~~v~Wyrq~   54 (146)
T 2yc1_B           16 EIVLTQS-PATLSVSPGERATLSCRASQSVRSYLAWYQQK   54 (146)
T ss_dssp             CCCEEEE-CSEEEECTTSCEEEEEEESSCCTTCEEEEEEC
T ss_pred             cceEEEe-CCEEEEecCCCEEEEEEECCCCCCEEEEEEEC
Confidence            3445555 55667889999999999999999999999853

>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R

Probab=97.32  E-value=0.00051  Score=42.33  Aligned_cols=39  Identities=18%  Similarity=0.286  Sum_probs=31.4

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      .++.+++.|.. +....|++++|.|.+++.+.+.+.|++.
T Consensus         3 ~~~~v~Q~p~~-~~v~~G~~vtL~C~~s~~~~~~v~WyrQ   41 (128)
T 1nez_G            3 QAPELRIFPKK-MDAELGQKVDLVCEVLGSVSQGCSWLFQ   41 (128)
T ss_dssp             -CCEEEEESSC-EEECTTCCEEEEEEEESCCSSCEEEEEE
T ss_pred             cCCeeEECCCe-EEEcCCCCEEEEEEeCccCCCcEEEEEe
Confidence            45678888654 4678899999999999887789999974

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=97.32  E-value=0.0002  Score=48.47  Aligned_cols=37  Identities=14%  Similarity=0.356  Sum_probs=29.3

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcccCCC------eEEEEeCC
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARGSPNP------EIIWIRSD   57 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P------~I~W~~~d   57 (74)
                      .+.+. +..+.+.+|++++|.|.+.|.|.|      .|.|++.+
T Consensus       161 ~v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~  203 (291)
T 2gki_A          161 VMSQS-PSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQK  203 (291)
T ss_dssp             CEECS-CSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEEC
T ss_pred             eEEcC-CCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEEC
Confidence            34444 555667789999999999999987      99999853

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.32  E-value=0.00067  Score=45.31  Aligned_cols=43  Identities=14%  Similarity=0.129  Sum_probs=33.9

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      ...+|.+..+|..  .+..|+.++|.|.+.+ +.+.++|++ ||..+
T Consensus         4 ~~~kP~i~~~P~~--~v~~G~~VtL~C~~~~-~~~~~~w~k-~g~~~   46 (242)
T 1p6f_A            4 TLPKPFIWAEPHF--MVPKEKQVTICCQGNY-GAVEYQLHF-EGSLF   46 (242)
T ss_dssp             CCCCCEEEEESCS--EEETTCCEEEEEECCT-TCCEEEEEE-TTEEE
T ss_pred             CCCCCEEEeeCCC--ccCCCCcEEEEEeeCC-CCcEEEEEE-CCCcc
Confidence            3568999999766  3567888999999987 568999997 66654

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=97.31  E-value=0.0011  Score=39.35  Aligned_cols=32  Identities=13%  Similarity=0.350  Sum_probs=26.9

Q ss_pred             CCCcEEecCCCCeEEEEEEccc-CCCeEEEEeC
Q psy11558         25 PPNRIDFSNTTGAQVECTARGS-PNPEIIWIRS   56 (74)
Q Consensus        25 Pp~~v~~~~g~~v~L~C~A~G~-P~P~I~W~~~   56 (74)
                      +|..+...+|++|+|.|.+.+. +.+.+.|++.
T Consensus         6 ~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~rq   38 (116)
T 1fo0_A            6 TQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQ   38 (116)
T ss_dssp             CCCEEEEETTCCEEECCEECCCCSSCEEEEEEE
T ss_pred             CCCcEEEecCCcEEEEeEecCCCCCeEEEEEEe
Confidence            3566678889999999999998 7789999874

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=97.30  E-value=0.00036  Score=45.35  Aligned_cols=35  Identities=20%  Similarity=0.435  Sum_probs=28.7

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeCC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRSD   57 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~d   57 (74)
                      +++| ..+.+..|++++|.|.+.|.|  .+.|.|++.+
T Consensus         4 l~qp-~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~   40 (227)
T 1mju_H            4 LQQP-GAELVKPGASVKLSCKASGYTFTNYWINWVKQR   40 (227)
T ss_dssp             EECC-SEEEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             EcCC-CCeEEcCCCCEEEEEEecCCccccceEEEEEeC
Confidence            4554 455678899999999999998  8999999854

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=97.30  E-value=0.00021  Score=47.35  Aligned_cols=34  Identities=12%  Similarity=0.324  Sum_probs=27.5

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~   56 (74)
                      +++|+ .+.+..|++++|.|.+.|.|  .|.|.|++.
T Consensus         4 l~~p~-~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~   39 (256)
T 1nqb_A            4 LQQSG-AELVKPGASVKLSCKASGYTFTSYWMHWVKQ   39 (256)
T ss_dssp             EEECC-CEEECTTCCEEEEEEECSSCGGGSCEEEEEE
T ss_pred             EECCC-CeeecCCCcEEEEEEeccccCCCceEEEEEE
Confidence            44544 45678899999999999997  789999985

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=97.29  E-value=0.00024  Score=45.31  Aligned_cols=27  Identities=15%  Similarity=0.345  Sum_probs=22.4

Q ss_pred             CCCeEEEEEE-cccCCCeEEEEeCCCeeec
Q psy11558         34 TTGAQVECTA-RGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        34 g~~v~L~C~A-~G~P~P~I~W~~~dG~~i~   62 (74)
                      +..+.|.|.| .| |.|+|+|++ ||.++.
T Consensus       115 ~~~v~L~C~~~~g-p~p~i~W~~-~~~~l~  142 (180)
T 2dru_A          115 CSNATLTCEVLEG-TDVELKLYQ-GKEHLR  142 (180)
T ss_dssp             GGGTEEEEECSSC-TTCEEEEEE-TTEEEE
T ss_pred             CCCEEEEEEeCCC-CCCEEEEEE-CCeECc
Confidence            4569999999 77 999999997 676664

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=97.29  E-value=0.00025  Score=48.45  Aligned_cols=35  Identities=14%  Similarity=0.415  Sum_probs=27.6

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeCC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRSD   57 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~d   57 (74)
                      +.+|+ .+.+..|+.+.|.|.+.|.|  .|.|+|++.+
T Consensus         4 l~~p~-~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~   40 (344)
T 1za6_B            4 LVQSG-AEVVKPGASVKISCKASGYTFTDHAIHWVKQN   40 (344)
T ss_dssp             EEECC-CEEECTTCCEEEEEEEESSCTTSSCEEEEEEC
T ss_pred             eeCCC-CeEEeCCCcEEEEEEcCCccccccEEEEEEEC
Confidence            44544 45678899999999999984  7999999853

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=97.28  E-value=0.00031  Score=46.09  Aligned_cols=38  Identities=11%  Similarity=0.238  Sum_probs=29.8

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEccc-CCCeEEEEeC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGS-PNPEIIWIRS   56 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~P~I~W~~~   56 (74)
                      .|.+++.| ..+.+.+|++++|.|.+.|. |.|.|.|++.
T Consensus       136 ~~~v~~~p-~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~  174 (259)
T 3omz_A          136 AQKVTQAQ-SSVSMPVRKAVTLNCLYETSWWSYYIFWYKR  174 (259)
T ss_dssp             -CEEECCC-CCEEEETTCCEEECCEEECCCSSCEEEEEEE
T ss_pred             CeeeEEeC-CEEEEcCCCCEEEEEECCCccCCceEEEeee
Confidence            45666664 45567788899999999996 8999999974

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=97.28  E-value=0.00018  Score=49.34  Aligned_cols=36  Identities=8%  Similarity=0.210  Sum_probs=27.9

Q ss_pred             cCCCcEEecCCCCeEEEEEEcccC-CCeEEEEeCCCe
Q psy11558         24 EPPNRIDFSNTTGAQVECTARGSP-NPEIIWIRSDGT   59 (74)
Q Consensus        24 ~Pp~~v~~~~g~~v~L~C~A~G~P-~P~I~W~~~dG~   59 (74)
                      .|+..+....|+.++|.|.|.|.| .|.|+|+++++.
T Consensus        11 ~p~~~v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~   47 (325)
T 1n26_A           11 VARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPA   47 (325)
T ss_dssp             CCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSS
T ss_pred             cCCCcEECCCCCcEEEEeCCCCCCCCceEEEEECCcc
Confidence            345555446888999999999876 899999985543

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=97.28  E-value=0.00032  Score=49.38  Aligned_cols=45  Identities=13%  Similarity=0.296  Sum_probs=31.7

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeCCCeeec
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRSDGTAVG   62 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~dG~~i~   62 (74)
                      ..+|.+...|+.... ..|..++|.|.|.|.+  .++|+|++ ||..+.
T Consensus       272 ~~~P~v~v~~~~~~~-~~g~~~~L~C~~~g~~P~~i~v~W~k-~g~~~~  318 (376)
T 2aty_A          272 PKAPQLYTIPPPKEQ-MAKDKVSLTCMITDFFPEDITVEWQW-NGQPAE  318 (376)
T ss_pred             CcCCeEEeeCCCHHH-hcCCceEEEEEEEEeECCCcEEEEEE-CCEECC
Confidence            456766666555432 2466799999999963  56999996 787664

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=97.28  E-value=0.00034  Score=45.60  Aligned_cols=34  Identities=18%  Similarity=0.371  Sum_probs=26.6

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~   56 (74)
                      +..++.. .+.+|++++|.|.+.|.|  .|.|.|++.
T Consensus       138 ~~~~~~~-~v~~G~~v~L~C~~~~~~~~~~~v~W~r~  173 (256)
T 3ux9_B          138 LVESGGG-LVQPGGSLRLSCAASGFTFSSYAMSWVRQ  173 (256)
T ss_dssp             EEEECCE-EECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             EEcCCCe-EEcCCCeEEEEEEEeCCcccccEEEEEEE
Confidence            3333444 367888999999999988  899999975

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=97.27  E-value=0.0004  Score=44.87  Aligned_cols=35  Identities=14%  Similarity=0.279  Sum_probs=28.7

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      +.+++. |..+.+..|++++|.| +.|.|.+.|.|++
T Consensus         3 ~~v~~~-p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r   37 (245)
T 4ei6_B            3 PKVLQI-PSHQIIDMGQMVTLNC-DPVSNHLYFYWYK   37 (245)
T ss_dssp             CCCEEE-CSEEEEETTCCEEEEE-ECCTTCCEEEEEE
T ss_pred             cceEeC-CceEEecCCCCEEEEE-EcCCCCCEEEEEE
Confidence            445666 4566678899999999 8899999999997

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=97.27  E-value=0.00023  Score=47.29  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=25.5

Q ss_pred             CCcEEecCCCCeEEEEE-EcccCCCeEEEEeCCCeee
Q psy11558         26 PNRIDFSNTTGAQVECT-ARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~-A~G~P~P~I~W~~~dG~~i   61 (74)
                      +..+....|..+.|.|. +.|+|.|+|+|.+ ||..+
T Consensus       121 ~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~-~~~~~  156 (308)
T 4fom_A          121 PDSLIDGGNETVAAICIAATGKPVAHIDWEG-DLGEM  156 (308)
T ss_dssp             SSCCCTTCSCEEEEEEEEEEEBSCCEEEECC-CSSBC
T ss_pred             cceeEEcCCceEEEEEEecCCcCCceEEEEE-CCccc
Confidence            33434455667999997 5799999999996 55544

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=97.27  E-value=0.00017  Score=47.94  Aligned_cols=32  Identities=13%  Similarity=0.352  Sum_probs=27.4

Q ss_pred             EecCCCCeEEEEEE------cccCCCeEEEEeCCCeeec
Q psy11558         30 DFSNTTGAQVECTA------RGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        30 ~~~~g~~v~L~C~A------~G~P~P~I~W~~~dG~~i~   62 (74)
                      .+..|+.+.|.|.+      .|+|.|+|+|++ ||.++.
T Consensus       114 ~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k-~~~~l~  151 (315)
T 1itb_B          114 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYK-DCKPLL  151 (315)
T ss_dssp             EEETTSCEEEECSSCTTTCTTTTCCCCCEEEE-TTEECC
T ss_pred             EEecCCCeEEEEecccccccCCCCCCEEEEEE-CCEECC
Confidence            45678889999999      999999999996 787764

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=97.27  E-value=0.00013  Score=48.16  Aligned_cols=33  Identities=18%  Similarity=0.334  Sum_probs=26.5

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeC
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRS   56 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~   56 (74)
                      .+|+.. .+..|++++|.|.|.|.|  .|.|.|++.
T Consensus         5 ~~p~~~-~v~~G~~v~L~C~~~g~p~~~~~v~W~k~   39 (257)
T 1f3r_B            5 LESGPG-LVRPSETLSLTCTVSGFSLTSFSVSWVRH   39 (257)
T ss_dssp             EEECCS-EECTTSEEEEEEEEESSCTTTSCCEEEEE
T ss_pred             ECCCCc-cccCCceEEEEEEEecccCCCccEEEEEe
Confidence            344444 477888999999999996  899999985

>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC I, secreted, immune system; 2.10A {Ctenopharyngodon idella} SCOP: b.1.1.0

Probab=97.26  E-value=0.00086  Score=39.82  Aligned_cols=29  Identities=17%  Similarity=0.388  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEEccc-CCC-eEEEEeCCCeeec
Q psy11558         33 NTTGAQVECTARGS-PNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        33 ~g~~v~L~C~A~G~-P~P-~I~W~~~dG~~i~   62 (74)
                      .|..++|.|.|.|- |.+ +|+|.+ ||+.+.
T Consensus        17 ~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~   47 (97)
T 3gbl_A           17 YGKENTLICYVSGFHPPDISIELLK-NGEVIA   47 (97)
T ss_dssp             TTCCEEEEEEEECCBSSCEEEEEEE-TTEECT
T ss_pred             CCCcEEEEEEEcceeCCccEEEEEE-CCccCc
Confidence            35569999999996 554 899996 788774

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=97.26  E-value=0.00021  Score=48.87  Aligned_cols=29  Identities=7%  Similarity=0.132  Sum_probs=24.6

Q ss_pred             ecCCCCeEEEEEEcccCCCeEEEEeCCCe
Q psy11558         31 FSNTTGAQVECTARGSPNPEIIWIRSDGT   59 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~P~I~W~~~dG~   59 (74)
                      +.+|+.+.|.|.+.|.|.|+|+|.++++.
T Consensus       108 v~~G~~v~l~C~~~~~p~~~v~W~~~~~~  136 (363)
T 1wio_A          108 LLQGQSLTLTLESPPGSSPSVQCRSPRGK  136 (363)
T ss_dssp             EESBSCEEEEEECCTTCCCCEEEECSSSC
T ss_pred             EecCCCEEEEEEcCCCCCCeEEEEcCCCc
Confidence            45788899999999999999999975443

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=97.26  E-value=0.00047  Score=45.11  Aligned_cols=37  Identities=16%  Similarity=0.319  Sum_probs=29.5

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEccc--CCCeEEEEeCC
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARGS--PNPEIIWIRSD   57 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~--P~P~I~W~~~d   57 (74)
                      .+++. |..+....|++++|.|.+.|.  +.+.|.|++.+
T Consensus         3 ~v~q~-p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~   41 (242)
T 1hxm_B            3 HLEQP-QISSTKTLSKTARLECVVSGITISATSVYWYRER   41 (242)
T ss_dssp             EEECC-CSEEEEETTCCEEEEEEEESSCTTTSCEEEEEEC
T ss_pred             ccCcC-CceEEecCCCcEEEEEEeCCccccCceEEEEEeC
Confidence            34454 566678889999999999997  78999999753

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=97.25  E-value=0.00016  Score=44.87  Aligned_cols=33  Identities=30%  Similarity=0.501  Sum_probs=27.5

Q ss_pred             cCCCcEEecCCCCeEEEEEEcccC----CCeEEEEeC
Q psy11558         24 EPPNRIDFSNTTGAQVECTARGSP----NPEIIWIRS   56 (74)
Q Consensus        24 ~Pp~~v~~~~g~~v~L~C~A~G~P----~P~I~W~~~   56 (74)
                      .|++.+.+..|+.+.|.|.+.|.|    .|.|+|.+.
T Consensus         5 ~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~   41 (214)
T 3jz7_A            5 TPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLIS   41 (214)
T ss_dssp             -CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEE
T ss_pred             cCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEec
Confidence            456677788899999999999998    689999873

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=97.25  E-value=0.00021  Score=46.63  Aligned_cols=33  Identities=15%  Similarity=0.454  Sum_probs=27.5

Q ss_pred             EcCCCcEEecCCCCeEEEEEEccc--CCCeEEEEeC
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGS--PNPEIIWIRS   56 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~--P~P~I~W~~~   56 (74)
                      .+|+ .+.+.+|++++|.|.+.|.  |.|.|.|++.
T Consensus         7 ~~p~-~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~   41 (256)
T 3ux9_B            7 TQPP-SVSGAPGQRVTISCSGSSSNIGSNYVSWYQQ   41 (256)
T ss_dssp             BCCS-EEEECTTCCEEEEEECCTTTTTTSCCEEEEE
T ss_pred             ecCC-cEEEcCCCcEEEEEecCCCCCCCceEEEEEE
Confidence            3444 4677889999999999998  8999999974

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=97.24  E-value=0.00017  Score=45.78  Aligned_cols=33  Identities=18%  Similarity=0.354  Sum_probs=26.1

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeC
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRS   56 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~   56 (74)
                      .+|+. +.+..|++++|.|.+.|.|  .|.|+|++.
T Consensus         5 ~~p~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~   39 (210)
T 3d9a_H            5 QESGP-SLVKPSQTLSLTCSVTGDSITSDYWSWIRK   39 (210)
T ss_dssp             EEESC-SEECTTSCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             ecCCC-EEecCCCcEEEEEEEecccCCCCcEEEEEe
Confidence            34443 4577888999999999987  499999875

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=97.24  E-value=0.00038  Score=43.04  Aligned_cols=35  Identities=14%  Similarity=0.323  Sum_probs=28.8

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      ..+++. |..+....|+.++|.|.+.|.  |.|.|++.
T Consensus        18 ~~v~q~-p~~~~v~~G~~v~L~C~~~~~--~~v~W~r~   52 (133)
T 3khq_A           18 SQIWQH-PRFAAKKRSSMVKFHCYTNHS--GALTWFRK   52 (133)
T ss_dssp             CSEEEE-CSEEEECTTCCEEEEEEESSS--SCEEEEEE
T ss_pred             CceEEc-CceEEEeCCCeEEEEEEeCCC--CEEEEEEe
Confidence            356666 455667889999999999998  99999985

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=97.24  E-value=0.00014  Score=47.30  Aligned_cols=39  Identities=10%  Similarity=0.236  Sum_probs=27.8

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEc---ccCCCeEEEEeCCC
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTAR---GSPNPEIIWIRSDG   58 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~---G~P~P~I~W~~~dG   58 (74)
                      +.++.. +..+.+.+|+++.|.|.+.   |.|.|.|+|++.++
T Consensus         6 ~~v~~~-~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~   47 (268)
T 3mj6_A            6 PGLTVS-SPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKD   47 (268)
T ss_dssp             -------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESS
T ss_pred             cccccC-CCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCC
Confidence            344555 4456678899999999999   99999999998544

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=97.23  E-value=0.00031  Score=44.79  Aligned_cols=35  Identities=20%  Similarity=0.345  Sum_probs=27.8

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeCC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRSD   57 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~d   57 (74)
                      +.+| ..+.+..|++++|.|.+.|.|  .|.|.|++.+
T Consensus         4 v~~p-~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~   40 (220)
T 1pz5_B            4 VEES-GGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQS   40 (220)
T ss_dssp             EEEE-CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEE
T ss_pred             Eecc-CCEEEcCCCeEEEEEEEcCCccCCccEEEEEeC
Confidence            3444 345677888999999999988  8999999853

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=97.22  E-value=0.0001  Score=47.21  Aligned_cols=39  Identities=10%  Similarity=0.290  Sum_probs=27.8

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccC-CC-eEEEEeCC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSP-NP-EIIWIRSD   57 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P-~P-~I~W~~~d   57 (74)
                      ..+.+++ | ..+.+..|++++|.|.+.|.| .| .|+|++.+
T Consensus        19 ~~~~v~~-p-~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~   59 (234)
T 2j6e_L           19 AQSVLTQ-P-PSASGTPGQRVTISCSGSSSNIGSNYVYWYQQL   59 (234)
T ss_dssp             -CCCCBC-C-SCCCBCTTCEEEEEEECCTTTTTTSCCEEEEEC
T ss_pred             cccEEeC-C-CcEEeeCCCcEEEEEEecCCCCCCCeEEEEEec
Confidence            3444555 4 444567888999999999975 45 79999753

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=97.21  E-value=0.0006  Score=40.74  Aligned_cols=43  Identities=23%  Similarity=0.563  Sum_probs=32.6

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccC----CCeEEEEeCC---Ceee
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSP----NPEIIWIRSD---GTAV   61 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P----~P~I~W~~~d---G~~i   61 (74)
                      +-.++..| ..+.+..|++++|.|.+++.+    .+.|.|++.+   |..+
T Consensus         7 ~~~~v~~p-~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~g~~~   56 (120)
T 3noi_A            7 GALWVSQP-PEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEV   56 (120)
T ss_dssp             CBCCEECC-SEEEEETTSCEEECCEECCCTTSCCCEEEEEEESSCSTTCBC
T ss_pred             EEEEEcCC-CEEEEEcCCCEEEEeeecCCCCCCceeEEEEEeccCCCCcee
Confidence            33456665 466778899999999999887    6789999875   5544

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=97.21  E-value=0.00019  Score=41.45  Aligned_cols=36  Identities=28%  Similarity=0.465  Sum_probs=28.1

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCC----eEEEEeCC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNP----EIIWIRSD   57 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P----~I~W~~~d   57 (74)
                      +..++..+....|++++|.|.+.+.|.+    .|.|++.+
T Consensus         8 v~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~   47 (126)
T 1eaj_A            8 ITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISP   47 (126)
T ss_dssp             ESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEE
T ss_pred             EECCCceEEEEeCCCEEEEEEEecCCCCCCceEEEEEEeC
Confidence            3345566777889999999999998764    59999854

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=97.20  E-value=0.00058  Score=42.29  Aligned_cols=35  Identities=14%  Similarity=0.320  Sum_probs=28.3

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEccc--CCCeEEEEeC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGS--PNPEIIWIRS   56 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~--P~P~I~W~~~   56 (74)
                      .++. |..+...+|++++|.|.+++.  |.+.+.|++.
T Consensus         3 V~Q~-p~~v~v~~G~svtL~C~~s~~~~~~~~v~Wyrq   39 (126)
T 3moq_A            3 VDQT-PRTATKETGESLTINCVLRDASFELKDTGWYRT   39 (126)
T ss_dssp             EEEE-CSEEEEETTCCEEEEEEEESCSSCCCEEEEEEE
T ss_pred             eEEC-CceEEEeCCCCEEEEEEeecCccCCceEEEEEe
Confidence            3455 566678889999999999987  6889999984

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=97.20  E-value=0.00034  Score=45.21  Aligned_cols=34  Identities=12%  Similarity=0.356  Sum_probs=27.9

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      .+++. |..+.+..|++++|.|.+.| |.|.|+|++
T Consensus         4 ~v~~~-p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k   37 (240)
T 3q5y_A            4 GVVQS-PRHIIKEKGGRSVLTCIPIS-GHSNVVWYQ   37 (240)
T ss_dssp             CCEEE-CSEEEEETTCCEEEEEECCT-TCCEEEEEE
T ss_pred             ccccC-cceeeecCCCcEEEEEEeCC-CCceEEEEE
Confidence            34455 56667788999999999998 999999997

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=97.20  E-value=0.00039  Score=50.14  Aligned_cols=41  Identities=15%  Similarity=0.332  Sum_probs=31.3

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeE----EEEeC-CCe
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEI----IWIRS-DGT   59 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I----~W~~~-dG~   59 (74)
                      +|.+... +..+....|+.+.|.|.|.|.|.|.+    +|.+. ||.
T Consensus       331 ~p~~~~~-~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~  376 (585)
T 2ocw_A          331 ESTIPRS-PTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGR  376 (585)
T ss_pred             ccccccC-CcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCC
Confidence            4555554 45556678888999999999999998    89863 565

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=97.20  E-value=0.00056  Score=44.99  Aligned_cols=37  Identities=14%  Similarity=0.278  Sum_probs=28.7

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      .+|.+++.| ..+.+..|.+++|.|.+.|. .|.|+|++
T Consensus       136 ~~~~v~~~p-~~~~v~~G~~v~L~C~~~~~-~~~v~W~k  172 (256)
T 3tf7_C          136 SEAAVTQSP-RNKVTVTGENVTLSCRQTNS-HNYMYWYR  172 (256)
T ss_dssp             --CCEEESC-SEEEEETTCCEEECEEECSC-CSEEEEEE
T ss_pred             CccEEEecC-CEEEEeCCCcEEEEEEcCCC-ceEEEEEE
Confidence            456677764 55556688899999999998 89999997

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=97.19  E-value=0.00054  Score=39.41  Aligned_cols=34  Identities=12%  Similarity=0.271  Sum_probs=26.7

Q ss_pred             EEcCCCcEEecCCCCeEEEEEE-cccCCCe----EEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTA-RGSPNPE----IIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A-~G~P~P~----I~W~~~   56 (74)
                      ++.|++ +....|++++|.|.+ .+.|.+.    |.|++.
T Consensus         4 v~~p~~-v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~   42 (118)
T 3udw_C            4 VQAPTQ-VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARH   42 (118)
T ss_dssp             EECCSE-EEEETTSCEEECCEEECCTTCCCEEEEEEEEET
T ss_pred             EeCCCe-EEEeeCCcEEEEEEeECCCCCCCceEEEEEEEc
Confidence            455555 777889999999999 6677665    999985

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=97.18  E-value=0.0016  Score=38.43  Aligned_cols=34  Identities=18%  Similarity=0.411  Sum_probs=27.1

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEccc-CCCeEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGS-PNPEIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~-P~P~I~W~~~   56 (74)
                      ++. |..+...+|++|+|.|.+++. +.+.|.|++.
T Consensus         4 ~q~-p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~r~   38 (116)
T 1tvd_A            4 TQS-SPDQTVASGSEVVLLCTYDTVYSNPDLFWYRI   38 (116)
T ss_dssp             ECC-SCCEEEETTCCEEECCEEECCSSSCCEEEEEE
T ss_pred             ecC-CCcEEEecCCeEEEEeEeEcCCCCcEEEEEEe
Confidence            344 555667889999999999876 6789999874

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=97.18  E-value=0.0004  Score=44.16  Aligned_cols=36  Identities=11%  Similarity=0.106  Sum_probs=28.4

Q ss_pred             CCCcEEecCCCCeEEEEEEcc-cCCCeEEEEeCCCeee
Q psy11558         25 PPNRIDFSNTTGAQVECTARG-SPNPEIIWIRSDGTAV   61 (74)
Q Consensus        25 Pp~~v~~~~g~~v~L~C~A~G-~P~P~I~W~~~dG~~i   61 (74)
                      .|..+....|++|.|.|.+.+ .|.|.|+|++ +|..+
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~-~~~~i   40 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLF-NETSL   40 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEE-TTEEE
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEE-CCEEE
Confidence            356667788999999999986 5678999997 46544

>3c5j_A HLA class II histocompatibility antigen, DR alpha; HLA, MHC class II, glycoprotein, immune response, membrane, transmembrane, GTP-binding, methylation; HET: NAG; 1.80A {Homo sapiens} PDB: 1d5x_A* 1d5z_A* 1d6e_A* 1d5m_A 1fyt_A* 1hqr_A 1j8h_A* 1r5i_A 1seb_A 1zgl_A 2seb_A* 1fv1_A* 2ipk_A* 3pdo_A 3pgc_A 3pgd_A 1ymm_A* 1aqd_A 2g9h_A* 1h15_A ...

Probab=97.17  E-value=0.00099  Score=43.48  Aligned_cols=43  Identities=16%  Similarity=0.351  Sum_probs=29.9

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~   62 (74)
                      .+|.....++...  ..+..++|.|.|.| .|++ +|+|.+ ||+.+.
T Consensus        85 ~~P~v~v~~~~~~--~~~~~~~L~C~a~gFyP~~i~v~W~k-~g~~~~  129 (181)
T 3c5j_A           85 VPPEVTVLTNSPV--ELREPNVLICFIDKFTPPVVNVTWLR-NGKPVT  129 (181)
T ss_dssp             BCCEEEEEESSCC--CTTSCEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             cCCceecccCChh--hcCCCCeEEEEEeEEECCCCEEEEEE-CCEECC
Confidence            4565555444322  34556999999999 6764 899996 888874

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=97.17  E-value=0.00033  Score=45.27  Aligned_cols=34  Identities=12%  Similarity=0.136  Sum_probs=27.2

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeCC
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRSD   57 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~d   57 (74)
                      .+|+. +.+..|++++|.|.+.|.|  .+.|.|++.+
T Consensus         5 ~qp~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~   40 (225)
T 1op3_H            5 VESGG-GLVKAGGSLILSCGVSNFRISAHTMNWVRRV   40 (225)
T ss_dssp             EEECC-EEEETTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             EcCCC-eEecCCCCEEEEEEecCcccCCceEEEEEeC
Confidence            44444 4577888999999999988  8999998754

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=97.16  E-value=0.001  Score=44.25  Aligned_cols=31  Identities=19%  Similarity=0.352  Sum_probs=25.0

Q ss_pred             CCcEEecCC---CCeEEEEE-EcccCCCeEEEEeC
Q psy11558         26 PNRIDFSNT---TGAQVECT-ARGSPNPEIIWIRS   56 (74)
Q Consensus        26 p~~v~~~~g---~~v~L~C~-A~G~P~P~I~W~~~   56 (74)
                      +..+....|   ..+.|.|. +.|.|.|+|+|.++
T Consensus       139 ~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~  173 (331)
T 3u83_A          139 QAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETR  173 (331)
T ss_dssp             SSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEES
T ss_pred             CCceeecCCCccceEEEEEEecCCcCCceEEEEcC
Confidence            445556666   55999997 99999999999974

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.15  E-value=0.00072  Score=45.79  Aligned_cols=41  Identities=20%  Similarity=0.260  Sum_probs=29.9

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      ..|.+...|...  +.+|+.++|.|.|.|.| +++.|.+ ||..+
T Consensus       106 ~~P~l~~~p~~~--V~~G~~vtL~C~~~~~~-~~~~w~k-~g~~~  146 (257)
T 1b6u_A          106 EKPSLSAQPGPT--VLAGESVTLSCSSRSSY-DMYHLSR-EGEAH  146 (257)
T ss_dssp             CCCEEECSSCTT--CBTTCEEEEEEECSSCC-SEEEEEE-TTSSC
T ss_pred             CCcceEccCCCc--cCCCCEEEEEEeCCCCC-cEEEEEE-CCccc
Confidence            356666665433  46788899999999965 8999997 55544

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=97.14  E-value=0.00037  Score=43.48  Aligned_cols=28  Identities=4%  Similarity=0.116  Sum_probs=24.3

Q ss_pred             EecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558         30 DFSNTTGAQVECTARGSPNPEIIWIRSD   57 (74)
Q Consensus        30 ~~~~g~~v~L~C~A~G~P~P~I~W~~~d   57 (74)
                      .+..|+.+.|.|.+.|.|.+.|+|++.+
T Consensus        10 ~v~~G~~v~L~C~~~~~~~~~v~W~~~~   37 (208)
T 3r4d_A           10 QVAEDNNVLLLVHNLPLALGAFAWYKGN   37 (208)
T ss_dssp             EEETTCCEEEEEECCCSSCSEEEEEESS
T ss_pred             eeecCCcEEEEEeCCCCCceEEEeccCC
Confidence            3567889999999999999999999753

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=97.14  E-value=0.0025  Score=37.68  Aligned_cols=31  Identities=23%  Similarity=0.430  Sum_probs=25.9

Q ss_pred             CCcEEecCCCCeEEEEEEccc-CCCeEEEEeC
Q psy11558         26 PNRIDFSNTTGAQVECTARGS-PNPEIIWIRS   56 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~-P~P~I~W~~~   56 (74)
                      |..+...+|++++|.|.+.+. +.+.|.|++.
T Consensus         8 p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~rq   39 (115)
T 2otu_A            8 SSSASFSLGASAKLTCTLSSQHSTYTIEWYQQ   39 (115)
T ss_dssp             CCCEECCTTCCEEEEEEECGGGTTCCEEEEEE
T ss_pred             CCCEEECCCCCEEEEEEecCCCCCeEEEEEEe
Confidence            345667889999999999987 7899999874

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=97.13  E-value=0.00033  Score=44.72  Aligned_cols=34  Identities=15%  Similarity=0.289  Sum_probs=26.8

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeCC
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRSD   57 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~d   57 (74)
                      .+|+. +.+..|++++|.|.+.|.|  .|.|.|++.+
T Consensus         5 ~~p~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~   40 (222)
T 1q9r_B            5 VESGG-GLVQSGGSLRLSCATSGFTFTDYYMSWVRQP   40 (222)
T ss_dssp             EEECC-CEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             ecCCc-eeEcCCCEEEEEEEecCccCCCCcEEEEEEC
Confidence            44443 4567888999999999987  8999999753

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=97.13  E-value=0.00035  Score=41.23  Aligned_cols=31  Identities=13%  Similarity=0.321  Sum_probs=26.7

Q ss_pred             CCcEEecCCCCeEEEEEEc-ccCCCeEEEEeC
Q psy11558         26 PNRIDFSNTTGAQVECTAR-GSPNPEIIWIRS   56 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~-G~P~P~I~W~~~   56 (74)
                      |..+...+|++|+|.|.++ +.+.+.|.|++.
T Consensus         6 p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~rq   37 (111)
T 2qhl_A            6 LHVKTVKRGENVTMECSMSKVKDKDKLAWYRQ   37 (111)
T ss_dssp             CEEEECCTTCCEEECCBCTTCSCGGGEEEEEE
T ss_pred             CceEEEeCCCCEEEEEEccCCcccceEEEEEe
Confidence            4556678899999999999 999999999874

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=97.13  E-value=0.00058  Score=45.03  Aligned_cols=36  Identities=19%  Similarity=0.464  Sum_probs=28.7

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      ...+++. |..+.+..|++++|.|.+.+ |.+.|.|++
T Consensus        27 ~~~v~~~-p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k   62 (270)
T 3qib_D           27 GMKVIQT-PRYLVKGQGQKAKMRCIPEK-GHPVVFWYQ   62 (270)
T ss_dssp             -CCCEEE-CSEEEEETTSCEEEEEECCT-TCCEEEEEE
T ss_pred             ceeEEeC-CCeEEEcCCCCEEEEEEecC-CCceEEEEE
Confidence            3455555 56667888999999999987 889999987

>3c5j_B MHC class II antigen; HLA, MHC class II, glycoprotein, immune response, membrane, transmembrane, GTP-binding, methylation; HET: NAG; 1.80A {Homo sapiens} PDB: 2q6w_B 1a6a_B* 1d5m_B* 1j8h_B* 1d5z_B* 1d5x_B* 1d6e_B* 2seb_B* 2wbj_B* 1ymm_B* 3l6f_B* 3s4s_B 3s5l_B 1fyt_B* 1seb_B 1bx2_B* 1zgl_B 1fv1_B 1h15_B* 1hqr_B ...

Probab=97.13  E-value=0.00062  Score=44.22  Aligned_cols=44  Identities=20%  Similarity=0.435  Sum_probs=28.6

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~   62 (74)
                      ..+|.....++...  ..+..++|.|.|.| .|++ +|+|.+ ||+.+.
T Consensus        94 ~~~P~v~v~~~~~~--~~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~  139 (190)
T 3c5j_B           94 RVHPQVTVYPAKTQ--PLQHHNLLVCSVSGFYPGSIEVRWFR-NGQEEK  139 (190)
T ss_dssp             CBCCEEEEEEEC-------CCCEEEEEEEEEBSSCCEEEEEE-TTEECS
T ss_pred             ccCceEEEEeCCcc--ccCCceEEEEEEeeEECCceEEEEEE-CCeEcC
Confidence            34566555543332  23456899999999 5765 999996 888764

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=97.13  E-value=0.00032  Score=46.06  Aligned_cols=31  Identities=16%  Similarity=0.373  Sum_probs=27.3

Q ss_pred             CCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         25 PPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        25 Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      +|..+.+..|++++|.|.+.+.|.+.|.|++
T Consensus         7 ~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r   37 (253)
T 3to4_D            7 NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQ   37 (253)
T ss_dssp             ECSEEEEESSCCEEEEEECSCTTCCCEEEEE
T ss_pred             CCCeEEEeCCCcEEEEEEeCCCCcceEEEEE
Confidence            3566677889999999999999999999987

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=97.13  E-value=0.00047  Score=40.46  Aligned_cols=32  Identities=19%  Similarity=0.460  Sum_probs=26.5

Q ss_pred             CCcEEecCCCCeEEEEE-EcccC-CCeEEEEeCC
Q psy11558         26 PNRIDFSNTTGAQVECT-ARGSP-NPEIIWIRSD   57 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~-A~G~P-~P~I~W~~~d   57 (74)
                      |..+...+|++++|.|. +++.| .+.|.|++.+
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~r~~   40 (109)
T 1pew_A            7 PHSVSESPGKTVTISCTRSSGNIASNYVQWYQQR   40 (109)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEC-
T ss_pred             CCCEEEcCCCCEEEEEEeCCCCCCCccEEEEEEC
Confidence            35667889999999999 99887 6899999865

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=97.12  E-value=0.00054  Score=44.19  Aligned_cols=33  Identities=18%  Similarity=0.262  Sum_probs=26.9

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeC
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRS   56 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~   56 (74)
                      .+|+. +.+..|++++|.|.+.|.|  .+.|.|++.
T Consensus         5 ~q~~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~   39 (220)
T 2fbj_H            5 LESGG-GLVQPGGSLKLSCAASGFDFSKYWMSWVRQ   39 (220)
T ss_dssp             EEECC-EEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             ecCCC-eEecCCCcEEEEEEecCccCCCceEEEEEE
Confidence            44444 5678899999999999987  799999875

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=97.11  E-value=0.00064  Score=47.71  Aligned_cols=28  Identities=18%  Similarity=0.572  Sum_probs=23.4

Q ss_pred             cCCCCeEEEEEEccc-CCC-eEEEEeCCCee
Q psy11558         32 SNTTGAQVECTARGS-PNP-EIIWIRSDGTA   60 (74)
Q Consensus        32 ~~g~~v~L~C~A~G~-P~P-~I~W~~~dG~~   60 (74)
                      ..|+.++|.|.|.|. |.| +|+|++ ||..
T Consensus       132 ~~G~~v~L~C~~~g~~P~p~~v~W~k-~~~~  161 (434)
T 1igy_B          132 QTNSMVTLGCLVKGYFPEPVTVTWNS-GSLS  161 (434)
T ss_dssp             CCTTEEEEEEEEEEEBSSCCEEEETT-TTBC
T ss_pred             CCCCcEEEEEEEeeecCCCeEEEEee-CCcC
Confidence            567789999999997 888 999986 5654

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=97.10  E-value=0.00055  Score=44.82  Aligned_cols=34  Identities=9%  Similarity=0.337  Sum_probs=26.7

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~   56 (74)
                      +.+|+. +.+.+|++++|.|.+.|.|  .|.|.|++.
T Consensus         6 v~~~~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~   41 (256)
T 3umt_A            6 LQQSGL-ELVKPGASVKISCKTSGYTFTEYTMHWVKQ   41 (256)
T ss_dssp             EEECCC-EEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             EEccCc-eEEcCCCCEEEEEEEecccccccEEEEEEE
Confidence            334444 4578899999999999987  899999873

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=97.09  E-value=0.00037  Score=46.89  Aligned_cols=42  Identities=17%  Similarity=0.375  Sum_probs=27.3

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEccc-CCC-eEEEEeCCCeee
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGS-PNP-EIIWIRSDGTAV   61 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~P-~I~W~~~dG~~i   61 (74)
                      +|.....++... ...|..++|.|.|.|. |.| +|+|.+ ||..+
T Consensus       129 ~P~v~~~~p~~~-v~~g~~v~L~C~~~g~~P~~i~v~W~k-~g~~~  172 (261)
T 2xqy_G          129 APSVYPLAPVCG-DTTGSSVTLGCLVKGYFPEPVTLTWNS-GSLSS  172 (261)
T ss_dssp             CCEEEEECCCCC---CCSEEEEEEEEEEEBSSCCEEEEGG-GTCCT
T ss_pred             CCeEEEeCCCcc-ccCCCcEEEEEEEEeEeCCCCEEEEec-CCCcC
Confidence            354443333321 3457789999999995 888 999986 56543

>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain, histocompatibi antigen, immune system; HET: 16A; 1.32A {Gallus gallus} SCOP: b.1.1.0 PDB: 3p77_B* 4g43_B 4g42_B 4e0r_B 3bev_B 3bew_B 3jvg_C* 2yez_B 2yf5_B 2yf6_B 2yf1_B*

Probab=97.08  E-value=0.0016  Score=38.81  Aligned_cols=29  Identities=28%  Similarity=0.483  Sum_probs=22.5

Q ss_pred             CCCCeEEEEEEcccCCC--eEEEEeCCCeeec
Q psy11558         33 NTTGAQVECTARGSPNP--EIIWIRSDGTAVG   62 (74)
Q Consensus        33 ~g~~v~L~C~A~G~P~P--~I~W~~~dG~~i~   62 (74)
                      .|..++|.|.|.|--++  +|+|.+ ||+.+.
T Consensus        17 ~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~   47 (99)
T 3p73_B           17 AGTKNVLNCFAAGFHPPKISITLMK-DGVPME   47 (99)
T ss_dssp             TTSCEEEEEEEEEESSSCCEEEEEE-TTEECT
T ss_pred             CCCCEEEEEEEeeeECCCeEEEEEE-CCeeCC
Confidence            35569999999996443  899996 788763

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=97.08  E-value=0.00061  Score=44.50  Aligned_cols=42  Identities=17%  Similarity=0.211  Sum_probs=31.4

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCC-CeEEEEeCCCeee
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPN-PEIIWIRSDGTAV   61 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~-P~I~W~~~dG~~i   61 (74)
                      +|.+...|... .+..|+.+.|.|.|.|.|. +.+.|.+ ||..+
T Consensus       186 ~p~i~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~~~w~~-~~~~~  228 (292)
T 4dkd_C          186 PPALTLVPAEL-VRIRGEAAQIVCSASSVDVNFDVFLQH-NNTKL  228 (292)
T ss_dssp             SCEEEEESSCB-CCCSSSCEEEEEEEEESSSCCEEECCB-SSCCC
T ss_pred             CCeEEccCCce-eEecCCCEEEEEEecCCCCceEEEEeC-CCccc
Confidence            78888876544 3457888999999999885 5688875 56544

>1uvq_B HLA class II histocompatibility antigen; immunology, MHC class II, diabetes, narcolepsy, autoimmune disease, structural proteomics in europe, spine, structural genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 3pl6_B* 1jk8_B* 2nna_B 1s9v_B 2iad_B 1muj_B* 1d9k_D* 1iak_B* 1jl4_B 1f3j_B* 2pxy_D 1k2d_B* 1u3h_D 2z31_D 3mbe_B* 1aqd_B 3pdo_B 3pgc_B 3pgd_B 1klu_B ...

Probab=97.06  E-value=0.00086  Score=43.94  Aligned_cols=43  Identities=14%  Similarity=0.357  Sum_probs=26.7

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~   62 (74)
                      .+|.....++...  ..+..++|.|.|.| .|++ +|+|.+ ||+.+.
T Consensus        93 ~~P~V~v~~~~~~--~~~~~~~L~C~v~gFyP~~i~v~W~~-~g~~~~  137 (198)
T 1uvq_B           93 VEPTVTISPSRTE--ALNHHNLLVCSVTDFYPGQIKVRWFR-NDQEET  137 (198)
T ss_dssp             BCCEEEEEEC----------CEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             ccceEEEEecCcc--cCCCCcEEEEEEeeEeCCceEEEEEE-CCEecc
Confidence            4676665544332  23456999999999 5765 899996 788763

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=97.06  E-value=0.00057  Score=45.53  Aligned_cols=34  Identities=15%  Similarity=0.358  Sum_probs=26.5

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccCC--CeEEEEeCC
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSPN--PEIIWIRSD   57 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P~--P~I~W~~~d   57 (74)
                      ..++.. .+..|+.++|.|.+.|.|.  |.|.|++.+
T Consensus       143 ~~~~~~-~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~  178 (264)
T 2gjj_A          143 QQSGPE-VVKTGASVKISCKASGYSFTGYFINWVKKN  178 (264)
T ss_dssp             EECCCE-EECTTCCEEEEEEEESSCGGGSEEEEEEEC
T ss_pred             eCCCCE-EEcCCCcEEEEEEEeCCccCCeEEEEEEEC
Confidence            333444 4678889999999999985  999999853

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.06  E-value=0.0005  Score=46.58  Aligned_cols=41  Identities=12%  Similarity=0.197  Sum_probs=31.7

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCee
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTA   60 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~   60 (74)
                      ..+|.+...|. . .+..|+.++|.|.+.+ +.+.++|+| ||..
T Consensus         5 ~~kP~i~~~P~-~-~V~~G~~VtL~C~~~~-~~~~~~W~k-~g~~   45 (257)
T 1b6u_A            5 HRKPSLLAHPG-P-LVKSEETVILQCWSDV-RFQHFLLHR-EGKF   45 (257)
T ss_dssp             CCCCEECCBSC-S-EEESSCCEEEEEEESS-CCSEEEEEE-ESTT
T ss_pred             CCCCEEEEcCC-C-EecCCCCEEEEEecCC-CCcEEEEEE-CCCC
Confidence            46788888865 3 3567888999999986 689999997 5543

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=97.06  E-value=4.2e-05  Score=49.43  Aligned_cols=33  Identities=21%  Similarity=0.438  Sum_probs=25.5

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcccCC---CeEEE
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARGSPN---PEIIW   53 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~---P~I~W   53 (74)
                      ++++. |..+.+..|++++|.|.|.|.+.   ++|+|
T Consensus         6 v~~~~-P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W   41 (214)
T 1ow0_A            6 LSLHR-PALEDLLLGSEANLTCTLTGLRDASGVTFTW   41 (214)
T ss_dssp             CEEEC-CCHHHHHHCSSCCCEEEETTCCSCCCCCCCB
T ss_pred             EEEEC-cChHHhccCCCcEEEEEEeeeECCCCeEEEE
Confidence            34554 55555678889999999999865   79999

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=97.06  E-value=0.00069  Score=39.98  Aligned_cols=32  Identities=19%  Similarity=0.491  Sum_probs=26.4

Q ss_pred             CCcEEecCCCCeEEEEEEccc-CCCeEEEEeCC
Q psy11558         26 PNRIDFSNTTGAQVECTARGS-PNPEIIWIRSD   57 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~-P~P~I~W~~~d   57 (74)
                      |..+...+|++++|.|.+++. +.+.|.|++.+
T Consensus         5 p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~r~~   37 (115)
T 2atp_B            5 PSSLLVQTNHTAKMSCEVKSISKLTSIYWLRER   37 (115)
T ss_dssp             CSEEEECTTSCEEEEEECCSSCCSSEEEEEEEE
T ss_pred             CCCEEEcCCCcEEEEEEecCCCCcccEEEEEeC
Confidence            456667889999999999986 68899998753

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=97.06  E-value=0.00065  Score=45.68  Aligned_cols=37  Identities=14%  Similarity=0.360  Sum_probs=29.7

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeCC
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRSD   57 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~d   57 (74)
                      ..+++|+ .+.+..|++++|.|.+.|.|  .+.|.|++.+
T Consensus         8 ~~~~~p~-~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~   46 (261)
T 2xqy_G            8 VQLQQPG-AELVKPGASVKMSCKASGYSFTSYWMNWVKQR   46 (261)
T ss_dssp             CEEECCS-EEEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             eeEECCC-CEEEcCCCCEEEEEEeCCcccCCceEEEEEeC
Confidence            3455654 55688899999999999998  7999998754

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=97.06  E-value=0.00055  Score=45.71  Aligned_cols=35  Identities=11%  Similarity=0.302  Sum_probs=28.1

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCC-----eEEEEeC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNP-----EIIWIRS   56 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P-----~I~W~~~   56 (74)
                      +++.| ..+....|++++|.|.+.|.|.|     .|+|.++
T Consensus         3 vv~~P-~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~   42 (313)
T 4fqp_A            3 VVQAP-TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARH   42 (313)
T ss_dssp             EEECC-SEECCBTTSCEEECCEEECCTTSCCCCCEEEEEET
T ss_pred             EEcCC-CEEEEecCCCEEEEEEEECCCCCccceEEEEEEEC
Confidence            45664 55667788899999999999988     4999974

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=97.03  E-value=0.0026  Score=41.35  Aligned_cols=32  Identities=25%  Similarity=0.374  Sum_probs=27.1

Q ss_pred             CCCcEEecCCCCeEEEEEEccc--CCCeEEEEeC
Q psy11558         25 PPNRIDFSNTTGAQVECTARGS--PNPEIIWIRS   56 (74)
Q Consensus        25 Pp~~v~~~~g~~v~L~C~A~G~--P~P~I~W~~~   56 (74)
                      +|..+....|++++|.|.+.|.  +.+.|.|++.
T Consensus         7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~   40 (230)
T 1ypz_F            7 PEISISRPRDETAQISCKVFIESFRSVTIHWYRQ   40 (230)
T ss_dssp             SCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEE
T ss_pred             cCCEEEEeCCCcEEEEEEeeccccCccEEEEEEE
Confidence            4566678889999999999996  7899999875

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=97.02  E-value=0.0023  Score=37.66  Aligned_cols=33  Identities=21%  Similarity=0.478  Sum_probs=26.3

Q ss_pred             EcCCCcEEecCCCCeEEEEEEccc---CCCeEEEEeC
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGS---PNPEIIWIRS   56 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~---P~P~I~W~~~   56 (74)
                      .+|+ .+...+|++++|.|.+.+.   +.+.|.|++.
T Consensus         3 ~q~~-~~~~~~G~~v~L~C~~~~~~~~~~~~v~W~rq   38 (116)
T 3bj9_1            3 HQPP-AMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQ   38 (116)
T ss_dssp             ECCS-EEEEETTCCEEEEEEECSSSCGGGCCEEEEEE
T ss_pred             ecCC-cEEEcCCCcEEEEEEeecCccCCCceEEEEEe
Confidence            3455 4678889999999999875   6789999874

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=97.01  E-value=0.0026  Score=40.07  Aligned_cols=35  Identities=23%  Similarity=0.473  Sum_probs=29.1

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      .++. |..+...+|++++|.|.+++.+.+.|.|++.
T Consensus         3 v~Q~-p~~v~v~~G~~vtL~C~~s~~~~~~v~Wyrq   37 (143)
T 3u6r_L            3 LTQS-PATLSLSPGERATLSCRASQSVNKYLAWYQQ   37 (143)
T ss_dssp             EEEE-CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             EEEC-CCEEEEeCCCCEEEEEEECCCCceeeEEEEE
Confidence            3455 5666788999999999999998899999984

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=97.01  E-value=0.0014  Score=43.81  Aligned_cols=41  Identities=17%  Similarity=0.294  Sum_probs=30.3

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      .+|.+...|...  +..|+.++|.|.|.+ |.|.++|.+ ||..+
T Consensus       218 ~~p~i~~~~~~~--v~~G~~v~L~C~~~~-~~~~~~W~k-~g~~~  258 (316)
T 3vh8_G          218 EKPSLSAQPGPK--VQAGESVTLSCSSRS-SYDMYHLSR-EGGAH  258 (316)
T ss_dssp             CCCEEEEESCSC--CCTTSCCEEEEEESS-CCSEEEEEE-TTSSC
T ss_pred             CCCeEEeCCCCe--ecCCCcEEEEEECCC-CCcEEEEEE-CCCcC
Confidence            456666665432  467888999999985 889999997 56543

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N

Probab=97.01  E-value=0.00074  Score=41.22  Aligned_cols=36  Identities=22%  Similarity=0.377  Sum_probs=27.8

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEccc--CCCeEEEEeCC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGS--PNPEIIWIRSD   57 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~--P~P~I~W~~~d   57 (74)
                      +++. |..+...+|++|+|.|.+++.  +.+.|.|++.+
T Consensus         3 v~Q~-p~~v~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~   40 (121)
T 2i24_N            3 VDQT-PQRITKETGESLTINCVVRDSRCVLSTGYWYRKP   40 (121)
T ss_dssp             EEEE-CSEEEEETTCCEEEEEEECSCCCCEEEEEEEEEC
T ss_pred             cEEC-CcEEEEecCCcEEEEeEccCCCCCCCEEEEEEeC
Confidence            3455 455667889999999999987  46789999753

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=97.01  E-value=0.00036  Score=45.85  Aligned_cols=37  Identities=16%  Similarity=0.280  Sum_probs=28.5

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      ..+.+++. +..+.+..|++++|.|.+. .|.+.|+|++
T Consensus        25 ~~~~v~~~-p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r   61 (268)
T 3pl6_D           25 GGAGVSQT-PSNKVTEKGKYVELRCDPI-SGHTALYWYR   61 (268)
T ss_dssp             --SSCBCC-CSEEEEETTCCEEEEEBCB-TTCCEEEEEE
T ss_pred             cCceeEeC-CCEEEecCCCCEEEEEEeC-CCCceEEEEE
Confidence            34455555 5666778899999999998 6999999998

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=97.00  E-value=0.00063  Score=47.88  Aligned_cols=39  Identities=23%  Similarity=0.437  Sum_probs=27.4

Q ss_pred             eEEEcCCCcEE-ecCCCCeEEEEEEccc-CCC---eEEEEeCCCe
Q psy11558         20 IFIKEPPNRID-FSNTTGAQVECTARGS-PNP---EIIWIRSDGT   59 (74)
Q Consensus        20 ~fv~~Pp~~v~-~~~g~~v~L~C~A~G~-P~P---~I~W~~~dG~   59 (74)
                      +|+.. ++... +..|++++|.|.|.|. |.|   +|+|+++++.
T Consensus       169 v~~~~-p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~  212 (376)
T 2aty_A          169 VFIFP-PKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVE  212 (376)
T ss_pred             EEEeC-cCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCcc
Confidence            44554 44322 5567789999999999 544   6999986544

>1uvq_A HLA class II histocompatibility antigen; immunology, MHC class II, diabetes, narcolepsy, autoimmune disease, structural proteomics in europe, spine, structural genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 3pl6_A* 4d8p_A 1s9v_A 2nna_A 1jk8_A*

Probab=96.99  E-value=0.0017  Score=43.12  Aligned_cols=43  Identities=16%  Similarity=0.281  Sum_probs=29.7

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~   62 (74)
                      .+|.....++...  ..+..++|.|.|.| .|++ +|+|.+ ||+.+.
T Consensus        88 ~~P~V~v~~~~~~--~~~~~~tL~C~a~gFyP~~i~v~W~k-ng~~~~  132 (197)
T 1uvq_A           88 EVPEVTVFSKSPV--TLGQPNTLICLVDNIFPPVVNITWLS-NGQSVT  132 (197)
T ss_dssp             CCCEEEEEESSCC--CTTSCEEEEEEEEEECSSCCEEEEEE-TTEEEC
T ss_pred             CCCCcccccCCcc--ccCCccEEEEEEEeEcCCCCEEEEEE-CCEEcc
Confidence            4565555544332  23556999999999 6765 899996 888774

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=96.97  E-value=0.00064  Score=42.83  Aligned_cols=30  Identities=23%  Similarity=0.495  Sum_probs=25.9

Q ss_pred             cCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         24 EPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        24 ~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      +|+ .+.+..|+.++|.|.+.  |.|.|+|++.
T Consensus         6 ~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~   35 (211)
T 3tv3_L            6 QPP-SASGSPGQSITISCTGT--SNNFVSWYQQ   35 (211)
T ss_dssp             CCS-EEEECTTCEEEEEEECC--CSSCEEEEEE
T ss_pred             eCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEE
Confidence            445 67788899999999999  9999999984

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=96.97  E-value=0.00078  Score=44.41  Aligned_cols=41  Identities=17%  Similarity=0.411  Sum_probs=26.5

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCe
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGT   59 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~   59 (74)
                      ..|.+...++.. ....|..+.|.|.|.| .|.| +|+|.+ ||.
T Consensus       123 ~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~~~~v~W~~-~~~  165 (253)
T 3liz_H          123 TPPSVYPLAPGS-AAQTNSMVTLGCLVKGYFPEPVTVTWNS-GSL  165 (253)
T ss_dssp             BCCEEEEECC-------CCEEEEEEEEEEEBSSCCEEEEGG-GTB
T ss_pred             CCCeEEEecCCc-ccCCCCcEEEEEEEeeEeCCCeEEEEEe-CCe
Confidence            455555443433 2335777999999999 8888 999986 565

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=96.94  E-value=0.0033  Score=38.36  Aligned_cols=36  Identities=14%  Similarity=0.479  Sum_probs=28.8

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeC
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRS   56 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~   56 (74)
                      |+.++ |+ .+.+.+|++|+|.|.+++.+  .+.+.|++.
T Consensus         2 p~v~Q-p~-~v~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq   39 (123)
T 3t0v_A            2 PVLTQ-SP-SVSGTPGQKVTIFCSGSSSNVEDNSVYWYQQ   39 (123)
T ss_dssp             CSBEE-CC-CEEECTTCCEEEEEECCTTTTTTSCEEEEEE
T ss_pred             CccCc-cC-eEEEcCCCCEEEEEecCCCccCCCeEEEEEE
Confidence            56666 54 56688999999999999876  478999974

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=96.94  E-value=0.00069  Score=40.47  Aligned_cols=32  Identities=9%  Similarity=0.285  Sum_probs=26.8

Q ss_pred             cCCCcEEecCCCCeEEEEEEcccC---CCeEEEEeC
Q psy11558         24 EPPNRIDFSNTTGAQVECTARGSP---NPEIIWIRS   56 (74)
Q Consensus        24 ~Pp~~v~~~~g~~v~L~C~A~G~P---~P~I~W~~~   56 (74)
                      +|+. +...+|++++|.|.+.+.+   .+.+.|++.
T Consensus         6 q~~~-~~~~~G~~v~L~C~~~~~~~~~~~~v~Wyrq   40 (120)
T 1oaq_L            6 QESA-LTTSPGETVTLTCRSSTGAVTTSNYANWVQE   40 (120)
T ss_dssp             ECSE-EEECTTCEEEEEEEETTBCCCGGGCCEEEEE
T ss_pred             cCCc-EEEcCCCCEEEEEEeCCCccCCCCEEEEEEe
Confidence            3455 7788999999999999987   789999874

>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain, histocompatibi antigen, MHC class I molecule from B21 chicken, immune SYST; 2.00A {Gallus gallus}

Probab=96.94  E-value=0.0023  Score=39.63  Aligned_cols=45  Identities=24%  Similarity=0.303  Sum_probs=30.2

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCC--eEEEEeCCCeeec
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNP--EIIWIRSDGTAVG   62 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P--~I~W~~~dG~~i~   62 (74)
                      ...+|.....+++..  ..|..++|.|.|.|-.++  +|+|.+ ||+.+.
T Consensus        21 ~~~~P~V~v~~~~~~--~~g~~~~L~C~v~gFyP~~I~v~W~k-nG~~~~   67 (119)
T 3o81_A           21 ADLTPKVQVYSRFPA--SAGTKNVLNCFAAGFHPPKISITLMK-DGVPME   67 (119)
T ss_dssp             CCCSCEEEEEESSCC--CTTSCEEEEEEEEEESSSCCEEEEEE-TTEECT
T ss_pred             CccCCceEEEcCCcc--cCCCcEEEEEEEecccCCCcEEEEEE-CCEECC
Confidence            345666555433332  245569999999997655  799996 788763

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=96.93  E-value=0.00081  Score=43.11  Aligned_cols=33  Identities=21%  Similarity=0.409  Sum_probs=26.1

Q ss_pred             cCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeCC
Q psy11558         24 EPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRSD   57 (74)
Q Consensus        24 ~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~d   57 (74)
                      +|+ .+.+..|++++|.|.+.|.|  .+.|.|++.+
T Consensus         6 qp~-~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~   40 (215)
T 1c5d_H            6 ESG-PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQP   40 (215)
T ss_dssp             EEC-CCEECTTCCEEEEEEECSSCTTSCCEEEEEEC
T ss_pred             cCC-CeeecCCCcEEEEEEECCCcCCCCeEEEEEEC
Confidence            344 34577888999999999986  6999998753

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=96.93  E-value=0.0011  Score=38.45  Aligned_cols=30  Identities=20%  Similarity=0.398  Sum_probs=24.2

Q ss_pred             EEecCCCCeEEEEEEcccCCCe-----EEEEeCCC
Q psy11558         29 IDFSNTTGAQVECTARGSPNPE-----IIWIRSDG   58 (74)
Q Consensus        29 v~~~~g~~v~L~C~A~G~P~P~-----I~W~~~dG   58 (74)
                      +....|+++.|.|.+.+.|.+.     |.|++.+.
T Consensus         4 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~   38 (110)
T 1ncn_A            4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQEN   38 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTC
T ss_pred             EEEEeCCCEEEEeEeCCCCcCCCccEEEEEEeCCC
Confidence            4566788999999999888764     99998643

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=96.93  E-value=0.00097  Score=40.12  Aligned_cols=37  Identities=14%  Similarity=0.266  Sum_probs=28.4

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEc-------ccCCCeEEEEeCC
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTAR-------GSPNPEIIWIRSD   57 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~-------G~P~P~I~W~~~d   57 (74)
                      ..++. |..+....|+.|+|.|..+       +.+.+.|.|++.+
T Consensus         8 ~~~q~-p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~   51 (132)
T 1nko_A            8 YSLTM-QSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAG   51 (132)
T ss_dssp             CEEEE-CSEEEEETTCCEEECEEEECCCCTTTTTSCCEEEEEEC-
T ss_pred             eEEeC-CCEEEEcCCCeEEEEccccCCCccccCCCccEEEEEECC
Confidence            34455 5567788899999999998       4577899999854

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=96.91  E-value=0.00089  Score=43.24  Aligned_cols=35  Identities=17%  Similarity=0.317  Sum_probs=27.3

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeCC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRSD   57 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~d   57 (74)
                      +.+|+ .+.+..|++|+|.|.+.|.|  .+.|.|++.+
T Consensus         4 v~qp~-~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~   40 (223)
T 1dee_B            4 LVESG-GGVVQPGKSLRLSCAASGFTFSGYGMHWVRQA   40 (223)
T ss_dssp             EEEEC-CCEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             EEcCC-CEEEcCCCcEEEEEEecCcccCCceEEEEEEC
Confidence            34443 45677899999999999987  5999999753

>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...

Probab=96.91  E-value=0.0043  Score=36.65  Aligned_cols=33  Identities=18%  Similarity=0.363  Sum_probs=25.6

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeC
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRS   56 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~   56 (74)
                      .+|+. +...+|++|+|.|.+.+.+  .+.|.|++.
T Consensus         5 ~q~~~-~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq   39 (116)
T 1a2y_B            5 QESGP-GLVAPSQSLSITCTVSGFSLTGYGVNWVRQ   39 (116)
T ss_dssp             EEECC-SEECTTSCEEEEEEEESSCTTSSEEEEEEE
T ss_pred             EcCCC-EEEeCCCcEEEEEEEcCCCcCCcEEEEEEe
Confidence            33444 4578899999999999865  489999875

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=96.90  E-value=0.002  Score=41.00  Aligned_cols=32  Identities=16%  Similarity=0.461  Sum_probs=27.5

Q ss_pred             CcEEecCCCCeEEEEEEcc-cCCCeEEEEeCCC
Q psy11558         27 NRIDFSNTTGAQVECTARG-SPNPEIIWIRSDG   58 (74)
Q Consensus        27 ~~v~~~~g~~v~L~C~A~G-~P~P~I~W~~~dG   58 (74)
                      +.-.+..|.+..|+|.+.| .+.|+++|-+-+|
T Consensus        19 S~hsv~~G~~f~leCpv~yc~~rP~VtWcKln~   51 (120)
T 2aw2_A           19 SEHSILAGDPFELECPVKYCANRPHVTWCKLNG   51 (120)
T ss_dssp             EEEEEETTSCEEEEEEEECSSSCCEEEEEEECS
T ss_pred             ccceEecCCeEEEEccEEeccCCCceEEEecCC
Confidence            3344567888999999999 7999999999888

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=96.89  E-value=0.0014  Score=42.58  Aligned_cols=34  Identities=15%  Similarity=0.364  Sum_probs=27.2

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSD   57 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~d   57 (74)
                      ++. |..+.+..|++++|.|.+.+ +.|.|.|++.+
T Consensus         3 ~q~-p~~v~v~~G~~v~L~C~~~~-~~~~v~W~r~~   36 (238)
T 1bec_A            3 TQS-PRNKVAVTGGKVTLSCQQTN-NHNNMYWYRQD   36 (238)
T ss_dssp             EEE-CSEEEEETTCCEEEEEEESS-CCSEEEEEEEC
T ss_pred             ccC-CCeeEEeCCCcEEEEEEeCC-CCceEEEEEEC
Confidence            454 56667788999999999965 79999999854

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=96.89  E-value=0.00063  Score=43.28  Aligned_cols=33  Identities=3%  Similarity=0.205  Sum_probs=25.8

Q ss_pred             CCcEEecCCCCeEEEEEEcc-cCCCeEEEEeCCC
Q psy11558         26 PNRIDFSNTTGAQVECTARG-SPNPEIIWIRSDG   58 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G-~P~P~I~W~~~dG   58 (74)
                      ...+...+|++|+|+|.+.+ .+.|.|+|++.++
T Consensus         6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~   39 (180)
T 2dru_A            6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTN   39 (180)
T ss_dssp             CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSS
T ss_pred             cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCC
Confidence            44566778999999999976 4589999998533

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=96.87  E-value=0.0015  Score=43.16  Aligned_cols=35  Identities=14%  Similarity=0.214  Sum_probs=27.0

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCC--CeEEEEeC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPN--PEIIWIRS   56 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~--P~I~W~~~   56 (74)
                      ++..| ....+.+|+.++|.|.+.|.|.  |.|.|++.
T Consensus       154 ~~~~~-~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~  190 (268)
T 1x9q_A          154 KLDET-GGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQ  190 (268)
T ss_dssp             EEEEE-CCEEECTTCCEEEEEEEESSCGGGCEEEEEEE
T ss_pred             EEECC-CceEecCCCcEEEEEEecCccccccEEEEEEe
Confidence            34443 3446778889999999999874  99999874

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=96.87  E-value=0.00065  Score=43.93  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=27.0

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccCC----CeEEEEeCC
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSPN----PEIIWIRSD   57 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P~----P~I~W~~~d   57 (74)
                      .+|+. +.+..|++++|.|.+.|.|.    +.|+|++.+
T Consensus         5 ~qp~~-~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~   42 (228)
T 3bae_H            5 KESGP-GLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQP   42 (228)
T ss_dssp             EEECC-SEECTTCCEEEEEEEESSCHHHHCCEEEEEEEE
T ss_pred             eCCCc-eeecCCCeEEEEEEEeCcccCCCceeEEEEEEC
Confidence            34443 45778889999999999986    999998753

>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A

Probab=96.86  E-value=0.0062  Score=36.18  Aligned_cols=34  Identities=18%  Similarity=0.280  Sum_probs=27.3

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccC-CCeEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSP-NPEIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P-~P~I~W~~~   56 (74)
                      ++. |..+...+|++++|.|.+.+.+ .+.+.|++.
T Consensus         3 ~q~-p~~~~v~~G~~vtL~C~~~~~~~~~~v~Wyrq   37 (117)
T 3bp6_A            3 TFY-PAWLTVSEGANATFTCSLSNWSEDLMLNWNRL   37 (117)
T ss_dssp             EEE-CSEEEECTTCCEEEEEEESSCCTTCEEEEEEE
T ss_pred             eec-CCcEEEeCCCCEEEEeEeecCCCCCEEEEEEe
Confidence            455 4556678899999999999875 689999974

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=96.86  E-value=0.0019  Score=41.68  Aligned_cols=33  Identities=15%  Similarity=0.462  Sum_probs=26.5

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      ++. |..+.+..|++++|.|.+.+.+ +.|.|++.
T Consensus         5 ~q~-p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~   37 (207)
T 1ypz_E            5 EQS-PSALSLHEGTDSALRCNFTTTM-RSVQWFRQ   37 (207)
T ss_dssp             EES-CSEEEEETTCCEEEEEEESSCC-SEEEEEEE
T ss_pred             EEC-CCeEEEccCCcEEEEEEEeCCC-eEEEEEEe
Confidence            444 5666778899999999999865 69999875

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=96.85  E-value=0.00051  Score=43.41  Aligned_cols=30  Identities=13%  Similarity=0.220  Sum_probs=24.2

Q ss_pred             cEEecCCCCeEEEEEEcccCCCeEEEEeCCC
Q psy11558         28 RIDFSNTTGAQVECTARGSPNPEIIWIRSDG   58 (74)
Q Consensus        28 ~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG   58 (74)
                      .+....|++|+|+|.+.+ |.|.|+|++.+.
T Consensus         4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~   33 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKD   33 (171)
T ss_dssp             EEEEETTCCEEECCCCSS-CCSCEEEEETTE
T ss_pred             EEEEEcCCCEEEcCCCCC-CcceEEEEeCCc
Confidence            345667889999999966 999999998543

>1iak_A MHC class II I-AK; histocompatibility antigen, peptide complex, histocompa antigen I-AK; HET: NAG; 1.90A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1d9k_C* 1k2d_A* 1jl4_A 2pxy_C 1u3h_C 2z31_C 1muj_A* 1lnu_A* 3c5z_C 3c60_C 3c6l_C 3rdt_C 2iad_A 1iao_A 1es0_A 3cup_A* 3mbe_A* 1f3j_A*

Probab=96.85  E-value=0.0024  Score=42.37  Aligned_cols=43  Identities=19%  Similarity=0.309  Sum_probs=29.2

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~   62 (74)
                      .+|.....++...  ..+..++|.|.|.| .|++ +|+|.+ ||+.+.
T Consensus        89 ~~P~V~v~~~~~~--~~~~~~tL~C~a~gFyP~~i~v~W~k-ng~~~~  133 (199)
T 1iak_A           89 EAPQATVFPKSPV--LLGQPNTLICFVDNIFPPVINITWLR-NSKSVT  133 (199)
T ss_dssp             CCCEEEEEESSCC--CTTSCEEEEEEEEEECSSCCEEEEEE-TTEECC
T ss_pred             cCCCcccccCCcc--ccCCCcEEEEEEeeEeCCCcEEEEEE-CCEEcc
Confidence            4565554433322  23556999999999 6765 899996 888764

>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel, immune response, MHC I membrane, transmembrane, disease mutation; 2.80A {Homo sapiens}

Probab=96.83  E-value=0.0024  Score=39.54  Aligned_cols=44  Identities=14%  Similarity=0.198  Sum_probs=29.6

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCC--eEEEEeCCCeee
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNP--EIIWIRSDGTAV   61 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P--~I~W~~~dG~~i   61 (74)
                      ...+|.....+++..  ..|..++|.|.|.|--++  +|+|.+ ||+.+
T Consensus        21 ~~~~P~V~v~~~~~~--~~g~~~~L~C~~~gFyP~~I~v~W~k-nG~~~   66 (119)
T 3jts_B           21 IQRTPKIQVYSRHPA--ENGKSNFLNCYVSGFHPSDIEVDLLK-NGERI   66 (119)
T ss_dssp             CCBCCEEEEEESSCC--CTTSCEEEEEEEEEEBSSCCEEEEEE-TTEEC
T ss_pred             CccCCEEEEEccCcc--cCCCcEEEEEEEeCccCCCEEEEEEE-CCEEC
Confidence            345676555333322  345569999999996444  899996 78876

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=96.79  E-value=0.0048  Score=40.71  Aligned_cols=35  Identities=14%  Similarity=0.387  Sum_probs=28.3

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      .++. |..+.+.+|++++|.|.+++.+.+.+.|++.
T Consensus         6 v~Q~-p~~~~v~~G~svtL~C~~s~~~~~~v~Wyrq   40 (210)
T 2eys_A            6 VEQS-PQSLIILEGKNCTLQCNYTVSPFSNLRWYKQ   40 (210)
T ss_dssp             EEEE-CSEEEEETTCCEEEEEEECCSSCCEEEEEEE
T ss_pred             EEEe-CCEEEEecCCCEEEEEEECCCCCCeEEEEEe
Confidence            3444 4556678899999999999988889999974

>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B

Probab=96.79  E-value=0.0071  Score=35.80  Aligned_cols=34  Identities=9%  Similarity=0.277  Sum_probs=26.6

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~   56 (74)
                      +..|+. +...+|++|+|.|...+.+  .+.|.|++.
T Consensus         4 v~qp~~-~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq   39 (120)
T 1n4x_H            4 LQQSGP-ELKKPGETVKISCKATNYAFTDYSMHWVKQ   39 (120)
T ss_dssp             EEECCC-EEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             EECCCC-EEEcCCCeEEEEEEecCcccCCcEEEEEEE
Confidence            345554 6678899999999999854  678999875

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=96.79  E-value=0.0011  Score=38.57  Aligned_cols=33  Identities=12%  Similarity=0.093  Sum_probs=27.1

Q ss_pred             CCCcEEecCCCCeEEEEEEcc-cCCCeEEEEeCC
Q psy11558         25 PPNRIDFSNTTGAQVECTARG-SPNPEIIWIRSD   57 (74)
Q Consensus        25 Pp~~v~~~~g~~v~L~C~A~G-~P~P~I~W~~~d   57 (74)
                      |+..+....|++++|.|...+ .+.+.|.|++.+
T Consensus         3 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~k~~   36 (116)
T 2or8_A            3 SYVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQ   36 (116)
T ss_dssp             CCEEEEEETTSCEEECCBCCCTTCCCCEEEEESC
T ss_pred             CcceEEEEeCCcEEEEEEeeCCCCCcEEEEEEEC
Confidence            566777888999999999987 457889999864

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=96.78  E-value=0.0023  Score=47.27  Aligned_cols=43  Identities=19%  Similarity=0.241  Sum_probs=30.6

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcc--cCCCeEEEEeCCCeee
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARG--SPNPEIIWIRSDGTAV   61 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G--~P~P~I~W~~~dG~~i   61 (74)
                      .|.+...|+..+.+..|+.++|.|.+.|  .|.++++|.+ +|..+
T Consensus       223 ~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~-~~~~~  267 (772)
T 3v2a_R          223 IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEY-PSSKH  267 (772)
T ss_dssp             EEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEEC-C----
T ss_pred             cceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEec-CCccC
Confidence            4455666666566778989999999999  5678899997 55543

>1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1

Probab=96.78  E-value=0.0063  Score=36.28  Aligned_cols=34  Identities=18%  Similarity=0.388  Sum_probs=26.6

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~   56 (74)
                      +.+|+ .+...+|++|+|.|...|.+  .+.|.|++.
T Consensus         4 l~q~~-~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq   39 (121)
T 1kxv_C            4 LVESG-GGTVPAGGSLRLSCAASGNTLCTYDMSWYRR   39 (121)
T ss_dssp             EEEEC-CEEECTTCCEEEEEEEESCTTCCEEEEEEEE
T ss_pred             EEcCC-CEEEcCCCcEEEEEEecCCCcCceEEEEEEe
Confidence            34454 45678899999999999865  678999875

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=96.78  E-value=0.00053  Score=42.90  Aligned_cols=32  Identities=16%  Similarity=0.315  Sum_probs=26.2

Q ss_pred             EEecCCCCeEEEEEEc----ccCCCeEEEEeCCCeee
Q psy11558         29 IDFSNTTGAQVECTAR----GSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        29 v~~~~g~~v~L~C~A~----G~P~P~I~W~~~dG~~i   61 (74)
                      +.+..|+.+.|.|.+.    |.|.|.+.|.+ +|..+
T Consensus         4 v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~-~~~~i   39 (201)
T 1dr9_A            4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQK-EKKMV   39 (201)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEE-TTEEE
T ss_pred             EEEEeCCCEEEecccCCCcccccccEEEEEe-CCcEE
Confidence            4566788999999995    67899999997 67665

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=96.77  E-value=0.0015  Score=46.59  Aligned_cols=36  Identities=22%  Similarity=0.380  Sum_probs=26.0

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCC---CeEEE
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPN---PEIIW   53 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~---P~I~W   53 (74)
                      +|.+...||....+..|+.+.|.|.|.|.|+   ++|+|
T Consensus       246 ~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W  284 (475)
T 1iga_A          246 HPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW  284 (475)
T ss_pred             CcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE
Confidence            4554344454433467888999999999865   79999

>1u9k_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immunity, immune system receptor, immune system; 1.76A {Mus musculus} SCOP: b.1.1.1

Probab=96.76  E-value=0.0028  Score=37.52  Aligned_cols=33  Identities=21%  Similarity=0.304  Sum_probs=26.4

Q ss_pred             cCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeC
Q psy11558         24 EPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRS   56 (74)
Q Consensus        24 ~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~   56 (74)
                      ++|..+...+|++++|.|.+++.+  .+.+.|++.
T Consensus         4 q~p~~v~~~~G~~vtL~C~~~~~~~~~~~v~W~rq   38 (114)
T 1u9k_A            4 LEEERYDLVEGQTLTVKCPFNIMKYANSQKAWQRL   38 (114)
T ss_dssp             -CCEEEEECTTCCEEEEEECCHHHHTTSEEEEEEC
T ss_pred             cCCccEEEeCCCcEEEEeEecCcccCCceEEEEEe
Confidence            346667788999999999999764  568999985

>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}

Probab=96.76  E-value=0.0069  Score=36.60  Aligned_cols=35  Identities=14%  Similarity=0.280  Sum_probs=28.1

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      .++. |..+...+|++++|.|..++...+.+.|++.
T Consensus         8 V~Q~-p~~~~v~~G~~vtL~C~~~~~~~~~v~Wyrq   42 (125)
T 3r8b_B            8 VTQS-PRNKVAVTGEKVTLSCKQTNSYFNNMYWYRQ   42 (125)
T ss_dssp             EEEE-CSEEEEETTCCEEEEEEEESCCCSEEEEEEE
T ss_pred             EEec-CCeEEEcCCCcEEEEEEECCCCCCeEEEEEE
Confidence            3444 5666678899999999999887779999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	74
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	2e-05
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-05
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	0.002
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	0.004

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.2 bits (85), Expect = 2e-05
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 16 TLGPIFIKEPPNRIDFSNTTGAQV--ECTARGSPNPEIIWIR 55
          + GP+F ++P + +    +   +V   C AR +P     W  
Sbjct: 2  SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKM 43

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 37.0 bits (85), Expect = 2e-05
 Identities = 8/36 (22%), Positives = 14/36 (38%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWI 54
          P + ++P   I         + C   G P P ++W 
Sbjct: 3  PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWS 38

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 31.9 bits (71), Expect = 0.002
 Identities = 8/40 (20%), Positives = 10/40 (25%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG 58
          PI     P           +  C       P I WI+   
Sbjct: 5  PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVE 44

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 31.0 bits (69), Expect = 0.004
 Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)

Query: 19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIW 53
          P FI +P         + A   C    S  P + W
Sbjct: 2  PRFIVKPYGTEVGEGQS-ANFYCRVIASSPPVVTW 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	74
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.3
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.25
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.22
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.21
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.21
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.2
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.19
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.16
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.12
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.01
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.99
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	98.99
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.98
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.96
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.92
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	98.91
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.91
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.91
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.9
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	98.9
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	98.89
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	98.86
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.81
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.81
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.8
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.79
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.78
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.77
d2avga1	110	Cardiac myosin binding protein C, different domain	98.73
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.72
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.7
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.69
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.63
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.63
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.59
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	98.56
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.55
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.51
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.46
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.46
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.44
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.42
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.39
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.36
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.36
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.36
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.34
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.29
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.27
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.27
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.22
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.13
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.12
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.09
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.92
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	97.92
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	97.92
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.69
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.69
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.25
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.15
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.14
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.06
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.05
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	96.98
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.98
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	96.96
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.91
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.89
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	96.88
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	96.87
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	96.86
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	96.84
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	96.8
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	96.78
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	96.77
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	96.71
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	96.69
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	96.68
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	96.67
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	96.63
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	96.61
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	96.55
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	96.54
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	96.53
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	96.52
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	96.5
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	96.47
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	96.46
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	96.4
d8faba1	103	Immunoglobulin light chain lambda variable domain,	96.4
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	96.39
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	96.39
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	96.36
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	96.35
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	96.34
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	96.32
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	96.28
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	96.26
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	96.26
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	96.25
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	96.23
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	96.23
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	96.2
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	96.18
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	96.17
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	96.13
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	96.11
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	96.1
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	96.07
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	96.05
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	96.03
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.03
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	96.0
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	96.0
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	96.0
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	95.98
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	95.94
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	95.93
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	95.93
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	95.91
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	95.91
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	95.86
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	95.83
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	95.79
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	95.79
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	95.76
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	95.76
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	95.75
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	95.69
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	95.69
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	95.64
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	95.62
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	95.59
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	95.52
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	95.39
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	95.39
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	95.37
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	95.34
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	95.33
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	95.29
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	95.27
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	95.23
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	95.18
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	95.16
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	95.14
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	95.12
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	95.1
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	95.08
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	95.08
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	95.06
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	95.05
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	95.04
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	95.04
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	95.03
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	94.91
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	94.91
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	94.87
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	94.85
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	94.83
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	94.82
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	94.67
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	94.61
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	94.44
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	94.32
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	94.13
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	94.01
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	93.82
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	93.78
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	93.59
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	93.58
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	93.48
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	93.37
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	93.35
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	93.35
d1igyb3	116	Immunoglobulin heavy chain gamma constant domain 2	93.29
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	93.18
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	92.26
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	91.95
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	91.9
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	91.83
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	91.78
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	91.71
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	91.7
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	91.53
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	91.46
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	91.45
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	91.34
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	91.21
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	91.14
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	91.09
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	91.03
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	90.95
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	90.86
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	90.85
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	90.8
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	90.66
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	90.6
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	90.4
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	90.39
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	90.29
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	90.14
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	90.03
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	90.01
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	89.96
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	89.95
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	89.8
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	89.79
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	89.65
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	89.64
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	89.61
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	89.61
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	89.6
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	89.51
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	89.23
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	89.12
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	88.95
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	88.93
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	88.79
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	88.59
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	88.35
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	88.32
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	88.31
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	88.31
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	88.07
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	87.95
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	87.7
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	87.54
d2oz4a1	84	Intercellular cell adhesion molecule-1 (ICAM-1) {H	87.41
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	87.39
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	87.14
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	87.08
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	87.06
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	86.93
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	86.48
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	86.45
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	86.32
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	86.19
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	86.06
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	85.64
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	85.32
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	85.24
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	85.12
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	84.95
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	84.9
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	84.69
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	84.37
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	84.01
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	83.99
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	83.74
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	83.52
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	83.32
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	83.17
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	83.1
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	83.02
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	82.75
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	82.27
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	82.21
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	81.07
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	80.8
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	80.59

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.30  E-value=1.4e-12  Score=75.62  Aligned_cols=46  Identities=17%  Similarity=0.544  Sum_probs=41.0

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      ++|.|+.+|++.+.+.+|+.+.|.|.|.|+|+|+|+|++ ||.+|..
T Consensus         1 saP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~-~~~~i~~   46 (89)
T d1biha4           1 SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH-NAKPLSG   46 (89)
T ss_dssp             EEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEE-TTEECCS
T ss_pred             CCCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEe-CCccCcc
Confidence            379999999888888889999999999999999999997 8888753

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.1e-11  Score=71.90  Aligned_cols=45  Identities=33%  Similarity=0.730  Sum_probs=38.4

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccCCC-eEEEEeCCCeeecCCC
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSDGTAVGDVP   65 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P-~I~W~~~dG~~i~~~~   65 (74)
                      |.|+.+|.+ ..+..|+++.|.|.|.|+|.| +|+|++ ||.++....
T Consensus         2 P~f~~~P~~-~~v~~G~~~~l~C~~~g~P~P~~i~W~k-~g~~i~~~~   47 (85)
T d1rhfa2           2 PFFTVEPKD-LAVPPNAPFQLSCEAVGPPEPVTIVWWR-GTTKIGGPA   47 (85)
T ss_dssp             CEEEECCCC-EEECTTCCEEEEEEEECSSSCCEEEEEE-TTEECSCSE
T ss_pred             CcEEEeCCc-EEEcCCCEEEEEEEEecCCcceEEEEEE-CCEECCCCC
Confidence            899999654 557789899999999999999 999996 898886544

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.22  E-value=2.9e-11  Score=70.95  Aligned_cols=55  Identities=24%  Similarity=0.606  Sum_probs=44.2

Q ss_pred             ccCCCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCCce
Q psy11558         12 AEDDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR   68 (74)
Q Consensus        12 ~~~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~~r   68 (74)
                      ++....+|.|+..|. ++.+..|+.+.|.|.+.|+|.|+|+|++ ||.+|....+.+
T Consensus         2 e~~p~~~P~f~~~~~-~~~v~~G~~~~l~C~~~g~P~p~v~W~k-~~~~i~~~~~~~   56 (102)
T d1fhga_           2 EEKPHVKPYFTKTIL-DMEVVEGSAARFDCKVEGYPDPEVMWFK-DDNPVKESRHFQ   56 (102)
T ss_dssp             CCCCCEEEEEEECCC-CEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCSSSEE
T ss_pred             CCCCCCCCeEEcCCC-cEEEecCCcEEEEEEEEeccCCeEEEEe-eeccccceeeEe
Confidence            344456899998865 5667889999999999999999999996 888887655443

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.21  E-value=1.4e-11  Score=71.25  Aligned_cols=45  Identities=27%  Similarity=0.448  Sum_probs=39.3

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      .+|.|....|+.+....|+.++|.|.|.|+|.|+|+|+++||...
T Consensus         3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~   47 (91)
T d1cs6a3           3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQT   47 (91)
T ss_dssp             EEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCS
T ss_pred             cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccc
Confidence            478888887788888899999999999999999999998777654

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.21  E-value=1.7e-11  Score=71.02  Aligned_cols=46  Identities=22%  Similarity=0.535  Sum_probs=38.8

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      .|.|+..|.+ +.+..|+.+.|.|.|.|+|.|+|+|++ ||.+|....
T Consensus         1 kP~f~~~~~~-~~v~~G~~~~l~C~~~g~P~p~v~W~k-~g~~i~~~~   46 (89)
T d1cs6a4           1 QPDWLDVITD-TEADIGSDLRWSCVASGKPRPAVRWLR-DGQPLASQN   46 (89)
T ss_dssp             EEEEEECCCC-EEEETTCCEEEECEEEEESCCEEEEEE-TTEECCCCS
T ss_pred             CCCeEEECCC-EEECCCCcEEEEEEEEEEcCCEEEEEE-eeccccccc
Confidence            4899998654 567788899999999999999999996 888886544

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.20  E-value=1.9e-11  Score=71.22  Aligned_cols=50  Identities=28%  Similarity=0.627  Sum_probs=39.5

Q ss_pred             ccceEEEcCCCcEEecCC---CCeEEEEEEcccCCCeEEEEeCCCeeecCCCCce
Q psy11558         17 LGPIFIKEPPNRIDFSNT---TGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR   68 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g---~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~~r   68 (74)
                      .+|+|+++|.+.+ +..|   +.++|.|.|.|+|.|+|+|++ ||.++....+.+
T Consensus         3 ~~P~f~~~P~~~~-~~~g~~~~~v~l~C~~~g~P~p~v~W~~-ng~~i~~~~~~~   55 (97)
T d1cs6a1           3 YGPVFEEQPAHTL-FPEGSAEEKVTLTCRARANPPATYRWKM-NGTELKMGPDSR   55 (97)
T ss_dssp             EEEEEEECCCCEE-EETTCSCCEEEECCEEEEESCCEEEEEE-TTEECCCSTTSS
T ss_pred             cCCEEEEeCCCEE-EECccCCCeEEEEEEEEEeCCCEEEEEE-eeeeccCCCCce
Confidence            4799999976654 4443   469999999999999999997 888886655443

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.19  E-value=4.3e-11  Score=69.74  Aligned_cols=51  Identities=16%  Similarity=0.359  Sum_probs=42.2

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCCce
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR   68 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~~r   68 (74)
                      .++|.|+..+ +++.+..|+.++|.|.+.|+|.|+|+|++ ||.+|.......
T Consensus         2 ~eaP~f~~~~-~~~~v~~g~~v~l~c~v~g~P~p~v~W~k-~~~~i~~~~~~~   52 (98)
T d1g1ca_           2 MEAPKIFERI-QSQTVGQGSDAHFRVRVVGKPDPECEWYK-NGVKIERSDRIY   52 (98)
T ss_dssp             CEEEEEEECC-CCEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCCSSEE
T ss_pred             CcCCeEecCC-CcEEEcCCCcEEEEEEEEEecCCeEEEEe-CceEEeeeeeeE
Confidence            3689999886 55567888899999999999999999996 888887665543

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.16  E-value=5e-11  Score=69.36  Aligned_cols=45  Identities=22%  Similarity=0.465  Sum_probs=38.0

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      .|.|+..|.+. ...+|+.+.|.|.|.|+|.|+|+|++ ||.+|...
T Consensus         1 ~P~f~~~p~~~-~v~~G~~~~l~C~~~g~P~p~v~W~~-~~~~l~~~   45 (97)
T d1koaa1           1 QPRFIVKPYGT-EVGEGQSANFYCRVIASSPPVVTWHK-DDRELKQS   45 (97)
T ss_dssp             SCEEEECCCCC-EEETTSCEEEEEEEECSSCCEEEEEE-TTEECCSB
T ss_pred             CCEEEEeCCCE-EEeCCCcEEEEEEEEEcCCCEEEEEE-eeecccee
Confidence            58999996554 56788899999999999999999997 78887653

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.7e-10  Score=67.69  Aligned_cols=51  Identities=12%  Similarity=0.323  Sum_probs=41.2

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCCceE
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLRK   69 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~~r~   69 (74)
                      .|.++..+.+.+.+..|++++|.|.|.|+|.|+|+|++ ||..+......+.
T Consensus         1 kP~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~-~g~~i~~~~~~~~   51 (107)
T d1iray3           1 RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKW-NGSVIDEDDPVLG   51 (107)
T ss_dssp             CCEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEE-TTEECCTTCSSEE
T ss_pred             CCCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEE-CCcccccccceee
Confidence            47888765566777789999999999999999999996 8888876655443

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=3.6e-10  Score=65.37  Aligned_cols=46  Identities=26%  Similarity=0.423  Sum_probs=37.3

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      .+.|...| +...+.+|+.+.|.|.|.|+|.|+|+|++ ||..+....
T Consensus         1 k~~F~~~P-~~~~v~~G~~~~l~C~v~g~p~p~v~W~~-~~~~i~~~~   46 (92)
T d1epfa2           1 KLMFKNAP-TPQEFKEGEDAVIVCDVVSSLPPTIIWKH-KGRDVILKK   46 (92)
T ss_dssp             CSEEEECC-SSEECCTTSCEEECCEEECSSCCEEEEEE-TTEEGGGGC
T ss_pred             CcEEEEcC-CCEEEeCCCcEEEEEEEeecCCCeEEEEE-cCccccccc
Confidence            36788885 55578899999999999999999999997 666665443

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.99  E-value=2.6e-10  Score=66.44  Aligned_cols=41  Identities=20%  Similarity=0.387  Sum_probs=36.3

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      ..+|.|+...|+++.+..|+++.|.|.|.|+|.|+|+|++.
T Consensus         2 ~~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~   42 (109)
T d2fdbp2           2 RHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKH   42 (109)
T ss_dssp             CSCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEE
T ss_pred             CCCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEec
Confidence            46899988767777889999999999999999999999974

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=3.6e-10  Score=66.14  Aligned_cols=47  Identities=11%  Similarity=0.234  Sum_probs=38.4

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCCc
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGL   67 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~~   67 (74)
                      |.|+.. ++++.+..|+.+.|.|.+.|+|.|+|+|++ ||..|......
T Consensus         1 P~~~~~-p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k-~~~~l~~~~~~   47 (101)
T d2cqva1           1 PQIIQF-PEDQKVRAGESVELFGKVTGTQPITCTWMK-FRKQIQESEHM   47 (101)
T ss_dssp             CEESCC-CCSEEEETTCCEEEEEEEESSSSCEEEEEE-SSSBCCCSSSE
T ss_pred             CeEEee-CCcEEEeCCCcEEEEEEEEecCCCEEEEEe-CceeeccCCcE
Confidence            677776 456678889999999999999999999997 77777665544

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.98  E-value=5.6e-10  Score=64.30  Aligned_cols=48  Identities=19%  Similarity=0.405  Sum_probs=39.0

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCCc
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGL   67 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~~   67 (74)
                      +|.|+.. +.++.+..|+.+.|.|.+.|+|.|+|+|.+ ||..+......
T Consensus         2 ~P~i~~~-~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~-~~~~i~~~~~~   49 (93)
T d1wiua_           2 KPKILTA-SRKIKIKAGFTHNLEVDFIGAPDPTATWTV-GDSGAALAPEL   49 (93)
T ss_dssp             CCEECCC-CCEEEECSSBCCEEEEEEECCSSCEEEEEC-SSSSCBCSTTS
T ss_pred             CCeEEeC-CCcEEEeCCCeEEEEEEEEEecCCeEEEEe-eeeeceeeeee
Confidence            5788765 577888999999999999999999999996 67666554443

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=7.7e-11  Score=68.40  Aligned_cols=49  Identities=24%  Similarity=0.441  Sum_probs=37.2

Q ss_pred             cceEE-EcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCCc
Q psy11558         18 GPIFI-KEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGL   67 (74)
Q Consensus        18 ~P~fv-~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~~   67 (74)
                      +|.+. .++|+.+.+.+|+.+.|.|.|.|+|.|+|+|++ ||..+.+...+
T Consensus         2 ~P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k-~g~~~~~~~~~   51 (84)
T d2oz4a3           2 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK-DGTFPLPIGES   51 (84)
T ss_dssp             EEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEE-TTTEECCTTSC
T ss_pred             CCceeecCCCccEEEeCCCEEEEEEEEeEcCccEEEEEE-eeccceeeeee
Confidence            35553 345677788899999999999999999999997 66666554433

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.92  E-value=8.7e-10  Score=63.31  Aligned_cols=46  Identities=20%  Similarity=0.448  Sum_probs=37.6

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCC-eEEEEeCCCeeecCCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSDGTAVGDVP   65 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P-~I~W~~~dG~~i~~~~   65 (74)
                      .|.|..+| .++.+..|+.+.|.|.|.|.|.| .|+|++ ||.++....
T Consensus         2 ~P~i~~~p-~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~-~g~~l~~~~   48 (94)
T d1biha1           2 YPVLKDQP-AEVLFRENNPTVLECIIEGNDQGVKYSWKK-DGKSYNWQE   48 (94)
T ss_dssp             CCEECCCC-SEEEEETTSCEEECCCEESCCSSCEEEEEE-SSSBCCTTT
T ss_pred             CCEEEecC-CcEEEeCCCeEEEEEEecCCCCeeEEEEEe-eeeeeeeec
Confidence            58888885 56678889999999999999977 699996 788775443

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.91  E-value=3e-10  Score=65.40  Aligned_cols=44  Identities=20%  Similarity=0.616  Sum_probs=35.7

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG   66 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~   66 (74)
                      |+.. |+++.+.+|+.+.|.|.+.|+|.|+|+|++ ||.++.....
T Consensus         2 ii~~-P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~-~g~~l~~~~~   45 (91)
T d1tnna_           2 ILTK-PRSMTVYEGESARFSCDTDGEPVPTVTWLR-KGQVLSTSAR   45 (91)
T ss_dssp             CSBC-CCCEECSSSSCCCEEEECCCSSCCCCEEES-SSSTTCSSSS
T ss_pred             EEeC-CcCEEEeCCCcEEEEEEEEEEeCCeEEEEE-eecccccccc
Confidence            3444 567788899999999999999999999986 7887765544

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.91  E-value=1e-09  Score=63.76  Aligned_cols=46  Identities=20%  Similarity=0.435  Sum_probs=35.6

Q ss_pred             cceEEEcCCC-cEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         18 GPIFIKEPPN-RIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        18 ~P~fv~~Pp~-~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      +|.|...+.. .+....|+.++|.|.|.|+|.|+|+|++ ||.++...
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~-~g~~i~~~   49 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTK-DGEPIENE   49 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEE-TTEECCCC
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEe-CCcccccc
Confidence            6777776433 2344568889999999999999999997 78877543

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.7e-09  Score=62.02  Aligned_cols=41  Identities=15%  Similarity=0.309  Sum_probs=33.4

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      +...|++.+....|+.+.|.|.|.|.|.|+|+|.+.++..+
T Consensus         3 i~i~P~~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~   43 (90)
T d1vcaa2           3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL   43 (90)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCC
T ss_pred             EEEECCCcEEEECCCEEEEEEeccCCCCceEEEEecCccce
Confidence            44567777767788899999999999999999998666543

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=7.6e-10  Score=64.88  Aligned_cols=44  Identities=18%  Similarity=0.420  Sum_probs=35.1

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccC-CCeEEEEeCCCeee
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSP-NPEIIWIRSDGTAV   61 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P-~P~I~W~~~dG~~i   61 (74)
                      ..|.|+++| +...+..|+.+.|.|.|.|.| .|+|+|+++++...
T Consensus         2 ~~~~fi~~~-~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~   46 (104)
T d2aw2a1           2 DVQLYIKRQ-SEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTC   46 (104)
T ss_dssp             CCEECCCTT-EEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCE
T ss_pred             CccEEEecC-CeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccc
Confidence            467888875 555677899999999999999 59999998665443

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=98.90  E-value=5.2e-10  Score=65.11  Aligned_cols=46  Identities=17%  Similarity=0.494  Sum_probs=34.5

Q ss_pred             cceEEEcCC---CcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         18 GPIFIKEPP---NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        18 ~P~fv~~Pp---~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      +|.|+..+.   ....+..|+.+.|.|.+.|+|.|+|+|++ ||.++...
T Consensus         1 AP~~~~p~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k-ng~~l~~~   49 (97)
T d3dara1           1 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQE   49 (97)
T ss_dssp             EEEESCSTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEE-TTEECCGG
T ss_pred             CCccccccccccccEEECCCCcEEEEEEEeEECCCEEEEEE-CCEecccc
Confidence            366664322   22345678889999999999999999996 88887543

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=7.4e-10  Score=63.17  Aligned_cols=33  Identities=6%  Similarity=0.138  Sum_probs=28.0

Q ss_pred             EecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         30 DFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        30 ~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      .+.+|++++|.|.|.|+|.|+|+|.++++..+.
T Consensus        10 ~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~   42 (84)
T d2nxyb2          10 HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ   42 (84)
T ss_dssp             CEETTCCEEEEEECCTTCCCEEEEECTTCCEEE
T ss_pred             EEECCCeEEEEEEeEcCCchheEEEeeccccee
Confidence            456788999999999999999999987666543

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.8e-09  Score=61.62  Aligned_cols=39  Identities=26%  Similarity=0.724  Sum_probs=33.1

Q ss_pred             CCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         26 PNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      |.++.+..|+.++|.|.|.|.|.|+|+|.+ ||.++....
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k-~g~~l~~~~   41 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVK-DGAVVQNLD   41 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEE-TTEECCSSE
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEE-eecccccce
Confidence            566778889999999999999999999996 888875443

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.4e-09  Score=62.50  Aligned_cols=40  Identities=18%  Similarity=0.307  Sum_probs=33.9

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG   58 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG   58 (74)
                      .|.|...|++. .+.+|+.+.|.|.|.|+|.|+|+|++++.
T Consensus         2 ~P~i~~~~~~~-~v~~G~~v~l~C~~~g~P~p~v~W~~~~~   41 (92)
T d2ifga1           2 VPTLKVQVPNA-SVDVGDDVLLRCQVEGRGLEQAGWILTEL   41 (92)
T ss_dssp             CCEEEEECCSS-CCBTTCCEEEEEEEECSSCCCCCEEESCC
T ss_pred             CCEEEEeCCCE-EEeCCCEEEEeeeccCCCCcEEEEEECCc
Confidence            58899887654 56788899999999999999999998543

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=2.8e-09  Score=61.80  Aligned_cols=49  Identities=12%  Similarity=0.260  Sum_probs=40.5

Q ss_pred             CCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         15 DTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        15 ~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      +..+|.|+..++..+.+..|+.+.|.|.++| |.|+|+|++ ||..|....
T Consensus         2 e~~~~~f~~~l~~~~~v~~G~~v~l~c~v~~-p~~~v~W~k-~g~~i~~~~   50 (94)
T d1pd6a_           2 EKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLK-NGQEIQMSG   50 (94)
T ss_dssp             CSTTSSCSEECCSEEEEETTSCEEEEEECSS-SSSCCEEEE-SSSEECCCS
T ss_pred             CCCCCcEEEeCCCCEEECcCCeEEEEEEECC-CCceEEEEE-cCccceeee
Confidence            4568899999877777888999999999965 999999997 788776543

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=9.4e-09  Score=59.34  Aligned_cols=38  Identities=18%  Similarity=0.452  Sum_probs=32.0

Q ss_pred             CCcEEecCCCCeEEEEEEcccCC-CeEEEEeCCCeeecC
Q psy11558         26 PNRIDFSNTTGAQVECTARGSPN-PEIIWIRSDGTAVGD   63 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~P~-P~I~W~~~dG~~i~~   63 (74)
                      |..+++..|+++.|.|.|.|.|+ |+|+|++.||..+..
T Consensus         7 P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~   45 (97)
T d1epfa1           7 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP   45 (97)
T ss_dssp             SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECC
T ss_pred             CCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeee
Confidence            45567788999999999999995 899999888887654

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.79  E-value=5.8e-09  Score=60.50  Aligned_cols=45  Identities=13%  Similarity=0.249  Sum_probs=34.9

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG   66 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~   66 (74)
                      .|.|+.   +++....|+++.|.|.+.|+|.|+|+|++ ||..+...+.
T Consensus         5 ~p~~~~---~~~~~~~G~~v~l~C~~~g~P~~~v~W~k-~g~~i~~~~~   49 (97)
T d1biha3           5 VPQYVS---KDMMAKAGDVTMIYCMYGSNPMGYPNYFK-NGKDVNGNPE   49 (97)
T ss_dssp             EEEEEC---CSEEEETTSCEEEEEEEECSSCCCCEEEE-TTEECCCCTT
T ss_pred             CCeeCC---CCEEEecCCeEEEEEEEEEecCCEEEEEE-eeeeccccce
Confidence            345552   45567789899999999999999999997 7887755443

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=9.5e-09  Score=59.56  Aligned_cols=41  Identities=15%  Similarity=0.354  Sum_probs=35.8

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEc-ccCCCeEEEEeCCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTAR-GSPNPEIIWIRSDG   58 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~-G~P~P~I~W~~~dG   58 (74)
                      .|.+++.|+..+.+..|+++.|.|.|. |.|.|+|+|.+.|+
T Consensus         2 kP~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~   43 (90)
T d1gsma1           2 KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDT   43 (90)
T ss_dssp             CSEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTT
T ss_pred             cCcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeee
Confidence            578888888888888999999999885 99999999997554

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.77  E-value=2.1e-09  Score=63.49  Aligned_cols=48  Identities=15%  Similarity=0.189  Sum_probs=38.0

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEE-cccCCCeEEEEeCCCeeecCCCCce
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTA-RGSPNPEIIWIRSDGTAVGDVPGLR   68 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A-~G~P~P~I~W~~~dG~~i~~~~~~r   68 (74)
                      -|..+|++.+.+.+|+++.|.|.| .|.|.|+|+|++ ||.++...+..|
T Consensus         5 ~F~~~~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k-~g~~~~~~~~~~   53 (105)
T d1cs6a2           5 EFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLL-NEFPNFIPADGR   53 (105)
T ss_dssp             CCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEE-SSTTCBCCCCSS
T ss_pred             cccCCCCCCEEEeCCCeEEEEEEccCCCCCCEEEEEE-eeccccccccce
Confidence            466777888888999999999998 799999999997 666554444333

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.3e-08  Score=58.67  Aligned_cols=39  Identities=13%  Similarity=0.357  Sum_probs=32.9

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccC---CCeEEEEeCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSP---NPEIIWIRSD   57 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P---~P~I~W~~~d   57 (74)
                      .|.|+..| +++.+..|++++|.|.+.|.|   .|+|+|++++
T Consensus         4 ~~~Fv~~P-~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~   45 (110)
T d2avga1           4 IGLFVMRP-QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGK   45 (110)
T ss_dssp             TCSEEECC-CCEEEETTSEEEEEEEEECCSCSSSCEEEEECST
T ss_pred             CCEeEECC-CeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCc
Confidence            36899986 556788899999999999999   7999999743

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.5e-09  Score=62.98  Aligned_cols=37  Identities=22%  Similarity=0.431  Sum_probs=31.0

Q ss_pred             cCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         24 EPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        24 ~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      +.++.+.+..|+.++|+|.++|.|.|+|+|.+ ++..+
T Consensus        14 ~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~-~~~~~   50 (130)
T d1gxea_          14 RIPDTIVVVAGNKLRLDVPISGDPAPTVIWQK-AITQG   50 (130)
T ss_dssp             CCCCEEEESSSSCCCCEEECCSBSCCEEEEEE-ECCCS
T ss_pred             CCCCCEEEEcCCeEEEEEEEEEecCCeEEEee-CCeEc
Confidence            34667788899999999999999999999997 45444

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=1.7e-08  Score=57.04  Aligned_cols=40  Identities=20%  Similarity=0.356  Sum_probs=32.0

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEc-ccCCCeEEEEeCCC
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTAR-GSPNPEIIWIRSDG   58 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~-G~P~P~I~W~~~dG   58 (74)
                      |.+..+++....+.+|+++.|.|.|. |.|.|+|+|+++++
T Consensus         2 ~~v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~   42 (89)
T d1gl4b_           2 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHN   42 (89)
T ss_dssp             EEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGG
T ss_pred             CEEEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCc
Confidence            44455557777888999999999997 78999999997544

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=5.5e-09  Score=60.38  Aligned_cols=40  Identities=13%  Similarity=0.438  Sum_probs=32.9

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCe
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT   59 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~   59 (74)
                      .-+..++..+.+.+|+++.|.|.+.|.|.|+|+|+++++.
T Consensus         5 v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~   44 (105)
T d1nbqa1           5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGD   44 (105)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETT
T ss_pred             eEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeec
Confidence            3445556677788899999999999999999999986554

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=1.6e-08  Score=58.51  Aligned_cols=38  Identities=16%  Similarity=0.437  Sum_probs=32.4

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCee
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTA   60 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~   60 (74)
                      ..|+..+.+.+|+++.|.|.+.|.|.|.|+|.+.++..
T Consensus         5 ~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~   42 (102)
T d1f97a1           5 YTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGST   42 (102)
T ss_dssp             ECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTE
T ss_pred             EccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccc
Confidence            44567777889999999999999999999999876654

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=8.5e-09  Score=60.77  Aligned_cols=39  Identities=15%  Similarity=0.346  Sum_probs=31.5

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcccC---CCeEEEEeCCCe
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARGSP---NPEIIWIRSDGT   59 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~P---~P~I~W~~~dG~   59 (74)
                      +|+..| +++.+..|+.++|.|.+.|+|   .|+|+|++++..
T Consensus         2 ~F~~~P-~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~   43 (113)
T d2dava1           2 LFIEKP-QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWM   43 (113)
T ss_dssp             SCCSCC-CCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSC
T ss_pred             EEeECC-ceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeecc
Confidence            366675 556788899999999999999   799999985443

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.6e-08  Score=58.27  Aligned_cols=39  Identities=13%  Similarity=0.265  Sum_probs=32.3

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCC-eEEEEeCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNP-EIIWIRSD   57 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P-~I~W~~~d   57 (74)
                      +|.|...| ......+|+.+.|.|.|.|+|+| .++|++.+
T Consensus         2 PP~i~~~~-~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~   41 (101)
T d3b5ha1           2 PPRVKAVK-SSEHINEGETAMLVCKSESVPPVTDWAWYKIT   41 (101)
T ss_dssp             SCCCEESC-SEEEECTTSCEEEEEECCCSSCCCEEEEEECC
T ss_pred             CceEEEcC-CcEEECcCCeEEEEEEEEecCCeeEEEEEecc
Confidence            68888775 55567789899999999999998 69999753

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=5.1e-08  Score=56.94  Aligned_cols=30  Identities=23%  Similarity=0.630  Sum_probs=24.9

Q ss_pred             eEEEEEEcccCCCeEEEEeCCCeeecCCCCc
Q psy11558         37 AQVECTARGSPNPEIIWIRSDGTAVGDVPGL   67 (74)
Q Consensus        37 v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~~   67 (74)
                      ..|.|.|.|+|.|+|+|++ ||.+|......
T Consensus        20 ~~i~~~v~G~P~P~v~W~~-n~~~i~~~~~~   49 (105)
T d1wwca_          20 HCIEFVVRGNPPPTLHWLH-NGQPLRESKII   49 (105)
T ss_dssp             EEEEEEEECSSCCEEEEEE-TTEECCCSSSE
T ss_pred             EEEEEEEEEeCCCeEEEEe-CccccCCCcce
Confidence            5688899999999999997 88888765443

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=9.7e-08  Score=55.94  Aligned_cols=32  Identities=19%  Similarity=0.471  Sum_probs=26.5

Q ss_pred             CCCeEEEEEEcccCCCeEEEEeCCCeeecCCCC
Q psy11558         34 TTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG   66 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~   66 (74)
                      +....+.|.+.|+|.|+|+|++ ||.+|.....
T Consensus        16 ~~~~~i~~~v~G~P~P~i~W~~-~g~~l~~~~~   47 (103)
T d1wwbx_          16 DHHWCIPFTVKGNPKPALQWFY-NGAILNESKY   47 (103)
T ss_dssp             CCEEEEEEEEECSSCCEEEEEE-TTEEECCCSS
T ss_pred             ceeEEEEEEEEEeCCCEEEEEE-CCEEeeeeee
Confidence            3447899999999999999997 8988876543

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.51  E-value=8.6e-08  Score=54.44  Aligned_cols=47  Identities=11%  Similarity=0.143  Sum_probs=37.6

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      -+|+++.+|+.. .+.+|+.++|.|.|.|.|.|.+.|.++||..+...
T Consensus         4 Pkpvi~~~P~~~-~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~   50 (84)
T d1fnla1           4 PKAVVFLEPQWY-SVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ   50 (84)
T ss_dssp             CCCEEEEESCCS-EEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS
T ss_pred             CCCEEEECCCCc-EEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec
Confidence            468888887655 45678899999999999999877766789877543

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=9.2e-08  Score=54.78  Aligned_cols=36  Identities=17%  Similarity=0.217  Sum_probs=29.6

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEE
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWI   54 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~   54 (74)
                      ..|.|+ + ++++.+..|+++.|.|.|.|.|.|.+.|.
T Consensus         1 ~~P~f~-~-~~~~~v~~G~~v~l~C~~~g~p~p~~~~~   36 (96)
T d2c9aa1           1 RTPHFL-R-IQNVEVNAGQFATFQCSAIGRTVAGDRLW   36 (96)
T ss_dssp             SSCEEC-C-CCCEEECSSSCEEEEEEEESCCCSSCEEE
T ss_pred             CcCeec-c-cCCEEEeCCCEEEEEEEEeecCCCcEEEE
Confidence            369997 5 46677889999999999999999976653

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=4.7e-08  Score=57.01  Aligned_cols=44  Identities=11%  Similarity=0.203  Sum_probs=34.7

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCC-CeEEEEeCCCeeec
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPN-PEIIWIRSDGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~-P~I~W~~~dG~~i~   62 (74)
                      ..|.|... ++.+....|+.++|.|.|.|.|+ |+|+|++ ||.++.
T Consensus         5 ~~P~~~~~-~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k-~~~~l~   49 (93)
T d1n26a1           5 RCPAQEVA-RGVLTSLPGDSVTLTCPGVEPEDNATVHWVL-RKPAAG   49 (93)
T ss_dssp             CCCCCCCC-TTEEEECTTCCEEEECTTSCTTCCSEEEEEE-ECSSSS
T ss_pred             CCCcEEeC-CCCEEEeCCCcEEEEEEeecCCCCceEEEEE-cccccc
Confidence            45676665 66777888999999999999886 5999998 666653

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.44  E-value=2.8e-08  Score=57.11  Aligned_cols=44  Identities=16%  Similarity=0.265  Sum_probs=36.2

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCCce
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGLR   68 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~~r   68 (74)
                      .+|.+++++.+|+++.|.|.+ +.|.|.++|++ ||.++......+
T Consensus         5 ~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k-~g~~i~~~~~~~   48 (89)
T d1tiua_           5 EKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKL-KGQPLTASPDCE   48 (89)
T ss_dssp             SBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCS-SSCCCCSSSSCE
T ss_pred             EcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEE-eeeecccceeEE
Confidence            456788889999999999998 57999999985 888887655443

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.2e-07  Score=54.17  Aligned_cols=43  Identities=12%  Similarity=0.341  Sum_probs=34.5

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPG   66 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~   66 (74)
                      +.+|.+++....|+.+.|.|.++ .|.|.|.|++ ||.++...+.
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k-~~~~~~~~~~   45 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEVS-EDDANVKWFK-NGEEIIPGPK   45 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECS-SSSCCCEEEE-TTEECCCSTT
T ss_pred             EEcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEE-eecccCCCCC
Confidence            34567788889999999999995 5999999997 7877765443

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=7.8e-08  Score=55.35  Aligned_cols=33  Identities=27%  Similarity=0.554  Sum_probs=26.6

Q ss_pred             ecCCCCeEEEEEE-cccCCCeEEEEeCCCeeecCC
Q psy11558         31 FSNTTGAQVECTA-RGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        31 ~~~g~~v~L~C~A-~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      +..|+.++|.|.+ .|+|.|+|+|++ ||..+...
T Consensus        14 v~~G~~v~l~C~~~~g~p~p~v~W~~-~~~~i~~~   47 (104)
T d1nbqa2          14 ATIGNRAVLTCSEQDGSPPSEYTWFK-DGIVMPTN   47 (104)
T ss_dssp             EETTSCEEECCCCCSCBSCCEEEEEE-TTCCCCSC
T ss_pred             EecCCcEEEEEEeecCCCCCEEEEEE-CCEEccCC
Confidence            4568889999998 599999999997 66665443

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1e-07  Score=53.93  Aligned_cols=46  Identities=11%  Similarity=0.117  Sum_probs=32.5

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~   64 (74)
                      +|.+..+|+... +.+|+.++|.|.|.|+|.|...|...||..+...
T Consensus         1 KP~It~~P~~~~-v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~   46 (82)
T d1f2qa1           1 KPKVSLNPPWNR-IFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET   46 (82)
T ss_dssp             CCCCEEESSCSE-EETTCCEEEECCTTCC----CCEEEETTEECSCC
T ss_pred             CCEEEEcCCCeE-EeCCCeEEEEEEEeeeeeecceeeeeeeeeeecc
Confidence            478888876553 5678899999999999999876666788877543

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=7.2e-08  Score=56.99  Aligned_cols=33  Identities=9%  Similarity=0.139  Sum_probs=26.4

Q ss_pred             EecCCCCeEEEEEEcc-c--CCCeEEEEeCCCeeecC
Q psy11558         30 DFSNTTGAQVECTARG-S--PNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        30 ~~~~g~~v~L~C~A~G-~--P~P~I~W~~~dG~~i~~   63 (74)
                      .+..|..++|.|.|.| +  |.|+|+|++ ||.+|..
T Consensus        13 ~v~~G~~v~l~C~v~g~~p~p~~~i~W~~-~~~~i~~   48 (106)
T d1zxqa1          13 LVAVGKSFTIECRVPTVEPLDSLTLFLFR-GNETLHY   48 (106)
T ss_dssp             EECTTSEEEEEEEECSCBCGGGEEEEEEE-TTEEEEE
T ss_pred             EEeCCCEEEEEEEEeCcccCCCceEEEEc-CCEEeee
Confidence            4668889999999997 4  566899997 8887743

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.36  E-value=4.4e-07  Score=51.35  Aligned_cols=48  Identities=17%  Similarity=0.339  Sum_probs=36.5

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCe-EEEEeCCCeeecCCCCc
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPE-IIWIRSDGTAVGDVPGL   67 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~-I~W~~~dG~~i~~~~~~   67 (74)
                      +|.++..|+... +.+|+.++|.|.|.|+|.|. +.|+ +||..+....+.
T Consensus         4 kp~i~~~P~~~~-v~~G~~v~L~C~~~~~~~~~~~~w~-~~g~~~~~~~~~   52 (85)
T d2fcba1           4 KAVLKLEPQWIN-VLQEDSVTLTCRGTHSPESDSIQWF-HNGNLIPTHTQP   52 (85)
T ss_dssp             BCEEEEESCCSE-EETTCEEEEEEECSSCCCTTCCEEE-ETTEECTTCCSS
T ss_pred             CCEEEECCCCeE-EcCCCeEEEEEEEeeccceeEEEee-cccccccccccc
Confidence            578888876553 55788899999999999986 6565 589887655443

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.34  E-value=2.1e-07  Score=54.04  Aligned_cols=33  Identities=27%  Similarity=0.580  Sum_probs=26.5

Q ss_pred             ecCCCCeEEEEEEc-ccCCCeEEEEeCCCeeecCC
Q psy11558         31 FSNTTGAQVECTAR-GSPNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        31 ~~~g~~v~L~C~A~-G~P~P~I~W~~~dG~~i~~~   64 (74)
                      +..|+.+.|.|.|. |+|.|+|+|++ ||..+...
T Consensus        14 v~~G~~v~L~C~~~~g~p~~~v~W~~-~~~~~~~~   47 (110)
T d1f97a2          14 VTIGNRAVLTCSEHDGSPPSEYSWFK-DGISMLTA   47 (110)
T ss_dssp             EETTSCEEEEEECSCCBSCCEEEEEE-TTEESBC-
T ss_pred             EecCCeEEEEEEeecCCCCCEEEEEe-CCeEecCC
Confidence            35688899999995 99999999997 67766443

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.29  E-value=8.2e-07  Score=50.85  Aligned_cols=40  Identities=10%  Similarity=0.373  Sum_probs=29.4

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEc-ccCCCeEEEEeCCCeeecC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTAR-GSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~-G~P~P~I~W~~~dG~~i~~   63 (74)
                      +.+||..+ +.+|+.+.|.|.+. |.|.++++|++ ||..+..
T Consensus         6 ilq~p~~~-v~eG~~v~L~C~~~~~~p~~~~~W~k-ng~~~~~   46 (89)
T d1fnla2           6 LLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQ-NGKDRKY   46 (89)
T ss_dssp             EEECSCSE-EETTCCEEEEEEECTTCCCEEEEEEE-TTEEEEE
T ss_pred             EEECCCCe-EccCCeEEEEEEecCCCCCcEEEEEE-cccccce
Confidence            34455554 45788899999997 55677899996 7877653

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=6e-07  Score=52.75  Aligned_cols=40  Identities=13%  Similarity=0.489  Sum_probs=28.7

Q ss_pred             CcEEecCCCCeE---EEEEEcccCCCeEEEEeCCCeeecCCCCc
Q psy11558         27 NRIDFSNTTGAQ---VECTARGSPNPEIIWIRSDGTAVGDVPGL   67 (74)
Q Consensus        27 ~~v~~~~g~~v~---L~C~A~G~P~P~I~W~~~dG~~i~~~~~~   67 (74)
                      ..+....|..+.   +.|.+.|+|.|+|+|++ ||.+|......
T Consensus         5 ~~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~-ng~~l~~~~~~   47 (107)
T d1he7a_           5 ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLF-NGSVLNETSFI   47 (107)
T ss_dssp             CCCCCCCCCCCCEEEEEEEECCSSCCEEEEEE-TTEECCCCSSE
T ss_pred             CEeEECCCeEEEEEEEEEEEEEecCCeEEEEE-eeeEccCccce
Confidence            344455555555   55699999999999997 89888755443

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.27  E-value=1.3e-06  Score=49.80  Aligned_cols=38  Identities=13%  Similarity=0.324  Sum_probs=28.7

Q ss_pred             cCCCcEEecCCCCeEEEEEEccc-CCCeEEEEeCCCeeecC
Q psy11558         24 EPPNRIDFSNTTGAQVECTARGS-PNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        24 ~Pp~~v~~~~g~~v~L~C~A~G~-P~P~I~W~~~dG~~i~~   63 (74)
                      ++|+.+ +.+|+.++|.|.|.|. |.++++|++ ||..+..
T Consensus         6 q~p~~~-v~eG~~v~L~C~~~~~~p~~~~~W~k-~g~~~~~   44 (88)
T d2fcba2           6 QTPHLE-FQEGETIVLRCHSWKDKPLVKVTFFQ-NGKSKKF   44 (88)
T ss_dssp             ECSCSE-ECTTCCEEEEEEEGGGCCCEEEEEEE-TTEEEEE
T ss_pred             eCCCCe-EecCCeEEEEEEecCCCCCcEEEEEe-ecccccc
Confidence            345554 5678899999999754 677999996 7887754

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.22  E-value=1.9e-07  Score=55.80  Aligned_cols=29  Identities=21%  Similarity=0.381  Sum_probs=24.6

Q ss_pred             ecCCCCeEEEEEE-cccCCCeEEEEeCCCe
Q psy11558         31 FSNTTGAQVECTA-RGSPNPEIIWIRSDGT   59 (74)
Q Consensus        31 ~~~g~~v~L~C~A-~G~P~P~I~W~~~dG~   59 (74)
                      ..+|+.++|.|.| .|.|.|+|+|.++++.
T Consensus        14 ~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~   43 (111)
T d1biha2          14 PIEGRPFQLDCVLPNAYPKPLITWKKRLSG   43 (111)
T ss_dssp             CBTTEEEEECCCCCEEESCCEEEEEEEETT
T ss_pred             ccCCCeEEEEEEcccCCCCCEEEEEeCCcc
Confidence            4578899999998 8999999999985444

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=3.1e-06  Score=48.21  Aligned_cols=38  Identities=13%  Similarity=0.234  Sum_probs=28.5

Q ss_pred             CCCcEEecCCCCeEEEEEEccc-CCCeEEEEeCCCeeecCC
Q psy11558         25 PPNRIDFSNTTGAQVECTARGS-PNPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        25 Pp~~v~~~~g~~v~L~C~A~G~-P~P~I~W~~~dG~~i~~~   64 (74)
                      +|... +.+|+.++|.|.|.|. |.+++.|++ ||..+...
T Consensus         7 ~p~~~-V~eG~~v~L~C~~~~~~~~~~~~w~k-~g~~~~~~   45 (89)
T d1f2qa2           7 ASAEV-VMEGQPLFLRCHGWRNWDVYKVIYYK-DGEALKYW   45 (89)
T ss_dssp             ESCSE-EETTSCEEEEEEEGGGCCEEEEEEEE-TTEECCSC
T ss_pred             CCcCe-EeCCCEEEEEEEecCCCCCeEEEEEE-eeeccccc
Confidence            44443 4578889999999876 566899986 88887543

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=4.3e-06  Score=47.57  Aligned_cols=35  Identities=9%  Similarity=0.268  Sum_probs=27.8

Q ss_pred             EEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCC
Q psy11558         29 IDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVP   65 (74)
Q Consensus        29 v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~   65 (74)
                      ..+.+|++++|.|.|.| |.|.|+|.+ ||..+....
T Consensus        13 ~~v~~g~~v~l~C~~~~-~~~~v~W~~-~~~~l~~~~   47 (96)
T d1l6za2          13 TTVKELDSVTLTCLSND-IGANIQWLF-NSQSLQLTE   47 (96)
T ss_dssp             SEECTTSCEEEEECCCC-SSCEEEEEE-TTEECCCCT
T ss_pred             eEEeCCCeEEEEEccCC-CCCCEEEEE-eeeeccccc
Confidence            34678889999999988 669999997 788775543

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=4.4e-06  Score=48.90  Aligned_cols=44  Identities=11%  Similarity=0.191  Sum_probs=32.1

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC--eEEEEeCCCeeecC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP--EIIWIRSDGTAVGD   63 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P--~I~W~~~dG~~i~~   63 (74)
                      +|.+...|... .+..|+.++|.|.|.| .|.|  +|+|.+ |+..+..
T Consensus         4 P~~v~i~p~~~-~v~~G~~~~L~C~v~g~~P~p~~~v~W~~-~~~~l~~   50 (103)
T d1iama1           4 PERVELAPLPS-WQPVGKQLTLRCQVEGGAPRAQLTVVLLR-GEKELKR   50 (103)
T ss_dssp             CSEEEECCCCS-EECTTSEEEEEEEEECCBCGGGEEEEEEE-TTEEEEE
T ss_pred             CCceEEeCCCc-eEeCCCEEEEEEEecCCCCCCceEEEEcc-ccccccc
Confidence            55666676554 4678889999999997 5665  688986 6776643

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=5.9e-06  Score=48.73  Aligned_cols=32  Identities=13%  Similarity=0.325  Sum_probs=27.5

Q ss_pred             ecCCCCeEEEE------EEcccCCCeEEEEeCCCeeecC
Q psy11558         31 FSNTTGAQVEC------TARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        31 ~~~g~~v~L~C------~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      +..|.+++|.|      .+.|+|.|+|+|.+ ||.+|..
T Consensus        11 ~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~k-dg~~l~~   48 (103)
T d1iray2          11 LPVAGDGGLVCPYMEFFKNENNELPKLQWYK-DCKPLLL   48 (103)
T ss_dssp             EESSSCEEEECTTGGGGCBTTTBCCCCEEEE-TTEECCC
T ss_pred             EecCCCEEEEcCCccccccCCCCCCEEEEEE-CCccccC
Confidence            34677899999      78999999999997 8998864

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.9e-06  Score=48.76  Aligned_cols=32  Identities=13%  Similarity=0.356  Sum_probs=26.1

Q ss_pred             EecCCCCeEEEEEEcccCCCeEEEEeCCCeeecC
Q psy11558         30 DFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGD   63 (74)
Q Consensus        30 ~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~   63 (74)
                      .+.+|+++.|+|.+.| |.|.+.|.+ ||..+..
T Consensus         8 ~~~~G~~~~l~C~~~g-~~~~v~W~~-~g~~l~~   39 (92)
T d1olza1           8 FFKHGGTAELKCSQKS-NLARVFWKF-QNGVLKA   39 (92)
T ss_dssp             EEETTSCEEECCCCSC-TTCEEEEEE-SSSBCCC
T ss_pred             eEeCCCEEEEEEEeec-cCCceeeec-Cccccee
Confidence            4668889999999999 889999997 5655543

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.3e-06  Score=49.71  Aligned_cols=46  Identities=17%  Similarity=0.294  Sum_probs=32.2

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccC-CCeEEEEeCCCeeecCC
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSP-NPEIIWIRSDGTAVGDV   64 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P-~P~I~W~~~dG~~i~~~   64 (74)
                      ..+|.+. .|+. +....|+.+.|.|.+.|.| .|.+.|++ +|..+...
T Consensus         5 ~~Pp~i~-~~~~-~~~~~G~~~~l~C~v~~~~p~~~v~W~~-~~~~i~~~   51 (115)
T d2crya1           5 NGPPIIS-STQT-QHALHGEKGQIKCFIRSTPPPDRIAWSW-KENVLESG   51 (115)
T ss_dssp             CSSCCEE-EECC-CCCCTTSCCCCCEEECCSSCCSEEEEES-SSCEECSE
T ss_pred             ecCCEEe-cCCC-EEEecCCEEEEEEEeecCCCeeEEEEee-eeeeEeee
Confidence            3566665 3343 3456788899999999965 66899996 66666543

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=3e-05  Score=44.91  Aligned_cols=28  Identities=21%  Similarity=0.736  Sum_probs=22.8

Q ss_pred             CCCeEEEEEEcc-cCCCeEEEEeCCCeeec
Q psy11558         34 TTGAQVECTARG-SPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        34 g~~v~L~C~A~G-~P~P~I~W~~~dG~~i~   62 (74)
                      +..+.|.|.|.| .|+|+|+|++ ||..+.
T Consensus        16 ~~~~~L~C~~~g~~P~~~V~W~~-n~~~~~   44 (95)
T d1dr9a2          16 SNIRRIICSTSGGFPEPHLSWLE-NGEELN   44 (95)
T ss_dssp             TTEEEEEEEEEEESSCEEEEEEE-SSCEEC
T ss_pred             CCEEEEEEEECcccCCCEEEEec-CCcEec
Confidence            445899999998 6999999996 676654

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=2.1e-05  Score=45.67  Aligned_cols=33  Identities=15%  Similarity=0.197  Sum_probs=27.2

Q ss_pred             CCcEEecCCCCeEEEEEEc-ccCCCeEEEEeCCC
Q psy11558         26 PNRIDFSNTTGAQVECTAR-GSPNPEIIWIRSDG   58 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~-G~P~P~I~W~~~dG   58 (74)
                      |..+...+|+.+.|.|.+. |.|.|+|+|+++++
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~   42 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDS   42 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSST
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCc
Confidence            4556678898999999885 88999999997543

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.0002  Score=41.68  Aligned_cols=45  Identities=22%  Similarity=0.459  Sum_probs=29.4

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~   62 (74)
                      .+|....-+|..-+...+..++|.|.|.| .|.. +|+|.+ ||..+.
T Consensus         3 ~~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~-~g~~~~   49 (108)
T d1ow0a2           3 FRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQ-GSQELP   49 (108)
T ss_dssp             CCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEE-TTEECC
T ss_pred             CCCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEE-CCeEcC
Confidence            34543333333323445667999999999 5755 899986 787664

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.15  E-value=0.0012  Score=39.52  Aligned_cols=34  Identities=21%  Similarity=0.493  Sum_probs=28.0

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      +++|+..+....|.+++|.|.++|..  .-.+.|++
T Consensus         4 l~Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYr   39 (123)
T d1hxmb1           4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYR   39 (123)
T ss_dssp             EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEE
T ss_pred             eECCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEE
Confidence            46677778888899999999999864  55799997

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.0006  Score=39.46  Aligned_cols=41  Identities=17%  Similarity=0.242  Sum_probs=28.7

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcc-cCC--CeEEEEeCCCeeec
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARG-SPN--PEIIWIRSDGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~--P~I~W~~~dG~~i~   62 (74)
                      ..|.+....+    +..|+.++|.|.|.| .|.  ++|+|.+ |+..+.
T Consensus         3 ~~P~I~~~~~----l~~G~~~~l~C~v~~~~P~~~~~i~W~~-g~~~~~   46 (109)
T d1vcaa1           3 KDPEIHLSGP----LEAGKPITVKCSVADVYPFDRLEIDLLK-GDHLMK   46 (109)
T ss_dssp             SCCEEEESSC----EETTSCEEEEEEEEEEBSGGGEEEEEEE-TTEEEE
T ss_pred             CCCEEecCCC----ccCCCeEEEEeEeCCcCCCCceEEEEec-cCceee
Confidence            3566655432    347889999999996 674  4799996 676654

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.06  E-value=0.0012  Score=38.96  Aligned_cols=34  Identities=18%  Similarity=0.453  Sum_probs=27.8

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      .+|.| ..+....|++|+|+|...+.-...+.|++
T Consensus         4 v~Q~P-~~~~~~~G~~v~L~C~~~~~~~~~~~WYr   37 (118)
T d2ij0c1           4 VSQHP-SMVIVKSGTSVKIECRSLDTNIHTMFWYR   37 (118)
T ss_dssp             EEEEC-SEEEECTTCCEEEEEEECSSCCSEEEEEE
T ss_pred             EEEcC-CeEEEcCCCCEEEEEEEcCCcccEEEEEE
Confidence            45664 45557889899999999998889999997

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.05  E-value=0.0014  Score=39.14  Aligned_cols=34  Identities=24%  Similarity=0.419  Sum_probs=27.4

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      +++|+..+....|++|+|.|.+.|.-  ...+.|++
T Consensus         4 l~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYr   39 (120)
T d1ypzf1           4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYR   39 (120)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEE
T ss_pred             eEcCCCEEEecCCCcEEEEEEEecccccCCcccEEE
Confidence            45667777788899999999998764  57799997

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.98  E-value=0.0017  Score=37.87  Aligned_cols=32  Identities=16%  Similarity=0.331  Sum_probs=27.6

Q ss_pred             cCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         24 EPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        24 ~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      ++|..+...+|+.|+|+|..++.-.+.+.|++
T Consensus         5 Q~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYr   36 (115)
T d1j8hd1           5 QLGSHVSVSEGALVLLRCNYSSSVPPYLFWYV   36 (115)
T ss_dssp             CSCSEEEEETTSCEEECCEEECSSCCEEEEEE
T ss_pred             cCCCeEEEcCCCCEEEEEEeCCCCceeEEEEE
Confidence            34677778899999999999988888999997

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.98  E-value=0.0015  Score=38.08  Aligned_cols=31  Identities=16%  Similarity=0.446  Sum_probs=26.8

Q ss_pred             CCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         26 PNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      |..+...+|++|+|.|...+.+...+.|++-
T Consensus         7 P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq   37 (114)
T d2cdea1           7 PQSLIILEGKNCTLQCNYTVSPFSNLRWYKQ   37 (114)
T ss_dssp             CSEEEEETTCCCEEEEEECCSCCSEEEEEEE
T ss_pred             CCEEEEeCCCCEEEEEEEcCCCccCceEEEe
Confidence            5566678899999999999989999999974

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.96  E-value=0.00091  Score=39.72  Aligned_cols=37  Identities=19%  Similarity=0.331  Sum_probs=30.6

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      +|...+.|+ .+....|++++|.|.+.++..+.+.|++
T Consensus         1 a~~~~~~P~-~~~~~~G~~vtL~C~~~~~~~~~v~Wyr   37 (122)
T d1nezg_           1 APELRIFPK-KMDAELGQKVDLVCEVLGSVSQGCSWLF   37 (122)
T ss_dssp             CCEEEEESS-CEEECTTCCEEEEEEEESCCSSCEEEEE
T ss_pred             CCceEEcCC-EEEECCCCCEEEEEEEcCccCCCEEEEE
Confidence            366667754 4567889999999999999999999987

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.91  E-value=0.0016  Score=38.03  Aligned_cols=34  Identities=12%  Similarity=0.365  Sum_probs=28.7

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      .++|..+.+.+|+.|+|.|..+....+.+.|++.
T Consensus         5 ~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq   38 (115)
T d1lp9e1           5 TQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQ   38 (115)
T ss_dssp             EECCSEEEEETTSCEEECEEEECSSSCCEEEEEE
T ss_pred             EcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEe
Confidence            3446777788999999999999999999999873

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.89  E-value=0.0023  Score=37.24  Aligned_cols=34  Identities=24%  Similarity=0.535  Sum_probs=28.8

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      +.+||..+.+..|++|+|.|...+.-.+.+.|++
T Consensus         3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyr   36 (115)
T d1i9ea_           3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYV   36 (115)
T ss_dssp             EECCCSEEEEETTSCEEECCEEECSSCCEEEEEE
T ss_pred             EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEE
Confidence            3456777788899999999999988888999997

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.0011  Score=37.83  Aligned_cols=28  Identities=21%  Similarity=0.526  Sum_probs=22.4

Q ss_pred             CCCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558         34 TTGAQVECTARG-SPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        34 g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~   62 (74)
                      |..++|.|.|.| .|.. .|+|.+ ||..+.
T Consensus        15 ~~~~tL~C~~~gFyP~~i~v~W~~-ng~~~~   44 (94)
T d1t7va1          15 GEKKKLKCLAYDFYPGKIDVHWTR-AGEVQE   44 (94)
T ss_dssp             TSCEEEEEEEEEEBSSCEEEEEEE-TTEECC
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEE-CCEECC
Confidence            456999999999 7754 899996 787654

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00072  Score=39.01  Aligned_cols=28  Identities=18%  Similarity=0.542  Sum_probs=22.7

Q ss_pred             CCCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558         34 TTGAQVECTARG-SPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        34 g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~   62 (74)
                      ++.++|.|.|+| .|.. +|+|++ ||+.+.
T Consensus        15 ~~~~tL~C~~~gFyP~~i~v~W~~-dg~~~~   44 (94)
T d1de4a1          15 SSVTTLRCRALNYYPQNITMKWLK-DKQPMD   44 (94)
T ss_dssp             SSCEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             CCCEEEEEEEeeEECCCCEEEEEE-CCEECc
Confidence            446899999999 6866 999986 788763

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.86  E-value=0.0022  Score=37.20  Aligned_cols=33  Identities=15%  Similarity=0.382  Sum_probs=27.8

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      ++. |..+....|++|+|+|...+...+.+.|++
T Consensus         4 ~Q~-P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyr   36 (113)
T d2bnqd1           4 TQI-PAALSVPEGENLVLNCSFTDSAIYNLQWFR   36 (113)
T ss_dssp             ECS-SSEEEEETTCCEEEEEEESCCCEEEEEEEE
T ss_pred             Eee-CCEEEEcCCCCEEEEEEEecCcccCCeEEE
Confidence            344 566778889999999999998889999997

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00044  Score=38.34  Aligned_cols=31  Identities=16%  Similarity=0.244  Sum_probs=24.3

Q ss_pred             EEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         29 IDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        29 v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      +....|++|+|+|.+ +.|.+.|.|.+ ++..+
T Consensus         5 v~~~~G~sVtl~c~~-~~p~~~v~W~~-~~~~i   35 (93)
T d1ccza1           5 IYGVVYGNVTFHVPS-NVPLKEVLWKK-QKDKV   35 (93)
T ss_dssp             EEEETTCCEEECCCC-SSCCSCEEEEE-TTEEE
T ss_pred             EEEEECCCEEEEecC-CCCCcEEEEEE-ecccc
Confidence            445678889999986 46999999997 55544

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.80  E-value=0.0033  Score=36.30  Aligned_cols=33  Identities=21%  Similarity=0.512  Sum_probs=27.7

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      .+|| .+.+..|++++|.|.+++.-...+.|++-
T Consensus         5 tQp~-s~~~~~G~svtL~C~~s~~~~~~~~WYrq   37 (106)
T d1lk3l1           5 TQPP-ALTVSPGEKLTISCKASESVTSRMHWYQQ   37 (106)
T ss_dssp             ECCS-EEEECTTSCEEEEEEESSCCTTCEEEEEE
T ss_pred             eeCC-eEEECCCCCEEEEEEeCCCCCccEEEEec
Confidence            4455 57788999999999999888889999973

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.78  E-value=0.0042  Score=35.94  Aligned_cols=33  Identities=15%  Similarity=0.388  Sum_probs=26.3

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccC-CCeEEEEe
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSP-NPEIIWIR   55 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P-~P~I~W~~   55 (74)
                      +++|+ .+...+|++|+|.|.++|.. ...+.|++
T Consensus         2 t~qP~-~~~~~~G~svtl~C~~s~~~~~~~~~WYr   35 (112)
T d1kgcd1           2 TTQPN-SMESNEEEPVHLPCNHSTISGTDYIHWYR   35 (112)
T ss_dssp             EECCS-EEEEETTSCEEEEEEESCCCTTCCEEEEE
T ss_pred             eECCC-EEEECCCCCEEEEEEEeCCCccccEEEEE
Confidence            45655 56788999999999998755 57799998

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.77  E-value=0.0017  Score=37.63  Aligned_cols=34  Identities=24%  Similarity=0.557  Sum_probs=26.4

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcc-cCCCeEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARG-SPNPEIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G-~P~P~I~W~~~   56 (74)
                      ++. |..+...+|++|+|+|.+++ .....+.|++-
T Consensus         2 ~Q~-P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq   36 (115)
T d2atpb1           2 IQT-PSSLLVQTNHTAKMSCEVKSISKLTSIYWLRE   36 (115)
T ss_dssp             EEE-CSEEEECTTSCEEEEEECCSSCCSSEEEEEEE
T ss_pred             Eee-CCcEEEcCCCCEEEEEEEeCCCCCCceEEEEe
Confidence            455 45556788999999999998 45778999863

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.0012  Score=38.27  Aligned_cols=27  Identities=30%  Similarity=0.763  Sum_probs=21.8

Q ss_pred             CCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558         35 TGAQVECTARG-SPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        35 ~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~   62 (74)
                      ..+.|-|.|.| .|.. +|+|++ ||..+.
T Consensus        22 ~tv~L~Cl~~~f~P~~i~v~W~~-~g~~~~   50 (104)
T d1o0va1          22 PTIQLLCLVSGYTPGTIQITWLE-DGQVMD   50 (104)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEE-TTEECC
T ss_pred             CeEEEEEEEEEEECCCcEEEEEE-CCEEcc
Confidence            34889999999 7776 699996 787764

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.69  E-value=0.0064  Score=34.99  Aligned_cols=32  Identities=9%  Similarity=0.230  Sum_probs=26.8

Q ss_pred             CCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         25 PPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        25 Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      .|..+...+|++++|.|...+.-.+.+.|++-
T Consensus         6 ~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq   37 (111)
T d1bd2d1           6 NSPSLSVQEGRISILNCDYTNSMFDYFLWYKK   37 (111)
T ss_dssp             CCSEEEEETTSCEEEEEEECCTTCCEEEEEEE
T ss_pred             cCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEE
Confidence            34556678899999999999999999999973

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=96.68  E-value=0.0027  Score=36.90  Aligned_cols=43  Identities=16%  Similarity=0.319  Sum_probs=28.8

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEccc-C-CCeEEEEeCCCeeec
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGS-P-NPEIIWIRSDGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P-~P~I~W~~~dG~~i~   62 (74)
                      .+|....-|+..+  ..+..++|.|.|.|- | .-.|+|.+ ||.++.
T Consensus         4 v~P~V~v~~~~~~--~~~~~~tL~C~v~gF~P~~i~v~W~~-ng~~~~   48 (101)
T d1fnga1           4 VAPEVTVLSRSPV--NLGEPNILICFIDKFSPPVVNVTWLR-NGRPVT   48 (101)
T ss_dssp             BCCEEEEEESSCC--CTTSCEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             cCCeEEEeCCCcc--cCCCCEEEEEEEEeEECCCCEEEEEE-CCeecC
Confidence            3554444344442  345568999999997 6 44899996 888765

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.0025  Score=36.91  Aligned_cols=31  Identities=19%  Similarity=0.456  Sum_probs=23.9

Q ss_pred             cCCCCeEEEEEEccc-C-CCeEEEEeCCCeeecC
Q psy11558         32 SNTTGAQVECTARGS-P-NPEIIWIRSDGTAVGD   63 (74)
Q Consensus        32 ~~g~~v~L~C~A~G~-P-~P~I~W~~~dG~~i~~   63 (74)
                      ..|..++|.|.|.|- | .-.|+|.+ ||..+..
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~-ng~~v~~   49 (100)
T d1k5nb_          17 ENGKSNFLNCYVSGFHPSDIEVDLLK-NGERIEK   49 (100)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEE-TTEECTT
T ss_pred             cCCCCEEEEEEECccCCCCcEEEEEE-CCEecCC
Confidence            356678999999996 5 44789996 8887753

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.63  E-value=0.0047  Score=35.73  Aligned_cols=35  Identities=17%  Similarity=0.363  Sum_probs=28.4

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      .+|. |..+....|++|+|.|.+.+.-...+.|++-
T Consensus         3 ltQ~-P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq   37 (106)
T d1op3k1           3 MTQS-PSTLSASVGDTITITCRASQSIETWLAWYQQ   37 (106)
T ss_dssp             EEEE-CSEEEECTTCEEEEEEEESSCCTTCEEEEEE
T ss_pred             EeCc-CCeEEECCCCCEEEEEEeCCCCCCcEEEEec
Confidence            4566 5666688899999999999877788999974

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=96.61  E-value=0.0019  Score=37.56  Aligned_cols=43  Identities=19%  Similarity=0.313  Sum_probs=30.5

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEccc-C-CCeEEEEeCCCeeec
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGS-P-NPEIIWIRSDGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P-~P~I~W~~~dG~~i~   62 (74)
                      ++|....-|+..+  ..+..++|.|.|.|- | .-.|+|.+ ||..+.
T Consensus         2 ~pP~V~v~p~~~~--~~~~~~tL~C~v~gFyP~~i~v~W~~-ng~~v~   46 (100)
T d1muja1           2 EAPQATVFPKSPV--LLGQPNTLICFVDNIFPPVINITWLR-NSKSVA   46 (100)
T ss_dssp             CCCEEEEEESSCC--CTTSCEEEEEEEEEECSSCCEEEEEE-SSSBCC
T ss_pred             CCCEEEEEcCCcc--ccCCCEEEEEEEEeEECCCCEEEEEe-CCeecc
Confidence            4566555555543  345679999999996 4 67899985 787764

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.55  E-value=0.0026  Score=36.40  Aligned_cols=36  Identities=22%  Similarity=0.253  Sum_probs=25.3

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccC---CCeEEEEeCCC
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSP---NPEIIWIRSDG   58 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P---~P~I~W~~~dG   58 (74)
                      ..|.+.+....|++|+|.|...+.+   ...|.|.+.++
T Consensus         6 ~~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~   44 (126)
T d1pkoa_           6 IGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPF   44 (126)
T ss_dssp             ECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--
T ss_pred             ECCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCC
Confidence            4455557777899999999976433   45699998643

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.54  E-value=0.0069  Score=35.01  Aligned_cols=34  Identities=18%  Similarity=0.422  Sum_probs=27.4

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      +|. |..+....|++|+|.|..+..-.+.+.|++.
T Consensus         5 tQ~-P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq   38 (107)
T d1tjgl1           5 TQS-PSSLSASVGDRITITCRASQGVTSALAWYRQ   38 (107)
T ss_dssp             EEE-CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             Eee-CCEEEECCCCCEEEEEEECCCCCccEEEEec
Confidence            466 4555678899999999999777889999983

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.53  E-value=0.0013  Score=37.93  Aligned_cols=40  Identities=25%  Similarity=0.422  Sum_probs=25.5

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcc-cCCC---eEEEEeCCCeee
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARG-SPNP---EIIWIRSDGTAV   61 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P---~I~W~~~dG~~i   61 (74)
                      ++.-|.....+..+.+++|.|.|.| .|.+   +|+|.+ ||..+
T Consensus         3 ~l~pPs~~~~~~~~~t~~l~Clv~~f~p~~~~v~v~W~~-~g~~~   46 (103)
T d1i1ca1           3 FIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFI-DDVEV   46 (103)
T ss_dssp             EEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEE-SSCEE
T ss_pred             EEECcChHHHhccCCCcEEEEEEEeeECCCCCEEEEEEE-CCccc
Confidence            4444422222445556999999999 5665   789997 55544

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.52  E-value=0.0049  Score=35.94  Aligned_cols=33  Identities=18%  Similarity=0.442  Sum_probs=25.6

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEccc-CCCeEEEEe
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGS-PNPEIIWIR   55 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~-P~P~I~W~~   55 (74)
                      ++. |..+...+|++|+|+|++.+. ..+.+.|++
T Consensus         4 tQ~-p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyr   37 (116)
T d1tvda_           4 TQS-SPDQTVASGSEVVLLCTYDTVYSNPDLFWYR   37 (116)
T ss_dssp             ECC-SCCEEEETTCCEEECCEEECCSSSCCEEEEE
T ss_pred             Ecc-CCCEEEcCCCCEEEEEEEcCCccCCcEEEEE
Confidence            344 455567889999999998654 688999986

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.50  E-value=0.0069  Score=34.76  Aligned_cols=33  Identities=15%  Similarity=0.423  Sum_probs=27.8

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      +|. |..+....|++|+|.|..+++-...+.|++
T Consensus         5 tQs-P~~l~v~~G~svtl~C~~s~~~~~~~~WYr   37 (107)
T d1kcvl1           5 TQS-PKSMGMSVGEAVTLNCKASENVGTYVSWYQ   37 (107)
T ss_dssp             EES-CSEEEEETTCCEEEEEEESSCCTTCEEEEE
T ss_pred             ECc-CCEEeECCCCCEEEEEEecCCcCCceEEEE
Confidence            466 466667889999999999998888999997

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.47  E-value=0.0055  Score=35.38  Aligned_cols=33  Identities=15%  Similarity=0.398  Sum_probs=27.1

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      +|. |..+....|++|+|.|....+-...+.|++
T Consensus         4 tQ~-p~~~~~~~G~~vtl~C~~~~~~~~~~~WYr   36 (110)
T d1ac6a_           4 TQT-EGQVALSEEDFLTIHCNYSASGYPALFWYV   36 (110)
T ss_dssp             EEC-CSEEEEETTEEEEECEEEECSSCCEEEEEE
T ss_pred             EeC-CCeEEECCCCCEEEEEEecCCCCcceEEEE
Confidence            344 566678899999999998887778899997

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.002  Score=36.98  Aligned_cols=44  Identities=20%  Similarity=0.431  Sum_probs=28.5

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~   62 (74)
                      .+|....-||..-...+ ..++|.|.|.| .|.. +|+|++ ||..+.
T Consensus         4 ~~P~V~~~~ps~~~~~~-~~~tL~C~v~~f~P~~i~v~W~~-~g~~~~   49 (102)
T d1rzfl2           4 AAPSVTLFPPSSEELQA-NKATLVCLISDFYPGAVTVAWKA-DSSPVK   49 (102)
T ss_dssp             BCCEEEEECCCHHHHHT-TCEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             CCCEEEEECCCHHHhcC-CcEEEEEEEEeeCCCCeEEEEEE-CCEECC
Confidence            35544444454433333 45999999999 5644 799996 787664

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.40  E-value=0.01  Score=34.32  Aligned_cols=32  Identities=13%  Similarity=0.334  Sum_probs=26.9

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      |. |..+....|++|+|+|..++.-.-.+.|++
T Consensus         6 Qs-P~~ltv~~G~svtl~C~~s~~~~~~~~WYr   37 (107)
T d1ospl1           6 QS-SSSFSVSLGDRVTITCKASEDIYSRLAWYQ   37 (107)
T ss_dssp             CC-CSEEEECTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             ee-CCEEEECCCCCEEEEEecCCCcccccEEEE
Confidence            44 566678889999999999988777899998

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.40  E-value=0.0011  Score=38.21  Aligned_cols=32  Identities=28%  Similarity=0.653  Sum_probs=26.9

Q ss_pred             cCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         24 EPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        24 ~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      +|+ .+.+.+|++|+|+|.+++.....+.|++-
T Consensus         4 Qp~-sl~~~~G~svtl~C~~~~~~~~~~~WYrQ   35 (103)
T d8faba1           4 QPP-SVSVSPGQTARITCSANALPNQYAYWYQQ   35 (103)
T ss_dssp             CCS-EEEECTTSCEEEEEECTTGGGSCCEEEEE
T ss_pred             CCC-eEEECCCCCEEEEEEeCCCCCCCEEEEEc
Confidence            355 67788999999999999888888999973

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.39  E-value=0.0073  Score=34.84  Aligned_cols=34  Identities=15%  Similarity=0.306  Sum_probs=27.8

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      +|. |..+...+|++|+|.|..++.-...+.|++-
T Consensus         7 tQs-P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq   40 (109)
T d1bwwa_           7 TQS-PSSLSASVGDRVTITCQASQDIIKYLNWYQQ   40 (109)
T ss_dssp             EEE-CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             Eee-CCEEEECCCCCEEEEEEecCCCCCcceEeee
Confidence            455 4566688899999999999887888999973

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.39  E-value=0.0051  Score=35.15  Aligned_cols=30  Identities=20%  Similarity=0.382  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEEccc-C-CCeEEEEeCCCeeecC
Q psy11558         33 NTTGAQVECTARGS-P-NPEIIWIRSDGTAVGD   63 (74)
Q Consensus        33 ~g~~v~L~C~A~G~-P-~P~I~W~~~dG~~i~~   63 (74)
                      +|..++|.|.|.|- | .-.|+|++ ||..+..
T Consensus        17 ~~~~~tL~C~v~gf~P~~i~V~W~~-~g~~~~~   48 (99)
T d1lk2b_          17 NGKPNILNCYVTQFHPPHIEIQMLK-NGKKIPK   48 (99)
T ss_dssp             TTSCEEEEEEEEEEBSSCCEEEEEE-TTEECTT
T ss_pred             CCCcEEEEEEEEEEECCCcEEEEee-CCeecCC
Confidence            56669999999995 4 44799986 7877654

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.36  E-value=0.0071  Score=34.97  Aligned_cols=34  Identities=18%  Similarity=0.364  Sum_probs=27.8

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      +|. |..+...+|++|+|+|.++.+....+.|++.
T Consensus         5 tQ~-P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq   38 (107)
T d1d5il1           5 TQS-PSSMYASLGERVTITCKASQDINSYLSWFQQ   38 (107)
T ss_dssp             EEE-CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             Eee-CCEEEECCCCCEEEEEEcCCCCCCccceeEe
Confidence            455 4566678899999999999888888999973

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.35  E-value=0.01  Score=34.53  Aligned_cols=34  Identities=12%  Similarity=0.330  Sum_probs=25.8

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccC-----CCeEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSP-----NPEIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P-----~P~I~W~~~   56 (74)
                      +|. |..+.+.+|++|+|+|.++|+-     ...+.|++-
T Consensus         5 TQ~-p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq   43 (112)
T d1mjul1           5 TQA-APSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQ   43 (112)
T ss_dssp             ECC-CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             Eec-CCEEEECCCCCEEEEEEECCCCccCCCCceeEEEEC
Confidence            444 5556678899999999998853     457999863

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.34  E-value=0.0078  Score=34.73  Aligned_cols=34  Identities=18%  Similarity=0.314  Sum_probs=27.8

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      +|. |..+.+..|++|+|.|..+......+.|++-
T Consensus         4 tQs-P~~l~~~~G~svtl~C~~s~~~~~~~~WYrq   37 (106)
T d1a0ql1           4 TQS-PSSLSASLGGKVTITCKASQDIKKYIGWYQH   37 (106)
T ss_dssp             EEE-CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             ECc-CCEEEECCCCCEEEEEEcCCCCCCCeEEEEC
Confidence            455 4566678999999999999888888999974

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.004  Score=35.56  Aligned_cols=42  Identities=19%  Similarity=0.586  Sum_probs=27.3

Q ss_pred             cc-eEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558         18 GP-IFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        18 ~P-~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~   62 (74)
                      .| +++..| ...+.. +..+.|.|.|.| .|.. +|+|.+ ||....
T Consensus         4 ~P~V~i~~p-s~~~~~-~~~~tL~Clv~gf~P~~i~v~W~~-~g~~~~   48 (102)
T d1l6xa2           4 EPQVYTLPP-SRDELT-KNQVSLTCLVKGFYPSDIAVEWES-NGQPEN   48 (102)
T ss_dssp             CCEEEEECC-CGGGGG-SSEEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             CCEEEEECc-CHHHhc-CCceEEEEEEEEeECCCCEEEEEE-CCEECC
Confidence            45 455544 332333 345999999999 5643 899996 776644

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.28  E-value=0.011  Score=33.94  Aligned_cols=33  Identities=12%  Similarity=0.337  Sum_probs=25.6

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      .+|.| ..+....|++++|+|..++ -...+.|++
T Consensus         4 V~Q~P-~~~~~~~G~~vtl~C~~s~-~~~~~~WYr   36 (110)
T d2aq2a1           4 VTQSP-RNKVAVTGEKVTLSCQQTN-NHNNMYWYR   36 (110)
T ss_dssp             EEEEC-SEEEECTTCCEEEEEEESS-CCSEEEEEE
T ss_pred             EEEeC-CeEEEcCCCCEEEEEEECC-CcCcEEEEE
Confidence            35664 4555778889999999886 478999997

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.26  E-value=0.0036  Score=36.63  Aligned_cols=34  Identities=18%  Similarity=0.367  Sum_probs=27.8

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      +|. |..+....|++|+|.|.+++.....+.|++-
T Consensus         5 tQ~-P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq   38 (108)
T d1jhll_           5 TQS-PSYLVASPGETITINCRASKSISKSLAWYQE   38 (108)
T ss_dssp             EEE-CSEEEECTTSCEEEEEEESSCCTTCEEEEEE
T ss_pred             Ecc-CCeEEecCCCCEEEEEEccCCcCCceEEEEc
Confidence            455 4556678899999999999888889999974

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=96.26  E-value=0.0055  Score=35.26  Aligned_cols=35  Identities=23%  Similarity=0.471  Sum_probs=26.7

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEccc-CCCeEEEEeC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGS-PNPEIIWIRS   56 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~P~I~W~~~   56 (74)
                      .+|. |..+....|++++|.|.+.+. ....+.|++-
T Consensus         4 ltQ~-P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq   39 (108)
T d2fx7l1           4 LTQS-PGTQSLSPGERATLSCRASQSVGNNKLAWYQQ   39 (108)
T ss_dssp             EECS-SSEEEECTTCCEEEEEEESSCCGGGCEEEEEE
T ss_pred             EEee-CCeEEECCCCCEEEEEEeecCCCCccceeEec
Confidence            3455 466678889999999998765 3567999974

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.25  E-value=0.004  Score=35.34  Aligned_cols=27  Identities=26%  Similarity=0.532  Sum_probs=21.5

Q ss_pred             CCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558         35 TGAQVECTARG-SPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        35 ~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~   62 (74)
                      ..+.|.|.|.| .|.. +|+|.+ ||..+.
T Consensus        16 ~~~~L~C~~~gF~P~~i~v~W~~-ng~~~~   44 (91)
T d3frua1          16 GSSVLTCAAFSFYPPELKFRFLR-NGLASG   44 (91)
T ss_dssp             TEEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             CCEEEEEEEEeEECCCCEEEEEE-CCEeCC
Confidence            35999999999 5754 799996 787754

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.23  E-value=0.015  Score=33.62  Aligned_cols=31  Identities=16%  Similarity=0.347  Sum_probs=26.1

Q ss_pred             CCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         25 PPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        25 Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      +|..+....|++|+|+|.++.+-...+.|++
T Consensus         7 ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYr   37 (107)
T d1mexl1           7 SQKFMSTSLGNRVSVTCKASQNVGTNVAWFQ   37 (107)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCTTCEEEEE
T ss_pred             CCCeEEECCCCCEEEEEEeCCCCCCceEEEe
Confidence            3566678889999999999877777899997

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.23  E-value=0.0043  Score=35.95  Aligned_cols=33  Identities=9%  Similarity=0.420  Sum_probs=27.7

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      +|. |..+.+..|++|+|.|..+++-...+.|++
T Consensus         5 tQs-P~slsv~~G~svtl~C~~s~~~~~~~~WYr   37 (106)
T d1i8ka_           5 TQS-PASLSVATGEKVTIRCMTSTDIDDDMNWYQ   37 (106)
T ss_dssp             EEE-CSEEECCTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             Eee-CCEEEECCCCCEEEEEEeCCCCCccEEEEe
Confidence            466 466678899999999999988888899996

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.20  E-value=0.011  Score=34.05  Aligned_cols=34  Identities=15%  Similarity=0.419  Sum_probs=28.0

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      +|. |..+.+..|++|+|+|..+..-...+.|++.
T Consensus         5 tQ~-p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq   38 (107)
T d1j1pl_           5 TQS-PATLSVTPGNSVSLSCRASQSIGNNLHWYQQ   38 (107)
T ss_dssp             EEE-CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             ECc-CCeEEECCCCCEEEEEEecCCCCcceEEEEe
Confidence            455 5566688899999999998888889999974

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.18  E-value=0.014  Score=33.82  Aligned_cols=34  Identities=15%  Similarity=0.336  Sum_probs=28.3

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      .+|.| ..+...+|++|+|.|..+..-...+.|++
T Consensus         4 ltQsP-~~l~~~~G~svtL~C~~s~~~~~~i~WYr   37 (109)
T d1mqkl_           4 LTQTP-VSLSASVGETVTITCRASENIYSYLAWYQ   37 (109)
T ss_dssp             EEEEC-SEEEECTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             EECcC-CEEEECCCCCEEEEEEeCCCcCcccceee
Confidence            45674 56667889999999999988888899998

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.17  E-value=0.0042  Score=36.29  Aligned_cols=33  Identities=12%  Similarity=0.343  Sum_probs=27.7

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      +|. |..+....|++|+|+|..+......+.|++
T Consensus         5 tQ~-P~s~~~~~G~svtl~C~~s~~~~~~~~Wyr   37 (107)
T d1c5cl1           5 TQS-PSSLSASLGERVSLTCRTSQEISGYLSWLQ   37 (107)
T ss_dssp             EEE-CSEEEECTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             Ecc-CCEEEECCCCCEEEEEEeCCCCCCCEEEEE
Confidence            455 456667889999999999998888899997

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.13  E-value=0.013  Score=33.76  Aligned_cols=36  Identities=14%  Similarity=0.363  Sum_probs=28.1

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      ...|.|+ .+...+|++++|+|...+.=...+.|++-
T Consensus         3 ~V~Q~P~-~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ   38 (112)
T d1fo0b_           3 LLEQNPR-WRLVPRGQAVNLRCILKNSQYPWMSWYQQ   38 (112)
T ss_dssp             SEEEECS-EEECCTTCCEEEEEEESCTTCCEEEEEEE
T ss_pred             eEEeCCC-eEEECCCCCEEEEEEEecCCCCcEEEEeE
Confidence            3456654 44567888999999998877789999984

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.11  E-value=0.014  Score=33.07  Aligned_cols=33  Identities=15%  Similarity=0.329  Sum_probs=26.2

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      |. |..+....|++++|+|...+.-...+.|++-
T Consensus         4 Q~-P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq   36 (110)
T d1u3ha1           4 QS-PQSLTVWEGETAILNCSYENSAFDYFPWYQQ   36 (110)
T ss_dssp             CS-CSSEEEETTSCEEEEEEECCTTEEEEEEEEE
T ss_pred             ec-CCEEEEcCCCCEEEEEEecCCCCcEEEEEee
Confidence            44 4455678899999999998877788999973

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0065  Score=35.27  Aligned_cols=35  Identities=17%  Similarity=0.352  Sum_probs=26.9

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccC-CCeEEEEeC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSP-NPEIIWIRS   56 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P-~P~I~W~~~   56 (74)
                      +.+.|.+. ....|++|+|.|..++.- ...|.|++-
T Consensus         3 ~~~sP~~~-t~~~G~~vtL~C~~~~~~~~~~i~WyrQ   38 (114)
T d1akjd_           3 FRVSPLDR-TWNLGETVELKCQVLLSNPTSGCSWLFQ   38 (114)
T ss_dssp             EEEECCSC-CCCTTCCEEEEEEECCSSCCSCEEEEEE
T ss_pred             eeECCCcE-eccCCCcEEEEEEeCCCcCCCCEEEEEE
Confidence            56776554 578899999999988754 567999983

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.0034  Score=36.20  Aligned_cols=44  Identities=20%  Similarity=0.382  Sum_probs=27.8

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~   62 (74)
                      .+|....-||...+..+ ..+.|.|.|.| .|.. +|+|.+ ||..+.
T Consensus         4 ~~P~V~l~~Ps~~~~~~-~~~~L~Clv~~f~P~~i~v~W~~-ng~~~~   49 (107)
T d1c5cl2           4 AAPSVFIFPPSDEQLKS-GTASVVCLLNNFYPREAKVQWKV-DNALQS   49 (107)
T ss_dssp             BCCEEEEECCCHHHHHT-TEEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             cCCEEEEECCCHHHhcC-CceEEEEEEEEeeCCCCEEEEEE-CCEECC
Confidence            34543333455433443 35999999999 4654 799996 676543

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.05  E-value=0.013  Score=34.19  Aligned_cols=35  Identities=14%  Similarity=0.331  Sum_probs=26.6

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCC-----CeEEEEeC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPN-----PEIIWIRS   56 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~-----P~I~W~~~   56 (74)
                      .+|.| ..+..+.|++|+|+|.+++...     .-+.|++.
T Consensus         4 lTQsP-~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ   43 (112)
T d1ncwl1           4 MTQSP-KTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQ   43 (112)
T ss_dssp             EEEEC-SEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             EeCcC-CEEEECCCCCEEEEEEECcccccCCCCcccEEEEc
Confidence            46775 5566888999999999887653     45999974

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.03  E-value=0.0018  Score=37.34  Aligned_cols=44  Identities=18%  Similarity=0.467  Sum_probs=29.8

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~   62 (74)
                      .+|....-||...+... ..+.|.|.|.| .|.- +|+|.+ ||..+.
T Consensus         4 ~~P~V~v~~ps~~~~~~-~~~~l~C~~~gf~P~~i~v~W~~-~g~~~~   49 (104)
T d1nfde2           4 SSPKVTVFPPSPEELRT-NKATLVCLVNDFYPGSATVTWKA-NGATIN   49 (104)
T ss_dssp             BCCEEECCCCCHHHHHT-TEECCCEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             cCCEEEEECCCHHHHcC-CcEEEEEEEEEeeCCCCEEEEEE-CCEECC
Confidence            45655555565543333 35899999999 6654 899996 777665

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.03  E-value=0.015  Score=34.20  Aligned_cols=34  Identities=26%  Similarity=0.499  Sum_probs=26.6

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      .+++ +..+.+..|++++|+|..+|..  ...+.|++
T Consensus         4 vv~~-~~sv~v~~G~~vtL~C~~s~~~~~~~~~~Wyr   39 (120)
T d1hxma1           4 LVPE-HQTVPVSIGVPATLRCSMKGEAIGNYYINWYR   39 (120)
T ss_dssp             EEES-CSEEEEETTCCEEEEEEECSSCGGGSEEEEEE
T ss_pred             Eecc-CCCEEECCCCCEEEEEEEeccCccCCcCeEEE
Confidence            3455 4566678899999999999765  57799997

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.00  E-value=0.0075  Score=34.87  Aligned_cols=35  Identities=17%  Similarity=0.322  Sum_probs=28.1

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      .+|.|+ .+....|++|+|+|..+++....+.|++-
T Consensus         4 ltQsP~-s~~~~~G~~vtl~C~~s~~~~~~~~WYrq   38 (107)
T d3cx5k1           4 LTQTPV-SLAASLGDRVTISCRASQDINNFLNWYQQ   38 (107)
T ss_dssp             EEEEST-TCCBCSSSCCEEEEEESSCCTTCEEEEEE
T ss_pred             EECcCC-EEEECCCCCEEEEEEcCCCcCCCeEEEEc
Confidence            356654 45578899999999999998888999964

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=96.00  E-value=0.0051  Score=35.20  Aligned_cols=28  Identities=25%  Similarity=0.604  Sum_probs=22.3

Q ss_pred             CCCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558         34 TTGAQVECTARG-SPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        34 g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~   62 (74)
                      ++.++|.|.|.| .|.. +|+|++ ||..+.
T Consensus        16 ~~~vtL~C~a~gF~P~~i~v~W~~-~~~~~~   45 (96)
T d2h26a1          16 PGRLQLVCHVSGFYPKPVWVMWMR-GEQEQQ   45 (96)
T ss_dssp             TTEEEEEEEEEEEBSSCEEEEEEE-TTEECT
T ss_pred             CCeEEEEEEEEEEECCCcEEEEEE-CcccCC
Confidence            335999999999 7877 899996 677654

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=96.00  E-value=0.011  Score=33.87  Aligned_cols=43  Identities=16%  Similarity=0.278  Sum_probs=29.3

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEccc-C-CCeEEEEeCCCeeec
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGS-P-NPEIIWIRSDGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P-~P~I~W~~~dG~~i~   62 (74)
                      .+|....-|++..  ..+..++|.|.|.|- | .-.|+|++ ||.++.
T Consensus         4 ~~P~V~v~~~~~~--~~~~~~tL~C~~~gFyP~~i~v~W~~-ng~~~~   48 (99)
T d1uvqa1           4 EVPEVTVFSKSPV--TLGQPNTLICLVDNIFPPVVNITWLS-NGQSVT   48 (99)
T ss_dssp             CCCEEEEEESSCC--CTTSCEEEEEEEEEECSSCCEEEEEE-TTEEEC
T ss_pred             cCCEEEEEcCCcc--cCCCcEEEEEEEEEEECCCCEEEEEE-CCEecc
Confidence            4564444444443  245569999999997 4 56799996 788764

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.98  E-value=0.0056  Score=35.33  Aligned_cols=44  Identities=25%  Similarity=0.466  Sum_probs=28.0

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcc-cCC-CeEEEEeCCCeeec
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARG-SPN-PEIIWIRSDGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~-P~I~W~~~dG~~i~   62 (74)
                      .+|....-||..-+.. +..++|.|.|.| .|. =.|+|++ ||..+.
T Consensus         4 ~~P~V~l~~ps~~~~~-~~~~tL~Cl~~~f~P~~i~v~W~~-ng~~~~   49 (107)
T d1mjul2           4 AAPTVSIFPPSSEQLT-SGGASVVCFLNNFYPKDINVKWKI-DGSERQ   49 (107)
T ss_dssp             BCCEEEEECCCHHHHT-TTEEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             cCCEEEEECCCHHHhc-CCceEEEEEEEEeECCCCEEEEEE-CCEEcc
Confidence            3454333345443333 345999999999 454 3799986 787654

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=95.94  E-value=0.0061  Score=34.93  Aligned_cols=42  Identities=21%  Similarity=0.411  Sum_probs=23.8

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~   62 (74)
                      .|....-|+....  .+..++|.|.|.| .|.. +|+|.+ ||..+.
T Consensus         4 ~P~V~l~~~~~~~--~~~~~tL~C~v~~F~P~~i~v~W~~-~g~~~~   47 (98)
T d1d5mb1           4 YPEVTVYPAKTQP--LQHHNLLVCSVNGFYPGSIEVRWFR-NGQEEK   47 (98)
T ss_dssp             CCEEEEEEC----------CEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             CCEEEEECCCccc--cCCceEEEEEEeeeECCCcEEEEEE-CCEEcC
Confidence            4544444444432  3445789999999 4543 799986 787664

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=95.93  E-value=0.0033  Score=36.43  Aligned_cols=44  Identities=14%  Similarity=0.184  Sum_probs=28.1

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeee
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAV   61 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i   61 (74)
                      .+|.-..-||+..+...+..++|.|.|.| .|.. +|+|.+ ||..+
T Consensus         7 ~~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~-~g~~~   52 (107)
T d1hxmb2           7 VSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEE-KKSNT   52 (107)
T ss_dssp             CSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEE-SSSCC
T ss_pred             CCCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEE-CCeEc
Confidence            34543444444434455667999999999 5533 599996 66544

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.93  E-value=0.027  Score=32.54  Aligned_cols=33  Identities=18%  Similarity=0.301  Sum_probs=26.0

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEccc-CCCeEEEEe
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGS-PNPEIIWIR   55 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~-P~P~I~W~~   55 (74)
                      ++. |..+.+.+|+.|+|.|.+++. ....+.|++
T Consensus         3 tqs-P~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyr   36 (114)
T d3bp5a1           3 TFY-PAWLTVSEGANATFTCSLSNWSEDLMLNWNR   36 (114)
T ss_dssp             EEE-SSEEEEETTCCEEEEEEESCCCTTCEEEEEE
T ss_pred             eEC-CCeEEECCCCCEEEEEEECCCCCcceEEEEE
Confidence            455 466668899999999999765 467899997

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.91  E-value=0.015  Score=33.43  Aligned_cols=30  Identities=27%  Similarity=0.608  Sum_probs=24.0

Q ss_pred             CCCcEEecCCCCeEEEEEEccc-CCCeEEEEe
Q psy11558         25 PPNRIDFSNTTGAQVECTARGS-PNPEIIWIR   55 (74)
Q Consensus        25 Pp~~v~~~~g~~v~L~C~A~G~-P~P~I~W~~   55 (74)
                      || .+.+.+|++|+|.|..++. ....+.|++
T Consensus         5 P~-svsv~~G~~vtl~C~~s~~~~~~~l~WYr   35 (110)
T d2esvd1           5 PP-SMDCAEGRAANLPCNHSTISGNEYVYWYR   35 (110)
T ss_dssp             CS-EEEEETTSCEEEEEECTTCCTTEEEEEEE
T ss_pred             CC-EEEECCCCCEEEEEEEcCCCCCCeEEEEE
Confidence            54 5678889999999998764 467799997

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.91  E-value=0.0024  Score=38.01  Aligned_cols=44  Identities=30%  Similarity=0.509  Sum_probs=27.6

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~   62 (74)
                      +|....-+|+.-+...+..++|.|.|+| .|.. +|+|++ ||..+.
T Consensus         4 PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~-~g~~~~   49 (127)
T d1ogae2           4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVH   49 (127)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEEC
T ss_pred             CCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEE-CCEEcc
Confidence            4544433344323334456999999999 4532 599986 787764

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=95.86  E-value=0.011  Score=33.96  Aligned_cols=29  Identities=21%  Similarity=0.417  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEEccc--CCCeEEEEeCCCeeec
Q psy11558         33 NTTGAQVECTARGS--PNPEIIWIRSDGTAVG   62 (74)
Q Consensus        33 ~g~~v~L~C~A~G~--P~P~I~W~~~dG~~i~   62 (74)
                      .+..++|.|.|.|-  +.-.|+|.+ ||..+.
T Consensus        16 ~~~~~tL~C~~~gFyP~~i~v~W~~-ng~~~~   46 (98)
T d1hdmb1          16 TREPVMLACYVWGFYPAEVTITWRK-NGKLVM   46 (98)
T ss_dssp             SSCSEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             CCCcEEEEEEEEEEECCCCEEEEEE-CCEecc
Confidence            44569999999996  478899986 787664

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.83  E-value=0.013  Score=34.17  Aligned_cols=32  Identities=16%  Similarity=0.388  Sum_probs=25.5

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      .|. |..+....|++++|.|..++. ...+.|++
T Consensus         4 ~Q~-P~~~~~~~G~svtl~C~~s~~-~~~~~WYr   35 (115)
T d1ogad1           4 EQS-PQFLSIQEGENLTVYCNSSSV-FSSLQWYR   35 (115)
T ss_dssp             EEE-CSEEEEETTCCEEEEEECSSC-CSCEEEEE
T ss_pred             EeC-CCeEEECCCCCEEEEEEECCC-CceEEEEe
Confidence            455 455668889999999999885 56899997

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.79  E-value=0.014  Score=33.59  Aligned_cols=33  Identities=12%  Similarity=0.357  Sum_probs=24.6

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      +|.| ..+....|++++|+|+..+. ...+.|++-
T Consensus         3 tQ~P-~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ   35 (111)
T d2esve1           3 TQFP-SHSVIEKGQTVTLRCDPISG-HDNLYWYRR   35 (111)
T ss_dssp             EEEC-SEEEEETTCCEEEEEECCTT-CSEEEEEEE
T ss_pred             EECC-CEEEECCCCCEEEEEEECCC-CceEEEEEE
Confidence            3554 44457788899999997764 679999973

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.79  E-value=0.0076  Score=34.73  Aligned_cols=32  Identities=16%  Similarity=0.349  Sum_probs=25.0

Q ss_pred             cCCCcEEecCCCCeEEEEEEcccCC--CeEEEEeC
Q psy11558         24 EPPNRIDFSNTTGAQVECTARGSPN--PEIIWIRS   56 (74)
Q Consensus        24 ~Pp~~v~~~~g~~v~L~C~A~G~P~--P~I~W~~~   56 (74)
                      +|+ .+....|++++|.|.++|.-.  --+.|++-
T Consensus         6 QP~-s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ   39 (111)
T d1cd0a_           6 QPH-SVSESPGKTVTISCTRSSGNIDSNYVQWYQQ   39 (111)
T ss_dssp             CCS-EEEECTTSCEEEEEEESSSCGGGSCCEEEEE
T ss_pred             cCC-eeEECCCCCEEEEEEECCCCccCceEEEeee
Confidence            454 678899999999999988643  34999973

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=95.76  E-value=0.015  Score=33.02  Aligned_cols=40  Identities=15%  Similarity=0.554  Sum_probs=26.6

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcc-cCC-CeEEEEeCCCeee
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARG-SPN-PEIIWIRSDGTAV   61 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~-P~I~W~~~dG~~i   61 (74)
                      -+++..|+.. +.. +..++|.|.|.| .|. -+|+|.+ ||...
T Consensus         6 ~V~l~~ps~~-~~~-~~~~tl~C~v~gf~P~~i~v~W~~-~g~~~   47 (102)
T d1igtb4           6 QVYVLPPPEE-EMT-KKQVTLTCMVTDFMPEDIYVEWTN-NGKTE   47 (102)
T ss_dssp             EEEEECCCGG-GTT-SSEEEEEEEEEEEBSSCCEEEEEE-TTEEC
T ss_pred             EEEEECCCHH-Hhc-CCcEEEEEEEEEeECCCcEEEEEE-CCEEc
Confidence            3555555433 233 446999999999 573 5799986 67653

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.76  E-value=0.025  Score=32.53  Aligned_cols=32  Identities=16%  Similarity=0.476  Sum_probs=25.1

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      .|. |..+....|++++|.|...+. ...+.|++
T Consensus         5 ~Q~-P~~~~v~~G~~vtl~C~~~~~-~~~~~WYr   36 (113)
T d1h5ba_           5 EQS-PSALSLHEGTDSALRCNFTTT-MRSVQWFR   36 (113)
T ss_dssp             EEE-CSEEEEETTCCEEEEEEESSC-CSEEEEEE
T ss_pred             EEC-CCEEEEcCCCCEEEEEEEecC-CccceEEE
Confidence            445 455567889999999999874 56899987

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.009  Score=34.39  Aligned_cols=40  Identities=10%  Similarity=0.364  Sum_probs=26.6

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcc-cC-CCeEEEEeCCCeeec
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARG-SP-NPEIIWIRSDGTAVG   62 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P-~P~I~W~~~dG~~i~   62 (74)
                      +++..|+.. .. .+..++|.|.|.| .| .-+|+|.+ ||..+.
T Consensus         7 V~v~~p~~~-~~-~~~~vtL~Clv~~f~P~~i~v~W~~-~g~~~~   48 (105)
T d1fp5a2           7 VYAFATPEW-PG-SRDKRTLACLIQNFMPEDISVQWLH-NEVQLP   48 (105)
T ss_dssp             EEEEECCCC-SS-SSCCEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             EEEECCChH-Hh-cCCcEEEEEEEEeeeCCCcEEEEEE-CCEECC
Confidence            445544433 22 3445999999999 66 46899986 777654

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.69  E-value=0.026  Score=32.25  Aligned_cols=32  Identities=13%  Similarity=0.369  Sum_probs=24.9

Q ss_pred             cCCCcEEecCCCCeEEEEEEcc-cCCCeEEEEe
Q psy11558         24 EPPNRIDFSNTTGAQVECTARG-SPNPEIIWIR   55 (74)
Q Consensus        24 ~Pp~~v~~~~g~~v~L~C~A~G-~P~P~I~W~~   55 (74)
                      ++|..+...+|++|+|+|...+ .....+.|++
T Consensus         4 Q~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYr   36 (115)
T d1fo0a_           4 QTQTSISVMEKTTVTMDCVYETQDSSYFLFWYK   36 (115)
T ss_dssp             CCCCEEEEETTCCEEECCEECCCCSSCEEEEEE
T ss_pred             ccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEE
Confidence            3456667888999999998754 4567899987

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.69  E-value=0.01  Score=33.86  Aligned_cols=40  Identities=15%  Similarity=0.440  Sum_probs=26.5

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcc-cC-CCeEEEEeCCCeeec
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARG-SP-NPEIIWIRSDGTAVG   62 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P-~P~I~W~~~dG~~i~   62 (74)
                      +++..|+.. +.. ...++|.|.|.| .| .=+|+|.+ ||.++.
T Consensus         6 V~i~~ps~~-~~~-~~~~tL~C~v~~f~P~~i~v~W~~-~g~~~~   47 (101)
T d1cqka_           6 VYTIPPPLE-QMA-KDLVSLTCMITDFFPEDITVEWQW-NGQPAE   47 (101)
T ss_dssp             EEEECCCGG-GTT-SSEEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             EEEECCCHH-HHC-CCcEEEEEEEEEeECCCcEEEEEE-CCEEcc
Confidence            455554433 233 335999999999 57 45699996 777653

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=95.64  E-value=0.024  Score=32.69  Aligned_cols=34  Identities=21%  Similarity=0.320  Sum_probs=24.5

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccC----CCeEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSP----NPEIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P----~P~I~W~~~   56 (74)
                      +|.| ..+.+..|++|+|.|.++.+-    ...+.|++.
T Consensus         5 tQsP-~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq   42 (111)
T d1j05a_           5 TQSP-ASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQ   42 (111)
T ss_dssp             EEEC-SEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEE
T ss_pred             EccC-CEEEECCCCCEEEEEEeccCCccCCceeEEEEEc
Confidence            4664 566678899999999886432    344999974

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0032  Score=35.57  Aligned_cols=35  Identities=29%  Similarity=0.485  Sum_probs=26.4

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCC----eEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNP----EIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P----~I~W~~~   56 (74)
                      +..|.+.+....|+++.|.|..++.+.+    .|.|.+.
T Consensus         7 Vt~p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~   45 (124)
T d1eaja_           7 ITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLIS   45 (124)
T ss_dssp             ESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEE
T ss_pred             EEccCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEe
Confidence            4455566777899999999999876543    5999864

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=95.59  E-value=0.011  Score=34.74  Aligned_cols=32  Identities=19%  Similarity=0.534  Sum_probs=25.4

Q ss_pred             cCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeC
Q psy11558         24 EPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRS   56 (74)
Q Consensus        24 ~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~   56 (74)
                      +|| .+.+..|++|+|.|.++|.-  ...+.|++-
T Consensus         6 Q~p-s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ   39 (114)
T d2rhea_           6 QPP-SASGTPGQRVTISCTGSATDIGSNSVIWYQQ   39 (114)
T ss_dssp             CCS-EEEECTTCCEEEEEECCTTTTTTSCEEEEEC
T ss_pred             cCC-cEEeCCCCCEEEEEEECCccccCCcccceee
Confidence            345 46788899999999998764  678999974

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.52  E-value=0.032  Score=32.00  Aligned_cols=30  Identities=13%  Similarity=0.371  Sum_probs=24.1

Q ss_pred             CCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         26 PNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      |..+...+|++|+|.|.++ .....+.|++-
T Consensus         6 P~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ   35 (114)
T d1ogae1           6 PKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQ   35 (114)
T ss_dssp             CSEEEEETTCCEEECCEEC-SCCSEEEEEEE
T ss_pred             CCeEEEcCCCCEEEEEEEe-cCCCcEEEEee
Confidence            5555678899999999987 45779999973

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.39  E-value=0.022  Score=33.18  Aligned_cols=35  Identities=9%  Similarity=0.285  Sum_probs=25.4

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcccCCCe---EEEEeC
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARGSPNPE---IIWIRS   56 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~---I~W~~~   56 (74)
                      +.++ || .+.++.|++++|+|..++...-.   +.|++-
T Consensus         3 ~~tQ-~~-slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ   40 (110)
T d1oaql_           3 VVTQ-ES-ALTTSPGETVTLTCRSSTGAVTTSNYANWVQE   40 (110)
T ss_dssp             CEEE-CS-EEEECTTCEEEEEEEETTBCCCGGGCCEEEEE
T ss_pred             CEee-CC-CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEe
Confidence            4445 55 46788999999999998654332   889863

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=95.39  E-value=0.043  Score=31.69  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=25.2

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccC----CCeEEEEeC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSP----NPEIIWIRS   56 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P----~P~I~W~~~   56 (74)
                      .+|.| ..+....|++|+|.|.+++.-    .-.+.|++-
T Consensus         4 ltQsP-~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ   42 (111)
T d2gsia1           4 LTQSP-ASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQ   42 (111)
T ss_dssp             EEEEC-SEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEE
T ss_pred             eEeeC-CEEEECCCCCEEEEEEECCCCccCCccceEEEEE
Confidence            45665 556678899999999987532    234999874

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.00046  Score=39.85  Aligned_cols=39  Identities=23%  Similarity=0.438  Sum_probs=24.9

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEccc--CC-CeEEEEeCCCe
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARGS--PN-PEIIWIRSDGT   59 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G~--P~-P~I~W~~~dG~   59 (74)
                      +.+..| ..-++..+..++|.|.|.|-  |. -+|+|.++++.
T Consensus         5 V~l~~P-s~~~~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~   46 (101)
T d1ow0a1           5 LSLHRP-ALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGK   46 (101)
T ss_dssp             CEEECC-CHHHHHHCSSCCCEEEETTCCSCCCCCCCBSSCSSC
T ss_pred             EEEECC-CHHHHccCCCeEEEEEEeCCCCCcceEEEEEECCce
Confidence            344443 33233345679999999994  53 37999875553

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=95.34  E-value=0.014  Score=34.03  Aligned_cols=34  Identities=15%  Similarity=0.359  Sum_probs=26.2

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEccc--CCCeEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGS--PNPEIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~--P~P~I~W~~~   56 (74)
                      .|. |..+....|.+++|.|..+|.  ....+.|++.
T Consensus         3 ~Q~-P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq   38 (112)
T d1sq2n_           3 DQT-PRSVTKETGESLTINCVLRDASYALGSTCWYRK   38 (112)
T ss_dssp             EEE-CSEEEECTTCCEEEEEEECSCSSCCCCEEEEEE
T ss_pred             Eec-CCEEEEcCCCCEEEEEEECCCcccCCceEEEEe
Confidence            344 556677889899999998764  4688999974

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.33  E-value=0.015  Score=33.71  Aligned_cols=31  Identities=13%  Similarity=0.429  Sum_probs=25.6

Q ss_pred             cCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         24 EPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        24 ~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      +|+ .+.+..|++|+|+|.+...-...+.|++
T Consensus         5 QP~-s~~~~~G~svtl~C~~~~~~~~~i~WYr   35 (108)
T d1nfde1           5 QPS-SASVTVGETVKITCSGDQLPKNFAYWFQ   35 (108)
T ss_dssp             CCS-EEEEETTSCCCEEEEETTGGGSCCEEEE
T ss_pred             CCC-eeEECCCCCEEEEEECCCCCCccEEEEe
Confidence            354 5778889999999999877777899997

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.29  E-value=0.044  Score=31.21  Aligned_cols=32  Identities=9%  Similarity=0.375  Sum_probs=24.7

Q ss_pred             cCCCcEEecCCCCeEEEEEEc-ccCCCeEEEEe
Q psy11558         24 EPPNRIDFSNTTGAQVECTAR-GSPNPEIIWIR   55 (74)
Q Consensus        24 ~Pp~~v~~~~g~~v~L~C~A~-G~P~P~I~W~~   55 (74)
                      ++|..+.+.+|++|+|+|... +.....+.|++
T Consensus         5 Q~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyr   37 (114)
T d2ak4d1           5 QAQTEISVVEKEDVTLDCVYETRDTTYYLFWYK   37 (114)
T ss_dssp             CCCCEEEEETTCCEEECCEEECSCSSCEEEEEE
T ss_pred             ecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEE
Confidence            345666788899999999865 44567899987

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=95.27  E-value=0.012  Score=34.60  Aligned_cols=46  Identities=20%  Similarity=0.322  Sum_probs=28.2

Q ss_pred             CccceEEEcCCC-cEEecCCCCeEEEEEEccc-CC---CeEEEEeCCCeeec
Q psy11558         16 TLGPIFIKEPPN-RIDFSNTTGAQVECTARGS-PN---PEIIWIRSDGTAVG   62 (74)
Q Consensus        16 ~~~P~fv~~Pp~-~v~~~~g~~v~L~C~A~G~-P~---P~I~W~~~dG~~i~   62 (74)
                      ..+|....-||. .-.+..+..++|.|.|.|- |.   =+|+|.+ ||..+.
T Consensus        13 ~~~PsV~i~pPs~~e~~~~~~~~~L~C~v~gf~P~~~~v~v~W~~-~g~~~~   63 (119)
T d1igtb3          13 LGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFV-NNVEVH   63 (119)
T ss_dssp             CCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEE-TTEECS
T ss_pred             CcCCEEEEECCChHHhcccCCceEEEEEeecccCCCCcEEEEEee-CCcccC
Confidence            345544444343 2223345679999999994 54   3688986 676654

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.23  E-value=0.016  Score=32.92  Aligned_cols=42  Identities=21%  Similarity=0.631  Sum_probs=27.2

Q ss_pred             cc-eEEEcCCCcEEecCCCCeEEEEEEcccCCC--eEEEEeCCCeeec
Q psy11558         18 GP-IFIKEPPNRIDFSNTTGAQVECTARGSPNP--EIIWIRSDGTAVG   62 (74)
Q Consensus        18 ~P-~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P--~I~W~~~dG~~i~   62 (74)
                      +| +++..|+.. +..++ .++|.|.|.|-=+.  +|+|++ ||.++.
T Consensus         4 ~P~V~i~~p~~~-~~~~~-~~~L~C~v~~f~P~~i~v~W~~-~g~~~~   48 (102)
T d1i1ca2           4 GPQVYTMAPPKE-EMTQS-QVSITCMVKGFYPPDIYTEWKM-NGQPQE   48 (102)
T ss_dssp             CCEEEEECCCGG-GGGSS-EEEEEEEEEEEBSSCCEEEEEE-TTEECS
T ss_pred             CCEEEEECCCHH-HhcCC-eEEEEEEEEEEECCCCEEEEEE-CCeecc
Confidence            44 455555433 33444 59999999997444  699996 676643

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.18  E-value=0.039  Score=30.66  Aligned_cols=22  Identities=23%  Similarity=0.475  Sum_probs=19.9

Q ss_pred             CCCeEEEEEEcccCCCeEEEEe
Q psy11558         34 TTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      |+.|+|+|...+.....+.|++
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyr   22 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYR   22 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEE
T ss_pred             CccEEEEEEEccccCCcEEEEE
Confidence            5679999999999999999987

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.16  E-value=0.033  Score=31.82  Aligned_cols=32  Identities=9%  Similarity=0.323  Sum_probs=24.6

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      +|. |..+....|++++|.|..++ -...+.|++
T Consensus         3 tQ~-P~~~~~~~G~svtl~C~~~~-~~~~~~WYr   34 (113)
T d2ntsp1           3 TQT-PRYLIKTRGQQVTLSCSPIS-GHRSVSWYQ   34 (113)
T ss_dssp             EEE-CSEEEEETTCCEEEEEECST-TCCEEEEEE
T ss_pred             EeC-CCeEEECCCCCEEEEEEECC-CCCEEEEEE
Confidence            355 45555778889999999876 467999997

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=95.14  E-value=0.017  Score=33.47  Aligned_cols=33  Identities=15%  Similarity=0.323  Sum_probs=25.7

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEccc--CCCeEEEEe
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGS--PNPEIIWIR   55 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~--P~P~I~W~~   55 (74)
                      .|. |..+...+|++++|+|..+|.  +...+.|++
T Consensus         4 ~Q~-P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyr   38 (113)
T d1vesa_           4 DQT-PRTATKETGESLTINCVLRDASFELKDTGWYR   38 (113)
T ss_dssp             EEE-CSEEEECTTCCEEEEEEEESCSSCCCEEEEEE
T ss_pred             Eee-CCEEEEcCCCCEEEEEEECCCcccCCccceee
Confidence            445 566677889999999999864  456799996

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.014  Score=33.29  Aligned_cols=44  Identities=30%  Similarity=0.481  Sum_probs=28.3

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEccc-CC-CeEEEEeCCCeeec
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGS-PN-PEIIWIRSDGTAVG   62 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P~-P~I~W~~~dG~~i~   62 (74)
                      .+|....-||...+... ..++|.|.|.|- |. =+|+|.+ ||..+.
T Consensus         4 ~~P~V~l~~ps~~~~~~-~~~tl~C~v~~f~P~~i~v~W~~-~g~~~~   49 (102)
T d1q0xl2           4 SSPTVTLFPPSSEELST-AKATLVCTITDFYPGVVTVDWKV-DGTPVT   49 (102)
T ss_dssp             BCCEEEEECCCHHHHTT-TEEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             CCCEEEEECCCHHHhCC-CeEEEEEEEeeeeCCCCEEEEEE-CCEECC
Confidence            35544444555433333 358999999997 32 3699996 787654

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=95.10  E-value=0.027  Score=32.35  Aligned_cols=31  Identities=19%  Similarity=0.590  Sum_probs=24.5

Q ss_pred             CCCcEEecCCCCeEEEEEEcccC--CCeEEEEeC
Q psy11558         25 PPNRIDFSNTTGAQVECTARGSP--NPEIIWIRS   56 (74)
Q Consensus        25 Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~   56 (74)
                      |+ .+.+..|++++|+|.+++.-  ...+.|++-
T Consensus         7 p~-s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq   39 (111)
T d1rzfl1           7 PP-SVSAAPGQKVTISCSGSSSNIGNNDVSWYQQ   39 (111)
T ss_dssp             CS-EEEECTTSCEEEEEECCCCCCCTSCEEEEEE
T ss_pred             Cc-ceEeCCCCCEEEEEEECCcCCcCCcccceee
Confidence            55 57788899999999988754  456999974

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.016  Score=32.92  Aligned_cols=30  Identities=20%  Similarity=0.359  Sum_probs=21.4

Q ss_pred             cCCCCeEEEEEEccc-CC---CeEEEEeCCCeeec
Q psy11558         32 SNTTGAQVECTARGS-PN---PEIIWIRSDGTAVG   62 (74)
Q Consensus        32 ~~g~~v~L~C~A~G~-P~---P~I~W~~~dG~~i~   62 (74)
                      ..+..++|.|.|.|- |.   =+++|.+ ||..+.
T Consensus        16 ~~~~~~~L~C~~~gf~P~~~~v~~~W~~-~~~~~~   49 (105)
T d1l6xa1          16 MISRTPEVTCVVVDVSHEDPEVKFNWYV-DGVEVH   49 (105)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEE-TTEEEC
T ss_pred             ccCCceEEEEEEEEEeCCCCeEEEEEee-CCeECC
Confidence            345579999999994 54   3677886 676654

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.012  Score=32.73  Aligned_cols=31  Identities=16%  Similarity=0.268  Sum_probs=25.6

Q ss_pred             EEecCCCCeEEEEEEcccCCCeEEEEeCCCe
Q psy11558         29 IDFSNTTGAQVECTARGSPNPEIIWIRSDGT   59 (74)
Q Consensus        29 v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~   59 (74)
                      |....|++|+|+|..+......+.|++.+..
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~   34 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQI   34 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCC
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCc
Confidence            4456788999999999999999999986543

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.06  E-value=0.034  Score=32.02  Aligned_cols=34  Identities=12%  Similarity=0.416  Sum_probs=25.3

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      .+|.|+. +...+|+.++|+|...+. ...+.|++-
T Consensus         4 VtQ~P~~-~~~~~G~~v~l~C~~~~~-~~~~~WYrQ   37 (113)
T d1nfdb1           4 VVQSPRH-IIKEKGGRSVLTCIPISG-HSNVVWYQQ   37 (113)
T ss_dssp             CEEECSE-EEEETTCCCEEEEECCTT-CCEEEEEEB
T ss_pred             EEEcCCE-EEEeCCCCEEEEEEeCCC-CCEEEEEEE
Confidence            3566544 456788899999998654 578999974

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.05  E-value=0.017  Score=32.29  Aligned_cols=28  Identities=18%  Similarity=0.330  Sum_probs=20.9

Q ss_pred             CCCeEEEEEEcccCCC--eEEEEeCCCeeec
Q psy11558         34 TTGAQVECTARGSPNP--EIIWIRSDGTAVG   62 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P--~I~W~~~dG~~i~   62 (74)
                      +..+.|.|.|.|--+.  .|+|.+ ||..+.
T Consensus        15 ~~~~~L~C~a~gFyP~~i~v~W~~-~g~~~~   44 (89)
T d2mhaa1          15 EDKVTLRCWALGFYPADITLTWQL-NGEELI   44 (89)
T ss_dssp             SSEEEEEEEEESCBSSCCEEEEEE-TTEEEC
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEE-CCEEeC
Confidence            3469999999995433  579996 787664

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=95.04  E-value=0.047  Score=31.60  Aligned_cols=35  Identities=17%  Similarity=0.319  Sum_probs=26.0

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcccC-----CCeEEEEeC
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARGSP-----NPEIIWIRS   56 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G~P-----~P~I~W~~~   56 (74)
                      .+|. |..+....|++|+|+|..++.-     ...+.|++-
T Consensus         5 ltQ~-P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ   44 (113)
T d1n4xl_           5 MTQT-PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQ   44 (113)
T ss_dssp             EEEE-CSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEE
T ss_pred             EeCc-CCEEEECCCCCEEEEEEeccccccCCCceEeEEEec
Confidence            3455 4566678899999999987643     367999974

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.04  E-value=0.014  Score=34.53  Aligned_cols=33  Identities=15%  Similarity=0.361  Sum_probs=26.6

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      |. |..+....|++++|.|.++++=...+.|++-
T Consensus         6 Q~-P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ   38 (119)
T d1f3rb2           6 QS-PSLLSASVGDRVTLSCKGSQNINNYLAWYQQ   38 (119)
T ss_dssp             EE-TSEECCCTTCCEEEEEECSSCCBTCEEEEEE
T ss_pred             cc-CCEEEECCCCCEEEEEEeCCCCcceeEEeee
Confidence            45 4566678899999999999877778999973

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=95.03  E-value=0.018  Score=32.46  Aligned_cols=27  Identities=30%  Similarity=0.641  Sum_probs=21.2

Q ss_pred             CCeEEEEEEcc-cCCC-eEEEEeCCCeeec
Q psy11558         35 TGAQVECTARG-SPNP-EIIWIRSDGTAVG   62 (74)
Q Consensus        35 ~~v~L~C~A~G-~P~P-~I~W~~~dG~~i~   62 (74)
                      +.++|-|.|+| .|.. +|+|.+ ||..+.
T Consensus        16 ~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~   44 (94)
T d1hyrc1          16 GNITVTCRASGFYPWNITLSWRQ-DGVSLS   44 (94)
T ss_dssp             SEEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred             CCEEEEEEEEEEECCCcEEEEeE-CCeEcC
Confidence            35999999999 4754 799996 777664

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.91  E-value=0.034  Score=31.75  Aligned_cols=32  Identities=13%  Similarity=0.408  Sum_probs=24.3

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      .|.| ..+...+|++++|+|.++.. ...+.|++
T Consensus         2 ~QsP-~~~~~~~G~svtL~C~~~~~-~~~~~WYr   33 (112)
T d2cdeb1           2 YQTP-RYLVIGTGKKITLECSQTMG-HDKMYWYQ   33 (112)
T ss_dssp             EEEC-SEEEEETTCCBCCEEEETTC-CSEEEEEE
T ss_pred             EECC-CEEEECCCCCEEEEEEEeCC-cccEEEEE
Confidence            3554 44457788899999998753 57899997

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=94.91  E-value=0.035  Score=32.06  Aligned_cols=34  Identities=15%  Similarity=0.375  Sum_probs=24.6

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccC------CCeEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSP------NPEIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P------~P~I~W~~~   56 (74)
                      +|. |..+....|++++|+|.+++.-      ...+.|++.
T Consensus         5 tQ~-P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq   44 (113)
T d1q9ra1           5 SQS-PSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQ   44 (113)
T ss_dssp             EEE-CSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEE
T ss_pred             Ecc-CCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEec
Confidence            455 4556678898999999988632      245999974

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.87  E-value=0.053  Score=30.70  Aligned_cols=33  Identities=15%  Similarity=0.350  Sum_probs=25.5

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      +|. |..+....|++|+|+|..++ ....+.|++-
T Consensus         4 tQs-P~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ   36 (104)
T d1yqvl1           4 TQS-PAIMSASPGEKVTMTCSASS-SVNYMYWYQQ   36 (104)
T ss_dssp             EEE-SSEEEECTTCCEEEEEEESS-CCSCCEEEEE
T ss_pred             eCc-CCeEEECCCCCEEEEEEeCC-CCCccEEEEe
Confidence            455 56667888999999999875 4567899974

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=94.85  E-value=0.018  Score=33.51  Aligned_cols=32  Identities=16%  Similarity=0.520  Sum_probs=26.1

Q ss_pred             cCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         24 EPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        24 ~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      +|| .+...+|++|+|+|.++..-...+.|++-
T Consensus         6 Qp~-sl~~~~G~svtl~C~~~~~~~~~i~WYrQ   37 (109)
T d1w72l1           6 QPP-SVSVAPGQTARITCGGNNIGSRSVHWYQQ   37 (109)
T ss_dssp             CCS-EEEECTTSCEEEEEECTTGGGSCCEEEEE
T ss_pred             eCC-eEEECCCCCEEEEEEcCCCCCcceeeeec
Confidence            345 56788899999999998877788999974

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.83  E-value=0.047  Score=31.13  Aligned_cols=32  Identities=9%  Similarity=0.281  Sum_probs=24.0

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      +|.| ..+....|++++|.|...+ ....|.|++
T Consensus         3 tQ~P-~~~~~~~G~svtl~C~~~~-~~~~i~WYr   34 (112)
T d1kgce1           3 SQSP-RYKVAKRGQDVALRCDPIS-GHVSLFWYQ   34 (112)
T ss_dssp             EEEC-SEEEEETTCCEEEEEECCT-TCCEEEEEE
T ss_pred             EECC-CeEEECCCCCEEEEEEECC-CCCEEEeee
Confidence            3554 4445678889999999764 578999997

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.82  E-value=0.045  Score=31.28  Aligned_cols=32  Identities=13%  Similarity=0.333  Sum_probs=24.3

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      +|. |..+....|++++|.|..+.. ...+.|++
T Consensus         3 tQ~-P~~~~~~~G~svtl~C~~s~~-~~~~~WYr   34 (112)
T d2bnub1           3 TQT-PKFQVLKTGQSMTLQCAQDMN-HEYMSWYR   34 (112)
T ss_dssp             EEE-CSEEEEETTCCEEEEEEESSC-CSEEEEEE
T ss_pred             EEC-CCeEEECCCCCEEEEEEEECC-ccceEecc
Confidence            345 444456788899999998764 67899997

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.032  Score=31.80  Aligned_cols=34  Identities=12%  Similarity=0.238  Sum_probs=26.0

Q ss_pred             EcCCCcEEecCCCCeEEEEEEccc--CCCeEEEEeC
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGS--PNPEIIWIRS   56 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~--P~P~I~W~~~   56 (74)
                      +.|.+.+.+.+|++++|.|..++.  ....+.|.+-
T Consensus         3 ~~pe~~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq   38 (113)
T d1smoa_           3 KLTEEKYELKEGQTLDVKCDYTLEKFASSQKAWQII   38 (113)
T ss_dssp             EESEEEEECCTTCCEEEEEECCHHHHTTSCEEEEEE
T ss_pred             eeccCcEEEccCCCEEEEEEeCCCCCCCCEEEEEEC
Confidence            445666777889999999998764  4567999973

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.01  Score=33.84  Aligned_cols=39  Identities=18%  Similarity=0.571  Sum_probs=24.3

Q ss_pred             EEEcCCCcEEecCCCCeEEEEEEcc-cCC---CeEEEEeCCCee
Q psy11558         21 FIKEPPNRIDFSNTTGAQVECTARG-SPN---PEIIWIRSDGTA   60 (74)
Q Consensus        21 fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~---P~I~W~~~dG~~   60 (74)
                      ++.-| +.-++..+..++|.|.|.| .|.   =++.|.++++..
T Consensus         4 ~l~pP-s~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~   46 (103)
T d1fp5a1           4 YLSRP-SPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKP   46 (103)
T ss_dssp             EEECC-CHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCC
T ss_pred             EEeCc-CHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCcee
Confidence            44443 3322334556999999999 464   267788766654

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.44  E-value=0.034  Score=31.57  Aligned_cols=40  Identities=15%  Similarity=0.402  Sum_probs=25.5

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcc-cCCC--eEEEEeCCCeee
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARG-SPNP--EIIWIRSDGTAV   61 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P--~I~W~~~dG~~i   61 (74)
                      +-+|...|+...   .+..++|-|.|+| .|.-  .++|. .||..+
T Consensus         6 PsV~pl~~~~~~---~~~~v~L~Clv~gF~P~~~i~v~W~-~~~~~~   48 (102)
T d2fbjh2           6 PTIYPLTLPPAL---SSDPVIIGCLIHDYFPSGTMNVTWG-KSGKDI   48 (102)
T ss_dssp             CEEEEECCCSSS---CCSSEEEEEEEEEEBSCCCEEEEES-CCCSSC
T ss_pred             CEEeeeCCCccc---CCCcEEEEEEEEcccCCCcEEEEEc-cCCCcC
Confidence            335655554432   2456999999999 5753  46776 467544

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.32  E-value=0.094  Score=31.38  Aligned_cols=25  Identities=28%  Similarity=0.501  Sum_probs=19.5

Q ss_pred             ecCCCCeEEEEEEcccC----CCeEEEEe
Q psy11558         31 FSNTTGAQVECTARGSP----NPEIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P----~P~I~W~~   55 (74)
                      +..|++++|.|+++|..    ...+.|++
T Consensus        12 v~PG~sv~LsC~~SG~s~ss~~~~~~WyR   40 (120)
T d2agjh1          12 VKPTQTLTLTCTFSGFSLTTTGEGVGWIR   40 (120)
T ss_dssp             CCSSSEEEEEEEEESCCTTSSSCEEEEEE
T ss_pred             ECCCCCEEEEEEEcccCccCCCCeEeecc
Confidence            34577899999999853    35799997

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.13  E-value=0.096  Score=29.77  Aligned_cols=32  Identities=13%  Similarity=0.289  Sum_probs=23.9

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      +|.| ..+...+|++|+|+|.... -...+.|++
T Consensus         4 ~QsP-~~~~~~~G~~v~l~C~~~~-~~~~~~WYr   35 (113)
T d1j8he1           4 TQSS-RYLVKRTGEKVFLECVQDM-DHENMFWYR   35 (113)
T ss_dssp             EESC-SEEEEETTCCEEECEEESS-CCSEEEEEE
T ss_pred             EccC-CEEEECCCCCEEEEEEEcC-CccEEEeEE
Confidence            4554 4445778889999998753 367899997

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=94.01  E-value=0.042  Score=31.46  Aligned_cols=29  Identities=21%  Similarity=0.289  Sum_probs=23.6

Q ss_pred             CcEEecCCCCeEEEEEEcccC---CCeEEEEe
Q psy11558         27 NRIDFSNTTGAQVECTARGSP---NPEIIWIR   55 (74)
Q Consensus        27 ~~v~~~~g~~v~L~C~A~G~P---~P~I~W~~   55 (74)
                      ..+....|++|+|+|..++.-   ...+.|++
T Consensus         8 ~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYr   39 (112)
T d1lgva1           8 ASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQ   39 (112)
T ss_dssp             SEEEECTTCCEEEEEECCCCSSSCCCCEEEEE
T ss_pred             CcEEECCCCCEEEEEEeCCCCCCCCCcceeee
Confidence            567788899999999998753   45699997

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.82  E-value=0.11  Score=29.56  Aligned_cols=42  Identities=21%  Similarity=0.374  Sum_probs=24.6

Q ss_pred             ccc-eEEEcCCCcEEecCCCCeEEEEEEcc-cCC-CeEEEEeCCCee
Q psy11558         17 LGP-IFIKEPPNRIDFSNTTGAQVECTARG-SPN-PEIIWIRSDGTA   60 (74)
Q Consensus        17 ~~P-~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~-P~I~W~~~dG~~   60 (74)
                      .+| +|...|... .......+.|-|.|.| .|. =+|+|.+ ||..
T Consensus         4 ~~P~V~~l~p~~~-~~~~~~~~~l~Cl~~gF~P~~i~v~W~~-~~~~   48 (105)
T d1dn0b2           4 SAPTLFPLVSCEN-SPSDTSSVAVGCLAQDFLPDSITFSWKY-KNNS   48 (105)
T ss_dssp             BCCEEEEEECC-------CCSEEEEEEEEEEBSSCCEEEEEE-TTSC
T ss_pred             cCCeEEeECCCcc-ccCCCCceEEEEEEecccCCcEEEEEEE-CCcc
Confidence            445 455554333 2334456999999999 663 5699987 4543

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.78  E-value=0.042  Score=30.76  Aligned_cols=34  Identities=9%  Similarity=0.178  Sum_probs=24.0

Q ss_pred             EEcCCCcEEecCCCCeEEEEEEcc----cCCCeEEEEeC
Q psy11558         22 IKEPPNRIDFSNTTGAQVECTARG----SPNPEIIWIRS   56 (74)
Q Consensus        22 v~~Pp~~v~~~~g~~v~L~C~A~G----~P~P~I~W~~~   56 (74)
                      ++. |..+....|++++|.|....    .....|.|.+.
T Consensus         3 v~~-p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~   40 (119)
T d1neua_           3 VYT-DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQ   40 (119)
T ss_dssp             EEC-CSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEE
T ss_pred             EcC-CCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEe
Confidence            344 55667778999999998542    23458999863

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=93.59  E-value=0.048  Score=30.84  Aligned_cols=41  Identities=12%  Similarity=0.244  Sum_probs=23.0

Q ss_pred             ceEEEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeCCCeeec
Q psy11558         19 PIFIKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRSDGTAVG   62 (74)
Q Consensus        19 P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~dG~~i~   62 (74)
                      |.....|+....  .+..++|.|.|.|-=  .=+|+|.+ ||.++.
T Consensus         3 P~V~v~p~~~~~--~~~~~tL~C~~~gF~P~~i~v~W~~-ng~~~~   45 (97)
T d1uvqb1           3 PTVTISPSRTEA--LNHHNLLVCSVTDFYPGQIKVRWFR-NDQEET   45 (97)
T ss_dssp             CEEEEEEC----------CEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred             CEEEEecCCccc--CCCCEEEEEEEeeeECCCeEEEEEE-CCEEcC
Confidence            444444444432  244589999999963  35699986 776654

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.58  E-value=0.21  Score=28.44  Aligned_cols=33  Identities=15%  Similarity=0.188  Sum_probs=23.0

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccCCC---eEEEEeC
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSPNP---EIIWIRS   56 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P~P---~I~W~~~   56 (74)
                      .+| ..+....|+.|+|.|+....-.+   .|.|++-
T Consensus         4 tQP-~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ   39 (118)
T d1i8lc_           4 AQP-AVVLASSRGIASFVCEYASPGKATEVRVTVLRQ   39 (118)
T ss_dssp             ECC-SEEECCSSSCEEEEEEECCCSCCSEEEEEEEEE
T ss_pred             eCC-CEEEEeCCCcEEEEEEccccccccceeEEEEEE
Confidence            444 45556778889999998644334   4999973

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=93.48  E-value=0.18  Score=28.83  Aligned_cols=30  Identities=13%  Similarity=0.219  Sum_probs=22.9

Q ss_pred             CCCCeEEEEEEcc-cC-CCeEEEEeCCCeeecC
Q psy11558         33 NTTGAQVECTARG-SP-NPEIIWIRSDGTAVGD   63 (74)
Q Consensus        33 ~g~~v~L~C~A~G-~P-~P~I~W~~~dG~~i~~   63 (74)
                      .|..++|-|.|.| .| .=+|+|.+ ||..+..
T Consensus        17 ~~~~~tL~C~v~gF~P~~i~V~W~~-ng~~~~~   48 (103)
T d1hdma1          17 FGKPNTLVCFVSNLFPPMLTVNWHD-HSVPVEG   48 (103)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEE-TTEECSS
T ss_pred             cCCCeEEEEEEeeEECCCCEEEEEE-CCeecCC
Confidence            4667899999999 66 35699985 7877654

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.37  E-value=0.12  Score=30.76  Aligned_cols=25  Identities=24%  Similarity=0.602  Sum_probs=19.7

Q ss_pred             ecCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         31 FSNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      +..|++++|.|+++|.-  .-.+.|++
T Consensus        12 ~kPG~sl~LsC~~SG~s~~~y~~~W~R   38 (115)
T d1f3dh1          12 VKPGASVKVSCKASGYSFIDYNIHWVK   38 (115)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ECCCCCEEEEEEEccccCCCCCcceeE
Confidence            45577899999999963  45688986

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.35  E-value=0.22  Score=29.73  Aligned_cols=31  Identities=10%  Similarity=0.280  Sum_probs=22.1

Q ss_pred             cCCCcEEecCCCCeEEEEEEcccCCC--eEEEEe
Q psy11558         24 EPPNRIDFSNTTGAQVECTARGSPNP--EIIWIR   55 (74)
Q Consensus        24 ~Pp~~v~~~~g~~v~L~C~A~G~P~P--~I~W~~   55 (74)
                      |+...+ +..|++++|.|+|+|..--  .+.|++
T Consensus         5 esg~~~-~kPG~sl~LsC~~SG~~~~~y~~~WvR   37 (117)
T d1um5h1           5 QSGPVL-VKPGGSVKMSCKASEYTLTSYLFQWVK   37 (117)
T ss_dssp             ECCCEE-ECTTCCEEEEEEESSCCCSCCEEEEEE
T ss_pred             eECCce-ECCCCCEEEEEEEccccCCCCcCccce
Confidence            433343 4457789999999997644  588986

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.13  Score=28.58  Aligned_cols=39  Identities=15%  Similarity=0.174  Sum_probs=28.5

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCe
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT   59 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~   59 (74)
                      -+|.+..+|...  +..|+.|+|.|.+.. +.-...|.+ +|.
T Consensus         3 PKPsLsa~P~~~--V~~G~~VTL~C~~~~-~~~~f~L~k-~g~   41 (95)
T d1olla1           3 PKPFIWAEPHFM--VPKEKQVTICCQGNY-GAVEYQLHF-EGS   41 (95)
T ss_dssp             CCCEEEEESCSE--EETTCCEEEEEECCT-TCCEEEEEE-TTE
T ss_pred             CCCEEEeeCCCc--ccCCCcEEEEEecCC-CccEEEEEE-CCC
Confidence            368888887554  347888999999764 567787776 564

>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.29  E-value=0.018  Score=33.45  Aligned_cols=41  Identities=24%  Similarity=0.443  Sum_probs=24.5

Q ss_pred             eEEEcCCCcEEecCCCCeEEEEEEcc-cCCC---eEEEEeCCCeee
Q psy11558         20 IFIKEPPNRIDFSNTTGAQVECTARG-SPNP---EIIWIRSDGTAV   61 (74)
Q Consensus        20 ~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P~P---~I~W~~~dG~~i   61 (74)
                      +|+..|........+..++|.|.|.| .|..   +++|.+ ||..+
T Consensus        15 V~i~pPs~~e~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~-~~~~~   59 (116)
T d1igyb3          15 VFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFV-DNVEV   59 (116)
T ss_dssp             EEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBS-SSCCB
T ss_pred             EEEECcChHHhcccCCCcEEEEEEecEeCCCCEEEEEECc-CCeEc
Confidence            55555432212334567999999999 4543   456875 55443

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.18  E-value=0.03  Score=31.51  Aligned_cols=27  Identities=33%  Similarity=0.545  Sum_probs=21.3

Q ss_pred             CeEEEEEEcccCCCe--EEEEeCCCeeecC
Q psy11558         36 GAQVECTARGSPNPE--IIWIRSDGTAVGD   63 (74)
Q Consensus        36 ~v~L~C~A~G~P~P~--I~W~~~dG~~i~~   63 (74)
                      .+.|.|.|+|--+..  |+|.+ ||..+..
T Consensus        17 ~~~L~C~~~gFyP~~i~vtW~~-~g~~~~~   45 (95)
T d1k5na1          17 EATLRCWALGFYPAEITLTWQR-DGEDQTQ   45 (95)
T ss_dssp             EEEEEEEEEEEBSSCCEEEEEE-TTEECGG
T ss_pred             CEEEEEEEEeEeCCCCEEEEEE-CCEEcCC
Confidence            599999999986655  59986 7876653

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=92.26  E-value=0.26  Score=29.50  Aligned_cols=25  Identities=20%  Similarity=0.453  Sum_probs=19.8

Q ss_pred             ecCCCCeEEEEEEcccCCC--eEEEEe
Q psy11558         31 FSNTTGAQVECTARGSPNP--EIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~P--~I~W~~   55 (74)
                      +..|++++|.|+++|..--  .+.|++
T Consensus        12 vkPG~sl~LsC~~SG~~~~~y~~~W~R   38 (120)
T d1dn0b1          12 LKPSETLSLTCAVYGGSFSDYYWSWIR   38 (120)
T ss_dssp             ECTTSCEEEEEEEESSCCSSCCEEEEE
T ss_pred             ECCCCCEEEEEEEccccCccCcceeee
Confidence            3457789999999997754  488987

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.95  E-value=0.42  Score=28.47  Aligned_cols=25  Identities=20%  Similarity=0.559  Sum_probs=19.9

Q ss_pred             ecCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         31 FSNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      +..|++++|.|+++|.-  .-.+.|++
T Consensus        12 ~kpG~sv~LsC~~SG~~~s~~~~~W~R   38 (121)
T d1j05b_          12 VEPGASVKLSCTASGFNIKDTYMHWVK   38 (121)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             ECCCCCEEEEEEEecCCCCCCCcceee
Confidence            45677899999999865  45789986

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.90  E-value=0.41  Score=28.49  Aligned_cols=32  Identities=13%  Similarity=0.457  Sum_probs=22.5

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      .|+...+ +..|++++|.|+++|..  .-.+.|++
T Consensus         5 ~qsg~~~-vkpG~sl~LsC~~SG~s~~~~~~~W~R   38 (120)
T d1pg7x1           5 QQSGPEL-VKPGASVKISCKASGYSFTGHLLNWVK   38 (120)
T ss_dssp             EECCCEE-ECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             eeECCcE-ECCCCCEEEEEEEccccCCCCCcceee
Confidence            3433443 45577899999999865  44689987

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=91.83  E-value=0.29  Score=29.15  Aligned_cols=25  Identities=20%  Similarity=0.511  Sum_probs=19.5

Q ss_pred             ecCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         31 FSNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      ...|++++|.|+++|..  .=.+.|++
T Consensus        12 ~kPg~sv~LsC~~SG~s~~~y~~~W~R   38 (117)
T d1iqdb1          12 KKPGASVKVSCKVSGYTLTELPVHWVR   38 (117)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ECCCCCEEEEEEEcCCCCCCCCEEEEE
Confidence            45678899999999964  34478987

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=91.78  E-value=0.33  Score=28.95  Aligned_cols=24  Identities=21%  Similarity=0.577  Sum_probs=18.8

Q ss_pred             cCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         32 SNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        32 ~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      ..|++++|.|+++|..  .-.+.|++
T Consensus        12 kPg~sl~LsC~~SG~~~s~y~~~W~R   37 (119)
T d1kxvc_          12 PAGGSLRLSCAASGNTLCTYDMSWYR   37 (119)
T ss_dssp             CTTCCEEEEEEEESCTTCCEEEEEEE
T ss_pred             CCCCCeEEEEEEcCCCccCCceeeee
Confidence            4567799999999976  44588986

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.71  E-value=0.15  Score=29.02  Aligned_cols=31  Identities=23%  Similarity=0.263  Sum_probs=21.5

Q ss_pred             CCcEEecCCCCeEEEEEEcccCCC---eEEEEeC
Q psy11558         26 PNRIDFSNTTGAQVECTARGSPNP---EIIWIRS   56 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~P~P---~I~W~~~   56 (74)
                      |..+....|++|+|+|+-.+.-.+   .+.|++-
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ   39 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQ   39 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEE
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEe
Confidence            345667788889999996543333   3789973

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=91.70  E-value=0.47  Score=28.15  Aligned_cols=38  Identities=21%  Similarity=0.404  Sum_probs=25.1

Q ss_pred             ecCCCCeEEEEEEcccCCC--eEEEEeCCCeeecCCCCceEEEEe
Q psy11558         31 FSNTTGAQVECTARGSPNP--EIIWIRSDGTAVGDVPGLRKYKYI   73 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~P--~I~W~~~dG~~i~~~~~~r~~~~~   73 (74)
                      +..|++++|.|+++|..--  .+.|++-     .+..++..+.|+
T Consensus        12 vkPg~sl~LsC~~SG~~~~~~~~~WvRQ-----~PGkglEwlg~i   51 (116)
T d7fabh1          12 VRPSQTLSLTCTVSGTSFDDYYWTWVRQ-----PPGRGLEWIGYV   51 (116)
T ss_dssp             ECTTSCEEEEEEEESSCSTTSEEEEEEE-----CTTSCCEEEEEE
T ss_pred             ECCCCCEEEEEEEeeecCCCCcceeceE-----CCCCcceeeeee
Confidence            3457789999999997644  5889872     334444444443

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=91.53  E-value=0.44  Score=28.75  Aligned_cols=32  Identities=22%  Similarity=0.371  Sum_probs=22.6

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccCC--CeEEEEe
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSPN--PEIIWIR   55 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P~--P~I~W~~   55 (74)
                      +|+...+ +..|++++|.|+++|..-  =.+.|++
T Consensus         5 ~esg~~~-~kpg~sl~lsC~~SG~~~~~y~~~WvR   38 (127)
T d1n0xh1           5 VQSGAEV-KKPGASVKVSCQASGYRFSNFVIHWVR   38 (127)
T ss_dssp             EECCCEE-ECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             EeECCce-ECCCCCEEEEEEEcCCCCCCCCEEEEE
Confidence            3444443 456778999999999663  3588987

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=91.46  E-value=0.32  Score=28.67  Aligned_cols=25  Identities=20%  Similarity=0.490  Sum_probs=19.6

Q ss_pred             ecCCCCeEEEEEEcccCCC--eEEEEe
Q psy11558         31 FSNTTGAQVECTARGSPNP--EIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~P--~I~W~~   55 (74)
                      +..|++++|.|+++|.---  .+.|++
T Consensus        12 vkPG~Sl~LsC~~SG~t~~~~~~~WvR   38 (109)
T d2ck0h1          12 VQPRGSLKLSCAASGFTFNTDAMNWVR   38 (109)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ECCCCCeEEEEEECCCcccccccccce
Confidence            4557789999999996644  688886

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=91.45  E-value=0.28  Score=29.34  Aligned_cols=25  Identities=24%  Similarity=0.488  Sum_probs=19.8

Q ss_pred             ecCCCCeEEEEEEcccCCC---eEEEEe
Q psy11558         31 FSNTTGAQVECTARGSPNP---EIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~P---~I~W~~   55 (74)
                      +..|++++|.|+++|..--   .+.|++
T Consensus        12 vkPg~sl~LsC~~SG~s~~s~y~~~WvR   39 (119)
T d1ncwh1          12 VKPSQSLSLTCTVTGYSITSDFAWNWIR   39 (119)
T ss_dssp             ECTTSCEEEEEEEESSCTTSSEEEEEEE
T ss_pred             ECCCCCEEEEEEEccccccCCCccccce
Confidence            3457789999999998764   378986

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.34  E-value=0.38  Score=28.71  Aligned_cols=25  Identities=20%  Similarity=0.571  Sum_probs=19.5

Q ss_pred             ecCCCCeEEEEEEcccCCC--eEEEEe
Q psy11558         31 FSNTTGAQVECTARGSPNP--EIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~P--~I~W~~   55 (74)
                      +..|++++|.|+++|..--  .+.|++
T Consensus        12 ~kPg~sl~LsC~~SG~~~~~y~~~WvR   38 (119)
T d1eapb1          12 VKPGASVKISCKASGYISTDHAIHWVK   38 (119)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ECCCCCEEEEEEEccCcccCCCCccce
Confidence            3457789999999997633  488986

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=91.21  E-value=0.33  Score=29.06  Aligned_cols=25  Identities=20%  Similarity=0.478  Sum_probs=18.5

Q ss_pred             ecCCCCeEEEEEEcccC----CCeEEEEe
Q psy11558         31 FSNTTGAQVECTARGSP----NPEIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P----~P~I~W~~   55 (74)
                      +..|++++|.|+++|.-    .-.+.|++
T Consensus        12 vkPg~sv~LsC~~SG~s~s~~~~~~~W~R   40 (126)
T d1etzb1          12 LQPSQTLSLTCSFSGFSLSTSGMGVGWIR   40 (126)
T ss_dssp             ECTTCCEEEEEEEESSCTTSTTEEEEEEE
T ss_pred             ECCCCCEEEEEEEeCCccCCCCCCCeEEe
Confidence            34577899999999843    34678985

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=91.14  E-value=0.44  Score=28.74  Aligned_cols=25  Identities=24%  Similarity=0.470  Sum_probs=19.0

Q ss_pred             ecCCCCeEEEEEEcccC----CCeEEEEe
Q psy11558         31 FSNTTGAQVECTARGSP----NPEIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P----~P~I~W~~   55 (74)
                      +..|++++|.|+++|..    ..-+.|++
T Consensus        12 vkpg~Sl~LsC~~SG~~~s~~~~~~~WyR   40 (132)
T d1tjgh1          12 VKPTQTLTLTCSFSGFSLSDFGVGVGWIR   40 (132)
T ss_dssp             ECTTCCEEEEEEEESSCTTSTTCEEEEEE
T ss_pred             ECCCCCeEEEEEEeCCCcCCCCCceEEEE
Confidence            34577899999999854    34689986

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.09  E-value=0.43  Score=28.39  Aligned_cols=32  Identities=19%  Similarity=0.415  Sum_probs=22.6

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      .|+...+ ...|++++|.|+++|.-  .-.+.|++
T Consensus         5 ~qsg~~~-~kPG~sl~LsC~~SG~s~s~~~~~WvR   38 (117)
T d1mfah1           5 QQSGTVV-ARPGASVKMSCKASGYTFTNYWMHWIK   38 (117)
T ss_dssp             EECCCEE-ECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             EeECCce-ECCCCCEEEEEEEcccCCCCCceEeee
Confidence            3444444 45677899999999854  55688886

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.03  E-value=0.6  Score=27.77  Aligned_cols=32  Identities=9%  Similarity=0.414  Sum_probs=22.6

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccCCC--eEEEEe
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSPNP--EIIWIR   55 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P~P--~I~W~~   55 (74)
                      .|+...+ ...|++++|.|+++|..-=  .+.|++
T Consensus         5 ~esg~~~-~kpg~sl~lsC~~SG~~~~~y~~~WvR   38 (118)
T d2jelh1           5 AQSGPEL-VRPGVSVKISCKGSGYTFTTYAMHWVK   38 (118)
T ss_dssp             EECCCEE-ECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             EeECCce-ECCCCCEEEEEEEcCCCCCCCceecce
Confidence            3433343 4567789999999997733  689987

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.95  E-value=0.19  Score=28.18  Aligned_cols=40  Identities=15%  Similarity=0.405  Sum_probs=26.3

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcc-cC-CCeEEEEeCCCee
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARG-SP-NPEIIWIRSDGTA   60 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P-~P~I~W~~~dG~~   60 (74)
                      +-+|+..|....  ..+..++|-|.|.| .| .=+|+|. .||..
T Consensus         6 P~V~~l~p~~~~--~~~~~~tl~Cl~~gf~P~~i~v~W~-~~~~~   47 (101)
T d1kcvh2           6 PSVFPLVPGSAT--AAASAVTLGCLVKGYFPEPVTVAWN-EGALS   47 (101)
T ss_dssp             CEEEEECCCSCC--TTCSEEEEEEEEEEEBSSCCEEEEG-GGTCC
T ss_pred             CEEEeECCCccc--cCCCeEEEEEEEEEEeCCCCEEEEe-cCCCc
Confidence            336666654332  23456999999999 56 3469996 46643

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=90.86  E-value=0.63  Score=27.58  Aligned_cols=25  Identities=20%  Similarity=0.503  Sum_probs=19.3

Q ss_pred             ecCCCCeEEEEEEcccCC--CeEEEEe
Q psy11558         31 FSNTTGAQVECTARGSPN--PEIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~--P~I~W~~   55 (74)
                      +..|++++|.|+++|..-  =.+.|++
T Consensus        12 vkPg~sl~LsC~~SG~s~~~y~~~WvR   38 (116)
T d1a2yb_          12 VAPSQSLSITCTVSGFSLTGYGVNWVR   38 (116)
T ss_dssp             ECTTSCEEEEEEEESSCTTSSEEEEEE
T ss_pred             ECCCCCeEEEEEEcccccCCCCCccce
Confidence            345778999999999763  3588987

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=90.85  E-value=0.4  Score=28.72  Aligned_cols=25  Identities=16%  Similarity=0.469  Sum_probs=19.5

Q ss_pred             ecCCCCeEEEEEEcccCCC--eEEEEe
Q psy11558         31 FSNTTGAQVECTARGSPNP--EIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~P--~I~W~~   55 (74)
                      +..|++++|.|+++|..-.  .+.|++
T Consensus        12 vkpg~sl~LsC~~SG~s~~~y~~~WvR   38 (122)
T d1q9rb1          12 VQSGGSLRLSCATSGFTFTDYYMSWVR   38 (122)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ECCCCCEEEEEEEcCCCCcCCccCccc
Confidence            3457789999999997644  588986

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.80  E-value=0.32  Score=28.18  Aligned_cols=22  Identities=18%  Similarity=0.533  Sum_probs=17.9

Q ss_pred             CCCeEEEEEEcccCCC--eEEEEe
Q psy11558         34 TTGAQVECTARGSPNP--EIIWIR   55 (74)
Q Consensus        34 g~~v~L~C~A~G~P~P--~I~W~~   55 (74)
                      |++++|.|+|+|..--  .+.|++
T Consensus         2 G~sl~LsC~~SG~s~~~y~~~WvR   25 (103)
T d1oari_           2 GASVKLSCKASGYTFTSYWMHWVK   25 (103)
T ss_dssp             CCCEEEEEECCSSCSTTSEEEEEE
T ss_pred             CCCeEEEEEEECCChhcCceeeEE
Confidence            5679999999997644  588986

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.66  E-value=0.082  Score=29.46  Aligned_cols=32  Identities=19%  Similarity=0.159  Sum_probs=21.8

Q ss_pred             EEecCCCCeEEEEEEcc--cCCCeEEEEeCCCeee
Q psy11558         29 IDFSNTTGAQVECTARG--SPNPEIIWIRSDGTAV   61 (74)
Q Consensus        29 v~~~~g~~v~L~C~A~G--~P~P~I~W~~~dG~~i   61 (74)
                      |.-..|++|+|.|....  .....|+|.+ ++..+
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~-~~~~i   38 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWER-GSTLV   38 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEE-TTEEE
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeec-cccce
Confidence            44557889999997432  2346799997 55554

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=90.60  E-value=0.48  Score=28.22  Aligned_cols=25  Identities=20%  Similarity=0.372  Sum_probs=18.8

Q ss_pred             ecCCCCeEEEEEEcccCC----CeEEEEe
Q psy11558         31 FSNTTGAQVECTARGSPN----PEIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~----P~I~W~~   55 (74)
                      +..|++++|.|+++|-..    -.+.|++
T Consensus        12 vkPg~sl~LsC~~SG~s~~~s~y~~~W~R   40 (120)
T d1ai1h1          12 IKPSQSLSLTCIVSGFSITRTNYCWHWIR   40 (120)
T ss_dssp             ECSSSCEEEEEEEESSCTTSTTEEEEEEE
T ss_pred             ECCCCCEEEEEEEcccccccCccccCccc
Confidence            345778999999999542    2588986

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=90.40  E-value=0.48  Score=28.09  Aligned_cols=25  Identities=20%  Similarity=0.541  Sum_probs=19.4

Q ss_pred             ecCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         31 FSNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      +..|++++|.|.|+|..  .-.+.|++
T Consensus        12 vkpG~sl~LsC~~SG~~~s~~~~~WvR   38 (114)
T d1indh1          12 VKPGGSLKLSCAASGFTLSGETMSWVR   38 (114)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ECCCCCEEEEEEECccCccCCceeccc
Confidence            34567899999999975  44588886

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.39  E-value=0.39  Score=28.48  Aligned_cols=25  Identities=20%  Similarity=0.518  Sum_probs=19.1

Q ss_pred             ecCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         31 FSNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      +..|++++|.|+++|..  .=.+.|++
T Consensus        12 ~kpG~Sv~LsC~~SG~s~~~y~~~WyR   38 (119)
T d1qnzh_          12 VKPGASVKMSCKASGYTFTTYPIEWMK   38 (119)
T ss_dssp             ECTTEEEEEEEEEETCCSSSSCEEEEE
T ss_pred             ECCCCCEEEEEEEeccCCCCCCcceee
Confidence            44577899999999864  33588987

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=90.29  E-value=0.29  Score=28.73  Aligned_cols=37  Identities=16%  Similarity=0.238  Sum_probs=23.2

Q ss_pred             cCCCCeEEEEEEcccC--CCeEEEEeCCCeeecCCCCceEEEEe
Q psy11558         32 SNTTGAQVECTARGSP--NPEIIWIRSDGTAVGDVPGLRKYKYI   73 (74)
Q Consensus        32 ~~g~~v~L~C~A~G~P--~P~I~W~~~dG~~i~~~~~~r~~~~~   73 (74)
                      ..|++++|.|+|+|.-  .-.+.|++-     .+-.++..+.|+
T Consensus         6 kPG~sl~LsC~~SG~~~~~~~~~WvRQ-----~PGkglewi~~i   44 (107)
T d1sjva_           6 QAGESLKLSCAASGNTFSGGFMGWYRQ-----APGKQRELVATI   44 (107)
T ss_dssp             CTTCCEEEEECCCC-----CCEEEEEE-----CTTSCCEEEEEE
T ss_pred             cCCCCcEEEEEECCCCccCCcEEEEEe-----CCccceeeeeee
Confidence            3577899999999853  455889872     344455555544

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.14  E-value=0.79  Score=27.36  Aligned_cols=32  Identities=19%  Similarity=0.463  Sum_probs=22.7

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      .++...+ +..|++++|.|+++|..  .=.+.|++
T Consensus         6 ~~sg~~~-vkpg~sl~LsC~~SG~~~~~y~~~WvR   39 (122)
T d1vgeh1           6 EQSGAEV-KKPGASVKVSCKASGYSFTSYGLHWVR   39 (122)
T ss_dssp             EECCCEE-ECTTCCEEEEEEECSSCGGGSEEEEEE
T ss_pred             EecCCcE-ECCCCCEEEEEEEcCCCccCCCceeeE
Confidence            3344443 45677899999999976  34588987

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.03  E-value=0.77  Score=27.25  Aligned_cols=25  Identities=24%  Similarity=0.593  Sum_probs=19.5

Q ss_pred             ecCCCCeEEEEEEcccCC--CeEEEEe
Q psy11558         31 FSNTTGAQVECTARGSPN--PEIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~--P~I~W~~   55 (74)
                      +..|++++|.|+++|..-  =.+.|++
T Consensus        12 vkPg~sl~LsC~~SG~~~~~~~~~W~R   38 (117)
T d1c5db1          12 VQPSQTLSLTCTVSGFPLTTNGVSWVR   38 (117)
T ss_dssp             ECTTSCEEEEEEECSSCTTTCCEEEEE
T ss_pred             ECCCCCeEEEEEEcCCCccCCceEccc
Confidence            345778999999999764  3588987

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=90.01  E-value=0.67  Score=27.53  Aligned_cols=25  Identities=20%  Similarity=0.461  Sum_probs=19.8

Q ss_pred             ecCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         31 FSNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      +..|++++|.|+++|..  .=.+.|++
T Consensus        12 vkpg~sl~LsC~~SG~~~~~y~~~WvR   38 (117)
T d1jpth1          12 VQPGGSLRLSCAASGFNIKEYYMHWVR   38 (117)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             ECCCCCEEEEEEEcCCCCcCCceEcce
Confidence            34577899999999976  44688986

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.96  E-value=0.56  Score=27.89  Aligned_cols=25  Identities=16%  Similarity=0.431  Sum_probs=19.6

Q ss_pred             ecCCCCeEEEEEEcccCCC--eEEEEe
Q psy11558         31 FSNTTGAQVECTARGSPNP--EIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~P--~I~W~~   55 (74)
                      ...|++++|.|+|+|.--.  .+.|++
T Consensus        12 ~kpg~sl~lsC~~SG~~~~~y~~~WvR   38 (117)
T d1jnhb1          12 ARPGASVKLSCRTSGYSFTTYWMQWVR   38 (117)
T ss_dssp             CCTTCCEEEEEEEESSCSSSSEEEEEE
T ss_pred             ECCCCCEEEEEEEcCCCCCCCceeeee
Confidence            3457789999999997644  588987

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.95  E-value=0.27  Score=27.08  Aligned_cols=40  Identities=10%  Similarity=0.097  Sum_probs=29.5

Q ss_pred             CCCccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         14 DDTLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        14 ~~~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      +..-+|.+...|. .+ +..|+.|+|.|.+.. +.-...|.++
T Consensus         3 G~lpkPsLsa~P~-~~-V~~G~~VTL~C~~~~-~~~~f~l~k~   42 (99)
T d1ucta1           3 GDFPMPFISAKSS-PV-IPLDGSVKIQCQAIR-EAYLTQLMII   42 (99)
T ss_dssp             GGSCCCCEEESSC-SE-EETTCCEEEEECCCT-TCSEEEEEEE
T ss_pred             CCCCCCEEEecCC-Cc-eeCCCeEEEEEcCCC-CCcEEEEEEC
Confidence            3456788888864 43 456888999999874 6678888864

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=89.80  E-value=0.8  Score=27.23  Aligned_cols=25  Identities=16%  Similarity=0.449  Sum_probs=19.7

Q ss_pred             ecCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         31 FSNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      +..|++++|.|+|+|..  .-.+.|++
T Consensus        12 ~kPG~sl~LsC~~SG~s~~~y~~~WvR   38 (118)
T d1nlbh1          12 KKPGETVKISCKASGYTFTDFSMHWVN   38 (118)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ECCCCCEEEEEEEcCCCCCCCceeccc
Confidence            45677899999999965  44689986

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=89.79  E-value=0.69  Score=27.68  Aligned_cols=32  Identities=16%  Similarity=0.349  Sum_probs=22.4

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccCC--CeEEEEe
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSPN--PEIIWIR   55 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P~--P~I~W~~   55 (74)
                      .|+...+ +..|++++|.|+|+|..-  =.+.|++
T Consensus         5 ~esg~~~-~kpg~sl~LsC~~SG~~~~~~~~~W~R   38 (124)
T d2b1hh1           5 EQSGAEV-KKSGESLKISCQTSGYSFSDYWIGWVR   38 (124)
T ss_dssp             EECCCEE-EETTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             eeECCce-ECCCCCEEEEEEEcCCCCcCCcCccce
Confidence            4444444 445778999999999763  3478886

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=89.65  E-value=0.66  Score=27.67  Aligned_cols=25  Identities=24%  Similarity=0.466  Sum_probs=18.6

Q ss_pred             ecCCCCeEEEEEEcccCC----CeEEEEe
Q psy11558         31 FSNTTGAQVECTARGSPN----PEIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~----P~I~W~~   55 (74)
                      +..|++++|.|.++|.--    -.+.|++
T Consensus        12 vkpg~sv~LsC~~SG~s~s~~~y~~~W~R   40 (123)
T d1r0ah1          12 VQPSQPFRLTCTFSGFSLSTSGIGVTWIR   40 (123)
T ss_dssp             ECTTCCEEEEEEEESSCTTSTTEEEEEEE
T ss_pred             ECCCCCeEEEEEEcCCccCCCCCeeeccc
Confidence            345778999999998542    2578986

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.64  E-value=0.78  Score=27.38  Aligned_cols=32  Identities=19%  Similarity=0.397  Sum_probs=22.0

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccCC--CeEEEEe
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSPN--PEIIWIR   55 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P~--P~I~W~~   55 (74)
                      .|+...+ +..|++++|.|+++|..-  =.+.|++
T Consensus         5 ~esg~~l-~kPg~sl~LsC~~SG~~~~~y~~~WvR   38 (125)
T d1rihh1           5 QQSGNEL-AKPGASMKMSCRASGYSFTSYWIHWLK   38 (125)
T ss_dssp             EECCCEE-ECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             EeECCce-ECCCCCEEEEEEEccCCCCCCCCcccc
Confidence            3433343 445778999999999663  3588886

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=89.61  E-value=0.68  Score=27.52  Aligned_cols=25  Identities=20%  Similarity=0.484  Sum_probs=19.5

Q ss_pred             ecCCCCeEEEEEEcccCCC--eEEEEe
Q psy11558         31 FSNTTGAQVECTARGSPNP--EIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~P--~I~W~~   55 (74)
                      +..|++++|.|+|+|.--.  .+.|++
T Consensus        12 ~kpg~sl~LsC~~SG~~~~~~~~~WvR   38 (119)
T d1rz7h1          12 KKPGATVKISCKASGYTFSDFYMYWVR   38 (119)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ECCCCCEEEEEEEcCCCCcCCceEccc
Confidence            3457789999999996644  589986

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.61  E-value=0.25  Score=27.68  Aligned_cols=31  Identities=13%  Similarity=0.286  Sum_probs=22.9

Q ss_pred             CCcEEecCCCCeEEEEEEcc----cC---CCeEEEEeC
Q psy11558         26 PNRIDFSNTTGAQVECTARG----SP---NPEIIWIRS   56 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G----~P---~P~I~W~~~   56 (74)
                      |..|.+.+|++|.|.|.-+.    ..   .-.+.|.+.
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~   45 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRA   45 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEEC
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEe
Confidence            56788899999999998752    11   235889875

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=89.60  E-value=0.03  Score=31.57  Aligned_cols=26  Identities=15%  Similarity=0.496  Sum_probs=21.3

Q ss_pred             EEecCCCCeEEEEEEcccCCCeEEEEe
Q psy11558         29 IDFSNTTGAQVECTARGSPNPEIIWIR   55 (74)
Q Consensus        29 v~~~~g~~v~L~C~A~G~P~P~I~W~~   55 (74)
                      +.+.+|++|+|+|...+ ....+.|++
T Consensus         3 lsV~eG~~vtL~C~~~~-~~~~i~WYr   28 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SINNLQWYR   28 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CEEEEEEEC
T ss_pred             ceECCCCCEEEEEEEeC-CcccEEEEE
Confidence            34668999999999886 467899997

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.51  E-value=0.31  Score=27.00  Aligned_cols=30  Identities=10%  Similarity=0.152  Sum_probs=22.9

Q ss_pred             CCcEEecCCCCeEEEEEEccc--CCCeEEEEe
Q psy11558         26 PNRIDFSNTTGAQVECTARGS--PNPEIIWIR   55 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~--P~P~I~W~~   55 (74)
                      ++.+...+|++++|.|.-.+.  -...+.|.+
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r   34 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCK   34 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEE
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEE
Confidence            556778889999999986543  245788986

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.23  E-value=0.28  Score=28.73  Aligned_cols=37  Identities=14%  Similarity=0.405  Sum_probs=25.6

Q ss_pred             CcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeecCCCCc
Q psy11558         27 NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVGDVPGL   67 (74)
Q Consensus        27 ~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~~~~~~   67 (74)
                      -.|.++ |++|+|.|.-.+.  -.|+|.+ |+..+....+-
T Consensus         8 ykVSIS-GTtV~LTCP~~~~--~~I~Wkk-n~~~i~g~~~~   44 (100)
T d1jbja2           8 YKVSIS-GTSVELTCPLDSD--ENLKWEK-NGQELPQKHDK   44 (100)
T ss_dssp             CEEEEE-TTEEEEECSSCCC--TTCEEEE-TTEEECSCCCS
T ss_pred             EEEEEe-CCEEEEECCCCCC--CceEEee-ccccCCCCCCc
Confidence            345555 6679999997763  5799986 67666655443

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=89.12  E-value=0.52  Score=28.53  Aligned_cols=25  Identities=32%  Similarity=0.623  Sum_probs=20.0

Q ss_pred             ecCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         31 FSNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      ...|++++|.|+++|..  .-.+.|++
T Consensus        12 ~kPg~sl~LsC~~SG~~~s~y~~~WvR   38 (130)
T d1rzga1          12 KKPGSSVKVSCKASGGTFSNYAINWVR   38 (130)
T ss_dssp             ECTTCCEEEEEECCSSCGGGCCEEEEE
T ss_pred             ECCCCCEEEEEEEcCCCCCCCceEccc
Confidence            45577899999999975  45789987

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=88.95  E-value=0.8  Score=27.52  Aligned_cols=31  Identities=19%  Similarity=0.451  Sum_probs=21.4

Q ss_pred             cCCCcEEecCCCCeEEEEEEcccCC--CeEEEEe
Q psy11558         24 EPPNRIDFSNTTGAQVECTARGSPN--PEIIWIR   55 (74)
Q Consensus        24 ~Pp~~v~~~~g~~v~L~C~A~G~P~--P~I~W~~   55 (74)
                      |+...+ +..|++++|.|+++|.--  =.+.|++
T Consensus         6 esg~~~-~kPg~sl~LsC~~SG~s~~~y~~~WvR   38 (127)
T d2fx7h1           6 QSGAEV-KRPGSSVTVSCKASGGSFSTYALSWVR   38 (127)
T ss_dssp             ECCCEE-ECTTCCEEEEEEEESSCSTTSCEEEEE
T ss_pred             eECCce-ECCCCCEEEEEEEcCCCCCCCCeEEEE
Confidence            333343 345778999999999653  3488986

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=88.93  E-value=0.71  Score=27.40  Aligned_cols=32  Identities=19%  Similarity=0.461  Sum_probs=22.3

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccCC--CeEEEEe
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSPN--PEIIWIR   55 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P~--P~I~W~~   55 (74)
                      .|+...+ ...|++++|.|+++|..-  =.+.|++
T Consensus         5 ~esg~~~-~kPg~sl~LsC~~SG~s~~~~~~~WvR   38 (116)
T d1mjuh1           5 QQPGAEL-VKPGASVKLSCKASGYTFTNYWINWVK   38 (116)
T ss_dssp             ECCSEEE-ECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             eeECCcE-ECCCCCEEEEEEEccCccccCceEeee
Confidence            3433333 456778999999999663  4588987

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.79  E-value=0.68  Score=25.74  Aligned_cols=40  Identities=10%  Similarity=0.229  Sum_probs=27.8

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCe
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT   59 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~   59 (74)
                      -+|.+..+|.. + +..|+.|+|.|.......=...|.+ ||.
T Consensus         4 PkP~Lsa~P~~-~-V~~G~~VTL~C~~~~~~~~~f~L~k-~g~   43 (96)
T d1ucta2           4 GKPFLSADRGL-V-LMPGENISLTCSSAHIPFDRFSLAK-EGE   43 (96)
T ss_dssp             CCCEEEESSCS-E-ECTTCCCEEEEECSSSCCSEEEEEE-TTC
T ss_pred             CCCEEEEeCCC-c-cCCCCeEEEEEeCCCCCceEEEEEE-CCc
Confidence            47888888644 3 5678889999986333334677886 554

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=88.59  E-value=0.74  Score=27.41  Aligned_cols=24  Identities=25%  Similarity=0.558  Sum_probs=18.8

Q ss_pred             cCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         32 SNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        32 ~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      ..|++++|.|+|+|..  .=.+.|++
T Consensus        13 kPg~sl~LsC~~SG~s~s~y~~~WvR   38 (122)
T d1bz7b1          13 QPGGSRKLSCAASGFTFSNFGMHWVR   38 (122)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CCCCCeEEEEEEcCCCCcCCceEccc
Confidence            3467899999999976  34588987

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=88.35  E-value=1.2  Score=26.28  Aligned_cols=25  Identities=16%  Similarity=0.510  Sum_probs=19.4

Q ss_pred             ecCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         31 FSNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      +..|++++|.|+++|..  .=.+.|++
T Consensus        12 ~kPg~sl~LsC~~SG~~~~~~~~~WvR   38 (118)
T d1ct8b1          12 VKPGASVKLSCKTSGFTFSSSYINWLK   38 (118)
T ss_dssp             ECTTCCEEEEEEEESSCSTTCEEEEEE
T ss_pred             ECCCCCEEEEEEEccccCCCCCCcccE
Confidence            44577899999999955  34688886

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=88.32  E-value=0.69  Score=27.77  Aligned_cols=25  Identities=20%  Similarity=0.437  Sum_probs=19.6

Q ss_pred             ecCCCCeEEEEEEcccCCC--eEEEEe
Q psy11558         31 FSNTTGAQVECTARGSPNP--EIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~P--~I~W~~   55 (74)
                      ...|++++|.|+|+|..--  .+.|++
T Consensus        12 ~kPG~sl~LsC~~SG~~~~~y~~~WvR   38 (124)
T d1yedb1          12 VRPGTSVKLSCKTSGYIFTSYWIHWLK   38 (124)
T ss_dssp             ECTTCEEEEEEEEESSCGGGSCEEEEE
T ss_pred             ECCCCCEEEEEEEcCCCccCCccccce
Confidence            3457789999999997643  588987

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=88.31  E-value=0.87  Score=27.16  Aligned_cols=25  Identities=24%  Similarity=0.606  Sum_probs=19.6

Q ss_pred             ecCCCCeEEEEEEcccCCC--eEEEEe
Q psy11558         31 FSNTTGAQVECTARGSPNP--EIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~P--~I~W~~   55 (74)
                      +..|++++|.|+|+|.--.  .+.|++
T Consensus        11 vkpg~sl~LsC~~SG~~~~~~~~~WvR   37 (124)
T d1zvya1          11 VQAGGSLRLSCAASGSTDSIEYMTWFR   37 (124)
T ss_dssp             CCTTCCEEEEEEEESCSTTCCEEEEEE
T ss_pred             ECCCCCeEEEEEEcCcccccccccccc
Confidence            3457789999999997644  689987

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=88.31  E-value=0.58  Score=28.14  Aligned_cols=24  Identities=21%  Similarity=0.412  Sum_probs=19.3

Q ss_pred             cCCCCeEEEEEEcccCC---CeEEEEe
Q psy11558         32 SNTTGAQVECTARGSPN---PEIIWIR   55 (74)
Q Consensus        32 ~~g~~v~L~C~A~G~P~---P~I~W~~   55 (74)
                      ..|++++|.|+++|..-   -.+.|++
T Consensus        13 kPg~sl~LsC~~SG~s~~s~y~~~WvR   39 (127)
T d3cx5j1          13 QPSQSLSLTCSVTGYSITSGYYWNWIR   39 (127)
T ss_dssp             CTTSCEEEEEEEESSCTTTSSEEEEEE
T ss_pred             CCCCCEEEEEEEecccccCCCcceeee
Confidence            45778999999999754   4689987

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=88.07  E-value=0.84  Score=27.08  Aligned_cols=25  Identities=20%  Similarity=0.441  Sum_probs=19.3

Q ss_pred             ecCCCCeEEEEEEcccCCC--eEEEEe
Q psy11558         31 FSNTTGAQVECTARGSPNP--EIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~P--~I~W~~   55 (74)
                      +..|++++|.|+++|..--  .+.|++
T Consensus        12 vkpg~sl~LsC~~SG~~~s~y~~~WvR   38 (118)
T d2fbjh1          12 VQPGGSLKLSCAASGFDFSKYWMSWVR   38 (118)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ECCCCCEEEEEEECCccccCCceeeee
Confidence            3457789999999997644  578886

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=87.95  E-value=1.6  Score=26.18  Aligned_cols=32  Identities=22%  Similarity=0.449  Sum_probs=22.3

Q ss_pred             EcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         23 KEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      .|+...+ +..|++++|.|+|+|..  .=.+.|++
T Consensus         4 ~esg~~~-~kPg~sl~LsC~~SG~~~~~~~~~WvR   37 (130)
T d1rhhb1           4 EQSGAEV-KKPGSSVQVSCKASGGTFSMYGFNWVR   37 (130)
T ss_dssp             EECCCEE-ECTTCCEEEEEEETTSCCTTCEEEEEE
T ss_pred             eccCCce-ECCCCCeEEEEEEeCCCccCCCcceEE
Confidence            3434443 45677899999999965  33588986

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=87.70  E-value=1.1  Score=26.85  Aligned_cols=25  Identities=16%  Similarity=0.380  Sum_probs=19.4

Q ss_pred             ecCCCCeEEEEEEcccCC--CeEEEEe
Q psy11558         31 FSNTTGAQVECTARGSPN--PEIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~--P~I~W~~   55 (74)
                      ...|++++|.|+|+|..-  =.+.|++
T Consensus        11 ~kPg~sl~LsC~~SG~~~~~y~~~WvR   37 (126)
T d1lmka1          11 MKPGRSLKISCKTTGYIFSNYWIEWVK   37 (126)
T ss_dssp             ECTTCCEEEEEEEESSCTTTEEEEEEE
T ss_pred             ECCCCCeEEEEEEccCCCCCCCCccee
Confidence            455778999999999763  3488886

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=87.54  E-value=1.1  Score=26.85  Aligned_cols=24  Identities=17%  Similarity=0.520  Sum_probs=18.4

Q ss_pred             cCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         32 SNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        32 ~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      ..|++++|.|+|+|.-  .-.+.|++
T Consensus        13 kpg~sl~LsC~~SG~~~~~~~~~WvR   38 (127)
T d2fb4h1          13 QPGRSLRLSCSSSGFIFSSYAMYWVR   38 (127)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CCCCCeEEEEEECCCCccCCceeeee
Confidence            4567799999999964  44578886

>d2oz4a1 b.1.1.3 (A:283-366) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.41  E-value=0.58  Score=26.52  Aligned_cols=37  Identities=27%  Similarity=0.509  Sum_probs=26.5

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeee
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAV   61 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i   61 (74)
                      .+|..+...+   ..++|+.|++.|.|+  |.+.++  . +|.+-
T Consensus         2 p~P~Ltlsep---~v~eGt~VtVtC~a~--~~a~v~--L-~G~p~   38 (84)
T d2oz4a1           2 PAPNVILTKP---EVSEGTEVTVKCEAH--PRAKVT--L-NGVPA   38 (84)
T ss_dssp             CCCEEEESCS---EEETTCEEEEEEECC--TTSEEE--E-SSCSS
T ss_pred             CCCceEeccC---cCCCCCEEEEEEecC--CCcEEE--E-ccCCC
Confidence            3567776644   357899999999998  566776  3 67653

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=87.39  E-value=0.19  Score=28.42  Aligned_cols=24  Identities=33%  Similarity=0.625  Sum_probs=18.2

Q ss_pred             CeEEEEEEcccCCC--eEEEEeCCCee
Q psy11558         36 GAQVECTARGSPNP--EIIWIRSDGTA   60 (74)
Q Consensus        36 ~v~L~C~A~G~P~P--~I~W~~~dG~~   60 (74)
                      .++|.|.|.|-=+.  +|+|++ ||..
T Consensus        16 ~vtL~C~~~gFyP~~I~v~W~~-ng~~   41 (98)
T d1u58a1          16 GMRLRCFARDYYPADLEIRWWK-DDGG   41 (98)
T ss_dssp             CEEEEEEEEEEBSSCEEEEEEE-ECSS
T ss_pred             cEEEEEEEEEEcCCCCEEEEEE-CCcc
Confidence            59999999997544  489986 5543

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=87.14  E-value=1.2  Score=26.52  Aligned_cols=25  Identities=28%  Similarity=0.500  Sum_probs=19.4

Q ss_pred             ecCCCCeEEEEEEcccCCC--eEEEEe
Q psy11558         31 FSNTTGAQVECTARGSPNP--EIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~P--~I~W~~   55 (74)
                      +..|++++|.|+|+|..--  .+.|++
T Consensus        12 vkpg~sl~LsC~vSG~s~~~~~~~WvR   38 (120)
T d1ad9b1          12 KKPGSSVKVSCKASGYTFTDYYINWMR   38 (120)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             ECCCCCEEEEEEEcCCCCcCCccccce
Confidence            3457789999999996644  588986

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=87.08  E-value=1.2  Score=27.00  Aligned_cols=25  Identities=24%  Similarity=0.555  Sum_probs=19.3

Q ss_pred             ecCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         31 FSNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      +..|++++|.|+++|..  .-.+.|++
T Consensus        12 vkPG~Sl~LsC~~SG~s~~~y~~~WvR   38 (135)
T d1ieha_          12 VQPGGSLRVSCAASGFTFSSYHMAWVR   38 (135)
T ss_dssp             ECTTCEEEEEEEEESSCTTTSCEEEEE
T ss_pred             ECCCCCeEEEEEEcCCCCcCCceeccc
Confidence            34577899999999965  44588986

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.06  E-value=0.61  Score=26.08  Aligned_cols=25  Identities=4%  Similarity=0.088  Sum_probs=18.6

Q ss_pred             cCCCCeEEEEEEcccCCCeEEEEeC
Q psy11558         32 SNTTGAQVECTARGSPNPEIIWIRS   56 (74)
Q Consensus        32 ~~g~~v~L~C~A~G~P~P~I~W~~~   56 (74)
                      .+|.+|.|.|...-.....+.|.+.
T Consensus        12 ~~G~~V~L~c~~~p~~~~~~~W~k~   36 (107)
T d1l6za1          12 AEDNNVLLLVHNLPLALGAFAWYKG   36 (107)
T ss_dssp             CTTCCEEEEEESCCTTCSEEEEEES
T ss_pred             cCCCCEEEEecCCCCCceEEEEEeC
Confidence            4788899999733333678999974

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=86.93  E-value=1.1  Score=26.90  Aligned_cols=24  Identities=21%  Similarity=0.560  Sum_probs=19.0

Q ss_pred             cCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         32 SNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        32 ~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      ..|++++|.|+++|..  .-.+.|++
T Consensus        13 kPg~sl~LsC~~SG~~~~~y~~~WvR   38 (126)
T d1dfbh1          13 QPGRSLRLSCAASGFTFNDYAMHWVR   38 (126)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CCCCCeEEEEEECCccccCCcceece
Confidence            4567799999999966  44688987

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=86.48  E-value=1.1  Score=26.69  Aligned_cols=24  Identities=25%  Similarity=0.522  Sum_probs=19.1

Q ss_pred             cCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         32 SNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        32 ~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      ..|++++|.|+|+|..  .=.+.|++
T Consensus        13 kpg~sl~LsC~~SG~~~s~y~~~W~R   38 (127)
T d1i3ua_          13 QAGDSLKLSCEASGDSIGTYVIGWFR   38 (127)
T ss_dssp             CTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             CCCCCeEEEEEEcCCCCCCCceEeee
Confidence            4577899999999964  44688986

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.45  E-value=0.4  Score=27.54  Aligned_cols=30  Identities=23%  Similarity=0.386  Sum_probs=24.0

Q ss_pred             CcEEecCCCCeEEEEEEccc--CCCeEEEEeC
Q psy11558         27 NRIDFSNTTGAQVECTARGS--PNPEIIWIRS   56 (74)
Q Consensus        27 ~~v~~~~g~~v~L~C~A~G~--P~P~I~W~~~   56 (74)
                      +.+.+.+|++++|.|..+|.  ..-.+.|.+-
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq   34 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRL   34 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEEC
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEE
Confidence            45567889999999999875  4667899973

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=86.32  E-value=1.4  Score=26.19  Aligned_cols=25  Identities=20%  Similarity=0.514  Sum_probs=19.2

Q ss_pred             ecCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         31 FSNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      +..|++++|.|+++|..  .=.+.|++
T Consensus        12 vkPG~sl~LsC~~SG~s~~~y~~~WvR   38 (123)
T d1mqkh_          12 VQPGGSLKLSCAASGFTFSSYTMSWVR   38 (123)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ECCCCCEEEEEEECcccCcCCceEeee
Confidence            34577899999999976  33578986

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=86.19  E-value=1.6  Score=25.77  Aligned_cols=25  Identities=20%  Similarity=0.422  Sum_probs=19.3

Q ss_pred             ecCCCCeEEEEEEcccCC--CeEEEEe
Q psy11558         31 FSNTTGAQVECTARGSPN--PEIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~--P~I~W~~   55 (74)
                      +..|++++|.|+|+|..-  =.+.|++
T Consensus        12 vkPG~Sl~LsC~~SG~~~~~y~~~WvR   38 (118)
T d1lo4h1          12 VKPGGSLTLSCEASGFTLRTYGMSWVR   38 (118)
T ss_dssp             ECTTCCEEEEEEEESSCTTTSEEEEEE
T ss_pred             ECCCCCeEEEEEECCCcccCCCccccc
Confidence            345778999999999763  3688886

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=86.06  E-value=1.5  Score=25.94  Aligned_cols=25  Identities=16%  Similarity=0.477  Sum_probs=19.3

Q ss_pred             ecCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         31 FSNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      +..|++++|.|+++|..  .=.+.|++
T Consensus        12 vkpG~sl~LsC~~SG~s~~~y~~~WvR   38 (120)
T d1dlfh_          12 VQPGGSMKLSCATSGFTFSDAWMDWVR   38 (120)
T ss_dssp             ECTTCCEEEEEEEESSCTTTCEEEEEE
T ss_pred             ECCCCCeEEEEEECCccCcCCceEeee
Confidence            34577899999999875  45588886

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=85.64  E-value=1.3  Score=24.46  Aligned_cols=40  Identities=15%  Similarity=0.247  Sum_probs=29.0

Q ss_pred             CccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCe
Q psy11558         16 TLGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT   59 (74)
Q Consensus        16 ~~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~   59 (74)
                      .-+|.+..+|...  +..|+.|+|.|.+.- +.-...+.| ||.
T Consensus         4 ~pkPsLsa~P~~~--V~~G~~VTL~C~~~~-~~~~f~L~k-~g~   43 (99)
T d1nkra2           4 YEKPSLSAQPGPT--VLAGENVTLSCSSRS-SYDMYHLSR-EGE   43 (99)
T ss_dssp             SCCCEEEEESCSE--ECTTCEEEEEEEESS-CCSEEEEEE-TTC
T ss_pred             CCCCEEEEeCCCc--ccCCCeEEEEECCCC-CccEEEEEE-CCC
Confidence            3578888996544  467888999998765 566777776 553

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=85.32  E-value=0.33  Score=26.80  Aligned_cols=27  Identities=19%  Similarity=0.196  Sum_probs=20.6

Q ss_pred             CeEEEEEEcccCCC--eEEEEeCCCeeecC
Q psy11558         36 GAQVECTARGSPNP--EIIWIRSDGTAVGD   63 (74)
Q Consensus        36 ~v~L~C~A~G~P~P--~I~W~~~dG~~i~~   63 (74)
                      .+.|-|.|.|-=++  +|+|+ .||..+..
T Consensus        15 ~~tl~Cl~~gF~P~~i~v~W~-~~g~~~~~   43 (86)
T d1hxma2          15 GTNVACLVKEFYPKDIRINLV-SSKKITEF   43 (86)
T ss_dssp             TTEEEEEEESCBSSCCEEEEE-CSSEEEEC
T ss_pred             CCEEEEEEeeEECCCCEEEEE-ECCEEccC
Confidence            47999999997555  46798 58887654

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.24  E-value=0.89  Score=25.11  Aligned_cols=39  Identities=10%  Similarity=0.227  Sum_probs=28.1

Q ss_pred             ccceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCe
Q psy11558         17 LGPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT   59 (74)
Q Consensus        17 ~~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~   59 (74)
                      -+|.+..+|...  +..|+.|+|.|.+.. +.-...+.| ||.
T Consensus         3 pkPsLsa~P~~~--V~~G~~VTL~C~~~~-~~~~f~L~K-eg~   41 (93)
T d1olla2           3 DTPTLSVHPGPE--VISGEKVTFYCRLDT-ATSMFLLLK-EGR   41 (93)
T ss_dssp             CCCEEEEESCSE--EETTCEEEEEEECSS-SCSEEEEEE-ESS
T ss_pred             CCCEEEEeCCCc--ccCCCcEEEEECCCC-CCCEEEEEE-CCC
Confidence            468888886544  346778999999764 566788876 443

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.12  E-value=0.67  Score=25.26  Aligned_cols=32  Identities=19%  Similarity=0.361  Sum_probs=20.1

Q ss_pred             EEecCCCCeEEEEEEcccCCCe-----EEEEeCCCee
Q psy11558         29 IDFSNTTGAQVECTARGSPNPE-----IIWIRSDGTA   60 (74)
Q Consensus        29 v~~~~g~~v~L~C~A~G~P~P~-----I~W~~~dG~~   60 (74)
                      |....|++|.|.|..+..+...     +.|.+.++..
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~   40 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLV   40 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccce
Confidence            4455788999999987544222     4455544443

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=84.95  E-value=1.5  Score=26.18  Aligned_cols=24  Identities=17%  Similarity=0.511  Sum_probs=17.4

Q ss_pred             cCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         32 SNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        32 ~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      ..|++++|.|+|+|.-  .=.+.|++
T Consensus        12 kPg~sl~LsC~~SG~~~s~y~~~WvR   37 (126)
T d1rjca1          12 QAGQSLRLSCATSGATSSSNCMGWFR   37 (126)
T ss_dssp             CTTCCEEEEEECC-CTTTCSEEEEEE
T ss_pred             CCCCCeEEEEEECCCCCcCCceEeee
Confidence            3466799999999955  34578987

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.90  E-value=0.78  Score=24.53  Aligned_cols=22  Identities=9%  Similarity=0.181  Sum_probs=17.2

Q ss_pred             EcCCCcEEecCCCCeEEEEEEc
Q psy11558         23 KEPPNRIDFSNTTGAQVECTAR   44 (74)
Q Consensus        23 ~~Pp~~v~~~~g~~v~L~C~A~   44 (74)
                      ++-|+.+...+|+.|.|.|.-.
T Consensus         4 V~~P~~v~~~~G~~V~l~C~f~   25 (118)
T d1qfoa_           4 VSSPKNVQGLSGSCLLIPCIFS   25 (118)
T ss_dssp             EECCSEEEEETTSCEEECCEEE
T ss_pred             EECCCEEEEecCCcEEEEEEEe
Confidence            3335677888999999999865

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=84.69  E-value=0.19  Score=28.72  Aligned_cols=39  Identities=21%  Similarity=0.510  Sum_probs=24.3

Q ss_pred             ccc-eEEEcCCCcEEecCCCCeEEEEEEcc-cC-CCeEEEEeCCC
Q psy11558         17 LGP-IFIKEPPNRIDFSNTTGAQVECTARG-SP-NPEIIWIRSDG   58 (74)
Q Consensus        17 ~~P-~fv~~Pp~~v~~~~g~~v~L~C~A~G-~P-~P~I~W~~~dG   58 (74)
                      .+| +++..| ..-+..+ ..++|.|.|.| .| .-+|+|.+ ||
T Consensus        11 ~~P~V~l~~p-~~~~~~~-~~~tL~C~v~gf~P~~i~v~W~~-~~   52 (111)
T d1pfca_          11 RIPEVYLLPP-PRNELSK-KKVSLTCMITGFYPADINVEWDS-SE   52 (111)
T ss_dssp             CCCCCCBCCC-CSCCCCT-TSCCEEEEEESCCSSCCEEESSS-CC
T ss_pred             CCCEEEEECC-CHHHhcC-CceEEEEEEEeeECCCcEEEEee-CC
Confidence            445 455444 3323344 45999999999 45 35799975 55

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.37  E-value=1.1  Score=24.84  Aligned_cols=39  Identities=21%  Similarity=0.523  Sum_probs=22.7

Q ss_pred             cc-eEEEcCCCcEEecCCCCeEEEEEEccc-C-CCeEEEEeCCCe
Q psy11558         18 GP-IFIKEPPNRIDFSNTTGAQVECTARGS-P-NPEIIWIRSDGT   59 (74)
Q Consensus        18 ~P-~fv~~Pp~~v~~~~g~~v~L~C~A~G~-P-~P~I~W~~~dG~   59 (74)
                      +| +|+..|... . ..++.+.|-|.|.|- | .-+|+|. .||.
T Consensus         5 ~PsV~~l~p~~~-~-~~~~~~~l~Cl~~gf~P~~i~v~W~-~~~~   46 (102)
T d1mjuh2           5 APSVYPLAPVCG-D-TSGSSVTLGCLVKGYFPEPVTLTWN-SGSL   46 (102)
T ss_dssp             CCEEEEECCCC--------CEEEEEEEEEEBSSCCEEEEG-GGTB
T ss_pred             CCEEEEECCCcc-c-cCCCcEEEEEEEeeeeCCCeEEEEC-cCCc
Confidence            44 566655433 2 234569999999994 5 3479995 4563

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=84.01  E-value=2.7  Score=25.25  Aligned_cols=25  Identities=24%  Similarity=0.543  Sum_probs=18.9

Q ss_pred             ecCCCCeEEEEEEcccCC--CeEEEEe
Q psy11558         31 FSNTTGAQVECTARGSPN--PEIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~--P~I~W~~   55 (74)
                      +..|++++|.|+|+|..-  =.+.|++
T Consensus        11 vkPg~sl~LsC~~SG~~~s~y~~~WvR   37 (133)
T d1rzfh1          11 NKPGSSVKVSCQASGATLNSHAFSWVR   37 (133)
T ss_dssp             ECTTCCEEEEEEESSSCSTTEEEEEEE
T ss_pred             ECCCCCEEEEEEEcCCCccCCCCccce
Confidence            345778999999999753  3478876

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=83.99  E-value=1.9  Score=25.50  Aligned_cols=25  Identities=20%  Similarity=0.488  Sum_probs=18.9

Q ss_pred             ecCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         31 FSNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      +..|++++|.|+++|.-  .=.+.|++
T Consensus        12 vkpg~sl~LsC~~SG~s~s~y~~~W~R   38 (121)
T d1ol0a_          12 VQPGGSLRLSCAASGFTFSSYAMSWFR   38 (121)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ECCCCCeEEEEEEcCcCCcCCceEcce
Confidence            34577899999999955  33588986

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=83.74  E-value=2.3  Score=25.35  Aligned_cols=25  Identities=24%  Similarity=0.531  Sum_probs=19.0

Q ss_pred             ecCCCCeEEEEEEcccCCC--eEEEEe
Q psy11558         31 FSNTTGAQVECTARGSPNP--EIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~P--~I~W~~   55 (74)
                      +..|++++|.|+++|..--  .+.|++
T Consensus        12 ~kpg~sl~LsC~~SG~s~~~y~~~WvR   38 (128)
T d2nxyd1          12 KKPGSSVKVSCKASGDTFIRYSFTWVR   38 (128)
T ss_dssp             ECTTCCEEEEEEEESSCGGGEEEEEEE
T ss_pred             ECCCCCEEEEEEEcCCCccCCCcccce
Confidence            3457789999999997643  478875

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=83.52  E-value=1.8  Score=25.72  Aligned_cols=25  Identities=24%  Similarity=0.522  Sum_probs=19.3

Q ss_pred             ecCCCCeEEEEEEcccCCC--eEEEEe
Q psy11558         31 FSNTTGAQVECTARGSPNP--EIIWIR   55 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~P--~I~W~~   55 (74)
                      +..|++++|.|+++|.---  .+.|++
T Consensus        12 vkPG~sl~LsC~~SG~~~~~~~~~WvR   38 (121)
T d1nfdf1          12 VQPGSSLKVSCAASGFTFSDFWMYWVR   38 (121)
T ss_dssp             ECTTCEEEEEEEEESSCGGGEEEEEEE
T ss_pred             ECCCCCEEEEEEEcCCCCcCCceeece
Confidence            4567789999999996633  478987

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.32  E-value=0.33  Score=26.96  Aligned_cols=31  Identities=13%  Similarity=0.397  Sum_probs=22.4

Q ss_pred             CCcEEecCCCCeEEEEEEccc---CCCeEEEEeC
Q psy11558         26 PNRIDFSNTTGAQVECTARGS---PNPEIIWIRS   56 (74)
Q Consensus        26 p~~v~~~~g~~v~L~C~A~G~---P~P~I~W~~~   56 (74)
                      |..|...+|++|+|.|.-.+.   ..-.+.|.+.
T Consensus         6 P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~   39 (116)
T d1xeda_           6 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQ   39 (116)
T ss_dssp             CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC
T ss_pred             CCEEEEcCCCCEEEEEEECCCCCccceeEEEEEc
Confidence            456777889999999986532   2345789874

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.17  E-value=0.67  Score=26.62  Aligned_cols=32  Identities=25%  Similarity=0.639  Sum_probs=21.8

Q ss_pred             CcEEecCCCCeEEEEEEcccCCCeEEEEeCCCeeec
Q psy11558         27 NRIDFSNTTGAQVECTARGSPNPEIIWIRSDGTAVG   62 (74)
Q Consensus        27 ~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~~i~   62 (74)
                      -.|.++ |++|.|.|.-  ++...|+|.+ ++..+.
T Consensus         4 ~~VsIS-GTtV~LTCP~--~~~~~i~W~~-n~~~~~   35 (91)
T d1xiwa_           4 YKVSIS-GTTVILTCPQ--YPGSEILWQH-NDKNIG   35 (91)
T ss_dssp             CEEEEE-TTEEEEECSS--CTTSCEEEEE-TTEEES
T ss_pred             eEEEEe-CCEEEEECCC--CCCCceeeee-cccccc
Confidence            445555 6679999973  3568899997 444443

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=83.10  E-value=2.5  Score=24.98  Aligned_cols=24  Identities=21%  Similarity=0.430  Sum_probs=18.7

Q ss_pred             cCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         32 SNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        32 ~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      ..|++++|.|+++|.-  .-.+.|++
T Consensus        13 kPg~sl~LsC~~SG~s~s~y~~~WvR   38 (121)
T d2p49b1          13 QAGGSLRLSCAASGYAYTYIYMGWFR   38 (121)
T ss_dssp             ETTCCEEEEEEEESCSSCCSEEEEEE
T ss_pred             CCCCCeEEEEEEcCCCcccCceeecc
Confidence            3467799999999964  45688987

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.02  E-value=1.4  Score=24.58  Aligned_cols=29  Identities=3%  Similarity=0.006  Sum_probs=18.7

Q ss_pred             ecCCCCeEEEEEEcccCCCe---EEEEeCCCe
Q psy11558         31 FSNTTGAQVECTARGSPNPE---IIWIRSDGT   59 (74)
Q Consensus        31 ~~~g~~v~L~C~A~G~P~P~---I~W~~~dG~   59 (74)
                      +..|++++|.|+.++.-...   +.|++..|.
T Consensus        12 v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~   43 (118)
T d1yjdc1          12 VAYDNAVNLSCKYSYNLFSREFRASLHKGLDS   43 (118)
T ss_dssp             ECBTTBEEEEEEESCCSSCSEEEEEEEESTTC
T ss_pred             EeCCCCEEEEEEEecCCCCccEEEEEEECCCC
Confidence            34566899999988765443   346655443

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=82.75  E-value=2.1  Score=25.51  Aligned_cols=24  Identities=13%  Similarity=0.336  Sum_probs=18.4

Q ss_pred             cCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         32 SNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        32 ~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      ..|++++|.|+|+|.-  .-.+.|++
T Consensus        13 kpg~sl~LsC~~SG~~~~~~~~~WvR   38 (125)
T d1op3h1          13 KAGGSLILSCGVSNFRISAHTMNWVR   38 (125)
T ss_dssp             ETTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CCCCCeEEEEeECCccCcCcccCccc
Confidence            3466799999999854  44588886

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=82.27  E-value=2.1  Score=23.61  Aligned_cols=38  Identities=11%  Similarity=0.144  Sum_probs=27.1

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCC
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDG   58 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG   58 (74)
                      +|.+..+|...  +..|+.|+|.|.+.- ..-...+.++++
T Consensus         2 KPsLsa~P~~~--V~~G~~VTl~C~~~~-~~~~f~L~keg~   39 (96)
T d1nkra1           2 KPSLLAHPGPL--VKSEETVILQCWSDV-MFEHFLLHREGM   39 (96)
T ss_dssp             CCEEEEESCSE--EETTCCEEEEEEESS-CCSEEEEEEESS
T ss_pred             CCEEEeeCCCc--cCCCCcEEEEECCCC-CCCEEEEEECCC
Confidence            68888886443  456788999999774 566777776443

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.21  E-value=1.8  Score=23.73  Aligned_cols=38  Identities=16%  Similarity=0.309  Sum_probs=25.5

Q ss_pred             cceEEEcCCCcEEecCCCCeEEEEEEcccCCCeEEEEeCCCe
Q psy11558         18 GPIFIKEPPNRIDFSNTTGAQVECTARGSPNPEIIWIRSDGT   59 (74)
Q Consensus        18 ~P~fv~~Pp~~v~~~~g~~v~L~C~A~G~P~P~I~W~~~dG~   59 (74)
                      +|.+-.+|...  +..|+.|+|.|.+. .+.-.....+ ||.
T Consensus         4 kP~Lsa~Ps~~--V~~G~~VTL~C~~~-~~~~~f~L~k-eg~   41 (96)
T d1ugna1           4 KPTLWAEPGSV--ITQGSPVTLRCQGG-QETQEYRLYR-EKK   41 (96)
T ss_dssp             CCEEEEESCSE--EETTCCEEEEEECC-TTCCCEEEEE-SSS
T ss_pred             CCEEEeECCCc--cCCCCcEEEEEeCC-CCCCEEEEEE-CCC
Confidence            67888886544  45788899999964 3444555555 554

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.07  E-value=1  Score=24.87  Aligned_cols=40  Identities=23%  Similarity=0.397  Sum_probs=24.6

Q ss_pred             ccc-eEEEcCCCcEEecCCCCeEEEEEEcccC--CCeEEEEeCCCe
Q psy11558         17 LGP-IFIKEPPNRIDFSNTTGAQVECTARGSP--NPEIIWIRSDGT   59 (74)
Q Consensus        17 ~~P-~fv~~Pp~~v~~~~g~~v~L~C~A~G~P--~P~I~W~~~dG~   59 (74)
                      .+| +|+..|.... ..+ ..+.|-|.|.|-=  .-+|+|. .||.
T Consensus         4 ~~PsV~~l~ps~~~-~~~-~~~tl~Cl~~~f~P~~i~v~W~-~~~~   46 (103)
T d1c5ch2           4 KGPSVFPLAPSSKS-TSG-GTAALGCLVKDYFPEPVTVSWN-SGAL   46 (103)
T ss_dssp             BCCEEEEECCCGGG-EET-TEEEEEEEEEEEBSSCCEEEEG-GGTB
T ss_pred             cCCEEEEECCCchh-cCC-CeEEEEEEEEeEeCCCeEEEEC-cCCC
Confidence            345 5565543332 233 3599999999953  2369996 4664

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=80.80  E-value=3  Score=24.95  Aligned_cols=24  Identities=21%  Similarity=0.489  Sum_probs=18.7

Q ss_pred             cCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         32 SNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        32 ~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      ..|++++|.|+|+|.-  .-.+.|++
T Consensus        13 kpg~sl~LsC~~SG~s~s~~~~~WvR   38 (131)
T d3c2ah1          13 KPGGSLRLTCVASGFTFSDVWLNWVR   38 (131)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CCCCCeEEEEEECCCCCcCCcccccc
Confidence            4566799999999866  34688886

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.59  E-value=1.3  Score=26.06  Aligned_cols=24  Identities=21%  Similarity=0.537  Sum_probs=18.6

Q ss_pred             cCCCCeEEEEEEcccC--CCeEEEEe
Q psy11558         32 SNTTGAQVECTARGSP--NPEIIWIR   55 (74)
Q Consensus        32 ~~g~~v~L~C~A~G~P--~P~I~W~~   55 (74)
                      ..|++++|.|+|+|..  .=.+.|++
T Consensus        13 kPg~sl~LsC~~SG~~~~~y~~~WvR   38 (116)
T d1fn4b1          13 RPSETLSLTCTVSGFSLTSFSVSWVR   38 (116)
T ss_dssp             CTTSEECCEEECCSSCTTSSEEEEEE
T ss_pred             CCCCCeEEEEEEeCcccccCccceee
Confidence            3567899999999966  33588986