Psyllid ID: psy11631

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
KKYKRKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFGLYSA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccEEEccccEEEEEcccccHHHHHHHHHHHcccccccccEEEEEccHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHcccEEEEEEccEEEEEcccHHHHHHHHccccccccccccccccHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccHHHccHHHcccccccccccccHcccccccHHHcccccccccccEEEccccEEEEEcccHHHHHHHHHHHHHHccccccccEEEEEEcHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHccEEEEEEEccEEEEEcccHHHHHHHHccccccccEEccccccccccEcccccccccccccEEcc
Coil and Loop (DISEMBL)
kkykrkkkevedesyvddpgepldedgvpvaakknvekddaavpedefgakdyraqmvlkpdhksrplwvapnghiflesfspvyrHAHDFLIAiaepvcrpehiheyKLTAYSLYAAVSVGLETHDIIEYLKRlsktsvpdGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLlkdpviqdcrlrrdtedSQTLINQADkklkapqfglysa
Flexible Loop (DISEMBL)
kkykrkkkevedesyvddpgepldedgvpvaakknvekddaavpedefgakDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPViqdcrlrrdtedsqtlinqadkklkapqfglysa
Low Complexity Region (SEG)
kkykrkkkEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFGLYSA
Disordered region (IsUnstruct)
*****************************************************************RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRL****************************
Disordered Region (DISOPRED)
***********************************************FGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQ************T*INQADKKLKAPQFGL***
Disordered Region (DISEMBL)
******************PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFGLYSA
Disordered Region (DISPRO)
******************************************VPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRD***SQTLINQADKKLKAPQFGLYS*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KKYKRKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFGLYSA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	219	2.2.26 [Sep-21-2011]
Q02870	798	DNA excision repair prote	yes	N/A	0.876	0.240	0.727	7e-83
Q7ZVV1	782	TFIIH basal transcription	yes	N/A	0.817	0.228	0.696	1e-72
Q4G005	782	TFIIH basal transcription	yes	N/A	0.840	0.235	0.668	5e-71
P49135	783	TFIIH basal transcription	yes	N/A	0.840	0.234	0.668	5e-71
Q60HG1	782	TFIIH basal transcription	N/A	N/A	0.817	0.228	0.679	1e-70
P19447	782	TFIIH basal transcription	yes	N/A	0.817	0.228	0.679	2e-70
Q1RMT1	782	TFIIH basal transcription	yes	N/A	0.840	0.235	0.663	5e-70
Q5RA62	782	TFIIH basal transcription	yes	N/A	0.817	0.228	0.674	1e-69
Q5ZKK7	788	TFIIH basal transcription	yes	N/A	0.840	0.233	0.663	2e-68
O00835	800	TFIIH basal transcription	yes	N/A	0.812	0.222	0.541	2e-50

>sp|Q02870|ERCC3_DROME DNA excision repair protein haywire OS=Drosophila melanogaster GN=hay PE=1 SV=2

 Score =  306 bits (784), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 144/198 (72%), Positives = 168/198 (84%), Gaps = 6/198 (3%)

Query: 6   KKKEVEDESYV-----DDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
           KK+  EDE++      +D  +  + +G+P AA KN E +D  +  DE+GAKDYR+QM L+
Sbjct: 19  KKRRAEDEAFTQLVDDNDSLDATESEGIPGAASKNAETNDEQINTDEYGAKDYRSQMQLR 78

Query: 61  PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
           PDH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVS
Sbjct: 79  PDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 138

Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
           VGL+THDI+EYLKRLSKTS+P+GI+EFI LCTLSYGKVKLVLKHN+YFIESP  EVLQKL
Sbjct: 139 VGLQTHDIVEYLKRLSKTSIPEGILEFIRLCTLSYGKVKLVLKHNKYFIESPHPEVLQKL 198

Query: 181 LKDPVIQDCRL-RRDTED 197
           LKDPVIQ CRL R + ED
Sbjct: 199 LKDPVIQKCRLIRSEGED 216

Probably an ATP-dependent DNA helicase involved in excision repair of DNA. May have a DNA unwinding function.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp|Q7ZVV1|ERCC3_DANRE TFIIH basal transcription factor complex helicase XPB subunit OS=Danio rerio GN=ercc3 PE=2 SV=1

 Score =  272 bits (695), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 126/181 (69%), Positives = 152/181 (83%), Gaps = 2/181 (1%)

Query: 25  EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
           ++ VP AA K V  D+++   DE+GAKDYR QM+LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 33  QEAVPAAAGKQV--DESSTKLDEYGAKDYRLQMLLKNDHSSRPLWVAPDGHIFLEAFSPV 90

Query: 85  YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
           Y++A DFL+AI+EPVCRP H HEYKLTAYSLYAAVSVGL+T DIIEYL++LSKTSVPDGI
Sbjct: 91  YKYAQDFLVAISEPVCRPTHAHEYKLTAYSLYAAVSVGLQTSDIIEYLQKLSKTSVPDGI 150

Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
           V+FI LCT+SYGKVKLVLKHNRYF+ES F +V+Q+LL+D VI+DCRLR    +   LI +
Sbjct: 151 VQFIKLCTVSYGKVKLVLKHNRYFVESAFPDVIQRLLQDTVIRDCRLRSAEGEETELITE 210

Query: 205 A 205
            
Sbjct: 211 T 211

ATP-dependent 3'-5' DNA helicase, component of the core-TFIIH basal transcription factor, involved in nucleotide excision repair (NER) of DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. Acts by opening DNA either around the RNA transcription start site or the DNA damage.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q4G005|ERCC3_RAT TFIIH basal transcription factor complex helicase XPB subunit OS=Rattus norvegicus GN=Ercc3 PE=2 SV=1

 Score =  267 bits (682), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 125/187 (66%), Positives = 152/187 (81%), Gaps = 3/187 (1%)

Query: 19  PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
           PG    ++ VP AA K V  D+++   DE+GAKDYR QM LK DH SRPLWVAP+GHIFL
Sbjct: 30  PGNE-SQEAVPSAAGKQV--DESSTKVDEYGAKDYRQQMPLKGDHTSRPLWVAPDGHIFL 86

Query: 79  ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
           E+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT
Sbjct: 87  EAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKT 146

Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
            VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES   +V+Q LL+DPVI++CRLR    ++
Sbjct: 147 GVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNAEGEA 206

Query: 199 QTLINQA 205
             LI + 
Sbjct: 207 TELITET 213

ATP-dependent 3'-5' DNA helicase, component of the core-TFIIH basal transcription factor, involved in nucleotide excision repair (NER) of DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. Acts by opening DNA either around the RNA transcription start site or the DNA damage.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P49135|ERCC3_MOUSE TFIIH basal transcription factor complex helicase XPB subunit OS=Mus musculus GN=Ercc3 PE=2 SV=1

 Score =  267 bits (682), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 125/187 (66%), Positives = 152/187 (81%), Gaps = 3/187 (1%)

Query: 19  PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
           PG    ++ VP AA K V  D+++   DE+GAKDYR QM LK DH SRPLWVAP+GHIFL
Sbjct: 30  PGNE-SQEAVPSAAGKQV--DESSTKVDEYGAKDYRQQMPLKGDHTSRPLWVAPDGHIFL 86

Query: 79  ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
           E+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT
Sbjct: 87  EAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKT 146

Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
            VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES   +V+Q LL+DPVI++CRLR    ++
Sbjct: 147 GVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNAEGEA 206

Query: 199 QTLINQA 205
             LI + 
Sbjct: 207 TELITET 213

ATP-dependent 3'-5' DNA helicase, component of the core-TFIIH basal transcription factor, involved in nucleotide excision repair (NER) of DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. Acts by opening DNA either around the RNA transcription start site or the DNA damage.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q60HG1|ERCC3_MACFA TFIIH basal transcription factor complex helicase XPB subunit OS=Macaca fascicularis GN=ERCC3 PE=2 SV=1

 Score =  265 bits (678), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 123/181 (67%), Positives = 149/181 (82%), Gaps = 2/181 (1%)

Query: 25  EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
           ++ VP AA K V  D++    DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 35  QEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPV 92

Query: 85  YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
           Y++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT VPDGI
Sbjct: 93  YKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGI 152

Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
           ++FI LCT+SYGKVKLVLKHNRYF+ES   +V+Q LL+DPVI++CRLR    ++  LI +
Sbjct: 153 MQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNSEGEATELITE 212

Query: 205 A 205
            
Sbjct: 213 T 213

ATP-dependent 3'-5' DNA helicase, component of the core-TFIIH basal transcription factor, involved in nucleotide excision repair (NER) of DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. Acts by opening DNA either around the RNA transcription start site or the DNA damage.

Macaca fascicularis (taxid: 9541)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P19447|ERCC3_HUMAN TFIIH basal transcription factor complex helicase XPB subunit OS=Homo sapiens GN=ERCC3 PE=1 SV=1

 Score =  265 bits (676), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 123/181 (67%), Positives = 149/181 (82%), Gaps = 2/181 (1%)

Query: 25  EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
           ++ VP AA K V  D++    DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 35  QEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPV 92

Query: 85  YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
           Y++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT VPDGI
Sbjct: 93  YKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGI 152

Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
           ++FI LCT+SYGKVKLVLKHNRYF+ES   +V+Q LL+DPVI++CRLR    ++  LI +
Sbjct: 153 MQFIKLCTVSYGKVKLVLKHNRYFVESCHPDVIQHLLQDPVIRECRLRNSEGEATELITE 212

Query: 205 A 205
            
Sbjct: 213 T 213

ATP-dependent 3'-5' DNA helicase, component of the core-TFIIH basal transcription factor, involved in nucleotide excision repair (NER) of DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. Acts by opening DNA either around the RNA transcription start site or the DNA damage.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q1RMT1|ERCC3_BOVIN TFIIH basal transcription factor complex helicase XPB subunit OS=Bos taurus GN=ERCC3 PE=2 SV=1

 Score =  263 bits (673), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 124/187 (66%), Positives = 150/187 (80%), Gaps = 3/187 (1%)

Query: 19  PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
           PG    E  VP AA K V  D++    DE+GAKDYR QM LK DH SRPLWVAP+GHIFL
Sbjct: 30  PGNDTQE-AVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFL 86

Query: 79  ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
           E+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI +YL++LSKT
Sbjct: 87  EAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITDYLRKLSKT 146

Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
            VP+GI++FI LCT+SYGKVKLVLKHNRYF+ES   +V+Q LL+DPVI++CRLR    ++
Sbjct: 147 GVPEGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNSEGEA 206

Query: 199 QTLINQA 205
             LI + 
Sbjct: 207 TELITET 213

ATP-dependent 3'-5' DNA helicase, component of the core-TFIIH basal transcription factor, involved in nucleotide excision repair (NER) of DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. Acts by opening DNA either around the RNA transcription start site or the DNA damage.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q5RA62|ERCC3_PONAB TFIIH basal transcription factor complex helicase XPB subunit OS=Pongo abelii GN=ERCC3 PE=2 SV=1

 Score =  262 bits (670), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 122/181 (67%), Positives = 148/181 (81%), Gaps = 2/181 (1%)

Query: 25  EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
           ++ VP AA K V  D++    DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 35  QEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPV 92

Query: 85  YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
           Y++A DFL+AIAE VCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT VPDGI
Sbjct: 93  YKYAQDFLVAIAESVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGI 152

Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
           ++FI LCT+SYGKVKLVLKHNRYF+ES   +V+Q LL+DPVI++CRLR    ++  LI +
Sbjct: 153 MQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNSEGEATELITE 212

Query: 205 A 205
            
Sbjct: 213 T 213

ATP-dependent 3'-5' DNA helicase, component of the core-TFIIH basal transcription factor, involved in nucleotide excision repair (NER) of DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. Acts by opening DNA either around the RNA transcription start site or the DNA damage.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q5ZKK7|ERCC3_CHICK TFIIH basal transcription factor complex helicase XPB subunit OS=Gallus gallus GN=ERCC3 PE=2 SV=1

 Score =  258 bits (660), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 124/187 (66%), Positives = 150/187 (80%), Gaps = 3/187 (1%)

Query: 19  PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
           PG+   ++ VP AA K VE  D+    DE+GAKDYR QM LK D+ SRPLWVAP+GHIFL
Sbjct: 27  PGKE-SQEAVPSAAGKQVE--DSGAKLDEYGAKDYRLQMPLKADNASRPLWVAPDGHIFL 83

Query: 79  ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
           E+FSPVY++A DFL+AIAEPVCRP HIHEYKLTAYSLYAAVSVGL+T DI EYL++LSKT
Sbjct: 84  EAFSPVYKYAQDFLVAIAEPVCRPTHIHEYKLTAYSLYAAVSVGLQTSDITEYLQKLSKT 143

Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
            VP+GI++FI LCT+SYGKVKLVLK NRYF+ES   +V+Q+LL+D VI+DCRLR    + 
Sbjct: 144 GVPEGIIQFIKLCTVSYGKVKLVLKRNRYFVESTHPDVIQQLLQDHVIKDCRLRNAEGEE 203

Query: 199 QTLINQA 205
             LI + 
Sbjct: 204 TELITET 210

ATP-dependent 3'-5' DNA helicase, component of the core-TFIIH basal transcription factor, involved in nucleotide excision repair (NER) of DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. Acts by opening DNA either around the RNA transcription start site or the DNA damage.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|O00835|ERCC3_DICDI TFIIH basal transcription factor complex helicase repB subunit OS=Dictyostelium discoideum GN=repB PE=2 SV=1

 Score =  198 bits (504), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 98/181 (54%), Positives = 129/181 (71%), Gaps = 3/181 (1%)

Query: 21  EPLDEDG-VPVAAKKNVEKDDAAV--PEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIF 77
           E L+E G    + KK      A +   E++    DY  + +LK D+KSRP+WV P+GHIF
Sbjct: 31  EDLEESGEFNQSIKKTTNTSSATLTSSEEKGSLLDYSKRCILKQDNKSRPIWVCPDGHIF 90

Query: 78  LESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSK 137
           LE+FS +Y+ A DFL+AIAEPVCRP++IHEY+LT YSLYAAVSVGLET+DII  L RLSK
Sbjct: 91  LETFSAIYKQASDFLVAIAEPVCRPQNIHEYQLTPYSLYAAVSVGLETNDIITVLGRLSK 150

Query: 138 TSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTED 197
            ++P  + +F+  CT SYGKVKLVL+ N+YF+ES + EVL+ LLKD  I   R++   E+
Sbjct: 151 LALPKEVEQFVRQCTQSYGKVKLVLQKNKYFVESAYPEVLEFLLKDSSIATARIKPTLEE 210

Query: 198 S 198
           S
Sbjct: 211 S 211

Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA by opening DNA around the damage, and in RNA transcription by RNA polymerase II by anchoring the CDK-activating kinase (CAK) complex to the core-TFIIH complex.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
345481459	809	PREDICTED: DNA excision repair protein h	0.977	0.264	0.707	9e-88
345481457	802	PREDICTED: DNA excision repair protein h	0.977	0.266	0.707	1e-87
350412751	804	PREDICTED: DNA excision repair protein h	0.958	0.261	0.736	7e-87
350412749	795	PREDICTED: DNA excision repair protein h	0.958	0.264	0.736	8e-87
66519335	795	PREDICTED: DNA excision repair protein h	0.963	0.265	0.731	1e-86
380015695	800	PREDICTED: DNA excision repair protein h	0.963	0.263	0.726	2e-86
380015693	795	PREDICTED: DNA excision repair protein h	0.963	0.265	0.726	2e-86
340720531	795	PREDICTED: DNA excision repair protein h	0.963	0.265	0.732	3e-86
307169923	805	DNA excision repair protein haywire [Cam	0.972	0.264	0.735	9e-86
383849852	788	PREDICTED: DNA excision repair protein h	0.968	0.269	0.716	1e-85

>gi|345481459|ref|XP_001601816.2| PREDICTED: DNA excision repair protein haywire-like isoform 1 [Nasonia vitripennis]

 Score =  328 bits (841), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 155/219 (70%), Positives = 185/219 (84%), Gaps = 5/219 (2%)

Query: 2   KYKRKKKEVEDESYVDDPG-EPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
           K+KR+K++ + +  +DD G +  + +G+P AAK +VEK D    EDE+GAKDYR+QM+LK
Sbjct: 22  KWKRRKEDHDPDYNIDDDGNDDAETEGIPDAAKNDVEKQDHGAIEDEYGAKDYRSQMILK 81

Query: 61  PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
           PD++SRPLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPEH+HEYKLTAYSLYAAVS
Sbjct: 82  PDNESRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHVHEYKLTAYSLYAAVS 141

Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
           VGL+THDIIEYLKRLSKTS+PDGI+EFI LCTLSYGK+KLVLKHN+YF+ESPF EVLQKL
Sbjct: 142 VGLQTHDIIEYLKRLSKTSIPDGIIEFIKLCTLSYGKIKLVLKHNKYFVESPFPEVLQKL 201

Query: 181 LKDPVIQDCRLRRDTEDS----QTLINQADKKLKAPQFG 215
           LKDPVIQ+CRLR+  +D+       I     K K PQFG
Sbjct: 202 LKDPVIQECRLRKTVDDTAKDKDGFITNVLAKTKVPQFG 240

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345481457|ref|XP_003424374.1| PREDICTED: DNA excision repair protein haywire-like isoform 2 [Nasonia vitripennis]

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 155/219 (70%), Positives = 185/219 (84%), Gaps = 5/219 (2%)

Query: 2   KYKRKKKEVEDESYVDDPG-EPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
           K+KR+K++ + +  +DD G +  + +G+P AAK +VEK D    EDE+GAKDYR+QM+LK
Sbjct: 15  KWKRRKEDHDPDYNIDDDGNDDAETEGIPDAAKNDVEKQDHGAIEDEYGAKDYRSQMILK 74

Query: 61  PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
           PD++SRPLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPEH+HEYKLTAYSLYAAVS
Sbjct: 75  PDNESRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHVHEYKLTAYSLYAAVS 134

Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
           VGL+THDIIEYLKRLSKTS+PDGI+EFI LCTLSYGK+KLVLKHN+YF+ESPF EVLQKL
Sbjct: 135 VGLQTHDIIEYLKRLSKTSIPDGIIEFIKLCTLSYGKIKLVLKHNKYFVESPFPEVLQKL 194

Query: 181 LKDPVIQDCRLRRDTEDS----QTLINQADKKLKAPQFG 215
           LKDPVIQ+CRLR+  +D+       I     K K PQFG
Sbjct: 195 LKDPVIQECRLRKTVDDTAKDKDGFITNVLAKTKVPQFG 233

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412751|ref|XP_003489749.1| PREDICTED: DNA excision repair protein haywire-like isoform 2 [Bombus impatiens]

 Score =  325 bits (834), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 159/216 (73%), Positives = 182/216 (84%), Gaps = 6/216 (2%)

Query: 4   KRKKKEVEDESYVDDPGEPLDED---GVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
           K KK++ + E Y DD  + LD++   G+P AAK +VEK D    EDEFGAKDYR+QM+LK
Sbjct: 24  KWKKRKEDPEEYNDD--DTLDDNETEGIPDAAKNDVEKQDDTALEDEFGAKDYRSQMILK 81

Query: 61  PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
           PD   RPLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVS
Sbjct: 82  PDCTLRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 141

Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
           VGL+THDIIEYLKRLSKTS+PDGI+EFI LCTLSYGKVKLVLKHN+YF+ESP+ EVLQKL
Sbjct: 142 VGLQTHDIIEYLKRLSKTSIPDGIIEFIKLCTLSYGKVKLVLKHNKYFVESPYPEVLQKL 201

Query: 181 LKDPVIQDCRLRRDTEDSQ-TLINQADKKLKAPQFG 215
           LKDPVIQ+CRL++  ED +  +I     K KAPQFG
Sbjct: 202 LKDPVIQECRLKKTIEDEKDEIITNVQSKTKAPQFG 237

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412749|ref|XP_003489748.1| PREDICTED: DNA excision repair protein haywire-like isoform 1 [Bombus impatiens]

 Score =  325 bits (833), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 159/216 (73%), Positives = 182/216 (84%), Gaps = 6/216 (2%)

Query: 4   KRKKKEVEDESYVDDPGEPLDED---GVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
           K KK++ + E Y DD  + LD++   G+P AAK +VEK D    EDEFGAKDYR+QM+LK
Sbjct: 15  KWKKRKEDPEEYNDD--DTLDDNETEGIPDAAKNDVEKQDDTALEDEFGAKDYRSQMILK 72

Query: 61  PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
           PD   RPLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVS
Sbjct: 73  PDCTLRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 132

Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
           VGL+THDIIEYLKRLSKTS+PDGI+EFI LCTLSYGKVKLVLKHN+YF+ESP+ EVLQKL
Sbjct: 133 VGLQTHDIIEYLKRLSKTSIPDGIIEFIKLCTLSYGKVKLVLKHNKYFVESPYPEVLQKL 192

Query: 181 LKDPVIQDCRLRRDTEDSQ-TLINQADKKLKAPQFG 215
           LKDPVIQ+CRL++  ED +  +I     K KAPQFG
Sbjct: 193 LKDPVIQECRLKKTIEDEKDEIITNVQSKTKAPQFG 228

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66519335|ref|XP_624125.1| PREDICTED: DNA excision repair protein haywire [Apis mellifera]

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 155/212 (73%), Positives = 179/212 (84%), Gaps = 1/212 (0%)

Query: 5   RKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHK 64
           +K+KE  +E   DD  +  + +G+P AAK +VEK D    EDEFGAKDYR+QM+LKPD  
Sbjct: 17  KKRKEDPEEYNEDDTLDDNETEGIPDAAKNDVEKQDDTALEDEFGAKDYRSQMILKPDCA 76

Query: 65  SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
            RPLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVSVGL+
Sbjct: 77  LRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQ 136

Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDP 184
           THDIIEYLKRLSKTS+PDGI+EFI LCTLSYGKVKLVLKHN+YF+ESP+ EVLQKLLKDP
Sbjct: 137 THDIIEYLKRLSKTSIPDGIIEFIKLCTLSYGKVKLVLKHNKYFVESPYPEVLQKLLKDP 196

Query: 185 VIQDCRLRRDTEDSQ-TLINQADKKLKAPQFG 215
           VIQ+CRL+++ ED +  +I     K K PQFG
Sbjct: 197 VIQECRLKKNVEDDKDEIITNVQNKTKTPQFG 228

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015695|ref|XP_003691833.1| PREDICTED: DNA excision repair protein haywire-like isoform 2 [Apis florea]

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 154/212 (72%), Positives = 179/212 (84%), Gaps = 1/212 (0%)

Query: 5   RKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHK 64
           +K+KE  +E   DD  +  + +G+P AAK +VEK D    EDEFGAKDYR+QM+LKPD  
Sbjct: 22  KKRKEDPEEYNEDDTLDDNETEGIPDAAKNDVEKQDDTALEDEFGAKDYRSQMILKPDCA 81

Query: 65  SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
            RPLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVSVGL+
Sbjct: 82  LRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQ 141

Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDP 184
           THDIIEYLKRLSKTS+PDGI+EFI LCTLSYGKVKLVLKHN+YF+ESP+ EVLQ+LLKDP
Sbjct: 142 THDIIEYLKRLSKTSIPDGIIEFIKLCTLSYGKVKLVLKHNKYFVESPYPEVLQRLLKDP 201

Query: 185 VIQDCRLRRDTEDSQ-TLINQADKKLKAPQFG 215
           VIQ+CRL+++ ED +  +I     K K PQFG
Sbjct: 202 VIQECRLKKNIEDDKDEIITNVQNKTKTPQFG 233

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015693|ref|XP_003691832.1| PREDICTED: DNA excision repair protein haywire-like isoform 1 [Apis florea]

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 154/212 (72%), Positives = 179/212 (84%), Gaps = 1/212 (0%)

Query: 5   RKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHK 64
           +K+KE  +E   DD  +  + +G+P AAK +VEK D    EDEFGAKDYR+QM+LKPD  
Sbjct: 17  KKRKEDPEEYNEDDTLDDNETEGIPDAAKNDVEKQDDTALEDEFGAKDYRSQMILKPDCA 76

Query: 65  SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
            RPLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVSVGL+
Sbjct: 77  LRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQ 136

Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDP 184
           THDIIEYLKRLSKTS+PDGI+EFI LCTLSYGKVKLVLKHN+YF+ESP+ EVLQ+LLKDP
Sbjct: 137 THDIIEYLKRLSKTSIPDGIIEFIKLCTLSYGKVKLVLKHNKYFVESPYPEVLQRLLKDP 196

Query: 185 VIQDCRLRRDTEDSQ-TLINQADKKLKAPQFG 215
           VIQ+CRL+++ ED +  +I     K K PQFG
Sbjct: 197 VIQECRLKKNIEDDKDEIITNVQNKTKTPQFG 228

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720531|ref|XP_003398689.1| PREDICTED: DNA excision repair protein haywire-like [Bombus terrestris]

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 159/217 (73%), Positives = 182/217 (83%), Gaps = 6/217 (2%)

Query: 4   KRKKKEVEDESYVDDPGEPLDED---GVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
           K KK++ + E Y DD  + LD++   G+P AAK +VEK D    EDEFGAKDYR+QM+LK
Sbjct: 15  KWKKRKEDPEEYNDD--DTLDDNETEGIPDAAKNDVEKQDDTALEDEFGAKDYRSQMILK 72

Query: 61  PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
            D   RPLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVS
Sbjct: 73  SDCTLRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 132

Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
           VGL+THDIIEYLKRLSKTS+PDGIVEFI LCTLSYGKVKLVLKHN+YF+ESP+ EVLQKL
Sbjct: 133 VGLQTHDIIEYLKRLSKTSIPDGIVEFIKLCTLSYGKVKLVLKHNKYFVESPYPEVLQKL 192

Query: 181 LKDPVIQDCRLRRDTEDSQ-TLINQADKKLKAPQFGL 216
           LKDPVIQ+CRL++  ED +  +I     K KAPQFG+
Sbjct: 193 LKDPVIQECRLKKSIEDEKDEIITNVQSKTKAPQFGV 229

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169923|gb|EFN62432.1| DNA excision repair protein haywire [Camponotus floridanus]

 Score =  322 bits (824), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 161/219 (73%), Positives = 179/219 (81%), Gaps = 6/219 (2%)

Query: 2   KYKRKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKP 61
           K+K++K E  D+   DD  +  + DGVP AAK +VEK D    EDEFGAKDYR QM+LKP
Sbjct: 22  KWKKRKDEY-DKYNDDDSIDSNEADGVPDAAKTDVEKQDECATEDEFGAKDYRLQMILKP 80

Query: 62  DHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSV 121
           D+ SRPLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPE IHEYKLTAYSLYAAVSV
Sbjct: 81  DNTSRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEFIHEYKLTAYSLYAAVSV 140

Query: 122 GLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLL 181
           GL+T DIIEYLKRLSKTSVPDGI+EFI LCTLSYGKVKLVLKHN+YFIESPF EVLQKLL
Sbjct: 141 GLQTEDIIEYLKRLSKTSVPDGIIEFIKLCTLSYGKVKLVLKHNKYFIESPFPEVLQKLL 200

Query: 182 KDPVIQDCRLRRD---TEDSQT--LINQADKKLKAPQFG 215
           KDPVIQ+CRLR     TED+    ++     K K PQFG
Sbjct: 201 KDPVIQECRLRTRITPTEDTDVDDIVTNVQAKSKVPQFG 239

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849852|ref|XP_003700549.1| PREDICTED: DNA excision repair protein haywire-like [Megachile rotundata]

 Score =  321 bits (822), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 154/215 (71%), Positives = 182/215 (84%), Gaps = 3/215 (1%)

Query: 2   KYKRKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKP 61
           K+K++K+++E+  + DD     +E GVP AAK +VEK D    EDEFGAKDYR+QM+LKP
Sbjct: 15  KWKKRKEDLEE--FNDDDSLDDNEAGVPDAAKNDVEKQDETALEDEFGAKDYRSQMILKP 72

Query: 62  DHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSV 121
           D  SRPLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVSV
Sbjct: 73  DCASRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSV 132

Query: 122 GLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLL 181
           GL+THDIIEYLKRLSKTS+PDGI++FI LCTLSYGKVKLVLKHN+YF+ESP+ EVLQKLL
Sbjct: 133 GLQTHDIIEYLKRLSKTSIPDGIIKFIKLCTLSYGKVKLVLKHNKYFVESPYPEVLQKLL 192

Query: 182 KDPVIQDCRLRRDTEDSQ-TLINQADKKLKAPQFG 215
           KDP IQ+CRL+++ E+ +  +I     K K  QFG
Sbjct: 193 KDPKIQECRLKKNVENEKDEIITNVQSKTKTLQFG 227

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
FB|FBgn0001179	798	hay "haywire" [Drosophila mela	0.926	0.254	0.704	1.7e-75
ZFIN|ZDB-GENE-030131-3043	843	ercc3 "excision repair cross-c	0.867	0.225	0.673	6.5e-67
RGD|1307139	782	Ercc3 "excision repair cross-c	0.881	0.246	0.658	1.3e-66
UNIPROTKB|E2RN68	779	ERCC3 "Uncharacterized protein	0.881	0.247	0.658	1.7e-66
MGI|MGI:95414	783	Ercc3 "excision repair cross-c	0.881	0.246	0.658	1.7e-66
UNIPROTKB|Q60HG1	782	ERCC3 "TFIIH basal transcripti	0.881	0.246	0.653	3.6e-66
UNIPROTKB|F1RXZ5	782	ERCC3 "Uncharacterized protein	0.881	0.246	0.647	4.5e-66
UNIPROTKB|P19447	782	ERCC3 "TFIIH basal transcripti	0.881	0.246	0.653	5.8e-66
UNIPROTKB|Q1RMT1	782	ERCC3 "TFIIH basal transcripti	0.881	0.246	0.647	1.2e-65
UNIPROTKB|Q5RA62	782	ERCC3 "TFIIH basal transcripti	0.881	0.246	0.647	2.5e-65

FB|FBgn0001179 hay "haywire" [Drosophila melanogaster (taxid:7227)]

 Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
 Identities = 148/210 (70%), Positives = 170/210 (80%)

Query:    11 EDESYVD--DPGEPLD---EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKS 65
             EDE++    D  + LD    +G+P AA KN E +D  +  DE+GAKDYR+QM L+PDH +
Sbjct:    24 EDEAFTQLVDDNDSLDATESEGIPGAASKNAETNDEQINTDEYGAKDYRSQMQLRPDHGN 83

Query:    66 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLET 125
             RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVSVGL+T
Sbjct:    84 RPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQT 143

Query:   126 HDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPV 185
             HDI+EYLKRLSKTS+P+GI+EFI LCTLSYGKVKLVLKHN+YFIESP  EVLQKLLKDPV
Sbjct:   144 HDIVEYLKRLSKTSIPEGILEFIRLCTLSYGKVKLVLKHNKYFIESPHPEVLQKLLKDPV 203

Query:   186 IQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
             IQ CRL R +E    +    D K    QFG
Sbjct:   204 IQKCRLIR-SEGEDFIQGTLDGKA-ITQFG 231

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0004386 "helicase activity" evidence=ISS

GO:0009411 "response to UV" evidence=IMP

GO:0006289 "nucleotide-excision repair" evidence=ISS

GO:0001113 "transcriptional open complex formation at RNA polymerase II promoter" evidence=ISS

GO:0043140 "ATP-dependent 3'-5' DNA helicase activity" evidence=ISS

GO:0005675 "holo TFIIH complex" evidence=ISS;IDA

GO:0001111 "promoter clearance from RNA polymerase II promoter" evidence=ISS

GO:0005634 "nucleus" evidence=IC;NAS;IDA

GO:0004003 "ATP-dependent DNA helicase activity" evidence=NAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000439 "core TFIIH complex" evidence=IEA

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IMP

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IMP

ZFIN|ZDB-GENE-030131-3043 ercc3 "excision repair cross-complementing rodent repair deficiency, complementation group 3" [Danio rerio (taxid:7955)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 132/196 (67%), Positives = 159/196 (81%)

Query:     9 EVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 68
             E EDE  +   GE   ++ VP AA K V  D+++   DE+GAKDYR QM+LK DH SRPL
Sbjct:    21 EEEDEEVIG--GE--SQEAVPAAAGKQV--DESSTKLDEYGAKDYRLQMLLKNDHSSRPL 74

Query:    69 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDI 128
             WVAP+GHIFLE+FSPVY++A DFL+AI+EPVCRP H HEYKLTAYSLYAAVSVGL+T DI
Sbjct:    75 WVAPDGHIFLEAFSPVYKYAQDFLVAISEPVCRPTHAHEYKLTAYSLYAAVSVGLQTSDI 134

Query:   129 IEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
             IEYL++LSKTSVPDGIV+FI LCT+SYGKVKLVLKHNRYF+ES F +V+Q+LL+D VI+D
Sbjct:   135 IEYLQKLSKTSVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESAFPDVIQRLLQDTVIRD 194

Query:   189 CRLRRDTEDSQTLINQ 204
             CRLR    +   LI +
Sbjct:   195 CRLRSAEGEETELITE 210

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0006289 "nucleotide-excision repair" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000439 "core TFIIH complex" evidence=IEA

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=ISS

GO:0006265 "DNA topological change" evidence=ISS

GO:0043138 "3'-5' DNA helicase activity" evidence=ISS

GO:0004672 "protein kinase activity" evidence=ISS

GO:0005675 "holo TFIIH complex" evidence=ISS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0008353 "RNA polymerase II carboxy-terminal domain kinase activity" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS

GO:0006281 "DNA repair" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

RGD|1307139 Ercc3 "excision repair cross-complementing rodent repair deficiency, complementation group 3" [Rattus norvegicus (taxid:10116)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 129/196 (65%), Positives = 157/196 (80%)

Query:     9 EVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 68
             E E+E   D PG    ++ VP AA K V  D+++   DE+GAKDYR QM LK DH SRPL
Sbjct:    20 EEEEEDEDDAPGNE-SQEAVPSAAGKQV--DESSTKVDEYGAKDYRQQMPLKGDHTSRPL 76

Query:    69 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDI 128
             WVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI
Sbjct:    77 WVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDI 136

Query:   129 IEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
              EYL++LSKT VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES   +V+Q LL+DPVI++
Sbjct:   137 TEYLRKLSKTGVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRE 196

Query:   189 CRLRRDTEDSQTLINQ 204
             CRLR    ++  LI +
Sbjct:   197 CRLRNAEGEATELITE 212

GO:0000075 "cell cycle checkpoint" evidence=IEA;ISO

GO:0000439 "core TFIIH complex" evidence=IEA

GO:0000441 "SSL2-core TFIIH complex" evidence=IDA

GO:0000717 "nucleotide-excision repair, DNA duplex unwinding" evidence=IEA;ISO

GO:0001666 "response to hypoxia" evidence=IEP

GO:0003677 "DNA binding" evidence=IEA

GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA

GO:0004672 "protein kinase activity" evidence=ISO;ISS

GO:0005524 "ATP binding" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0005675 "holo TFIIH complex" evidence=ISO;ISS

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0006265 "DNA topological change" evidence=IEA;ISO

GO:0006281 "DNA repair" evidence=ISO

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=IEA;ISO

GO:0006289 "nucleotide-excision repair" evidence=ISO

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0006917 "induction of apoptosis" evidence=IEA;ISO

GO:0006979 "response to oxidative stress" evidence=IEA;ISO

GO:0008022 "protein C-terminus binding" evidence=IEA;ISO

GO:0008094 "DNA-dependent ATPase activity" evidence=ISO;ISS

GO:0008104 "protein localization" evidence=IEA;ISO

GO:0008134 "transcription factor binding" evidence=IEA;ISO

GO:0008353 "RNA polymerase II carboxy-terminal domain kinase activity" evidence=ISO;ISS;IDA

GO:0009411 "response to UV" evidence=ISO

GO:0009650 "UV protection" evidence=IEA;ISO

GO:0016887 "ATPase activity" evidence=ISO;IDA

GO:0032564 "dATP binding" evidence=IDA

GO:0033683 "nucleotide-excision repair, DNA incision" evidence=IEA;ISO

GO:0035315 "hair cell differentiation" evidence=IEA;ISO

GO:0042277 "peptide binding" evidence=IDA

GO:0043138 "3'-5' DNA helicase activity" evidence=IEA;ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0047485 "protein N-terminus binding" evidence=IEA;ISO

UNIPROTKB|E2RN68 ERCC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 129/196 (65%), Positives = 156/196 (79%)

Query:     9 EVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 68
             E E+E   D PG    ++ VP AA K V  D++    DE+GAKDYR QM LK DH SRPL
Sbjct:    17 EDEEEDEDDVPGNE-SQEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHGSRPL 73

Query:    69 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDI 128
             WVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI
Sbjct:    74 WVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDI 133

Query:   129 IEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
              EYL++LSKT VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES   +V+Q LL+DPVI++
Sbjct:   134 TEYLRKLSKTGVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRE 193

Query:   189 CRLRRDTEDSQTLINQ 204
             CRLR    ++  LI +
Sbjct:   194 CRLRNSEGEATELITE 209

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0043138 "3'-5' DNA helicase activity" evidence=IEA

GO:0035315 "hair cell differentiation" evidence=IEA

GO:0033683 "nucleotide-excision repair, DNA incision" evidence=IEA

GO:0009650 "UV protection" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=IEA

GO:0006265 "DNA topological change" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0000717 "nucleotide-excision repair, DNA duplex unwinding" evidence=IEA

GO:0000075 "cell cycle checkpoint" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000439 "core TFIIH complex" evidence=IEA

MGI|MGI:95414 Ercc3 "excision repair cross-complementing rodent repair deficiency, complementation group 3" [Mus musculus (taxid:10090)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 129/196 (65%), Positives = 157/196 (80%)

Query:     9 EVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 68
             E E+E   D PG    ++ VP AA K V  D+++   DE+GAKDYR QM LK DH SRPL
Sbjct:    20 EEEEEDEDDIPGNE-SQEAVPSAAGKQV--DESSTKVDEYGAKDYRQQMPLKGDHTSRPL 76

Query:    69 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDI 128
             WVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI
Sbjct:    77 WVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDI 136

Query:   129 IEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
              EYL++LSKT VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES   +V+Q LL+DPVI++
Sbjct:   137 TEYLRKLSKTGVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRE 196

Query:   189 CRLRRDTEDSQTLINQ 204
             CRLR    ++  LI +
Sbjct:   197 CRLRNAEGEATELITE 212

GO:0000075 "cell cycle checkpoint" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000439 "core TFIIH complex" evidence=IEA

GO:0000441 "SSL2-core TFIIH complex" evidence=ISO

GO:0000717 "nucleotide-excision repair, DNA duplex unwinding" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISO

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=ISO

GO:0005525 "GTP binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005675 "holo TFIIH complex" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006265 "DNA topological change" evidence=ISO

GO:0006281 "DNA repair" evidence=ISO

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=ISO

GO:0006289 "nucleotide-excision repair" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=ISO

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0008104 "protein localization" evidence=ISO

GO:0008353 "RNA polymerase II carboxy-terminal domain kinase activity" evidence=ISO

GO:0009411 "response to UV" evidence=ISO

GO:0009650 "UV protection" evidence=IGI

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISO

GO:0032564 "dATP binding" evidence=ISO

GO:0033683 "nucleotide-excision repair, DNA incision" evidence=ISO

GO:0035315 "hair cell differentiation" evidence=ISO

GO:0042277 "peptide binding" evidence=ISO

GO:0043138 "3'-5' DNA helicase activity" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0047485 "protein N-terminus binding" evidence=ISO

UNIPROTKB|Q60HG1 ERCC3 "TFIIH basal transcription factor complex helicase XPB subunit" [Macaca fascicularis (taxid:9541)]

 Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
 Identities = 128/196 (65%), Positives = 156/196 (79%)

Query:     9 EVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 68
             E E++   D PG    ++ VP AA K V  D++    DE+GAKDYR QM LK DH SRPL
Sbjct:    20 EDEEDDEEDAPGND-PQEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPL 76

Query:    69 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDI 128
             WVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI
Sbjct:    77 WVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDI 136

Query:   129 IEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
              EYL++LSKT VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES   +V+Q LL+DPVI++
Sbjct:   137 TEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRE 196

Query:   189 CRLRRDTEDSQTLINQ 204
             CRLR    ++  LI +
Sbjct:   197 CRLRNSEGEATELITE 212

GO:0000075 "cell cycle checkpoint" evidence=ISS

GO:0000717 "nucleotide-excision repair, DNA duplex unwinding" evidence=ISS

GO:0005675 "holo TFIIH complex" evidence=ISS

GO:0006200 "ATP catabolic process" evidence=ISS

GO:0006265 "DNA topological change" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=ISS

GO:0006289 "nucleotide-excision repair" evidence=ISS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0006979 "response to oxidative stress" evidence=ISS

GO:0008022 "protein C-terminus binding" evidence=ISS

GO:0008104 "protein localization" evidence=ISS

GO:0009411 "response to UV" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

GO:0033683 "nucleotide-excision repair, DNA incision" evidence=ISS

GO:0035315 "hair cell differentiation" evidence=ISS

GO:0043138 "3'-5' DNA helicase activity" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0047485 "protein N-terminus binding" evidence=ISS

GO:0004672 "protein kinase activity" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS

GO:0008353 "RNA polymerase II carboxy-terminal domain kinase activity" evidence=ISS

UNIPROTKB|F1RXZ5 ERCC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 127/196 (64%), Positives = 156/196 (79%)

Query:     9 EVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 68
             E E++   D PG    ++ VP AA K V  D++    DE+GAKDYR QM LK DH SRPL
Sbjct:    20 EDEEDDEEDAPGND-SQEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHASRPL 76

Query:    69 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDI 128
             WVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI
Sbjct:    77 WVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDI 136

Query:   129 IEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
              EYL++LSKT VP+GI++FI LCT+SYGKVKLVLKHNRYF+ES   +V+Q LL+DPVI++
Sbjct:   137 TEYLRKLSKTGVPEGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRE 196

Query:   189 CRLRRDTEDSQTLINQ 204
             CRLR    ++  LI +
Sbjct:   197 CRLRNSEGEATELITE 212

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0043138 "3'-5' DNA helicase activity" evidence=IEA

GO:0035315 "hair cell differentiation" evidence=IEA

GO:0033683 "nucleotide-excision repair, DNA incision" evidence=IEA

GO:0009650 "UV protection" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=IEA

GO:0006265 "DNA topological change" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0000717 "nucleotide-excision repair, DNA duplex unwinding" evidence=IEA

GO:0000075 "cell cycle checkpoint" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000439 "core TFIIH complex" evidence=IEA

UNIPROTKB|P19447 ERCC3 "TFIIH basal transcription factor complex helicase XPB subunit" [Homo sapiens (taxid:9606)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 128/196 (65%), Positives = 156/196 (79%)

Query:     9 EVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 68
             E E++   D PG    ++ VP AA K V  D++    DE+GAKDYR QM LK DH SRPL
Sbjct:    20 EDEEDDEEDAPGND-PQEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPL 76

Query:    69 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDI 128
             WVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI
Sbjct:    77 WVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDI 136

Query:   129 IEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
              EYL++LSKT VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES   +V+Q LL+DPVI++
Sbjct:   137 TEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESCHPDVIQHLLQDPVIRE 196

Query:   189 CRLRRDTEDSQTLINQ 204
             CRLR    ++  LI +
Sbjct:   197 CRLRNSEGEATELITE 212

GO:0000439 "core TFIIH complex" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0009650 "UV protection" evidence=IEA

GO:0032564 "dATP binding" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0047485 "protein N-terminus binding" evidence=IPI

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IDA;IMP;TAS

GO:0006265 "DNA topological change" evidence=IMP

GO:0005675 "holo TFIIH complex" evidence=IDA;TAS

GO:0006917 "induction of apoptosis" evidence=IDA;IMP

GO:0043138 "3'-5' DNA helicase activity" evidence=IDA;IMP

GO:0005634 "nucleus" evidence=TAS

GO:0003677 "DNA binding" evidence=TAS

GO:0008094 "DNA-dependent ATPase activity" evidence=IDA;IMP

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=IDA;TAS

GO:0004672 "protein kinase activity" evidence=IDA

GO:0033683 "nucleotide-excision repair, DNA incision" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0006289 "nucleotide-excision repair" evidence=IMP;TAS

GO:0008104 "protein localization" evidence=IMP

GO:0006281 "DNA repair" evidence=IMP;TAS

GO:0035315 "hair cell differentiation" evidence=IMP

GO:0000717 "nucleotide-excision repair, DNA duplex unwinding" evidence=IMP

GO:0016887 "ATPase activity" evidence=IDA

GO:0000075 "cell cycle checkpoint" evidence=IMP

GO:0009411 "response to UV" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0008353 "RNA polymerase II carboxy-terminal domain kinase activity" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IDA

GO:0000718 "nucleotide-excision repair, DNA damage removal" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006360 "transcription from RNA polymerase I promoter" evidence=TAS

GO:0006361 "transcription initiation from RNA polymerase I promoter" evidence=TAS

GO:0006362 "transcription elongation from RNA polymerase I promoter" evidence=TAS

GO:0006363 "termination of RNA polymerase I transcription" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=TAS

GO:0006370 "7-methylguanosine mRNA capping" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0050434 "positive regulation of viral transcription" evidence=TAS

UNIPROTKB|Q1RMT1 ERCC3 "TFIIH basal transcription factor complex helicase XPB subunit" [Bos taurus (taxid:9913)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 127/196 (64%), Positives = 155/196 (79%)

Query:     9 EVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 68
             E E++   D PG    E  VP AA K V  D++    DE+GAKDYR QM LK DH SRPL
Sbjct:    20 EDEEDEEDDAPGNDTQE-AVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPL 76

Query:    69 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDI 128
             WVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI
Sbjct:    77 WVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDI 136

Query:   129 IEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
              +YL++LSKT VP+GI++FI LCT+SYGKVKLVLKHNRYF+ES   +V+Q LL+DPVI++
Sbjct:   137 TDYLRKLSKTGVPEGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRE 196

Query:   189 CRLRRDTEDSQTLINQ 204
             CRLR    ++  LI +
Sbjct:   197 CRLRNSEGEATELITE 212

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0006200 "ATP catabolic process" evidence=ISS

GO:0008353 "RNA polymerase II carboxy-terminal domain kinase activity" evidence=ISS

GO:0000717 "nucleotide-excision repair, DNA duplex unwinding" evidence=ISS

GO:0000075 "cell cycle checkpoint" evidence=ISS

GO:0004672 "protein kinase activity" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0043138 "3'-5' DNA helicase activity" evidence=ISS

GO:0035315 "hair cell differentiation" evidence=ISS

GO:0033683 "nucleotide-excision repair, DNA incision" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

GO:0009411 "response to UV" evidence=ISS

GO:0008104 "protein localization" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS

GO:0008022 "protein C-terminus binding" evidence=ISS

GO:0006979 "response to oxidative stress" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS

GO:0006289 "nucleotide-excision repair" evidence=ISS

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

GO:0006265 "DNA topological change" evidence=ISS

GO:0005675 "holo TFIIH complex" evidence=ISS

GO:0047485 "protein N-terminus binding" evidence=ISS

GO:0009650 "UV protection" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA

GO:0000439 "core TFIIH complex" evidence=IEA

UNIPROTKB|Q5RA62 ERCC3 "TFIIH basal transcription factor complex helicase XPB subunit" [Pongo abelii (taxid:9601)]

 Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
 Identities = 127/196 (64%), Positives = 155/196 (79%)

Query:     9 EVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 68
             E E++   D PG    ++ VP AA K V  D++    DE+GAKDYR QM LK DH SRPL
Sbjct:    20 EDEEDDEEDAPGND-PQEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPL 76

Query:    69 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDI 128
             WVAP+GHIFLE+FSPVY++A DFL+AIAE VCRP H+HEYKLTAYSLYAAVSVGL+T DI
Sbjct:    77 WVAPDGHIFLEAFSPVYKYAQDFLVAIAESVCRPTHVHEYKLTAYSLYAAVSVGLQTSDI 136

Query:   129 IEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
              EYL++LSKT VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES   +V+Q LL+DPVI++
Sbjct:   137 TEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRE 196

Query:   189 CRLRRDTEDSQTLINQ 204
             CRLR    ++  LI +
Sbjct:   197 CRLRNSEGEATELITE 212

GO:0000075 "cell cycle checkpoint" evidence=ISS

GO:0000717 "nucleotide-excision repair, DNA duplex unwinding" evidence=ISS

GO:0005675 "holo TFIIH complex" evidence=ISS

GO:0006200 "ATP catabolic process" evidence=ISS

GO:0006265 "DNA topological change" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=ISS

GO:0006289 "nucleotide-excision repair" evidence=ISS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0006979 "response to oxidative stress" evidence=ISS

GO:0008022 "protein C-terminus binding" evidence=ISS

GO:0008104 "protein localization" evidence=ISS

GO:0009411 "response to UV" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

GO:0033683 "nucleotide-excision repair, DNA incision" evidence=ISS

GO:0035315 "hair cell differentiation" evidence=ISS

GO:0043138 "3'-5' DNA helicase activity" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0047485 "protein N-terminus binding" evidence=ISS

GO:0004672 "protein kinase activity" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS

GO:0008353 "RNA polymerase II carboxy-terminal domain kinase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1RMT1	ERCC3_BOVIN	3, ., 6, ., 4, ., 1, 2	0.6631	0.8401	0.2352	yes	N/A
Q8SSK1	RAD25_ENCCU	3, ., 6, ., 4, ., 1, 2	0.5488	0.6073	0.1910	yes	N/A
Q38861	XPB1_ARATH	3, ., 6, ., 4, ., 1, 2	0.6258	0.6666	0.1903	yes	N/A
Q5ZKK7	ERCC3_CHICK	3, ., 6, ., 4, ., 1, 2	0.6631	0.8401	0.2335	yes	N/A
Q7ZVV1	ERCC3_DANRE	3, ., 6, ., 4, ., 1, 2	0.6961	0.8173	0.2289	yes	N/A
Q5RA62	ERCC3_PONAB	3, ., 6, ., 4, ., 1, 2	0.6740	0.8173	0.2289	yes	N/A
Q9FUG4	XPB2_ARATH	3, ., 6, ., 4, ., 1, 2	0.6691	0.6073	0.1736	yes	N/A
O13768	ERCC3_SCHPO	3, ., 6, ., 4, ., 1, 2	0.5217	0.8356	0.2276	yes	N/A
O00835	ERCC3_DICDI	3, ., 6, ., 4, ., 1, 2	0.5414	0.8127	0.2225	yes	N/A
Q02870	ERCC3_DROME	3, ., 6, ., 4, ., 1, 2	0.7272	0.8767	0.2406	yes	N/A
Q4G005	ERCC3_RAT	3, ., 6, ., 4, ., 1, 2	0.6684	0.8401	0.2352	yes	N/A
P49135	ERCC3_MOUSE	3, ., 6, ., 4, ., 1, 2	0.6684	0.8401	0.2349	yes	N/A
Q00578	RAD25_YEAST	3, ., 6, ., 4, ., 1, 2	0.6350	0.6210	0.1613	yes	N/A
P19447	ERCC3_HUMAN	3, ., 6, ., 4, ., 1, 2	0.6795	0.8173	0.2289	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.12	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	219
TIGR00603	732	TIGR00603, rad25, DNA repair helicase rad25	4e-96
pfam13625	128	pfam13625, Helicase_C_3, Helicase conserved C-term	2e-33

>gnl|CDD|233046 TIGR00603, rad25, DNA repair helicase rad25

 Score =  295 bits (756), Expect = 4e-96
 Identities = 115/147 (78%), Positives = 126/147 (85%)

Query: 52  DYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLT 111
           DY  Q+ LKPDH SRPLWVAP+GHIFLESFSP+Y+ A DFL+AIAEPVCRPEHIHEYKLT
Sbjct: 1   DYSKQLELKPDHGSRPLWVAPDGHIFLESFSPLYKQAQDFLVAIAEPVCRPEHIHEYKLT 60

Query: 112 AYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIES 171
           AYSLYAAVSVGLET DIIE L RLSKT +P GI+EFI LCT SYGKVKLVLKHNRYF+ES
Sbjct: 61  AYSLYAAVSVGLETEDIIEVLGRLSKTPIPKGIIEFIRLCTQSYGKVKLVLKHNRYFVES 120

Query: 172 PFAEVLQKLLKDPVIQDCRLRRDTEDS 198
           P  EVLQ+LLKDPVI  CR+    E+S
Sbjct: 121 PHPEVLQRLLKDPVIAPCRIDPTEEES 147

All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 732

>gnl|CDD|205803 pfam13625, Helicase_C_3, Helicase conserved C-terminal domain

 Score =  116 bits (292), Expect = 2e-33
 Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 5/127 (3%)

Query: 67  PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
           PL V P+  I L    P    A   L A AE    P H H Y+LT  SL  A+  GL   
Sbjct: 1   PLIVQPDLTILL-PGPPTPELAR-ALAAFAEL-ESPGHAHTYRLTPLSLRRALDAGLTAE 57

Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVI 186
           +IIE+L+R S+T VP  ++  I      +G+++L       ++ S    VL++LL D  +
Sbjct: 58  EIIEFLERHSRTPVPQSLLYLIRDVARRHGRLRLG--KAGLYLRSDDPAVLEELLADKKL 115

Query: 187 QDCRLRR 193
               LRR
Sbjct: 116 APLLLRR 122

This domain family is found in a wide variety of helicases and helicase-related proteins. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
KOG1123|consensus	776		100.0
TIGR00603	732	rad25 DNA repair helicase rad25. All proteins in t	100.0
PF13625	129	Helicase_C_3: Helicase conserved C-terminal domain	100.0
TIGR00625	448	tfb2 Transcription factor tfb2. This family is bas	98.46
PF03849	366	Tfb2: Transcription factor Tfb2; InterPro: IPR0045	97.99
KOG3471|consensus	465		97.68
COG5144	447	TFB2 RNA polymerase II transcription initiation/nu	96.77

>KOG1123|consensus

Probab=100.00  E-value=2.2e-52  Score=397.67  Aligned_cols=167  Identities=72%  Similarity=1.202  Sum_probs=158.5

Q ss_pred             CCCCcchhhhccccc-cCCCCC--cCcccccccccccccCCCCCCCCEEEcCCCeEEEeCCCCCHHHHHHHHHHhhcccc
Q psy11631         24 DEDGVPVAAKKNVEK-DDAAVP--EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVC  100 (219)
Q Consensus        24 ~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~d~~~~~~lk~d~~~~PLiVqpD~tIlLE~~~P~~~~a~dfL~~iAE~vs  100 (219)
                      +...+|.+|+++... ++....  +|+||++||| +|.||+||.+|||||.|||+||||+|+|+|++|+|||++||||+|
T Consensus        31 ~~~~i~~aa~~~~~~~~~~~~~~~~~~fg~~d~~-~l~Lk~Dh~srPLWv~~dG~IfLEsFsp~ykqA~DFLiaIaEPvc  109 (776)
T KOG1123|consen   31 KTKNIPNAAGDNDDNENDSRDKEGTDEFGAKDFR-QLPLKPDHTSRPLWVAPDGHIFLETFSPLYKQAQDFLIAIAEPVC  109 (776)
T ss_pred             hcccCcccccCcccccccccccccccccccchhh-hccCCCCCCCCceEEcCCCeEEeeecCHHHHhHhhhhhhhccccC
Confidence            567899999998863 333322  6999999998 999999999999999999999999999999999999999999999


Q ss_pred             cCCceeEEEcChhhHHHHHHcCCCHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCceEEEEeCCeEEEEcCCHHHHHHH
Q psy11631        101 RPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL  180 (219)
Q Consensus       101 rPe~iHeYRiTp~SL~~A~s~GltaedIi~~L~~~Sk~~vPq~v~~~I~~~~~ryGklrlvl~~~~~~L~s~d~~lL~~L  180 (219)
                      ||+|||+|+||+||||+|+|+|++++|||+.|+++||++||.+|+.||+.||-+||||+||+++|+|||++.++++++.|
T Consensus       110 RP~~iHEy~lTaySLYAAVSVGL~T~dIie~L~rlSKt~lp~~ii~FI~~cT~sYGKVKLVlK~nryFiEs~~~~Vlq~L  189 (776)
T KOG1123|consen  110 RPEHIHEYKLTAYSLYAAVSVGLQTEDIIEVLDRLSKTPLPESIIEFIRACTVSYGKVKLVLKHNRYFIESPHPDVLQML  189 (776)
T ss_pred             ChhhhhhhcchhhhhhhhhccccchHHHHHHHHHhccCCCCHHHHHHHHHHhhccccEEEEEeccceeecCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCcccccccc
Q psy11631        181 LKDPVIQDCRL  191 (219)
Q Consensus       181 l~d~~i~~~~l  191 (219)
                      ++||+|++|++
T Consensus       190 l~D~VI~~~r~  200 (776)
T KOG1123|consen  190 LSDPVIQPCRI  200 (776)
T ss_pred             hccccccceee
Confidence            99999999977

>TIGR00603 rad25 DNA repair helicase rad25

Probab=100.00  E-value=1.5e-50  Score=400.11  Aligned_cols=140  Identities=81%  Similarity=1.334  Sum_probs=137.4

Q ss_pred             ccccccccCCCCCCCCEEEcCCCeEEEeCCCCCHHHHHHHHHHhhcccccCCceeEEEcChhhHHHHHHcCCCHHHHHHH
Q psy11631         52 DYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEY  131 (219)
Q Consensus        52 d~~~~~~lk~d~~~~PLiVqpD~tIlLE~~~P~~~~a~dfL~~iAE~vsrPe~iHeYRiTp~SL~~A~s~GltaedIi~~  131 (219)
                      ||++.|.||+||.+||||||||||||||+|||.|++|++||++||||+|||+|||||||||+|||||+|+|+++++||++
T Consensus         1 d~~~~~~lk~dh~~~pl~v~~d~~i~lE~~~p~~~~a~~fl~~~aEp~~rp~~iHeY~lT~~sl~~A~s~g~~~~~ii~~   80 (732)
T TIGR00603         1 DYSKQLELKPDHGSRPLWVAPDGHIFLESFSPLYKQAQDFLVAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETEDIIEV   80 (732)
T ss_pred             CccccCCCCCCCCCCCEEEcCCCeEEEEeCCccHHHHHHHHHHhcccccChhheEEEeccHHHHHHHHHcCCCHHHHHHH
Confidence            79778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCChhHHHHHHHHHHhcCceEEEEeCCeEEEEcCCHHHHHHHhcCcccccccc
Q psy11631        132 LKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRL  191 (219)
Q Consensus       132 L~~~Sk~~vPq~v~~~I~~~~~ryGklrlvl~~~~~~L~s~d~~lL~~Ll~d~~i~~~~l  191 (219)
                      |++||||+||++|+.+|++||.||||+||++++++|||+|.|+.+|++|++|+.|++|++
T Consensus        81 L~~~sk~~~p~~i~~~i~~~~~~ygk~klv~~~~~~~~es~~~~~l~~l~~~~~i~~~~~  140 (732)
T TIGR00603        81 LGRLSKTPIPKGIIEFIRLCTQSYGKVKLVLKHNRYFVESPHPEVLQRLLKDPVIAPCRI  140 (732)
T ss_pred             HHHHhCCCCCHHHHHHHHHHHHhcCcEEEEEcCCceEEecCCHHHHHHHHhchhhHHhhc
Confidence            999999999999999999999999999999999999999999999999999999988775

All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13625 Helicase_C_3: Helicase conserved C-terminal domain

Probab=100.00  E-value=1.4e-38  Score=253.88  Aligned_cols=127  Identities=37%  Similarity=0.564  Sum_probs=122.0

Q ss_pred             CEEEcCCCeEEEeCCCCCHHHHHHHHHHhhcccccCCceeEEEcChhhHHHHHHcCCCHHHHHHHHHhhcCCCCChhHHH
Q psy11631         67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVE  146 (219)
Q Consensus        67 PLiVqpD~tIlLE~~~P~~~~a~dfL~~iAE~vsrPe~iHeYRiTp~SL~~A~s~GltaedIi~~L~~~Sk~~vPq~v~~  146 (219)
                      ||||||||+|++|.++|.+..+ ++|++|||+ +||++||+||||+.|||+|++.|+++++|+++|+++|+++||++|.+
T Consensus         1 PliVqpd~~I~v~~~~~~~~~~-~~L~~fae~-~s~~~~~~yrlT~~Sl~~A~~~G~~~e~i~~~L~~~S~~~lP~~v~~   78 (129)
T PF13625_consen    1 PLIVQPDFEILVEPGHPSPADA-WFLARFAEL-KSPDTMHVYRLTPASLWRAASAGLTAEEIIEFLERYSKNPLPQNVEQ   78 (129)
T ss_pred             CEEECCCCEEEEeCCCCCHHHH-HHHHHHhcc-cccCceEEEEECHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCHHHHH
Confidence            8999999999999999999877 999999999 78899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCceEEEEeCCeEEEEcCCHHHHHHHhcCcccccccccccCCC
Q psy11631        147 FINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTED  197 (219)
Q Consensus       147 ~I~~~~~ryGklrlvl~~~~~~L~s~d~~lL~~Ll~d~~i~~~~l~~~~~~  197 (219)
                      +|++|+++||++++.  .+.++|+|+|+.++++|+++|.++++.+++.+|+
T Consensus        79 ~i~~w~~~~g~v~l~--~~~~~l~~~d~~~l~~l~~~~~~~~~~~~~~~p~  127 (129)
T PF13625_consen   79 SIEDWARRYGRVRLY--KGAYLLECDDPELLDELLADPELAKLILRRIAPT  127 (129)
T ss_pred             HHHHHHHhcCCEEEe--cCeEEEEECCHHHHHHHHhChhhhhhhccccCCC
Confidence            999999999999995  5899999999999999999999999999888653

>TIGR00625 tfb2 Transcription factor tfb2

Probab=98.46  E-value=2.7e-06  Score=81.69  Aligned_cols=116  Identities=19%  Similarity=0.254  Sum_probs=95.6

Q ss_pred             CCCCCEEEcCCCeEEEeCCCCCHHHHHHHHHHhhcccccCCceeEEEcChhhHHHHHHcCCCHHHHHHHHHhhc------
Q psy11631         63 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLS------  136 (219)
Q Consensus        63 ~~~~PLiVqpD~tIlLE~~~P~~~~a~dfL~~iAE~vsrPe~iHeYRiTp~SL~~A~s~GltaedIi~~L~~~S------  136 (219)
                      ..++-+||+.++.|..-+.+|+-   ...|..|+++..|--++.+.+||..|+++|+..|+|+++||.||+.++      
T Consensus       289 ~~~g~iivEtNfrvYaYt~s~l~---~~il~lF~~~~~r~pnlvvg~iTr~Sv~~A~~~GITa~qIi~fl~~~ahp~~~~  365 (448)
T TIGR00625       289 DDLGFIIVETNYRLYAYTESPLQ---IALIALFSELLARFPNMVVGQITRESIRRALANGITAQQIIHYLRTHAHPQMRK  365 (448)
T ss_pred             CCCceEEEEecceEEEecCCHHH---HHHHHHHHHHHhcCCceEEEEecHHHHHHHHHcCCCHHHHHHHHHhcCChhhhc
Confidence            44677888888888888888883   578999999999966999999999999999999999999999999987      


Q ss_pred             C--CCCChhHHHHHHHHHHhcCceEEEEeCCeEEEEcCCHHHHHHHhcC
Q psy11631        137 K--TSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKD  183 (219)
Q Consensus       137 k--~~vPq~v~~~I~~~~~ryGklrlvl~~~~~~L~s~d~~lL~~Ll~d  183 (219)
                      +  -.||.+|.+.|+-|-....|+++.  ++.+|=.-.+....+.+.+.
T Consensus       366 ~~~~~lP~tv~dQi~lWe~e~~R~~~~--~~~l~~~f~s~~~y~~~~~y  412 (448)
T TIGR00625       366 EQTPVLPPTIVDQIRLWELERDRLRFT--EGVLYNDFLTQVDFELLLAY  412 (448)
T ss_pred             cCCCCCChHHHHHHHHHHHHhcceEee--cceeeeecCCHHHHHHHHHH
Confidence            1  259999999999999999999985  45555554555545544443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF03849 Tfb2: Transcription factor Tfb2; InterPro: IPR004598 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair

Probab=97.99  E-value=2.2e-05  Score=73.52  Aligned_cols=72  Identities=21%  Similarity=0.249  Sum_probs=64.4

Q ss_pred             CCCCCCEEEcCCCeEEEeCCCCCHHHHHHHHHHhhcccccCCceeEEEcChhhHHHHHHcCCCHHHHHHHHHhhc
Q psy11631         62 DHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLS  136 (219)
Q Consensus        62 d~~~~PLiVqpD~tIlLE~~~P~~~~a~dfL~~iAE~vsrPe~iHeYRiTp~SL~~A~s~GltaedIi~~L~~~S  136 (219)
                      ...++-+||+.+..|..-+.+|+  + -..|..|+|+..|=-+|.+-+||..|+++|+..|+||++||.||..++
T Consensus       293 ~~~~g~iivETNfrvYAYT~s~l--~-iaiL~lF~~~~~r~pnlvvg~iTr~Sv~~A~~~GIta~qIi~fL~~~a  364 (366)
T PF03849_consen  293 SNKEGFIIVETNFRVYAYTNSPL--Q-IAILSLFCELKYRFPNLVVGQITRESVRRALKNGITADQIISFLRSHA  364 (366)
T ss_pred             cccCceEEEEecceEEEecCCHH--H-HHHHHHHHHHHhcCCCeEEEEEcHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence            44566788999999998888888  3 489999999999966999999999999999999999999999999886

The core-TFIIH basal transcription factor complex has six subunits, this is the p52 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG3471|consensus

Probab=97.68  E-value=0.00014  Score=69.37  Aligned_cols=93  Identities=20%  Similarity=0.285  Sum_probs=77.6

Q ss_pred             CCEEEcCCCeEEEeCCCCCHHHHHHHHHHhhcccccCCceeEEEcChhhHHHHHHcCCCHHHHHHHHHhhcCC-------
Q psy11631         66 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT-------  138 (219)
Q Consensus        66 ~PLiVqpD~tIlLE~~~P~~~~a~dfL~~iAE~vsrPe~iHeYRiTp~SL~~A~s~GltaedIi~~L~~~Sk~-------  138 (219)
                      +-+||.-+..|..-+.+|+-   -.-|..|+|+--|=-+|-+=.||..|++.|+..|+|+++||.+|+.++.-       
T Consensus       306 G~iIVETN~riYAYT~S~lQ---iAvi~LF~~l~~rf~nlvvG~iTreSVr~Al~~GITa~QII~fLet~ahpqm~~~~~  382 (465)
T KOG3471|consen  306 GFIIVETNYRIYAYTNSPLQ---IAVIALFTELTYRFPNLVVGVITRESVRRALDNGITAEQIIHFLETHAHPQMRMLSP  382 (465)
T ss_pred             ceEEEEeccEEEEecCCHHH---HHHHHHHHHHHhhccccceeeeeHHHHHHHHhcCCcHHHHHHHHHhccCchhhhcCC
Confidence            34555556666655666663   34678899999996689999999999999999999999999999999753       


Q ss_pred             --CCChhHHHHHHHHHHhcCceEEE
Q psy11631        139 --SVPDGIVEFINLCTLSYGKVKLV  161 (219)
Q Consensus       139 --~vPq~v~~~I~~~~~ryGklrlv  161 (219)
                        -+|.+|++.|+-|-..-.++++.
T Consensus       383 ~~~LPpTv~dQIrLWElernR~~~~  407 (465)
T KOG3471|consen  383 VPCLPPTVVDQIRLWELERNRLRMT  407 (465)
T ss_pred             CCCCCchHHhHHHHHHHhhcceecc
Confidence              49999999999999999999886

>COG5144 TFB2 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB2 [Transcription / DNA replication, recombination, and repair]

Probab=96.77  E-value=0.002  Score=60.41  Aligned_cols=93  Identities=23%  Similarity=0.294  Sum_probs=76.4

Q ss_pred             CCEEEcCCCeEEEeCCCCCHHHHHHHHHHhhcccccCCceeEEEcChhhHHHHHHcCCCHHHHHHHHHhhcCC-------
Q psy11631         66 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT-------  138 (219)
Q Consensus        66 ~PLiVqpD~tIlLE~~~P~~~~a~dfL~~iAE~vsrPe~iHeYRiTp~SL~~A~s~GltaedIi~~L~~~Sk~-------  138 (219)
                      +-+||.-+..|.--+.+|+-.   .-+..||-+--|=-++-.=.||..|+++|++.|+|+++||.+|+.++.-       
T Consensus       291 gfiIVETN~kiYaYtnSplqi---avi~LF~nl~arf~Nlv~GiITreSirrAl~nGIta~QII~yLethahpqmr~~l~  367 (447)
T COG5144         291 GFIIVETNNKIYAYTNSPLQI---AVIHLFCNLTARFPNLVKGIITRESIRRALDNGITAKQIIHYLETHAHPQMRKKLE  367 (447)
T ss_pred             ceEEEEecceEEEecCChHHH---HHHHHhhhhhcccchhhhhhccHHHHHHHHhcCccHHHHHHHHHhccChhhhhcCC
Confidence            466777777777767777743   3466777777775577778999999999999999999999999999753       


Q ss_pred             CCChhHHHHHHHHHHhcCceEEE
Q psy11631        139 SVPDGIVEFINLCTLSYGKVKLV  161 (219)
Q Consensus       139 ~vPq~v~~~I~~~~~ryGklrlv  161 (219)
                      -+|+.|++.|.-|-..-.+++.+
T Consensus       368 llPPtivdQI~lWele~nRi~~~  390 (447)
T COG5144         368 LLPPTIVDQIVLWELERNRIFMV  390 (447)
T ss_pred             CCChhhhhheeeeeeccCcEEee
Confidence            26999999999999999988887

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00