Psyllid ID: psy11646

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430---
Protein Sequence
MHKATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKDYVPTIMNPFTEITGAQWSDYVSSLSESNKKDVARFISPYHHSKHPISEMTALLQSVGFNIHHCDSNTSSYSYRTVSDLRQALTSVNPFLERIPSTLQDDFMNDCIDVVFNGNLREVFPLDEQTVRFNYTQIIVFARK
Secondary Structure (PSIPRED)
cccHHHHHHcccHHHHHHHHHHHHHHHHccccccccEEEEcccccHHHHHHHcccccccccEEEEEEccHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHccccccccccccccccccccccEEEEcccccHHHHHHHHHHcccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHccccEEEEEcccccccccHHHHEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHccccHHHHHHccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccHHHHHHHHHHHHHHHHHccccccccEEEcccccccccHHHccccccccEEEEEEccccHHHHHHHHHccccccEEEEEEEHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHccccccEEEEEEcccccccccEEEEEcccccHHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEcccHHHHHHHHHHHHHcEEEEcccccccccEEEEEEEccccccccccccccccHHHHHccccccccccccccccccccEEEEcccccEccHHHHHHcccHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHcHHHEEEcccccEcccccccEEEEcEEEEEEEEcc
Coil and Loop (DISEMBL)
MHKATLYETNNSMQQLDAAKLLSQYIDQfkwtdnesvldvgcgpgnvtsklllpnlpkSVVKLVgldvspnmikhaknhhtnpklEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEklsrkpkwteytqvRTYRCLLFTGVIqvqgditkesTIKEIFShfddekvdlvvfdgapdvtglhdLDEHLQGLLLIGALNIttfllkpggtfvgkifrsrnvvclETKFQIFFENvsiakpkssrnssiESFIVcqnyrppkdyvptimnpfteitgaqWSDYVSSLSEsnkkdvarfispyhhskhpISEMTALLQSVGfnihhcdsntssysyrTVSDLRQALTSvnpfleripstlqddfmndcidvvfngnlrevfpldeqtvrFNYTQIIVFARK
Flexible Loop (DISEMBL)
MHKATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKlsrkpkwteytQVRTYRCLLFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFEnvsiakpkssrnssIESFIVCQNYRPPKDYVPTIMNPFTEITGAQWSDYVSSLSESNKKDVARFISPYHHSKHPISEMTALLQSVGFNIHHCDSNTSSYSYRTVSDLRQALTSVNPFLERIPSTLQDDFMNDCIDVVFNGNLRevfpldeqtvrfnytqiiVFARK
Low Complexity Region (SEG)
MHKATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNllmpggevllllNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKDYVPTIMNPFTEITGAQWSDYVSSLSESNKKDVARFISPYHHSKHPISEMTALLQSVGFNIHHCDSNTSSYSYRTVSDLRQALTSVNPFLERIPSTLQDDFMNDCIDVVFNGNLREVFPLDEQTVRFNYTQIIVFARK
Disordered region (IsUnstruct)
****************DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIA*********IESFIVCQNYRPPKDYVPTIMNPFTEITGAQWSDYVSSL*******VARFISPYHHSKHPISEMTALLQSVGFNIHHCDSNTSSYSYRTVSDLRQALTSVNPFLERIPSTLQDDFMNDCIDVVFNGNLREVFPLDEQTVRFNYTQIIVFA**
Disordered Region (DISOPRED)
**KATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKDYVPTIMNPFTEITGAQWSDYVSSLSESNKKDVARFISPYHHSKHPISEMTALLQSVGFNIHHCDSNTSSYSYRTVSDLRQALTSVNPFLERIPSTLQDDFMNDCIDVVFNGNLREVFPLDEQTVRFNYTQIIVFARK
Disordered Region (DISEMBL)
MHKATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIA********SIESFIVCQNYRPPKDYVPTIMNPFTEITGAQWSDYVSSLSESNKKDVARFISPYHHSKHPISEMTALLQSVGFNIHHCDSNTSSYSYRTVSDLRQALTSVNPFLERIPSTLQDDFMNDCIDVVFNGNLREVFPLDEQTVRFNYTQIIVFARK
Disordered Region (DISPRO)
*HKATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKDYVPTIMNPFTEITGAQWSDYVSSLSESNKKDVARFISPYHHSKHPISEMTALLQSVGFNIHHCDSNTSSYSYRTVSDLRQALTSVNPFLERIPSTLQDDFMNDCIDVVFNGNLREVFPLDEQTVRFNYTQIIVFARK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHKATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKDYVPTIMNPFTEITGAQWSDYVSSLSESNKKDVARFISPYHHSKHPISEMTALLQSVGFNIHHCDSNTSSYSYRTVSDLRQALTSVNPFLERIPSTLQDDFMNDCIDVVFNGNLREVFPLDEQTVRFNYTQIIVFARK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	433	2.2.26 [Sep-21-2011]
Q9UET6	329	Putative tRNA (cytidine(3	yes	N/A	0.304	0.401	0.590	1e-41
Q54VA8	270	Putative tRNA (cytidine(3	yes	N/A	0.304	0.488	0.537	2e-36
O36015	285	Putative tRNA (cytidine(3	yes	N/A	0.307	0.466	0.526	6e-36
Q22031	337	Putative tRNA (cytidine(3	yes	N/A	0.314	0.403	0.5	7e-35
Q9VEP1	302	Putative tRNA (cytidine(3	yes	N/A	0.351	0.503	0.453	2e-34
P38238	310	tRNA (cytidine(32)/guanos	yes	N/A	0.288	0.403	0.488	3e-30
Q9VDD9	320	Putative tRNA (cytidine(3	no	N/A	0.286	0.387	0.5	1e-29
Q59KF3	845	AdoMet-dependent rRNA met	N/A	N/A	0.353	0.181	0.369	1e-18
Q6BNQ8	831	AdoMet-dependent rRNA met	no	N/A	0.293	0.152	0.417	9e-18
Q9P6V8	831	AdoMet-dependent rRNA met	N/A	N/A	0.309	0.161	0.386	3e-17

>sp|Q9UET6|TRM7_HUMAN Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Homo sapiens GN=FTSJ1 PE=1 SV=2

 Score =  171 bits (433), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/132 (59%), Positives = 98/132 (74%)

Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
           GV+Q+QGDIT+ ST KEI  HF     DLVV DGAPDVTGLHD+DE++Q  LL+ ALNI 
Sbjct: 84  GVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIA 143

Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
           T +LKPGG FV KIFR R+V  L ++ Q+FF +V  AKP+SSRNSSIE+F VCQ Y PP+
Sbjct: 144 THVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPE 203

Query: 296 DYVPTIMNPFTE 307
            ++P +  P  +
Sbjct: 204 GFIPDLSKPLLD 215

Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q54VA8|TRM7_DICDI Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Dictyostelium discoideum GN=fsjA PE=3 SV=1

 Score =  154 bits (388), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/132 (53%), Positives = 99/132 (75%)

Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
           GV+Q++GDITK  T K+I SHFD    DL++ DGAPDVTGLHD+D + Q  L++ ALNIT
Sbjct: 87  GVVQIKGDITKYETSKQIISHFDGSLADLIISDGAPDVTGLHDIDFYGQSQLILSALNIT 146

Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
           T  LK GGTFV K+F+  ++  + ++ ++FFE+VS  KP SSR SS+E+FI+C+NY+PP 
Sbjct: 147 THTLKIGGTFVAKMFKGDDMSLMYSQMKLFFEHVSFVKPSSSRESSLENFILCRNYQPPL 206

Query: 296 DYVPTIMNPFTE 307
           +Y P I++P  E
Sbjct: 207 NYNPKIIDPALE 218

Probable methyltransferase.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O36015|TRM7_SCHPO Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4F10.03c PE=3 SV=1

 Score =  152 bits (383), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 70/133 (52%), Positives = 93/133 (69%)

Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
           GV  +Q DIT  +T+  I SHF +E  DLVV DGAPDVTGLHDLDE++Q  +L+ A N+ 
Sbjct: 92  GVCTLQLDITHPNTLSIILSHFGNEPADLVVSDGAPDVTGLHDLDEYIQAQILLAAFNLA 151

Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
             +LKPGG FV KIFR R+V  L ++ ++ F  VS AKP+SSR SSIESF+VC+++ PP 
Sbjct: 152 VCVLKPGGKFVAKIFRGRDVSLLYSQLRLMFRKVSCAKPRSSRASSIESFVVCEDFNPPS 211

Query: 296 DYVPTIMNPFTEI 308
           ++ P +  P   I
Sbjct: 212 NFQPDLTKPLCVI 224

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q22031|TRM7_CAEEL Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Caenorhabditis elegans GN=R74.7 PE=3 SV=3

 Score =  148 bits (374), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 68/136 (50%), Positives = 94/136 (69%)

Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
           GVIQ+QGDIT   T  ++  HF  EK D+V+ DGAPDVTG+H LDE +Q  L++ A NIT
Sbjct: 85  GVIQLQGDITSVDTANQVIKHFSGEKSDIVICDGAPDVTGIHSLDEFMQAELILAAFNIT 144

Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
           + +LK GG F+ KIFRSRN   L  + + +F+ V +AKP+SSR SS E+F++C +Y PP+
Sbjct: 145 SHVLKEGGNFLAKIFRSRNSSLLYAQMKKYFKKVYLAKPRSSRQSSCEAFVLCLDYSPPE 204

Query: 296 DYVPTIMNPFTEITGA 311
            +VPT+     + T A
Sbjct: 205 GFVPTMGKTSLDATDA 220

Probable methyltransferase.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9VEP1|TRM71_DROME Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 1 OS=Drosophila melanogaster GN=CG5220 PE=2 SV=1

 Score =  147 bits (371), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 106/161 (65%), Gaps = 9/161 (5%)

Query: 176 GVIQVQGDITKESTIKEIFSHFD-DEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNI 234
           G++Q+QGDITK+ST + I  HF  +EK  LVV DGAPDVTG+H++DE++Q  LL+ AL+I
Sbjct: 91  GILQLQGDITKQSTAEAIIGHFGGNEKAQLVVCDGAPDVTGVHEMDEYMQHQLLVAALSI 150

Query: 235 TTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPP 294
            T +L+ GGTFV KIF+      L ++ QIFF+   I KP SSR SSIE+F+VC ++  P
Sbjct: 151 ATCVLETGGTFVAKIFKGNATSLLSSQMQIFFKKFDIYKPPSSRPSSIEAFVVCSDFCLP 210

Query: 295 KDYVPTIMNPFTEITGAQWSDYVSSLSESNKKDVARFISPY 335
           + Y+P ++NP          D +  L++    +V R + P+
Sbjct: 211 EGYIPQVINP--------ARDDIRLLAQKTGSEVNRRLVPF 243

Probable methyltransferase.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P38238|TRM7_YEAST tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRM7 PE=1 SV=1

 Score =  133 bits (334), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/125 (48%), Positives = 83/125 (66%)

Query: 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITT 236
           V  +Q DIT   T+  I   F +EK D V  DGAPDVTGLHDLDE++Q  L++ AL +T 
Sbjct: 93  VTTLQADITHPKTLARILKLFGNEKADFVCSDGAPDVTGLHDLDEYVQQQLIMSALQLTA 152

Query: 237 FLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKD 296
            +LK GGTFV KIFR R++  L ++    F+ +  AKP+SSR +S+E+FIVC  Y PP +
Sbjct: 153 CILKKGGTFVAKIFRGRDIDMLYSQLGYLFDKIVCAKPRSSRGTSLEAFIVCLGYNPPSN 212

Query: 297 YVPTI 301
           + P +
Sbjct: 213 WTPKL 217

Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9VDD9|TRM72_DROME Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 2 OS=Drosophila melanogaster GN=CG7009 PE=3 SV=1

 Score =  131 bits (329), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/124 (50%), Positives = 87/124 (70%)

Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
           GV Q++ DI+KEST + I   F  EK  +VV DGAPD TG+HD D ++QG LL+ AL+I+
Sbjct: 90  GVKQLRADISKESTAEAIIEFFGGEKAQIVVSDGAPDSTGMHDFDSYVQGELLLSALSIS 149

Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
           TF+L+ GG+FV KI+R+     L T+ + FF+NV + KP +SRNSSIE+F+V + +  P 
Sbjct: 150 TFILEEGGSFVSKIYRADRTSRLYTQLKRFFKNVCVFKPSASRNSSIEAFVVAREFCLPD 209

Query: 296 DYVP 299
            Y P
Sbjct: 210 GYKP 213

Probable methyltransferase.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q59KF3|SPB1_CANAL AdoMet-dependent rRNA methyltransferase SPB1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SPB1 PE=3 SV=1

 Score = 94.7 bits (234), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITT 236
           VI  Q DIT E     +  H    K D V+ DGAP+V      D   Q  L + AL +  
Sbjct: 88  VITFQSDITTEDCRSRLRGHMKTWKADTVLHDGAPNVGLGWVQDAFTQSQLTLQALKLAV 147

Query: 237 FLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKD 296
             L  GGTFV KIFRSR+   L   FQ  FE V   KP +SRN S E F+VC+ ++ PK 
Sbjct: 148 ENLTAGGTFVTKIFRSRDYNNLMWVFQQLFEKVEATKPPASRNVSAEIFVVCKGFKAPKK 207

Query: 297 YVPTIMNP---FTEITGAQWSDYVSSLSESNKKDVARFISPYHHS 338
             P +++P   F E+ G          +ES + + A+  +P   S
Sbjct: 208 LDPRLLDPKEVFEELGGG---------NESKQNNEAKIFNPEKFS 243

Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q6BNQ8|SPB1_DEBHA AdoMet-dependent rRNA methyltransferase SPB1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SPB1 PE=3 SV=2

 Score = 92.0 bits (227), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 53/127 (41%), Positives = 67/127 (52%)

Query: 178 IQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTF 237
           I  Q DIT E    ++  H    K D V+ DGAP+V      D   Q  L + AL +   
Sbjct: 89  ITFQSDITTEDCRSQLRGHMKTWKADTVLHDGAPNVGLGWVQDAFTQSHLTLQALKLAVE 148

Query: 238 LLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKDY 297
            L  GGTFV KIFRSR+   L   FQ  FE V   KP +SRN S E F+VC+ Y+ PK  
Sbjct: 149 NLNTGGTFVTKIFRSRDYNNLMWVFQQLFEKVEATKPPASRNVSAEIFVVCKGYKSPKKM 208

Query: 298 VPTIMNP 304
            P +++P
Sbjct: 209 DPRLLDP 215

Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9P6V8|SPB1_NEUCR AdoMet-dependent rRNA methyltransferase spb1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=spb1 PE=3 SV=2

 Score = 90.1 bits (222), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 72/137 (52%), Gaps = 3/137 (2%)

Query: 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITT 236
           VI  Q DIT E     I SH    K D+V+ DGAP+V      D + Q  L + +L + T
Sbjct: 86  VITFQSDITTEKCRATIRSHLKTWKADVVLHDGAPNVGTAWVQDSYNQAELALHSLKLAT 145

Query: 237 FLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKD 296
             L  GGTFV K+FRS++   L       F  V   KP SSRN S E F+VC+ ++ PK 
Sbjct: 146 EFLIEGGTFVTKVFRSKDYNSLLWVCNQLFAKVEATKPPSSRNVSAEIFVVCRGFKAPKR 205

Query: 297 YVPTIMNP---FTEITG 310
             P +++P   F ++ G
Sbjct: 206 IDPKLLDPRSVFEDVAG 222

Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	433
384488193	290	hypothetical protein RO3G_05078 [Rhizopu	0.307	0.458	0.639	3e-46
390335448	449	PREDICTED: putative ribosomal RNA methyl	0.304	0.293	0.659	1e-44
291222138	361	PREDICTED: FtsJ homolog 1-like [Saccoglo	0.304	0.365	0.643	5e-44
239790974	307	ACYPI009233 [Acyrthosiphon pisum]	0.346	0.488	0.559	7e-44
440804458	261	ribosomal RNA large subunit methyltransf	0.304	0.505	0.621	8e-44
156368067	316	predicted protein [Nematostella vectensi	0.300	0.411	0.638	1e-43
47214710	297	unnamed protein product [Tetraodon nigro	0.300	0.437	0.638	2e-43
62857467	335	FtsJ RNA methyltransferase homolog 1 [Xe	0.300	0.388	0.638	3e-43
405971894	348	Putative ribosomal RNA methyltransferase	0.304	0.379	0.636	4e-43
348523421	309	PREDICTED: putative ribosomal RNA methyl	0.300	0.420	0.623	5e-43

>gi|384488193|gb|EIE80373.1| hypothetical protein RO3G_05078 [Rhizopus delemar RA 99-880]

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 85/133 (63%), Positives = 111/133 (83%)

Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
           GVIQ+QGDITKEST ++I S+FD E  D+V+ DGAPDVTGLHD+DE++Q  LL+ ALNIT
Sbjct: 91  GVIQLQGDITKESTAEKIISYFDGELADIVICDGAPDVTGLHDMDEYIQAQLLLAALNIT 150

Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
           T +L+PGGTFV KIFR +++  L ++ +IFF  V+ +KP+SSRNSSIE+FIVCQNY+PPK
Sbjct: 151 THVLRPGGTFVAKIFRGKDITLLYSQLKIFFPTVTCSKPRSSRNSSIEAFIVCQNYQPPK 210

Query: 296 DYVPTIMNPFTEI 308
           DYVPT+ NP  ++
Sbjct: 211 DYVPTMANPLLDL 223

Source: Rhizopus delemar RA 99-880

Species: Rhizopus delemar

Genus: Rhizopus

Family: Rhizopodaceae

Order: Mucorales

Superkingdom: Eukaryota

>gi|390335448|ref|XP_798087.2| PREDICTED: putative ribosomal RNA methyltransferase 1-like [Strongylocentrotus purpuratus]

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/132 (65%), Positives = 104/132 (78%)

Query: 174 FTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALN 233
             GVIQ+QGDITKEST  EI SHF+ EK DLVV DGAPDVTGLHD+DE++Q  LL+ ALN
Sbjct: 71  LPGVIQLQGDITKESTANEIVSHFEGEKADLVVCDGAPDVTGLHDIDEYIQAQLLLAALN 130

Query: 234 ITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRP 293
           ITT +LKP GTFV KIFR ++V  L ++ +IFF  V+IAKP+SSRNSSIE+F+VCQ Y P
Sbjct: 131 ITTHVLKPQGTFVAKIFRGKDVTLLYSQLKIFFPQVTIAKPRSSRNSSIEAFVVCQRYAP 190

Query: 294 PKDYVPTIMNPF 305
           P  YVP + NP 
Sbjct: 191 PVGYVPNMSNPL 202

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|291222138|ref|XP_002731075.1| PREDICTED: FtsJ homolog 1-like [Saccoglossus kowalevskii]

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 85/132 (64%), Positives = 104/132 (78%)

Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
           GVIQ+QGDITK ST  EI  HF+ E+ DLVV DGAPDVTGLHDLDE++Q  LL+ ALNIT
Sbjct: 87  GVIQIQGDITKVSTAMEIIGHFEGEQADLVVCDGAPDVTGLHDLDEYIQAQLLLAALNIT 146

Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
           T +LKPGGTFV KIFR ++V  L ++ +IFF  V+IAKP+SSRNSSIE+F+VC+NY PP 
Sbjct: 147 THVLKPGGTFVAKIFRGKDVTLLYSQLKIFFPKVTIAKPRSSRNSSIEAFVVCENYSPPV 206

Query: 296 DYVPTIMNPFTE 307
            Y P + NP  +
Sbjct: 207 GYKPNMSNPLLD 218

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|239790974|dbj|BAH72013.1| ACYPI009233 [Acyrthosiphon pisum]

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 90/161 (55%), Positives = 116/161 (72%), Gaps = 11/161 (6%)

Query: 176 GVIQVQGDITKESTIKEIFSHFDDEK-VDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNI 234
           GV+Q++GDITKEST  EI + FD  + VDLVVFDGAPDVTGLHDLDE++Q  LL+ ALNI
Sbjct: 88  GVVQLKGDITKESTANEILAQFDGGRLVDLVVFDGAPDVTGLHDLDEYVQAQLLLAALNI 147

Query: 235 TTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPP 294
           TT+LLKPGGTF+GKIFR ++   L ++ +IFF +V +AKP SSRNSSIESF+VC+++R P
Sbjct: 148 TTYLLKPGGTFIGKIFRGKDSSLLISQLEIFFGDVVVAKPCSSRNSSIESFVVCRDFRLP 207

Query: 295 KDYVPTIMNPFTEITGAQWSDYVSSLSESNKKDVARFISPY 335
             Y PT+ NP        W          ++ DV R I+P+
Sbjct: 208 DGYTPTMANPLMTNDSRSW----------DEMDVHRVITPF 238

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|440804458|gb|ELR25335.1| ribosomal RNA large subunit methyltransferase J, putative [Acanthamoeba castellanii str. Neff]

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 82/132 (62%), Positives = 109/132 (82%)

Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
           GVIQ++GDITK ST++EI  HF+ +  DLVV DGAPDVTG+HD+DE++Q  L++ ALNIT
Sbjct: 91  GVIQIKGDITKLSTVQEIIGHFEGKLADLVVCDGAPDVTGMHDMDEYVQAQLILAALNIT 150

Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
           T +LKPGGTF+ KIFR ++V  L  + ++FF +V+IAKPKSSRNSSIESF++CQ+Y PP+
Sbjct: 151 THVLKPGGTFIAKIFRGKDVTLLYEQLKVFFPSVTIAKPKSSRNSSIESFVLCQHYTPPQ 210

Query: 296 DYVPTIMNPFTE 307
            YVPTI+NP  +
Sbjct: 211 GYVPTIINPMLD 222

Source: Acanthamoeba castellanii str. Neff

Species: Acanthamoeba castellanii

Genus: Acanthamoeba

Superkingdom: Eukaryota

>gi|156368067|ref|XP_001627518.1| predicted protein [Nematostella vectensis] gi|156214430|gb|EDO35418.1| predicted protein [Nematostella vectensis]

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/130 (63%), Positives = 102/130 (78%)

Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
           GVIQ+QGDITK ST  +I SHF+ E  DLV+ DGAPDVTGLHD+DE++QG LL+ ALNIT
Sbjct: 90  GVIQIQGDITKTSTANQIISHFEGEHADLVICDGAPDVTGLHDIDEYIQGQLLLAALNIT 149

Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
           T +LKPGG FV KIFR ++V  L  + ++FF  V+I KP+SSRNSSIESF+VCQ Y PP+
Sbjct: 150 THVLKPGGNFVAKIFRGKDVSLLYAQLKVFFPTVTICKPRSSRNSSIESFVVCQGYAPPQ 209

Query: 296 DYVPTIMNPF 305
            Y PT+ NP 
Sbjct: 210 GYKPTMSNPL 219

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|47214710|emb|CAG01063.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/130 (63%), Positives = 103/130 (79%)

Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
           GV Q+QGDITK +T +EI  HF+ +  DLVV DGAPDVTGLHD+DE++Q  LL+ ALNIT
Sbjct: 87  GVTQIQGDITKVTTAQEIIRHFEGQPADLVVCDGAPDVTGLHDVDEYIQAQLLLAALNIT 146

Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
           T +LKPGGTFV KIFR ++V  L ++ +IFF  V+ AKP+SSRNSSIE+F+VCQNY PPK
Sbjct: 147 THVLKPGGTFVAKIFRGKDVTLLYSQLKIFFTGVTCAKPRSSRNSSIEAFVVCQNYSPPK 206

Query: 296 DYVPTIMNPF 305
            YVP + NP 
Sbjct: 207 GYVPNMSNPL 216

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|62857467|ref|NP_001016817.1| FtsJ RNA methyltransferase homolog 1 [Xenopus (Silurana) tropicalis] gi|89273969|emb|CAJ81745.1| FtsJ homolog 1 (E. coli) [Xenopus (Silurana) tropicalis]

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 83/130 (63%), Positives = 102/130 (78%)

Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
           GVIQ+QGDITK ST  EI  HF+ +  DLVV DGAPDVTGLHD+DE++Q  LL+ ALNIT
Sbjct: 88  GVIQIQGDITKVSTAHEIIRHFEGQPADLVVCDGAPDVTGLHDIDEYIQAQLLLAALNIT 147

Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
           T +L+ GGTFV KIFR ++V  L ++ QIFF  V+ AKP+SSRNSSIE+F+VCQ YRPP+
Sbjct: 148 THVLRDGGTFVAKIFRGKDVTLLYSQLQIFFREVTCAKPRSSRNSSIEAFVVCQGYRPPE 207

Query: 296 DYVPTIMNPF 305
            YVP + NP 
Sbjct: 208 GYVPNMSNPL 217

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|405971894|gb|EKC36697.1| Putative ribosomal RNA methyltransferase 1 [Crassostrea gigas]

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 84/132 (63%), Positives = 106/132 (80%)

Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
           GVIQ+QGDITK+ST +EI SHF+ EK DLVV DGAPDVTGLHD+DE++Q  LL+ ALNIT
Sbjct: 88  GVIQLQGDITKKSTAQEIISHFEGEKADLVVCDGAPDVTGLHDIDEYIQAQLLLAALNIT 147

Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
           T +L+ GGTFV KIFR ++V  L ++ +IFF  V+I KP+SSRNSSIE+F+VCQNY PP 
Sbjct: 148 THVLRTGGTFVAKIFRGKDVTLLYSQLRIFFPLVAIFKPRSSRNSSIEAFVVCQNYSPPA 207

Query: 296 DYVPTIMNPFTE 307
            Y+P + NP  +
Sbjct: 208 GYIPNMSNPLLD 219

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|348523421|ref|XP_003449222.1| PREDICTED: putative ribosomal RNA methyltransferase 1-like isoform 2 [Oreochromis niloticus]

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 81/130 (62%), Positives = 102/130 (78%)

Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
           GV Q+QGDITK ST +EI  HF+ +  DLVV DGAPDVTGLHD+DE++Q  LL+ ALNIT
Sbjct: 83  GVTQIQGDITKVSTAQEIIRHFEGQPADLVVCDGAPDVTGLHDVDEYIQAQLLLAALNIT 142

Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
           T +LKPGGTFV KIFR ++V  L ++ ++FF  V+  KP+SSRNSSIE+F+VCQNY PPK
Sbjct: 143 THVLKPGGTFVAKIFRGKDVTLLYSQLKLFFNGVTCTKPRSSRNSSIEAFVVCQNYSPPK 202

Query: 296 DYVPTIMNPF 305
            Y+P + NP 
Sbjct: 203 GYIPNMSNPL 212

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	433
FB|FBgn0028841	297	jhamt "juvenile hormone acid m	0.378	0.552	0.355	1.2e-41
ZFIN|ZDB-GENE-041114-83	323	ftsj1 "FtsJ homolog 1 (E. coli	0.304	0.408	0.628	1.7e-41
UNIPROTKB|F1MSM7	307	F1MSM7 "Uncharacterized protei	0.304	0.429	0.568	3.6e-40
RGD|1561061	326	Ftsj1 "FtsJ RNA methyltransfer	0.297	0.395	0.620	4.8e-39
UNIPROTKB|Q9UET6	329	FTSJ1 "Putative tRNA (cytidine	0.304	0.401	0.590	9.9e-39
UNIPROTKB|E2REZ9	329	FTSJ1 "Uncharacterized protein	0.304	0.401	0.583	1.3e-38
UNIPROTKB|A0JNB8	307	FTSJ1 "Uncharacterized protein	0.304	0.429	0.568	1.1e-37
DICTYBASE|DDB_G0280483	270	fsjA "rRNA (uridine-2'-O-)-met	0.304	0.488	0.537	9.2e-36
WB|WBGene00011281	337	R74.7 [Caenorhabditis elegans	0.314	0.403	0.5	1.5e-35
UNIPROTKB|G3MZ13	327	G3MZ13 "Uncharacterized protei	0.300	0.397	0.553	1.9e-35

FB|FBgn0028841 jhamt "juvenile hormone acid methyltransferase" [Drosophila melanogaster (taxid:7227)]

 Score = 271 (100.5 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
 Identities = 60/169 (35%), Positives = 93/169 (55%)

Query:     1 MHKATLYETNNSMQQLDAAKLLSQYIDQFKW-TDNE-SVLDVGCGPGNVTSKLLLPNLPK 58
             M++A+LY+  N +Q+ DA  +L ++    +W +D E ++LDVG G GNV    + P LP 
Sbjct:     1 MNQASLYQHANQVQRHDAKLILDEFASTMQWRSDGEDALLDVGSGSGNVLMDFVKPLLPI 60

Query:    59 SVVKLVGLDVSPNMIKHAKNHHTNP-KLEFVVANIADQNLESIFLAKFNKIFSFYCLHWV 117
                +LVG D+S  M+ +A  H+    +  F V +I  + L      +F+ + SFYCLHWV
Sbjct:    61 RG-QLVGTDISSQMVHYASKHYQREERTRFQVLDIGCERLPEELSGRFDHVTSFYCLHWV 119

Query:   118 QDQRQAISNIYNXXXXXXXX-XXXXNAFNPIYDLYEKLSRKPKWTEYTQ 165
             Q+ + A+ NIYN              A NP+Y++Y+ L    KW+ Y Q
Sbjct:   120 QNLKGALGNIYNLLKPEGGDCLLAFLASNPVYEVYKILKTNDKWSTYMQ 168

GO:0006718 "juvenile hormone biosynthetic process" evidence=IMP;IDA

GO:0035049 "juvenile hormone acid methyltransferase activity" evidence=IDA

GO:0019010 "farnesoic acid O-methyltransferase activity" evidence=IDA

ZFIN|ZDB-GENE-041114-83 ftsj1 "FtsJ homolog 1 (E. coli)" [Danio rerio (taxid:7955)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 83/132 (62%), Positives = 102/132 (77%)

Query:   176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
             GV Q+QGDITK ST +EI  HF+ E  DLVV DGAPDVTGLHD+DE++Q  LL+ ALNIT
Sbjct:    87 GVTQIQGDITKISTAEEIIRHFEGESADLVVCDGAPDVTGLHDVDEYIQAQLLLAALNIT 146

Query:   236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
             T +LKPGG FV KIFR ++V  L ++ +IFF  V+ AKP SSRNSSIE+F+VCQNY PP+
Sbjct:   147 THVLKPGGNFVAKIFRGKDVTLLYSQLKIFFSFVTCAKPPSSRNSSIEAFVVCQNYSPPE 206

Query:   296 DYVPTIMNPFTE 307
              YVP + NP  +
Sbjct:   207 GYVPNMSNPLLD 218

GO:0032259 "methylation" evidence=IEA

GO:0001510 "RNA methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|F1MSM7 F1MSM7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 407 (148.3 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
 Identities = 75/132 (56%), Positives = 100/132 (75%)

Query:   176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
             GV+Q+QGDIT+ ST KEI  HF+D   DLVV DGAPDVTGLHD+DE++Q  LL+ ALNI 
Sbjct:    84 GVVQIQGDITQLSTAKEIVQHFEDCPADLVVCDGAPDVTGLHDVDEYMQSQLLLAALNIA 143

Query:   236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
             T +LKPGG FV KIFR R+V  + ++ ++FF +V  AKP+SSRN+SIE+F VC+ Y PP+
Sbjct:   144 THVLKPGGCFVAKIFRGRDVTLVYSQLRVFFSSVLCAKPRSSRNASIEAFAVCKGYDPPE 203

Query:   296 DYVPTIMNPFTE 307
              ++P +  P  +
Sbjct:   204 GFLPDLSKPLLD 215

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0001510 "RNA methylation" evidence=IEA

RGD|1561061 Ftsj1 "FtsJ RNA methyltransferase homolog 1 (E. coli)" [Rattus norvegicus (taxid:10116)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 80/129 (62%), Positives = 98/129 (75%)

Query:   176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
             GVIQ+QGDIT+ ST KEI  HF+    DLVV DGAPDVTGLHD+DE++Q  LL+ ALNI 
Sbjct:    84 GVIQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIA 143

Query:   236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
             T +LKPGG FV KIFR R+V  L ++ +IFF +V  AKPKSSRNSSIE+F VCQ Y PP+
Sbjct:   144 THVLKPGGCFVAKIFRGRDVTLLYSQLRIFFSSVLCAKPKSSRNSSIEAFAVCQGYDPPE 203

Query:   296 DYVPTIMNP 304
              ++P +  P
Sbjct:   204 GFIPDLTRP 212

GO:0001510 "RNA methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q9UET6 FTSJ1 "Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 78/132 (59%), Positives = 98/132 (74%)

Query:   176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
             GV+Q+QGDIT+ ST KEI  HF     DLVV DGAPDVTGLHD+DE++Q  LL+ ALNI 
Sbjct:    84 GVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIA 143

Query:   236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
             T +LKPGG FV KIFR R+V  L ++ Q+FF +V  AKP+SSRNSSIE+F VCQ Y PP+
Sbjct:   144 THVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPE 203

Query:   296 DYVPTIMNPFTE 307
              ++P +  P  +
Sbjct:   204 GFIPDLSKPLLD 215

GO:0001510 "RNA methylation" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E2REZ9 FTSJ1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 77/132 (58%), Positives = 99/132 (75%)

Query:   176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
             GV+Q+QGDIT+ ST KEI  HF+    DLVV DGAPDVTGLHD+DE++Q  LL+ ALNI 
Sbjct:    84 GVLQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIA 143

Query:   236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
             T +LKPGG FV KIFR R+V  + ++ ++FF NV  AKP+SSRNSSIE+F VCQ Y PP+
Sbjct:   144 THVLKPGGCFVAKIFRGRDVTLIYSQLRVFFSNVLCAKPRSSRNSSIEAFAVCQGYDPPE 203

Query:   296 DYVPTIMNPFTE 307
              ++P +  P  +
Sbjct:   204 GFLPDLTKPLLD 215

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0001510 "RNA methylation" evidence=IEA

UNIPROTKB|A0JNB8 FTSJ1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 75/132 (56%), Positives = 99/132 (75%)

Query:   176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
             GV+Q+QGDIT+ ST KEI  HF+    DLVV DGAPDVTGLHD+DE++Q  LL+ ALNI 
Sbjct:    84 GVLQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIA 143

Query:   236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
             T +LKPGG FV KIFR R+V  + ++ ++FF +V  AKP+SSRNSSIE+F VC+ Y PP+
Sbjct:   144 THVLKPGGCFVAKIFRGRDVTLIYSQLRVFFSSVLCAKPRSSRNSSIEAFAVCKGYDPPE 203

Query:   296 DYVPTIMNPFTE 307
              ++P +  P  +
Sbjct:   204 GFLPDLTKPLLD 215

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0001510 "RNA methylation" evidence=IEA

DICTYBASE|DDB_G0280483 fsjA "rRNA (uridine-2'-O-)-methyltransferase" [Dictyostelium discoideum (taxid:44689)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 71/132 (53%), Positives = 99/132 (75%)

Query:   176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
             GV+Q++GDITK  T K+I SHFD    DL++ DGAPDVTGLHD+D + Q  L++ ALNIT
Sbjct:    87 GVVQIKGDITKYETSKQIISHFDGSLADLIISDGAPDVTGLHDIDFYGQSQLILSALNIT 146

Query:   236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
             T  LK GGTFV K+F+  ++  + ++ ++FFE+VS  KP SSR SS+E+FI+C+NY+PP 
Sbjct:   147 THTLKIGGTFVAKMFKGDDMSLMYSQMKLFFEHVSFVKPSSSRESSLENFILCRNYQPPL 206

Query:   296 DYVPTIMNPFTE 307
             +Y P I++P  E
Sbjct:   207 NYNPKIIDPALE 218

GO:0032259 "methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0001510 "RNA methylation" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

WB|WBGene00011281 R74.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 363 (132.8 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
 Identities = 68/136 (50%), Positives = 94/136 (69%)

Query:   176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
             GVIQ+QGDIT   T  ++  HF  EK D+V+ DGAPDVTG+H LDE +Q  L++ A NIT
Sbjct:    85 GVIQLQGDITSVDTANQVIKHFSGEKSDIVICDGAPDVTGIHSLDEFMQAELILAAFNIT 144

Query:   236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
             + +LK GG F+ KIFRSRN   L  + + +F+ V +AKP+SSR SS E+F++C +Y PP+
Sbjct:   145 SHVLKEGGNFLAKIFRSRNSSLLYAQMKKYFKKVYLAKPRSSRQSSCEAFVLCLDYSPPE 204

Query:   296 DYVPTIMNPFTEITGA 311
              +VPT+     + T A
Sbjct:   205 GFVPTMGKTSLDATDA 220

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0001510 "RNA methylation" evidence=IEA

UNIPROTKB|G3MZ13 G3MZ13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 73/132 (55%), Positives = 96/132 (72%)

Query:   176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
             GV+Q+QGDIT+ ST KEI  HF+D   DLVV DGAPDVTGLH   E++Q  LL+ ALN+ 
Sbjct:    84 GVLQIQGDITQLSTAKEIIQHFEDCPTDLVVCDGAPDVTGLHV--EYMQAQLLLAALNLA 141

Query:   236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
               +LKPGG FVGKIFR R+V  + ++ ++FF  V  AKP+SSRNSSIE+F VC+ Y PP+
Sbjct:   142 MHVLKPGGCFVGKIFRGRDVTLIYSQLRVFFSRVLCAKPRSSRNSSIEAFAVCKGYNPPE 201

Query:   296 DYVPTIMNPFTE 307
              ++P +  P  +
Sbjct:   202 GFLPDLTKPLLD 213

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0001510 "RNA methylation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O36015	TRM7_SCHPO	2, ., 1, ., 1, ., -	0.5263	0.3071	0.4666	yes	N/A
Q54VA8	TRM7_DICDI	2, ., 1, ., 1, ., -	0.5378	0.3048	0.4888	yes	N/A
Q9UET6	TRM7_HUMAN	2, ., 1, ., 1, ., -	0.5909	0.3048	0.4012	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.1.1.166	LOW CONFIDENCE prediction!
3rd Layer	2.1.1	0.691
4th Layer	2.1.1.144	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	433
pfam01728	177	pfam01728, FtsJ, FtsJ-like methyltransferase	3e-31
COG0293	205	COG0293, FtsJ, 23S rRNA methylase [Translation, ri	1e-29
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	2e-19
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	3e-17
TIGR00438	188	TIGR00438, rrmJ, cell division protein FtsJ	5e-16
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	7e-16
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	2e-14
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	5e-14
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	1e-13
PRK11188	209	PRK11188, rrmJ, 23S rRNA methyltransferase J; Prov	5e-12
COG4106	257	COG4106, Tam, Trans-aconitate methyltransferase [G	2e-11
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	2e-11
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	4e-11
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	6e-11
PRK01683	258	PRK01683, PRK01683, trans-aconitate 2-methyltransf	1e-10
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	2e-10
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	6e-10
PRK10258	251	PRK10258, PRK10258, biotin biosynthesis protein Bi	2e-09
TIGR01934	223	TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone	3e-07
PRK14103	255	PRK14103, PRK14103, trans-aconitate 2-methyltransf	6e-06
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	2e-05
pfam01209	233	pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf	2e-05
TIGR01983	224	TIGR01983, UbiG, ubiquinone biosynthesis O-methylt	6e-05
PLN02336	475	PLN02336, PLN02336, phosphoethanolamine N-methyltr	2e-04
COG2227	243	COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m	6e-04
TIGR00740	239	TIGR00740, TIGR00740, tRNA (cmo5U34)-methyltransfe	8e-04
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	0.001
COG2230	283	COG2230, Cfa, Cyclopropane fatty acid synthase and	0.002
PRK11036	255	PRK11036, PRK11036, putative S-adenosyl-L-methioni	0.003
PRK11088	272	PRK11088, rrmA, 23S rRNA methyltransferase A; Prov	0.004

>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase

 Score =  117 bits (296), Expect = 3e-31
 Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 2/119 (1%)

Query: 174 FTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALN 233
             GV  ++GDIT   T++++       KVDLV+ DGAP+V+G+ + D  +   L++ AL 
Sbjct: 60  IQGVYFLRGDITDPETLEKLRELLP-GKVDLVLSDGAPNVSGIENTDSFISLQLVLAALL 118

Query: 234 ITTFLLKPGGTFVGKIFRSRNV-VCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNY 291
           +   +L+PGG FV K+F+     V L  K +  FE V I KP +SR SS E ++VC  +
Sbjct: 119 LALEVLRPGGNFVVKVFKGFEFSVELLEKLKKGFEKVGIFKPPASRPSSSEEYLVCLGF 177

This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesised that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping. Length = 177

>gnl|CDD|223370 COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

 Score =  113 bits (286), Expect = 1e-29
 Identities = 42/123 (34%), Positives = 65/123 (52%)

Query: 173 LFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGAL 232
              GVI +QGDIT E T++++        VD+V+ D AP+ +G   +D      L   AL
Sbjct: 83  PIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELAL 142

Query: 233 NITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYR 292
                +LKPGG+FV K+F+  +   L    +  F  V I KPK+SR  S E ++V + ++
Sbjct: 143 EFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFKPKASRKRSREIYLVAKGFK 202

Query: 293 PPK 295
             +
Sbjct: 203 GKE 205

Length = 205

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 82.3 bits (204), Expect = 2e-19
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 10/102 (9%)

Query: 38  LDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL 97
           LDVGCG G +  + L       V    G+D+SP M+  A+        +FVV +  D   
Sbjct: 1   LDVGCGTGLLA-EALARRGGARVT---GVDLSPEMLALARKR---APRKFVVGDAEDLPF 53

Query: 98  ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
                  F+ + S   LH + D  +A+  I  +L PGG++++
Sbjct: 54  PD---ESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 80.4 bits (199), Expect = 3e-17
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 8/136 (5%)

Query: 4   ATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKL 63
           A  Y+ +  +Q+  A +LL   + +       SVLD+GCG G +T  LL         + 
Sbjct: 6   AKTYDRHAKIQREMAKRLL-ALLKEKGIFIPASVLDIGCGTGYLTRALLKRF---PQAEF 61

Query: 64  VGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQA 123
           +  D+S  M+  AK    +  ++F+  +     L     + F+ I S   L W  D  QA
Sbjct: 62  IANDISAGMLAQAK-TKLSENVQFICGDAEKLPL---EDSSFDLIVSNLALQWCDDLSQA 117

Query: 124 ISNIYNLLMPGGEVLL 139
           +S +  +L PGG +  
Sbjct: 118 LSELARVLKPGGLLAF 133

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

>gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ

 Score = 75.6 bits (186), Expect = 5e-16
 Identities = 42/117 (35%), Positives = 69/117 (58%), Gaps = 2/117 (1%)

Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLI-GALNI 234
            V  ++GD T E  + +I     D+KVD+V+ D AP+++G  D+D HL+ + L+  AL+I
Sbjct: 73  NVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDID-HLRSIDLVELALDI 131

Query: 235 TTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNY 291
              +LKP G FV K+F+   +     + +  FE V + KP++SR  S E +IV + +
Sbjct: 132 AKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAKRF 188

Methylates the 23S rRNA. Previously known as cell division protein ftsJ.// Trusted cutoff too high? [SS 10/1/04] [Protein synthesis, tRNA and rRNA base modification]. Length = 188

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 72.4 bits (178), Expect = 7e-16
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 4/99 (4%)

Query: 38  LDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQN 96
           LD+GCG G +   LL        ++  G+D+SP  ++ A         L+ V   +   +
Sbjct: 1   LDIGCGTGTLLRALLEALPG---LEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLD 57

Query: 97  LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGG 135
              +    F+ + +   LH + D R  + N+  LL PGG
Sbjct: 58  AIDLDPGSFDVVVASNVLHHLADPRAVLRNLRRLLKPGG 96

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 70.2 bits (172), Expect = 2e-14
 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%)

Query: 32  TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN---PKLEFV 88
                VLD+GCG G +T  L     P +  ++VG+D+S   I+ AK +        +EF+
Sbjct: 2   KSGIKVLDLGCGTGYLTFILAEKLGPGA--EVVGIDISEEAIEKAKENAKKLGYENVEFI 59

Query: 89  VANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140
             +I +     +    F+ + S   L+ + D  + +  I  +L PGG +++ 
Sbjct: 60  QGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVS 111

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 67.3 bits (165), Expect = 5e-14
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 14/115 (12%)

Query: 33  DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN---PKLEFVV 89
               VLD+GCG G++ +  L    P +  ++ G+D+SP M++ A+ +      P++ FV 
Sbjct: 1   PGARVLDIGCGTGSL-AIELARLFPGA--RVTGVDLSPEMLELARENAKLALGPRITFVQ 57

Query: 90  ANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF 144
            +  D       L  F+ +F       + +    +  + +LL PGG   L+LNA 
Sbjct: 58  GDAPD---ALDLLEGFDAVFIGGGGGDLLE---LLDALASLLKPGG--RLVLNAV 104

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 66.3 bits (162), Expect = 1e-13
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 10/107 (9%)

Query: 37  VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN---PKLEFVVANIA 93
           VLD+GCG G +    L       V    G+D+SP  ++ A+          +E +  +  
Sbjct: 2   VLDLGCGTGALAL-ALASGPGARVT---GVDISPVALELARKAAAALLADNVEVLKGDAE 57

Query: 94  DQNLESIFLAKFNKIFS-FYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
           +   E+     F+ I S     H V+D  + +     LL PGG ++L
Sbjct: 58  ELPPEAD--ESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|183025 PRK11188, rrmJ, 23S rRNA methyltransferase J; Provisional

 Score = 64.4 bits (157), Expect = 5e-12
 Identities = 38/117 (32%), Positives = 59/117 (50%)

Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
           GV  +QGD   E  +K +     D KV +V+ D AP+++G   +D      L+  AL++ 
Sbjct: 92  GVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMC 151

Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYR 292
             +L PGG+FV K+F+         + +  F  V + KP SSR  S E +IV    +
Sbjct: 152 RDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRK 208

Length = 209

>gnl|CDD|226591 COG4106, Tam, Trans-aconitate methyltransferase [General function prediction only]

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 37  VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN 96
           V+D+GCGPGN T +LL    P +V  + G+D SP M+  A      P   F  A++    
Sbjct: 34  VVDLGCGPGNST-ELLARRWPDAV--ITGIDSSPAMLAKAAQR--LPDATFEEADLRTWK 88

Query: 97  LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGG 135
            E       + +F+   L W+ D  + +  + + L PGG
Sbjct: 89  PE----QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGG 123

Length = 257

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 13/112 (11%)

Query: 34  NESVLDVGCGPGNVTSKLLLPNLPKSV--VKLVGLDVSPNMIKHAKNHH---TNPKLEFV 88
            + VLDV CG G++   L      KSV   ++VGLD+S +M++ A+          +EFV
Sbjct: 52  GDKVLDVACGTGDMALLLA-----KSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFV 106

Query: 89  VANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140
           V +  +          F+ +   + L  V D  +A+  +Y +L PGG +L+L
Sbjct: 107 VGDAENLPFPD---NSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVL 155

Length = 238

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 7/108 (6%)

Query: 35  ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN--PKLEFVVANI 92
           + VLDVGCGPGN      L        ++VG+D S  M+  AK       P +EFV  + 
Sbjct: 21  DRVLDVGCGPGNDA--RELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA 78

Query: 93  ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140
                       F+ + S   L  ++D  +A++ I  +L PGG V++L
Sbjct: 79  DGLPFPD---GSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVL 123

Length = 241

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 58.5 bits (142), Expect = 6e-11
 Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 12/104 (11%)

Query: 37  VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT--NPKLEFVVANIAD 94
           +LD+GCG G V   L           + G+D+S   ++ AK       PK+ FVVA+  D
Sbjct: 1   ILDLGCGTGRVLRAL----ARAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVADARD 56

Query: 95  QNLESIFLAKFNKIFSFYCLH---WVQDQRQAISNIYNLLMPGG 135
             L       F+ +            +  R  +     LL PGG
Sbjct: 57  --LPFE-EGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|234970 PRK01683, PRK01683, trans-aconitate 2-methyltransferase; Provisional

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 22/125 (17%)

Query: 18  AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK 77
           A  LL++   +    +   V+D+GCGPGN T +LL+   P +  ++ G+D SP M+  A+
Sbjct: 20  ARDLLARVPLE----NPRYVVDLGCGPGNST-ELLVERWPAA--RITGIDSSPAMLAEAR 72

Query: 78  NHHTNPKLEFVVANIA----DQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMP 133
           +    P  +FV A+IA     Q L+ IF    N         W+ D  +    + +LL P
Sbjct: 73  SRL--PDCQFVEADIASWQPPQALDLIFA---NASL-----QWLPDHLELFPRLVSLLAP 122

Query: 134 GGEVL 138
           GG VL
Sbjct: 123 GG-VL 126

Length = 258

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 61.1 bits (145), Expect = 2e-10
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 7/136 (5%)

Query: 37  VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKL---EFVVANIA 93
           VLD+GCG G +    LL  L      +VG+D+SP M+  A+       L   +FVVA+  
Sbjct: 52  VLDIGCGTGRLA---LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADAL 108

Query: 94  DQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEK 153
              L     A F+ + S   LH +    +A+  +  +L PGG ++L     + + +    
Sbjct: 109 GGVLPFEDSASFDLVISLLVLHLL-PPAKALRELLRVLKPGGRLVLSDLLRDGLLEGRLA 167

Query: 154 LSRKPKWTEYTQVRTY 169
                      +    
Sbjct: 168 ALLGFGDPVLERGDIL 183

Length = 257

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 57.5 bits (139), Expect = 6e-10
 Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 21/125 (16%)

Query: 17  DAAKLLSQYIDQF--KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIK 74
              + L++ + +   +      VLD+GCG G     +LL  L +    + G+D SP  + 
Sbjct: 4   QRERFLARLLARLLPRLKPGGRVLDIGCGTG-----ILLRLLRERGFDVTGVDPSPAAVL 58

Query: 75  HAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPG 134
                              D    ++   K++ I +F  L  + D    +  +  LL PG
Sbjct: 59  IFSLF--------------DAPDPAVLAGKYDLITAFEVLEHLPDPPALLQQLRELLKPG 104

Query: 135 GEVLL 139
           G +L+
Sbjct: 105 GVLLI 109

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 18/136 (13%)

Query: 4   ATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKL 63
           A  YE +  +Q+  A  LL+    +        VLD GCGPG ++          S V  
Sbjct: 17  AAHYEQHAELQRQSADALLAMLPQR----KFTHVLDAGCGPGWMS---RYWRERGSQV-- 67

Query: 64  VGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFL--AKFNKIFSFYCLHWVQDQR 121
             LD+SP M+  A+         ++  +I     ES+ L  A F+  +S   + W  +  
Sbjct: 68  TALDLSPPMLAQARQKDAADH--YLAGDI-----ESLPLATATFDLAWSNLAVQWCGNLS 120

Query: 122 QAISNIYNLLMPGGEV 137
            A+  +Y ++ PGG V
Sbjct: 121 TALRELYRVVRPGGVV 136

Length = 251

>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 12/127 (9%)

Query: 34  NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNP-KLEFVVANI 92
            + VLDV CG G++  +L          K+ G+D S  M++ AK     P  +EF+ A+ 
Sbjct: 40  GQKVLDVACGTGDLAIELAK--SAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADA 97

Query: 93  ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL------LNAFNP 146
                E      F+ +   + L  V D ++A+  +Y +L PGG +++L            
Sbjct: 98  EALPFED---NSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKK 154

Query: 147 IYDLYEK 153
            Y  Y K
Sbjct: 155 FYKFYLK 161

This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223

>gnl|CDD|184509 PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 13/128 (10%)

Query: 37  VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN 96
           V+D+GCGPGN+T + L    P +V++   LD SP M+  A+       ++    ++ D  
Sbjct: 33  VVDLGCGPGNLT-RYLARRWPGAVIE--ALDSSPEMVAAARERG----VDARTGDVRDWK 85

Query: 97  LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL--NAFNPIYDLYEKL 154
            +       + + S   L WV +    +    + L PG  + + +  N   P +     L
Sbjct: 86  PKP----DTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRAL 141

Query: 155 SRKPKWTE 162
           +R+  W +
Sbjct: 142 ARREPWAK 149

Length = 255

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 45.5 bits (109), Expect = 2e-05
 Identities = 34/146 (23%), Positives = 54/146 (36%), Gaps = 40/146 (27%)

Query: 30  KWTD---NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN---- 82
           KW      + VLD+ CG G++   + L        ++VGLD S  M+   +    +    
Sbjct: 45  KWLGVRPGDKVLDLACGTGDLA--IALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS 102

Query: 83  PKLEFVVAN-----IADQNLESIFLAKFNKIFSF------YCLHWVQDQRQAISNIYNLL 131
             +EFV  +       D               SF      + L  V D  +A+  +Y +L
Sbjct: 103 GNVEFVQGDAEALPFPDN--------------SFDAVTIAFGLRNVPDIDKALREMYRVL 148

Query: 132 MPGGEVLLL------LNAFNPIYDLY 151
            PGG +++L             YD Y
Sbjct: 149 KPGGRLVILEFSKPTNPPLKKAYDFY 174

Length = 239

>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 14/127 (11%)

Query: 36  SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNP---KLEFVVANI 92
             LDV  G G+ T  L   +   S  K+VGLD++ NM+K  +          +EF+  N 
Sbjct: 50  KFLDVAGGTGDWTFGLS--DSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFLQGNA 107

Query: 93  ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL------LNAFNP 146
            +   E      F+ +   + L    D  + +   + +L PGG V+ L          + 
Sbjct: 108 EELPFED---DSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVVCLEFSKPENPLLSQ 164

Query: 147 IYDLYEK 153
            Y+LY K
Sbjct: 165 AYELYFK 171

Length = 233

>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 10/107 (9%)

Query: 36  SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT-NP--KLEFVVANI 92
            VLDVGCG G     LL   L +    + G+D S   I+ AK H   +P  K+E+   ++
Sbjct: 48  RVLDVGCGGG-----LLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSV 102

Query: 93  ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
            D  L       F+ +     L  V D +  I     LL PGG +  
Sbjct: 103 ED--LAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFF 147

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224

>gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 20/150 (13%)

Query: 24  QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNP 83
           +++D+      + VLDVGCG G     +         V +VG+D+S NMI  A       
Sbjct: 257 EFVDKLDLKPGQKVLDVGCGIGGGDFYM----AENFDVHVVGIDLSVNMISFALERAIGR 312

Query: 84  K--LEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141
           K  +EF VA+   +         F+ I+S   +  +QD+     + +  L PGG+VL   
Sbjct: 313 KCSVEFEVADCTKKTYPD---NSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVL--- 366

Query: 142 NAFNPIYDLYEKLSRKP--KWTEYTQVRTY 169
                I D Y +    P  ++ EY + R Y
Sbjct: 367 -----ISD-YCRSPGTPSPEFAEYIKQRGY 390

Length = 475

>gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 14/108 (12%)

Query: 36  SVLDVGCGPGNVTSKLLLP--NLPKSVVKLVGLDVSPNMIKHAKNH--HTNPKLEFVVAN 91
            VLDVGCG G     L  P   L  SV    G+D S   I+ AK H   +   +++  A 
Sbjct: 62  RVLDVGCGGGI----LSEPLARLGASV---TGIDASEKPIEVAKLHALESGVNIDYRQAT 114

Query: 92  IADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
           + D         +F+ +     L  V D    +     L+ PGG + L
Sbjct: 115 VEDLASAG---GQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFL 159

Length = 243

>gnl|CDD|129823 TIGR00740, TIGR00740, tRNA (cmo5U34)-methyltransferase

 Score = 40.6 bits (95), Expect = 8e-04
 Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 12/109 (11%)

Query: 37  VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH----HTNPKLEFVVANI 92
           V D+GC  G  T      N+ +  VK++G+D S  M++  + H    H+   +E +  +I
Sbjct: 57  VYDLGCSRGAATLSAR-RNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI 115

Query: 93  ADQNLESIFLAKFNKIFSFYCLHWVQ-DQRQA-ISNIYNLLMPGGEVLL 139
               +++  +   N     + L ++  + R A ++ IY  L P G ++L
Sbjct: 116 RHVEIKNASMVILN-----FTLQFLPPEDRIALLTKIYEGLNPNGVLVL 159

This tRNA methyltransferase is involved, together with cmoB, in preparing the uridine-5-oxyacetic acid (cmo5U) at position 34 [Unknown function, Enzymes of unknown specificity]. Length = 239

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 33/134 (24%)

Query: 33  DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK-----NHHTNPKLEF 87
             + VL+VG G G V          K+  K+VG+D++P  ++ AK     N+  N  +E 
Sbjct: 23  KGDRVLEVGTGSGIVAI-----VAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEV 77

Query: 88  V----VANIADQNLESIFLAKFN----------KIFSFYCLHWV--QDQRQAIS----NI 127
           +             + I    FN          +   +        +D R+ I      +
Sbjct: 78  IRSDLFEPFRGDKFDVIL---FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEV 134

Query: 128 YNLLMPGGEVLLLL 141
              L PGG +LLL 
Sbjct: 135 GRYLKPGGRILLLQ 148

Length = 188

>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 25/163 (15%)

Query: 6   LYETNNSMQQLDAAKL--LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKL 63
            +E  +    L+ A+   L   +++       ++LD+GCG G     L +    +  V +
Sbjct: 45  YFEDPDMT--LEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGG----LAIYAAEEYGVTV 98

Query: 64  VGLDVSPNMIKHAKNH----HTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQD 119
           VG+ +S   + +A+           +E  + +  D      F   F++I S      V  
Sbjct: 99  VGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD------FEEPFDRIVSVGMFEHVGK 152

Query: 120 QRQA--ISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKW 160
           +        +Y LL PGG   +LL++   I    ++  R P +
Sbjct: 153 ENYDDFFKKVYALLKPGG--RMLLHS---ITGPDQEFRRFPDF 190

Length = 283

>gnl|CDD|182918 PRK11036, PRK11036, putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 30/130 (23%)

Query: 17  DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKL---VGL-DVSPNM 72
           D  +LL++   +        VLD G G G    KL          +L   V L D+S  M
Sbjct: 33  DLDRLLAELPPR-----PLRVLDAGGGEGQTAIKL---------AELGHQVILCDLSAEM 78

Query: 73  IKHAKNHHTN----PKLEFV---VANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAIS 125
           I+ AK           ++F+     +IA      + L  F+ +     L WV D +  + 
Sbjct: 79  IQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV-----LEWVADPKSVLQ 133

Query: 126 NIYNLLMPGG 135
            ++++L PGG
Sbjct: 134 TLWSVLRPGG 143

Length = 255

>gnl|CDD|236841 PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional

 Score = 38.7 bits (91), Expect = 0.004
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 11/87 (12%)

Query: 19  AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN 78
           A LL++ +D+       ++LD+GCG G  T  L       + ++L GLD+S   IK+A  
Sbjct: 75  ANLLAERLDE----KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAK 130

Query: 79  HHTNPKLEFVVAN-----IADQNLESI 100
            +  P++ F VA+      ADQ+L++I
Sbjct: 131 RY--PQVTFCVASSHRLPFADQSLDAI 155

Length = 272

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	433
KOG1099|consensus	294		100.0
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	99.96
KOG4589|consensus	232		99.96
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.93
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	99.91
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.87
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.83
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.81
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.81
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.79
KOG1098|consensus	780		99.79
TIGR00438	188	rrmJ cell division protein FtsJ.	99.79
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.73
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.7
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.69
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.65
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.64
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.63
KOG1540|consensus	296		99.63
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.63
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.63
PLN02244	340	tocopherol O-methyltransferase	99.63
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.63
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.62
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.6
PLN02490	340	MPBQ/MSBQ methyltransferase	99.58
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.58
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.57
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.57
PRK05785	226	hypothetical protein; Provisional	99.57
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.56
PRK11207	197	tellurite resistance protein TehB; Provisional	99.56
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.56
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.55
PRK08317	241	hypothetical protein; Provisional	99.55
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.55
PLN02336	475	phosphoethanolamine N-methyltransferase	99.54
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.53
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.53
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.51
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.49
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.49
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.48
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.48
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.48
KOG1270|consensus	282		99.48
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.47
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.46
KOG4300|consensus	252		99.46
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.45
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.45
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.45
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.45
PRK06922	677	hypothetical protein; Provisional	99.44
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.43
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.43
PRK12335	287	tellurite resistance protein TehB; Provisional	99.43
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.42
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.41
PRK06202	232	hypothetical protein; Provisional	99.41
KOG2361|consensus	264		99.41
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.41
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.4
PLN03075	296	nicotianamine synthase; Provisional	99.4
PRK04266	226	fibrillarin; Provisional	99.39
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.38
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.38
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.37
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.37
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.37
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.36
KOG3674|consensus	696		99.36
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.35
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.35
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.35
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.32
PRK14967	223	putative methyltransferase; Provisional	99.32
PLN02336	475	phosphoethanolamine N-methyltransferase	99.31
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.31
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.29
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.29
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.29
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.27
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.26
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.25
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.25
KOG3010|consensus	261		99.25
PRK07402	196	precorrin-6B methylase; Provisional	99.25
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.23
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.23
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.22
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.21
KOG1541|consensus	270		99.21
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.21
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.21
TIGR03438	301	probable methyltransferase. This model represents	99.2
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.19
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.19
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.18
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.18
KOG1271|consensus	227		99.18
COG4123	248	Predicted O-methyltransferase [General function pr	99.18
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.18
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.17
KOG3673|consensus	845		99.17
PRK14968	188	putative methyltransferase; Provisional	99.16
PTZ00146	293	fibrillarin; Provisional	99.16
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.16
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.16
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.16
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.16
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.15
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.15
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.13
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.13
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.12
PRK00811	283	spermidine synthase; Provisional	99.11
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.11
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.1
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.1
KOG1975|consensus	389		99.1
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.09
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.07
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.07
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.06
COG2890	280	HemK Methylase of polypeptide chain release factor	99.05
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.05
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.05
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.03
PHA03411	279	putative methyltransferase; Provisional	99.02
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.02
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.02
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.0
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.0
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.0
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.98
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.98
PRK04457	262	spermidine synthase; Provisional	98.97
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.93
KOG2940|consensus	325		98.93
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.93
PHA03412	241	putative methyltransferase; Provisional	98.93
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.91
KOG2904|consensus	328		98.86
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.86
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.85
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.84
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.8
KOG2899|consensus	288		98.8
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.78
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.78
KOG3191|consensus	209		98.78
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.77
PRK01581	374	speE spermidine synthase; Validated	98.77
PLN02672	1082	methionine S-methyltransferase	98.76
COG4122	219	Predicted O-methyltransferase [General function pr	98.76
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.75
PLN02366	308	spermidine synthase	98.75
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.74
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.74
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.72
PLN02476	278	O-methyltransferase	98.72
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.7
PRK03612	521	spermidine synthase; Provisional	98.7
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.69
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.68
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.65
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.64
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.64
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.57
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.57
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.56
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.55
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.54
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.53
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.53
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.52
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.48
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.46
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.45
KOG1500|consensus	517		98.45
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.42
KOG1499|consensus	346		98.42
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.41
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.39
KOG1661|consensus	237		98.39
PRK04148	134	hypothetical protein; Provisional	98.39
KOG3045|consensus	325		98.38
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.34
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.33
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.27
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.27
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.26
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.24
PLN02823	336	spermine synthase	98.24
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.21
KOG3420|consensus	185		98.21
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.21
KOG0820|consensus	315		98.2
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.2
COG2521	287	Predicted archaeal methyltransferase [General func	98.19
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.18
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.18
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.16
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.16
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.14
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.09
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.09
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.08
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.07
KOG1331|consensus	293		98.05
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.03
PRK00536	262	speE spermidine synthase; Provisional	98.03
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.02
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.99
KOG2915|consensus	314		97.99
COG0742	187	N6-adenine-specific methylase [DNA replication, re	97.98
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.98
KOG3178|consensus	342		97.98
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.94
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.93
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.92
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.92
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.92
COG2265	432	TrmA SAM-dependent methyltransferases related to t	97.91
KOG1709|consensus	271		97.84
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.84
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.83
KOG3987|consensus	288		97.78
KOG1663|consensus	237		97.73
KOG1269|consensus	364		97.72
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.72
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.71
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.7
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	97.66
PF14314	675	Methyltrans_Mon: Virus-capping methyltransferase	97.65
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.63
KOG3201|consensus	201		97.62
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.61
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.6
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.57
KOG4589|consensus	232		97.57
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.5
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.49
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	97.45
COG3897	218	Predicted methyltransferase [General function pred	97.43
COG2520	341	Predicted methyltransferase [General function pred	97.42
PF13679	141	Methyltransf_32: Methyltransferase domain	97.4
KOG1122|consensus	460		97.35
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.34
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.3
PLN02668	386	indole-3-acetate carboxyl methyltransferase	97.3
COG4076	252	Predicted RNA methylase [General function predicti	97.28
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.26
KOG2352|consensus	482		97.21
KOG2187|consensus	534		97.17
KOG2198|consensus	375		97.04
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.01
KOG1098|consensus	780		96.99
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.9
COG4798	238	Predicted methyltransferase [General function pred	96.9
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	96.8
KOG3115|consensus	249		96.69
KOG2730|consensus	263		96.54
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.5
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	96.48
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	96.39
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	96.36
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.35
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	96.29
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.08
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	96.03
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	96.01
PF06460	299	NSP13: Coronavirus NSP13; InterPro: IPR009461 This	95.96
KOG2793|consensus	248		95.95
PRK10742	250	putative methyltransferase; Provisional	95.88
KOG1099|consensus	294		95.86
KOG1596|consensus	317		95.76
KOG4058|consensus	199		95.5
COG0286	489	HsdM Type I restriction-modification system methyl	95.46
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	95.46
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	94.85
COG3129	292	Predicted SAM-dependent methyltransferase [General	94.81
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	94.78
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	94.73
KOG2798|consensus	369		94.62
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	94.59
KOG2539|consensus	491		94.28
KOG0024|consensus	354		94.07
TIGR00438	188	rrmJ cell division protein FtsJ.	93.92
COG2384	226	Predicted SAM-dependent methyltransferase [General	93.9
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	93.6
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	93.43
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	93.41
PRK11524	284	putative methyltransferase; Provisional	93.4
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	93.4
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	93.05
COG4301	321	Uncharacterized conserved protein [Function unknow	92.74
KOG1562|consensus	337		92.68
PHA01634	156	hypothetical protein	92.61
KOG2920|consensus	282		92.33
KOG0822|consensus	649		92.25
KOG3924|consensus	419		91.97
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	91.9
PF03269	177	DUF268: Caenorhabditis protein of unknown function	91.71
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	91.36
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	91.26
PRK13699	227	putative methylase; Provisional	90.92
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	90.89
COG1565	370	Uncharacterized conserved protein [Function unknow	90.47
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	90.44
PRK14902	444	16S rRNA methyltransferase B; Provisional	89.87
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	89.74
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	89.64
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	89.55
PTZ00146	293	fibrillarin; Provisional	89.39
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	86.93
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.64
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	85.41
PRK11524	284	putative methyltransferase; Provisional	85.22
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	85.04
KOG2651|consensus	476		84.91
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	84.18
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	84.06
PF06016	1289	Reovirus_L2: Reovirus core-spike protein lambda-2	83.82
KOG0022|consensus	375		83.51
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	83.49
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	83.39
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	83.14
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	82.95
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	82.24
KOG2352|consensus	482		82.13
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	81.66
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	81.39
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	81.09
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	80.47
KOG1501|consensus	636		80.35
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	80.18

>KOG1099|consensus

Probab=100.00  E-value=1.9e-52  Score=372.82  Aligned_cols=207  Identities=41%  Similarity=0.642  Sum_probs=187.3

Q ss_pred             cccceeeeeccccCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCC
Q psy11646        163 YTQVRTYRCLLFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPG  242 (433)
Q Consensus       163 ~~~~r~~~m~pl~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~g  242 (433)
                      +....+.+|.|++|+.++|+||++.+|.+.|+++|+++++|+|+|||||++||+|++|+|+|.+|+.+||+|++++|++|
T Consensus        77 IVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~G  156 (294)
T KOG1099|consen   77 IVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPG  156 (294)
T ss_pred             EEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCC
Confidence            44555678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEeecCCHHHHHHHHhcccceeEEecCCCCcccccceeEEEeeccCCCCCCCCccCccccccCcccccccccccc
Q psy11646        243 GTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKDYVPTIMNPFTEITGAQWSDYVSSLSE  322 (433)
Q Consensus       243 G~fv~Kif~g~~~~~~~~~l~~~F~~v~~~KP~~sr~~s~E~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (433)
                      |+||+|||||++...++.|++.+|++|.++||+|||++|.|+|+||.+|.+|+||+|.+.+|+......+        ..
T Consensus       157 g~FVaKifRg~~tslLysql~~ff~kv~~~KPrsSR~sSiEaFvvC~~~~pp~g~~P~~~~~~~~~~~~~--------~~  228 (294)
T KOG1099|consen  157 GSFVAKIFRGRDTSLLYSQLRKFFKKVTCAKPRSSRNSSIEAFVVCLGYCPPEGFIPDLGTPLGDLCEDD--------MA  228 (294)
T ss_pred             CeeehhhhccCchHHHHHHHHHHhhceeeecCCccccccceeeeeecccCCccCCCCCCCCcccCccccc--------hh
Confidence            9999999999999999999999999999999999999999999999999999999999999887654322        12


Q ss_pred             CCccCCCcccceeeecCCC---CCCCccccccCCce-eEeeeeecccccccchhHHHHh
Q psy11646        323 SNKKDVARFISPYHHSKHP---ISEMTALLQSVGFN-IHHCDSNTSSYSYRTVSDLRQA  377 (433)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  377 (433)
                      .++.+++|.++||+|||||   |+|++||.+..+-+ .....+.+..|+|+.+.++++.
T Consensus       229 ~~~~~~~~~i~pf~aCgdl~~~Dsd~tYp~~~~~~s~~~dpvq~p~~p~Yk~al~~k~~  287 (294)
T KOG1099|consen  229 AELEEPDRVIVPFVACGDLGGYDSDRTYPSEAGESSVSLDPVQPPTAPPYKAALELKSS  287 (294)
T ss_pred             ccccCCCceecceEEeccccCCCCCCCCccccCCccccCCCCCCCCchHHHHHHHHhhc
Confidence            3356799999999999999   99999998655544 4556788999999988888764

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=1.9e-29  Score=227.40  Aligned_cols=159  Identities=30%  Similarity=0.494  Sum_probs=144.8

Q ss_pred             HHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccce-----------eeeeccccCceEEEccccccchHHH
Q psy11646        124 ISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVR-----------TYRCLLFTGVIQVQGDITKESTIKE  192 (433)
Q Consensus       124 l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r-----------~~~m~pl~gv~~iqgDi~~~~t~~~  192 (433)
                      +.+=++++++|..++  +++.+|           ++|+++...+           +.+|.|++++.++|+|++.+.+.+.
T Consensus        36 l~~k~~i~~~~~~Vi--DLGAAP-----------GgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~  102 (205)
T COG0293          36 LNEKFKLFKPGMVVV--DLGAAP-----------GGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEK  102 (205)
T ss_pred             HHHhcCeecCCCEEE--EcCCCC-----------CcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHH
Confidence            334458888876654  567777           8888876543           3567999999999999999999999


Q ss_pred             HHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHHHHHHHHhcccceeEEe
Q psy11646        193 IFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIA  272 (433)
Q Consensus       193 il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~~~~~~l~~~F~~v~~~  272 (433)
                      +.+.++..++|+|+|||||+++|.+..||+++++|+..|+.+|..+|++||+||+|+|+|.+.+.+++.++.+|+.|.+.
T Consensus       103 l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~  182 (205)
T COG0293         103 LLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIF  182 (205)
T ss_pred             HHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcccccceeEEEeeccCCC
Q psy11646        273 KPKSSRNSSIESFIVCQNYRPPK  295 (433)
Q Consensus       273 KP~~sr~~s~E~~~v~~~~~~~~  295 (433)
                      ||.|||++|+|+|+||.+|++++
T Consensus       183 KP~aSR~~S~E~y~v~~~~~~~~  205 (205)
T COG0293         183 KPKASRKRSREIYLVAKGFKGKE  205 (205)
T ss_pred             cCccccCCCceEEEEEeccccCC
Confidence            99999999999999999998753

>KOG4589|consensus

Probab=99.96  E-value=1.8e-28  Score=213.18  Aligned_cols=158  Identities=31%  Similarity=0.477  Sum_probs=144.8

Q ss_pred             HHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCcccccccee-----------eeeccccCceEEEc-cccccchHHH
Q psy11646        125 SNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRT-----------YRCLLFTGVIQVQG-DITKESTIKE  192 (433)
Q Consensus       125 ~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~-----------~~m~pl~gv~~iqg-Di~~~~t~~~  192 (433)
                      .+-++.|+||-+++  +.+..|           +.|++++.++.           ..+.|++|+..+++ |++++.+..+
T Consensus        61 ndKy~~l~p~~~Vl--D~G~AP-----------GsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~k  127 (232)
T KOG4589|consen   61 NDKYRFLRPEDTVL--DCGAAP-----------GSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRK  127 (232)
T ss_pred             hhhccccCCCCEEE--EccCCC-----------ChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHH
Confidence            34578999987765  446666           78887776554           44589999999999 9999999999


Q ss_pred             HHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHHHHHHHHhcccceeEEe
Q psy11646        193 IFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIA  272 (433)
Q Consensus       193 il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~~~~~~l~~~F~~v~~~  272 (433)
                      |.+.+...++|+|+|||+|+.||+...||+.+.+||.+++.+|...+.|+|+||||+|.|.+...|...|..+|..|+.+
T Consensus       128 i~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk~v  207 (232)
T KOG4589|consen  128 IFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVKKV  207 (232)
T ss_pred             HHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcccccceeEEEeeccCCC
Q psy11646        273 KPKSSRNSSIESFIVCQNYRPPK  295 (433)
Q Consensus       273 KP~~sr~~s~E~~~v~~~~~~~~  295 (433)
                      ||.|||.+|+|.|+||++||+..
T Consensus       208 KP~Asr~eS~E~y~v~~~~k~~~  230 (232)
T KOG4589|consen  208 KPDASRDESAETYLVCLNFKGNV  230 (232)
T ss_pred             CCccccccccceeeeeeeccCcC
Confidence            99999999999999999999865

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.93  E-value=2.4e-24  Score=199.45  Aligned_cols=174  Identities=26%  Similarity=0.404  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHhcC-CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc
Q psy11646         18 AAKLLSQYIDQFK-WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN   96 (433)
Q Consensus        18 ~~~ll~~l~~~l~-~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~   96 (433)
                      +...+.++..++. .+++.+|||||||+|.++..+ ++..+.. .+|+|+|+++ |.       ..++++++++|+..  
T Consensus        35 ~~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l-~~~~~~~-~~V~aVDi~~-~~-------~~~~v~~i~~D~~~--  102 (209)
T PRK11188         35 AWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYA-VTQIGDK-GRVIACDILP-MD-------PIVGVDFLQGDFRD--  102 (209)
T ss_pred             HHHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHH-HHHcCCC-ceEEEEeccc-cc-------CCCCcEEEecCCCC--
Confidence            3344556666666 478899999999999999444 4443322 4999999987 10       11345555555433  


Q ss_pred             ccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeeccccC
Q psy11646         97 LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTG  176 (433)
Q Consensus        97 l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~pl~g  176 (433)
                                                                                                      
T Consensus       103 --------------------------------------------------------------------------------  102 (209)
T PRK11188        103 --------------------------------------------------------------------------------  102 (209)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHH
Q psy11646        177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVV  256 (433)
Q Consensus       177 v~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~  256 (433)
                                ..+.+++...+....+|+|+||++|..+|....|.+.+..+...+++.+..+|++||.|++|+|++.+..
T Consensus       103 ----------~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~  172 (209)
T PRK11188        103 ----------ELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFD  172 (209)
T ss_pred             ----------hHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHH
Confidence                      2222333333334578999999999999998899999988899999999999999999999999999999


Q ss_pred             HHHHHHhcccceeEEecCCCCcccccceeEEEeeccC
Q psy11646        257 CLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRP  293 (433)
Q Consensus       257 ~~~~~l~~~F~~v~~~KP~~sr~~s~E~~~v~~~~~~  293 (433)
                      .+...++..|..|.+.||.|||.+|+|+|+||+||++
T Consensus       173 ~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~~~~~  209 (209)
T PRK11188        173 EYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKL  209 (209)
T ss_pred             HHHHHHHhCceEEEEECCccccccCceeEEEeecccC
Confidence            9999999999999999999999999999999999974

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=99.91  E-value=2.2e-24  Score=195.67  Aligned_cols=92  Identities=41%  Similarity=0.655  Sum_probs=82.0

Q ss_pred             CCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHHHHHHHHhcccceeEEecCCCCcc
Q psy11646        200 EKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRN  279 (433)
Q Consensus       200 ~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~~~~~~l~~~F~~v~~~KP~~sr~  279 (433)
                      .++|+|+|||+|+++|.+..|++.+.+|+..++.+|...|++||+||+|+|.+.+...+...++.+|+.|.+.||.+||+
T Consensus        90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~Kp~~sr~  169 (181)
T PF01728_consen   90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVKPPSSRS  169 (181)
T ss_dssp             CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE-TTSBT
T ss_pred             cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEECcCCCC
Confidence            57999999999999999999999999999999999999999999999999999998899999999999999999999999


Q ss_pred             cccceeEEEeec
Q psy11646        280 SSIESFIVCQNY  291 (433)
Q Consensus       280 ~s~E~~~v~~~~  291 (433)
                      +|+|.|+||+||
T Consensus       170 ~s~E~Ylv~~~f  181 (181)
T PF01728_consen  170 ESSEEYLVCRGF  181 (181)
T ss_dssp             TCBEEEEESEEE
T ss_pred             CccEEEEEEcCC
Confidence            999999999997

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.87  E-value=9.1e-21  Score=181.30  Aligned_cols=127  Identities=21%  Similarity=0.383  Sum_probs=104.8

Q ss_pred             CCchhhhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc
Q psy11646          1 MHKATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH   80 (433)
Q Consensus         1 m~~a~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~   80 (433)
                      |-+|+.|.+....+......    +++.+...++.+|||||||+|.++ ..++...+.  .+++|+|+|+.|++.|+++ 
T Consensus         1 ~w~~~~y~~~~~~~~~~~~~----ll~~l~~~~~~~vLDlGcG~G~~~-~~l~~~~p~--~~v~gvD~s~~~~~~a~~~-   72 (255)
T PRK14103          1 MWDPDVYLAFADHRGRPFYD----LLARVGAERARRVVDLGCGPGNLT-RYLARRWPG--AVIEALDSSPEMVAAARER-   72 (255)
T ss_pred             CCCHHHHHHHHhHhhCHHHH----HHHhCCCCCCCEEEEEcCCCCHHH-HHHHHHCCC--CEEEEEECCHHHHHHHHhc-
Confidence            56789999888777655554    455555677899999999999999 555555554  4899999999999999874 


Q ss_pred             CCCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         81 TNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        81 ~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                         ++++.++|+++.. +   .++||+|+++.++||++++..++++++++|||||.+++..+
T Consensus        73 ---~~~~~~~d~~~~~-~---~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~  127 (255)
T PRK14103         73 ---GVDARTGDVRDWK-P---KPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVP  127 (255)
T ss_pred             ---CCcEEEcChhhCC-C---CCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence               6889999987652 2   27899999999999999999999999999999999998754

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.83  E-value=1.8e-19  Score=172.58  Aligned_cols=127  Identities=31%  Similarity=0.585  Sum_probs=104.9

Q ss_pred             chhhhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC
Q psy11646          3 KATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN   82 (433)
Q Consensus         3 ~a~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~   82 (433)
                      +|+.|++....+...+..++    ..+...++.+|||||||+|.++ ..++...+.  .+++|+|+|+.|++.|+++.  
T Consensus         5 ~~~~Y~~~~~~~~~~~~~ll----~~~~~~~~~~vLDiGcG~G~~~-~~la~~~~~--~~v~gvD~s~~~i~~a~~~~--   75 (258)
T PRK01683          5 NPSLYLKFEDERTRPARDLL----ARVPLENPRYVVDLGCGPGNST-ELLVERWPA--ARITGIDSSPAMLAEARSRL--   75 (258)
T ss_pred             CHHHHHHHHHHhhcHHHHHH----hhCCCcCCCEEEEEcccCCHHH-HHHHHHCCC--CEEEEEECCHHHHHHHHHhC--
Confidence            78999988777765655554    4555577899999999999999 455555544  49999999999999999986  


Q ss_pred             CCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        83 ~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      .++.+..+|+.... +.   ++||+|+++.++||+.+...+++++.++|||||.+++..+
T Consensus        76 ~~~~~~~~d~~~~~-~~---~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~  131 (258)
T PRK01683         76 PDCQFVEADIASWQ-PP---QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP  131 (258)
T ss_pred             CCCeEEECchhccC-CC---CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence            57889999987643 22   6899999999999999999999999999999999988653

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.81  E-value=1.1e-19  Score=169.46  Aligned_cols=132  Identities=27%  Similarity=0.456  Sum_probs=106.5

Q ss_pred             hhhhhhhhhh----cHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhh
Q psy11646          4 ATLYETNNSM----QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH   79 (433)
Q Consensus         4 a~~Y~~~~~~----~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~   79 (433)
                      |..|+..+..    +.+.+++   .++..+..++|.+|||||||||.++ ..+++..+.  .+++|+|+|+.|++.|+++
T Consensus        21 a~~YD~~n~~~S~g~~~~Wr~---~~i~~~~~~~g~~vLDva~GTGd~a-~~~~k~~g~--g~v~~~D~s~~ML~~a~~k   94 (238)
T COG2226          21 AKKYDLMNDLMSFGLHRLWRR---ALISLLGIKPGDKVLDVACGTGDMA-LLLAKSVGT--GEVVGLDISESMLEVAREK   94 (238)
T ss_pred             HHHHHhhcccccCcchHHHHH---HHHHhhCCCCCCEEEEecCCccHHH-HHHHHhcCC--ceEEEEECCHHHHHHHHHH
Confidence            5677776622    2222222   3344444458999999999999999 555555554  4999999999999999999


Q ss_pred             cC---CCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646         80 HT---NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        80 ~~---~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      ..   ..+++|+++|++.+|+++   ++||+|++.+.|++++|.+.+|++++|+|||||++++.+...
T Consensus        95 ~~~~~~~~i~fv~~dAe~LPf~D---~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~  159 (238)
T COG2226          95 LKKKGVQNVEFVVGDAENLPFPD---NSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK  159 (238)
T ss_pred             hhccCccceEEEEechhhCCCCC---CccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence            82   244999999999988776   999999999999999999999999999999999999887554

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.81  E-value=1.7e-18  Score=154.94  Aligned_cols=145  Identities=25%  Similarity=0.456  Sum_probs=120.0

Q ss_pred             chhhhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC
Q psy11646          3 KATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN   82 (433)
Q Consensus         3 ~a~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~   82 (433)
                      +++.|.++.....+.+.+++.    .+...+..+|.|+|||+|..| .+|.+.+|..  +++|+|.|++|++.|+++.  
T Consensus         4 ~p~~Yl~F~~eRtRPa~dLla----~Vp~~~~~~v~DLGCGpGnsT-elL~~RwP~A--~i~GiDsS~~Mla~Aa~rl--   74 (257)
T COG4106           4 NPDQYLQFEDERTRPARDLLA----RVPLERPRRVVDLGCGPGNST-ELLARRWPDA--VITGIDSSPAMLAKAAQRL--   74 (257)
T ss_pred             CHHHHHHHHHhccCcHHHHHh----hCCccccceeeecCCCCCHHH-HHHHHhCCCC--eEeeccCCHHHHHHHHHhC--
Confidence            788999988887777776654    455567889999999999999 8999999876  9999999999999999987  


Q ss_pred             CCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc--CCchhhHHHhhhcCCCc
Q psy11646         83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA--FNPIYDLYEKLSRKPKW  160 (433)
Q Consensus        83 ~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~--~~p~~~~~~~~~~~~~W  160 (433)
                      ++++|..+|+.+...+    ..+|+++++.+++|++|....+..+...|.|||.+.+..+.  ..|.+..+........|
T Consensus        75 p~~~f~~aDl~~w~p~----~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~  150 (257)
T COG4106          75 PDATFEEADLRTWKPE----QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPF  150 (257)
T ss_pred             CCCceecccHhhcCCC----CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCch
Confidence            7899999999887433    68999999999999999999999999999999999988654  23444444444443444

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.79  E-value=2.8e-19  Score=168.04  Aligned_cols=134  Identities=28%  Similarity=0.482  Sum_probs=84.5

Q ss_pred             chhhhhhhhhhcH----HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHh
Q psy11646          3 KATLYETNNSMQQ----LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN   78 (433)
Q Consensus         3 ~a~~Y~~~~~~~~----~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~   78 (433)
                      -|..|+..+....    ..+++   .+++.+...++.+|||+|||||.++..++....+.+  +|+|+|+|+.|++.|++
T Consensus        16 ia~~YD~~n~~ls~g~~~~wr~---~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~--~v~~vD~s~~ML~~a~~   90 (233)
T PF01209_consen   16 IAPRYDRMNDLLSFGQDRRWRR---KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNG--KVVGVDISPGMLEVARK   90 (233)
T ss_dssp             ---------------------S---HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS-----EEEEEES-HHHHHHHHH
T ss_pred             HHHHhCCCccccCCcHHHHHHH---HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCcc--EEEEecCCHHHHHHHHH
Confidence            3567777654332    22333   233444557899999999999999944444333444  99999999999999999


Q ss_pred             hc---CCCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646         79 HH---TNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        79 ~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      +.   ...+++++++|+++.++++   ++||.|++.+.++.++|+.+++++++|+|||||++++.+.+.
T Consensus        91 k~~~~~~~~i~~v~~da~~lp~~d---~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~  156 (233)
T PF01209_consen   91 KLKREGLQNIEFVQGDAEDLPFPD---NSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSK  156 (233)
T ss_dssp             HHHHTT--SEEEEE-BTTB--S-T---T-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             HHHhhCCCCeeEEEcCHHHhcCCC---CceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence            87   3458999999999988776   999999999999999999999999999999999999987543

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>KOG1098|consensus

Probab=99.79  E-value=1.7e-19  Score=181.55  Aligned_cols=170  Identities=31%  Similarity=0.451  Sum_probs=148.8

Q ss_pred             HHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCcccccc-----------ceeeeeccccCceEEEccccccchHHH
Q psy11646        124 ISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQ-----------VRTYRCLLFTGVIQVQGDITKESTIKE  192 (433)
Q Consensus       124 l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~-----------~r~~~m~pl~gv~~iqgDi~~~~t~~~  192 (433)
                      +..-+.+|.++-.++  +++..|           +.|.+++.           ..+.++.|++++..++.||+.......
T Consensus        35 ln~ky~fl~~a~~vl--DLcaAP-----------G~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~  101 (780)
T KOG1098|consen   35 LNKKYKFLEKAHVVL--DLCAAP-----------GGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSK  101 (780)
T ss_pred             HHHHhccccccchhe--eeccCC-----------cHHHHHHHHhCCCCceEEEeeeeecccCCccchhhhhhhHHHHHHH
Confidence            334456666665433  345555           55655543           233567899999999999999999999


Q ss_pred             HHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHHHHHHHHhcccceeEEe
Q psy11646        193 IFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIA  272 (433)
Q Consensus       193 il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~~~~~~l~~~F~~v~~~  272 (433)
                      +...++..++|+|++||+|+|.|.+..|.+.|.+|...|+.+|+..|+.||+||-|+|+..+...++..+.++|.+|...
T Consensus       102 l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~dy~~ll~v~~qLf~kv~~t  181 (780)
T KOG1098|consen  102 LRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSEDYNGLLRVFGQLFKKVEAT  181 (780)
T ss_pred             HHHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCCcchHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcccccceeEEEeeccCCCCCCCCccCccc
Q psy11646        273 KPKSSRNSSIESFIVCQNYRPPKDYVPTIMNPFT  306 (433)
Q Consensus       273 KP~~sr~~s~E~~~v~~~~~~~~~~~~~~~~~~~  306 (433)
                      ||.+||+.|.|+|+||.+|..|..-.|++..|-+
T Consensus       182 kp~asr~~saeif~vc~~~l~P~~~dp~~ld~~~  215 (780)
T KOG1098|consen  182 KPAASRSESAEIFVVCLGYLAPKKVDPRLLDPKL  215 (780)
T ss_pred             CChhhhhhccceeeeeecccCccccCccccCHHH
Confidence            9999999999999999999999999998887644

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.79  E-value=1.4e-17  Score=151.98  Aligned_cols=92  Identities=36%  Similarity=0.592  Sum_probs=87.1

Q ss_pred             CCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHHHHHHHHhcccceeEEecCCCCcc
Q psy11646        200 EKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRN  279 (433)
Q Consensus       200 ~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~~~~~~l~~~F~~v~~~KP~~sr~  279 (433)
                      .++|+|+++++|..+|.+..++.........+++.+..+|++||.+++.++++.....++..++..|..+.+.||.+||.
T Consensus        97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~  176 (188)
T TIGR00438        97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRK  176 (188)
T ss_pred             CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEEEeCCCCCCc
Confidence            36899999999999999999999988888999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeEEEeec
Q psy11646        280 SSIESFIVCQNY  291 (433)
Q Consensus       280 ~s~E~~~v~~~~  291 (433)
                      .|.|+|+||.+|
T Consensus       177 ~~~~~~~~~~~~  188 (188)
T TIGR00438       177 RSAEVYIVAKRF  188 (188)
T ss_pred             ccceEEEEEecC
Confidence            999999999986

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.73  E-value=4.5e-17  Score=156.15  Aligned_cols=134  Identities=24%  Similarity=0.363  Sum_probs=102.9

Q ss_pred             chhhhhhhhhhc----HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHh
Q psy11646          3 KATLYETNNSMQ----QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN   78 (433)
Q Consensus         3 ~a~~Y~~~~~~~----~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~   78 (433)
                      .|..|+..+..+    ...+++.+   .+.+...++.+|||+|||+|..+ ..+++..+.. .+++|+|+|++|++.|++
T Consensus        42 ~A~~YD~~~~~~s~g~~~~~r~~~---~~~~~~~~~~~VLDlGcGtG~~~-~~la~~~~~~-~~V~gvD~S~~ml~~A~~  116 (261)
T PLN02233         42 IAPVYDNLNDLLSLGQHRIWKRMA---VSWSGAKMGDRVLDLCCGSGDLA-FLLSEKVGSD-GKVMGLDFSSEQLAVAAS  116 (261)
T ss_pred             hhhHHHHhhhhhcCChhHHHHHHH---HHHhCCCCCCEEEEECCcCCHHH-HHHHHHhCCC-CEEEEEECCHHHHHHHHH
Confidence            356677654433    22223222   33445567899999999999988 4454443222 399999999999999987


Q ss_pred             hc------CCCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646         79 HH------TNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        79 ~~------~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      +.      ...++++.++|+++.++++   ++||+|+++.++|+++++..++++++++|||||.+++.+...
T Consensus       117 r~~~~~~~~~~~i~~~~~d~~~lp~~~---~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~  185 (261)
T PLN02233        117 RQELKAKSCYKNIEWIEGDATDLPFDD---CYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK  185 (261)
T ss_pred             HhhhhhhccCCCeEEEEcccccCCCCC---CCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence            64      1357999999998877665   899999999999999999999999999999999999987654

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.70  E-value=1.3e-16  Score=127.92  Aligned_cols=95  Identities=29%  Similarity=0.604  Sum_probs=81.2

Q ss_pred             EEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcccccch
Q psy11646         38 LDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWV  117 (433)
Q Consensus        38 LDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~  117 (433)
                      ||+|||+|..+ ..+++. +  +.+++|+|+++.+++.++++....++.+.++|+++.++++   ++||+|++..++||+
T Consensus         1 LdiG~G~G~~~-~~l~~~-~--~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~---~sfD~v~~~~~~~~~   73 (95)
T PF08241_consen    1 LDIGCGTGRFA-AALAKR-G--GASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPD---NSFDVVFSNSVLHHL   73 (95)
T ss_dssp             EEET-TTSHHH-HHHHHT-T--TCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-T---T-EEEEEEESHGGGS
T ss_pred             CEecCcCCHHH-HHHHhc-c--CCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCcccc---ccccccccccceeec
Confidence            89999999999 555544 2  3599999999999999999986677889999999987776   999999999999999


Q ss_pred             hhHHHHHHHHHHhccCCCEEEE
Q psy11646        118 QDQRQAISNIYNLLMPGGEVLL  139 (433)
Q Consensus       118 ~d~~~~l~~i~~~LkpGG~lll  139 (433)
                      +++..+++++.|+|||||++++
T Consensus        74 ~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   74 EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCHHHHHHHHHHHcCcCeEEeC
Confidence            9999999999999999999875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.69  E-value=4.4e-16  Score=148.51  Aligned_cols=134  Identities=25%  Similarity=0.492  Sum_probs=106.9

Q ss_pred             chhhhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC
Q psy11646          3 KATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN   82 (433)
Q Consensus         3 ~a~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~   82 (433)
                      .+..|++.+..|+..+..+++.    +...++.+|||+|||+|.++ ..++.   .+ .+++++|+|+.|++.|+++.  
T Consensus        16 aa~~Y~~~~~~q~~~a~~l~~~----l~~~~~~~vLDiGcG~G~~~-~~l~~---~~-~~v~~~D~s~~~l~~a~~~~--   84 (251)
T PRK10258         16 AAAHYEQHAELQRQSADALLAM----LPQRKFTHVLDAGCGPGWMS-RYWRE---RG-SQVTALDLSPPMLAQARQKD--   84 (251)
T ss_pred             HHHhHhHHHHHHHHHHHHHHHh----cCccCCCeEEEeeCCCCHHH-HHHHH---cC-CeEEEEECCHHHHHHHHhhC--
Confidence            3567887777777766665544    33346789999999999988 44443   22 59999999999999999885  


Q ss_pred             CCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhH
Q psy11646         83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDL  150 (433)
Q Consensus        83 ~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~  150 (433)
                      ....+.++|++..++++   ++||+|+++.+++|.+++..++.++.++|+|||.++++.++...+.++
T Consensus        85 ~~~~~~~~d~~~~~~~~---~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el  149 (251)
T PRK10258         85 AADHYLAGDIESLPLAT---ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPEL  149 (251)
T ss_pred             CCCCEEEcCcccCcCCC---CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHH
Confidence            34578899998866554   789999999999999999999999999999999999988776554443

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.65  E-value=4e-15  Score=140.05  Aligned_cols=117  Identities=23%  Similarity=0.378  Sum_probs=96.0

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccc
Q psy11646         23 SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLES   99 (433)
Q Consensus        23 ~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~   99 (433)
                      ..++..+..+++.+|||+|||+|.++. .++...+.. .+++|+|+|+.+++.|+++.   ...++++..+|+...+++.
T Consensus        35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~-~la~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~  112 (231)
T TIGR02752        35 KDTMKRMNVQAGTSALDVCCGTADWSI-ALAEAVGPE-GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDD  112 (231)
T ss_pred             HHHHHhcCCCCCCEEEEeCCCcCHHHH-HHHHHhCCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCC
Confidence            455666667788999999999999984 444443322 49999999999999999876   3357899999998765543


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                         ++||+|++..++++.++...+++++.++|+|||.+++...+.
T Consensus       113 ---~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~  154 (231)
T TIGR02752       113 ---NSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQ  154 (231)
T ss_pred             ---CCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence               789999999999999999999999999999999998876543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.64  E-value=1.3e-15  Score=126.47  Aligned_cols=102  Identities=30%  Similarity=0.641  Sum_probs=82.2

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecc-cCCcccccccCcEeE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANI-ADQNLESIFLAKFNK  107 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di-~~~~l~~~~~~~fD~  107 (433)
                      |+.+|||||||+|.++..+ ++..+.  .+++|+|+|+.|++.|+++.    ...++++++.|+ ....    ..+.||+
T Consensus         1 p~~~vLDlGcG~G~~~~~l-~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D~   73 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIAL-ARLFPG--ARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD----FLEPFDL   73 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHH-HHHHTT--SEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT----TSSCEEE
T ss_pred             CCCEEEEEcCcCCHHHHHH-HhcCCC--CEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc----cCCCCCE
Confidence            5789999999999999544 443333  59999999999999999998    358999999999 2222    2267999


Q ss_pred             EEEcc-cccch---hhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        108 IFSFY-CLHWV---QDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       108 Vis~~-~l~~~---~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |++.. ++++.   ++...+++++++.|+|||++++..
T Consensus        74 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   74 VICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             EEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            99999 55433   567889999999999999999864

...

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.63  E-value=5e-15  Score=145.24  Aligned_cols=105  Identities=20%  Similarity=0.379  Sum_probs=88.8

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC----CCCeEEEEecccCCcccccccCcEeEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----NPKLEFVVANIADQNLESIFLAKFNKI  108 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~----~~~i~~~~~Di~~~~l~~~~~~~fD~V  108 (433)
                      ++.+|||||||+|.++ ..+++   .+ .+|+|+|+|+.|++.|+++..    ..++++.++|+++.+...   ++||+|
T Consensus       131 ~g~~ILDIGCG~G~~s-~~La~---~g-~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~---~~FD~V  202 (322)
T PLN02396        131 EGLKFIDIGCGGGLLS-EPLAR---MG-ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEG---RKFDAV  202 (322)
T ss_pred             CCCEEEEeeCCCCHHH-HHHHH---cC-CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhcc---CCCCEE
Confidence            5779999999999998 45543   22 599999999999999998761    247899999988755433   789999


Q ss_pred             EEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646        109 FSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus       109 is~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      ++..+++|+.++..+++++.++|||||.+++.+....
T Consensus       203 i~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~  239 (322)
T PLN02396        203 LSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRT  239 (322)
T ss_pred             EEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence            9999999999999999999999999999999876543

>KOG1540|consensus

Probab=99.63  E-value=3.8e-15  Score=136.69  Aligned_cols=137  Identities=22%  Similarity=0.376  Sum_probs=108.0

Q ss_pred             hhhhhhhhhhcHHHHHHHHH-HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCC---CCcEEEEEeCCHHHHHHHHhh
Q psy11646          4 ATLYETNNSMQQLDAAKLLS-QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPK---SVVKLVGLDVSPNMIKHAKNH   79 (433)
Q Consensus         4 a~~Y~~~~~~~~~~~~~ll~-~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~---~~~~v~gvDiS~~~l~~A~~~   79 (433)
                      |..|+..+..+..-.+++-. .+...+...++.++||++||||..+..++......   ...+|+++|++|.|+..++++
T Consensus        70 A~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqR  149 (296)
T KOG1540|consen   70 AKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQR  149 (296)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHH
Confidence            44566555544433333322 24566666789999999999999998877654332   225899999999999999988


Q ss_pred             c------CCCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         80 H------TNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        80 ~------~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      .      ...++.|+.+|++++|+++   .+||..++.+.+..+.++++++++++|+|||||++.+.++.
T Consensus       150 a~~~~l~~~~~~~w~~~dAE~LpFdd---~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFs  216 (296)
T KOG1540|consen  150 AKKRPLKASSRVEWVEGDAEDLPFDD---DSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFS  216 (296)
T ss_pred             HhhcCCCcCCceEEEeCCcccCCCCC---CcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcc
Confidence            7      2345899999999988776   99999999999999999999999999999999999987754

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.63  E-value=5.2e-15  Score=139.33  Aligned_cols=137  Identities=29%  Similarity=0.511  Sum_probs=110.1

Q ss_pred             chhhhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC
Q psy11646          3 KATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN   82 (433)
Q Consensus         3 ~a~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~   82 (433)
                      .+..|.+....|+..+..+++.+.... ...+.+|||+|||+|.++ ..++...+..  +++++|+++.+++.++++.. 
T Consensus         5 ~~~~y~~~~~~q~~~~~~l~~~~~~~~-~~~~~~vLDlG~G~G~~~-~~l~~~~~~~--~~~~~D~~~~~~~~~~~~~~-   79 (240)
T TIGR02072         5 AAKTYDRHAKIQREMAKRLLALLKEKG-IFIPASVLDIGCGTGYLT-RALLKRFPQA--EFIALDISAGMLAQAKTKLS-   79 (240)
T ss_pred             hhhchhHHHHHHHHHHHHHHHHhhhhc-cCCCCeEEEECCCccHHH-HHHHHhCCCC--cEEEEeChHHHHHHHHHhcC-
Confidence            346688777788877777776655432 234579999999999998 5555555543  79999999999999998864 


Q ss_pred             CCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCch
Q psy11646         83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPI  147 (433)
Q Consensus        83 ~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~  147 (433)
                      .++.+..+|++..++++   ++||+|++..++||..++..++.++.++|+|||.+++..+.....
T Consensus        80 ~~~~~~~~d~~~~~~~~---~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~  141 (240)
T TIGR02072        80 ENVQFICGDAEKLPLED---SSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTL  141 (240)
T ss_pred             CCCeEEecchhhCCCCC---CceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCH
Confidence            47889999998866544   789999999999999999999999999999999999987655443

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.63  E-value=4.5e-15  Score=142.47  Aligned_cols=117  Identities=21%  Similarity=0.411  Sum_probs=96.7

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcccc
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLES   99 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~   99 (433)
                      ....++..+..+++.+|||||||+|..+. .++...  + .+|+|+|+|+.|++.|+++. ...++.+..+|+...++++
T Consensus        40 ~~~~~l~~l~l~~~~~VLDiGcG~G~~a~-~la~~~--~-~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~  115 (263)
T PTZ00098         40 ATTKILSDIELNENSKVLDIGSGLGGGCK-YINEKY--G-AHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPE  115 (263)
T ss_pred             HHHHHHHhCCCCCCCEEEEEcCCCChhhH-HHHhhc--C-CEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCC
Confidence            35567777778899999999999999884 444322  2 49999999999999999987 3457999999998766554


Q ss_pred             cccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646        100 IFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                         ++||+|++..+++|+.  ++..++++++++|||||.+++.....
T Consensus       116 ---~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~  159 (263)
T PTZ00098        116 ---NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA  159 (263)
T ss_pred             ---CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence               8999999999888875  78899999999999999999987543

>PLN02244 tocopherol O-methyltransferase

Probab=99.63  E-value=3.5e-15  Score=148.41  Aligned_cols=119  Identities=20%  Similarity=0.407  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHhcCC-----CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEE
Q psy11646         17 DAAKLLSQYIDQFKW-----TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEF   87 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~-----~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~   87 (433)
                      ...++++++++.+..     .++.+|||||||+|..+ ..+++..   +.+|+|+|+|+.|++.|+++.    ...++++
T Consensus        97 aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~-~~La~~~---g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~  172 (340)
T PLN02244         97 AQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSS-RYLARKY---GANVKGITLSPVQAARANALAAAQGLSDKVSF  172 (340)
T ss_pred             HHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHH-HHHHHhc---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEE
Confidence            445667777777765     67889999999999998 4444433   259999999999999998876    2257999


Q ss_pred             EEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         88 VVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        88 ~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      .++|+.+.++++   ++||+|++..+++|+++...++++++++|||||.+++...
T Consensus       173 ~~~D~~~~~~~~---~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        173 QVADALNQPFED---GQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             EEcCcccCCCCC---CCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            999998876654   8999999999999999999999999999999999998764

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.63  E-value=3e-15  Score=131.74  Aligned_cols=108  Identities=33%  Similarity=0.542  Sum_probs=89.4

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKI  108 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~V  108 (433)
                      +.+.+|||+|||+|..+..++....+.  .+++|+|+|+.|++.|++++   ...+++|.++|+.+.+-. .. +.||+|
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~--~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~-~~~D~I   77 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPG--AKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LE-EKFDII   77 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTT--SEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SS-TTEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCC--CEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-cC-CCeeEE
Confidence            457899999999999995544344443  49999999999999999975   446899999999884311 11 789999


Q ss_pred             EEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646        109 FSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       109 is~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      ++..+++|..++..+++++.++|++||.+++....
T Consensus        78 ~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   78 ISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            99999999999999999999999999999988755

...

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.62  E-value=8.3e-16  Score=141.13  Aligned_cols=106  Identities=25%  Similarity=0.385  Sum_probs=88.7

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCC--CeEEEEecccCCcccccccCcEeEEEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNP--KLEFVVANIADQNLESIFLAKFNKIFS  110 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~--~i~~~~~Di~~~~l~~~~~~~fD~Vis  110 (433)
                      ++.+|||||||-|.++..+ ++   .| ..|+|+|+|+.+++.|+.+....  .+++.+..+++.....   ++||+|+|
T Consensus        59 ~g~~vLDvGCGgG~Lse~m-Ar---~G-a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~---~~FDvV~c  130 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPL-AR---LG-ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAG---GQFDVVTC  130 (243)
T ss_pred             CCCeEEEecCCccHhhHHH-HH---CC-CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcC---CCccEEEE
Confidence            7899999999999999444 43   33 69999999999999999988333  3557777777643222   79999999


Q ss_pred             cccccchhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        111 FYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       111 ~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      ..+++|++|++.+++++.+++||||.++++++..+.
T Consensus       131 mEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~  166 (243)
T COG2227         131 MEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTL  166 (243)
T ss_pred             hhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCH
Confidence            999999999999999999999999999999877554

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.60  E-value=9e-15  Score=139.87  Aligned_cols=118  Identities=24%  Similarity=0.412  Sum_probs=94.6

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC----CCCeEEEEecccCC
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----NPKLEFVVANIADQ   95 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~----~~~i~~~~~Di~~~   95 (433)
                      +-++.+++.+. .++.+|||+|||+|.++..++. .   + .+|+|+|+|+.|++.|+++..    ..+++++++|+.+.
T Consensus        32 ~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~-~---g-~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l  105 (255)
T PRK11036         32 QDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAE-L---G-HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDI  105 (255)
T ss_pred             HHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHH-c---C-CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHH
Confidence            34556666665 4567999999999999844443 2   2 599999999999999998871    25788999998764


Q ss_pred             cccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646         96 NLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus        96 ~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      .  ....++||+|++..+++|+.++..+++++.++|||||.+++......
T Consensus       106 ~--~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~  153 (255)
T PRK11036        106 A--QHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNAN  153 (255)
T ss_pred             h--hhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence            2  22347899999999999999999999999999999999998765544

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.58  E-value=1.8e-14  Score=141.88  Aligned_cols=117  Identities=20%  Similarity=0.302  Sum_probs=94.9

Q ss_pred             HHHHHHHHHhcCC-CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcc
Q psy11646         19 AKLLSQYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL   97 (433)
Q Consensus        19 ~~ll~~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l   97 (433)
                      ..+...+++.+.+ .++.+|||||||+|..+..+ ++..+.  .+++++|+|+.|++.|+++....++++..+|+++.++
T Consensus        98 e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~L-a~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~  174 (340)
T PLN02490         98 EDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGI-VKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPF  174 (340)
T ss_pred             HHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHH-HHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCC
Confidence            3444445555544 36789999999999988444 444433  4899999999999999998644678999999987665


Q ss_pred             cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +.   ++||+|+++.+++++++...++++++++|+|||.+++..
T Consensus       175 ~~---~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        175 PT---DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             CC---CceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            54   789999999999999999999999999999999998764

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.58  E-value=4.2e-15  Score=141.48  Aligned_cols=105  Identities=23%  Similarity=0.463  Sum_probs=84.4

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC----CCCeEEEEecccCCcccccccCcEeE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----NPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~----~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      .++.+|||||||+|..+.. +++.......+++|+|+|+.|++.|++++.    ..++++.++|+.+.++     ..+|+
T Consensus        55 ~~~~~vLDlGcGtG~~~~~-l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~D~  128 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLS-VRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-----ENASM  128 (247)
T ss_pred             CCCCEEEEEcccCCHHHHH-HHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----CCCCE
Confidence            4678999999999999844 443221112599999999999999999871    3479999999887543     35899


Q ss_pred             EEEcccccchhh--HHHHHHHHHHhccCCCEEEEEec
Q psy11646        108 IFSFYCLHWVQD--QRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       108 Vis~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      |+++.++|++++  ...+++++++.|||||.+++.+.
T Consensus       129 vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~  165 (247)
T PRK15451        129 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK  165 (247)
T ss_pred             EehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            999999999853  46789999999999999999863

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.57  E-value=2.1e-14  Score=136.34  Aligned_cols=122  Identities=21%  Similarity=0.324  Sum_probs=103.0

Q ss_pred             hcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC-CCeEEE
Q psy11646         13 MQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN-PKLEFV   88 (433)
Q Consensus        13 ~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~-~~i~~~   88 (433)
                      .........++.+++++.++||.+|||||||.|..+ ..+++..   +.+|+|+++|+++.+.+++++   +. .+++++
T Consensus        52 tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~-~~aA~~y---~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~  127 (283)
T COG2230          52 TLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLA-IYAAEEY---GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVR  127 (283)
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHH-HHHHHHc---CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEE
Confidence            455677788999999999999999999999999999 4444433   269999999999999999977   32 478888


Q ss_pred             EecccCCcccccccCcEeEEEEcccccchhh--HHHHHHHHHHhccCCCEEEEEeccC
Q psy11646         89 VANIADQNLESIFLAKFNKIFSFYCLHWVQD--QRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        89 ~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      ..|..+..      +.||-|+|..+++|+..  .+..++.++++|+|||.+++...+.
T Consensus       128 l~d~rd~~------e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~  179 (283)
T COG2230         128 LQDYRDFE------EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG  179 (283)
T ss_pred             eccccccc------cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence            88877642      56999999999999964  8999999999999999999976554

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.57  E-value=2e-14  Score=138.15  Aligned_cols=129  Identities=19%  Similarity=0.356  Sum_probs=95.7

Q ss_pred             hhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----C
Q psy11646          6 LYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----T   81 (433)
Q Consensus         6 ~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~   81 (433)
                      .|............+.++.+++++..++|.+|||||||.|..+..++. ..  + .+|+|+.+|+++.+.|+++.    .
T Consensus        35 ~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~-~~--g-~~v~gitlS~~Q~~~a~~~~~~~gl  110 (273)
T PF02353_consen   35 YFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAE-RY--G-CHVTGITLSEEQAEYARERIREAGL  110 (273)
T ss_dssp             --SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHH-HH-----EEEEEES-HHHHHHHHHHHHCSTS
T ss_pred             ecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHH-Hc--C-cEEEEEECCHHHHHHHHHHHHhcCC
Confidence            344445555667778899999999999999999999999999955544 32  2 59999999999999999888    2


Q ss_pred             CCCeEEEEecccCCcccccccCcEeEEEEcccccch--hhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646         82 NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWV--QDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        82 ~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~--~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      ..++++...|..+.  +    .+||.|+|..+++|+  .+....++++.++|+|||.+++...+.
T Consensus       111 ~~~v~v~~~D~~~~--~----~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~  169 (273)
T PF02353_consen  111 EDRVEVRLQDYRDL--P----GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH  169 (273)
T ss_dssp             SSTEEEEES-GGG---------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred             CCceEEEEeecccc--C----CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence            35688999887653  2    589999999999999  567899999999999999999876544

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK05785 hypothetical protein; Provisional

Probab=99.57  E-value=5.7e-14  Score=131.77  Aligned_cols=118  Identities=19%  Similarity=0.263  Sum_probs=88.2

Q ss_pred             chhhhhhhhhhc-----HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHH
Q psy11646          3 KATLYETNNSMQ-----QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK   77 (433)
Q Consensus         3 ~a~~Y~~~~~~~-----~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~   77 (433)
                      -|..|+..+...     ....+.++..+....  .++.+|||||||+|..+ ..+++..  + .+++|+|+|++|++.|+
T Consensus        18 iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~--~~~~~VLDlGcGtG~~~-~~l~~~~--~-~~v~gvD~S~~Ml~~a~   91 (226)
T PRK05785         18 IPKAYDRANRFISFNQDVRWRAELVKTILKYC--GRPKKVLDVAAGKGELS-YHFKKVF--K-YYVVALDYAENMLKMNL   91 (226)
T ss_pred             hhHHHHHhhhhccCCCcHHHHHHHHHHHHHhc--CCCCeEEEEcCCCCHHH-HHHHHhc--C-CEEEEECCCHHHHHHHH
Confidence            356677654321     222233444443332  34789999999999998 4444433  2 49999999999999998


Q ss_pred             hhcCCCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCC
Q psy11646         78 NHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPG  134 (433)
Q Consensus        78 ~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpG  134 (433)
                      ++.     .+.++|++..++++   ++||+|+++.++||++|+++++++++|+|||.
T Consensus        92 ~~~-----~~~~~d~~~lp~~d---~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~  140 (226)
T PRK05785         92 VAD-----DKVVGSFEALPFRD---KSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             hcc-----ceEEechhhCCCCC---CCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence            752     45788988877665   89999999999999999999999999999994

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.56  E-value=2.2e-14  Score=126.60  Aligned_cols=110  Identities=25%  Similarity=0.458  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcc
Q psy11646         18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL   97 (433)
Q Consensus        18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l   97 (433)
                      ..+++..+...  ..++.+|||||||+|.++ ..+++   .+ .+++|+|+++.+++.       ........+......
T Consensus         9 ~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~-~~l~~---~~-~~~~g~D~~~~~~~~-------~~~~~~~~~~~~~~~   74 (161)
T PF13489_consen    9 YADLLERLLPR--LKPGKRVLDIGCGTGSFL-RALAK---RG-FEVTGVDISPQMIEK-------RNVVFDNFDAQDPPF   74 (161)
T ss_dssp             HHHHHHHHHTC--TTTTSEEEEESSTTSHHH-HHHHH---TT-SEEEEEESSHHHHHH-------TTSEEEEEECHTHHC
T ss_pred             HHHHHHHHhcc--cCCCCEEEEEcCCCCHHH-HHHHH---hC-CEEEEEECCHHHHhh-------hhhhhhhhhhhhhhc
Confidence            33444445433  367889999999999998 55553   23 499999999999988       123344443333222


Q ss_pred             cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      +   .++||+|+++.+++|++++..+++++.++|||||.+++.++..
T Consensus        75 ~---~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   75 P---DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             H---SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             c---ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            3   3899999999999999999999999999999999999998765

...

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.56  E-value=3.3e-14  Score=130.71  Aligned_cols=105  Identities=21%  Similarity=0.376  Sum_probs=83.7

Q ss_pred             HhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccC
Q psy11646         27 DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLA  103 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~  103 (433)
                      +.+...++.+|||+|||+|..+ ..+++   .+ .+|+|+|+|+.|++.|+++.   ...++++.+.|+.+.+++    +
T Consensus        24 ~~l~~~~~~~vLDiGcG~G~~a-~~La~---~g-~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~   94 (197)
T PRK11207         24 EAVKVVKPGKTLDLGCGNGRNS-LYLAA---NG-FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD----G   94 (197)
T ss_pred             HhcccCCCCcEEEECCCCCHHH-HHHHH---CC-CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC----C
Confidence            3334456789999999999999 44443   23 59999999999999999876   234588888898765443    6


Q ss_pred             cEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEE
Q psy11646        104 KFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       104 ~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +||+|+++.++|+++  +...+++++.++|+|||.+++.
T Consensus        95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207         95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            799999999998875  5788999999999999996554

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.56  E-value=9.5e-16  Score=124.75  Aligned_cols=96  Identities=32%  Similarity=0.614  Sum_probs=59.6

Q ss_pred             EEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-C--CCCeEEEEecccCCcccccccCcEeEEEEcccc
Q psy11646         38 LDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-T--NPKLEFVVANIADQNLESIFLAKFNKIFSFYCL  114 (433)
Q Consensus        38 LDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~--~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l  114 (433)
                      ||||||+|..+..++. ..+.  .+++|+|+|+.|++.|++++ .  ..+......+..+. ......++||+|++..++
T Consensus         1 LdiGcG~G~~~~~l~~-~~~~--~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~fD~V~~~~vl   76 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLE-ELPD--ARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDL-FDYDPPESFDLVVASNVL   76 (99)
T ss_dssp             -EESTTTS-TTTTHHH-HC-E--EEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS----CCC----SEEEEE-TT
T ss_pred             CEeCccChHHHHHHHH-hCCC--CEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCCh-hhcccccccceehhhhhH
Confidence            7999999999955544 4443  59999999999998888887 2  22333333333222 111112599999999999


Q ss_pred             cchhhHHHHHHHHHHhccCCCEE
Q psy11646        115 HWVQDQRQAISNIYNLLMPGGEV  137 (433)
Q Consensus       115 ~~~~d~~~~l~~i~~~LkpGG~l  137 (433)
                      ||++++..++++++++|+|||.+
T Consensus        77 ~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   77 HHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             S--S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhhhhHHHHHHHHHHHcCCCCCC
Confidence            99999999999999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR00740 methyltransferase, putative

Probab=99.55  E-value=1.8e-14  Score=136.46  Aligned_cols=105  Identities=24%  Similarity=0.450  Sum_probs=84.8

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC----CCCeEEEEecccCCcccccccCcEeE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----NPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~----~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      .++.+|||+|||+|..+..++. .......+++|+|+|+.|++.|+++..    ..+++++++|+.+.++     ..+|+
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~-~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~d~  125 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARR-NINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----KNASM  125 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHH-hcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----CCCCE
Confidence            4678999999999999844443 322112599999999999999998861    3478999999987643     35899


Q ss_pred             EEEcccccchh--hHHHHHHHHHHhccCCCEEEEEec
Q psy11646        108 IFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       108 Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      |++..++||+.  +...++++++++|+|||.+++.+.
T Consensus       126 v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~  162 (239)
T TIGR00740       126 VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK  162 (239)
T ss_pred             EeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence            99999999985  467899999999999999999864

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK08317 hypothetical protein; Provisional

Probab=99.55  E-value=8.3e-14  Score=131.01  Aligned_cols=117  Identities=30%  Similarity=0.532  Sum_probs=96.8

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccC-CCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNL-PKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQN   96 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~-~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~   96 (433)
                      .+.+.+.+.+...++.+|||+|||+|.++..+ +... +.  .+++|+|+|+.+++.|+++.  ...++++...|+...+
T Consensus         6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~-a~~~~~~--~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~   82 (241)
T PRK08317          6 RYRARTFELLAVQPGDRVLDVGCGPGNDAREL-ARRVGPE--GRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP   82 (241)
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHH-HHhcCCC--cEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC
Confidence            34445666777788999999999999998544 4443 33  48999999999999999873  3467899999988765


Q ss_pred             ccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         97 LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        97 l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ++.   ++||+|++..+++|+.++..+++++.++|+|||.+++..+
T Consensus        83 ~~~---~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  125 (241)
T PRK08317         83 FPD---GSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT  125 (241)
T ss_pred             CCC---CCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence            544   7899999999999999999999999999999999998764

>TIGR00452 methyltransferase, putative

Probab=99.55  E-value=1.3e-13  Score=134.86  Aligned_cols=113  Identities=19%  Similarity=0.271  Sum_probs=89.6

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHH---hhc-CCCCeEEEEecccCCcc
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK---NHH-TNPKLEFVVANIADQNL   97 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~---~~~-~~~~i~~~~~Di~~~~l   97 (433)
                      ...++..+...++.+|||||||+|.++..++.    .+...|+|+|+|+.|+..++   +.. ...++.+..+++++.+.
T Consensus       110 ~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~----~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~  185 (314)
T TIGR00452       110 WDRVLPHLSPLKGRTILDVGCGSGYHMWRMLG----HGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE  185 (314)
T ss_pred             HHHHHHhcCCCCCCEEEEeccCCcHHHHHHHH----cCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC
Confidence            34566666666789999999999999855543    22247999999999987643   222 34578888888887643


Q ss_pred             cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      .    .+||+|+|+.+++|..++..++++++++|||||.+++.+.
T Consensus       186 ~----~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl  226 (314)
T TIGR00452       186 L----YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETL  226 (314)
T ss_pred             C----CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence            2    5899999999999999999999999999999999998754

Known examples to date are restricted to the proteobacteria.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.54  E-value=6.5e-14  Score=145.81  Aligned_cols=115  Identities=30%  Similarity=0.513  Sum_probs=94.7

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCccccc
Q psy11646         23 SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESI  100 (433)
Q Consensus        23 ~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~  100 (433)
                      +.+++.+...++.+|||||||+|..+. .++...  + .+++|+|+|+.|++.|+++.  ...+++|.++|+...++++ 
T Consensus       256 e~l~~~~~~~~~~~vLDiGcG~G~~~~-~la~~~--~-~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~-  330 (475)
T PLN02336        256 KEFVDKLDLKPGQKVLDVGCGIGGGDF-YMAENF--D-VHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPD-  330 (475)
T ss_pred             HHHHHhcCCCCCCEEEEEeccCCHHHH-HHHHhc--C-CEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCC-
Confidence            345555555678899999999999884 444433  2 48999999999999999876  2357899999998766554 


Q ss_pred             ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646        101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                        ++||+|++..+++|++++..++++++++|||||.+++.+...
T Consensus       331 --~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  372 (475)
T PLN02336        331 --NSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR  372 (475)
T ss_pred             --CCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence              789999999999999999999999999999999999986543

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.53  E-value=8.1e-14  Score=127.86  Aligned_cols=107  Identities=23%  Similarity=0.323  Sum_probs=82.0

Q ss_pred             HHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccC
Q psy11646         26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLA  103 (433)
Q Consensus        26 ~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~  103 (433)
                      .+.+...++.+|||+|||+|..+ ..+++   .+ .+|+|+|+|+.|++.++++.  ..-++.+...|+...+++    +
T Consensus        23 ~~~~~~~~~~~vLDiGcG~G~~a-~~la~---~g-~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~----~   93 (195)
T TIGR00477        23 REAVKTVAPCKTLDLGCGQGRNS-LYLSL---AG-YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN----E   93 (195)
T ss_pred             HHHhccCCCCcEEEeCCCCCHHH-HHHHH---CC-CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc----C
Confidence            33344445679999999999999 45543   23 59999999999999998876  222467777777654332    6


Q ss_pred             cEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEe
Q psy11646        104 KFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       104 ~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +||+|+++.++|+++  +....+++++++|+|||.+++..
T Consensus        94 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~  133 (195)
T TIGR00477        94 DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA  133 (195)
T ss_pred             CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence            799999999999874  56789999999999999966543

Part of a tellurite-reducing operon tehA and tehB

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.53  E-value=9.3e-14  Score=134.13  Aligned_cols=108  Identities=21%  Similarity=0.377  Sum_probs=89.6

Q ss_pred             CCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEe
Q psy11646         30 KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFN  106 (433)
Q Consensus        30 ~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD  106 (433)
                      ..+++.+|||+|||+|..+..+ +...... .+++|+|+|+.|++.|+++.   ...++++..+|++..++++   ++||
T Consensus        74 ~~~~g~~VLDiG~G~G~~~~~~-a~~~g~~-~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~---~~fD  148 (272)
T PRK11873         74 ELKPGETVLDLGSGGGFDCFLA-ARRVGPT-GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVAD---NSVD  148 (272)
T ss_pred             cCCCCCEEEEeCCCCCHHHHHH-HHHhCCC-CEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCC---Ccee
Confidence            3468899999999999887433 3332222 38999999999999999875   3458899999998766544   7899


Q ss_pred             EEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646        107 KIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       107 ~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      +|+++.++|+.++...+++++.++|||||++++...
T Consensus       149 ~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~  184 (272)
T PRK11873        149 VIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV  184 (272)
T ss_pred             EEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            999999999999999999999999999999998754

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.51  E-value=1.8e-13  Score=134.88  Aligned_cols=110  Identities=23%  Similarity=0.381  Sum_probs=87.9

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHh--hc--CCCCeEEEEecccCCcccc
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN--HH--TNPKLEFVVANIADQNLES   99 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~--~~--~~~~i~~~~~Di~~~~l~~   99 (433)
                      .+...+...++.+|||||||+|.++..++. .   +...|+|+|+|+.++..++.  +.  ...++.+..+|+++.+.  
T Consensus       113 ~l~~~l~~l~g~~VLDIGCG~G~~~~~la~-~---g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~--  186 (322)
T PRK15068        113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLG-A---GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA--  186 (322)
T ss_pred             HHHHhhCCCCCCEEEEeccCCcHHHHHHHH-c---CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC--
Confidence            344455545688999999999999955544 2   22379999999999876443  22  24579999999988655  


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                        .++||+|+|..++||..++..+++++++.|+|||.+++..
T Consensus       187 --~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        187 --LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             --cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence              2789999999999999999999999999999999999864

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.49  E-value=8.4e-14  Score=113.79  Aligned_cols=95  Identities=34%  Similarity=0.614  Sum_probs=72.7

Q ss_pred             EEEECCCCChhHHHHhcccCCCC-CcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeEEEEccc
Q psy11646         37 VLDVGCGPGNVTSKLLLPNLPKS-VVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNKIFSFYC  113 (433)
Q Consensus        37 VLDIGcG~G~~~~~~l~~~~~~~-~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~  113 (433)
                      |||+|||+|..+..++ +.++.+ ..+++|+|+|+.|++.++++.  ...++++.++|+.+.+..   .++||+|+++..
T Consensus         1 ILDlgcG~G~~~~~l~-~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~---~~~~D~v~~~~~   76 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALA-RRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFS---DGKFDLVVCSGL   76 (101)
T ss_dssp             -EEET-TTSHHHHHHH-HHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHH---SSSEEEEEE-TT
T ss_pred             CEEeecCCcHHHHHHH-HHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCccc---CCCeeEEEEcCC
Confidence            7999999999995444 443222 159999999999999999998  335899999999885433   379999999554


Q ss_pred             -ccchh--hHHHHHHHHHHhccCCC
Q psy11646        114 -LHWVQ--DQRQAISNIYNLLMPGG  135 (433)
Q Consensus       114 -l~~~~--d~~~~l~~i~~~LkpGG  135 (433)
                       ++|+.  +...+++++.++|+|||
T Consensus        77 ~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   77 SLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence             88875  46789999999999998

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.49  E-value=3.9e-13  Score=135.46  Aligned_cols=122  Identities=22%  Similarity=0.303  Sum_probs=97.5

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEeccc
Q psy11646         14 QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIA   93 (433)
Q Consensus        14 ~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~   93 (433)
                      ........+..+++.+..+++.+|||||||+|.++. .+++..  + .+|+|+|+|+.+++.|+++....++++...|..
T Consensus       148 L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~-~la~~~--g-~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~  223 (383)
T PRK11705        148 LEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLAR-YAAEHY--G-VSVVGVTISAEQQKLAQERCAGLPVEIRLQDYR  223 (383)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHH-HHHHHC--C-CEEEEEeCCHHHHHHHHHHhccCeEEEEECchh
Confidence            334556677788888888899999999999999984 444332  2 489999999999999999874345777777765


Q ss_pred             CCcccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646         94 DQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus        94 ~~~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      ..      .++||.|++..+++|+.  +....++++.++|||||.+++...+..
T Consensus       224 ~l------~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~  271 (383)
T PRK11705        224 DL------NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN  271 (383)
T ss_pred             hc------CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence            42      27899999999999984  467899999999999999999865543

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.48  E-value=2.7e-13  Score=130.06  Aligned_cols=117  Identities=24%  Similarity=0.410  Sum_probs=87.1

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChh----HHHHhcccCCC---CCcEEEEEeCCHHHHHHHHhhc-C----------
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNV----TSKLLLPNLPK---SVVKLVGLDVSPNMIKHAKNHH-T----------   81 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~----~~~~l~~~~~~---~~~~v~gvDiS~~~l~~A~~~~-~----------   81 (433)
                      .++..++......++.+|||+|||+|.-    + ..++...+.   ...+++|+|+|+.|++.|++.. .          
T Consensus        86 ~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA-~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~  164 (264)
T smart00138       86 KVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLA-MLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKA  164 (264)
T ss_pred             HHhHHHHHhcCCCCCEEEEeccccCChHHHHHH-HHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHH
Confidence            3444444433334568999999999963    3 223333322   1258999999999999999864 1          


Q ss_pred             -------------------CCCeEEEEecccCCcccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEE
Q psy11646         82 -------------------NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        82 -------------------~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~  140 (433)
                                         ..+++|.++|+.+.+.+.   ++||+|+|.++++|++  +...+++++++.|+|||++++.
T Consensus       165 ~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~---~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg  241 (264)
T smart00138      165 LLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPL---GDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG  241 (264)
T ss_pred             HHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCcc---CCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence                               136899999998865433   7899999999999995  4568999999999999999985

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.48  E-value=5.9e-13  Score=120.94  Aligned_cols=99  Identities=25%  Similarity=0.267  Sum_probs=80.4

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKI  108 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~V  108 (433)
                      +++.+|||+|||+|..+ ..++...+.  .+|+|+|+|+.|++.|+++.   ...++++.++|+.+.+.    .++||+|
T Consensus        44 ~~g~~VLDiGcGtG~~a-l~la~~~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~----~~~fDlV  116 (187)
T PRK00107         44 PGGERVLDVGSGAGFPG-IPLAIARPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ----EEKFDVV  116 (187)
T ss_pred             CCCCeEEEEcCCCCHHH-HHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC----CCCccEE
Confidence            45889999999999998 444444444  49999999999999999877   33469999999987543    3789999


Q ss_pred             EEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        109 FSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       109 is~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +++.    ..+.+.+++.++++|+|||.+++..
T Consensus       117 ~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107        117 TSRA----VASLSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             EEcc----ccCHHHHHHHHHHhcCCCeEEEEEe
Confidence            9975    3456789999999999999999875

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.48  E-value=6.5e-13  Score=123.78  Aligned_cols=134  Identities=25%  Similarity=0.430  Sum_probs=101.2

Q ss_pred             hhhhhhhhhhcHH-HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-C
Q psy11646          4 ATLYETNNSMQQL-DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-T   81 (433)
Q Consensus         4 a~~Y~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~   81 (433)
                      +..|+..+..... ........++..+...++.+|||+|||+|..+..+ ++..+.. .+++++|+++.+++.++++. .
T Consensus         9 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~-~~~~~~~-~~~~~iD~~~~~~~~~~~~~~~   86 (223)
T TIGR01934         9 APKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIEL-AKSAPDR-GKVTGVDFSSEMLEVAKKKSEL   86 (223)
T ss_pred             HhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHH-HHhcCCC-ceEEEEECCHHHHHHHHHHhcc
Confidence            3455554433221 12233445555555567899999999999998544 4444431 48999999999999999886 3


Q ss_pred             CCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         82 NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        82 ~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ..++++..+|+.+.+.+.   ++||+|+++.++++..+...+++++.++|+|||.+++...
T Consensus        87 ~~~i~~~~~d~~~~~~~~---~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  144 (223)
T TIGR01934        87 PLNIEFIQADAEALPFED---NSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEF  144 (223)
T ss_pred             CCCceEEecchhcCCCCC---CcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence            457899999998765433   7899999999999999999999999999999999998764

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>KOG1270|consensus

Probab=99.48  E-value=1.4e-13  Score=127.40  Aligned_cols=100  Identities=25%  Similarity=0.468  Sum_probs=83.3

Q ss_pred             CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-----CCC----CeEEEEecccCCcccccccCc
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-----TNP----KLEFVVANIADQNLESIFLAK  104 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-----~~~----~i~~~~~Di~~~~l~~~~~~~  104 (433)
                      |.+|||+|||.|-++ .-|++.   + .+|+|+|+++.|++.|+++.     ...    ++++...|++...      +.
T Consensus        90 g~~ilDvGCGgGLLS-epLArl---g-a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~------~~  158 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLS-EPLARL---G-AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT------GK  158 (282)
T ss_pred             CceEEEeccCccccc-hhhHhh---C-CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc------cc
Confidence            478999999999999 455532   3 69999999999999999987     122    3666667766642      66


Q ss_pred             EeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646        105 FNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       105 fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      ||.|+|..+++|+.|+..++..+.++|||||.+++++...
T Consensus       159 fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinr  198 (282)
T KOG1270|consen  159 FDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINR  198 (282)
T ss_pred             cceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence            9999999999999999999999999999999999987543

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.47  E-value=7.1e-13  Score=124.85  Aligned_cols=117  Identities=25%  Similarity=0.445  Sum_probs=94.4

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC----CCCeEEEEecccCCcc
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----NPKLEFVVANIADQNL   97 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~----~~~i~~~~~Di~~~~l   97 (433)
                      ...++..+...++.+|||+|||+|.++.. ++...+.. .+++++|+++.+++.+++++.    ..++.+...|+...+.
T Consensus        40 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~-l~~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  117 (239)
T PRK00216         40 RRKTIKWLGVRPGDKVLDLACGTGDLAIA-LAKAVGKT-GEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF  117 (239)
T ss_pred             HHHHHHHhCCCCCCeEEEeCCCCCHHHHH-HHHHcCCC-CeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC
Confidence            34455555556788999999999999844 44444422 599999999999999999872    3568899999887554


Q ss_pred             cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      +.   ++||+|++..++|+..+....++++.++|+|||.+++....
T Consensus       118 ~~---~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~  160 (239)
T PRK00216        118 PD---NSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS  160 (239)
T ss_pred             CC---CCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence            33   78999999999999999999999999999999999887643

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.46  E-value=3e-13  Score=126.66  Aligned_cols=101  Identities=25%  Similarity=0.442  Sum_probs=84.9

Q ss_pred             CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeEEEE
Q psy11646         35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNKIFS  110 (433)
Q Consensus        35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis  110 (433)
                      .+|||||||+|..+. .+++..+.  .+++|+|+|+.+++.|+++.    ...++++...|+...+.+    ++||+|++
T Consensus         1 ~~vLDiGcG~G~~~~-~la~~~~~--~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~----~~fD~I~~   73 (224)
T smart00828        1 KRVLDFGCGYGSDLI-DLAERHPH--LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP----DTYDLVFG   73 (224)
T ss_pred             CeEEEECCCCCHHHH-HHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC----CCCCEeeh
Confidence            379999999999984 44444443  48999999999999999986    235789999998665433    68999999


Q ss_pred             cccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646        111 FYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       111 ~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ..+++|+.++...++++.++|+|||.+++...
T Consensus        74 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~  105 (224)
T smart00828       74 FEVIHHIKDKMDLFSNISRHLKDGGHLVLADF  105 (224)
T ss_pred             HHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            99999999999999999999999999998764

>KOG4300|consensus

Probab=99.46  E-value=1e-12  Score=117.22  Aligned_cols=108  Identities=23%  Similarity=0.361  Sum_probs=88.6

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeE-EEEecccCCcccccccCcEeEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLE-FVVANIADQNLESIFLAKFNKI  108 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~-~~~~Di~~~~l~~~~~~~fD~V  108 (433)
                      ....|||||||||..- .+.. .. ++ .+||++|.++.|-+.|.+.+   ...++. |++++.++.+  +..++++|.|
T Consensus        76 ~K~~vLEvgcGtG~Nf-kfy~-~~-p~-~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~--~l~d~s~DtV  149 (252)
T KOG4300|consen   76 GKGDVLEVGCGTGANF-KFYP-WK-PI-NSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLP--QLADGSYDTV  149 (252)
T ss_pred             CccceEEecccCCCCc-cccc-CC-CC-ceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCc--ccccCCeeeE
Confidence            3456899999999986 4432 11 22 58999999999999999888   235666 8899988854  3445999999


Q ss_pred             EEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        109 FSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       109 is~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      ++..+|...+++.+.++++.++|||||++++.+.+..+
T Consensus       150 V~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~  187 (252)
T KOG4300|consen  150 VCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGE  187 (252)
T ss_pred             EEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence            99999999999999999999999999999999876655

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.45  E-value=1.4e-12  Score=125.88  Aligned_cols=107  Identities=27%  Similarity=0.490  Sum_probs=83.4

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCC-CcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKS-VVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFS  110 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~-~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis  110 (433)
                      .++.+|||+|||+|.++..+ +...+.. ..+++|+|+|+.|++.|+++.  +++.+.++|+...++++   ++||+|++
T Consensus        84 ~~~~~vLDiGcG~G~~~~~l-~~~~~~~~~~~v~giD~s~~~l~~A~~~~--~~~~~~~~d~~~lp~~~---~sfD~I~~  157 (272)
T PRK11088         84 EKATALLDIGCGEGYYTHAL-ADALPEITTMQLFGLDISKVAIKYAAKRY--PQVTFCVASSHRLPFAD---QSLDAIIR  157 (272)
T ss_pred             CCCCeEEEECCcCCHHHHHH-HHhcccccCCeEEEECCCHHHHHHHHHhC--CCCeEEEeecccCCCcC---CceeEEEE
Confidence            35678999999999998444 4333322 247999999999999999875  67899999998876654   89999998


Q ss_pred             cccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHH
Q psy11646        111 FYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLY  151 (433)
Q Consensus       111 ~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~  151 (433)
                      ...-       ..++++.++|||||.+++..++....++..
T Consensus       158 ~~~~-------~~~~e~~rvLkpgG~li~~~p~~~~l~el~  191 (272)
T PRK11088        158 IYAP-------CKAEELARVVKPGGIVITVTPGPRHLFELK  191 (272)
T ss_pred             ecCC-------CCHHHHHhhccCCCEEEEEeCCCcchHHHH
Confidence            7642       246789999999999999887766655443

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.45  E-value=1.3e-12  Score=120.68  Aligned_cols=100  Identities=17%  Similarity=0.280  Sum_probs=79.5

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSF  111 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~  111 (433)
                      .++.+|||||||+|..+ ..++...+.  .+++|+|+|+.|++.|+++.  +++.+.++|+.+ ++++   ++||+|+++
T Consensus        42 ~~~~~VLDiGCG~G~~~-~~L~~~~~~--~~v~giDiS~~~l~~A~~~~--~~~~~~~~d~~~-~~~~---~sfD~V~~~  112 (204)
T TIGR03587        42 PKIASILELGANIGMNL-AALKRLLPF--KHIYGVEINEYAVEKAKAYL--PNINIIQGSLFD-PFKD---NFFDLVLTK  112 (204)
T ss_pred             CCCCcEEEEecCCCHHH-HHHHHhCCC--CeEEEEECCHHHHHHHHhhC--CCCcEEEeeccC-CCCC---CCEEEEEEC
Confidence            46779999999999998 445544443  48999999999999999875  467888899876 4443   899999999


Q ss_pred             ccccchh--hHHHHHHHHHHhccCCCEEEEEec
Q psy11646        112 YCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       112 ~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      .+++|+.  +...+++++.+++  ++.+++.+.
T Consensus       113 ~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~  143 (204)
T TIGR03587       113 GVLIHINPDNLPTAYRELYRCS--NRYILIAEY  143 (204)
T ss_pred             ChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence            9999884  4577889999987  466666653

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.45  E-value=1.9e-12  Score=109.15  Aligned_cols=110  Identities=16%  Similarity=0.328  Sum_probs=83.9

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCccccc
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESI  100 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~  100 (433)
                      .++..+...++.+|||+|||+|.++..+ ++..+.  .+++++|+|+.+++.|+++.   ...++++...|+... .+ .
T Consensus        10 ~~~~~~~~~~~~~vldlG~G~G~~~~~l-~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~-~   84 (124)
T TIGR02469        10 LTLSKLRLRPGDVLWDIGAGSGSITIEA-ARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEA-LE-D   84 (124)
T ss_pred             HHHHHcCCCCCCEEEEeCCCCCHHHHHH-HHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccccc-Ch-h
Confidence            3455555667789999999999999444 444444  48999999999999998876   335788888887642 11 1


Q ss_pred             ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ..++||.|++....+.   ...+++++.+.|+|||.+++..
T Consensus        85 ~~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        85 SLPEPDRVFIGGSGGL---LQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             hcCCCCEEEECCcchh---HHHHHHHHHHHcCCCCEEEEEe
Confidence            2268999999876553   3588999999999999999865

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.45  E-value=9.4e-13  Score=117.97  Aligned_cols=104  Identities=25%  Similarity=0.468  Sum_probs=80.1

Q ss_pred             cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcccccccCcEeE
Q psy11646         29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      ++...-.++||+|||.|.++ ..|+..+    .+++++|+|+.+++.|+++. ..++|+|.++|+.+.. ++   ++||+
T Consensus        39 Lp~~ry~~alEvGCs~G~lT-~~LA~rC----d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~-P~---~~FDL  109 (201)
T PF05401_consen   39 LPRRRYRRALEVGCSIGVLT-ERLAPRC----DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFW-PE---GRFDL  109 (201)
T ss_dssp             HTTSSEEEEEEE--TTSHHH-HHHGGGE----EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----S---S-EEE
T ss_pred             cCccccceeEecCCCccHHH-HHHHHhh----CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC-CC---CCeeE
Confidence            44455678999999999999 5566442    48999999999999999999 5589999999997653 33   89999


Q ss_pred             EEEcccccchhh---HHHHHHHHHHhccCCCEEEEEe
Q psy11646        108 IFSFYCLHWVQD---QRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       108 Vis~~~l~~~~d---~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |++..+++++.+   ...++.++...|+|||.+++..
T Consensus       110 IV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~  146 (201)
T PF05401_consen  110 IVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH  146 (201)
T ss_dssp             EEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence            999999999954   5678999999999999999864

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK06922 hypothetical protein; Provisional

Probab=99.44  E-value=1e-12  Score=137.18  Aligned_cols=109  Identities=18%  Similarity=0.385  Sum_probs=86.5

Q ss_pred             CCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeE
Q psy11646         30 KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        30 ~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      .+.++.+|||+|||+|..+ ..+++..+..  +++|+|+|+.|++.|+++.  ...++++.++|+.+.+. .+.+++||+
T Consensus       415 d~~~g~rVLDIGCGTG~ls-~~LA~~~P~~--kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~-~fedeSFDv  490 (677)
T PRK06922        415 DYIKGDTIVDVGAGGGVML-DMIEEETEDK--RIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSS-SFEKESVDT  490 (677)
T ss_pred             hhcCCCEEEEeCCCCCHHH-HHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCcc-ccCCCCEEE
Confidence            3446889999999999988 4555555544  9999999999999999876  23467888899876430 123488999


Q ss_pred             EEEcccccch-------------hhHHHHHHHHHHhccCCCEEEEEec
Q psy11646        108 IFSFYCLHWV-------------QDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       108 Vis~~~l~~~-------------~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      |+++.++|++             .+...++++++++|||||.+++.+.
T Consensus       491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            9999999865             2567899999999999999999763

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.43  E-value=1.5e-12  Score=117.95  Aligned_cols=98  Identities=24%  Similarity=0.275  Sum_probs=77.1

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      ++.+|||+|||+|..+. .++...+.  .+|+|+|+|+.|++.++++.   +..+++++++|+++.. .   .++||+|+
T Consensus        42 ~~~~vLDiGcGtG~~s~-~la~~~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~---~~~fD~I~  114 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGI-PLAIARPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-H---EEQFDVIT  114 (181)
T ss_pred             CCCeEEEecCCCCccHH-HHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-c---cCCccEEE
Confidence            48899999999999884 44444444  48999999999999888775   3357999999998752 2   37899999


Q ss_pred             EcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        110 SFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       110 s~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +.. ++   +....++.+.++|+|||.+++..
T Consensus       115 s~~-~~---~~~~~~~~~~~~LkpgG~lvi~~  142 (181)
T TIGR00138       115 SRA-LA---SLNVLLELTLNLLKVGGYFLAYK  142 (181)
T ss_pred             ehh-hh---CHHHHHHHHHHhcCCCCEEEEEc
Confidence            976 44   45567888899999999988764

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.43  E-value=7.5e-13  Score=122.13  Aligned_cols=125  Identities=18%  Similarity=0.226  Sum_probs=90.6

Q ss_pred             HHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecc-cCCcccccc
Q psy11646         26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANI-ADQNLESIF  101 (433)
Q Consensus        26 ~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di-~~~~l~~~~  101 (433)
                      .+.+.. ++.+|||+|||+|..+. .++...+..  +++|+|+|+.|++.|+++.   ...++.++++|+ +..+ ....
T Consensus        34 ~~~~~~-~~~~VLDiGcGtG~~~~-~la~~~p~~--~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~-~~~~  108 (202)
T PRK00121         34 AELFGN-DAPIHLEIGFGKGEFLV-EMAKANPDI--NFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL-DMFP  108 (202)
T ss_pred             HHHcCC-CCCeEEEEccCCCHHHH-HHHHHCCCc--cEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH-HHcC
Confidence            344433 57899999999999994 455455543  8999999999999999876   336799999998 5432 0122


Q ss_pred             cCcEeEEEEcccccchh--------hHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhh
Q psy11646        102 LAKFNKIFSFYCLHWVQ--------DQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLS  155 (433)
Q Consensus       102 ~~~fD~Vis~~~l~~~~--------d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~  155 (433)
                      .++||.|+++.+..|..        ....++++++++|||||.+++..............+.
T Consensus       109 ~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~  170 (202)
T PRK00121        109 DGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLS  170 (202)
T ss_pred             ccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHH
Confidence            37899999987654432        1467899999999999999998655444444444443

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.43  E-value=1.1e-12  Score=127.60  Aligned_cols=100  Identities=19%  Similarity=0.343  Sum_probs=81.1

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeEEEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNKIFS  110 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis  110 (433)
                      ++.+|||+|||+|..+. .++.   .+ .+|+|+|+|+.+++.++++.  ...++++...|+....+    .++||+|++
T Consensus       120 ~~~~vLDlGcG~G~~~~-~la~---~g-~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~----~~~fD~I~~  190 (287)
T PRK12335        120 KPGKALDLGCGQGRNSL-YLAL---LG-FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI----QEEYDFILS  190 (287)
T ss_pred             CCCCEEEeCCCCCHHHH-HHHH---CC-CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc----cCCccEEEE
Confidence            45599999999999984 4443   23 59999999999999998877  22368888888876543    378999999


Q ss_pred             cccccchh--hHHHHHHHHHHhccCCCEEEEEe
Q psy11646        111 FYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       111 ~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ..++|+++  +...+++++.++|+|||++++..
T Consensus       191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~  223 (287)
T PRK12335        191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC  223 (287)
T ss_pred             cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            99999874  57789999999999999977653

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.42  E-value=5.6e-12  Score=118.83  Aligned_cols=116  Identities=22%  Similarity=0.308  Sum_probs=89.9

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccc
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLES   99 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~   99 (433)
                      +..+...+...++.+|||||||+|.++..+.. .   + .+++++|+++.+++.|+++.  ....+++...|+.+.+  .
T Consensus        37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~---~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~  109 (233)
T PRK05134         37 LNYIREHAGGLFGKRVLDVGCGGGILSESMAR-L---G-ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELA--A  109 (233)
T ss_pred             HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHH-c---C-CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhh--h
Confidence            34444444445788999999999999844433 2   2 48999999999999999876  2235677777776532  1


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      ...++||+|++..++++..+...+++++.++|+|||.+++..+..
T Consensus       110 ~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~  154 (233)
T PRK05134        110 EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNR  154 (233)
T ss_pred             hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence            123789999999999999999999999999999999999886543

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.41  E-value=2.8e-12  Score=118.59  Aligned_cols=111  Identities=14%  Similarity=0.169  Sum_probs=86.1

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC-CCeEEEEecccCC
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN-PKLEFVVANIADQ   95 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~-~~i~~~~~Di~~~   95 (433)
                      ..+..+++.+..+++.+|||||||+|..+ ..+++..+.. .+|+++|+++.+++.|++++   .. .++++..+|..+.
T Consensus        59 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~~-~~la~~~~~~-g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~  136 (205)
T PRK13944         59 HMVAMMCELIEPRPGMKILEVGTGSGYQA-AVCAEAIERR-GKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG  136 (205)
T ss_pred             HHHHHHHHhcCCCCCCEEEEECcCccHHH-HHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC
Confidence            44556667777778899999999999999 5555554433 48999999999999999876   22 3588999998764


Q ss_pred             cccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         96 NLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        96 ~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ...   .++||.|++..++++++      .++.+.|+|||++++..
T Consensus       137 ~~~---~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        137 LEK---HAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV  173 (205)
T ss_pred             Ccc---CCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence            222   26899999999887664      36789999999998754

>PRK06202 hypothetical protein; Provisional

Probab=99.41  E-value=2.2e-12  Score=121.56  Aligned_cols=108  Identities=20%  Similarity=0.273  Sum_probs=81.4

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCC-C-CcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPK-S-VVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~-~-~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      .++.+|||+|||+|.++.. ++...+. + ..+++|+|+|+.|++.|+++....++++.+.+....+.+   +++||+|+
T Consensus        59 ~~~~~iLDlGcG~G~~~~~-L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~---~~~fD~V~  134 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAID-LARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAE---GERFDVVT  134 (232)
T ss_pred             CCCcEEEEeccCCCHHHHH-HHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEeccccccc---CCCccEEE
Confidence            4678999999999998844 4332211 1 148999999999999999987545677777776654433   37899999


Q ss_pred             EcccccchhhH--HHHHHHHHHhccCCCEEEEEeccCC
Q psy11646        110 SFYCLHWVQDQ--RQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus       110 s~~~l~~~~d~--~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      ++.++||+++.  ..+++++.++++  |.+++.+....
T Consensus       135 ~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~  170 (232)
T PRK06202        135 SNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS  170 (232)
T ss_pred             ECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence            99999999874  579999999998  55555554443

>KOG2361|consensus

Probab=99.41  E-value=2e-12  Score=118.22  Aligned_cols=170  Identities=24%  Similarity=0.327  Sum_probs=123.9

Q ss_pred             HHHHHHHHhcCCC--CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCC
Q psy11646         20 KLLSQYIDQFKWT--DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQ   95 (433)
Q Consensus        20 ~ll~~l~~~l~~~--~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~   95 (433)
                      .++.++-+.+...  +..+|||||||.|.....+++-.-..+ ..++++|.||.+++..+++.  ...++...+.|+...
T Consensus        56 wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~-l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~  134 (264)
T KOG2361|consen   56 WLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNR-LKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSP  134 (264)
T ss_pred             HHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCC-eEEEEcCCChHHHHHHHhccccchhhhcccceeccch
Confidence            4445555555443  233899999999999877776543333 78999999999999999987  446777778888765


Q ss_pred             cccc-cccCcEeEEEEcccccch--hhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeec
Q psy11646         96 NLES-IFLAKFNKIFSFYCLHWV--QDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCL  172 (433)
Q Consensus        96 ~l~~-~~~~~fD~Vis~~~l~~~--~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~  172 (433)
                      .+.. ...+++|.|++.++|..+  +....++.+++++|||||.+++-+.+...+..                .|..+-.
T Consensus       135 ~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dlaq----------------lRF~~~~  198 (264)
T KOG2361|consen  135 SLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQ----------------LRFKKGQ  198 (264)
T ss_pred             hccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHH----------------HhccCCc
Confidence            5333 445899999999999877  35788999999999999999998776544211                1112223


Q ss_pred             cccCceEEEcccccc--chHHHHHHhcCCCCCeEEE
Q psy11646        173 LFTGVIQVQGDITKE--STIKEIFSHFDDEKVDLVV  206 (433)
Q Consensus       173 pl~gv~~iqgDi~~~--~t~~~il~~~~~~~~dlVv  206 (433)
                      -+.+...+++|.|..  -+.+++.++|..++++.+-
T Consensus       199 ~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~  234 (264)
T KOG2361|consen  199 CISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQ  234 (264)
T ss_pred             eeecceEEccCCceeeeccHHHHHHHHHhcccchhc
Confidence            456667888998864  4678888888887776653

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.41  E-value=2.9e-12  Score=115.97  Aligned_cols=104  Identities=22%  Similarity=0.380  Sum_probs=80.4

Q ss_pred             cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEe
Q psy11646         29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFN  106 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD  106 (433)
                      ++.-++.++||+|||.|..+ .+|+.   .| ..|+++|+|+.+++.+++.+  ..-.++..+.|+++..++    +.||
T Consensus        26 ~~~~~~g~~LDlgcG~GRNa-lyLA~---~G-~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~----~~yD   96 (192)
T PF03848_consen   26 VPLLKPGKALDLGCGEGRNA-LYLAS---QG-FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP----EEYD   96 (192)
T ss_dssp             CTTS-SSEEEEES-TTSHHH-HHHHH---TT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T----TTEE
T ss_pred             HhhcCCCcEEEcCCCCcHHH-HHHHH---CC-CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc----CCcC
Confidence            44446789999999999999 56663   34 79999999999999887766  344588999999876554    6899


Q ss_pred             EEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEe
Q psy11646        107 KIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       107 ~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +|++..++++++  .....++++...++|||++++..
T Consensus        97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~  133 (192)
T PF03848_consen   97 FIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT  133 (192)
T ss_dssp             EEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence            999988888884  46778999999999999988854

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.40  E-value=6.5e-12  Score=112.70  Aligned_cols=118  Identities=28%  Similarity=0.451  Sum_probs=86.8

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCC
Q psy11646         19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQ   95 (433)
Q Consensus        19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~   95 (433)
                      ..+|.+.+...   ++.+|||+|||+|..+ ..++...+.  .+++++|+++.+++.|++++   ...++++...|+...
T Consensus        20 t~lL~~~l~~~---~~~~vLDlG~G~G~i~-~~la~~~~~--~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~   93 (170)
T PF05175_consen   20 TRLLLDNLPKH---KGGRVLDLGCGSGVIS-LALAKRGPD--AKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA   93 (170)
T ss_dssp             HHHHHHHHHHH---TTCEEEEETSTTSHHH-HHHHHTSTC--EEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT
T ss_pred             HHHHHHHHhhc---cCCeEEEecCChHHHH-HHHHHhCCC--CEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc
Confidence            33444444432   6789999999999999 555555554  37999999999999999988   223388999897654


Q ss_pred             cccccccCcEeEEEEcccccchhh-----HHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646         96 NLESIFLAKFNKIFSFYCLHWVQD-----QRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus        96 ~l~~~~~~~fD~Vis~~~l~~~~d-----~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                       .+   .++||+|+++.+++.-.+     ....++...+.|+|||.+++.......
T Consensus        94 -~~---~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~  145 (170)
T PF05175_consen   94 -LP---DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLG  145 (170)
T ss_dssp             -CC---TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSC
T ss_pred             -cc---ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCC
Confidence             22   389999999999876643     577899999999999999887654433

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PLN03075 nicotianamine synthase; Provisional

Probab=99.40  E-value=2.5e-12  Score=123.59  Aligned_cols=104  Identities=22%  Similarity=0.352  Sum_probs=84.8

Q ss_pred             CCCCEEEEECCCCChhHHHHhc-ccCCCCCcEEEEEeCCHHHHHHHHhhc-C----CCCeEEEEecccCCcccccccCcE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLL-PNLPKSVVKLVGLDVSPNMIKHAKNHH-T----NPKLEFVVANIADQNLESIFLAKF  105 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~-~~~~~~~~~v~gvDiS~~~l~~A~~~~-~----~~~i~~~~~Di~~~~l~~~~~~~f  105 (433)
                      .++.+|+|||||+|.++..+++ ...+.+  +++|+|+++++++.|++.+ .    ..+++|.++|+.+....   .+.|
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~--~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~---l~~F  196 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTT--SFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES---LKEY  196 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCC--EEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc---cCCc
Confidence            4778999999999977644444 445554  9999999999999999987 2    35799999998764211   2689


Q ss_pred             eEEEEcccccch--hhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        106 NKIFSFYCLHWV--QDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       106 D~Vis~~~l~~~--~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |+|++. +++++  ++..++++++++.|+|||.+++-.
T Consensus       197 DlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        197 DVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             CEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            999999 88777  688999999999999999998864

>PRK04266 fibrillarin; Provisional

Probab=99.39  E-value=4e-12  Score=118.96  Aligned_cols=122  Identities=16%  Similarity=0.210  Sum_probs=86.8

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecc
Q psy11646         14 QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANI   92 (433)
Q Consensus        14 ~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di   92 (433)
                      +...+..++..+ +.+..+++.+|||+|||+|.++ ..++...+.  .+|+|+|+++.|++.+.+++ ...++.++.+|+
T Consensus        54 r~~~~~~ll~~~-~~l~i~~g~~VlD~G~G~G~~~-~~la~~v~~--g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~  129 (226)
T PRK04266         54 RSKLAAAILKGL-KNFPIKKGSKVLYLGAASGTTV-SHVSDIVEE--GVVYAVEFAPRPMRELLEVAEERKNIIPILADA  129 (226)
T ss_pred             ccchHHHHHhhH-hhCCCCCCCEEEEEccCCCHHH-HHHHHhcCC--CeEEEEECCHHHHHHHHHHhhhcCCcEEEECCC
Confidence            344455555555 5677789999999999999999 555655553  39999999999998776665 336789999998


Q ss_pred             cCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         93 ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        93 ~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ..........++||+|++.....  .....++++++++|||||.++++.
T Consensus       130 ~~~~~~~~l~~~~D~i~~d~~~p--~~~~~~L~~~~r~LKpGG~lvI~v  176 (226)
T PRK04266        130 RKPERYAHVVEKVDVIYQDVAQP--NQAEIAIDNAEFFLKDGGYLLLAI  176 (226)
T ss_pred             CCcchhhhccccCCEEEECCCCh--hHHHHHHHHHHHhcCCCcEEEEEE
Confidence            75211111225699999643311  122456899999999999999964

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.38  E-value=4.5e-12  Score=117.80  Aligned_cols=112  Identities=18%  Similarity=0.281  Sum_probs=86.7

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCC
Q psy11646         19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQ   95 (433)
Q Consensus        19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~   95 (433)
                      -.+...+++.+..+++.+|||||||+|..+ ..+++..+.. .+++++|+++.+++.|++++   +..++++..+|....
T Consensus        62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t-~~la~~~~~~-~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~  139 (212)
T PRK13942         62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHA-AVVAEIVGKS-GKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG  139 (212)
T ss_pred             HHHHHHHHHHcCCCCcCEEEEECCcccHHH-HHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC
Confidence            345556666777789999999999999999 5655554332 49999999999999999987   345799999998764


Q ss_pred             cccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         96 NLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        96 ~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ..+.   +.||+|++....++++      ..+.+.|||||++++..
T Consensus       140 ~~~~---~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        140 YEEN---APYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             CCcC---CCcCEEEECCCcccch------HHHHHhhCCCcEEEEEE
Confidence            3332   7899999988766543      35677899999988854

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.38  E-value=6.9e-12  Score=116.41  Aligned_cols=116  Identities=15%  Similarity=0.200  Sum_probs=87.1

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---------------CCCC
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---------------TNPK   84 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---------------~~~~   84 (433)
                      ..+.+++..+...++.+|||+|||.|..+ ..++.   .| .+|+|+|+|+.+++.+.+..               ...+
T Consensus        21 ~~l~~~~~~l~~~~~~rvLd~GCG~G~da-~~LA~---~G-~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (213)
T TIGR03840        21 PLLVKHWPALGLPAGARVFVPLCGKSLDL-AWLAE---QG-HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGN   95 (213)
T ss_pred             HHHHHHHHhhCCCCCCeEEEeCCCchhHH-HHHHh---CC-CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCc
Confidence            44555555554456789999999999999 55552   33 79999999999999864422               1246


Q ss_pred             eEEEEecccCCcccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEec
Q psy11646         85 LEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        85 i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      +++.++|+.+.+..  ..+.||.|+-..+++|++  .....++.+.++|||||++++...
T Consensus        96 v~~~~~D~~~~~~~--~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~  153 (213)
T TIGR03840        96 IEIFCGDFFALTAA--DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL  153 (213)
T ss_pred             eEEEEccCCCCCcc--cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence            88999999775321  126799999999888884  356789999999999998776644

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.37  E-value=3.6e-12  Score=114.02  Aligned_cols=106  Identities=17%  Similarity=0.359  Sum_probs=88.3

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSF  111 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~  111 (433)
                      +|+.||||+|||.|.+. ..|...  ++ .+.+|+|++++.+..+.++    ++.++++|+++. +..+.+++||.|+++
T Consensus        12 ~pgsrVLDLGCGdG~LL-~~L~~~--k~-v~g~GvEid~~~v~~cv~r----Gv~Viq~Dld~g-L~~f~d~sFD~VIls   82 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELL-AYLKDE--KQ-VDGYGVEIDPDNVAACVAR----GVSVIQGDLDEG-LADFPDQSFDYVILS   82 (193)
T ss_pred             CCCCEEEecCCCchHHH-HHHHHh--cC-CeEEEEecCHHHHHHHHHc----CCCEEECCHHHh-HhhCCCCCccEEehH
Confidence            68999999999999998 565543  22 5899999999999999886    788999999875 677778999999999


Q ss_pred             ccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhh
Q psy11646        112 YCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYD  149 (433)
Q Consensus       112 ~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~  149 (433)
                      .++.++.+++.+++++.|+   |...++++++...+..
T Consensus        83 qtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~  117 (193)
T PF07021_consen   83 QTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRN  117 (193)
T ss_pred             hHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHH
Confidence            9999999999999888655   6678888877654433

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.37  E-value=2.9e-12  Score=117.51  Aligned_cols=109  Identities=16%  Similarity=0.290  Sum_probs=83.7

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      ...+|||||||+|.++. .++...|..  .++|+|+++.+++.|+++.   ...+++++++|+..........+++|.|+
T Consensus        16 ~~~~ilDiGcG~G~~~~-~la~~~p~~--~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~   92 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLI-DMAKQNPDK--NFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVF   92 (194)
T ss_pred             CCceEEEeCCCccHHHH-HHHHhCCCC--CEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEE
Confidence            45689999999999994 444555554  8999999999999998876   33589999999976421112236899999


Q ss_pred             EcccccchhhH--------HHHHHHHHHhccCCCEEEEEeccC
Q psy11646        110 SFYCLHWVQDQ--------RQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       110 s~~~l~~~~d~--------~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      ++....|....        ..+++++.++|||||.+++.....
T Consensus        93 ~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~  135 (194)
T TIGR00091        93 LNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE  135 (194)
T ss_pred             EECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence            98876665321        568999999999999998876443

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.37  E-value=1.3e-11  Score=112.40  Aligned_cols=111  Identities=17%  Similarity=0.304  Sum_probs=83.6

Q ss_pred             HHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccc
Q psy11646         25 YIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIF  101 (433)
Q Consensus        25 l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~  101 (433)
                      ++..+...++.+|||+|||+|.++..+ ++..+.  .+++++|+|+.+++.|+++.   ...++++..+|+.. .++   
T Consensus        23 ~~~~l~~~~~~~vLDiG~G~G~~~~~l-a~~~~~--~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~~---   95 (187)
T PRK08287         23 ALSKLELHRAKHLIDVGAGTGSVSIEA-ALQFPS--LQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-ELP---   95 (187)
T ss_pred             HHHhcCCCCCCEEEEECCcCCHHHHHH-HHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hcC---
Confidence            345555567889999999999999444 444444  49999999999999999876   23568888888642 222   


Q ss_pred             cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        102 LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       102 ~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                       ++||+|++....++   ....++.+.+.|+|||.+++.......
T Consensus        96 -~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~~~~~~  136 (187)
T PRK08287         96 -GKADAIFIGGSGGN---LTAIIDWSLAHLHPGGRLVLTFILLEN  136 (187)
T ss_pred             -cCCCEEEECCCccC---HHHHHHHHHHhcCCCeEEEEEEecHhh
Confidence             67999999876554   456788999999999999886544333

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.36  E-value=1.1e-11  Score=112.22  Aligned_cols=115  Identities=23%  Similarity=0.362  Sum_probs=86.1

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      .++.+|||+|||+|.++..+.. .   + .+++++|+|+.|++.|+++.  ...++++..+|+... .    .++||+|+
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~-~---~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~----~~~fD~Vi   87 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKG-K---G-KCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG-V----RGKFDVIL   87 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHh-c---C-CEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc-c----CCcccEEE
Confidence            4567899999999999854443 2   2 38999999999999999987  234677888887553 1    26899999


Q ss_pred             Ecccccchhh---------------------HHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhc
Q psy11646        110 SFYCLHWVQD---------------------QRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSR  156 (433)
Q Consensus       110 s~~~l~~~~d---------------------~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~  156 (433)
                      ++.++++..+                     ....++++.++|+|||.+++.........+....+..
T Consensus        88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~  155 (179)
T TIGR00537        88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDE  155 (179)
T ss_pred             ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHh
Confidence            9988875532                     3567999999999999999887655544444444443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>KOG3674|consensus

Probab=99.36  E-value=9.5e-14  Score=136.69  Aligned_cols=150  Identities=21%  Similarity=0.335  Sum_probs=124.5

Q ss_pred             CCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCC--HHHHHHHHhcccceeEEecCCCC
Q psy11646        200 EKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRN--VVCLETKFQIFFENVSIAKPKSS  277 (433)
Q Consensus       200 ~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~--~~~~~~~l~~~F~~v~~~KP~~s  277 (433)
                      ..+|+|..||+-++.|...-+|.+-..|..+-+..|..+|+.||.||.|+|+-.+  ...+++.+...|+.|+++||.+|
T Consensus       225 gtvdLVTADGS~dcqg~pgeqE~iVssL~~aEV~~AL~~L~~gG~filKmft~fe~cS~~lmylLnc~F~~Vh~fKPatS  304 (696)
T KOG3674|consen  225 GTVDLVTADGSTDCQGKPGEQESIVSSLISAEVEVALKLLRRGGRFILKMFTFFEKCSRDLMYLLNCNFSSVHAFKPATS  304 (696)
T ss_pred             ceEEEEecCCccccCCCCccHHHHHHHHHHHHHHHHHHHHhcCCeehHHHHHHHHHhhHHHHHHHHhhHhhhhccccccC
Confidence            4699999999999999999999999999999999999999999999999999877  57899999999999999999999


Q ss_pred             cccccceeEEEeeccCCCCCCCCccCccccccCccccccccccccCCccCCCcccceeeecCCCCCC------------C
Q psy11646        278 RNSSIESFIVCQNYRPPKDYVPTIMNPFTEITGAQWSDYVSSLSESNKKDVARFISPYHHSKHPISE------------M  345 (433)
Q Consensus       278 r~~s~E~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~  345 (433)
                      |.+++|+||||.+||..+...| |...+--+                 -+.+..+.|.+|.=.++-|            +
T Consensus       305 k~GnSEvYVvCl~yK~~~~l~~-Ll~~m~~~-----------------~~nd~~~~~LF~~~~IP~dFLmqhe~cc~ff~  366 (696)
T KOG3674|consen  305 KPGNSEVYVVCLGYKDHPDLPR-LLGSMNMD-----------------ISNDTLVMPLFAKFQIPHDFLMQHEQCCEFFV  366 (696)
T ss_pred             CCCCceEEEEecccCCCccchh-hhhhhhcc-----------------cccchhhccccccccCchHHHHHHHHHHHHHH
Confidence            9999999999999988764333 22222111                 1244566777777666444            6


Q ss_pred             ccccccCCceeEeeeeeccccc
Q psy11646        346 TALLQSVGFNIHHCDSNTSSYS  367 (433)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~  367 (433)
                      .|++|....+++.++...+.|-
T Consensus       367 k~Q~d~Ie~~i~~fe~~~r~yl  388 (696)
T KOG3674|consen  367 KKQIDRIELHIKTFEEHHRMYL  388 (696)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHH
Confidence            7888888888888888877775

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.35  E-value=1.1e-11  Score=115.64  Aligned_cols=111  Identities=14%  Similarity=0.253  Sum_probs=85.1

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQN   96 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~   96 (433)
                      .....+++.+..+++.+|||||||+|..+ ..+++..+.. .+|+++|+++.+++.|++++   +..++++..+|.....
T Consensus        64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a-~~la~~~~~~-g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~  141 (215)
T TIGR00080        64 HMVAMMTELLELKPGMKVLEIGTGSGYQA-AVLAEIVGRD-GLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW  141 (215)
T ss_pred             HHHHHHHHHhCCCCcCEEEEECCCccHHH-HHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC
Confidence            34455666666788999999999999999 5555554432 37999999999999999987   3467999999987542


Q ss_pred             ccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         97 LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        97 l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ..   .++||+|++.....++      ...+.+.|+|||++++..
T Consensus       142 ~~---~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       142 EP---LAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPV  177 (215)
T ss_pred             cc---cCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence            22   2689999998776554      345788999999988864

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.35  E-value=1.2e-11  Score=123.55  Aligned_cols=115  Identities=21%  Similarity=0.329  Sum_probs=86.4

Q ss_pred             HHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--C----CCCeEEEEecccCCccc
Q psy11646         25 YIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--T----NPKLEFVVANIADQNLE   98 (433)
Q Consensus        25 l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~----~~~i~~~~~Di~~~~l~   98 (433)
                      +++.++...+.+|||+|||+|.++ ..+++..|..  +++++|+|+.|++.|++++  .    ..++++...|..+. .+
T Consensus       220 lL~~lp~~~~~~VLDLGCGtGvi~-i~la~~~P~~--~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~  295 (378)
T PRK15001        220 FMQHLPENLEGEIVDLGCGNGVIG-LTLLDKNPQA--KVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VE  295 (378)
T ss_pred             HHHhCCcccCCeEEEEeccccHHH-HHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CC
Confidence            444554445679999999999999 4555555554  9999999999999999886  1    13678888886543 22


Q ss_pred             ccccCcEeEEEEcccccchh-----hHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQ-----DQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~-----d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                         .++||+|+|+.++|...     ...+++++++++|+|||.++++.....+
T Consensus       296 ---~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~  345 (378)
T PRK15001        296 ---PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLD  345 (378)
T ss_pred             ---CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcC
Confidence               26899999999987542     2457899999999999999998644333

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.35  E-value=1.4e-11  Score=122.20  Aligned_cols=117  Identities=27%  Similarity=0.382  Sum_probs=86.6

Q ss_pred             HhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCc
Q psy11646         27 DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAK  104 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~  104 (433)
                      +.+......+|||+|||+|.++ ..+++..+..  +++++|+|+.|++.|++++  .....++...|+... .    .++
T Consensus       190 ~~l~~~~~g~VLDlGCG~G~ls-~~la~~~p~~--~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~-~----~~~  261 (342)
T PRK09489        190 STLTPHTKGKVLDVGCGAGVLS-AVLARHSPKI--RLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD-I----KGR  261 (342)
T ss_pred             HhccccCCCeEEEeccCcCHHH-HHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc-c----CCC
Confidence            3333344568999999999999 4555555543  8999999999999999887  222345666676432 2    378


Q ss_pred             EeEEEEcccccch-----hhHHHHHHHHHHhccCCCEEEEEeccCCchhhHH
Q psy11646        105 FNKIFSFYCLHWV-----QDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLY  151 (433)
Q Consensus       105 fD~Vis~~~l~~~-----~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~  151 (433)
                      ||+|+++.++|+.     ...+.+++++.+.|+|||.++++....-|.....
T Consensus       262 fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l  313 (342)
T PRK09489        262 FDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLL  313 (342)
T ss_pred             ccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHH
Confidence            9999999999863     3457889999999999999999876655544433

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.32  E-value=3.6e-11  Score=110.56  Aligned_cols=122  Identities=18%  Similarity=0.325  Sum_probs=88.6

Q ss_pred             HHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCcccccc
Q psy11646         26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNLESIF  101 (433)
Q Consensus        26 ~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l~~~~  101 (433)
                      +..+...++.+|||+|||+|.++..++....+.  .+++++|+++.+++.|+++.   + ..++.+..+|..+. ++ ..
T Consensus        33 l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~--~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~-l~-~~  108 (198)
T PRK00377         33 LSKLRLRKGDMILDIGCGTGSVTVEASLLVGET--GKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI-LF-TI  108 (198)
T ss_pred             HHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh-Hh-hc
Confidence            456677889999999999999985544332233  48999999999999999886   3 35788888887653 12 12


Q ss_pred             cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhh
Q psy11646        102 LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKL  154 (433)
Q Consensus       102 ~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~  154 (433)
                      .+.||.|++...   ..+...+++.+.++|+|||++++..............+
T Consensus       109 ~~~~D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l  158 (198)
T PRK00377        109 NEKFDRIFIGGG---SEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSAL  158 (198)
T ss_pred             CCCCCEEEECCC---cccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHH
Confidence            368999999653   34567889999999999999987554444333333333

>PRK14967 putative methyltransferase; Provisional

Probab=99.32  E-value=3.9e-11  Score=112.43  Aligned_cols=127  Identities=17%  Similarity=0.234  Sum_probs=89.2

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNL   97 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l   97 (433)
                      .++...+......++.+|||+|||+|.++.. ++..   +..+++++|+++.+++.|+++.  ...++.+...|+... +
T Consensus        23 ~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~-la~~---~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~   97 (223)
T PRK14967         23 QLLADALAAEGLGPGRRVLDLCTGSGALAVA-AAAA---GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-V   97 (223)
T ss_pred             HHHHHHHHhcccCCCCeEEEecCCHHHHHHH-HHHc---CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-c
Confidence            3444555555567788999999999999844 4432   2248999999999999999876  223577888887653 2


Q ss_pred             cccccCcEeEEEEcccccchh---------------------hHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhh
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQ---------------------DQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKL  154 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~---------------------d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~  154 (433)
                      +   .++||+|+++..++...                     ....+++++.++|||||.+++..............+
T Consensus        98 ~---~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l  172 (223)
T PRK14967         98 E---FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRL  172 (223)
T ss_pred             c---CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHH
Confidence            3   37899999986544321                     135678889999999999998655443333444433

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.31  E-value=1.5e-11  Score=128.14  Aligned_cols=113  Identities=21%  Similarity=0.361  Sum_probs=88.0

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCccccccc
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLESIFL  102 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~~~~  102 (433)
                      .+++.+...++.+|||||||+|.++. .+++.    +.+++|+|+|+.|++.+++.. ...++++.++|+....++ ...
T Consensus        28 ~il~~l~~~~~~~vLDlGcG~G~~~~-~la~~----~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~-~~~  101 (475)
T PLN02336         28 EILSLLPPYEGKSVLELGAGIGRFTG-ELAKK----AGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLN-ISD  101 (475)
T ss_pred             HHHhhcCccCCCEEEEeCCCcCHHHH-HHHhh----CCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccC-CCC
Confidence            34444544567899999999999994 44432    248999999999999887654 346789999998643221 223


Q ss_pred             CcEeEEEEcccccchhh--HHHHHHHHHHhccCCCEEEEEec
Q psy11646        103 AKFNKIFSFYCLHWVQD--QRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ++||+|++..+++|+++  ...+++++.++|||||.+++.+.
T Consensus       102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~  143 (475)
T PLN02336        102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRES  143 (475)
T ss_pred             CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            78999999999999976  57899999999999999988753

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.31  E-value=2.7e-11  Score=115.37  Aligned_cols=102  Identities=24%  Similarity=0.397  Sum_probs=78.6

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHH--hhc-CCC-CeEEEEecccCCcccccccCcEeEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK--NHH-TNP-KLEFVVANIADQNLESIFLAKFNKI  108 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~--~~~-~~~-~i~~~~~Di~~~~l~~~~~~~fD~V  108 (433)
                      .|.+|||||||.|.++..++.    .+...|+|+|.++......+  +++ +.. .+.+.-.-+++.+.    .+.||+|
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~----~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~----~~~FDtV  186 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLG----RGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN----LGAFDTV  186 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhh----cCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc----cCCcCEE
Confidence            588999999999999977765    34358999999987765532  222 322 23333345565443    3789999


Q ss_pred             EEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646        109 FSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       109 is~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      +|.++|+|..++-..+.++++.|+|||.+++-+.
T Consensus       187 F~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETl  220 (315)
T PF08003_consen  187 FSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETL  220 (315)
T ss_pred             EEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEe
Confidence            9999999999999999999999999999998654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.29  E-value=9.3e-11  Score=109.53  Aligned_cols=105  Identities=21%  Similarity=0.336  Sum_probs=80.6

Q ss_pred             HHHHHhcC--CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--C--CCCeEEEEecccCCc
Q psy11646         23 SQYIDQFK--WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--T--NPKLEFVVANIADQN   96 (433)
Q Consensus        23 ~~l~~~l~--~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~--~~~i~~~~~Di~~~~   96 (433)
                      ..+++.+.  ..++.+|||+|||+|.++..+ +..   + .+++|+|+|+.|++.|+++.  .  ..++.+.+.|+...+
T Consensus        43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l-a~~---~-~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~  117 (219)
T TIGR02021        43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIEL-AKR---G-AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC  117 (219)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHH-HHC---C-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC
Confidence            33444443  356889999999999999444 432   2 48999999999999999987  1  147899999987643


Q ss_pred             ccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEE
Q psy11646         97 LESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVL  138 (433)
Q Consensus        97 l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~ll  138 (433)
                            ++||+|++..+++|.+  +...+++++.+++++++.+.
T Consensus       118 ------~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~  155 (219)
T TIGR02021       118 ------GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFT  155 (219)
T ss_pred             ------CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence                  6899999999988764  46788999999998765544

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.29  E-value=4.4e-11  Score=111.44  Aligned_cols=117  Identities=15%  Similarity=0.196  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---------------CC
Q psy11646         18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---------------TN   82 (433)
Q Consensus        18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---------------~~   82 (433)
                      ....|.++...+...++.+|||+|||.|..+ ..|+.   .| .+|+|+|+|+.+++.+.+..               ..
T Consensus        22 p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da-~~LA~---~G-~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~   96 (218)
T PRK13255         22 VNPLLQKYWPALALPAGSRVLVPLCGKSLDM-LWLAE---QG-HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQA   96 (218)
T ss_pred             CCHHHHHHHHhhCCCCCCeEEEeCCCChHhH-HHHHh---CC-CeEEEEccCHHHHHHHHHHcCCCcccccccccccccc
Confidence            3455556666555567789999999999999 55553   33 79999999999999874321               13


Q ss_pred             CCeEEEEecccCCcccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEe
Q psy11646         83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        83 ~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .++++.++|+.+....  ..+.||.|+...++++++  .....++.+.++|+|||++++..
T Consensus        97 ~~v~~~~~D~~~l~~~--~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~  155 (218)
T PRK13255         97 GEITIYCGDFFALTAA--DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVT  155 (218)
T ss_pred             CceEEEECcccCCCcc--cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence            5688999999875322  225899999999988885  45788999999999999755543

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.29  E-value=3.6e-11  Score=118.08  Aligned_cols=112  Identities=15%  Similarity=0.323  Sum_probs=88.5

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcc
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNL   97 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l   97 (433)
                      ...+++.+...++.+|||||||+|.++..+ ++..|..  +++++|. +.+++.++++.    ...+++++.+|+.+.++
T Consensus       138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~-~~~~p~~--~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~  213 (306)
T TIGR02716       138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAM-LKHFPEL--DSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY  213 (306)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCchhHHHHHH-HHHCCCC--EEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC
Confidence            444566666678889999999999999444 4455654  8999997 78999998876    23579999999876443


Q ss_pred             cccccCcEeEEEEcccccchhh--HHHHHHHHHHhccCCCEEEEEec
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQD--QRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      +     .+|+|++..++|+..+  ...+++++++.|+|||++++.+.
T Consensus       214 ~-----~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~  255 (306)
T TIGR02716       214 P-----EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM  255 (306)
T ss_pred             C-----CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            3     3699999999997754  35789999999999999999864

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.27  E-value=4.4e-11  Score=119.16  Aligned_cols=115  Identities=17%  Similarity=0.319  Sum_probs=89.3

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCccccc
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESI  100 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~  100 (433)
                      .+++.+....+..+||||||+|.++ ..++...|..  .++|+|+++.+++.|.++.   +..++.++++|+.... ...
T Consensus       113 ~~~~~~~~~~~p~vLEIGcGsG~~l-l~lA~~~P~~--~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll-~~~  188 (390)
T PRK14121        113 NFLDFISKNQEKILIEIGFGSGRHL-LYQAKNNPNK--LFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLL-ELL  188 (390)
T ss_pred             HHHHHhcCCCCCeEEEEcCcccHHH-HHHHHhCCCC--CEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhh-hhC
Confidence            3455554455779999999999999 4555555654  8999999999999998887   4468999999986531 223


Q ss_pred             ccCcEeEEEEcccccchhhH------HHHHHHHHHhccCCCEEEEEec
Q psy11646        101 FLAKFNKIFSFYCLHWVQDQ------RQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d~------~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      .++++|.|+++....|....      ...+.+++++|+|||.+.+.+-
T Consensus       189 ~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD  236 (390)
T PRK14121        189 PSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD  236 (390)
T ss_pred             CCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence            34899999998887775432      5789999999999999998753

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.26  E-value=2e-10  Score=102.20  Aligned_cols=126  Identities=14%  Similarity=0.260  Sum_probs=101.9

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCccccc
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESI  100 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~  100 (433)
                      -.+..+.+.++.+++|||||+|+.+..++ ...|.+  +++++|-++++++..+++.   +.++++++.+++-+. +++ 
T Consensus        25 l~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~--~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~-L~~-   99 (187)
T COG2242          25 LTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSG--RVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA-LPD-   99 (187)
T ss_pred             HHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCc--eEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh-hcC-
Confidence            35677888999999999999999997776 556665  9999999999999988877   678999999997654 332 


Q ss_pred             ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCC
Q psy11646        101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPK  159 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~  159 (433)
                      . .++|.|+....    .+.+..++.+...|||||++++..............+...+.
T Consensus       100 ~-~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~  153 (187)
T COG2242         100 L-PSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGG  153 (187)
T ss_pred             C-CCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCC
Confidence            1 27999999988    346788999999999999999988777777666666655443

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.25  E-value=1.4e-10  Score=113.54  Aligned_cols=96  Identities=18%  Similarity=0.314  Sum_probs=70.8

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC--------CCCeEEEEecccCCcccccccCc
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT--------NPKLEFVVANIADQNLESIFLAK  104 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~--------~~~i~~~~~Di~~~~l~~~~~~~  104 (433)
                      ++.+|||+|||+|.++..++.    .+ .+|+|+|+|+.|++.|+++..        ..++.|...|+...      +++
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~----~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l------~~~  212 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLAL----EG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL------SGK  212 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHH----CC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc------CCC
Confidence            578999999999999844443    23 589999999999999999862        23577888887542      278


Q ss_pred             EeEEEEcccccchhhH--HHHHHHHHHhccCCCEEEEEe
Q psy11646        105 FNKIFSFYCLHWVQDQ--RQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       105 fD~Vis~~~l~~~~d~--~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ||+|++..+++|.++.  ...++.+.+ +.+||. ++..
T Consensus       213 fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~  249 (315)
T PLN02585        213 YDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL-IISF  249 (315)
T ss_pred             cCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEe
Confidence            9999999999888653  345666664 455554 4444

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.25  E-value=2.8e-11  Score=101.19  Aligned_cols=104  Identities=23%  Similarity=0.371  Sum_probs=80.1

Q ss_pred             CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      |.+|||+|||+|.++..+++ .. .  .+++|+|+++..++.|+.++    ...++++.++|+.+.. +....++||+|+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~-~~-~--~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~D~Iv   75 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALR-RG-A--ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP-EPLPDGKFDLIV   75 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHH-HC-T--CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH-HTCTTT-EEEEE
T ss_pred             CCEEEEcCcchHHHHHHHHH-HC-C--CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch-hhccCceeEEEE
Confidence            56899999999999955544 33 2  59999999999999999998    2367999999997653 223458999999


Q ss_pred             Ecccccchh--------hHHHHHHHHHHhccCCCEEEEEec
Q psy11646        110 SFYCLHWVQ--------DQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       110 s~~~l~~~~--------d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ++..+....        ....+++.+.++|+|||.+++..+
T Consensus        76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            998886431        235779999999999999988653

...

>KOG3010|consensus

Probab=99.25  E-value=1.7e-11  Score=112.15  Aligned_cols=124  Identities=21%  Similarity=0.291  Sum_probs=85.1

Q ss_pred             chhhhhhhhhhcHHHHHHHHHHHHHhcCCCCC-CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC
Q psy11646          3 KATLYETNNSMQQLDAAKLLSQYIDQFKWTDN-ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT   81 (433)
Q Consensus         3 ~a~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~-~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~   81 (433)
                      +++.|...++.....   .+..+...   .++ ..++|+|||+|..+ ..++..    +.+|+|+|+|+.|++.|++...
T Consensus         8 ~a~~Y~~ARP~YPtd---w~~~ia~~---~~~h~~a~DvG~G~Gqa~-~~iae~----~k~VIatD~s~~mL~~a~k~~~   76 (261)
T KOG3010|consen    8 QAADYLNARPSYPTD---WFKKIASR---TEGHRLAWDVGTGNGQAA-RGIAEH----YKEVIATDVSEAMLKVAKKHPP   76 (261)
T ss_pred             cHHHHhhcCCCCcHH---HHHHHHhh---CCCcceEEEeccCCCcch-HHHHHh----hhhheeecCCHHHHHHhhcCCC
Confidence            678888888777633   33333332   222 27999999999665 666643    3589999999999999998861


Q ss_pred             ----CCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCC-EEEEEe
Q psy11646         82 ----NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGG-EVLLLL  141 (433)
Q Consensus        82 ----~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG-~lll~~  141 (433)
                          .....+...+..+  +. ..+++.|+|++..++||+ |.+.++++++|+||+.| .+.+..
T Consensus        77 ~~y~~t~~~ms~~~~v~--L~-g~e~SVDlI~~Aqa~HWF-dle~fy~~~~rvLRk~Gg~iavW~  137 (261)
T KOG3010|consen   77 VTYCHTPSTMSSDEMVD--LL-GGEESVDLITAAQAVHWF-DLERFYKEAYRVLRKDGGLIAVWN  137 (261)
T ss_pred             cccccCCcccccccccc--cc-CCCcceeeehhhhhHHhh-chHHHHHHHHHHcCCCCCEEEEEE
Confidence                1112222222222  11 114899999999999999 67889999999999766 555543

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.25  E-value=1.3e-10  Score=106.75  Aligned_cols=112  Identities=13%  Similarity=0.299  Sum_probs=81.5

Q ss_pred             HHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccc
Q psy11646         25 YIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIF  101 (433)
Q Consensus        25 l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~  101 (433)
                      ++..+...++.+|||+|||+|.++..+ +...+.  .+++++|+|+.+++.|+++.   ...+++++.+|+.+. +.. .
T Consensus        32 l~~~l~~~~~~~VLDiG~G~G~~~~~l-a~~~~~--~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~-~~~-~  106 (196)
T PRK07402         32 LISQLRLEPDSVLWDIGAGTGTIPVEA-GLLCPK--GRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC-LAQ-L  106 (196)
T ss_pred             HHHhcCCCCCCEEEEeCCCCCHHHHHH-HHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH-Hhh-C
Confidence            455556678899999999999998444 433343  49999999999999999876   335789998887542 111 1


Q ss_pred             cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646        102 LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus       102 ~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      ...+|.++...    ..+...+++++.++|+|||.+++......
T Consensus       107 ~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~~~  146 (196)
T PRK07402        107 APAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASSLE  146 (196)
T ss_pred             CCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeecHH
Confidence            13456665532    23467889999999999999998865543

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.23  E-value=1.4e-10  Score=108.41  Aligned_cols=104  Identities=28%  Similarity=0.372  Sum_probs=84.2

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC--C-CCeEEEEecccCCcccccccCcEeEEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT--N-PKLEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~--~-~~i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      .+.+|||+|||+|.++..++. .   + .+++++|+++.+++.++++..  . .++++...|+.+.+..  ..++||+|+
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~-~---~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~i~  117 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLAR-L---G-ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK--GAKSFDVVT  117 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHh-c---C-CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC--CCCCccEEE
Confidence            478999999999999844433 2   2 479999999999999998762  2 2588888887664322  136899999


Q ss_pred             EcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646        110 SFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       110 s~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      +..++++..++..+++++.++|+|||.+++....
T Consensus       118 ~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~  151 (224)
T TIGR01983       118 CMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN  151 (224)
T ss_pred             ehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence            9999999999999999999999999999887654

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.23  E-value=4.6e-11  Score=110.28  Aligned_cols=114  Identities=19%  Similarity=0.359  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccC
Q psy11646         18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIAD   94 (433)
Q Consensus        18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~   94 (433)
                      +-.+...+++.+..+|+.+|||||||+|..+ .+++.+.... ..|+++|+.+..++.|++++   ...++.+.++|...
T Consensus        57 ~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~a-Alla~lvg~~-g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~  134 (209)
T PF01135_consen   57 APSMVARMLEALDLKPGDRVLEIGTGSGYQA-ALLAHLVGPV-GRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE  134 (209)
T ss_dssp             -HHHHHHHHHHTTC-TT-EEEEES-TTSHHH-HHHHHHHSTT-EEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEecCCCcHHH-HHHHHhcCcc-ceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh
Confidence            3355667777888899999999999999999 7777776544 48999999999999999998   45689999999765


Q ss_pred             CcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         95 QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        95 ~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ....   .+.||.|++......++      ..+.+.|++||++++..-
T Consensus       135 g~~~---~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  135 GWPE---EAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             TTGG---G-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred             cccc---CCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEEc
Confidence            4222   27899999998876543      246788999999998653

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.22  E-value=6.2e-11  Score=108.61  Aligned_cols=100  Identities=15%  Similarity=0.304  Sum_probs=76.0

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSF  111 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~  111 (433)
                      +++.+|||+|||+|.++ ..++...   ...++|+|+|+.+++.|+++    ++++.++|+.+. ++...+++||+|+++
T Consensus        12 ~~~~~iLDiGcG~G~~~-~~l~~~~---~~~~~giD~s~~~i~~a~~~----~~~~~~~d~~~~-l~~~~~~sfD~Vi~~   82 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELL-ALLRDEK---QVRGYGIEIDQDGVLACVAR----GVNVIQGDLDEG-LEAFPDKSFDYVILS   82 (194)
T ss_pred             CCCCEEEEeCCCCCHHH-HHHHhcc---CCcEEEEeCCHHHHHHHHHc----CCeEEEEEhhhc-ccccCCCCcCEEEEh
Confidence            46789999999999998 4444322   24789999999999998764    578888998652 211233789999999


Q ss_pred             ccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646        112 YCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       112 ~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      .++||++++..+++++.+.++   .+++..+.
T Consensus        83 ~~l~~~~d~~~~l~e~~r~~~---~~ii~~p~  111 (194)
T TIGR02081        83 QTLQATRNPEEILDEMLRVGR---HAIVSFPN  111 (194)
T ss_pred             hHhHcCcCHHHHHHHHHHhCC---eEEEEcCC
Confidence            999999999999998877655   44555443

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.21  E-value=1.6e-10  Score=107.44  Aligned_cols=108  Identities=13%  Similarity=0.188  Sum_probs=82.4

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcc
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNL   97 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l   97 (433)
                      ....++..+...++.+|||+|||+|..+ ..++...    .+++++|+++.+++.|++++   ...++++..+|.... +
T Consensus        66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t-~~la~~~----~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~  139 (212)
T PRK00312         66 MVARMTELLELKPGDRVLEIGTGSGYQA-AVLAHLV----RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG-W  139 (212)
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCccHHH-HHHHHHh----CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC-C
Confidence            3345556666678999999999999998 4555432    38999999999999999887   335688999987543 2


Q ss_pred             cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      +  ..++||+|++...++++      ...+.+.|+|||.+++...
T Consensus       140 ~--~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        140 P--AYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             C--cCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence            2  12689999998877655      3457889999999988654

>KOG1541|consensus

Probab=99.21  E-value=1e-10  Score=105.54  Aligned_cols=128  Identities=21%  Similarity=0.419  Sum_probs=89.9

Q ss_pred             chhhhhhhhhh---cHHHHHHHHHHHHHhcCCCC--CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHH
Q psy11646          3 KATLYETNNSM---QQLDAAKLLSQYIDQFKWTD--NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK   77 (433)
Q Consensus         3 ~a~~Y~~~~~~---~~~~~~~ll~~l~~~l~~~~--~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~   77 (433)
                      .|..|.+...+   |...+.+.|    +.+.++.  +.-|||||||+|-.+ ..+.    ..++.++|+|||+.|++.|.
T Consensus        19 eA~kYt~nsri~~IQ~em~eRaL----ELLalp~~~~~~iLDIGCGsGLSg-~vL~----~~Gh~wiGvDiSpsML~~a~   89 (270)
T KOG1541|consen   19 EAPKYTQNSRIVLIQAEMAERAL----ELLALPGPKSGLILDIGCGSGLSG-SVLS----DSGHQWIGVDISPSMLEQAV   89 (270)
T ss_pred             hhhhccccceeeeehHHHHHHHH----HHhhCCCCCCcEEEEeccCCCcch-heec----cCCceEEeecCCHHHHHHHH
Confidence            35566665443   444444444    4444443  567999999999998 5554    23379999999999999999


Q ss_pred             hhcCCCCeEEEEecccC-CcccccccCcEeEEEEcccccchh-------h----HHHHHHHHHHhccCCCEEEEEeccC
Q psy11646         78 NHHTNPKLEFVVANIAD-QNLESIFLAKFNKIFSFYCLHWVQ-------D----QRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        78 ~~~~~~~i~~~~~Di~~-~~l~~~~~~~fD~Vis~~~l~~~~-------d----~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      ++-.  .-.++.+|+-+ .|+   ..++||-+|+..++.|+-       +    ...++..++.+|++|++.++.+...
T Consensus        90 ~~e~--egdlil~DMG~Glpf---rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe  163 (270)
T KOG1541|consen   90 EREL--EGDLILCDMGEGLPF---RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE  163 (270)
T ss_pred             Hhhh--hcCeeeeecCCCCCC---CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence            7531  13466777653 333   449999999998888772       2    2356888999999999999987543

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.21  E-value=1.1e-10  Score=113.23  Aligned_cols=120  Identities=15%  Similarity=0.204  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHh-cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEE
Q psy11646         15 QLDAAKLLSQYIDQ-FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVV   89 (433)
Q Consensus        15 ~~~~~~ll~~l~~~-l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~   89 (433)
                      ++....++...+.. +...++.+|||+|||+|.++ ..++...+.  .+++|+|+|+.+++.|++++   + ..++++.+
T Consensus       102 r~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~-~~la~~~~~--~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~  178 (284)
T TIGR03533       102 RSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIA-IACAYAFPE--AEVDAVDISPDALAVAEINIERHGLEDRVTLIQ  178 (284)
T ss_pred             CCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHH-HHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence            33455566655543 32245679999999999999 445544444  49999999999999999987   2 24689999


Q ss_pred             ecccCCcccccccCcEeEEEEcccccch-------------------------hhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         90 ANIADQNLESIFLAKFNKIFSFYCLHWV-------------------------QDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        90 ~Di~~~~l~~~~~~~fD~Vis~~~l~~~-------------------------~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +|+.+. ++   .++||+|+++......                         ......++++.+.|+|||.+++..
T Consensus       179 ~D~~~~-~~---~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~  251 (284)
T TIGR03533       179 SDLFAA-LP---GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV  251 (284)
T ss_pred             Cchhhc-cC---CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            998543 33   2589999998543110                         112566889999999999988754

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.21  E-value=1.4e-10  Score=110.35  Aligned_cols=118  Identities=25%  Similarity=0.366  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecc
Q psy11646         16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANI   92 (433)
Q Consensus        16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di   92 (433)
                      +....++..++..+. ..+.+|||+|||+|..+. .++...+.  .+++|+|+++.+++.|+++.   ...++++..+|+
T Consensus        71 ~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~-~l~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~  146 (251)
T TIGR03534        71 PDTEELVEAALERLK-KGPLRVLDLGTGSGAIAL-ALAKERPD--ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDW  146 (251)
T ss_pred             CChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHH-HHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch
Confidence            345566666666654 345699999999999994 44444444  48999999999999999887   334689999998


Q ss_pred             cCCcccccccCcEeEEEEcccccchh--------------------------hHHHHHHHHHHhccCCCEEEEEe
Q psy11646         93 ADQNLESIFLAKFNKIFSFYCLHWVQ--------------------------DQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        93 ~~~~l~~~~~~~fD~Vis~~~l~~~~--------------------------d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .+. ++   .++||+|+++.++....                          ....+++++.++|+|||.+++..
T Consensus       147 ~~~-~~---~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~  217 (251)
T TIGR03534       147 FEP-LP---GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI  217 (251)
T ss_pred             hcc-Cc---CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            653 33   37899999977654321                          12356889999999999988753

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR03438 probable methyltransferase

Probab=99.20  E-value=2e-10  Score=112.50  Aligned_cols=112  Identities=18%  Similarity=0.247  Sum_probs=78.8

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--C--CCCeEEEEecccCC-cccccc-cCcE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--T--NPKLEFVVANIADQ-NLESIF-LAKF  105 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~--~~~i~~~~~Di~~~-~l~~~~-~~~f  105 (433)
                      .++.+|||+|||+|..+..++. .++.+ .+|+++|+|++|++.|++++  .  ..++.++++|+.+. ++.... .+..
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~-~l~~~-~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~  139 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLD-ALRQP-ARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRR  139 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHH-hhccC-CeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCe
Confidence            4668999999999999955554 33322 58999999999999998876  1  23466789998763 233211 1123


Q ss_pred             eEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646        106 NKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus       106 D~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      .++++..++++++  +...+++++++.|+|||.+++......
T Consensus       140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~  181 (301)
T TIGR03438       140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVK  181 (301)
T ss_pred             EEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence            3455455677664  466789999999999999998654443

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.19  E-value=2.2e-10  Score=109.19  Aligned_cols=125  Identities=17%  Similarity=0.242  Sum_probs=87.6

Q ss_pred             cHHHHHHHHHHHHHhcCC-CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecc
Q psy11646         14 QQLDAAKLLSQYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANI   92 (433)
Q Consensus        14 ~~~~~~~ll~~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di   92 (433)
                      .++.++.+++.++..+.. .++.+|||+|||+|.++..+ +...+.  .+++|+|+|+.+++.|++++...++++.++|+
T Consensus        66 pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~l-a~~~~~--~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~  142 (251)
T TIGR03704        66 PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAAL-AAALDG--IELHAADIDPAAVRCARRNLADAGGTVHEGDL  142 (251)
T ss_pred             CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHH-HHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCEEEEeec
Confidence            345666777766665432 23468999999999999444 433333  48999999999999999987333468888998


Q ss_pred             cCCcccccccCcEeEEEEcccccchh--------------------------hHHHHHHHHHHhccCCCEEEEEec
Q psy11646         93 ADQNLESIFLAKFNKIFSFYCLHWVQ--------------------------DQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        93 ~~~~l~~~~~~~fD~Vis~~~l~~~~--------------------------d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      .+. ++....++||+|+++.......                          -....+..+.++|+|||.+++...
T Consensus       143 ~~~-l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~  217 (251)
T TIGR03704       143 YDA-LPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS  217 (251)
T ss_pred             hhh-cchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            653 2221236799999987653110                          124677788899999999987653

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.19  E-value=5.4e-10  Score=104.87  Aligned_cols=94  Identities=22%  Similarity=0.397  Sum_probs=72.0

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC---C-CCeEEEEecccCCcccccccCcEe
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT---N-PKLEFVVANIADQNLESIFLAKFN  106 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~---~-~~i~~~~~Di~~~~l~~~~~~~fD  106 (433)
                      ..++.+|||||||+|.++..++. .   + .+|+|+|+|+.|++.|+++..   . .++++..+|+..   .   .++||
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~-~---~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~---~~~fD  129 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLAR-R---G-AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---L---LGRFD  129 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHH-c---C-CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---c---cCCcC
Confidence            35678999999999999854443 2   2 479999999999999999871   1 478899888543   1   27899


Q ss_pred             EEEEcccccchh--hHHHHHHHHHHhccCCC
Q psy11646        107 KIFSFYCLHWVQ--DQRQAISNIYNLLMPGG  135 (433)
Q Consensus       107 ~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG  135 (433)
                      +|++..+++|.+  +...+++++.+.+++++
T Consensus       130 ~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~  160 (230)
T PRK07580        130 TVVCLDVLIHYPQEDAARMLAHLASLTRGSL  160 (230)
T ss_pred             EEEEcchhhcCCHHHHHHHHHHHHhhcCCeE
Confidence            999999998764  45678888888765443

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.18  E-value=4.1e-10  Score=109.60  Aligned_cols=109  Identities=20%  Similarity=0.335  Sum_probs=77.8

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC----CCCeEEEEecccCCcccccccCcEeE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----NPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~----~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      .++.+|||+|||+|.++.. ++.. +  ..+++|+|+++.+++.|+++..    ..++.+...+...  .   ..++||+
T Consensus       158 ~~g~~VLDvGcGsG~lai~-aa~~-g--~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~---~~~~fDl  228 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIA-ALKL-G--AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--P---IEGKADV  228 (288)
T ss_pred             CCCCEEEEeCCChhHHHHH-HHHc-C--CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--c---cCCCceE
Confidence            4688999999999999844 3332 2  2489999999999999999872    1234445444221  1   2378999


Q ss_pred             EEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHH
Q psy11646        108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYE  152 (433)
Q Consensus       108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~  152 (433)
                      |+++...+.   ...++.++.++|||||.++++.........+..
T Consensus       229 Vvan~~~~~---l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~  270 (288)
T TIGR00406       229 IVANILAEV---IKELYPQFSRLVKPGGWLILSGILETQAQSVCD  270 (288)
T ss_pred             EEEecCHHH---HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHH
Confidence            999876443   457889999999999999998765444333333

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.18  E-value=2.1e-10  Score=110.78  Aligned_cols=118  Identities=23%  Similarity=0.339  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecc
Q psy11646         16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANI   92 (433)
Q Consensus        16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di   92 (433)
                      +..+.+++.+.......++.+|||+|||+|..+. .++...+.  .+++|+|+|+.+++.|+++.   ...++.+..+|+
T Consensus        91 ~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~-~la~~~~~--~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~  167 (275)
T PRK09328         91 PETEELVEWALEALLLKEPLRVLDLGTGSGAIAL-ALAKERPD--AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW  167 (275)
T ss_pred             CCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHH-HHHHHCCC--CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc
Confidence            3445566666655555678899999999999984 44444444  49999999999999999986   235789999998


Q ss_pred             cCCcccccccCcEeEEEEcccccch--------------------------hhHHHHHHHHHHhccCCCEEEEE
Q psy11646         93 ADQNLESIFLAKFNKIFSFYCLHWV--------------------------QDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        93 ~~~~l~~~~~~~fD~Vis~~~l~~~--------------------------~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      ... +.   .++||+|+++..+...                          .....+++++.++|+|||.+++.
T Consensus       168 ~~~-~~---~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e  237 (275)
T PRK09328        168 FEP-LP---GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE  237 (275)
T ss_pred             cCc-CC---CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence            543 22   3789999997654211                          12356788888999999998874

>KOG1271|consensus

Probab=99.18  E-value=3.3e-10  Score=99.35  Aligned_cols=103  Identities=23%  Similarity=0.370  Sum_probs=79.1

Q ss_pred             CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC-CCeEEEEecccCCcccccccCcEeEEE
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN-PKLEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~-~~i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      ..+|||+|||.|.++..++..-++   ..++|+|.|+.+++.|+..+   .. ..|+|.++||.+..   +..++||+|+
T Consensus        68 A~~VlDLGtGNG~~L~~L~~egf~---~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~---~~~~qfdlvl  141 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEGFQ---SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD---FLSGQFDLVL  141 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhcCC---CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc---ccccceeEEe
Confidence            349999999999999776664443   25999999999999998877   22 34999999998753   3348999999


Q ss_pred             Ecccccchh--------hHHHHHHHHHHhccCCCEEEEEec
Q psy11646        110 SFYCLHWVQ--------DQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       110 s~~~l~~~~--------d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      --..+..+.        .+...+..+.++|+|||+++++..
T Consensus       142 DKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC  182 (227)
T KOG1271|consen  142 DKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC  182 (227)
T ss_pred             ecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec
Confidence            877665441        123457888999999999998753

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.18  E-value=1.3e-10  Score=108.62  Aligned_cols=106  Identities=23%  Similarity=0.380  Sum_probs=85.6

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      ....+|||+|||+|..+ .+++...+.  .+++|+|+++.+.+.|+++.    ...++++++.|+.... ......+||+
T Consensus        43 ~~~~~IlDlGaG~G~l~-L~la~r~~~--a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~-~~~~~~~fD~  118 (248)
T COG4123          43 PKKGRILDLGAGNGALG-LLLAQRTEK--AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL-KALVFASFDL  118 (248)
T ss_pred             ccCCeEEEecCCcCHHH-HHHhccCCC--CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh-hcccccccCE
Confidence            45789999999999999 666666555  49999999999999999988    4578999999998753 2233357999


Q ss_pred             EEEcccccchh------------------hHHHHHHHHHHhccCCCEEEEEe
Q psy11646        108 IFSFYCLHWVQ------------------DQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       108 Vis~~~l~~~~------------------d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |+|+..++-..                  +.+..++...++|||||.+.++.
T Consensus       119 Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~  170 (248)
T COG4123         119 IICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH  170 (248)
T ss_pred             EEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence            99998765321                  35678899999999999998874

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=2.3e-10  Score=104.02  Aligned_cols=108  Identities=15%  Similarity=0.315  Sum_probs=88.3

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQN   96 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~   96 (433)
                      .....+++.+..+++.+|||||||+|..+ .++++...    +|+.+|+.++..+.|++++   +..++.+.++|-....
T Consensus        59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~a-Avla~l~~----~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~  133 (209)
T COG2518          59 HMVARMLQLLELKPGDRVLEIGTGSGYQA-AVLARLVG----RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGW  133 (209)
T ss_pred             HHHHHHHHHhCCCCCCeEEEECCCchHHH-HHHHHHhC----eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCC
Confidence            44556777778899999999999999999 77775532    8999999999999999988   5567999999987653


Q ss_pred             ccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         97 LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        97 l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .+.   ..||.|+...+...++.      .+.+.|||||++++-.
T Consensus       134 ~~~---aPyD~I~Vtaaa~~vP~------~Ll~QL~~gGrlv~Pv  169 (209)
T COG2518         134 PEE---APYDRIIVTAAAPEVPE------ALLDQLKPGGRLVIPV  169 (209)
T ss_pred             CCC---CCcCEEEEeeccCCCCH------HHHHhcccCCEEEEEE
Confidence            333   78999999988776653      3568999999999865

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.17  E-value=2.4e-10  Score=114.67  Aligned_cols=120  Identities=21%  Similarity=0.272  Sum_probs=87.3

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEec
Q psy11646         14 QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVAN   91 (433)
Q Consensus        14 ~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~D   91 (433)
                      -|+.++.+++.++..+  .++.+|||+|||+|..+. .++...+.  .+++|+|+|+.|++.|+++.  ...++++.++|
T Consensus       234 PRpeTE~LVe~aL~~l--~~~~rVLDLGcGSG~Iai-aLA~~~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gD  308 (423)
T PRK14966        234 PRPETEHLVEAVLARL--PENGRVWDLGTGSGAVAV-TVALERPD--AFVRASDISPPALETARKNAADLGARVEFAHGS  308 (423)
T ss_pred             CCccHHHHHHHhhhcc--CCCCEEEEEeChhhHHHH-HHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcc
Confidence            4566777887777665  356699999999999984 44433343  48999999999999999987  33478999999


Q ss_pred             ccCCcccccccCcEeEEEEcccccchh-------------------------hHHHHHHHHHHhccCCCEEEEE
Q psy11646         92 IADQNLESIFLAKFNKIFSFYCLHWVQ-------------------------DQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        92 i~~~~l~~~~~~~fD~Vis~~~l~~~~-------------------------d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +.+...+  ..++||+|+|+.......                         -....++.+.+.|+|||.+++.
T Consensus       309 l~e~~l~--~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE  380 (423)
T PRK14966        309 WFDTDMP--SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE  380 (423)
T ss_pred             hhccccc--cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            8653222  125799999988642110                         1235677778899999998764

>KOG3673|consensus

Probab=99.17  E-value=6.7e-11  Score=118.07  Aligned_cols=114  Identities=28%  Similarity=0.483  Sum_probs=103.6

Q ss_pred             EccccccchHHHHHHhc----CCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCC--
Q psy11646        181 QGDITKESTIKEIFSHF----DDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRN--  254 (433)
Q Consensus       181 qgDi~~~~t~~~il~~~----~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~--  254 (433)
                      .|||+++.....+..+.    .+.++.+.+.||.-.+-|..++++.++-+|.+..+-+|..++++||+|+||+|.-..  
T Consensus       328 dGdi~dp~Nidsl~~~i~~~T~~~GVHf~MADGGFSVEGQeNiQEILSKqLyLCQfL~aL~IvR~gG~F~CK~FDlFTPF  407 (845)
T KOG3673|consen  328 DGDIMDPVNIDSLEAHISRGTSGLGVHFMMADGGFSVEGQENIQEILSKQLYLCQFLVALCIVREGGNFFCKLFDLFTPF  407 (845)
T ss_pred             CCCcCCccchHHHHHHHhcCCCCcceEEEEecCCccccchhhHHHHHHHHHHHHHHHHHheeeecCCeEEEeeecccCcc
Confidence            46888888777776654    457899999999999999999999999999999999999999999999999998876  


Q ss_pred             HHHHHHHHhcccceeEEecCCCCcccccceeEEEeeccCC
Q psy11646        255 VVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPP  294 (433)
Q Consensus       255 ~~~~~~~l~~~F~~v~~~KP~~sr~~s~E~~~v~~~~~~~  294 (433)
                      ..-|++.|..+|+.|.+.||-+||+.++|.|+||.+.+..
T Consensus       408 SVGLvYLmy~Cfq~v~l~KP~tSRPANSERYivCKglr~~  447 (845)
T KOG3673|consen  408 SVGLVYLMYVCFQSVSLHKPHTSRPANSERYIVCKGLRKE  447 (845)
T ss_pred             hhhHHHHHHHHHHHhhcccCCCCCCCCCceeEEecchhhh
Confidence            5678899999999999999999999999999999998754

>PRK14968 putative methyltransferase; Provisional

Probab=99.16  E-value=6.4e-10  Score=100.83  Aligned_cols=104  Identities=25%  Similarity=0.392  Sum_probs=78.6

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCC--eEEEEecccCCcccccccCcEe
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPK--LEFVVANIADQNLESIFLAKFN  106 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~--i~~~~~Di~~~~l~~~~~~~fD  106 (433)
                      .++.+|||+|||+|..+..++. .   + .+++|+|+|+.+++.++++.   ...+  +.+.+.|+.+. +.+   .+||
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~-~---~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~---~~~d   92 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAK-N---G-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRG---DKFD   92 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHh-h---c-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccc---cCce
Confidence            5678999999999999855443 2   2 59999999999999998876   2122  88888887653 332   5899


Q ss_pred             EEEEcccccch---------------------hhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646        107 KIFSFYCLHWV---------------------QDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       107 ~Vis~~~l~~~---------------------~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      +|+++..+...                     .....+++++.++|+|||.+++.....
T Consensus        93 ~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~  151 (188)
T PRK14968         93 VILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL  151 (188)
T ss_pred             EEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence            99998765431                     124567999999999999988876543

>PTZ00146 fibrillarin; Provisional

Probab=99.16  E-value=2.6e-10  Score=109.41  Aligned_cols=128  Identities=14%  Similarity=0.200  Sum_probs=84.6

Q ss_pred             hhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCe
Q psy11646          7 YETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKL   85 (433)
Q Consensus         7 Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i   85 (433)
                      |...++.+...+..++.- ++.+.++++.+|||+|||+|.++ ..++...... ..|+++|+|+.|++...+.. ...++
T Consensus       107 yR~w~p~rSKlaa~i~~g-~~~l~IkpG~~VLDLGaG~G~~t-~~lAdiVG~~-G~VyAVD~s~r~~~dLl~~ak~r~NI  183 (293)
T PTZ00146        107 YRVWNPFRSKLAAAIIGG-VANIPIKPGSKVLYLGAASGTTV-SHVSDLVGPE-GVVYAVEFSHRSGRDLTNMAKKRPNI  183 (293)
T ss_pred             eeeeCCcccHHHHHHHCC-cceeccCCCCEEEEeCCcCCHHH-HHHHHHhCCC-CEEEEEECcHHHHHHHHHHhhhcCCC
Confidence            444555554433333322 34455688999999999999999 4555554322 38999999987543333332 22688


Q ss_pred             EEEEecccCCc-ccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646         86 EFVVANIADQN-LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        86 ~~~~~Di~~~~-l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      .++..|+.... +. ...++||+|++....  ..+...++.++.++|||||.+++.
T Consensus       184 ~~I~~Da~~p~~y~-~~~~~vDvV~~Dva~--pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        184 VPIIEDARYPQKYR-MLVPMVDVIFADVAQ--PDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             EEEECCccChhhhh-cccCCCCEEEEeCCC--cchHHHHHHHHHHhccCCCEEEEE
Confidence            99999986421 11 122579999997752  223445677999999999999985

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.16  E-value=1.9e-10  Score=113.31  Aligned_cols=124  Identities=27%  Similarity=0.430  Sum_probs=85.7

Q ss_pred             HHHHHHHHhcCCC-CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----C-----C----CCe
Q psy11646         20 KLLSQYIDQFKWT-DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----T-----N----PKL   85 (433)
Q Consensus        20 ~ll~~l~~~l~~~-~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~-----~----~~i   85 (433)
                      .++..++..+... ++.+|||+|||-|..+..+...    +...++|+|++...++.|++++    .     .    -..
T Consensus        48 ~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~----~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a  123 (331)
T PF03291_consen   48 VLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKA----KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIA  123 (331)
T ss_dssp             HHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHT----T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEE
T ss_pred             HHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhc----CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchh
Confidence            4455555544322 6889999999999887666653    2359999999999999999998    1     1    134


Q ss_pred             EEEEecccCCcccc-ccc--CcEeEEEEcccccch----hhHHHHHHHHHHhccCCCEEEEEeccCCch
Q psy11646         86 EFVVANIADQNLES-IFL--AKFNKIFSFYCLHWV----QDQRQAISNIYNLLMPGGEVLLLLNAFNPI  147 (433)
Q Consensus        86 ~~~~~Di~~~~l~~-~~~--~~fD~Vis~~~l~~~----~d~~~~l~~i~~~LkpGG~lll~~~~~~p~  147 (433)
                      .|+.+|.....+.+ ...  .+||+|-|..++|+.    +..+.+++++.+.|+|||+++.+++....+
T Consensus       124 ~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i  192 (331)
T PF03291_consen  124 EFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI  192 (331)
T ss_dssp             EEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred             heeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence            56777765543333 222  489999999999987    235668999999999999999988766554

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=5e-10  Score=106.93  Aligned_cols=121  Identities=25%  Similarity=0.362  Sum_probs=91.2

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC---CCCeEEEEecccCCccccc
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT---NPKLEFVVANIADQNLESI  100 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~---~~~i~~~~~Di~~~~l~~~  100 (433)
                      .+++.+....+.+|||+|||.|.++ ..+++..|..  +++.+|++..+++.|+++..   ..+..+...|+-+. ..  
T Consensus       149 lLl~~l~~~~~~~vlDlGCG~Gvlg-~~la~~~p~~--~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~-v~--  222 (300)
T COG2813         149 LLLETLPPDLGGKVLDLGCGYGVLG-LVLAKKSPQA--KLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP-VE--  222 (300)
T ss_pred             HHHHhCCccCCCcEEEeCCCccHHH-HHHHHhCCCC--eEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-cc--
Confidence            4566666666679999999999999 5666666654  99999999999999999982   23334566665432 22  


Q ss_pred             ccCcEeEEEEcccccchhh-----HHHHHHHHHHhccCCCEEEEEeccCCchhhHHH
Q psy11646        101 FLAKFNKIFSFYCLHWVQD-----QRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYE  152 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d-----~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~  152 (433)
                        ++||+|+||..+|.=.+     -.+.+....+.|++||.|.++..+.-+....+.
T Consensus       223 --~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~  277 (300)
T COG2813         223 --GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLK  277 (300)
T ss_pred             --ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHH
Confidence              58999999999995432     236899999999999999998875555444443

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.16  E-value=4.4e-10  Score=111.53  Aligned_cols=115  Identities=16%  Similarity=0.165  Sum_probs=87.8

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCccccc
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESI  100 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~  100 (433)
                      .++....++++.+|||+|||+|.++.....    .+ .+++|+|+++.|++.|++++   +..++.+.++|+.+.++.. 
T Consensus       173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~----~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~-  246 (329)
T TIGR01177       173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGL----MG-AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSS-  246 (329)
T ss_pred             HHHHHhCCCCcCEEEECCCCCCHHHHHHHH----hC-CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCccc-
Confidence            444455667899999999999998854332    12 58999999999999999887   3345789999998866543 


Q ss_pred             ccCcEeEEEEcccccc--------h-hhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        101 FLAKFNKIFSFYCLHW--------V-QDQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~--------~-~d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                        ++||.|+++.++..        . .-...++.++.++|+|||++++..+....
T Consensus       247 --~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~  299 (329)
T TIGR01177       247 --ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRID  299 (329)
T ss_pred             --CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCC
Confidence              78999999865421        1 12478899999999999999988765543

This family is found exclusively in the Archaea.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.16  E-value=3.3e-10  Score=105.39  Aligned_cols=120  Identities=17%  Similarity=0.196  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhh---------------cCC
Q psy11646         18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH---------------HTN   82 (433)
Q Consensus        18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~---------------~~~   82 (433)
                      ....|.+....+...++.+||..|||.|..+ .+|+.   .| .+|+|+|+|+.+++.+.+.               +..
T Consensus        28 pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~-~~LA~---~G-~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~  102 (226)
T PRK13256         28 PNEFLVKHFSKLNINDSSVCLIPMCGCSIDM-LFFLS---KG-VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKG  102 (226)
T ss_pred             CCHHHHHHHHhcCCCCCCeEEEeCCCChHHH-HHHHh---CC-CcEEEEecCHHHHHHHHHHcCCCcceecccccceecc
Confidence            3455555566665556789999999999998 56653   34 6899999999999998652               123


Q ss_pred             CCeEEEEecccCCcccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEec
Q psy11646         83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        83 ~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      .++++.++|+.+.+......+.||.|+-..++++++  ...+..+.+.++|+|||.+++...
T Consensus       103 ~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~  164 (226)
T PRK13256        103 DDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM  164 (226)
T ss_pred             CceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence            578999999988643222236899999999998885  356789999999999999888764

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.15  E-value=2.4e-10  Score=111.94  Aligned_cols=119  Identities=14%  Similarity=0.209  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHh-cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEe
Q psy11646         16 LDAAKLLSQYIDQ-FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVA   90 (433)
Q Consensus        16 ~~~~~ll~~l~~~-l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~   90 (433)
                      +....++...+.. +...++.+|||+|||+|.++. .++...+.  .+++++|+|+.+++.|++++   + ..++++.++
T Consensus       115 ~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai-~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~  191 (307)
T PRK11805        115 SPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAI-ACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIES  191 (307)
T ss_pred             CchHHHHHHHHHHHhccCCCCEEEEEechhhHHHH-HHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEEC
Confidence            3455555555543 222223689999999999984 44444444  49999999999999999987   2 246999999


Q ss_pred             cccCCcccccccCcEeEEEEcccccc-------------h------------hhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         91 NIADQNLESIFLAKFNKIFSFYCLHW-------------V------------QDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        91 Di~~~~l~~~~~~~fD~Vis~~~l~~-------------~------------~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |+.+. ++.   ++||+|+++.....             -            ......++++.+.|+|||.+++..
T Consensus       192 D~~~~-l~~---~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~  263 (307)
T PRK11805        192 DLFAA-LPG---RRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV  263 (307)
T ss_pred             chhhh-CCC---CCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            97543 332   58999999853311             0            113567899999999999988753

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.15  E-value=3e-10  Score=110.38  Aligned_cols=121  Identities=21%  Similarity=0.334  Sum_probs=87.0

Q ss_pred             cHHHHHHHHHHHHHhcC-CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC-CCeEEE
Q psy11646         14 QQLDAAKLLSQYIDQFK-WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN-PKLEFV   88 (433)
Q Consensus        14 ~~~~~~~ll~~l~~~l~-~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~-~~i~~~   88 (433)
                      -|+.++.+++..+..+. ..+..+|||+|||+|..+. .++...+.  .+++|+|+|+.+++.|+++.   .. .++++.
T Consensus        94 Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l-~la~~~~~--~~v~avDis~~al~~a~~n~~~~~~~~~v~~~  170 (284)
T TIGR00536        94 PRPETEELVEKALASLISQNPILHILDLGTGSGCIAL-ALAYEFPN--AEVIAVDISPDALAVAEENAEKNQLEHRVEFI  170 (284)
T ss_pred             CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHH-HHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence            34556677777665543 2333799999999999984 44544443  48999999999999999987   22 358999


Q ss_pred             EecccCCcccccccCcEeEEEEccccc-------------ch------------hhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         89 VANIADQNLESIFLAKFNKIFSFYCLH-------------WV------------QDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        89 ~~Di~~~~l~~~~~~~fD~Vis~~~l~-------------~~------------~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ++|+.+. ++.   .+||+|+++....             |.            ......+.++.+.|+|||.+++..
T Consensus       171 ~~d~~~~-~~~---~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~  244 (284)
T TIGR00536       171 QSNLFEP-LAG---QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI  244 (284)
T ss_pred             ECchhcc-CcC---CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            9998653 332   4899999974321             11            134567889999999999988754

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.13  E-value=6.4e-10  Score=106.06  Aligned_cols=117  Identities=19%  Similarity=0.225  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccC
Q psy11646         15 QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD   94 (433)
Q Consensus        15 ~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~   94 (433)
                      ++.+...++.+....  .++.+|||+|||+|..+. .+++. ..  .+++|+|+|+.+++.|+++....++.- ...+  
T Consensus       103 h~tt~~~l~~l~~~~--~~~~~VLDiGcGsG~l~i-~~~~~-g~--~~v~giDis~~~l~~A~~n~~~~~~~~-~~~~--  173 (250)
T PRK00517        103 HPTTRLCLEALEKLV--LPGKTVLDVGCGSGILAI-AAAKL-GA--KKVLAVDIDPQAVEAARENAELNGVEL-NVYL--  173 (250)
T ss_pred             CHHHHHHHHHHHhhc--CCCCEEEEeCCcHHHHHH-HHHHc-CC--CeEEEEECCHHHHHHHHHHHHHcCCCc-eEEE--
Confidence            334444555444332  578899999999998884 44432 22  369999999999999999872222210 0011  


Q ss_pred             CcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCch
Q psy11646         95 QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPI  147 (433)
Q Consensus        95 ~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~  147 (433)
                         .. .+.+||+|+++...+   .....+.++.++|||||.+++........
T Consensus       174 ---~~-~~~~fD~Vvani~~~---~~~~l~~~~~~~LkpgG~lilsgi~~~~~  219 (250)
T PRK00517        174 ---PQ-GDLKADVIVANILAN---PLLELAPDLARLLKPGGRLILSGILEEQA  219 (250)
T ss_pred             ---cc-CCCCcCEEEEcCcHH---HHHHHHHHHHHhcCCCcEEEEEECcHhhH
Confidence               11 012799999976533   24567899999999999999986554433

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.13  E-value=4.3e-10  Score=110.44  Aligned_cols=111  Identities=19%  Similarity=0.258  Sum_probs=82.7

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQN   96 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~   96 (433)
                      .++..+++.+..+++.+|||||||+|.++ ..+++..+.. .+|+++|+++.+++.|+++.   +..++.++++|+....
T Consensus        67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a-~~LA~~~~~~-g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~  144 (322)
T PRK13943         67 SLMALFMEWVGLDKGMRVLEIGGGTGYNA-AVMSRVVGEK-GLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV  144 (322)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeCCccHHH-HHHHHhcCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc
Confidence            34555666666778899999999999999 4555444332 37999999999999999876   3457889999976543


Q ss_pred             ccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         97 LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        97 l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ...   ++||+|++...+..++      ..+.+.|+|||.+++..
T Consensus       145 ~~~---~~fD~Ii~~~g~~~ip------~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        145 PEF---APYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             ccc---CCccEEEECCchHHhH------HHHHHhcCCCCEEEEEe
Confidence            222   5799999987665442      24678999999988754

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.12  E-value=8.5e-10  Score=88.31  Aligned_cols=99  Identities=28%  Similarity=0.431  Sum_probs=79.7

Q ss_pred             EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEEEEcc
Q psy11646         36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKIFSFY  112 (433)
Q Consensus        36 ~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~  112 (433)
                      +|+|+|||+|..+..++.  .+  ..+++++|+++.++..+++..   ...++.+...|+.+...  ...++||+|++..
T Consensus         1 ~ildig~G~G~~~~~~~~--~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~i~~~~   74 (107)
T cd02440           1 RVLDLGCGTGALALALAS--GP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP--EADESFDVIISDP   74 (107)
T ss_pred             CeEEEcCCccHHHHHHhc--CC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc--ccCCceEEEEEcc
Confidence            589999999999854443  22  259999999999999998332   44678899998876532  1237899999999


Q ss_pred             cccc-hhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        113 CLHW-VQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       113 ~l~~-~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      ++++ .......++.+.+.|+|||.+++.
T Consensus        75 ~~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          75 PLHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             ceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            9998 778889999999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK00811 spermidine synthase; Provisional

Probab=99.11  E-value=1.5e-09  Score=105.38  Aligned_cols=105  Identities=16%  Similarity=0.203  Sum_probs=78.4

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--------CCCCeEEEEecccCCccccccc
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--------TNPKLEFVVANIADQNLESIFL  102 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--------~~~~i~~~~~Di~~~~l~~~~~  102 (433)
                      ++.+.+||+||||+|..+..+++ ..  +..+|+++|+++.+++.|++.+        ..++++++.+|.... +.. ..
T Consensus        74 ~~~p~~VL~iG~G~G~~~~~~l~-~~--~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~-l~~-~~  148 (283)
T PRK00811         74 HPNPKRVLIIGGGDGGTLREVLK-HP--SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKF-VAE-TE  148 (283)
T ss_pred             CCCCCEEEEEecCchHHHHHHHc-CC--CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHH-Hhh-CC
Confidence            34577999999999999966654 21  2258999999999999999876        246899999998653 221 23


Q ss_pred             CcEeEEEEcccccchhh----HHHHHHHHHHhccCCCEEEEE
Q psy11646        103 AKFNKIFSFYCLHWVQD----QRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~~d----~~~~l~~i~~~LkpGG~lll~  140 (433)
                      ++||+|++...-.+...    ...+++.+++.|+|||.+++.
T Consensus       149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        149 NSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             CcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            78999999654332211    256789999999999998764

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=1e-09  Score=101.95  Aligned_cols=123  Identities=16%  Similarity=0.320  Sum_probs=100.6

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCcccc
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNLES   99 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l~~   99 (433)
                      .++..+...||.+|||.|.|+|.++..++....+.+  +|+..|+-++.++.|++++   + ..++.+...|+.+...+ 
T Consensus        85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G--~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~-  161 (256)
T COG2519          85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEG--HVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE-  161 (256)
T ss_pred             HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCc--eEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc-
Confidence            456677789999999999999999944443344445  9999999999999999998   2 24488999998876433 


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcC
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRK  157 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~  157 (433)
                         ..||.|+.     .++++..++..+.+.|+|||.+++..++.+.+...+..+...
T Consensus       162 ---~~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~  211 (256)
T COG2519         162 ---EDVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRER  211 (256)
T ss_pred             ---cccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc
Confidence               58999987     567899999999999999999999888888777777777654

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.10  E-value=5.9e-10  Score=104.06  Aligned_cols=149  Identities=21%  Similarity=0.311  Sum_probs=99.1

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcc
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFY  112 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~  112 (433)
                      ...++||||+|.|..+ .-+++.+    .+|+++|.|+.|....+++    +.+  +.++.+..-.   +.+||+|.|.+
T Consensus        94 ~~~~lLDlGAGdG~VT-~~l~~~f----~~v~aTE~S~~Mr~rL~~k----g~~--vl~~~~w~~~---~~~fDvIscLN  159 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVT-ERLAPLF----KEVYATEASPPMRWRLSKK----GFT--VLDIDDWQQT---DFKFDVISCLN  159 (265)
T ss_pred             cCCceEEecCCCcHHH-HHHHhhc----ceEEeecCCHHHHHHHHhC----CCe--EEehhhhhcc---CCceEEEeehh
Confidence            3568999999999999 5556443    4899999999998888775    333  3344332211   26899999999


Q ss_pred             cccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCcccccccee-eeeccccCceEEEccccccchHH
Q psy11646        113 CLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRT-YRCLLFTGVIQVQGDITKESTIK  191 (433)
Q Consensus       113 ~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~-~~m~pl~gv~~iqgDi~~~~t~~  191 (433)
                      +|....++...++.+++.|+|+|+++++..               -+|.+|..... ....|.+- -.+.+ -+-++...
T Consensus       160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvV---------------lP~~pyVE~~~g~~~~P~e~-l~~~g-~~~E~~v~  222 (265)
T PF05219_consen  160 VLDRCDRPLTLLRDIRRALKPNGRLILAVV---------------LPFRPYVEFGGGKSNRPSEL-LPVKG-ATFEEQVS  222 (265)
T ss_pred             hhhccCCHHHHHHHHHHHhCCCCEEEEEEE---------------ecccccEEcCCCCCCCchhh-cCCCC-CcHHHHHH
Confidence            999999999999999999999999999753               22333332211 11111111 11112 11122344


Q ss_pred             HHHHhcCCCCCeEEEecCCCC
Q psy11646        192 EIFSHFDDEKVDLVVFDGAPD  212 (433)
Q Consensus       192 ~il~~~~~~~~dlVvsD~ap~  212 (433)
                      .+...+.-.+|.++.-.-+|-
T Consensus       223 ~l~~v~~p~GF~v~~~tr~PY  243 (265)
T PF05219_consen  223 SLVNVFEPAGFEVERWTRLPY  243 (265)
T ss_pred             HHHHHHHhcCCEEEEEeccCc
Confidence            445677788899987777774

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.10  E-value=3.4e-11  Score=109.15  Aligned_cols=115  Identities=25%  Similarity=0.372  Sum_probs=88.0

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES   99 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~   99 (433)
                      .++.+++......+-.++||+|||||-.+ ..++...    .+++|+|||+.|++.|.++-...  ...++++... ++.
T Consensus       112 ~~l~emI~~~~~g~F~~~lDLGCGTGL~G-~~lR~~a----~~ltGvDiS~nMl~kA~eKg~YD--~L~~Aea~~F-l~~  183 (287)
T COG4976         112 ELLAEMIGKADLGPFRRMLDLGCGTGLTG-EALRDMA----DRLTGVDISENMLAKAHEKGLYD--TLYVAEAVLF-LED  183 (287)
T ss_pred             HHHHHHHHhccCCccceeeecccCcCccc-HhHHHHH----hhccCCchhHHHHHHHHhccchH--HHHHHHHHHH-hhh
Confidence            55667777776667789999999999988 5555332    37999999999999999875211  1233443321 221


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ...++||+|++..++.++.+.+.++.-+...|+|||.+.++.-
T Consensus       184 ~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE  226 (287)
T COG4976         184 LTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVE  226 (287)
T ss_pred             ccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEec
Confidence            2348999999999999999999999999999999999998753

>KOG1975|consensus

Probab=99.10  E-value=4.1e-10  Score=106.96  Aligned_cols=126  Identities=20%  Similarity=0.359  Sum_probs=93.5

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CC-C----CeEEEEecccCCccccc--
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TN-P----KLEFVVANIADQNLESI--  100 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~-~----~i~~~~~Di~~~~l~~~--  100 (433)
                      +++..++|+|||-|..+..+-+    .+..+++|+||++..++.|++++    .. .    .+.|+.+|.....+.+.  
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~k----AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e  191 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDK----AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE  191 (389)
T ss_pred             ccccccceeccCCcccHhHhhh----hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc
Confidence            5688899999999998866654    33358999999999999999998    11 1    36788898765444432  


Q ss_pred             -ccCcEeEEEEcccccch----hhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccc
Q psy11646        101 -FLAKFNKIFSFYCLHWV----QDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTE  162 (433)
Q Consensus       101 -~~~~fD~Vis~~~l~~~----~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~  162 (433)
                       .+.+||+|-|-+++|+.    ...+.+++|+.+.|+|||+++-+.+...-+...++.. ....|..
T Consensus       192 ~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~-e~~~~gN  257 (389)
T KOG1975|consen  192 FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG-EVERFGN  257 (389)
T ss_pred             CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc-cchhhcc
Confidence             23459999999999976    3466789999999999999998877665554444433 2234543

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.09  E-value=3.5e-10  Score=100.43  Aligned_cols=78  Identities=24%  Similarity=0.398  Sum_probs=68.5

Q ss_pred             EEEeCCHHHHHHHHhhcC------CCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEE
Q psy11646         64 VGLDVSPNMIKHAKNHHT------NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEV  137 (433)
Q Consensus        64 ~gvDiS~~~l~~A~~~~~------~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~l  137 (433)
                      +|+|+|+.|++.|+++..      ..+++++++|+++.++++   ++||+|++..++|+++|+..++++++++|||||.+
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~---~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l   77 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDD---CEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV   77 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCC---CCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence            589999999999987651      246999999999876654   89999999999999999999999999999999999


Q ss_pred             EEEeccC
Q psy11646        138 LLLLNAF  144 (433)
Q Consensus       138 ll~~~~~  144 (433)
                      ++.+...
T Consensus        78 ~i~d~~~   84 (160)
T PLN02232         78 SILDFNK   84 (160)
T ss_pred             EEEECCC
Confidence            9987654

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.07  E-value=1.3e-09  Score=112.16  Aligned_cols=117  Identities=19%  Similarity=0.280  Sum_probs=85.0

Q ss_pred             hcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccc-cccC
Q psy11646         28 QFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLES-IFLA  103 (433)
Q Consensus        28 ~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~-~~~~  103 (433)
                      .+...++.+|||+|||+|..+..+ +...... .+++++|+++.+++.+++++   +..++++..+|+...+... ...+
T Consensus       247 ~l~~~~g~~VLDl~ag~G~kt~~l-a~~~~~~-g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~  324 (434)
T PRK14901        247 LLDPQPGEVILDACAAPGGKTTHI-AELMGDQ-GEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRG  324 (434)
T ss_pred             HhCCCCcCEEEEeCCCCchhHHHH-HHHhCCC-ceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccc
Confidence            345578999999999999999444 4443322 39999999999999999887   4457899999987643110 1236


Q ss_pred             cEeEEEEcc------cccchhh----------------HHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        104 KFNKIFSFY------CLHWVQD----------------QRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       104 ~fD~Vis~~------~l~~~~d----------------~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      +||.|++..      ++++.++                +...+.++.++|||||+++.++.+..+
T Consensus       325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~  389 (434)
T PRK14901        325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP  389 (434)
T ss_pred             cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence            899999743      3332221                467899999999999999988755443

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.07  E-value=8e-10  Score=115.41  Aligned_cols=101  Identities=25%  Similarity=0.360  Sum_probs=74.5

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCcccccccCcEeEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNLESIFLAKFNKI  108 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l~~~~~~~fD~V  108 (433)
                      ++.+|||+|||+|.++..+ +...+.  .+++++|+|+.+++.|+++.   . ..++.+.++|+... ++   .++||+|
T Consensus       138 ~~~~VLDlG~GsG~iai~l-a~~~p~--~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~---~~~fDlI  210 (506)
T PRK01544        138 KFLNILELGTGSGCIAISL-LCELPN--ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IE---KQKFDFI  210 (506)
T ss_pred             CCCEEEEccCchhHHHHHH-HHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-Cc---CCCccEE
Confidence            3568999999999999444 434444  49999999999999999987   2 24688999887542 22   2689999


Q ss_pred             EEcccccch--------------------------hhHHHHHHHHHHhccCCCEEEEE
Q psy11646        109 FSFYCLHWV--------------------------QDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       109 is~~~l~~~--------------------------~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +++......                          ......++++.++|+|||.+++.
T Consensus       211 vsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE  268 (506)
T PRK01544        211 VSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE  268 (506)
T ss_pred             EECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            997643221                          11244677888999999998875

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.06  E-value=1.2e-09  Score=102.94  Aligned_cols=132  Identities=17%  Similarity=0.311  Sum_probs=98.5

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCccc
Q psy11646         23 SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLE   98 (433)
Q Consensus        23 ~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~   98 (433)
                      ..++..+...||.+|||.|.|+|.++..++....|.|  +|+..|+.++.++.|++++    ...++++...|+....+.
T Consensus        30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G--~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~  107 (247)
T PF08704_consen   30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTG--HVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD  107 (247)
T ss_dssp             HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTS--EEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S
T ss_pred             HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCe--EEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc
Confidence            3566777889999999999999999955555555655  9999999999999999998    335899999999755453


Q ss_pred             ccccCcEeEEEEcccccchhhHHHHHHHHHHhc-cCCCEEEEEeccCCchhhHHHhhhcCCCccc
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLL-MPGGEVLLLLNAFNPIYDLYEKLSRKPKWTE  162 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~L-kpGG~lll~~~~~~p~~~~~~~~~~~~~W~~  162 (433)
                      ......+|.|+.     .++++..++..+.+.| +|||+++...++...+......+...+ |..
T Consensus       108 ~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~g-f~~  166 (247)
T PF08704_consen  108 EELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHG-FTD  166 (247)
T ss_dssp             TT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTT-EEE
T ss_pred             ccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCC-Cee
Confidence            333478999987     5567888999999999 899999998888877777777777643 543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=1.5e-09  Score=104.93  Aligned_cols=119  Identities=22%  Similarity=0.364  Sum_probs=83.4

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEe
Q psy11646         14 QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVA   90 (433)
Q Consensus        14 ~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~   90 (433)
                      -+++++.+++.++..+...+. +|||+|||||..+ ..++...+.  .+|+|+|+|+.+++.|++++   +..++.+++.
T Consensus        92 Pr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~ia-i~la~~~~~--~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~  167 (280)
T COG2890          92 PRPDTELLVEAALALLLQLDK-RILDLGTGSGAIA-IALAKEGPD--AEVIAVDISPDALALARENAERNGLVRVLVVQS  167 (280)
T ss_pred             cCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHH-HHHHhhCcC--CeEEEEECCHHHHHHHHHHHHHcCCccEEEEee
Confidence            345677777776644443333 8999999999999 555655555  49999999999999999998   2244555555


Q ss_pred             cccCCcccccccCcEeEEEEcccccchh-------------------------hHHHHHHHHHHhccCCCEEEEEe
Q psy11646         91 NIADQNLESIFLAKFNKIFSFYCLHWVQ-------------------------DQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        91 Di~~~~l~~~~~~~fD~Vis~~~l~~~~-------------------------d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |.... +.    ++||+|++|...--.+                         -....+.++.+.|+|||.+++-.
T Consensus       168 dlf~~-~~----~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~  238 (280)
T COG2890         168 DLFEP-LR----GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI  238 (280)
T ss_pred             ecccc-cC----CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence            54332 22    5899999987542111                         13456788899999999877753

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.05  E-value=1.7e-09  Score=96.96  Aligned_cols=109  Identities=11%  Similarity=0.240  Sum_probs=79.5

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCccccc
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLESI  100 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~~  100 (433)
                      ++.+++.+...++.+|||||||+|.++..++..    + .+++++|+++.+++.+++++ ...+++++.+|+.+.+++. 
T Consensus         2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~----~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~-   75 (169)
T smart00650        2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLER----A-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPK-   75 (169)
T ss_pred             HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhc----C-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccc-
Confidence            345666677778889999999999999655542    2 48999999999999999987 3468999999998875543 


Q ss_pred             ccCcEeEEEEcccccchhh-HHHHHHHHHHhccCCCEEEEE
Q psy11646        101 FLAKFNKIFSFYCLHWVQD-QRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d-~~~~l~~i~~~LkpGG~lll~  140 (433)
                        .+||.|+++..++.... ...++++  ..+.++|.+++.
T Consensus        76 --~~~d~vi~n~Py~~~~~~i~~~l~~--~~~~~~~~l~~q  112 (169)
T smart00650       76 --LQPYKVVGNLPYNISTPILFKLLEE--PPAFRDAVLMVQ  112 (169)
T ss_pred             --cCCCEEEECCCcccHHHHHHHHHhc--CCCcceEEEEEE
Confidence              46999999988775322 2223322  123467777664

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.05  E-value=1.8e-09  Score=103.70  Aligned_cols=113  Identities=18%  Similarity=0.179  Sum_probs=82.5

Q ss_pred             cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcE
Q psy11646         29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKF  105 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~f  105 (433)
                      +..+++.+|||+|||+|..+. .++...... ..++++|+++.+++.+++++   +..++.+...|....+..   .+.|
T Consensus        67 l~~~~g~~VLDl~ag~G~kt~-~la~~~~~~-g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~---~~~f  141 (264)
T TIGR00446        67 LEPDPPERVLDMAAAPGGKTT-QISALMKNE-GAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA---VPKF  141 (264)
T ss_pred             hCCCCcCEEEEECCCchHHHH-HHHHHcCCC-CEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh---ccCC
Confidence            345688999999999999994 444444333 38999999999999999887   335688888887654322   2569


Q ss_pred             eEEEEcccccc--------------h--------hhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        106 NKIFSFYCLHW--------------V--------QDQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       106 D~Vis~~~l~~--------------~--------~d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      |.|++......              .        ..+...++++.++|||||+++.++.+..+
T Consensus       142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~  204 (264)
T TIGR00446       142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP  204 (264)
T ss_pred             CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence            99997432111              0        12346899999999999999988765544

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=2e-09  Score=103.38  Aligned_cols=117  Identities=22%  Similarity=0.284  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeE----EEEecc
Q psy11646         17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLE----FVVANI   92 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~----~~~~Di   92 (433)
                      .+.-.|+.+-+..  .++.+|||+|||||.+++..+.  +  |..+++|+|++|.+++.|++++...++.    ....+.
T Consensus       148 TT~lcL~~Le~~~--~~g~~vlDvGcGSGILaIAa~k--L--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~  221 (300)
T COG2264         148 TTSLCLEALEKLL--KKGKTVLDVGCGSGILAIAAAK--L--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLL  221 (300)
T ss_pred             hHHHHHHHHHHhh--cCCCEEEEecCChhHHHHHHHH--c--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccc
Confidence            3334444433333  4789999999999999844332  2  3248999999999999999998222333    222222


Q ss_pred             cCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646         93 ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus        93 ~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      ...    ...++||+|++|-.-+-   ...+...+.+.+||||+++++..-...
T Consensus       222 ~~~----~~~~~~DvIVANILA~v---l~~La~~~~~~lkpgg~lIlSGIl~~q  268 (300)
T COG2264         222 LEV----PENGPFDVIVANILAEV---LVELAPDIKRLLKPGGRLILSGILEDQ  268 (300)
T ss_pred             hhh----cccCcccEEEehhhHHH---HHHHHHHHHHHcCCCceEEEEeehHhH
Confidence            111    12269999999873221   357788999999999999998654433

>PHA03411 putative methyltransferase; Provisional

Probab=99.02  E-value=2.6e-09  Score=101.46  Aligned_cols=100  Identities=18%  Similarity=0.291  Sum_probs=76.3

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSF  111 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~  111 (433)
                      .++.+|||+|||+|.++..++. ..+.  .+++|+|+++.|++.|+++.  ++++++++|+.+...    ..+||+|+++
T Consensus        63 ~~~grVLDLGcGsGilsl~la~-r~~~--~~V~gVDisp~al~~Ar~n~--~~v~~v~~D~~e~~~----~~kFDlIIsN  133 (279)
T PHA03411         63 HCTGKVLDLCAGIGRLSFCMLH-RCKP--EKIVCVELNPEFARIGKRLL--PEAEWITSDVFEFES----NEKFDVVISN  133 (279)
T ss_pred             ccCCeEEEcCCCCCHHHHHHHH-hCCC--CEEEEEECCHHHHHHHHHhC--cCCEEEECchhhhcc----cCCCcEEEEc
Confidence            3467999999999999844433 2222  48999999999999999986  578899999876532    2689999999


Q ss_pred             ccccchhh--------------------HHHHHHHHHHhccCCCEEEEE
Q psy11646        112 YCLHWVQD--------------------QRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       112 ~~l~~~~d--------------------~~~~l~~i~~~LkpGG~lll~  140 (433)
                      .++++.+.                    ....+.....+|+|+|.+.+.
T Consensus       134 PPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        134 PPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             CCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence            99887521                    134566778888899876665

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.02  E-value=3.2e-09  Score=109.04  Aligned_cols=114  Identities=22%  Similarity=0.346  Sum_probs=81.8

Q ss_pred             hcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcE
Q psy11646         28 QFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKF  105 (433)
Q Consensus        28 ~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~f  105 (433)
                      .+...++.+|||+|||+|..+..++ ...+.  .+++++|+++.+++.+++++  ...++++.++|+..... ....++|
T Consensus       239 ~l~~~~g~~VLDlgaG~G~~t~~la-~~~~~--~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~-~~~~~~f  314 (427)
T PRK10901        239 LLAPQNGERVLDACAAPGGKTAHIL-ELAPQ--AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQ-WWDGQPF  314 (427)
T ss_pred             HcCCCCCCEEEEeCCCCChHHHHHH-HHcCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchh-hcccCCC
Confidence            3445689999999999999995444 44333  49999999999999999987  22346888899875321 0123679


Q ss_pred             eEEEEccccc------------ch----------hhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646        106 NKIFSFYCLH------------WV----------QDQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus       106 D~Vis~~~l~------------~~----------~d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      |.|++.....            |.          .....++.++.++|||||.++.++.+..
T Consensus       315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~  376 (427)
T PRK10901        315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL  376 (427)
T ss_pred             CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            9999654321            11          1134689999999999999998875433

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.02  E-value=2.3e-09  Score=109.94  Aligned_cols=114  Identities=19%  Similarity=0.251  Sum_probs=83.5

Q ss_pred             cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcE
Q psy11646         29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKF  105 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~f  105 (433)
                      +...++.+|||+|||+|..+..+ +.....+ .+++++|+|+.+++.+++++   +..++++.+.|....+  ....++|
T Consensus       233 l~~~~g~~VLD~cagpGgkt~~l-a~~~~~~-g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~--~~~~~~f  308 (431)
T PRK14903        233 MELEPGLRVLDTCAAPGGKTTAI-AELMKDQ-GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLT--EYVQDTF  308 (431)
T ss_pred             hCCCCCCEEEEeCCCccHHHHHH-HHHcCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhh--hhhhccC
Confidence            44578899999999999998444 4443323 49999999999999999987   3356889999987542  1223789


Q ss_pred             eEEEEcccc------cchh----------------hHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        106 NKIFSFYCL------HWVQ----------------DQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       106 D~Vis~~~l------~~~~----------------d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      |.|++....      ..-+                .+.+.+.++.+.|||||.++.++.+..+
T Consensus       309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~  371 (431)
T PRK14903        309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK  371 (431)
T ss_pred             CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence            999974322      1111                2356799999999999999998765443

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.00  E-value=5.6e-09  Score=98.98  Aligned_cols=107  Identities=25%  Similarity=0.416  Sum_probs=85.7

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccccccc
Q psy11646         23 SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFL  102 (433)
Q Consensus        23 ~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~  102 (433)
                      ..+.....+.+..+|+|||+|+|.++.. +++..|..  +++..|. |..++.+++   ..++++..+|+. .+++    
T Consensus        90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~-l~~~~P~l--~~~v~Dl-p~v~~~~~~---~~rv~~~~gd~f-~~~P----  157 (241)
T PF00891_consen   90 DILLEAFDFSGFKTVVDVGGGSGHFAIA-LARAYPNL--RATVFDL-PEVIEQAKE---ADRVEFVPGDFF-DPLP----  157 (241)
T ss_dssp             HHHHHHSTTTTSSEEEEET-TTSHHHHH-HHHHSTTS--EEEEEE--HHHHCCHHH---TTTEEEEES-TT-TCCS----
T ss_pred             hhhhccccccCccEEEeccCcchHHHHH-HHHHCCCC--cceeecc-Hhhhhcccc---ccccccccccHH-hhhc----
Confidence            5566677777788999999999999954 45566654  9999998 888999888   489999999997 4455    


Q ss_pred             CcEeEEEEcccccchhh--HHHHHHHHHHhccCC--CEEEEEec
Q psy11646        103 AKFNKIFSFYCLHWVQD--QRQAISNIYNLLMPG--GEVLLLLN  142 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~~d--~~~~l~~i~~~LkpG--G~lll~~~  142 (433)
                      . +|+++..++||...+  ....|+++++.|+||  |++++.+.
T Consensus       158 ~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~  200 (241)
T PF00891_consen  158 V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM  200 (241)
T ss_dssp             S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred             c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence            4 999999999998865  457899999999999  99999864

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.00  E-value=2.4e-09  Score=110.46  Aligned_cols=113  Identities=17%  Similarity=0.287  Sum_probs=83.0

Q ss_pred             hcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCc
Q psy11646         28 QFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAK  104 (433)
Q Consensus        28 ~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~  104 (433)
                      .+...++.+|||+|||+|..+. .++...... .+++++|+|+.+++.+++++   +..++++.++|+.... +   .++
T Consensus       245 ~l~~~~g~~VLDlgaG~G~kt~-~la~~~~~~-~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~---~~~  318 (445)
T PRK14904        245 LLNPQPGSTVLDLCAAPGGKST-FMAELMQNR-GQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-P---EEQ  318 (445)
T ss_pred             hcCCCCCCEEEEECCCCCHHHH-HHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-c---CCC
Confidence            3445678999999999999884 444433333 49999999999999999887   3356889999987653 2   268


Q ss_pred             EeEEEEcc------ccc------ch----------hhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        105 FNKIFSFY------CLH------WV----------QDQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       105 fD~Vis~~------~l~------~~----------~d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      ||.|++-.      .+.      |.          ..+...+.++.++|||||+++..+.+..+
T Consensus       319 fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~  382 (445)
T PRK14904        319 PDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP  382 (445)
T ss_pred             CCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence            99999631      110      11          12346899999999999999998866554

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.00  E-value=3.3e-09  Score=102.79  Aligned_cols=124  Identities=23%  Similarity=0.298  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--C--CCCeEEEEe
Q psy11646         15 QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--T--NPKLEFVVA   90 (433)
Q Consensus        15 ~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~--~~~i~~~~~   90 (433)
                      ++-++-.|+.+.+.  ..++.+|||+|||||-++... ++ ++.  .+|+|+|++|.+++.|+++.  .  ..++.+  .
T Consensus       145 H~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA-~k-lGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v--~  216 (295)
T PF06325_consen  145 HPTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAA-AK-LGA--KKVVAIDIDPLAVEAARENAELNGVEDRIEV--S  216 (295)
T ss_dssp             CHHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHH-HH-TTB--SEEEEEESSCHHHHHHHHHHHHTT-TTCEEE--S
T ss_pred             CHHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHH-HH-cCC--CeEEEecCCHHHHHHHHHHHHHcCCCeeEEE--E
Confidence            34444444444333  257889999999999998433 32 232  48999999999999999998  2  123332  2


Q ss_pred             cccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhh
Q psy11646         91 NIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKL  154 (433)
Q Consensus        91 Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~  154 (433)
                      ...+  ..   .++||+|++|-..+-+   ...+..+.++|+|||+++++..-......+...+
T Consensus       217 ~~~~--~~---~~~~dlvvANI~~~vL---~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~  272 (295)
T PF06325_consen  217 LSED--LV---EGKFDLVVANILADVL---LELAPDIASLLKPGGYLILSGILEEQEDEVIEAY  272 (295)
T ss_dssp             CTSC--TC---CS-EEEEEEES-HHHH---HHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred             Eecc--cc---cccCCEEEECCCHHHH---HHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHH
Confidence            1111  22   2899999998765433   4567788999999999999865555444444444

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.98  E-value=4.5e-09  Score=108.49  Aligned_cols=113  Identities=19%  Similarity=0.228  Sum_probs=81.5

Q ss_pred             hcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCc
Q psy11646         28 QFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAK  104 (433)
Q Consensus        28 ~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~  104 (433)
                      .+...++.+|||+|||+|..+..++....+.  .+++++|+++.+++.+++++   +..++++.++|+.... .. ..++
T Consensus       245 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~--~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-~~-~~~~  320 (444)
T PRK14902        245 ALDPKGGDTVLDACAAPGGKTTHIAELLKNT--GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH-EK-FAEK  320 (444)
T ss_pred             HhCCCCCCEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc-ch-hccc
Confidence            3345678899999999999995444432233  49999999999999999887   3346899999987642 11 1268


Q ss_pred             EeEEEEcccccch---------------h-------hHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646        105 FNKIFSFYCLHWV---------------Q-------DQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       105 fD~Vis~~~l~~~---------------~-------d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      ||+|++.......               .       -...++.++.++|||||.++.++...
T Consensus       321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  382 (444)
T PRK14902        321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI  382 (444)
T ss_pred             CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence            9999986432110               0       12457999999999999999775443

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.98  E-value=4.4e-09  Score=108.03  Aligned_cols=116  Identities=19%  Similarity=0.274  Sum_probs=80.3

Q ss_pred             HhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC--CCCeEE--EEecccCCccccccc
Q psy11646         27 DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT--NPKLEF--VVANIADQNLESIFL  102 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~--~~~i~~--~~~Di~~~~l~~~~~  102 (433)
                      ..+...++.+|||+|||+|..+. .++...+.  .+++++|+++.+++.+++++.  .-.+.+  ..+|...... ....
T Consensus       232 ~~L~~~~g~~VLDlcag~G~kt~-~la~~~~~--~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~-~~~~  307 (426)
T TIGR00563       232 TWLAPQNEETILDACAAPGGKTT-HILELAPQ--AQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ-WAEN  307 (426)
T ss_pred             HHhCCCCCCeEEEeCCCccHHHH-HHHHHcCC--CeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc-cccc
Confidence            33455789999999999999994 44444443  499999999999999998872  112333  4555443221 0123


Q ss_pred             CcEeEEEEc------ccccchhh----------------HHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        103 AKFNKIFSF------YCLHWVQD----------------QRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       103 ~~fD~Vis~------~~l~~~~d----------------~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      ++||.|++.      ++++..++                +...+.++.++|||||.++.++.+..+
T Consensus       308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~  373 (426)
T TIGR00563       308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP  373 (426)
T ss_pred             cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence            689999963      23433222                467899999999999999998766543

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK04457 spermidine synthase; Provisional

Probab=98.97  E-value=4.8e-09  Score=100.63  Aligned_cols=110  Identities=18%  Similarity=0.287  Sum_probs=81.3

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC----CCCeEEEEecccCCcccccccCcEeE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----NPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~----~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      .++.+|||||||+|.++ ..++...|..  +++++|+++.+++.|++.+.    .++++++.+|+.+. +.. ..++||+
T Consensus        65 ~~~~~vL~IG~G~G~l~-~~l~~~~p~~--~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~-l~~-~~~~yD~  139 (262)
T PRK04457         65 PRPQHILQIGLGGGSLA-KFIYTYLPDT--RQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY-IAV-HRHSTDV  139 (262)
T ss_pred             CCCCEEEEECCCHhHHH-HHHHHhCCCC--eEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH-HHh-CCCCCCE
Confidence            35679999999999998 5555555554  89999999999999999872    36899999997653 221 2368999


Q ss_pred             EEEcccc-cchh---hHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        108 IFSFYCL-HWVQ---DQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       108 Vis~~~l-~~~~---d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      |++...- ...+   ....+++++.+.|+|||.+++......+
T Consensus       140 I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~  182 (262)
T PRK04457        140 ILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDK  182 (262)
T ss_pred             EEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCch
Confidence            9975311 1111   1368899999999999999886544433

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.93  E-value=9.6e-09  Score=96.92  Aligned_cols=114  Identities=15%  Similarity=0.240  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEeccc
Q psy11646         18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIA   93 (433)
Q Consensus        18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~   93 (433)
                      ..++|..++..   .++.+|||+|||+|..+..+++ ..+.. .+++++|+++++++.|++++    ...+++++.+|+.
T Consensus        56 ~g~~L~~l~~~---~~~~~vLEiGt~~G~s~l~la~-~~~~~-g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~  130 (234)
T PLN02781         56 EGLFLSMLVKI---MNAKNTLEIGVFTGYSLLTTAL-ALPED-GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL  130 (234)
T ss_pred             HHHHHHHHHHH---hCCCEEEEecCcccHHHHHHHH-hCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence            34455555544   4577999999999998844444 33333 49999999999999999988    2357999999986


Q ss_pred             CCccccc----ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646         94 DQNLESI----FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        94 ~~~l~~~----~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +. ++..    ..++||+|+.-..=   +.....+..+.++|+|||.+++.
T Consensus       131 ~~-L~~l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        131 SA-LDQLLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             HH-HHHHHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEE
Confidence            53 2221    13689999885431   33456788999999999987764

>KOG2940|consensus

Probab=98.93  E-value=2.5e-09  Score=97.07  Aligned_cols=114  Identities=23%  Similarity=0.364  Sum_probs=93.8

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcccccccCcEeEEEEc
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLESIFLAKFNKIFSF  111 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~  111 (433)
                      ....++|||||-|.....++.    .+..+++-+|.|..|++.++..- ..-.+...+.|-+..++.+   +++|+|++.
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~----e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~e---ns~DLiisS  144 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRG----EGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKE---NSVDLIISS  144 (325)
T ss_pred             hCcceeecccchhhhhHHHHh----cchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccc---cchhhhhhh
Confidence            355799999999999955544    33458999999999999998763 2234567788877766555   999999999


Q ss_pred             ccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHh
Q psy11646        112 YCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEK  153 (433)
Q Consensus       112 ~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~  153 (433)
                      ..+||+.+.+..+.+++..|||+|.++.+.++...+++....
T Consensus       145 lslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~s  186 (325)
T KOG2940|consen  145 LSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCS  186 (325)
T ss_pred             hhhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHH
Confidence            999999999999999999999999999888888888776643

>TIGR00417 speE spermidine synthase

Probab=98.93  E-value=2.5e-08  Score=96.16  Aligned_cols=105  Identities=17%  Similarity=0.185  Sum_probs=75.8

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-------CCCCeEEEEecccCCcccccccC
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-------TNPKLEFVVANIADQNLESIFLA  103 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-------~~~~i~~~~~Di~~~~l~~~~~~  103 (433)
                      ++.+.+||+||||+|..+..++. ..+  ..+++++|+++.+++.|++.+       ..+++++...|.... +. ...+
T Consensus        70 ~~~p~~VL~iG~G~G~~~~~ll~-~~~--~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~-l~-~~~~  144 (270)
T TIGR00417        70 HPNPKHVLVIGGGDGGVLREVLK-HKS--VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF-LA-DTEN  144 (270)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHh-CCC--cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH-HH-hCCC
Confidence            34456999999999999855554 222  248999999999999999875       135677877776442 11 1137


Q ss_pred             cEeEEEEcccccch--hh--HHHHHHHHHHhccCCCEEEEE
Q psy11646        104 KFNKIFSFYCLHWV--QD--QRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       104 ~fD~Vis~~~l~~~--~d--~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +||+|++.......  .+  ...+++.+.+.|+|||.+++.
T Consensus       145 ~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       145 TFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             CccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            89999997653221  12  357889999999999998875

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PHA03412 putative methyltransferase; Provisional

Probab=98.93  E-value=6.3e-09  Score=96.73  Aligned_cols=98  Identities=14%  Similarity=0.179  Sum_probs=72.4

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcc
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFY  112 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~  112 (433)
                      .+.+|||+|||+|.++..++.........+++++|+++.+++.|+++.  .++.+...|+....+    .++||+|+++.
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--~~~~~~~~D~~~~~~----~~~FDlIIsNP  122 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--PEATWINADALTTEF----DTLFDMAISNP  122 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--cCCEEEEcchhcccc----cCCccEEEECC
Confidence            467999999999999854443222111248999999999999999886  568899999876433    26899999998


Q ss_pred             cccchh-----------h-HHHHHHHHHHhccCCCE
Q psy11646        113 CLHWVQ-----------D-QRQAISNIYNLLMPGGE  136 (433)
Q Consensus       113 ~l~~~~-----------d-~~~~l~~i~~~LkpGG~  136 (433)
                      .++-..           . ...++..+.+++++|+.
T Consensus       123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            876331           1 34577888887776664

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.91  E-value=9e-09  Score=95.83  Aligned_cols=116  Identities=24%  Similarity=0.383  Sum_probs=86.1

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---------------CCC
Q psy11646         19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---------------TNP   83 (433)
Q Consensus        19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---------------~~~   83 (433)
                      ...|.+++..+..+++.+||..|||.|... ..|+.   .| .+|+|+|+|+.+++.+.+..               ...
T Consensus        23 ~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~-~~La~---~G-~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~   97 (218)
T PF05724_consen   23 NPALVEYLDSLALKPGGRVLVPGCGKGYDM-LWLAE---QG-HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAG   97 (218)
T ss_dssp             THHHHHHHHHHTTSTSEEEEETTTTTSCHH-HHHHH---TT-EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTS
T ss_pred             CHHHHHHHHhcCCCCCCeEEEeCCCChHHH-HHHHH---CC-CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCC
Confidence            345556666666678889999999999998 55553   34 79999999999999984322               124


Q ss_pred             CeEEEEecccCCcccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEe
Q psy11646         84 KLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        84 ~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +|++.++|+-..+  ....++||+|+=..+++.++  ...+..+.+.++|+|||.+++..
T Consensus        98 ~i~~~~gDfF~l~--~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~  155 (218)
T PF05724_consen   98 RITIYCGDFFELP--PEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLIT  155 (218)
T ss_dssp             SEEEEES-TTTGG--GSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred             ceEEEEcccccCC--hhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            6789999997743  22236899999998888774  46788999999999999955544

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG2904|consensus

Probab=98.86  E-value=2.7e-08  Score=92.80  Aligned_cols=125  Identities=22%  Similarity=0.315  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHhcC---CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEE
Q psy11646         15 QLDAAKLLSQYIDQFK---WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEF   87 (433)
Q Consensus        15 ~~~~~~ll~~l~~~l~---~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~   87 (433)
                      |+.++++++.+++.++   +..+..|||+|||+|+.+..++ ..++++  .++++|.|+.++..|.++.    ...++.+
T Consensus       127 RpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll-~~L~~~--~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v  203 (328)
T KOG2904|consen  127 RPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLL-HGLPQC--TVTAIDVSKAAIKLAKENAQRLKLSGRIEV  203 (328)
T ss_pred             CccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHH-hcCCCc--eEEEEeccHHHHHHHHHHHHHHhhcCceEE
Confidence            4566666666666554   3356689999999999995554 455654  9999999999999999988    3467777


Q ss_pred             EEecccCCcccc--cccCcEeEEEEcccccchh--------------------------hHHHHHHHHHHhccCCCEEEE
Q psy11646         88 VVANIADQNLES--IFLAKFNKIFSFYCLHWVQ--------------------------DQRQAISNIYNLLMPGGEVLL  139 (433)
Q Consensus        88 ~~~Di~~~~l~~--~~~~~fD~Vis~~~l~~~~--------------------------d~~~~l~~i~~~LkpGG~lll  139 (433)
                      +..+.+.....+  ...+++|+++||...-.-+                          .......-+.|+|+|||.+.+
T Consensus       204 ~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l  283 (328)
T KOG2904|consen  204 IHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL  283 (328)
T ss_pred             EecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence            766665443322  3458999999987543221                          122345566789999999888


Q ss_pred             Eec
Q psy11646        140 LLN  142 (433)
Q Consensus       140 ~~~  142 (433)
                      ...
T Consensus       284 e~~  286 (328)
T KOG2904|consen  284 ELV  286 (328)
T ss_pred             Eec
Confidence            765

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.86  E-value=2.3e-08  Score=91.70  Aligned_cols=122  Identities=11%  Similarity=0.023  Sum_probs=84.2

Q ss_pred             cHHHHHHHHHHHHHhcCC-CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEE
Q psy11646         14 QQLDAAKLLSQYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVV   89 (433)
Q Consensus        14 ~~~~~~~ll~~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~   89 (433)
                      .|+....+.+.++..+.. .++.+|||+|||+|.++..++++    +..+++++|+++.+++.|++++   +..++++++
T Consensus        33 ~Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr----~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~  108 (199)
T PRK10909         33 LRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSR----YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVN  108 (199)
T ss_pred             cCcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHc----CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEE
Confidence            345555555555554432 45789999999999999555553    2248999999999999999987   335789999


Q ss_pred             ecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHH--hccCCCEEEEEec
Q psy11646         90 ANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYN--LLMPGGEVLLLLN  142 (433)
Q Consensus        90 ~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~--~LkpGG~lll~~~  142 (433)
                      +|+... ++. ..++||+|++...+.. .-...++..+..  +|+|+|.+++...
T Consensus       109 ~D~~~~-l~~-~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~  160 (199)
T PRK10909        109 TNALSF-LAQ-PGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESE  160 (199)
T ss_pred             chHHHH-Hhh-cCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence            998653 221 2257999999998542 223344454444  4789998887643

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.85  E-value=1.6e-08  Score=92.39  Aligned_cols=118  Identities=20%  Similarity=0.371  Sum_probs=70.5

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCCh--hHHHHhccc-C---CCCCcEEEEEeCCHHHHHHHHhhc-C-----------
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGN--VTSKLLLPN-L---PKSVVKLVGLDVSPNMIKHAKNHH-T-----------   81 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~--~~~~~l~~~-~---~~~~~~v~gvDiS~~~l~~A~~~~-~-----------   81 (433)
                      .++..+++.....+..+|+-.||++|.  ++..++... .   .....+++|+|+|+.+++.|++-. .           
T Consensus        18 ~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~   97 (196)
T PF01739_consen   18 EVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAY   97 (196)
T ss_dssp             HHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHH
T ss_pred             HHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHH
Confidence            334334433333356899999999995  333333322 1   111268999999999999997643 0           


Q ss_pred             -------------------CCCeEEEEecccCCcccccccCcEeEEEEcccccchhh--HHHHHHHHHHhccCCCEEEEE
Q psy11646         82 -------------------NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQD--QRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        82 -------------------~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~  140 (433)
                                         ...|.|.+.|+.+....   .+.||+|+|.+++-++..  ...+++.+++.|+|||.|++.
T Consensus        98 ~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~---~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen   98 LRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPP---FGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             HHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             HHHhccccCCCceeEChHHcCceEEEecccCCCCcc---cCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence                               12488999998872222   378999999999988854  578999999999999999985

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.84  E-value=2.4e-08  Score=103.10  Aligned_cols=118  Identities=19%  Similarity=0.274  Sum_probs=87.0

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEe
Q psy11646         14 QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVA   90 (433)
Q Consensus        14 ~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~   90 (433)
                      .+..++.+++.+++.+...++.+|||+|||+|.++.. +++.   . .+++|+|+|+.|++.|++++   +..++++.++
T Consensus       278 n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~-la~~---~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~  352 (443)
T PRK13168        278 NAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLP-LARQ---A-AEVVGVEGVEAMVERARENARRNGLDNVTFYHA  352 (443)
T ss_pred             CHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHH-HHHh---C-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEe
Confidence            4555677888888877767889999999999999954 4432   2 48999999999999999987   3357999999


Q ss_pred             cccCCcccc--cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         91 NIADQNLES--IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        91 Di~~~~l~~--~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |+.+. +..  ...++||+|++...-...   ...+..+.+ ++|++.++++.
T Consensus       353 d~~~~-l~~~~~~~~~fD~Vi~dPPr~g~---~~~~~~l~~-~~~~~ivyvSC  400 (443)
T PRK13168        353 NLEED-FTDQPWALGGFDKVLLDPPRAGA---AEVMQALAK-LGPKRIVYVSC  400 (443)
T ss_pred             ChHHh-hhhhhhhcCCCCEEEECcCCcCh---HHHHHHHHh-cCCCeEEEEEe
Confidence            98653 211  123679999998775543   234555554 68888877764

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.80  E-value=6.1e-08  Score=98.13  Aligned_cols=104  Identities=22%  Similarity=0.227  Sum_probs=76.6

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC--CCeEEEEecccCCccccc--ccCcE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN--PKLEFVVANIADQNLESI--FLAKF  105 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~--~~i~~~~~Di~~~~l~~~--~~~~f  105 (433)
                      ++.+|||+|||+|.++..++.    .+..+++++|+|+.+++.|++++   +.  .+++++++|+.+. +...  ..++|
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~----~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~-l~~~~~~~~~f  294 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALM----GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL-LRTYRDRGEKF  294 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHH-HHHHHhcCCCC
Confidence            578999999999999854433    22258999999999999999988   22  3689999998764 2221  13689


Q ss_pred             eEEEEcccccch---------hhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        106 NKIFSFYCLHWV---------QDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       106 D~Vis~~~l~~~---------~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |+|++.......         .+....+....++|+|||.++...
T Consensus       295 DlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s  339 (396)
T PRK15128        295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS  339 (396)
T ss_pred             CEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            999998764321         123445567789999999988754

>KOG2899|consensus

Probab=98.80  E-value=4e-08  Score=90.16  Aligned_cols=106  Identities=24%  Similarity=0.532  Sum_probs=72.2

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC-CCCeEEEE--------------------
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT-NPKLEFVV--------------------   89 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~-~~~i~~~~--------------------   89 (433)
                      +..+..+|||||.+|.++. .+++.+...  .+.|+||++..++.|++... ....++.+                    
T Consensus        56 ~f~~~~~LDIGCNsG~lt~-~iak~F~~r--~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~  132 (288)
T KOG2899|consen   56 WFEPKQALDIGCNSGFLTL-SIAKDFGPR--RILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNE  132 (288)
T ss_pred             ccCcceeEeccCCcchhHH-HHHHhhccc--eeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccc
Confidence            3467789999999999994 555555544  79999999999999999871 11111111                    


Q ss_pred             -----------------eccc--CCcccccccCcEeEEEEcccccch------hhHHHHHHHHHHhccCCCEEEE
Q psy11646         90 -----------------ANIA--DQNLESIFLAKFNKIFSFYCLHWV------QDQRQAISNIYNLLMPGGEVLL  139 (433)
Q Consensus        90 -----------------~Di~--~~~l~~~~~~~fD~Vis~~~l~~~------~d~~~~l~~i~~~LkpGG~lll  139 (433)
                                       .+..  ...+-+.....||+|+|..+--|+      +....+++.++++|.|||++++
T Consensus       133 a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv  207 (288)
T KOG2899|consen  133 ADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV  207 (288)
T ss_pred             ccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence                             1000  000111234679999997765544      2367899999999999999887

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.78  E-value=4.6e-08  Score=88.95  Aligned_cols=128  Identities=18%  Similarity=0.260  Sum_probs=88.6

Q ss_pred             hhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCC
Q psy11646          7 YETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNP   83 (433)
Q Consensus         7 Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~   83 (433)
                      |+......+....++|.+++.    ..+.+|||||||||..+ ..+++.+|.-  ++.-.|..+..+...+...   ..+
T Consensus         3 ~spAaeRNk~pIl~vL~~~l~----~~~~~vLEiaSGtGqHa-~~FA~~lP~l--~WqPSD~~~~~~~sI~a~~~~~~~~   75 (204)
T PF06080_consen    3 FSPAAERNKDPILEVLKQYLP----DSGTRVLEIASGTGQHA-VYFAQALPHL--TWQPSDPDDNLRPSIRAWIAEAGLP   75 (204)
T ss_pred             CChhhhhCHhHHHHHHHHHhC----ccCceEEEEcCCccHHH-HHHHHHCCCC--EEcCCCCChHHHhhHHHHHHhcCCc
Confidence            444555566666666665542    22336999999999999 6777788865  8888899888764444332   223


Q ss_pred             CeE-EEEecccCCccccc-----ccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEe
Q psy11646         84 KLE-FVVANIADQNLESI-----FLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        84 ~i~-~~~~Di~~~~l~~~-----~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ++. -+..|+...+.+-.     ..++||.|++.+++|-++  ..+..++.+.++|++||.+++-.
T Consensus        76 Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG  141 (204)
T PF06080_consen   76 NVRPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG  141 (204)
T ss_pred             ccCCCeEeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence            332 34567766532221     346899999999999774  46788999999999999998864

The function of this family is unknown.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.78  E-value=4.6e-08  Score=106.31  Aligned_cols=103  Identities=17%  Similarity=0.193  Sum_probs=78.0

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC--CCeEEEEecccCCcccccccCcEeE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN--PKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~--~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      ++.+|||+|||+|.++..++.    .+..+|+++|+|+.+++.|++++   +.  .+++++++|+.+. +.. ..++||+
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~----~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~-l~~-~~~~fDl  611 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAAL----GGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW-LKE-AREQFDL  611 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH-HHH-cCCCcCE
Confidence            478999999999999955543    23247999999999999999998   22  3789999998653 221 1368999


Q ss_pred             EEEccccc-----------chhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        108 IFSFYCLH-----------WVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       108 Vis~~~l~-----------~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |++.....           ...+....+..+.++|+|||.+++..
T Consensus       612 IilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~  656 (702)
T PRK11783        612 IFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN  656 (702)
T ss_pred             EEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            99975431           12345677888999999999987754

>KOG3191|consensus

Probab=98.78  E-value=1.4e-07  Score=82.97  Aligned_cols=126  Identities=17%  Similarity=0.295  Sum_probs=91.7

Q ss_pred             HHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccC
Q psy11646         26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLA  103 (433)
Q Consensus        26 ~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~  103 (433)
                      ...+......-+||||||+|..+ .++++..... ..+.++|++|.+++..++.+  ...++..++.|+.+. +..   +
T Consensus        36 ~~eL~~~~~~i~lEIG~GSGvvs-tfL~~~i~~~-~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~---~  109 (209)
T KOG3191|consen   36 AAELKGHNPEICLEIGCGSGVVS-TFLASVIGPQ-ALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRN---E  109 (209)
T ss_pred             HHHHhhcCceeEEEecCCcchHH-HHHHHhcCCC-ceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hcc---C
Confidence            33443344678999999999999 6666555433 68999999999999987776  345677888887654 443   8


Q ss_pred             cEeEEEEcccccch-----------------hh----HHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcC
Q psy11646        104 KFNKIFSFYCLHWV-----------------QD----QRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRK  157 (433)
Q Consensus       104 ~fD~Vis~~~l~~~-----------------~d----~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~  157 (433)
                      +.|+++.+..+.-.                 .+    ..+.+..+-.+|.|.|.+++.....+...++.+.+...
T Consensus       110 ~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~  184 (209)
T KOG3191|consen  110 SVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKK  184 (209)
T ss_pred             CccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhc
Confidence            99999987654211                 11    34567777789999999999988888877777755543

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.77  E-value=6.6e-08  Score=86.95  Aligned_cols=122  Identities=18%  Similarity=0.214  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHhc-------CCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--C----CC
Q psy11646         17 DAAKLLSQYIDQF-------KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--T----NP   83 (433)
Q Consensus        17 ~~~~ll~~l~~~l-------~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~----~~   83 (433)
                      .+..+|.+++...       ...++.+|||+|||+|-.+ ..++...+.  .+|+.+|..+ .++..+.+.  .    ..
T Consensus        22 ~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~g-i~~a~~~~~--~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~   97 (173)
T PF10294_consen   22 PAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPG-IAAAKLFGA--ARVVLTDYNE-VLELLRRNIELNGSLLDG   97 (173)
T ss_dssp             -HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHH-HHHHHT-T---SEEEEEE-S--HHHHHHHHHHTT------
T ss_pred             chHHHHHHHHHHhcccccchhhcCCceEEEECCccchhH-HHHHhccCC--ceEEEeccch-hhHHHHHHHHhccccccc
Confidence            4445555555442       2346889999999999888 444443222  5999999998 888888876  1    35


Q ss_pred             CeEEEEecccCCcccc-cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         84 KLEFVVANIADQNLES-IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        84 ~i~~~~~Di~~~~l~~-~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ++.+..+|..+..... ....+||+|++..+++.....+.+++.+.++|+|+|.+++...
T Consensus        98 ~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~  157 (173)
T PF10294_consen   98 RVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK  157 (173)
T ss_dssp             --EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred             cccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            6788888876532122 2236899999999999888889999999999999999777653

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK01581 speE spermidine synthase; Validated

Probab=98.77  E-value=4.1e-08  Score=96.83  Aligned_cols=105  Identities=18%  Similarity=0.197  Sum_probs=77.0

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhh----------cCCCCeEEEEecccCCccccc
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH----------HTNPKLEFVVANIADQNLESI  100 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~----------~~~~~i~~~~~Di~~~~l~~~  100 (433)
                      +..+.+||+||||+|..+..+++ ..+  ..+++++|+++.+++.|++.          +..++++++.+|.... +. .
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk-~~~--v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f-L~-~  222 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLK-YET--VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF-LS-S  222 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHh-cCC--CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH-HH-h
Confidence            34567999999999998855554 322  24899999999999999972          1357899999998763 22 1


Q ss_pred             ccCcEeEEEEcccccc---hhh--HHHHHHHHHHhccCCCEEEEE
Q psy11646        101 FLAKFNKIFSFYCLHW---VQD--QRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~---~~d--~~~~l~~i~~~LkpGG~lll~  140 (433)
                      ..++||+|++...-..   ...  ...+++.+++.|+|||.++..
T Consensus       223 ~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        223 PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            2368999999743111   111  256889999999999998775

>PLN02672 methionine S-methyltransferase

Probab=98.76  E-value=3.6e-08  Score=109.55  Aligned_cols=125  Identities=18%  Similarity=0.244  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHhcCCC--CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CC---------
Q psy11646         15 QLDAAKLLSQYIDQFKWT--DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TN---------   82 (433)
Q Consensus        15 ~~~~~~ll~~l~~~l~~~--~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~---------   82 (433)
                      |++++.+++. +...+..  ++.+|||+|||+|..+ ..++...+..  +++|+|+|+.+++.|+++. ..         
T Consensus        99 RpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Ia-i~La~~~~~~--~v~avDis~~Al~~A~~Na~~n~l~~~~~~~  174 (1082)
T PLN02672         99 EDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWIS-IAIAEKWLPS--KVYGLDINPRAVKVAWINLYLNALDDDGLPV  174 (1082)
T ss_pred             chhHHHHHHH-HHhcccccCCCCEEEEEecchHHHH-HHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCcccccccc
Confidence            4566666666 4333211  3568999999999999 4445454544  9999999999999998887 11         


Q ss_pred             ---------CCeEEEEecccCCcccccccCcEeEEEEcccccch----------------------------------hh
Q psy11646         83 ---------PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWV----------------------------------QD  119 (433)
Q Consensus        83 ---------~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~----------------------------------~d  119 (433)
                               .+++++++|+.+. +.. ...+||+|++|...-..                                  +|
T Consensus       175 ~~~~~~~l~~rV~f~~sDl~~~-~~~-~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~d  252 (1082)
T PLN02672        175 YDGEGKTLLDRVEFYESDLLGY-CRD-NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQF  252 (1082)
T ss_pred             cccccccccccEEEEECchhhh-ccc-cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCc
Confidence                     3689999998654 221 11369999998653110                                  00


Q ss_pred             ----HHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        120 ----QRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       120 ----~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                          ....+.+..++|+|||.+++- .+..+
T Consensus       253 GL~~yr~i~~~a~~~L~pgG~l~lE-iG~~q  282 (1082)
T PLN02672        253 GLGLIARAVEEGISVIKPMGIMIFN-MGGRP  282 (1082)
T ss_pred             HHHHHHHHHHHHHHhccCCCEEEEE-ECccH
Confidence                256678888999999988764 34444

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.76  E-value=6.9e-08  Score=89.13  Aligned_cols=116  Identities=17%  Similarity=0.294  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEE-e
Q psy11646         16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVV-A   90 (433)
Q Consensus        16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~-~   90 (433)
                      +..-.+|..++..   .++.+|||||++.|..+ .+++...+.. .+++.+|+++++.+.|++++    ...+++.+. +
T Consensus        45 ~e~g~~L~~L~~~---~~~k~iLEiGT~~GySa-l~mA~~l~~~-g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~g  119 (219)
T COG4122          45 PETGALLRLLARL---SGPKRILEIGTAIGYSA-LWMALALPDD-GRLTTIERDEERAEIARENLAEAGVDDRIELLLGG  119 (219)
T ss_pred             hhHHHHHHHHHHh---cCCceEEEeecccCHHH-HHHHhhCCCC-CeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecC
Confidence            5556666666655   46789999999999999 4555566633 39999999999999999998    234577777 4


Q ss_pred             cccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646         91 NIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        91 Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      |..+. +.....++||+||.-..   -.+....+..+.++|+|||.+++-
T Consensus       120 dal~~-l~~~~~~~fDliFIDad---K~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         120 DALDV-LSRLLDGSFDLVFIDAD---KADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             cHHHH-HHhccCCCccEEEEeCC---hhhCHHHHHHHHHHhCCCcEEEEe
Confidence            65443 22234589999997332   124577899999999999998774

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.75  E-value=7.2e-08  Score=88.18  Aligned_cols=144  Identities=22%  Similarity=0.326  Sum_probs=94.2

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC--CC-eEEEEecccCCcccccccCcEeEEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN--PK-LEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~--~~-i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      ...+.||.|||-|..|..+|.+.    +.+|..+|..+..++.|++....  .+ .++.+..+++...+   .++||+|.
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~----f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~---~~~YDlIW  127 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV----FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE---EGKYDLIW  127 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-----SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-------TT-EEEEE
T ss_pred             CcceEEecccccchhHHHHHHHh----cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC---CCcEeEEE
Confidence            35689999999999997777754    34899999999999999987733  23 45666666654322   27999999


Q ss_pred             Ecccccchhh--HHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeeccccCceEEEcccccc
Q psy11646        110 SFYCLHWVQD--QRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQGDITKE  187 (433)
Q Consensus       110 s~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~pl~gv~~iqgDi~~~  187 (433)
                      +-+++-|+.|  ....|+++...|+|+|.+++=++....           + ...+.                ..|-.-.
T Consensus       128 ~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~-----------~-~~~~D----------------~~DsSvT  179 (218)
T PF05891_consen  128 IQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSS-----------G-FDEFD----------------EEDSSVT  179 (218)
T ss_dssp             EES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESS-----------S-EEEEE----------------TTTTEEE
T ss_pred             ehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCC-----------C-CcccC----------------CccCeee
Confidence            9999999965  568899999999999999987654332           1 00000                1111112


Q ss_pred             chHHHHHHhcCCCCCeEEEecCCC
Q psy11646        188 STIKEIFSHFDDEKVDLVVFDGAP  211 (433)
Q Consensus       188 ~t~~~il~~~~~~~~dlVvsD~ap  211 (433)
                      .+.+.+.+.|..++..+|-+..-+
T Consensus       180 Rs~~~~~~lF~~AGl~~v~~~~Q~  203 (218)
T PF05891_consen  180 RSDEHFRELFKQAGLRLVKEEKQK  203 (218)
T ss_dssp             EEHHHHHHHHHHCT-EEEEEEE-T
T ss_pred             cCHHHHHHHHHHcCCEEEEecccc
Confidence            356777788888888887765544

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PLN02366 spermidine synthase

Probab=98.75  E-value=6.4e-08  Score=94.66  Aligned_cols=106  Identities=17%  Similarity=0.232  Sum_probs=77.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-------CCCCeEEEEecccCCcccccccC
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-------TNPKLEFVVANIADQNLESIFLA  103 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-------~~~~i~~~~~Di~~~~l~~~~~~  103 (433)
                      ++.+.+||+||||.|..+..+++ . +. ..+++.+|+++.+++.|++.+       ..++++++.+|.... +.....+
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk-~-~~-v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~-l~~~~~~  164 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIAR-H-SS-VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEF-LKNAPEG  164 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHh-C-CC-CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHH-HhhccCC
Confidence            35678999999999999855554 3 22 258999999999999999976       246899999997543 1211136


Q ss_pred             cEeEEEEcccccchhh----HHHHHHHHHHhccCCCEEEEE
Q psy11646        104 KFNKIFSFYCLHWVQD----QRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       104 ~fD~Vis~~~l~~~~d----~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +||+|++-..-.+.+.    ...+++.+++.|+|||.++..
T Consensus       165 ~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        165 TYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             CCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            8999998554332221    246789999999999998754

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.74  E-value=1.4e-07  Score=81.97  Aligned_cols=119  Identities=18%  Similarity=0.242  Sum_probs=96.5

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc--cc
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN--LE   98 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~--l~   98 (433)
                      +.+.++..+.+..|.-|||+|.|+|.+|..+|+...++.  .++.++.|++......+++  +.+.++.+|+.+..  +.
T Consensus        36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~--~L~~iE~~~dF~~~L~~~~--p~~~ii~gda~~l~~~l~  111 (194)
T COG3963          36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPE--SLTAIEYSPDFVCHLNQLY--PGVNIINGDAFDLRTTLG  111 (194)
T ss_pred             HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCcc--ceEEEEeCHHHHHHHHHhC--CCccccccchhhHHHHHh
Confidence            445667777788899999999999999988888776665  8999999999999999988  56668888887754  44


Q ss_pred             ccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      +.....||.|+|...+-.++  ...+.++.+...|++||.++....+
T Consensus       112 e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg  158 (194)
T COG3963         112 EHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG  158 (194)
T ss_pred             hcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence            45567899999988876664  3456789999999999998877655

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.74  E-value=1.8e-07  Score=92.34  Aligned_cols=115  Identities=15%  Similarity=0.117  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEeccc
Q psy11646         17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIA   93 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~   93 (433)
                      .+..+++.+.+.+...++.+|||+|||+|.++..+ +.   .+ .+++|+|+|+.+++.|++++   +..+++|.++|+.
T Consensus       157 ~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~l-a~---~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~  231 (315)
T PRK03522        157 VAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHC-AT---PG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDST  231 (315)
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHH-Hh---cC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHH
Confidence            34455554444443335789999999999999444 43   22 58999999999999999887   3357999999987


Q ss_pred             CCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         94 DQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        94 ~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +...  ...+.||+|++...-..+   ...+.+....++|++.++++.
T Consensus       232 ~~~~--~~~~~~D~Vv~dPPr~G~---~~~~~~~l~~~~~~~ivyvsc  274 (315)
T PRK03522        232 QFAT--AQGEVPDLVLVNPPRRGI---GKELCDYLSQMAPRFILYSSC  274 (315)
T ss_pred             HHHH--hcCCCCeEEEECCCCCCc---cHHHHHHHHHcCCCeEEEEEC
Confidence            6421  122579999998763322   122223334467777666643

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.72  E-value=6e-08  Score=88.87  Aligned_cols=103  Identities=17%  Similarity=0.407  Sum_probs=77.4

Q ss_pred             EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccc-cccCcEeEEEEc
Q psy11646         36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLES-IFLAKFNKIFSF  111 (433)
Q Consensus        36 ~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~-~~~~~fD~Vis~  111 (433)
                      .+||||||.|.++ ..++...|..  .++|+|++...+..|.++.   ...|+.++++|+... +.. ..++++|.|..+
T Consensus        20 l~lEIG~G~G~~l-~~~A~~~Pd~--n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~-l~~~~~~~~v~~i~i~   95 (195)
T PF02390_consen   20 LILEIGCGKGEFL-IELAKRNPDI--NFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAREL-LRRLFPPGSVDRIYIN   95 (195)
T ss_dssp             EEEEET-TTSHHH-HHHHHHSTTS--EEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTH-HHHHSTTTSEEEEEEE
T ss_pred             eEEEecCCCCHHH-HHHHHHCCCC--CEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHH-HhhcccCCchheEEEe
Confidence            8999999999999 4555566654  9999999999999988877   668999999998764 333 334899999998


Q ss_pred             ccccchhh--------HHHHHHHHHHhccCCCEEEEEec
Q psy11646        112 YCLHWVQD--------QRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       112 ~~l~~~~d--------~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ++=-|...        ....+..+.++|+|||.+.+.+-
T Consensus        96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD  134 (195)
T PF02390_consen   96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD  134 (195)
T ss_dssp             S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred             CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence            87666532        35789999999999999988753

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PLN02476 O-methyltransferase

Probab=98.72  E-value=1.4e-07  Score=90.56  Aligned_cols=116  Identities=21%  Similarity=0.204  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEec
Q psy11646         16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVAN   91 (433)
Q Consensus        16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~D   91 (433)
                      +...+++..++..   .++.+|||||+|+|..+. .++...+.. .+++.+|.+++..+.|++++   + ..+++++.+|
T Consensus       104 ~~~g~lL~~L~~~---~~ak~VLEIGT~tGySal-~lA~al~~~-G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~Gd  178 (278)
T PLN02476        104 PDQAQLLAMLVQI---LGAERCIEVGVYTGYSSL-AVALVLPES-GCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGL  178 (278)
T ss_pred             HHHHHHHHHHHHh---cCCCeEEEecCCCCHHHH-HHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence            3444555555554   356799999999999995 444444444 48999999999999999988   2 3589999999


Q ss_pred             ccCCccccc----ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646         92 IADQNLESI----FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        92 i~~~~l~~~----~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +.+. ++..    ..++||+|+.-..   -.+....+..+.++|+|||.+++-
T Consensus       179 A~e~-L~~l~~~~~~~~FD~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        179 AAES-LKSMIQNGEGSSYDFAFVDAD---KRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             HHHH-HHHHHhcccCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEe
Confidence            8653 3321    1368999998543   234567788889999999998764

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.70  E-value=7.5e-08  Score=88.73  Aligned_cols=116  Identities=18%  Similarity=0.306  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEec
Q psy11646         16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVAN   91 (433)
Q Consensus        16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~D   91 (433)
                      +...++|..++...   ...+||||||++|..+. .++..++.+ .+++.+|+++...+.|++.+   + ..+++++.+|
T Consensus        31 ~~~g~lL~~l~~~~---~~k~vLEIGt~~GySal-~la~~l~~~-g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gd  105 (205)
T PF01596_consen   31 PETGQLLQMLVRLT---RPKRVLEIGTFTGYSAL-WLAEALPED-GKITTIEIDPERAEIARENFRKAGLDDRIEVIEGD  105 (205)
T ss_dssp             HHHHHHHHHHHHHH---T-SEEEEESTTTSHHHH-HHHHTSTTT-SEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-
T ss_pred             HHHHHHHHHHHHhc---CCceEEEeccccccHHH-HHHHhhccc-ceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEec
Confidence            44556777666654   46699999999999994 555555554 59999999999999999987   2 3689999999


Q ss_pred             ccCCccccc----ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646         92 IADQNLESI----FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        92 i~~~~l~~~----~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +.+. ++..    ..++||+|+.-..   -.+....+..+.++|+|||.+++-
T Consensus       106 a~~~-l~~l~~~~~~~~fD~VFiDa~---K~~y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  106 ALEV-LPELANDGEEGQFDFVFIDAD---KRNYLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             HHHH-HHHHHHTTTTTSEEEEEEEST---GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cHhh-HHHHHhccCCCceeEEEEccc---ccchhhHHHHHhhhccCCeEEEEc
Confidence            8653 2221    1258999998553   224566788888999999988764

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK03612 spermidine synthase; Provisional

Probab=98.70  E-value=1e-07  Score=100.20  Aligned_cols=106  Identities=20%  Similarity=0.230  Sum_probs=79.2

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----------CCCCeEEEEecccCCccccc
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----------TNPKLEFVVANIADQNLESI  100 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----------~~~~i~~~~~Di~~~~l~~~  100 (433)
                      ++++.+|||||||+|..+..+++ . +. ..+++++|+++++++.|+++.          .+++++++..|.... +. .
T Consensus       295 ~~~~~rVL~IG~G~G~~~~~ll~-~-~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~-l~-~  369 (521)
T PRK03612        295 SARPRRVLVLGGGDGLALREVLK-Y-PD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW-LR-K  369 (521)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHh-C-CC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH-HH-h
Confidence            35678999999999999965554 2 22 149999999999999999842          236899999998763 22 1


Q ss_pred             ccCcEeEEEEcccccchhh-----HHHHHHHHHHhccCCCEEEEEe
Q psy11646        101 FLAKFNKIFSFYCLHWVQD-----QRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d-----~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ..++||+|++...-.+.+.     ....++.+++.|+|||.+++..
T Consensus       370 ~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        370 LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence            2378999999865443221     2457899999999999988753

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.69  E-value=8e-08  Score=92.77  Aligned_cols=89  Identities=16%  Similarity=0.266  Sum_probs=68.8

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES   99 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~   99 (433)
                      .+++.+++.+...++.+|||||||+|.++..++. .   + .+++|+|+++.|++.+++++...+++++++|+.+.++++
T Consensus        29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~-~---~-~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~  103 (272)
T PRK00274         29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLE-R---A-AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSE  103 (272)
T ss_pred             HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHH-h---C-CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHH
Confidence            3455666666667889999999999999954443 3   2 389999999999999998874478999999998865543


Q ss_pred             cccCcEeEEEEcccccc
Q psy11646        100 IFLAKFNKIFSFYCLHW  116 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~  116 (433)
                         -.+|.|+++...+.
T Consensus       104 ---~~~~~vv~NlPY~i  117 (272)
T PRK00274        104 ---LQPLKVVANLPYNI  117 (272)
T ss_pred             ---cCcceEEEeCCccc
Confidence               11589999887654

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.68  E-value=4.5e-07  Score=88.95  Aligned_cols=81  Identities=19%  Similarity=0.242  Sum_probs=57.5

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CC----CCeEEEE-ecccCCcccc--cccCc
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TN----PKLEFVV-ANIADQNLES--IFLAK  104 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~----~~i~~~~-~Di~~~~l~~--~~~~~  104 (433)
                      ++.+|||||||+|... .+++...+.  ++++|+|+++.+++.|++++ ..    .++++.. .|.... +..  ...+.
T Consensus       114 ~~~~vLDIGtGag~I~-~lLa~~~~~--~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i-~~~i~~~~~~  189 (321)
T PRK11727        114 ANVRVLDIGVGANCIY-PLIGVHEYG--WRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAI-FKGIIHKNER  189 (321)
T ss_pred             CCceEEEecCCccHHH-HHHHhhCCC--CEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhh-hhcccccCCc
Confidence            5679999999999887 555544432  69999999999999999988 22    3566653 232221 111  12368


Q ss_pred             EeEEEEcccccch
Q psy11646        105 FNKIFSFYCLHWV  117 (433)
Q Consensus       105 fD~Vis~~~l~~~  117 (433)
                      ||+|+|+..+|.-
T Consensus       190 fDlivcNPPf~~s  202 (321)
T PRK11727        190 FDATLCNPPFHAS  202 (321)
T ss_pred             eEEEEeCCCCcCc
Confidence            9999999998854

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.65  E-value=1.7e-07  Score=89.82  Aligned_cols=88  Identities=19%  Similarity=0.397  Sum_probs=69.0

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCccc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLE   98 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~   98 (433)
                      .+++.+++.+...++.+|||||||+|.++..++. .   + .+++++|+++.+++.+++++ ...+++++++|+...+++
T Consensus        16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~-~---~-~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~   90 (258)
T PRK14896         16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAK-R---A-KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP   90 (258)
T ss_pred             HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHH-h---C-CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch
Confidence            4455556666667889999999999999955544 2   2 48999999999999999987 346899999999875443


Q ss_pred             ccccCcEeEEEEcccccch
Q psy11646         99 SIFLAKFNKIFSFYCLHWV  117 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~  117 (433)
                           .||.|+++..++..
T Consensus        91 -----~~d~Vv~NlPy~i~  104 (258)
T PRK14896         91 -----EFNKVVSNLPYQIS  104 (258)
T ss_pred             -----hceEEEEcCCcccC
Confidence                 47999999887653

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.64  E-value=9.3e-08  Score=92.33  Aligned_cols=105  Identities=16%  Similarity=0.268  Sum_probs=78.0

Q ss_pred             CCEEEEECCCCCh--hHHHHhc-ccCC--CCCcEEEEEeCCHHHHHHHHhhc-C--------------------------
Q psy11646         34 NESVLDVGCGPGN--VTSKLLL-PNLP--KSVVKLVGLDVSPNMIKHAKNHH-T--------------------------   81 (433)
Q Consensus        34 ~~~VLDIGcG~G~--~~~~~l~-~~~~--~~~~~v~gvDiS~~~l~~A~~~~-~--------------------------   81 (433)
                      ..+|+..||++|.  ++..++. ...+  ....+|+|+|+|+.+++.|++-. .                          
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            4799999999995  3333332 2221  11368999999999999998753 0                          


Q ss_pred             -------CCCeEEEEecccCCcccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEE
Q psy11646         82 -------NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        82 -------~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~  140 (433)
                             ...|+|.+.|+.+.+.+  ..+.||+|+|.+++.|+.  ....+++++++.|+|||++++.
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~--~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWA--VPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCc--cCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                   03467888888764332  137899999999998884  4788999999999999988774

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=2.5e-07  Score=82.32  Aligned_cols=74  Identities=24%  Similarity=0.428  Sum_probs=60.4

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      -.|.+|+|+|||||.++...+  +++.  .+|+|+|+.+++++.++++.  ...++.|...|+++..      +.+|.|+
T Consensus        44 l~g~~V~DlG~GTG~La~ga~--~lGa--~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~------~~~dtvi  113 (198)
T COG2263          44 LEGKTVLDLGAGTGILAIGAA--LLGA--SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR------GKFDTVI  113 (198)
T ss_pred             cCCCEEEEcCCCcCHHHHHHH--hcCC--cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC------CccceEE
Confidence            357789999999999984332  3333  49999999999999999998  4467999999998753      7789999


Q ss_pred             Eccccc
Q psy11646        110 SFYCLH  115 (433)
Q Consensus       110 s~~~l~  115 (433)
                      +|..+-
T Consensus       114 mNPPFG  119 (198)
T COG2263         114 MNPPFG  119 (198)
T ss_pred             ECCCCc
Confidence            998875

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.57  E-value=3.2e-07  Score=94.44  Aligned_cols=117  Identities=19%  Similarity=0.247  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEec
Q psy11646         15 QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVAN   91 (433)
Q Consensus        15 ~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~D   91 (433)
                      ...+..+++.+.+.+...++.+|||+|||+|.++.. +++.    ..+++|+|+++.|++.|++++   +..+++++.+|
T Consensus       274 ~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~-la~~----~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d  348 (431)
T TIGR00479       274 SGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLP-LAKQ----AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGT  348 (431)
T ss_pred             HHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHH-HHHh----CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCC
Confidence            345556666666666666778999999999999954 4432    248999999999999999987   34689999999


Q ss_pred             ccCCcccc--cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646         92 IADQNLES--IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        92 i~~~~l~~--~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +.+. ++.  ....+||+|++...-..+  ...+++.+. .++|++.++++
T Consensus       349 ~~~~-l~~~~~~~~~~D~vi~dPPr~G~--~~~~l~~l~-~l~~~~ivyvs  395 (431)
T TIGR00479       349 LETV-LPKQPWAGQIPDVLLLDPPRKGC--AAEVLRTII-ELKPERIVYVS  395 (431)
T ss_pred             HHHH-HHHHHhcCCCCCEEEECcCCCCC--CHHHHHHHH-hcCCCEEEEEc
Confidence            8653 222  123579999987663221  244555544 37888876664

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.57  E-value=5.2e-07  Score=84.21  Aligned_cols=103  Identities=17%  Similarity=0.334  Sum_probs=82.7

Q ss_pred             CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CC-CCeEEEEecccCCcccccc-cCcEeEEEE
Q psy11646         35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TN-PKLEFVVANIADQNLESIF-LAKFNKIFS  110 (433)
Q Consensus        35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~-~~i~~~~~Di~~~~l~~~~-~~~fD~Vis  110 (433)
                      ..+||||||.|.++ .-+++..|..  .++|+|+....+..|.++.  .. .|+.+.+.|+... +.... +++.|.|..
T Consensus        50 pi~lEIGfG~G~~l-~~~A~~nP~~--nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~-l~~~~~~~sl~~I~i  125 (227)
T COG0220          50 PIVLEIGFGMGEFL-VEMAKKNPEK--NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEV-LDYLIPDGSLDKIYI  125 (227)
T ss_pred             cEEEEECCCCCHHH-HHHHHHCCCC--CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHH-HHhcCCCCCeeEEEE
Confidence            57999999999999 5566667765  8999999999999998887  23 3899999998764 34333 359999999


Q ss_pred             cccccchhh--------HHHHHHHHHHhccCCCEEEEEe
Q psy11646        111 FYCLHWVQD--------QRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       111 ~~~l~~~~d--------~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ++.=-|...        ....++.+.+.|+|||.+.+.+
T Consensus       126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT  164 (227)
T COG0220         126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT  164 (227)
T ss_pred             ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence            987766532        3578999999999999999875

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.56  E-value=7.1e-07  Score=85.26  Aligned_cols=87  Identities=18%  Similarity=0.350  Sum_probs=67.7

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCccc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLE   98 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~   98 (433)
                      .++..+++.+...++.+|||||||+|.++..+ ++..    .+++++|+++.+++.+++++ ...++++..+|+...+++
T Consensus        16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L-~~~~----~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~   90 (253)
T TIGR00755        16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPL-LKRA----KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP   90 (253)
T ss_pred             HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHH-HHhC----CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh
Confidence            45556666676778899999999999999444 4332    37999999999999999887 346899999999876543


Q ss_pred             ccccCcEe---EEEEcccccc
Q psy11646         99 SIFLAKFN---KIFSFYCLHW  116 (433)
Q Consensus        99 ~~~~~~fD---~Vis~~~l~~  116 (433)
                           .+|   +|+++..++.
T Consensus        91 -----~~d~~~~vvsNlPy~i  106 (253)
T TIGR00755        91 -----DFPKQLKVVSNLPYNI  106 (253)
T ss_pred             -----HcCCcceEEEcCChhh
Confidence                 355   8888887664

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.55  E-value=2.1e-06  Score=81.53  Aligned_cols=136  Identities=15%  Similarity=0.200  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHhcCC-CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCe-EEEEec
Q psy11646         17 DAAKLLSQYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKL-EFVVAN   91 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i-~~~~~D   91 (433)
                      ..++++...+..+.. ....+||||.||.|.....++...- ....++...|.|+..++..++..   +..++ +|.++|
T Consensus       118 ~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~-~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~d  196 (311)
T PF12147_consen  118 HLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHP-ERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGD  196 (311)
T ss_pred             HHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCC-CCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecC
Confidence            455666666666543 3577999999999999877776543 32258999999999999998887   33455 999999


Q ss_pred             ccCCcccccccCcEeEEEEcccccchhh---HHHHHHHHHHhccCCCEEEEEeccCCchhhHHHh
Q psy11646         92 IADQNLESIFLAKFNKIFSFYCLHWVQD---QRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEK  153 (433)
Q Consensus        92 i~~~~l~~~~~~~fD~Vis~~~l~~~~d---~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~  153 (433)
                      +.+..--.......++++++..++.++|   ....+..+.+.+.|||.++.+.-..+|-.+...+
T Consensus       197 Afd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr  261 (311)
T PF12147_consen  197 AFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIAR  261 (311)
T ss_pred             CCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHH
Confidence            8663211122356799999999988876   4567999999999999999887666776665544

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.54  E-value=7e-07  Score=90.13  Aligned_cols=116  Identities=13%  Similarity=0.090  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecc
Q psy11646         16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANI   92 (433)
Q Consensus        16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di   92 (433)
                      ..++.++..+.+.+...++.+|||+|||+|.++..++.    .+ .+++|+|+++.+++.|++++   +..+++|..+|+
T Consensus       216 ~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~----~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~  290 (374)
T TIGR02085       216 KVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAG----PD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS  290 (374)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhh----cC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH
Confidence            34444444444443333567999999999999844442    23 58999999999999999987   335789999998


Q ss_pred             cCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         93 ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        93 ~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .+.. .. ...+||+|++...-..+  ...++..+. .++|++.+++..
T Consensus       291 ~~~~-~~-~~~~~D~vi~DPPr~G~--~~~~l~~l~-~~~p~~ivyvsc  334 (374)
T TIGR02085       291 AKFA-TA-QMSAPELVLVNPPRRGI--GKELCDYLS-QMAPKFILYSSC  334 (374)
T ss_pred             HHHH-Hh-cCCCCCEEEECCCCCCC--cHHHHHHHH-hcCCCeEEEEEe
Confidence            6532 11 12469999998875422  234445554 478988777753

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.53  E-value=8.3e-07  Score=84.74  Aligned_cols=105  Identities=25%  Similarity=0.418  Sum_probs=78.0

Q ss_pred             CCCEEEEECCCCCh--hHHHH-hcccCCC---CCcEEEEEeCCHHHHHHHHhhc-C---------------------C--
Q psy11646         33 DNESVLDVGCGPGN--VTSKL-LLPNLPK---SVVKLVGLDVSPNMIKHAKNHH-T---------------------N--   82 (433)
Q Consensus        33 ~~~~VLDIGcG~G~--~~~~~-l~~~~~~---~~~~v~gvDiS~~~l~~A~~~~-~---------------------~--   82 (433)
                      ...+|+-.||+||.  ++..+ +....+.   ...+++|+|||..+++.|+.-. .                     .  
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            36799999999994  33333 3333332   2368999999999999996543 1                     0  


Q ss_pred             --------CCeEEEEecccCCcccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEE
Q psy11646         83 --------PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        83 --------~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~  140 (433)
                              ..|.|.+.|+...+.   ..+.||+|+|-+++-++.  .+.++++.++..|+|||.|++.
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence                    136677777766542   237899999999998885  4678999999999999999884

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.53  E-value=2.6e-07  Score=83.73  Aligned_cols=102  Identities=19%  Similarity=0.248  Sum_probs=64.7

Q ss_pred             HHHHHHHHhcCCCC-CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc
Q psy11646         20 KLLSQYIDQFKWTD-NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE   98 (433)
Q Consensus        20 ~ll~~l~~~l~~~~-~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~   98 (433)
                      .-++.+++.+...| +..|.|+|||.+.++ ..+.    .. .+|...|+-+.            +-.+..+|+...|++
T Consensus        58 nPvd~iI~~l~~~~~~~viaD~GCGdA~la-~~~~----~~-~~V~SfDLva~------------n~~Vtacdia~vPL~  119 (219)
T PF05148_consen   58 NPVDVIIEWLKKRPKSLVIADFGCGDAKLA-KAVP----NK-HKVHSFDLVAP------------NPRVTACDIANVPLE  119 (219)
T ss_dssp             -HHHHHHHHHCTS-TTS-EEEES-TT-HHH-HH------S----EEEEESS-S------------STTEEES-TTS-S--
T ss_pred             CcHHHHHHHHHhcCCCEEEEECCCchHHHH-Hhcc----cC-ceEEEeeccCC------------CCCEEEecCccCcCC
Confidence            34455555555444 578999999999887 3332    32 57999998652            234678999998887


Q ss_pred             ccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      +   ++.|+++.+.+|... |....+++..|+|||||.+.+++..
T Consensus       120 ~---~svDv~VfcLSLMGT-n~~~fi~EA~RvLK~~G~L~IAEV~  160 (219)
T PF05148_consen  120 D---ESVDVAVFCLSLMGT-NWPDFIREANRVLKPGGILKIAEVK  160 (219)
T ss_dssp             T---T-EEEEEEES---SS--HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             C---CceeEEEEEhhhhCC-CcHHHHHHHHheeccCcEEEEEEec
Confidence            6   999999999888764 7888999999999999999998754

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.52  E-value=9.8e-07  Score=83.56  Aligned_cols=116  Identities=15%  Similarity=0.209  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEec
Q psy11646         16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVAN   91 (433)
Q Consensus        16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~D   91 (433)
                      +...++|..+++..   +..+|||||+++|..+..+ +...+.. .+++.+|.+++..+.|++.+    ...+|+++.+|
T Consensus        65 ~~~g~lL~~l~~~~---~ak~iLEiGT~~GySal~l-a~al~~~-g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~  139 (247)
T PLN02589         65 ADEGQFLNMLLKLI---NAKNTMEIGVYTGYSLLAT-ALALPED-GKILAMDINRENYELGLPVIQKAGVAHKIDFREGP  139 (247)
T ss_pred             HHHHHHHHHHHHHh---CCCEEEEEeChhhHHHHHH-HhhCCCC-CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEecc
Confidence            34456666666553   4569999999999998544 4444443 49999999999999999988    24789999999


Q ss_pred             ccCCcccccc-----cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646         92 IADQNLESIF-----LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        92 i~~~~l~~~~-----~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +.+. ++...     .++||+|+.-.-   -......+..+.++|+|||.+++-
T Consensus       140 a~e~-L~~l~~~~~~~~~fD~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        140 ALPV-LDQMIEDGKYHGTFDFIFVDAD---KDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             HHHH-HHHHHhccccCCcccEEEecCC---HHHhHHHHHHHHHhcCCCeEEEEc
Confidence            7653 33211     268999998543   123456677788999999997763

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.48  E-value=5.7e-07  Score=87.54  Aligned_cols=89  Identities=21%  Similarity=0.398  Sum_probs=70.0

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC----CCCeEEEEecccCC
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----NPKLEFVVANIADQ   95 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~----~~~i~~~~~Di~~~   95 (433)
                      .++..+++.+...++.+|||||||+|.++..++. .   + .+++++|+++.|++.+++++.    ..+++++.+|+...
T Consensus        23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~-~---~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~   97 (294)
T PTZ00338         23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQ-L---A-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT   97 (294)
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHH-h---C-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence            4555666666777889999999999999955544 2   2 489999999999999998871    46799999999765


Q ss_pred             cccccccCcEeEEEEcccccchh
Q psy11646         96 NLESIFLAKFNKIFSFYCLHWVQ  118 (433)
Q Consensus        96 ~l~~~~~~~fD~Vis~~~l~~~~  118 (433)
                      .+     ..||+|+++..++...
T Consensus        98 ~~-----~~~d~VvaNlPY~Ist  115 (294)
T PTZ00338         98 EF-----PYFDVCVANVPYQISS  115 (294)
T ss_pred             cc-----cccCEEEecCCcccCc
Confidence            43     4689999988877653

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.46  E-value=2.2e-06  Score=80.16  Aligned_cols=108  Identities=24%  Similarity=0.371  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHhcCCC-CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHH-HHhhcCCCCeE-EEEecccC
Q psy11646         18 AAKLLSQYIDQFKWT-DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKH-AKNHHTNPKLE-FVVANIAD   94 (433)
Q Consensus        18 ~~~ll~~l~~~l~~~-~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~-A~~~~~~~~i~-~~~~Di~~   94 (433)
                      ....+..+++.+... ++.+|||+|||+|.++. .+++.   +..+|+|+|+++.|+.. .++.   +++. +...|+..
T Consensus        59 ~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~-~l~~~---ga~~v~avD~~~~~l~~~l~~~---~~v~~~~~~ni~~  131 (228)
T TIGR00478        59 GGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTD-CALQK---GAKEVYGVDVGYNQLAEKLRQD---ERVKVLERTNIRY  131 (228)
T ss_pred             hHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHH-HHHHc---CCCEEEEEeCCHHHHHHHHhcC---CCeeEeecCCccc
Confidence            344455667766653 67899999999999994 44432   23589999999988876 3332   3432 44445553


Q ss_pred             Cccccc--ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         95 QNLESI--FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        95 ~~l~~~--~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ....+.  .-..+|+++++..+        .+..+.++|+| |.+++..
T Consensus       132 ~~~~~~~~d~~~~DvsfiS~~~--------~l~~i~~~l~~-~~~~~L~  171 (228)
T TIGR00478       132 VTPADIFPDFATFDVSFISLIS--------ILPELDLLLNP-NDLTLLF  171 (228)
T ss_pred             CCHhHcCCCceeeeEEEeehHh--------HHHHHHHHhCc-CeEEEEc
Confidence            221111  11467877765443        47789999999 8777654

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.45  E-value=1.8e-06  Score=83.38  Aligned_cols=132  Identities=19%  Similarity=0.227  Sum_probs=88.6

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEE--EEe
Q psy11646         14 QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEF--VVA   90 (433)
Q Consensus        14 ~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~--~~~   90 (433)
                      ......++|.++...+....+.+|||+|||+|..+ ..+...++ ...+++++|.|+.|++.++... .......  ...
T Consensus        14 ~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~-wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~   91 (274)
T PF09243_consen   14 TYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTAL-WAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRR   91 (274)
T ss_pred             HHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHH-HHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhh
Confidence            33466788888888776556779999999999877 55566666 4468999999999999998876 1111110  011


Q ss_pred             cccCCcccccccCcEeEEEEcccccchhh--HHHHHHHHHHhccCCCEEEEEeccCCchhhHHH
Q psy11646         91 NIADQNLESIFLAKFNKIFSFYCLHWVQD--QRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYE  152 (433)
Q Consensus        91 Di~~~~l~~~~~~~fD~Vis~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~  152 (433)
                      .......+   ....|+|++.++|..+++  ...+++++.+.+.+  .|++++++....+....
T Consensus        92 ~~~~~~~~---~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~  150 (274)
T PF09243_consen   92 VLYRDFLP---FPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIA  150 (274)
T ss_pred             hhhccccc---CCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHH
Confidence            11110011   123499999999988865  44567777777765  88888877655444443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG1500|consensus

Probab=98.45  E-value=1.1e-06  Score=84.25  Aligned_cols=108  Identities=19%  Similarity=0.226  Sum_probs=78.1

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccc
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLES   99 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~   99 (433)
                      .+++...-..+..|||+|||+|.++ .+++.   .|..+|++++-| +|.+.|++..    ...+|.++.+.+++..+| 
T Consensus       168 Ail~N~sDF~~kiVlDVGaGSGILS-~FAaq---AGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-  241 (517)
T KOG1500|consen  168 AILENHSDFQDKIVLDVGAGSGILS-FFAAQ---AGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-  241 (517)
T ss_pred             HHHhcccccCCcEEEEecCCccHHH-HHHHH---hCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-
Confidence            3444443346788999999999998 44443   233589999977 6999999887    236888999999887777 


Q ss_pred             cccCcEeEEEEccccc--chhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        100 IFLAKFNKIFSFYCLH--WVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~--~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                         ++.|+||+-..=.  .-+..-...-..++.|+|.|.++-+
T Consensus       242 ---Ek~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT  281 (517)
T KOG1500|consen  242 ---EKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFPT  281 (517)
T ss_pred             ---hhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence               7999999854322  2233334455667999999998754

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.42  E-value=2.5e-06  Score=88.05  Aligned_cols=113  Identities=18%  Similarity=0.259  Sum_probs=81.9

Q ss_pred             CCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEe
Q psy11646         30 KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFN  106 (433)
Q Consensus        30 ~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD  106 (433)
                      ...++.+|||++||+|.-+..+++ ..... ..+++.|+++..++..++++   +..++.+...|....  .....+.||
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~-~l~~~-g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~--~~~~~~~fD  185 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAA-LMNNQ-GAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF--GAALPETFD  185 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHH-HcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh--hhhchhhcC
Confidence            457899999999999999955544 44333 38999999999999998887   456777777787643  222236799


Q ss_pred             EEEEccc------cc--------ch--------hhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        107 KIFSFYC------LH--------WV--------QDQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       107 ~Vis~~~------l~--------~~--------~d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      .|+.-..      +.        |.        .-+...+.++.++|||||+|+.++.+..+
T Consensus       186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~  247 (470)
T PRK11933        186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR  247 (470)
T ss_pred             eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence            9995221      11        11        11356789999999999999988776555

>KOG1499|consensus

Probab=98.42  E-value=1.2e-06  Score=85.07  Aligned_cols=100  Identities=19%  Similarity=0.293  Sum_probs=74.1

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      -.+..|||+|||+|.++ .+.++.   |..+|+++|.|. +++.|++..    ....++++++.+++..+|.   ++.|+
T Consensus        59 f~dK~VlDVGcGtGILS-~F~akA---GA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~---eKVDi  130 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILS-MFAAKA---GARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPV---EKVDI  130 (346)
T ss_pred             cCCCEEEEcCCCccHHH-HHHHHh---CcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCc---cceeE
Confidence            46889999999999998 555543   335899999886 448888876    2345889999998876663   89999


Q ss_pred             EEEcccccch--h-hHHHHHHHHHHhccCCCEEEE
Q psy11646        108 IFSFYCLHWV--Q-DQRQAISNIYNLLMPGGEVLL  139 (433)
Q Consensus       108 Vis~~~l~~~--~-d~~~~l~~i~~~LkpGG~lll  139 (433)
                      |+|-+.=+++  + -...++-.--+.|+|||.++=
T Consensus       131 IvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P  165 (346)
T KOG1499|consen  131 IVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP  165 (346)
T ss_pred             EeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence            9996654433  2 245555556689999998763

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.41  E-value=1.7e-06  Score=78.91  Aligned_cols=118  Identities=11%  Similarity=0.000  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHhcCC-CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecc
Q psy11646         18 AAKLLSQYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANI   92 (433)
Q Consensus        18 ~~~ll~~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di   92 (433)
                      ...+.+.+...+.. -.+.+|||++||+|.++..++.    .+..+++++|.++.+++.+++++   . ..+++++..|+
T Consensus        33 ~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~s----rga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~  108 (189)
T TIGR00095        33 TRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALS----RGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSA  108 (189)
T ss_pred             hHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhH
Confidence            33444444444321 2578999999999999966655    33248999999999999999987   2 24688999998


Q ss_pred             cCCccccc-cc-CcEeEEEEcccccchhhHHHHHHHH--HHhccCCCEEEEEe
Q psy11646         93 ADQNLESI-FL-AKFNKIFSFYCLHWVQDQRQAISNI--YNLLMPGGEVLLLL  141 (433)
Q Consensus        93 ~~~~l~~~-~~-~~fD~Vis~~~l~~~~d~~~~l~~i--~~~LkpGG~lll~~  141 (433)
                      ... +... .. ..||+|+.-..+.. .....++..+  ..+|+++|.+++-.
T Consensus       109 ~~~-l~~~~~~~~~~dvv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~  159 (189)
T TIGR00095       109 LRA-LKFLAKKPTFDNVIYLDPPFFN-GALQALLELCENNWILEDTVLIVVEE  159 (189)
T ss_pred             HHH-HHHhhccCCCceEEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            543 2211 11 24788888776643 2233334333  34788898777643

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.39  E-value=3.1e-06  Score=86.97  Aligned_cols=101  Identities=20%  Similarity=0.297  Sum_probs=68.6

Q ss_pred             CCEEEEECCCCChhHHHHhcccC-CCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeEE
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNL-PKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNKI  108 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~-~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~V  108 (433)
                      +..|||||||+|-++...+.... ..+..+|++++-++.+....+++.    ...+|+++.+|+++..++    +++|+|
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp----ekvDII  262 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP----EKVDII  262 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS----S-EEEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC----CceeEE
Confidence            56899999999999844433210 011259999999998887765542    347899999999998766    699999


Q ss_pred             EEcc--cccchhhHHHHHHHHHHhccCCCEEE
Q psy11646        109 FSFY--CLHWVQDQRQAISNIYNLLMPGGEVL  138 (433)
Q Consensus       109 is~~--~l~~~~d~~~~l~~i~~~LkpGG~ll  138 (433)
                      +|=.  .+-.-+-....+....+.|||||.++
T Consensus       263 VSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  263 VSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             EE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             EEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            9832  22221234456888899999999765

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>KOG1661|consensus

Probab=98.39  E-value=1.5e-06  Score=78.39  Aligned_cols=101  Identities=22%  Similarity=0.337  Sum_probs=76.8

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--C-----------CCCeEEEEecccCCcc
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--T-----------NPKLEFVVANIADQNL   97 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~-----------~~~i~~~~~Di~~~~l   97 (433)
                      +.||.+.||+|+|+|.++ ..++......+...+|+|.-++.++.+++++  .           ..++.+.++|.....-
T Consensus        80 L~pG~s~LdvGsGSGYLt-~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~  158 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLT-ACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA  158 (237)
T ss_pred             hccCcceeecCCCccHHH-HHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence            378999999999999999 5666554444345699999999999999987  1           2457788888776543


Q ss_pred             cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +.   .+||.|.+....      ...-+++.+.|+|||.+++..
T Consensus       159 e~---a~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip~  193 (237)
T KOG1661|consen  159 EQ---APYDAIHVGAAA------SELPQELLDQLKPGGRLLIPV  193 (237)
T ss_pred             cc---CCcceEEEccCc------cccHHHHHHhhccCCeEEEee
Confidence            33   789999997543      334567788999999998854

>PRK04148 hypothetical protein; Provisional

Probab=98.39  E-value=4.3e-06  Score=71.23  Aligned_cols=106  Identities=17%  Similarity=0.230  Sum_probs=71.9

Q ss_pred             HHHHhcCCCCCCEEEEECCCCCh-hHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccccccc
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGN-VTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFL  102 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~-~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~  102 (433)
                      .+.+.+....+.+|||||||+|. .+ ..|++   .+ .+|+++|+++.+++.|+++    .+++.+.|+.+..+.  .-
T Consensus         7 ~l~~~~~~~~~~kileIG~GfG~~vA-~~L~~---~G-~~ViaIDi~~~aV~~a~~~----~~~~v~dDlf~p~~~--~y   75 (134)
T PRK04148          7 FIAENYEKGKNKKIVELGIGFYFKVA-KKLKE---SG-FDVIVIDINEKAVEKAKKL----GLNAFVDDLFNPNLE--IY   75 (134)
T ss_pred             HHHHhcccccCCEEEEEEecCCHHHH-HHHHH---CC-CEEEEEECCHHHHHHHHHh----CCeEEECcCCCCCHH--HH
Confidence            34444444567899999999996 55 55552   23 6999999999999999886    578899999764332  23


Q ss_pred             CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646        103 AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      +.+|+|.+...=   ++....+.++.+..  |.-+++..++..
T Consensus        76 ~~a~liysirpp---~el~~~~~~la~~~--~~~~~i~~l~~e  113 (134)
T PRK04148         76 KNAKLIYSIRPP---RDLQPFILELAKKI--NVPLIIKPLSGE  113 (134)
T ss_pred             hcCCEEEEeCCC---HHHHHHHHHHHHHc--CCCEEEEcCCCC
Confidence            678999987662   23344455555443  455666554433

>KOG3045|consensus

Probab=98.38  E-value=7.7e-07  Score=82.51  Aligned_cols=102  Identities=19%  Similarity=0.277  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHhcCCCC-CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc
Q psy11646         18 AAKLLSQYIDQFKWTD-NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN   96 (433)
Q Consensus        18 ~~~ll~~l~~~l~~~~-~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~   96 (433)
                      ...-++.+++.+...+ ...|.|+|||-+.++.        .....|+..|+-+            .+-+++.+|+...|
T Consensus       164 P~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~--------~~~~kV~SfDL~a------------~~~~V~~cDm~~vP  223 (325)
T KOG3045|consen  164 PENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS--------SERHKVHSFDLVA------------VNERVIACDMRNVP  223 (325)
T ss_pred             CCChHHHHHHHHHhCcCceEEEecccchhhhhh--------ccccceeeeeeec------------CCCceeeccccCCc
Confidence            3445666777776655 5678999999988762        1114789998754            24567889999988


Q ss_pred             ccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         97 LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        97 l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      +++   ++.|+++.+.+|.. .|+...+++++|+|++||.+.+++..
T Consensus       224 l~d---~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~  266 (325)
T KOG3045|consen  224 LED---ESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVK  266 (325)
T ss_pred             Ccc---CcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehh
Confidence            876   99999998887765 37888999999999999999998643

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.34  E-value=4.2e-06  Score=83.96  Aligned_cols=106  Identities=18%  Similarity=0.200  Sum_probs=80.9

Q ss_pred             CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-----CCCCeEEEEecccCCcccc--cccCcEe
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-----TNPKLEFVVANIADQNLES--IFLAKFN  106 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-----~~~~i~~~~~Di~~~~l~~--~~~~~fD  106 (433)
                      |.+||++-|=||.++..++.    .|..++|++|.|..+++.|++++     ...++.|+++|+-+. +..  ....+||
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~----gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~-l~~~~~~g~~fD  292 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAAL----GGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW-LRKAERRGEKFD  292 (393)
T ss_pred             CCeEEEecccCcHHHHHHHh----cCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHH-HHHHHhcCCccc
Confidence            89999999999999954443    33349999999999999999998     235678999998764 332  2235899


Q ss_pred             EEEEcccc---------cchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646        107 KIFSFYCL---------HWVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       107 ~Vis~~~l---------~~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      +|+.-.+-         .-..+....+..+.++|+|||.+++.....
T Consensus       293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            99984432         122456778899999999999998876443

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.33  E-value=8.7e-07  Score=80.32  Aligned_cols=105  Identities=19%  Similarity=0.170  Sum_probs=74.9

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCccccc--ccCcEe
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNLESI--FLAKFN  106 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l~~~--~~~~fD  106 (433)
                      ++.++||+-||+|.++.+++.    +|..+++.+|.++.++...++++   . ..+++++..|.... +...  ...+||
T Consensus        42 ~g~~vLDLFaGSGalGlEALS----RGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~-l~~~~~~~~~fD  116 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALS----RGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKF-LLKLAKKGEKFD  116 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHH----TT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHH-HHHHHHCTS-EE
T ss_pred             CCCeEEEcCCccCccHHHHHh----cCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHH-HHhhcccCCCce
Confidence            688999999999999988876    45569999999999999999998   2 23588888886543 2221  348899


Q ss_pred             EEEEcccccchhhHHHHHHHHH--HhccCCCEEEEEec
Q psy11646        107 KIFSFYCLHWVQDQRQAISNIY--NLLMPGGEVLLLLN  142 (433)
Q Consensus       107 ~Vis~~~l~~~~d~~~~l~~i~--~~LkpGG~lll~~~  142 (433)
                      +|++-.+...-.....++..+.  .+|+++|.+++-..
T Consensus       117 iIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~  154 (183)
T PF03602_consen  117 IIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHS  154 (183)
T ss_dssp             EEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             EEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence            9999888765432366666666  89999998887543

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.27  E-value=3.1e-06  Score=82.05  Aligned_cols=93  Identities=20%  Similarity=0.259  Sum_probs=68.7

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC-CCCeEEEEecccCCcccc
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT-NPKLEFVVANIADQNLES   99 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~-~~~i~~~~~Di~~~~l~~   99 (433)
                      ++.++++.+...++..+||.+||.|..+..++. ..+.. .+|+|+|.++.|++.|++++. ..++++++.|..+.....
T Consensus         7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~-~~~~~-g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l   84 (296)
T PRK00050          7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILE-RLGPK-GRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVL   84 (296)
T ss_pred             cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHH-hCCCC-CEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHH
Confidence            456777777778889999999999999955554 44422 499999999999999998873 257999999987642110


Q ss_pred             cc-cCcEeEEEEccccc
Q psy11646        100 IF-LAKFNKIFSFYCLH  115 (433)
Q Consensus       100 ~~-~~~fD~Vis~~~l~  115 (433)
                      .. ..++|.|++...+.
T Consensus        85 ~~~~~~vDgIl~DLGvS  101 (296)
T PRK00050         85 AEGLGKVDGILLDLGVS  101 (296)
T ss_pred             HcCCCccCEEEECCCcc
Confidence            01 12799999866543

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.27  E-value=8.6e-06  Score=78.62  Aligned_cols=117  Identities=18%  Similarity=0.225  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-----CCCCeEEEEe
Q psy11646         16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-----TNPKLEFVVA   90 (433)
Q Consensus        16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-----~~~~i~~~~~   90 (433)
                      +..+..+..+      ..+.+|||+=|=||.++...++    .+..+|+.+|.|..+++.|++++     ...+++|++.
T Consensus       112 R~nR~~v~~~------~~gkrvLnlFsYTGgfsv~Aa~----gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~  181 (286)
T PF10672_consen  112 RENRKWVRKY------AKGKRVLNLFSYTGGFSVAAAA----GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQG  181 (286)
T ss_dssp             HHHHHHHHHH------CTTCEEEEET-TTTHHHHHHHH----TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES
T ss_pred             HhhHHHHHHH------cCCCceEEecCCCCHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEec
Confidence            3445554443      3478999999999999955443    34358999999999999999998     2357899999


Q ss_pred             cccCCcccc-cccCcEeEEEEccccc------chhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         91 NIADQNLES-IFLAKFNKIFSFYCLH------WVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        91 Di~~~~l~~-~~~~~fD~Vis~~~l~------~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      |+.+. +.. ...++||+|++-.+-.      -..+....+..+.++|+|||.++.....
T Consensus       182 Dvf~~-l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs  240 (286)
T PF10672_consen  182 DVFKF-LKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS  240 (286)
T ss_dssp             -HHHH-HHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred             CHHHH-HHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            98653 222 2247899999854321      1235677889999999999998876544

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.26  E-value=6.8e-07  Score=90.60  Aligned_cols=112  Identities=20%  Similarity=0.350  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHhcCC--C-CC-CEEEEECCCCChhHHHHhcccCCCCCcEEEEE-----eCCHHHHHHHHhhcCCCCeEEE
Q psy11646         18 AAKLLSQYIDQFKW--T-DN-ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGL-----DVSPNMIKHAKNHHTNPKLEFV   88 (433)
Q Consensus        18 ~~~ll~~l~~~l~~--~-~~-~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gv-----DiS~~~l~~A~~~~~~~~i~~~   88 (433)
                      +...++.+.+.+..  . .+ ..+||+|||.|+++..++.    .   .|+.+     |..+..++.|.++-    +-..
T Consensus        98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~----r---~V~t~s~a~~d~~~~qvqfaleRG----vpa~  166 (506)
T PF03141_consen   98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLE----R---NVTTMSFAPNDEHEAQVQFALERG----VPAM  166 (506)
T ss_pred             HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhh----C---CceEEEcccccCCchhhhhhhhcC----cchh
Confidence            33444444444433  2 22 2589999999999955543    2   23333     45556777777663    3322


Q ss_pred             Eecc--cCCcccccccCcEeEEEEccccc-chhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         89 VANI--ADQNLESIFLAKFNKIFSFYCLH-WVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        89 ~~Di--~~~~l~~~~~~~fD~Vis~~~l~-~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      .+-+  ..+|+++   +.||+|.|..++. |..+-...|-++.|+|||||+++++.+.
T Consensus       167 ~~~~~s~rLPfp~---~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~pp  221 (506)
T PF03141_consen  167 IGVLGSQRLPFPS---NAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPP  221 (506)
T ss_pred             hhhhccccccCCc---cchhhhhcccccccchhcccceeehhhhhhccCceEEecCCc
Confidence            2222  3445554   9999999999875 4455566789999999999999987543

; GO: 0008168 methyltransferase activity

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.24  E-value=1.5e-05  Score=72.70  Aligned_cols=125  Identities=22%  Similarity=0.305  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHhcCC-CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC
Q psy11646         17 DAAKLLSQYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ   95 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~   95 (433)
                      .+...|.++.++... +++.+|+|+|+.+|+|+ ..+++....+ ..|+|+|+.|--        ..+++.++++|++..
T Consensus        28 RAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWs-Qva~~~~~~~-~~ivavDi~p~~--------~~~~V~~iq~d~~~~   97 (205)
T COG0293          28 RAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWS-QVAAKKLGAG-GKIVAVDILPMK--------PIPGVIFLQGDITDE   97 (205)
T ss_pred             hHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHH-HHHHHHhCCC-CcEEEEECcccc--------cCCCceEEeeeccCc
Confidence            444555567777764 57899999999999999 6666555544 369999998742        236799999999876


Q ss_pred             cccc-----cccCcEeEEEEccc--------ccchhh---HHHHHHHHHHhccCCCEEEEEeccCCchhhHH
Q psy11646         96 NLES-----IFLAKFNKIFSFYC--------LHWVQD---QRQAISNIYNLLMPGGEVLLLLNAFNPIYDLY  151 (433)
Q Consensus        96 ~l~~-----~~~~~fD~Vis~~~--------l~~~~d---~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~  151 (433)
                      ...+     .....+|+|+|-.+        .+|...   ...++.-...+|+|||.+++-..-.....+.+
T Consensus        98 ~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l  169 (205)
T COG0293          98 DTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLL  169 (205)
T ss_pred             cHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHH
Confidence            5332     12244799997332        233321   34567778889999999998765444433333

>PLN02823 spermine synthase

Probab=98.24  E-value=8.6e-06  Score=80.65  Aligned_cols=104  Identities=20%  Similarity=0.278  Sum_probs=75.7

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC-------CCCeEEEEecccCCcccccccCc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT-------NPKLEFVVANIADQNLESIFLAK  104 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~-------~~~i~~~~~Di~~~~l~~~~~~~  104 (433)
                      +.+.+||.||+|.|..+..+++. .+.  .+++.+|+++.+++.|++.+.       .++++++..|.... +. ...++
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~-~~~--~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~-L~-~~~~~  176 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRH-KTV--EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE-LE-KRDEK  176 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhC-CCC--CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH-Hh-hCCCC
Confidence            35679999999999998656652 222  489999999999999999871       47899999998764 22 23478


Q ss_pred             EeEEEEcccccc--h-h-h--HHHHHH-HHHHhccCCCEEEEE
Q psy11646        105 FNKIFSFYCLHW--V-Q-D--QRQAIS-NIYNLLMPGGEVLLL  140 (433)
Q Consensus       105 fD~Vis~~~l~~--~-~-d--~~~~l~-~i~~~LkpGG~lll~  140 (433)
                      ||+|++-..=..  . . .  ...+++ .+.+.|+|||.+++.
T Consensus       177 yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        177 FDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             ccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            999998632100  0 0 0  235676 889999999987764

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.21  E-value=9e-06  Score=76.98  Aligned_cols=91  Identities=13%  Similarity=0.283  Sum_probs=74.5

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCccc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLE   98 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~   98 (433)
                      .+++.+++.....++..|||||+|.|.+|..++.    .+ .+|+++++++.+++..+++. ...+++++.+|+....++
T Consensus        17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~----~~-~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~   91 (259)
T COG0030          17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLE----RA-ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFP   91 (259)
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHh----hc-CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcch
Confidence            4577778888778899999999999999955554    22 58999999999999999998 468999999999887766


Q ss_pred             ccccCcEeEEEEcccccch
Q psy11646         99 SIFLAKFNKIFSFYCLHWV  117 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~  117 (433)
                      ...  .++.|+++-..+-.
T Consensus        92 ~l~--~~~~vVaNlPY~Is  108 (259)
T COG0030          92 SLA--QPYKVVANLPYNIS  108 (259)
T ss_pred             hhc--CCCEEEEcCCCccc
Confidence            311  68999999887654

>KOG3420|consensus

Probab=98.21  E-value=3.6e-06  Score=71.45  Aligned_cols=93  Identities=16%  Similarity=0.290  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccC
Q psy11646         17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIAD   94 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~   94 (433)
                      -+...+.-+-+.+.--.|.+++|+|||.|-++..  ......  ..++|+||.|++++.+++++  ..-++.+.++|+.+
T Consensus        32 iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a--~sm~~~--e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdild  107 (185)
T KOG3420|consen   32 IAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIA--FSMPKN--ESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILD  107 (185)
T ss_pred             HHHHHHHHHHhhhccccCcchhhhcCchhhhHHH--hhcCCC--ceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccc
Confidence            3445555555555545789999999999998722  222223  48999999999999999998  34567899999988


Q ss_pred             CcccccccCcEeEEEEcccccc
Q psy11646         95 QNLESIFLAKFNKIFSFYCLHW  116 (433)
Q Consensus        95 ~~l~~~~~~~fD~Vis~~~l~~  116 (433)
                      ..+..   +.||.++.+..+..
T Consensus       108 le~~~---g~fDtaviNppFGT  126 (185)
T KOG3420|consen  108 LELKG---GIFDTAVINPPFGT  126 (185)
T ss_pred             hhccC---CeEeeEEecCCCCc
Confidence            65443   89999999988753

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.21  E-value=1.1e-05  Score=72.97  Aligned_cols=106  Identities=20%  Similarity=0.367  Sum_probs=70.0

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCC-------CcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecc
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKS-------VVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANI   92 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~-------~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di   92 (433)
                      .++....++++..|||--||+|.+..+.+... ...       ..+++|.|+++.+++.|++++    ....+.+.+.|+
T Consensus        19 ~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~   97 (179)
T PF01170_consen   19 ALLNLAGWRPGDVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA   97 (179)
T ss_dssp             HHHHHTT--TTS-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred             HHHHHhCCCCCCEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence            44555567889999999999999986553322 111       014899999999999999998    234688999999


Q ss_pred             cCCcccccccCcEeEEEEcccccch-h---h----HHHHHHHHHHhccC
Q psy11646         93 ADQNLESIFLAKFNKIFSFYCLHWV-Q---D----QRQAISNIYNLLMP  133 (433)
Q Consensus        93 ~~~~l~~~~~~~fD~Vis~~~l~~~-~---d----~~~~l~~i~~~Lkp  133 (433)
                      ...++.+   +++|.|+++..+-.- .   +    ...+++++.+++++
T Consensus        98 ~~l~~~~---~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~  143 (179)
T PF01170_consen   98 RELPLPD---GSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP  143 (179)
T ss_dssp             GGGGGTT---SBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred             hhccccc---CCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence            8876333   799999999877532 1   1    23567888888888

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>KOG0820|consensus

Probab=98.20  E-value=7.7e-06  Score=76.63  Aligned_cols=87  Identities=24%  Similarity=0.415  Sum_probs=72.7

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-C---CCCeEEEEecccCC
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-T---NPKLEFVVANIADQ   95 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~---~~~i~~~~~Di~~~   95 (433)
                      .+++.++.....++++.|||||.|||.+|..++.    .+ .+|+++++++.|+....++. +   ....++.++|+...
T Consensus        45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe----~~-kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~  119 (315)
T KOG0820|consen   45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLE----AG-KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT  119 (315)
T ss_pred             HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHH----hc-CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC
Confidence            5677888888889999999999999999977775    23 69999999999999999998 2   35789999998876


Q ss_pred             cccccccCcEeEEEEcccccc
Q psy11646         96 NLESIFLAKFNKIFSFYCLHW  116 (433)
Q Consensus        96 ~l~~~~~~~fD~Vis~~~l~~  116 (433)
                      +++     .||.++++....-
T Consensus       120 d~P-----~fd~cVsNlPyqI  135 (315)
T KOG0820|consen  120 DLP-----RFDGCVSNLPYQI  135 (315)
T ss_pred             CCc-----ccceeeccCCccc
Confidence            554     6999999776543

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.20  E-value=9.5e-06  Score=81.58  Aligned_cols=117  Identities=15%  Similarity=0.157  Sum_probs=78.0

Q ss_pred             hcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEE
Q psy11646         13 MQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVV   89 (433)
Q Consensus        13 ~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~   89 (433)
                      .....++.+++.+.+.+... +.+|||++||+|.++. .+++.    ..+|+|+|+++.+++.|++++   +..++++..
T Consensus       187 ~N~~~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl-~la~~----~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~  260 (362)
T PRK05031        187 PNAAVNEKMLEWALDATKGS-KGDLLELYCGNGNFTL-ALARN----FRRVLATEISKPSVAAAQYNIAANGIDNVQIIR  260 (362)
T ss_pred             cCHHHHHHHHHHHHHHhhcC-CCeEEEEeccccHHHH-HHHhh----CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEE
Confidence            33445566666666655422 3579999999999995 55432    248999999999999999987   335799999


Q ss_pred             ecccCCcccccc--------------cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         90 ANIADQNLESIF--------------LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        90 ~Di~~~~l~~~~--------------~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +|+.+. ++...              ..+||+|+.-..-..+  ...+++.+.+   |++.++++.
T Consensus       261 ~d~~~~-l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~--~~~~l~~l~~---~~~ivyvSC  320 (362)
T PRK05031        261 MSAEEF-TQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGL--DDETLKLVQA---YERILYISC  320 (362)
T ss_pred             CCHHHH-HHHHhhcccccccccccccCCCCCEEEECCCCCCC--cHHHHHHHHc---cCCEEEEEe
Confidence            998663 22110              1258999997774221  2444455443   677766653

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.19  E-value=2.8e-06  Score=77.85  Aligned_cols=109  Identities=17%  Similarity=0.276  Sum_probs=82.5

Q ss_pred             hcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-----CCCCeEEEEecccCCccccccc
Q psy11646         28 QFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-----TNPKLEFVVANIADQNLESIFL  102 (433)
Q Consensus        28 ~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-----~~~~i~~~~~Di~~~~l~~~~~  102 (433)
                      ..+.+.|.+|||.+.|-|..++..++    .+..+|+.++.+|..++.|+-+-     ...+++++.+|+.+. ..++.+
T Consensus       129 ~V~~~~G~rVLDtC~GLGYtAi~a~~----rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~-V~~~~D  203 (287)
T COG2521         129 LVKVKRGERVLDTCTGLGYTAIEALE----RGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEV-VKDFDD  203 (287)
T ss_pred             eeccccCCEeeeeccCccHHHHHHHH----cCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHH-HhcCCc
Confidence            34445699999999999999877665    45359999999999999998775     224688999998764 455667


Q ss_pred             CcEeEEEEcccccch-hh--HHHHHHHHHHhccCCCEEEEEe
Q psy11646        103 AKFNKIFSFYCLHWV-QD--QRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~-~d--~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ++||.|+--..=... ..  -+.+.++++|+|||||.++--.
T Consensus       204 ~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv  245 (287)
T COG2521         204 ESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV  245 (287)
T ss_pred             cccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence            999999864332111 11  3678999999999999988654

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.18  E-value=9.1e-06  Score=82.02  Aligned_cols=98  Identities=16%  Similarity=0.115  Sum_probs=73.9

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      ++.+|||++||+|..+..++... +.  .+|+++|+++.+++.+++++   ...++++...|+... +..  .++||+|+
T Consensus        57 ~~~~vLDl~aGsG~~~l~~a~~~-~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~-l~~--~~~fD~V~  130 (382)
T PRK04338         57 PRESVLDALSASGIRGIRYALET-GV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL-LHE--ERKFDVVD  130 (382)
T ss_pred             CCCEEEECCCcccHHHHHHHHHC-CC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH-Hhh--cCCCCEEE
Confidence            35689999999999996665432 22  48999999999999999987   334567888888653 221  26799999


Q ss_pred             EcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        110 SFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       110 s~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +...    .....++....+.+++||.+.++
T Consensus       131 lDP~----Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        131 IDPF----GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             ECCC----CCcHHHHHHHHHHhcCCCEEEEE
Confidence            9653    33456777767888999999987

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.18  E-value=1.7e-05  Score=77.63  Aligned_cols=111  Identities=18%  Similarity=0.270  Sum_probs=83.4

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEe-cccCCcccc
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVA-NIADQNLES   99 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~-Di~~~~l~~   99 (433)
                      .+.+....++|..|||-=||||+++..+-.    - +.+++|+|++..|++-|+.++   ......+... |+...+++.
T Consensus       188 ~mVNLa~v~~G~~vlDPFcGTGgiLiEagl----~-G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~  262 (347)
T COG1041         188 AMVNLARVKRGELVLDPFCGTGGILIEAGL----M-GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRD  262 (347)
T ss_pred             HHHHHhccccCCEeecCcCCccHHHHhhhh----c-CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCC
Confidence            344444557899999999999999844322    2 269999999999999999998   2345555555 998887665


Q ss_pred             cccCcEeEEEEcccccch--------hh-HHHHHHHHHHhccCCCEEEEEec
Q psy11646        100 IFLAKFNKIFSFYCLHWV--------QD-QRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~--------~d-~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                         .++|.|++-...--.        .+ ..+++..+.++|++||++++..+
T Consensus       263 ---~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         263 ---NSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             ---CccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence               579999985544211        12 46789999999999999998765

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.16  E-value=1.6e-05  Score=76.60  Aligned_cols=102  Identities=19%  Similarity=0.278  Sum_probs=77.6

Q ss_pred             CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C----CCCeEEEEecccCCcccccccCcEe
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T----NPKLEFVVANIADQNLESIFLAKFN  106 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~----~~~i~~~~~Di~~~~l~~~~~~~fD  106 (433)
                      ..+||-||-|.|..++.+++ ..+-  .+++.+||.+..++.|++.+   .    +++++++..|.... +... .++||
T Consensus        77 pk~VLiiGgGdG~tlRevlk-h~~v--e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~-v~~~-~~~fD  151 (282)
T COG0421          77 PKRVLIIGGGDGGTLREVLK-HLPV--ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF-LRDC-EEKFD  151 (282)
T ss_pred             CCeEEEECCCccHHHHHHHh-cCCc--ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH-HHhC-CCcCC
Confidence            36999999999999966655 3332  48999999999999999988   2    47889999997654 3322 24899


Q ss_pred             EEEEcccccc--hh--hHHHHHHHHHHhccCCCEEEEE
Q psy11646        107 KIFSFYCLHW--VQ--DQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       107 ~Vis~~~l~~--~~--d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +|++-..=.-  .+  -...+++.+++.|+++|.++..
T Consensus       152 vIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         152 VIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             EEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            9998554321  01  1367899999999999998875

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.16  E-value=1.2e-05  Score=80.48  Aligned_cols=115  Identities=11%  Similarity=0.114  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEec
Q psy11646         15 QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVAN   91 (433)
Q Consensus        15 ~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~D   91 (433)
                      ...+..+++.+.+.+... +.+|||+|||+|.++. .+++.    ..+|+|+|+++.+++.|++++   +..+++++.+|
T Consensus       180 ~~~~~~l~~~v~~~~~~~-~~~vlDl~~G~G~~sl-~la~~----~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d  253 (353)
T TIGR02143       180 AAVNIKMLEWACEVTQGS-KGDLLELYCGNGNFSL-ALAQN----FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMS  253 (353)
T ss_pred             HHHHHHHHHHHHHHhhcC-CCcEEEEeccccHHHH-HHHHh----CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcC
Confidence            344556666666655422 3479999999999995 55532    248999999999999999988   33578999999


Q ss_pred             ccCCccccc-----c---------cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         92 IADQNLESI-----F---------LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        92 i~~~~l~~~-----~---------~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +.+. ++..     .         ...||+|+.-..-..  -...++..+.   +|++.+++..
T Consensus       254 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G--~~~~~l~~l~---~~~~ivYvsC  311 (353)
T TIGR02143       254 AEEF-TQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAG--LDPDTCKLVQ---AYERILYISC  311 (353)
T ss_pred             HHHH-HHHHhhccccccccccccccCCCCEEEECCCCCC--CcHHHHHHHH---cCCcEEEEEc
Confidence            8763 2210     0         123799998776221  1234444443   3777777653

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.14  E-value=1e-05  Score=84.74  Aligned_cols=105  Identities=13%  Similarity=0.258  Sum_probs=80.7

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      .+..+||||||.|.++ ..++...|..  .++|+|++...+..|.++.   +..|+.+...|+... ...+.++++|.|+
T Consensus       347 ~~p~~lEIG~G~G~~~-~~~A~~~p~~--~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~-~~~~~~~sv~~i~  422 (506)
T PRK01544        347 KRKVFLEIGFGMGEHF-INQAKMNPDA--LFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLI-LNDLPNNSLDGIY  422 (506)
T ss_pred             CCceEEEECCCchHHH-HHHHHhCCCC--CEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHhcCcccccEEE
Confidence            3567999999999999 5556666765  8999999999888877765   446788887776432 1113448899999


Q ss_pred             Ecccccchhh--------HHHHHHHHHHhccCCCEEEEEe
Q psy11646        110 SFYCLHWVQD--------QRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       110 s~~~l~~~~d--------~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .++.=-|...        ....+..+.++|+|||.+.+.+
T Consensus       423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T  462 (506)
T PRK01544        423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS  462 (506)
T ss_pred             EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence            9988766532        3578999999999999999875

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.09  E-value=1.3e-05  Score=73.76  Aligned_cols=116  Identities=21%  Similarity=0.348  Sum_probs=69.0

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc------------CCCCeEE
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH------------TNPKLEF   87 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~------------~~~~i~~   87 (433)
                      ..+..+++.++..++...+|||||.|.....+.. ..  +..+.+|+++.+...+.|+...            ...++++
T Consensus        29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal-~~--~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l  105 (205)
T PF08123_consen   29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAAL-QT--GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL  105 (205)
T ss_dssp             HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHH-HH----SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred             HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHH-Hc--CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence            4455667777788899999999999998743332 22  2247999999999888776432            1346778


Q ss_pred             EEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEE
Q psy11646         88 VVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL  139 (433)
Q Consensus        88 ~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll  139 (433)
                      ..+|+.+.......-...|+|++++.... ++....+.+....||+|.+++-
T Consensus       106 ~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~-~~l~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  106 IHGDFLDPDFVKDIWSDADVVFVNNTCFD-PDLNLALAELLLELKPGARIIS  156 (205)
T ss_dssp             ECS-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred             eccCccccHhHhhhhcCCCEEEEeccccC-HHHHHHHHHHHhcCCCCCEEEE
Confidence            88887654332222245799999987643 3455667788888998887654

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.09  E-value=1.9e-05  Score=74.85  Aligned_cols=119  Identities=24%  Similarity=0.356  Sum_probs=73.9

Q ss_pred             HHHHHHHHhcCC--CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CC--------------
Q psy11646         20 KLLSQYIDQFKW--TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TN--------------   82 (433)
Q Consensus        20 ~ll~~l~~~l~~--~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~--------------   82 (433)
                      ..+..+.+.+..  ..|.++||||||+--+- .+.+  . +.+.+++..|.++...+..++-. ..              
T Consensus        41 ~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~-~lsa--~-~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~  116 (256)
T PF01234_consen   41 FFLKNLHETFSSGGVKGETLLDIGSGPTIYQ-LLSA--C-EWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCE  116 (256)
T ss_dssp             HHHHHHHHHHHTSSS-EEEEEEES-TT--GG-GTTG--G-GTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHH
T ss_pred             HHHHHHHHHhCccCcCCCEEEEeCCCcHHHh-hhhH--H-HhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHh
Confidence            344444444432  24779999999996553 2211  1 22357999999998887655433 10              


Q ss_pred             ----------------CCe-EEEEecccCCccccc---ccCcEeEEEEcccccch----hhHHHHHHHHHHhccCCCEEE
Q psy11646         83 ----------------PKL-EFVVANIADQNLESI---FLAKFNKIFSFYCLHWV----QDQRQAISNIYNLLMPGGEVL  138 (433)
Q Consensus        83 ----------------~~i-~~~~~Di~~~~l~~~---~~~~fD~Vis~~~l~~~----~d~~~~l~~i~~~LkpGG~ll  138 (433)
                                      ..| .++..|+.+.+.-..   ...+||+|++..+++..    +....+++++.++|||||.|+
T Consensus       117 lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Li  196 (256)
T PF01234_consen  117 LEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLI  196 (256)
T ss_dssp             HTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             ccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEE
Confidence                            013 367788876532211   22469999999999866    345788999999999999999


Q ss_pred             EEec
Q psy11646        139 LLLN  142 (433)
Q Consensus       139 l~~~  142 (433)
                      +...
T Consensus       197 l~~~  200 (256)
T PF01234_consen  197 LAGV  200 (256)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9753

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.08  E-value=4.5e-05  Score=69.08  Aligned_cols=94  Identities=18%  Similarity=0.205  Sum_probs=71.6

Q ss_pred             EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEEEEcc
Q psy11646         36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKIFSFY  112 (433)
Q Consensus        36 ~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~  112 (433)
                      +++|||+|.|--+ ..++-..|..  +++.+|....-+...+.-.   +-.++++....+++. ..   ..+||+|++-.
T Consensus        51 ~~lDiGSGaGfPG-ipLaI~~p~~--~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~-~~---~~~fd~v~aRA  123 (184)
T PF02527_consen   51 KVLDIGSGAGFPG-IPLAIARPDL--QVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEP-EY---RESFDVVTARA  123 (184)
T ss_dssp             EEEEETSTTTTTH-HHHHHH-TTS--EEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHT-TT---TT-EEEEEEES
T ss_pred             eEEecCCCCCChh-HHHHHhCCCC--cEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccc-cc---CCCccEEEeeh
Confidence            8999999999888 4445455664  8999999998877766554   667899999999872 22   28899999977


Q ss_pred             cccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        113 CLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       113 ~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +-    .....+.-+..++++||.+++.
T Consensus       124 v~----~l~~l~~~~~~~l~~~G~~l~~  147 (184)
T PF02527_consen  124 VA----PLDKLLELARPLLKPGGRLLAY  147 (184)
T ss_dssp             SS----SHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hc----CHHHHHHHHHHhcCCCCEEEEE
Confidence            63    4567888899999999998875

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.07  E-value=3.9e-05  Score=76.87  Aligned_cols=119  Identities=22%  Similarity=0.281  Sum_probs=83.2

Q ss_pred             HhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccC
Q psy11646         27 DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLA  103 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~  103 (433)
                      ..+...+|.+|||+++++|.-|.. ++.+..+.+..|+++|+++.-++..+++.   +..++.....|....+-.....+
T Consensus       150 ~~L~p~pge~VlD~cAAPGGKTth-la~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~  228 (355)
T COG0144         150 LVLDPKPGERVLDLCAAPGGKTTH-LAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGE  228 (355)
T ss_pred             HHcCCCCcCEEEEECCCCCCHHHH-HHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccC
Confidence            345567899999999999999944 44454442356799999999999888887   55667777777654321111123


Q ss_pred             cEeEEEEc------cccc------ch----------hhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        104 KFNKIFSF------YCLH------WV----------QDQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       104 ~fD~Vis~------~~l~------~~----------~d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      +||.|+.-      ++++      |.          .-+...+....++|||||.|+.++.+..+
T Consensus       229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~  293 (355)
T COG0144         229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP  293 (355)
T ss_pred             cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence            69999972      2221      11          11456799999999999999998766554

>KOG1331|consensus

Probab=98.05  E-value=4.7e-06  Score=78.80  Aligned_cols=98  Identities=23%  Similarity=0.437  Sum_probs=78.8

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcc
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFY  112 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~  112 (433)
                      .+..++|+|||.|..+. . .   |.  ..++|.|++...+..|++.-   ......+|+...+..+   .+||.+++..
T Consensus        45 ~gsv~~d~gCGngky~~-~-~---p~--~~~ig~D~c~~l~~~ak~~~---~~~~~~ad~l~~p~~~---~s~d~~lsia  111 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLG-V-N---PL--CLIIGCDLCTGLLGGAKRSG---GDNVCRADALKLPFRE---ESFDAALSIA  111 (293)
T ss_pred             CcceeeecccCCcccCc-C-C---Cc--ceeeecchhhhhccccccCC---CceeehhhhhcCCCCC---Cccccchhhh
Confidence            47889999999998871 1 1   22  37899999999999888752   2257788988877776   8999999999


Q ss_pred             cccchh---hHHHHHHHHHHhccCCCEEEEEecc
Q psy11646        113 CLHWVQ---DQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       113 ~l~~~~---d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      ++||+.   ....+++++.+.|+|||..++...+
T Consensus       112 vihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa  145 (293)
T KOG1331|consen  112 VIHHLSTRERRERALEELLRVLRPGGNALVYVWA  145 (293)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence            999995   3568999999999999998876543

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.03  E-value=7.9e-05  Score=63.21  Aligned_cols=103  Identities=31%  Similarity=0.550  Sum_probs=70.8

Q ss_pred             EEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCC---eEEEEecccC--CcccccccCcEeEEEEc
Q psy11646         37 VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPK---LEFVVANIAD--QNLESIFLAKFNKIFSF  111 (433)
Q Consensus        37 VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~---i~~~~~Di~~--~~l~~~~~~~fD~Vis~  111 (433)
                      ++|+|||+|..+  .+....... ..++|+|+++.++..++.......   +.+...|...  .++..  ...||++.+.
T Consensus        52 ~ld~~~g~g~~~--~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~~  126 (257)
T COG0500          52 VLDIGCGTGRLA--LLARLGGRG-AYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFED--SASFDLVISL  126 (257)
T ss_pred             eEEecCCcCHHH--HHHHhCCCC-ceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCC--CCceeEEeee
Confidence            999999999864  222222222 478999999999998665541122   5777778765  33331  0379999444


Q ss_pred             ccccchhhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646        112 YCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus       112 ~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      ...++.. ....+.++.+.++|+|.+++......
T Consensus       127 ~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~  159 (257)
T COG0500         127 LVLHLLP-PAKALRELLRVLKPGGRLVLSDLLRD  159 (257)
T ss_pred             eehhcCC-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence            4445544 78899999999999999988765443

>PRK00536 speE spermidine synthase; Provisional

Probab=98.03  E-value=5.6e-05  Score=72.13  Aligned_cols=95  Identities=11%  Similarity=0.119  Sum_probs=73.3

Q ss_pred             CCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-------CCCCeEEEEecccCCccccccc
Q psy11646         30 KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-------TNPKLEFVVANIADQNLESIFL  102 (433)
Q Consensus        30 ~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-------~~~~i~~~~~Di~~~~l~~~~~  102 (433)
                      .++.+.+||=||.|.|..++++++.   +  .+|+.+||++.+++.+++.+       .+++++++.. +.     +...
T Consensus        69 ~h~~pk~VLIiGGGDGg~~REvLkh---~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~-----~~~~  137 (262)
T PRK00536         69 TKKELKEVLIVDGFDLELAHQLFKY---D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL-----DLDI  137 (262)
T ss_pred             hCCCCCeEEEEcCCchHHHHHHHCc---C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh-----hccC
Confidence            3466789999999999999888764   1  28999999999999999955       4577877652 11     1112


Q ss_pred             CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        103 AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      ++||+|++-..     ......+.+++.|+|||.++..
T Consensus       138 ~~fDVIIvDs~-----~~~~fy~~~~~~L~~~Gi~v~Q  170 (262)
T PRK00536        138 KKYDLIICLQE-----PDIHKIDGLKRMLKEDGVFISV  170 (262)
T ss_pred             CcCCEEEEcCC-----CChHHHHHHHHhcCCCcEEEEC
Confidence            68999998643     2366789999999999998864

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.02  E-value=3.6e-05  Score=73.13  Aligned_cols=106  Identities=18%  Similarity=0.282  Sum_probs=75.2

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-------CCCCeEEEEecccCCcccccccCc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-------TNPKLEFVVANIADQNLESIFLAK  104 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-------~~~~i~~~~~Di~~~~l~~~~~~~  104 (433)
                      +.+.+||=||.|.|..+..+++ ..+.  .+++.+|+++..++.|++.+       .+++++++..|.... +......+
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~-~~~~--~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~-l~~~~~~~  150 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLK-HPPV--ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKF-LKETQEEK  150 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTT-STT---SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHH-HHTSSST-
T ss_pred             CCcCceEEEcCCChhhhhhhhh-cCCc--ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHH-HHhccCCc
Confidence            4678999999999999955543 3222  48999999999999999976       147899999998653 22212128


Q ss_pred             EeEEEEcccccch--hh--HHHHHHHHHHhccCCCEEEEEe
Q psy11646        105 FNKIFSFYCLHWV--QD--QRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       105 fD~Vis~~~l~~~--~d--~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ||+|+.-..-...  ..  ....++.+++.|+|||.+++..
T Consensus       151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  151 YDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            9999984332111  11  3578999999999999998865

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.99  E-value=3.1e-05  Score=70.88  Aligned_cols=91  Identities=18%  Similarity=0.259  Sum_probs=70.8

Q ss_pred             CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcccc
Q psy11646         35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCL  114 (433)
Q Consensus        35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l  114 (433)
                      .++|||||=+.......      .+...|+.||+.+.            .-.+.+.|+.+.|++....++||+|.++.+|
T Consensus        53 lrlLEVGals~~N~~s~------~~~fdvt~IDLns~------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVL  114 (219)
T PF11968_consen   53 LRLLEVGALSTDNACST------SGWFDVTRIDLNSQ------------HPGILQQDFMERPLPKNESEKFDVISLSLVL  114 (219)
T ss_pred             ceEEeecccCCCCcccc------cCceeeEEeecCCC------------CCCceeeccccCCCCCCcccceeEEEEEEEE
Confidence            69999999765543111      12257999999873            2345788998888876667899999999999


Q ss_pred             cchhhH---HHHHHHHHHhccCCCE-----EEEEecc
Q psy11646        115 HWVQDQ---RQAISNIYNLLMPGGE-----VLLLLNA  143 (433)
Q Consensus       115 ~~~~d~---~~~l~~i~~~LkpGG~-----lll~~~~  143 (433)
                      .+++++   ...++.+.+.|+|+|.     ++++.+.
T Consensus       115 NfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~  151 (219)
T PF11968_consen  115 NFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL  151 (219)
T ss_pred             eeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence            999865   4679999999999999     8887653

>KOG2915|consensus

Probab=97.99  E-value=7.3e-05  Score=70.19  Aligned_cols=108  Identities=14%  Similarity=0.209  Sum_probs=83.6

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCccc
Q psy11646         23 SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLE   98 (433)
Q Consensus        23 ~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~   98 (433)
                      ..++..+..+||.+|+|-|+|+|.++..+++...|.|  +++-.|+-+...+.|++-+    ...++++.+-|+....+.
T Consensus        95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptG--hl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~  172 (314)
T KOG2915|consen   95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTG--HLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL  172 (314)
T ss_pred             HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCc--ceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence            3566777789999999999999999955555555655  9999999999988888877    357899999999876544


Q ss_pred             ccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEE
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVL  138 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~ll  138 (433)
                      . ....+|.|+.     .++.+..++..++++||.+|.-+
T Consensus       173 ~-ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~  206 (314)
T KOG2915|consen  173 I-KSLKADAVFL-----DLPAPWEAIPHAAKILKDEGGRL  206 (314)
T ss_pred             c-cccccceEEE-----cCCChhhhhhhhHHHhhhcCceE
Confidence            2 1367888876     44567778888899999877433

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=97.98  E-value=7.2e-05  Score=67.25  Aligned_cols=119  Identities=14%  Similarity=0.153  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHhcCC--CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEec
Q psy11646         18 AAKLLSQYIDQFKW--TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVAN   91 (433)
Q Consensus        18 ~~~ll~~l~~~l~~--~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~D   91 (433)
                      ..++-+.+...+..  -.|.++||+=+|+|.++.+.+.    ++..+++.+|.+..++...+++.    ...+.++...|
T Consensus        26 ~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlS----RGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~d  101 (187)
T COG0742          26 TDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALS----RGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRND  101 (187)
T ss_pred             chHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHh----CCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeec
Confidence            33444444555544  3689999999999999987776    45569999999999999999998    23678888888


Q ss_pred             ccCCccccc-ccCcEeEEEEcccccch-hhHHHHHHH--HHHhccCCCEEEEEe
Q psy11646         92 IADQNLESI-FLAKFNKIFSFYCLHWV-QDQRQAISN--IYNLLMPGGEVLLLL  141 (433)
Q Consensus        92 i~~~~l~~~-~~~~fD~Vis~~~l~~~-~d~~~~l~~--i~~~LkpGG~lll~~  141 (433)
                      .... +... ..+.||+|+.-..++.- -+....+..  -..+|+|+|.+++-.
T Consensus       102 a~~~-L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~  154 (187)
T COG0742         102 ALRA-LKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEH  154 (187)
T ss_pred             HHHH-HHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence            8732 2221 12359999998888721 222333333  568899999988754

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.98  E-value=0.00014  Score=71.55  Aligned_cols=116  Identities=14%  Similarity=0.147  Sum_probs=78.3

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCC-CCcEEEEEeCCHHHHHHHHhhcC---CCCeEE--EEecccCCc-
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPK-SVVKLVGLDVSPNMIKHAKNHHT---NPKLEF--VVANIADQN-   96 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~-~~~~v~gvDiS~~~l~~A~~~~~---~~~i~~--~~~Di~~~~-   96 (433)
                      +++..+  .++..++|+|||+|.-+..+|..+.+. ....|+++|+|..+++.+.+++.   .+.+++  +.+|..+.- 
T Consensus        69 ~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~  146 (319)
T TIGR03439        69 DIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLA  146 (319)
T ss_pred             HHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHh
Confidence            444443  456789999999999986665554322 12589999999999999998873   245555  677775531 


Q ss_pred             -ccc-cccCcEeEEEEcc-cccchh--hHHHHHHHHHH-hccCCCEEEEEe
Q psy11646         97 -LES-IFLAKFNKIFSFY-CLHWVQ--DQRQAISNIYN-LLMPGGEVLLLL  141 (433)
Q Consensus        97 -l~~-~~~~~fD~Vis~~-~l~~~~--d~~~~l~~i~~-~LkpGG~lll~~  141 (433)
                       ++. .......+++..+ ++..++  +....++++++ .|+|||.+++..
T Consensus       147 ~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~  197 (319)
T TIGR03439       147 WLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL  197 (319)
T ss_pred             hcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence             111 1113456666654 565554  34567899999 999999988864

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG3178|consensus

Probab=97.98  E-value=2.9e-05  Score=75.74  Aligned_cols=96  Identities=25%  Similarity=0.394  Sum_probs=79.6

Q ss_pred             CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcccc
Q psy11646         35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCL  114 (433)
Q Consensus        35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l  114 (433)
                      ...+|+|.|.|..+..++. ..|    ++-+++.....+..++..+. ++|+.+-+|.-+. .|.     -|+|++-+++
T Consensus       179 ~~avDvGgGiG~v~k~ll~-~fp----~ik~infdlp~v~~~a~~~~-~gV~~v~gdmfq~-~P~-----~daI~mkWiL  246 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLS-KYP----HIKGINFDLPFVLAAAPYLA-PGVEHVAGDMFQD-TPK-----GDAIWMKWIL  246 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHH-hCC----CCceeecCHHHHHhhhhhhc-CCcceeccccccc-CCC-----cCeEEEEeec
Confidence            6789999999999966665 544    67899998888888877765 6788888888766 443     4799999999


Q ss_pred             cchhh--HHHHHHHHHHhccCCCEEEEEec
Q psy11646        115 HWVQD--QRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       115 ~~~~d--~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ||+.|  ..+.|+++++.|+|||.+++.+.
T Consensus       247 hdwtDedcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  247 HDWTDEDCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence            99965  56889999999999999999875

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.94  E-value=7.1e-05  Score=75.28  Aligned_cols=129  Identities=12%  Similarity=0.094  Sum_probs=89.1

Q ss_pred             hhhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C
Q psy11646          5 TLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T   81 (433)
Q Consensus         5 ~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~   81 (433)
                      ..|+......|...--.+..+........+.+|||+.||+|..+.+++....  +..+|+++|+++.+++.++++.   .
T Consensus        16 vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~--ga~~Vv~nD~n~~Av~~i~~N~~~N~   93 (374)
T TIGR00308        16 VFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIE--GVREVFANDINPKAVESIKNNVEYNS   93 (374)
T ss_pred             cccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCC--CCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence            4555555555544444444444432222246899999999999977776421  2258999999999999999988   2


Q ss_pred             CCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         82 NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        82 ~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ..++++.+.|+... +.. ...+||+|..-. +.   .+...+..+.+.+++||.+.++.
T Consensus        94 ~~~~~v~~~Da~~~-l~~-~~~~fDvIdlDP-fG---s~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308        94 VENIEVPNEDAANV-LRY-RNRKFHVIDIDP-FG---TPAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             CCcEEEEchhHHHH-HHH-hCCCCCEEEeCC-CC---CcHHHHHHHHHhcccCCEEEEEe
Confidence            34578888887654 221 125799998855 32   34567888889999999999873

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.93  E-value=0.00013  Score=67.13  Aligned_cols=108  Identities=17%  Similarity=0.298  Sum_probs=72.2

Q ss_pred             HhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCH----HHHHHHHhhcCCCCeEEEEecccCCccccccc
Q psy11646         27 DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSP----NMIKHAKNHHTNPKLEFVVANIADQNLESIFL  102 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~----~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~  102 (433)
                      +.+..++|.+||-+|+++|... ..++...... ..|++++.|+    +.+..|++|   +|+--+..|+.....-...-
T Consensus        67 ~~~~ik~gskVLYLGAasGTTV-SHvSDIvg~~-G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv  141 (229)
T PF01269_consen   67 ENIPIKPGSKVLYLGAASGTTV-SHVSDIVGPD-GVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLV  141 (229)
T ss_dssp             S--S--TT-EEEEETTTTSHHH-HHHHHHHTTT-SEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS
T ss_pred             cccCCCCCCEEEEecccCCCcc-chhhhccCCC-CcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhccc
Confidence            4455679999999999999887 4444444422 3999999999    556667776   68888888987532111233


Q ss_pred             CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        103 AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +..|+|++--+  ...+.+-++.|....||+||.++++.
T Consensus       142 ~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~i  178 (229)
T PF01269_consen  142 EMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIISI  178 (229)
T ss_dssp             --EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence            68999988544  22345667899999999999999875

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.92  E-value=0.00017  Score=69.31  Aligned_cols=103  Identities=17%  Similarity=0.411  Sum_probs=76.5

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcc
Q psy11646         19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNL   97 (433)
Q Consensus        19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l   97 (433)
                      ..+++.+++.+...++..|||||+|+|.+|..++. ..    .+++++|+++.+++..++++ ..++++++.+|+.....
T Consensus        16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~-~~----~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~   90 (262)
T PF00398_consen   16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLK-RG----KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDL   90 (262)
T ss_dssp             HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHH-HS----SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCG
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhc-cc----CcceeecCcHhHHHHHHHHhhhcccceeeecchhcccc
Confidence            35566667777767899999999999999955554 22    49999999999999999988 46899999999988765


Q ss_pred             cccccCcEeEEEEcccccchhhHHHHHHHHHH
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYN  129 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~  129 (433)
                      ..........|+++...+..   ...+.++..
T Consensus        91 ~~~~~~~~~~vv~NlPy~is---~~il~~ll~  119 (262)
T PF00398_consen   91 YDLLKNQPLLVVGNLPYNIS---SPILRKLLE  119 (262)
T ss_dssp             GGHCSSSEEEEEEEETGTGH---HHHHHHHHH
T ss_pred             HHhhcCCceEEEEEecccch---HHHHHHHhh
Confidence            54334567788888776332   234444444

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.92  E-value=1.4e-05  Score=77.48  Aligned_cols=115  Identities=23%  Similarity=0.366  Sum_probs=80.6

Q ss_pred             cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcE
Q psy11646         29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKF  105 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~f  105 (433)
                      +...++.+|||+++|+|.-+..+ +...... ..+++.|+++.-+...+++.   +..++.....|..... +......|
T Consensus        81 L~~~~~~~VLD~CAapGgKt~~l-a~~~~~~-g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~-~~~~~~~f  157 (283)
T PF01189_consen   81 LDPQPGERVLDMCAAPGGKTTHL-AELMGNK-GEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLD-PKKPESKF  157 (283)
T ss_dssp             HTTTTTSEEEESSCTTSHHHHHH-HHHTTTT-SEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHH-HHHHTTTE
T ss_pred             ccccccccccccccCCCCceeee-eecccch-hHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccc-cccccccc
Confidence            34578999999999999998544 4444422 49999999999999988876   5567777777766531 11222469


Q ss_pred             eEEEEcc------ccc------ch----------hhHHHHHHHHHHhc----cCCCEEEEEeccCCc
Q psy11646        106 NKIFSFY------CLH------WV----------QDQRQAISNIYNLL----MPGGEVLLLLNAFNP  146 (433)
Q Consensus       106 D~Vis~~------~l~------~~----------~d~~~~l~~i~~~L----kpGG~lll~~~~~~p  146 (433)
                      |.|+.-.      ++.      |.          .-+.+.+++..+.+    ||||+++.++.+..+
T Consensus       158 d~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~  224 (283)
T PF01189_consen  158 DRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP  224 (283)
T ss_dssp             EEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG
T ss_pred             chhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH
Confidence            9999722      111      11          11456799999999    999999998765443

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.92  E-value=4.1e-05  Score=75.31  Aligned_cols=121  Identities=19%  Similarity=0.333  Sum_probs=75.2

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhccc------CCCCCcEEEEEeCCHHHHHHHHhhc---C--CCCeEE
Q psy11646         19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPN------LPKSVVKLVGLDVSPNMIKHAKNHH---T--NPKLEF   87 (433)
Q Consensus        19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~------~~~~~~~v~gvDiS~~~l~~A~~~~---~--~~~i~~   87 (433)
                      ..+...+.+.+...++.+|+|-+||+|.+...+....      ...  .+++|+|+++.++..|+-++   +  .....+
T Consensus        32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~--~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i  109 (311)
T PF02384_consen   32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKE--INIYGIEIDPEAVALAKLNLLLHGIDNSNINI  109 (311)
T ss_dssp             HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCC--EEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred             HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhccccccccc--ceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence            3444445555555678899999999999985555421      122  48999999999999988765   1  233457


Q ss_pred             EEecccCCcccccccCcEeEEEEcccccch--h-------------------hHHHHHHHHHHhccCCCEEEEEec
Q psy11646         88 VVANIADQNLESIFLAKFNKIFSFYCLHWV--Q-------------------DQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        88 ~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~--~-------------------d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ...|.-..+.. .....||+|+++.++-..  .                   .....+..+.+.|++||++.+..+
T Consensus       110 ~~~d~l~~~~~-~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp  184 (311)
T PF02384_consen  110 IQGDSLENDKF-IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP  184 (311)
T ss_dssp             EES-TTTSHSC-TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccccccccccc-ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence            77775432211 113689999998766422  0                   012467889999999999887764

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.91  E-value=0.00021  Score=73.12  Aligned_cols=123  Identities=20%  Similarity=0.212  Sum_probs=88.0

Q ss_pred             hhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEE
Q psy11646         11 NSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEF   87 (433)
Q Consensus        11 ~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~   87 (433)
                      .+.....+..++....+.+...++.++||+=||.|.++ ..+++    ...+|+|+|+++++++.|++++   +..|++|
T Consensus       271 ~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~-l~lA~----~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f  345 (432)
T COG2265         271 FQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFG-LPLAK----RVKKVHGVEISPEAVEAAQENAAANGIDNVEF  345 (432)
T ss_pred             eecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhh-hhhcc----cCCEEEEEecCHHHHHHHHHHHHHcCCCcEEE
Confidence            34455567788888888887778899999999999999 45552    2359999999999999999998   4567999


Q ss_pred             EEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         88 VVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        88 ~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ..++.+...........+|.|+.-..=-.+.  +.+++.+. .++|...++++.
T Consensus       346 ~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~--~~~lk~l~-~~~p~~IvYVSC  396 (432)
T COG2265         346 IAGDAEEFTPAWWEGYKPDVVVVDPPRAGAD--REVLKQLA-KLKPKRIVYVSC  396 (432)
T ss_pred             EeCCHHHHhhhccccCCCCEEEECCCCCCCC--HHHHHHHH-hcCCCcEEEEeC
Confidence            9999887532222235789999866533332  23444444 455666666653

>KOG1709|consensus

Probab=97.84  E-value=0.00017  Score=65.52  Aligned_cols=121  Identities=17%  Similarity=0.261  Sum_probs=88.4

Q ss_pred             hcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEe
Q psy11646         13 MQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVA   90 (433)
Q Consensus        13 ~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~   90 (433)
                      ++-+.-..+....++.+. .+|.|||.||-|-|-.. .+++..-|.   +=+.++..|+.++..+...  ...++-...+
T Consensus        82 VMm~WEtpiMha~A~ai~-tkggrvLnVGFGMgIid-T~iQe~~p~---~H~IiE~hp~V~krmr~~gw~ek~nViil~g  156 (271)
T KOG1709|consen   82 VMMRWETPIMHALAEAIS-TKGGRVLNVGFGMGIID-TFIQEAPPD---EHWIIEAHPDVLKRMRDWGWREKENVIILEG  156 (271)
T ss_pred             hhhhhhhHHHHHHHHHHh-hCCceEEEeccchHHHH-HHHhhcCCc---ceEEEecCHHHHHHHHhcccccccceEEEec
Confidence            333444455555555554 56899999999999987 566655442   5577899999999999877  3456766666


Q ss_pred             cccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEE
Q psy11646         91 NIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL  139 (433)
Q Consensus        91 Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll  139 (433)
                      -.++. ++...++.||-|+---.-.+-+|.....+.+.++|||+|++-.
T Consensus       157 ~WeDv-l~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Sy  204 (271)
T KOG1709|consen  157 RWEDV-LNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSY  204 (271)
T ss_pred             chHhh-hccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEE
Confidence            55543 4445568899998765556778888899999999999998654

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.84  E-value=0.0011  Score=72.31  Aligned_cols=121  Identities=18%  Similarity=0.205  Sum_probs=81.7

Q ss_pred             HHHHHHHHhcCC-CCCCEEEEECCCCChhHHHHhccc--CCC-------------------------------------C
Q psy11646         20 KLLSQYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPN--LPK-------------------------------------S   59 (433)
Q Consensus        20 ~ll~~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~--~~~-------------------------------------~   59 (433)
                      .+...++....+ +++..++|.+||+|++.++.+...  .+.                                     .
T Consensus       176 tlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~  255 (702)
T PRK11783        176 NLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL  255 (702)
T ss_pred             HHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence            444455556666 568899999999999986664311  010                                     0


Q ss_pred             CcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCcccccccCcEeEEEEcccccch----hhHHHHHHHHHHhc
Q psy11646         60 VVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWV----QDQRQAISNIYNLL  131 (433)
Q Consensus        60 ~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~----~d~~~~l~~i~~~L  131 (433)
                      ..+++|+|+++.+++.|++++   + ...+++.++|+.+.+.+. ..++||+|+++..+..-    .+.....+.+.+.+
T Consensus       256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~l  334 (702)
T PRK11783        256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-PKGPTGLVISNPPYGERLGEEPALIALYSQLGRRL  334 (702)
T ss_pred             CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-ccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHH
Confidence            126999999999999999998   2 245889999998754332 22579999999886422    23344444444554


Q ss_pred             c---CCCEEEEEe
Q psy11646        132 M---PGGEVLLLL  141 (433)
Q Consensus       132 k---pGG~lll~~  141 (433)
                      +   +|+.+++..
T Consensus       335 k~~~~g~~~~llt  347 (702)
T PRK11783        335 KQQFGGWNAALFS  347 (702)
T ss_pred             HHhCCCCeEEEEe
Confidence            4   888887654

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.83  E-value=5.6e-05  Score=69.33  Aligned_cols=96  Identities=17%  Similarity=0.254  Sum_probs=65.4

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      +++.+|+|+.||-|.++..++. ... + ..|+++|++|.+++.++++.    ...++....+|......    .+.||.
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak-~~~-~-~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~----~~~~dr  172 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAK-HGK-A-KRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP----EGKFDR  172 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHH-HT--S-SEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-------TT-EEE
T ss_pred             CcceEEEEccCCccHHHHHHhh-hcC-c-cEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC----ccccCE
Confidence            6799999999999999965543 222 2 48999999999999999988    33568899999877532    389999


Q ss_pred             EEEcccccchhhHHHHHHHHHHhccCCCEEE
Q psy11646        108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVL  138 (433)
Q Consensus       108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~ll  138 (433)
                      |+++..-...    ..+..+.+++++||.+.
T Consensus       173 vim~lp~~~~----~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  173 VIMNLPESSL----EFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             EEE--TSSGG----GGHHHHHHHEEEEEEEE
T ss_pred             EEECChHHHH----HHHHHHHHHhcCCcEEE
Confidence            9998764332    35666788899998763

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>KOG3987|consensus

Probab=97.78  E-value=6.3e-06  Score=74.07  Aligned_cols=94  Identities=22%  Similarity=0.325  Sum_probs=71.9

Q ss_pred             CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEccc
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYC  113 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~  113 (433)
                      +.++||+|+|.|..+ ..+++    .+.+|++++.|..|....+++-    ..  +..+.+..-.   +-+||+|.|.+.
T Consensus       113 ~~~lLDlGAGdGeit-~~m~p----~feevyATElS~tMr~rL~kk~----yn--Vl~~~ew~~t---~~k~dli~clNl  178 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEIT-LRMAP----TFEEVYATELSWTMRDRLKKKN----YN--VLTEIEWLQT---DVKLDLILCLNL  178 (288)
T ss_pred             CeeEEeccCCCcchh-hhhcc----hHHHHHHHHhhHHHHHHHhhcC----Cc--eeeehhhhhc---CceeehHHHHHH
Confidence            568999999999999 55553    3357999999999999888752    22  2222221111   156999999999


Q ss_pred             ccchhhHHHHHHHHHHhccC-CCEEEEEe
Q psy11646        114 LHWVQDQRQAISNIYNLLMP-GGEVLLLL  141 (433)
Q Consensus       114 l~~~~d~~~~l~~i~~~Lkp-GG~lll~~  141 (433)
                      +....++-..++.++.+|+| +|+++++.
T Consensus       179 LDRc~~p~kLL~Di~~vl~psngrvivaL  207 (288)
T KOG3987|consen  179 LDRCFDPFKLLEDIHLVLAPSNGRVIVAL  207 (288)
T ss_pred             HHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence            99888999999999999999 89888764

>KOG1663|consensus

Probab=97.73  E-value=0.00045  Score=63.61  Aligned_cols=115  Identities=16%  Similarity=0.240  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecc
Q psy11646         17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANI   92 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di   92 (433)
                      ....++..+++.+   .+.++||||.=+|..+ ...+..+|.+ .+|+++|+++...+.+.+..    ....|++++++.
T Consensus        60 d~g~fl~~li~~~---~ak~~lelGvfTGySa-L~~Alalp~d-Grv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a  134 (237)
T KOG1663|consen   60 DKGQFLQMLIRLL---NAKRTLELGVFTGYSA-LAVALALPED-GRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA  134 (237)
T ss_pred             HHHHHHHHHHHHh---CCceEEEEecccCHHH-HHHHHhcCCC-ceEEEEecChHHHHHhHHHHHhccccceeeeeecch
Confidence            3445555555554   4679999999999887 4455566665 69999999999999987665    346788998887


Q ss_pred             cCCcccc----cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646         93 ADQNLES----IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        93 ~~~~l~~----~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      .+. +.+    ...++||.+|.-.   |=.+....+.++.+++|+||.+++-
T Consensus       135 ~es-Ld~l~~~~~~~tfDfaFvDa---dK~nY~~y~e~~l~Llr~GGvi~~D  182 (237)
T KOG1663|consen  135 LES-LDELLADGESGTFDFAFVDA---DKDNYSNYYERLLRLLRVGGVIVVD  182 (237)
T ss_pred             hhh-HHHHHhcCCCCceeEEEEcc---chHHHHHHHHHHHhhcccccEEEEe
Confidence            543 222    3348899998621   2223346788899999999998764

>KOG1269|consensus

Probab=97.72  E-value=6.4e-05  Score=75.05  Aligned_cols=102  Identities=26%  Similarity=0.395  Sum_probs=83.0

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      .++..++|+|||-|... ..++.. ..  ..++|+|.++..+..+....    ....-.++..|+...++++   ..||.
T Consensus       109 ~~~~~~~~~~~g~~~~~-~~i~~f-~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fed---n~fd~  181 (364)
T KOG1269|consen  109 FPGSKVLDVGTGVGGPS-RYIAVF-KK--AGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFED---NTFDG  181 (364)
T ss_pred             cccccccccCcCcCchh-HHHHHh-cc--CCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCc---cccCc
Confidence            57778999999999998 555433 22  47999999999888877665    2234445778888777666   99999


Q ss_pred             EEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +-+..+..|.++...++.+++++++|||..+.-
T Consensus       182 v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  182 VRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK  214 (364)
T ss_pred             EEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence            999999999999999999999999999998764

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.72  E-value=0.0015  Score=62.42  Aligned_cols=161  Identities=15%  Similarity=0.210  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHhcCC----CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC------------
Q psy11646         18 AAKLLSQYIDQFKW----TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT------------   81 (433)
Q Consensus        18 ~~~ll~~l~~~l~~----~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~------------   81 (433)
                      ...+++++.+.++.    ....+||--|||.|.++..++.    .+ ..+.|.|.|--|+-..+-.+.            
T Consensus        37 ~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~----~G-~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~P  111 (270)
T PF07942_consen   37 YSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAK----LG-YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYP  111 (270)
T ss_pred             HHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhh----cc-ceEEEEEchHHHHHHHHHHHcccCCCCcEEEec
Confidence            34455555555442    2457899999999999966654    24 699999999999755432110            


Q ss_pred             -------------------------------CCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHh
Q psy11646         82 -------------------------------NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNL  130 (433)
Q Consensus        82 -------------------------------~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~  130 (433)
                                                     ..++....+|+.+.-.++...++||.|+..+.+...++.-..++.|.++
T Consensus       112 f~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~l  191 (270)
T PF07942_consen  112 FVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHL  191 (270)
T ss_pred             ceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHH
Confidence                                           0123344444443321111237899999999999889999999999999


Q ss_pred             ccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeeccccCceEEEccccccchHHHHHHhcCCCCCeEEEecCC
Q psy11646        131 LMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGA  210 (433)
Q Consensus       131 LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~pl~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~a  210 (433)
                      |||||..+-    ..|+.         -.|....               ...+..-+.+.+++.......+++++.....
T Consensus       192 LkpgG~WIN----~GPLl---------yh~~~~~---------------~~~~~sveLs~eEi~~l~~~~GF~~~~~~~~  243 (270)
T PF07942_consen  192 LKPGGYWIN----FGPLL---------YHFEPMS---------------IPNEMSVELSLEEIKELIEKLGFEIEKEESS  243 (270)
T ss_pred             hccCCEEEe----cCCcc---------ccCCCCC---------------CCCCcccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence            999996553    23321         1111110               0011122346778888877788888766553


Q ss_pred             C
Q psy11646        211 P  211 (433)
Q Consensus       211 p  211 (433)
                      .
T Consensus       244 i  244 (270)
T PF07942_consen  244 I  244 (270)
T ss_pred             e
Confidence            3

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.71  E-value=0.00028  Score=74.66  Aligned_cols=83  Identities=18%  Similarity=0.232  Sum_probs=54.5

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCC-----CCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcc--ccccc
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPK-----SVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNL--ESIFL  102 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~-----~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l--~~~~~  102 (433)
                      .+.+|||.|||+|.++..++......     ....++|+|+++.++..|+.++   ....+.+...|......  .....
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~  110 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL  110 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence            35689999999999986665433210     1147899999999999999886   21234445454332211  11122


Q ss_pred             CcEeEEEEccccc
Q psy11646        103 AKFNKIFSFYCLH  115 (433)
Q Consensus       103 ~~fD~Vis~~~l~  115 (433)
                      +.||+|+++..+-
T Consensus       111 ~~fD~IIgNPPy~  123 (524)
T TIGR02987       111 DLFDIVITNPPYG  123 (524)
T ss_pred             CcccEEEeCCCcc
Confidence            6899999998765

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.70  E-value=0.00052  Score=65.84  Aligned_cols=103  Identities=17%  Similarity=0.358  Sum_probs=65.7

Q ss_pred             CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC-----CCCeEEEEecccCCcccccccCcEeEE
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT-----NPKLEFVVANIADQNLESIFLAKFNKI  108 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~-----~~~i~~~~~Di~~~~l~~~~~~~fD~V  108 (433)
                      +.+|+=||||+=-+|...+++....+ ..++++|+++.+++.|++...     ..++.|..+|+.+....   ...||+|
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~-~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d---l~~~DvV  196 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPG-ARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD---LKEYDVV  196 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT---EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-------SEE
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc---cccCCEE
Confidence            45999999999998866666443222 489999999999999988652     57899999998764322   2679999


Q ss_pred             EEcccccc-hhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        109 FSFYCLHW-VQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       109 is~~~l~~-~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +....... -++..+++.++.+.++||..+++-
T Consensus       197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             EE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             EEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence            88766542 246788999999999999988774

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=97.66  E-value=0.00029  Score=70.53  Aligned_cols=99  Identities=18%  Similarity=0.277  Sum_probs=63.3

Q ss_pred             hhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeE
Q psy11646         10 NNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLE   86 (433)
Q Consensus        10 ~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~   86 (433)
                      +.+.....+..+++.+++.+...++ +|||+-||.|.++. .++.    .+.+|+|+|+++.+++.|++++   +..+++
T Consensus       174 FfQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl-~la~----~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~  247 (352)
T PF05958_consen  174 FFQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSL-PLAK----KAKKVIGVEIVEEAVEDARENAKLNGIDNVE  247 (352)
T ss_dssp             ---SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHH-HHHC----CSSEEEEEES-HHHHHHHHHHHHHTT--SEE
T ss_pred             CccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHH-HHHh----hCCeEEEeeCCHHHHHHHHHHHHHcCCCcce
Confidence            3444555677888888888876655 89999999999994 4553    2359999999999999999998   457899


Q ss_pred             EEEecccCCcc-----------cc--cccCcEeEEEEcccc
Q psy11646         87 FVVANIADQNL-----------ES--IFLAKFNKIFSFYCL  114 (433)
Q Consensus        87 ~~~~Di~~~~l-----------~~--~~~~~fD~Vis~~~l  114 (433)
                      |..+++++...           ..  .....+|+|+.-.+=
T Consensus       248 f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR  288 (352)
T PF05958_consen  248 FIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPR  288 (352)
T ss_dssp             EEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---T
T ss_pred             EEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCC
Confidence            99887654210           00  112368999885543

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF14314 Methyltrans_Mon: Virus-capping methyltransferase

Probab=97.65  E-value=0.00085  Score=71.28  Aligned_cols=106  Identities=20%  Similarity=0.227  Sum_probs=82.0

Q ss_pred             cccccchHHHHHHhcC--CCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCC---HHH
Q psy11646        183 DITKESTIKEIFSHFD--DEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRN---VVC  257 (433)
Q Consensus       183 Di~~~~t~~~il~~~~--~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~---~~~  257 (433)
                      |.++..|++-....-.  ...+|++++||-       ..|......+-..-.+.+..+|.++|+++.|.|-..-   ...
T Consensus       395 DLs~~~TW~YF~~l~~~~~~~idLiv~DmE-------V~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~~~~~  467 (675)
T PF14314_consen  395 DLSDPETWKYFVSLKKQHNLSIDLIVMDME-------VRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLSPDYN  467 (675)
T ss_pred             ccCCccHHHHHHHHHhhcCCcccEEEEece-------ecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhhcchhh
Confidence            5556666665554443  347899999996       3445555555555567777889999999999998733   337


Q ss_pred             HHHHHhcccceeEEecCCCCcccccceeEEEeeccCCC
Q psy11646        258 LETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK  295 (433)
Q Consensus       258 ~~~~l~~~F~~v~~~KP~~sr~~s~E~~~v~~~~~~~~  295 (433)
                      ....+..+|+.|.+..+.-|=+.++|+|+||++++...
T Consensus       468 il~~lg~~F~~V~l~qT~~SSs~TSEVYlv~~~~~~~~  505 (675)
T PF14314_consen  468 ILDLLGRYFKSVELVQTQFSSSFTSEVYLVFQKLKKFP  505 (675)
T ss_pred             HHHHHHhhcCceEEEECCCCCCCceEEEEEEecccCCC
Confidence            88889999999999999999999999999999998654

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.63  E-value=0.00041  Score=65.93  Aligned_cols=124  Identities=19%  Similarity=0.327  Sum_probs=74.6

Q ss_pred             HHHHHHHHhcCCC-CCCEEEEECCCCC--hhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCC--eEEEEeccc
Q psy11646         20 KLLSQYIDQFKWT-DNESVLDVGCGPG--NVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPK--LEFVVANIA   93 (433)
Q Consensus        20 ~ll~~l~~~l~~~-~~~~VLDIGcG~G--~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~--i~~~~~Di~   93 (433)
                      ..+.+..+.+... .-...||||||--  ..+..++....|..  +|+-+|..|-.+..++..+ ..++  ..++++|+.
T Consensus        54 ~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~a--RVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r  131 (267)
T PF04672_consen   54 AFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDA--RVVYVDNDPVVLAHARALLADNPRGRTAYVQADLR  131 (267)
T ss_dssp             HHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT---EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT
T ss_pred             HHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCc--eEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCC
Confidence            3444444444333 2346999999943  34446666666654  9999999999999999987 4455  889999997


Q ss_pred             CCc--ccc-cccCcEe-----EEEEcccccchh---hHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646         94 DQN--LES-IFLAKFN-----KIFSFYCLHWVQ---DQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus        94 ~~~--l~~-~~~~~fD-----~Vis~~~l~~~~---d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      +..  +.. ...+-+|     .|++..++||++   ++..+++.+.+.|.||.+|+++..+..
T Consensus       132 ~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d  194 (267)
T PF04672_consen  132 DPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD  194 (267)
T ss_dssp             -HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred             CHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence            632  110 0112233     688888999995   478899999999999999999866543

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG3201|consensus

Probab=97.62  E-value=6.8e-05  Score=65.03  Aligned_cols=127  Identities=15%  Similarity=0.159  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHhcCC-CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC------CCCeEEEE
Q psy11646         17 DAAKLLSQYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT------NPKLEFVV   89 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~------~~~i~~~~   89 (433)
                      +.++.|..++-+-.. -.|.+|||+|.|--+++-.+++...+.  ..|..+|-++..++..++...      ..++....
T Consensus        12 pseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~--~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlr   89 (201)
T KOG3201|consen   12 PSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPD--SSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLR   89 (201)
T ss_pred             ccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCC--ceEEEecCCHHHHHHHHHHHhcccccccceehhhH
Confidence            344455544433222 257899999999777664556555554  489999999999988877651      12233333


Q ss_pred             ecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646         90 ANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus        90 ~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      .++..... +.....||.|++..++..-+-.+..++.|+.+|+|.|.-++..+-...
T Consensus        90 w~~~~aqs-q~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~  145 (201)
T KOG3201|consen   90 WLIWGAQS-QQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ  145 (201)
T ss_pred             HHHhhhHH-HHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccc
Confidence            34433221 123368999999999988777888999999999999997776655443

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.61  E-value=0.00022  Score=69.20  Aligned_cols=137  Identities=19%  Similarity=0.232  Sum_probs=84.3

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEe
Q psy11646         14 QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVA   90 (433)
Q Consensus        14 ~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~   90 (433)
                      +.......|.++.....--.+.+|||+|.|+|... ..+...+|.- ..++.++.|+..-+......   ......+...
T Consensus        94 ~Yasv~asL~~L~~~~~dfapqsiLDvG~GPgtgl-~A~n~i~Pdl-~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s  171 (484)
T COG5459          94 TYASVRASLDELQKRVPDFAPQSILDVGAGPGTGL-WALNDIWPDL-KSAVILEASPALRKVGDTLAENVSTEKTDWRAS  171 (484)
T ss_pred             HHHHHHHHHHHHHHhCCCcCcchhhccCCCCchhh-hhhcccCCCc-hhhhhhccCHHHHHHHHHHHhhcccccCCCCCC
Confidence            33345556666665554446778999999999887 6666667664 46778888886654433322   1222334444


Q ss_pred             cccCCcccccccCcEeEEEEcccccchhh---HHHHHHHHHHhccCCCEEEEEeccCCchhhHHH
Q psy11646         91 NIADQNLESIFLAKFNKIFSFYCLHWVQD---QRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYE  152 (433)
Q Consensus        91 Di~~~~l~~~~~~~fD~Vis~~~l~~~~d---~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~  152 (433)
                      |+....++-.....|++|+...-|-+..+   ....++.++.+++|||.+++.+.+..-.++.+.
T Consensus       172 ~vt~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~  236 (484)
T COG5459         172 DVTEDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERIL  236 (484)
T ss_pred             ccchhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHH
Confidence            44332222112255676666655544433   234789999999999999999877654444443

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.60  E-value=0.00047  Score=63.70  Aligned_cols=95  Identities=22%  Similarity=0.237  Sum_probs=71.1

Q ss_pred             CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCc-EeEEE
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAK-FNKIF  109 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~-fD~Vi  109 (433)
                      +.+++|||+|.|--+ ..++-..|..  +++-+|....-+.+.++..   +.++++++++.+++..-.    .. ||+|+
T Consensus        68 ~~~~~DIGSGaGfPG-ipLAI~~p~~--~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~----~~~~D~vt  140 (215)
T COG0357          68 AKRVLDIGSGAGFPG-IPLAIAFPDL--KVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE----KKQYDVVT  140 (215)
T ss_pred             CCEEEEeCCCCCCch-hhHHHhccCC--cEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc----cccCcEEE
Confidence            589999999999888 3444445555  7999999887776666554   667899999999885322    23 99999


Q ss_pred             EcccccchhhHHHHHHHHHHhccCCCEEEE
Q psy11646        110 SFYCLHWVQDQRQAISNIYNLLMPGGEVLL  139 (433)
Q Consensus       110 s~~~l~~~~d~~~~l~~i~~~LkpGG~lll  139 (433)
                      +-.+    .+......-+..++++||.++.
T Consensus       141 sRAv----a~L~~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         141 SRAV----ASLNVLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             eehc----cchHHHHHHHHHhcccCCcchh
Confidence            9765    3455667778899999988654

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.57  E-value=0.0007  Score=67.34  Aligned_cols=119  Identities=18%  Similarity=0.247  Sum_probs=81.5

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhccc--CCCCCc----------------------------------E
Q psy11646         19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPN--LPKSVV----------------------------------K   62 (433)
Q Consensus        19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~--~~~~~~----------------------------------~   62 (433)
                      +.+...++....|+++..++|-=||+|++++..+.-.  ..++..                                  .
T Consensus       177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~  256 (381)
T COG0116         177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI  256 (381)
T ss_pred             HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence            3555567777788888899999999999986653321  111111                                  3


Q ss_pred             EEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeEEEEccccc-chhh---HH----HHHHHHHHh
Q psy11646         63 LVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLH-WVQD---QR----QAISNIYNL  130 (433)
Q Consensus        63 v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~-~~~d---~~----~~l~~i~~~  130 (433)
                      ++|+|+++.+++.|+.++    ....|+|.++|+.....+.   +.+|+|||+...- -+.+   ..    .+.+.+++.
T Consensus       257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~---~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~  333 (381)
T COG0116         257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL---EEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRL  333 (381)
T ss_pred             EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC---CcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHH
Confidence            789999999999999998    3356999999998854332   6899999998763 2222   22    233344455


Q ss_pred             ccCCCEEEEE
Q psy11646        131 LMPGGEVLLL  140 (433)
Q Consensus       131 LkpGG~lll~  140 (433)
                      ++--+..+++
T Consensus       334 ~~~ws~~v~t  343 (381)
T COG0116         334 LAGWSRYVFT  343 (381)
T ss_pred             hcCCceEEEE
Confidence            5555566654

>KOG4589|consensus

Probab=97.57  E-value=0.00057  Score=60.82  Aligned_cols=113  Identities=17%  Similarity=0.269  Sum_probs=72.4

Q ss_pred             HHHHhcCC-CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEe-cccCCcc----
Q psy11646         24 QYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVA-NIADQNL----   97 (433)
Q Consensus        24 ~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~-Di~~~~l----   97 (433)
                      ++-++.+. +|+.+|||+||.+|.|+.....+..|.+  .+.|+|+-.-.        ...++.++++ |+++...    
T Consensus        59 EindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g--~v~gVDllh~~--------p~~Ga~~i~~~dvtdp~~~~ki  128 (232)
T KOG4589|consen   59 EINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNG--MVLGVDLLHIE--------PPEGATIIQGNDVTDPETYRKI  128 (232)
T ss_pred             eehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCc--eEEEEeeeecc--------CCCCcccccccccCCHHHHHHH
Confidence            44555553 6899999999999999954444444665  89999985421        3356667776 7765421    


Q ss_pred             -cccccCcEeEEEEccccc--------chhh---HHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646         98 -ESIFLAKFNKIFSFYCLH--------WVQD---QRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus        98 -~~~~~~~fD~Vis~~~l~--------~~~d---~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                       +..++...|+|+|-..-.        |...   ...++.-....++|+|.++.-......
T Consensus       129 ~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e  189 (232)
T KOG4589|consen  129 FEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE  189 (232)
T ss_pred             HHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence             113347789999844321        2211   234556666788999999886554433

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.50  E-value=8.9e-05  Score=60.71  Aligned_cols=100  Identities=24%  Similarity=0.250  Sum_probs=44.3

Q ss_pred             EEECCCCChhHHHHhcccCCCCC-cEEEEEeCCHH---HHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEccc
Q psy11646         38 LDVGCGPGNVTSKLLLPNLPKSV-VKLVGLDVSPN---MIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYC  113 (433)
Q Consensus        38 LDIGcG~G~~~~~~l~~~~~~~~-~~v~gvDiS~~---~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~  113 (433)
                      ||||+..|..+..+ ++.++... .+++++|..+.   .-+..++.....+++++.++..+. ++....+++|+++.-..
T Consensus         1 lEiG~~~G~st~~l-~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-l~~~~~~~~dli~iDg~   78 (106)
T PF13578_consen    1 LEIGTYSGYSTLWL-ASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDF-LPSLPDGPIDLIFIDGD   78 (106)
T ss_dssp             ---------------------------EEEESS------------GGG-BTEEEEES-THHH-HHHHHH--EEEEEEES-
T ss_pred             Cccccccccccccc-cccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHH-HHHcCCCCEEEEEECCC
Confidence            69999999988444 44443332 37999999994   444444322335799999997653 33333479999998653


Q ss_pred             ccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        114 LHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       114 l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                       |..+.....+..+.+.|+|||.+++-
T Consensus        79 -H~~~~~~~dl~~~~~~l~~ggviv~d  104 (106)
T PF13578_consen   79 -HSYEAVLRDLENALPRLAPGGVIVFD  104 (106)
T ss_dssp             ---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             -CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence             33345667789999999999988764

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.49  E-value=0.0018  Score=60.16  Aligned_cols=110  Identities=21%  Similarity=0.354  Sum_probs=75.2

Q ss_pred             HHHHHHhcCCC-CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCe-EEEEecccCCcccc
Q psy11646         22 LSQYIDQFKWT-DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKL-EFVVANIADQNLES   99 (433)
Q Consensus        22 l~~l~~~l~~~-~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i-~~~~~Di~~~~l~~   99 (433)
                      |...++.+... ++..+||||+.||.+|.-++.    .+..+|+++|..-..+..--+.  ++++ .+...++.... ++
T Consensus        67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq----~gAk~VyavDVG~~Ql~~kLR~--d~rV~~~E~tN~r~l~-~~  139 (245)
T COG1189          67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQ----RGAKHVYAVDVGYGQLHWKLRN--DPRVIVLERTNVRYLT-PE  139 (245)
T ss_pred             HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHH----cCCcEEEEEEccCCccCHhHhc--CCcEEEEecCChhhCC-HH
Confidence            44556666655 688999999999999954444    4446999999988766543322  2444 34555665542 22


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ...+..|++++--++-   ....++..+..+++|+|.++...
T Consensus       140 ~~~~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~Lv  178 (245)
T COG1189         140 DFTEKPDLIVIDVSFI---SLKLILPALLLLLKDGGDLVLLV  178 (245)
T ss_pred             HcccCCCeEEEEeehh---hHHHHHHHHHHhcCCCceEEEEe
Confidence            2334778888866654   34678899999999999887654

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=97.45  E-value=0.00019  Score=63.41  Aligned_cols=74  Identities=22%  Similarity=0.409  Sum_probs=49.8

Q ss_pred             EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCcccccccCc-EeEEEE
Q psy11646         36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNLESIFLAK-FNKIFS  110 (433)
Q Consensus        36 ~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l~~~~~~~-fD~Vis  110 (433)
                      .|+|+.||.|..+..++. .    +.+|+++|+++..++.|+.++   + ..+++++++|+.+. ........ +|+|++
T Consensus         2 ~vlD~fcG~GGNtIqFA~-~----~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~-~~~~~~~~~~D~vFl   75 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFAR-T----FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFEL-LKRLKSNKIFDVVFL   75 (163)
T ss_dssp             EEEETT-TTSHHHHHHHH-T----T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHH-GGGB------SEEEE
T ss_pred             EEEEeccCcCHHHHHHHH-h----CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHH-HhhccccccccEEEE
Confidence            699999999999966654 2    258999999999999999998   3 56899999998764 22211122 799998


Q ss_pred             ccccc
Q psy11646        111 FYCLH  115 (433)
Q Consensus       111 ~~~l~  115 (433)
                      ...+-
T Consensus        76 SPPWG   80 (163)
T PF09445_consen   76 SPPWG   80 (163)
T ss_dssp             ---BS
T ss_pred             CCCCC
Confidence            76543

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.43  E-value=0.00097  Score=59.90  Aligned_cols=101  Identities=17%  Similarity=0.204  Sum_probs=70.2

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeEEEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNKIFS  110 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis  110 (433)
                      .|++|||+|+|+|-.++..+.    .+...|+..|+.|......+-+.  ..-.+.+...|+...      +..||+++.
T Consensus        79 rgkrVLd~gagsgLvaIAaa~----aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~------~~~~Dl~La  148 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAAR----AGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGS------PPAFDLLLA  148 (218)
T ss_pred             ccceeeecccccChHHHHHHH----hhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCC------CcceeEEEe
Confidence            689999999999998743332    23357999999998888877776  334566777776542      267999999


Q ss_pred             cccccchhhHHHHHHHHHHhccCCCEEEE-EeccC
Q psy11646        111 FYCLHWVQDQRQAISNIYNLLMPGGEVLL-LLNAF  144 (433)
Q Consensus       111 ~~~l~~~~d~~~~l~~i~~~LkpGG~lll-~~~~~  144 (433)
                      ..+++.-....+++. ..+.++..|.-++ .+++.
T Consensus       149 gDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R  182 (218)
T COG3897         149 GDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGR  182 (218)
T ss_pred             eceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence            998876555566677 5555655554444 34433

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.42  E-value=0.0011  Score=65.54  Aligned_cols=102  Identities=17%  Similarity=0.213  Sum_probs=77.9

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      .+|.+|||.=||-|.++..++..    +...|+++|++|.+++..++++    ....+..+++|........   +.+|.
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~----g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~---~~aDr  259 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKK----GRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL---GVADR  259 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhc----CCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc---ccCCE
Confidence            46999999999999999655542    2135999999999999999998    2244889999988753322   77999


Q ss_pred             EEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646        108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      |+++..-    +....+....+.+++||.+..-....
T Consensus       260 Iim~~p~----~a~~fl~~A~~~~k~~g~iHyy~~~~  292 (341)
T COG2520         260 IIMGLPK----SAHEFLPLALELLKDGGIIHYYEFVP  292 (341)
T ss_pred             EEeCCCC----cchhhHHHHHHHhhcCcEEEEEeccc
Confidence            9998874    23456667778888899988876544

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.40  E-value=0.0017  Score=56.17  Aligned_cols=102  Identities=21%  Similarity=0.391  Sum_probs=63.1

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCC--CCCcEEEEEeCCHHHHHHHHhhc---C---CCCeEEEEecccCCcccccccC
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLP--KSVVKLVGLDVSPNMIKHAKNHH---T---NPKLEFVVANIADQNLESIFLA  103 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~--~~~~~v~gvDiS~~~l~~A~~~~---~---~~~i~~~~~Di~~~~l~~~~~~  103 (433)
                      .+..+|+|+|||.|.++ .+++..++  ....+|+|+|.++..++.|+++.   .   ..++++...++.....    ..
T Consensus        24 ~~~~~vvD~GsG~GyLs-~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~   98 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLS-RALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS----SD   98 (141)
T ss_pred             CCCCEEEEeCCChhHHH-HHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc----cC
Confidence            56889999999999999 55554221  01259999999999999988876   2   1445555555543211    24


Q ss_pred             cEeEEEEcccccchhhH-HHHHHHHHHhccCCCEEEEEeccC
Q psy11646        104 KFNKIFSFYCLHWVQDQ-RQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       104 ~fD~Vis~~~l~~~~d~-~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      ..++++..   |...+. ..+++...+   |+-..++..+..
T Consensus        99 ~~~~~vgL---HaCG~Ls~~~l~~~~~---~~~~~l~~vpCC  134 (141)
T PF13679_consen   99 PPDILVGL---HACGDLSDRALRLFIR---PNARFLVLVPCC  134 (141)
T ss_pred             CCeEEEEe---ecccchHHHHHHHHHH---cCCCEEEEcCCc
Confidence            56777764   444443 234444333   665555554443

>KOG1122|consensus

Probab=97.35  E-value=0.00074  Score=67.23  Aligned_cols=114  Identities=15%  Similarity=0.149  Sum_probs=79.3

Q ss_pred             cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcE
Q psy11646         29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKF  105 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~f  105 (433)
                      +..++|.||||.++.+|.-|. .++.+.... ..+++.|.+..-+...+.++   +..+......|....+-.. ..++|
T Consensus       237 L~Pq~gERIlDmcAAPGGKTt-~IAalMkn~-G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~-~~~~f  313 (460)
T KOG1122|consen  237 LDPQPGERILDMCAAPGGKTT-HIAALMKNT-GVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKE-FPGSF  313 (460)
T ss_pred             cCCCCCCeecchhcCCCchHH-HHHHHHcCC-ceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccc-cCccc
Confidence            345689999999999999884 444444333 49999999999998888877   5566666777766532222 23489


Q ss_pred             eEEEEcccccc------------hh----------hHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646        106 NKIFSFYCLHW------------VQ----------DQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus       106 D~Vis~~~l~~------------~~----------d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      |-|+.-.....            ..          -+++.+.....++++||+|+.++.+-.
T Consensus       314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~  375 (460)
T KOG1122|consen  314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT  375 (460)
T ss_pred             ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence            99985221111            11          145678888999999999998865443

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.34  E-value=0.0019  Score=63.39  Aligned_cols=87  Identities=15%  Similarity=0.213  Sum_probs=61.6

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSF  111 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~  111 (433)
                      .+|.++|||||++|.++..++.    .+ .+|+++|..+ |....   ...++|.....|......+   .+.+|.++|-
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~----rG-~~V~AVD~g~-l~~~L---~~~~~V~h~~~d~fr~~p~---~~~vDwvVcD  277 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVR----RG-MFVTAVDNGP-MAQSL---MDTGQVEHLRADGFKFRPP---RKNVDWLVCD  277 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHH----cC-CEEEEEechh-cCHhh---hCCCCEEEEeccCcccCCC---CCCCCEEEEe
Confidence            5799999999999999954443    23 5999999664 33222   2457888888886554221   3789999996


Q ss_pred             ccccchhhHHHHHHHHHHhccCC
Q psy11646        112 YCLHWVQDQRQAISNIYNLLMPG  134 (433)
Q Consensus       112 ~~l~~~~d~~~~l~~i~~~LkpG  134 (433)
                      .+    ..+..+.+-+.++|..|
T Consensus       278 mv----e~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        278 MV----EKPARVAELMAQWLVNG  296 (357)
T ss_pred             cc----cCHHHHHHHHHHHHhcC
Confidence            65    34667777888888755

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.30  E-value=0.0025  Score=57.60  Aligned_cols=110  Identities=14%  Similarity=0.237  Sum_probs=74.7

Q ss_pred             HhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcccccccCcE
Q psy11646         27 DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLESIFLAKF  105 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~~~~~~f  105 (433)
                      +.++.++|.+||=+|+.+|... ..++...+.+  .+++++.|+.+....-... ..+|+-=+..|+....--...-+..
T Consensus        70 ~~~pi~~g~~VLYLGAasGTTv-SHVSDIv~~G--~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~V  146 (231)
T COG1889          70 KNFPIKEGSKVLYLGAASGTTV-SHVSDIVGEG--RIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKV  146 (231)
T ss_pred             ccCCcCCCCEEEEeeccCCCcH-hHHHhccCCC--cEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccc
Confidence            3455678999999999999987 5556666655  8999999998765543333 2367777778876531111223567


Q ss_pred             eEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        106 NKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       106 D~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |+|+.--+  -....+-+..|+...||+||.++++.
T Consensus       147 Dviy~DVA--Qp~Qa~I~~~Na~~FLk~~G~~~i~i  180 (231)
T COG1889         147 DVIYQDVA--QPNQAEILADNAEFFLKKGGYVVIAI  180 (231)
T ss_pred             cEEEEecC--CchHHHHHHHHHHHhcccCCeEEEEE
Confidence            88876322  11223456889999999999888864

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=97.30  E-value=0.0025  Score=64.00  Aligned_cols=142  Identities=15%  Similarity=0.230  Sum_probs=76.6

Q ss_pred             chhhhhhhhhhcHHHHHHHH---HHHHHhcCC---C-CCCEEEEECCCCChhHHHHhccc-------CC-----CCCcEE
Q psy11646          3 KATLYETNNSMQQLDAAKLL---SQYIDQFKW---T-DNESVLDVGCGPGNVTSKLLLPN-------LP-----KSVVKL   63 (433)
Q Consensus         3 ~a~~Y~~~~~~~~~~~~~ll---~~l~~~l~~---~-~~~~VLDIGcG~G~~~~~~l~~~-------~~-----~~~~~v   63 (433)
                      .+..|.+....|+..+....   ++.+..+..   . ...+|+|+|||+|..+...+...       ..     ..-.++
T Consensus        26 g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv  105 (386)
T PLN02668         26 GEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSA  105 (386)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceE
Confidence            45778888888887555443   443322321   1 35689999999998774332211       10     001467


Q ss_pred             EEEeCCHHHHHHHHhhc----------------CCCCeEEEEecccCCcccc-cccCcEeEEEEcccccchhhH------
Q psy11646         64 VGLDVSPNMIKHAKNHH----------------TNPKLEFVVANIADQNLES-IFLAKFNKIFSFYCLHWVQDQ------  120 (433)
Q Consensus        64 ~gvDiS~~~l~~A~~~~----------------~~~~i~~~~~Di~~~~l~~-~~~~~fD~Vis~~~l~~~~d~------  120 (433)
                      ..-|.-..-....=+.+                ...+ .+...-+-..-... ++.++.++++|++++||+...      
T Consensus       106 ~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~-~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d  184 (386)
T PLN02668        106 FFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR-SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTD  184 (386)
T ss_pred             EecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC-ceEEEecCccccccccCCCceEEEEeeccceecccCchhhcc
Confidence            77776432221111111                0001 12222211110111 344899999999999998531      


Q ss_pred             --------------------------------HHHHHHHHHhccCCCEEEEEeccCC
Q psy11646        121 --------------------------------RQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus       121 --------------------------------~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                                                      ...|+.-.+-|.|||+++++..+..
T Consensus       185 ~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~  241 (386)
T PLN02668        185 KRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRT  241 (386)
T ss_pred             CCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCC
Confidence                                            1223344556889999998887653

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.28  E-value=0.00054  Score=60.97  Aligned_cols=96  Identities=14%  Similarity=0.255  Sum_probs=74.0

Q ss_pred             CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEEEE
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKIFS  110 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis  110 (433)
                      .+.+.|+|+|+|-++ .++++.    ..+|++++.+|.....|+++.   +..+++++.+|+.+..+     +..|+|+|
T Consensus        33 ~d~~~DLGaGsGiLs-~~Aa~~----A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-----e~ADvvic  102 (252)
T COG4076          33 EDTFADLGAGSGILS-VVAAHA----AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-----ENADVVIC  102 (252)
T ss_pred             hhceeeccCCcchHH-HHHHhh----hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-----cccceeHH
Confidence            468999999999998 444432    248999999999999999996   56789999999988765     35788887


Q ss_pred             ccc--ccchhhHHHHHHHHHHhccCCCEEEE
Q psy11646        111 FYC--LHWVQDQRQAISNIYNLLMPGGEVLL  139 (433)
Q Consensus       111 ~~~--l~~~~d~~~~l~~i~~~LkpGG~lll  139 (433)
                      -..  .--.+.+..+++.+.+.||-++.++=
T Consensus       103 EmlDTaLi~E~qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076         103 EMLDTALIEEKQVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             HHhhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence            332  11223456788888999999988764

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.26  E-value=0.0012  Score=64.29  Aligned_cols=92  Identities=21%  Similarity=0.359  Sum_probs=68.5

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCc--
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQN--   96 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~--   96 (433)
                      +++++++.+..++++.++|.-+|.|..+..++. .++.+  +|+|+|.++.+++.|++++  ...++++++++..+..  
T Consensus         8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~-~l~~g--~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~   84 (305)
T TIGR00006         8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILE-QLGTG--RLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEH   84 (305)
T ss_pred             hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHH-hCCCC--EEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHH
Confidence            466777777778889999999999999965654 44444  9999999999999999987  2357889888877632  


Q ss_pred             ccccccCcEeEEEEccccc
Q psy11646         97 LESIFLAKFNKIFSFYCLH  115 (433)
Q Consensus        97 l~~~~~~~fD~Vis~~~l~  115 (433)
                      +......++|.|+....+.
T Consensus        85 l~~~~~~~vDgIl~DLGvS  103 (305)
T TIGR00006        85 LDELLVTKIDGILVDLGVS  103 (305)
T ss_pred             HHhcCCCcccEEEEeccCC
Confidence            1111225688888766543

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG2352|consensus

Probab=97.21  E-value=0.0039  Score=63.54  Aligned_cols=104  Identities=15%  Similarity=0.367  Sum_probs=83.1

Q ss_pred             CCC-EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646         33 DNE-SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        33 ~~~-~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      +.. ++|-+|||.-.++..+.+    .++..++.+|+|+..++....+.  ....+.+...|+....+++   ++||+|+
T Consensus        47 p~~~~~l~lGCGNS~l~e~ly~----~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fed---ESFdiVI  119 (482)
T KOG2352|consen   47 PSDFKILQLGCGNSELSEHLYK----NGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFED---ESFDIVI  119 (482)
T ss_pred             hhhceeEeecCCCCHHHHHHHh----cCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCC---cceeEEE
Confidence            444 999999999887744433    56678999999999999888776  4466889999998887776   9999999


Q ss_pred             Ecccccchh----------hHHHHHHHHHHhccCCCEEEEEecc
Q psy11646        110 SFYCLHWVQ----------DQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       110 s~~~l~~~~----------d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      .-+.++++-          .....+.++.+++++||+.+.....
T Consensus       120 dkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~  163 (482)
T KOG2352|consen  120 DKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV  163 (482)
T ss_pred             ecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence            999888762          1234578999999999998877653

>KOG2187|consensus

Probab=97.17  E-value=0.0008  Score=68.66  Aligned_cols=74  Identities=24%  Similarity=0.456  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEeccc
Q psy11646         17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIA   93 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~   93 (433)
                      .++.+-.-+-+....+.+..+||+.||||.++ ..++    .+..+|+|+++++++++.|++++   +..|.+|+++-.+
T Consensus       367 ~aevLys~i~e~~~l~~~k~llDv~CGTG~ig-lala----~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE  441 (534)
T KOG2187|consen  367 AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIG-LALA----RGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAE  441 (534)
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEEeecCCcee-hhhh----ccccceeeeecChhhcchhhhcchhcCccceeeeecchh
Confidence            34444444445555677888999999999998 4444    33358999999999999999998   5578899999665


Q ss_pred             CC
Q psy11646         94 DQ   95 (433)
Q Consensus        94 ~~   95 (433)
                      +.
T Consensus       442 ~~  443 (534)
T KOG2187|consen  442 DL  443 (534)
T ss_pred             hc
Confidence            53

>KOG2198|consensus

Probab=97.04  E-value=0.01  Score=58.57  Aligned_cols=118  Identities=20%  Similarity=0.231  Sum_probs=78.3

Q ss_pred             cCCCCCCEEEEECCCCChhHHHHhcccCCCC-CcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCccc------
Q psy11646         29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKS-VVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLE------   98 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~-~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~------   98 (433)
                      +..+|+.+|||+++.+|.-+..++....... -..+++-|.++.-+...+...   ...++.+...|+...+-.      
T Consensus       151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~  230 (375)
T KOG2198|consen  151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGN  230 (375)
T ss_pred             cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCc
Confidence            4458999999999999999977777665331 137999999987666555544   445555555555443211      


Q ss_pred             ccccCcEeEEEEcccc-------------c--chh--------hHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646         99 SIFLAKFNKIFSFYCL-------------H--WVQ--------DQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l-------------~--~~~--------d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      +.....||-|++--..             .  |..        -+-..+.+-.++||+||.++-++.+.+|
T Consensus       231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp  301 (375)
T KOG2198|consen  231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP  301 (375)
T ss_pred             hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence            1123579999972111             0  110        1245688999999999999999877776

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.01  E-value=0.0036  Score=60.74  Aligned_cols=82  Identities=18%  Similarity=0.217  Sum_probs=46.5

Q ss_pred             CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--C---CCCeEEEEecccCCcccc--cccCcEe
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--T---NPKLEFVVANIADQNLES--IFLAKFN  106 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~---~~~i~~~~~Di~~~~l~~--~~~~~fD  106 (433)
                      ..++||||+|..+.- .+|.....  +++++|+|+++..++.|+++.  .   ..+|+++...-...-+..  ...+.||
T Consensus       103 ~v~glDIGTGAscIY-pLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~d  179 (299)
T PF05971_consen  103 KVRGLDIGTGASCIY-PLLGAKLY--GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFD  179 (299)
T ss_dssp             --EEEEES-TTTTHH-HHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred             ceEeecCCccHHHHH-HHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceee
Confidence            468999999999875 44443322  389999999999999999988  2   357887665422221221  2236899


Q ss_pred             EEEEcccccchh
Q psy11646        107 KIFSFYCLHWVQ  118 (433)
Q Consensus       107 ~Vis~~~l~~~~  118 (433)
                      +.+|+..+|...
T Consensus       180 ftmCNPPFy~s~  191 (299)
T PF05971_consen  180 FTMCNPPFYSSQ  191 (299)
T ss_dssp             EEEE-----SS-
T ss_pred             EEecCCccccCh
Confidence            999999998664

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG1098|consensus

Probab=96.99  E-value=0.00027  Score=73.01  Aligned_cols=114  Identities=25%  Similarity=0.387  Sum_probs=71.9

Q ss_pred             cHHHHHHHHHHHHHhcCC-CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecc
Q psy11646         14 QQLDAAKLLSQYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANI   92 (433)
Q Consensus        14 ~~~~~~~ll~~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di   92 (433)
                      ..+.+..+| ++-.++.+ .++..|||+||.+|.|. ..+.+.+|-+ .-|+|+|+-|--        ..+++..++.||
T Consensus        25 rsRsaFKLl-Qln~ky~fl~~a~~vlDLcaAPG~W~-QVA~q~~pv~-slivGvDl~pik--------p~~~c~t~v~dI   93 (780)
T KOG1098|consen   25 RSRSAFKLL-QLNKKYKFLEKAHVVLDLCAAPGGWL-QVASQSMPVG-SLIVGVDLVPIK--------PIPNCDTLVEDI   93 (780)
T ss_pred             hHHHHHHHH-HHHHHhccccccchheeeccCCcHHH-HHHHHhCCCC-ceEEEeeeeecc--------cCCccchhhhhh
Confidence            334555555 44555543 57788999999999999 7777777765 689999997632        235666677777


Q ss_pred             cCCcccc-----cccCcEeEEEEccc----ccchhhH-------HHHHHHHHHhccCCCEEE
Q psy11646         93 ADQNLES-----IFLAKFNKIFSFYC----LHWVQDQ-------RQAISNIYNLLMPGGEVL  138 (433)
Q Consensus        93 ~~~~l~~-----~~~~~fD~Vis~~~----l~~~~d~-------~~~l~~i~~~LkpGG~ll  138 (433)
                      +......     ......|+|+.-.+    ..|..|.       -.+++-....|+.||.++
T Consensus        94 ttd~cr~~l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv  155 (780)
T KOG1098|consen   94 TTDECRSKLRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV  155 (780)
T ss_pred             hHHHHHHHHHHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence            6543221     11244588886432    2344431       234555667788888844

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.90  E-value=0.0065  Score=57.08  Aligned_cols=104  Identities=15%  Similarity=0.267  Sum_probs=68.1

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      .+..+|+|||||.=-++..++. ..+ + ..|+|.||+..+++....-.  ......+...|+...+.+    ...|+.+
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~-~~~-~-a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~----~~~DlaL  176 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMP-EAP-G-ATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPK----EPADLAL  176 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTT-SST-T--EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTT----SEESEEE
T ss_pred             CCCchhhhhhccCCceehhhcc-cCC-C-cEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCC----CCcchhh
Confidence            3578999999999988855543 222 2 59999999999999988776  446777888898776433    7899999


Q ss_pred             EcccccchhhHHH-HHHHHHHhccCCCEEEEEecc
Q psy11646        110 SFYCLHWVQDQRQ-AISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       110 s~~~l~~~~d~~~-~l~~i~~~LkpGG~lll~~~~  143 (433)
                      ..-+++-++.+.. .--++.+.++ .-.++++++.
T Consensus       177 llK~lp~le~q~~g~g~~ll~~~~-~~~~vVSfPt  210 (251)
T PF07091_consen  177 LLKTLPCLERQRRGAGLELLDALR-SPHVVVSFPT  210 (251)
T ss_dssp             EET-HHHHHHHSTTHHHHHHHHSC-ESEEEEEEES
T ss_pred             HHHHHHHHHHHhcchHHHHHHHhC-CCeEEEeccc
Confidence            9999998865433 2234444443 2356666654

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=96.90  E-value=0.0018  Score=58.05  Aligned_cols=118  Identities=14%  Similarity=0.181  Sum_probs=71.6

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCH----------HHHHHHHhhcCCCCeEEEEec
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSP----------NMIKHAKNHHTNPKLEFVVAN   91 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~----------~~l~~A~~~~~~~~i~~~~~D   91 (433)
                      -.+++....++++.+|+|+-.|.|.++ +++.......+ .|++.-..+          .+-..+++. ...+++.+-.+
T Consensus        37 p~E~L~FaGlkpg~tVid~~PGgGy~T-rI~s~~vgp~G-~Vy~~~p~e~~~~~~~~~~r~~~~~~e~-~~aN~e~~~~~  113 (238)
T COG4798          37 PGEVLAFAGLKPGATVIDLIPGGGYFT-RIFSPAVGPKG-KVYAYVPAELTKFAKREGPRLNAAAREP-VYANVEVIGKP  113 (238)
T ss_pred             ccceeEEeccCCCCEEEEEecCCccHh-hhhchhcCCce-eEEEecchhhcccccchhhhhhhhhhhh-hhhhhhhhCCc
Confidence            335666777899999999999999999 77777665442 666653332          222222222 12334433333


Q ss_pred             ccCCcccccccCcEeEEEEcccccc-------hhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646         92 IADQNLESIFLAKFNKIFSFYCLHW-------VQDQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus        92 i~~~~l~~~~~~~fD~Vis~~~l~~-------~~d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      +.....+    +..|++......|.       .....++.+.+++.|||||.+++.+....+
T Consensus       114 ~~A~~~p----q~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~p  171 (238)
T COG4798         114 LVALGAP----QKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADP  171 (238)
T ss_pred             ccccCCC----CcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccC
Confidence            3333222    34455554333332       234578899999999999999988755443

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=96.80  E-value=0.0032  Score=54.14  Aligned_cols=56  Identities=16%  Similarity=0.351  Sum_probs=43.2

Q ss_pred             EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccC
Q psy11646         36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIAD   94 (433)
Q Consensus        36 ~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~   94 (433)
                      .|||||||.|.++ ..++...+..  +++++|+++.+.+.+++++   ...++++....+.+
T Consensus         1 ~vlDiGa~~G~~~-~~~~~~~~~~--~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTS-LYFARKGAEG--RVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHH-HHHHHhCCCC--EEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            4899999999998 4555554443  8999999999999999886   22457777777654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG3115|consensus

Probab=96.69  E-value=0.0096  Score=53.86  Aligned_cols=104  Identities=18%  Similarity=0.364  Sum_probs=68.9

Q ss_pred             CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----------CCCCeEEEEecccCCcccc-ccc
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----------TNPKLEFVVANIADQNLES-IFL  102 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----------~~~~i~~~~~Di~~~~l~~-~~~  102 (433)
                      ...+.|||||-|.++ .-|++.+|..  -+.|++|--..-++.+++.          ...++.+...+.... +++ +..
T Consensus        61 kvefaDIGCGyGGLl-v~Lsp~fPdt--LiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~-lpn~f~k  136 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLL-MKLAPKFPDT--LILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF-LPNFFEK  136 (249)
T ss_pred             cceEEeeccCccchh-hhccccCccc--eeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh-ccchhhh
Confidence            356899999999999 6778888886  8999999888877777765          124566666665543 343 222


Q ss_pred             CcEeEEEEcccccchhh--------HHHHHHHHHHhccCCCEEEEEe
Q psy11646        103 AKFNKIFSFYCLHWVQD--------QRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~~d--------~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ++.+..+....=-|...        ....+.+..-+|++||.++...
T Consensus       137 gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit  183 (249)
T KOG3115|consen  137 GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT  183 (249)
T ss_pred             cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence            44443333332222211        1346788889999999988653

>KOG2730|consensus

Probab=96.54  E-value=0.0038  Score=57.11  Aligned_cols=97  Identities=20%  Similarity=0.308  Sum_probs=68.0

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccc--cccCcEe
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLES--IFLAKFN  106 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~--~~~~~fD  106 (433)
                      ....|+|.-||.|+.+..++.    .+ ..|+++|++|.-+.-|+.++    -..+|+|+++|+.+. ...  +....+|
T Consensus        94 ~~~~iidaf~g~gGntiqfa~----~~-~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~-~~~lq~~K~~~~  167 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFAL----QG-PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDL-ASKLKADKIKYD  167 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHH----hC-CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHH-HHHHhhhhheee
Confidence            355799999999999866655    22 48999999999999999998    235999999998764 221  2235578


Q ss_pred             EEEEcccccchhhHHHHHHHHHHhccCCC
Q psy11646        107 KIFSFYCLHWVQDQRQAISNIYNLLMPGG  135 (433)
Q Consensus       107 ~Vis~~~l~~~~d~~~~l~~i~~~LkpGG  135 (433)
                      +|+.+.......-...-+-.+...++|.|
T Consensus       168 ~vf~sppwggp~y~~~~~~DL~~~~~p~~  196 (263)
T KOG2730|consen  168 CVFLSPPWGGPSYLRADVYDLETHLKPMG  196 (263)
T ss_pred             eeecCCCCCCcchhhhhhhhhhhhcchhH
Confidence            88887776554333344445555555543

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.50  E-value=0.022  Score=56.00  Aligned_cols=104  Identities=20%  Similarity=0.242  Sum_probs=74.1

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----------CCCCeEEEEecccCCccccccc
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----------TNPKLEFVVANIADQNLESIFL  102 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----------~~~~i~~~~~Di~~~~l~~~~~  102 (433)
                      .-.+||-+|.|.|-..+++++  .| +..+++-+|.+|+|++.++++.          .+++++++..|+.+. +.. ..
T Consensus       289 ~a~~vLvlGGGDGLAlRellk--yP-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~w-lr~-a~  363 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLK--YP-QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQW-LRT-AA  363 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHh--CC-CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHH-HHh-hc
Confidence            356899999999999866654  23 2369999999999999998433          357888888887664 222 23


Q ss_pred             CcEeEEEEcccccchhh-----HHHHHHHHHHhccCCCEEEEEe
Q psy11646        103 AKFNKIFSFYCLHWVQD-----QRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~~d-----~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +.||.||.-..=-..+.     -..+..-+.+.|+++|.+++..
T Consensus       364 ~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa  407 (508)
T COG4262         364 DMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA  407 (508)
T ss_pred             ccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence            68999997432111111     1346777889999999998863

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=96.48  E-value=0.0076  Score=55.83  Aligned_cols=52  Identities=13%  Similarity=0.179  Sum_probs=37.6

Q ss_pred             CcEeEEEEcccccchhh-----------HHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhh
Q psy11646        103 AKFNKIFSFYCLHWVQD-----------QRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKL  154 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~~d-----------~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~  154 (433)
                      ++||+|+|..+.++..+           ...+++++.++|+|||.+++.........+.+..+
T Consensus       116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l  178 (209)
T PRK11188        116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREI  178 (209)
T ss_pred             CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHH
Confidence            57899998776655432           24689999999999999999776655554544433

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=96.39  E-value=0.018  Score=55.42  Aligned_cols=91  Identities=20%  Similarity=0.243  Sum_probs=68.5

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNL   97 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l   97 (433)
                      =++.+.++.+..++++..+|.--|.|..+..+|.+.-+.  .+++|+|.++.+++.|+++.  ...++.+++..+.....
T Consensus        10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~--~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~   87 (314)
T COG0275          10 VLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDL--GRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAE   87 (314)
T ss_pred             hHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCC--CeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHH
Confidence            467788888988999999999999999996666654333  38999999999999999988  34688888887765321


Q ss_pred             c--ccccCcEeEEEEcc
Q psy11646         98 E--SIFLAKFNKIFSFY  112 (433)
Q Consensus        98 ~--~~~~~~fD~Vis~~  112 (433)
                      .  ....+++|-|+.-.
T Consensus        88 ~l~~~~i~~vDGiL~DL  104 (314)
T COG0275          88 ALKELGIGKVDGILLDL  104 (314)
T ss_pred             HHHhcCCCceeEEEEec
Confidence            1  11125677776543

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=96.36  E-value=0.018  Score=49.45  Aligned_cols=83  Identities=13%  Similarity=0.261  Sum_probs=56.2

Q ss_pred             EEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCccccccc-CcEeEEEEcccccch---------hhHHHHHHHH
Q psy11646         62 KLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFL-AKFNKIFSFYCLHWV---------QDQRQAISNI  127 (433)
Q Consensus        62 ~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~-~~fD~Vis~~~l~~~---------~d~~~~l~~i  127 (433)
                      +|+|.||.+++++.+++++    ...+++++..+=+.  +..... +++|.++.|...---         +..-.+++.+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~--l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a   78 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHEN--LDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA   78 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGG--GGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHH--HHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence            5899999999999999998    12478888776554  333223 489999987654211         1245788999


Q ss_pred             HHhccCCCEEEEEeccCCc
Q psy11646        128 YNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       128 ~~~LkpGG~lll~~~~~~p  146 (433)
                      .++|+|||.+.++....++
T Consensus        79 l~lL~~gG~i~iv~Y~GH~   97 (140)
T PF06962_consen   79 LELLKPGGIITIVVYPGHP   97 (140)
T ss_dssp             HHHEEEEEEEEEEE--STC
T ss_pred             HHhhccCCEEEEEEeCCCC
Confidence            9999999999998765554

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.35  E-value=0.014  Score=57.01  Aligned_cols=89  Identities=20%  Similarity=0.376  Sum_probs=59.3

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCc--
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQN--   96 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~--   96 (433)
                      ++.++++.+..+++...+|.--|.|+.+..+|... +.+  +++|+|.++.+++.|++++  ...++.++..++.+..  
T Consensus         8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~-~~~--~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~   84 (310)
T PF01795_consen    8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKL-PNG--RLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEY   84 (310)
T ss_dssp             THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT--TT---EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHH
T ss_pred             cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhC-CCC--eEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHH
Confidence            35667777777889999999999999996666544 444  9999999999999999988  3578889888876532  


Q ss_pred             cccc-ccCcEeEEEEcc
Q psy11646         97 LESI-FLAKFNKIFSFY  112 (433)
Q Consensus        97 l~~~-~~~~fD~Vis~~  112 (433)
                      +... ....+|.|+.-.
T Consensus        85 l~~~~~~~~~dgiL~DL  101 (310)
T PF01795_consen   85 LKELNGINKVDGILFDL  101 (310)
T ss_dssp             HHHTTTTS-EEEEEEE-
T ss_pred             HHHccCCCccCEEEEcc
Confidence            1111 224678777643

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=96.29  E-value=0.025  Score=56.30  Aligned_cols=123  Identities=15%  Similarity=0.179  Sum_probs=61.1

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccC-------CC------CCcEEEEEeCCHHHHHHHHhhc-------
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNL-------PK------SVVKLVGLDVSPNMIKHAKNHH-------   80 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~-------~~------~~~~v~gvDiS~~~l~~A~~~~-------   80 (433)
                      .+.++...-......+|+|+||.+|..+...+....       ..      .-.+|+..|.-..-....=+.+       
T Consensus         4 ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~   83 (334)
T PF03492_consen    4 AIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSL   83 (334)
T ss_dssp             HHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHH
T ss_pred             HHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhcc
Confidence            344444333344577999999999999865544221       11      1146777776432221111111       


Q ss_pred             CCCCeEEE---EecccCCcccccccCcEeEEEEcccccchhh--------------------------------------
Q psy11646         81 TNPKLEFV---VANIADQNLESIFLAKFNKIFSFYCLHWVQD--------------------------------------  119 (433)
Q Consensus        81 ~~~~i~~~---~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d--------------------------------------  119 (433)
                      ...+--|.   -+..-..-+   +.++.|+++|++++||+..                                      
T Consensus        84 ~~~~~~f~~gvpgSFy~rLf---P~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~  160 (334)
T PF03492_consen   84 KKFRNYFVSGVPGSFYGRLF---PSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQK  160 (334)
T ss_dssp             HHTTSEEEEEEES-TTS--S----TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHH
T ss_pred             CCCceEEEEecCchhhhccC---CCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHH
Confidence            00111222   223322223   3489999999999999731                                      


Q ss_pred             -HHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        120 -QRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       120 -~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                       ....|+.=.+-|+|||+++++.++...
T Consensus       161 D~~~FL~~Ra~ELv~GG~mvl~~~gr~~  188 (334)
T PF03492_consen  161 DFSSFLKARAEELVPGGRMVLTFLGRDE  188 (334)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEEE-ST
T ss_pred             HHHHHHHHhhheeccCcEEEEEEeeccc
Confidence             112244445668899999999876554

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.08  E-value=0.028  Score=51.53  Aligned_cols=116  Identities=15%  Similarity=0.245  Sum_probs=58.2

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhc---ccC-CCCCcEEEEEeCCHHHHHH-HHhhc-CCCCeEEEEeccc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLL---PNL-PKSVVKLVGLDVSPNMIKH-AKNHH-TNPKLEFVVANIA   93 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~---~~~-~~~~~~v~gvDiS~~~l~~-A~~~~-~~~~i~~~~~Di~   93 (433)
                      -.+.+++-.+   ++..|+|+|.-.|..+ .+.+   ..+ +.+  +|+|+|+....... |.+.. ..++|+++++|..
T Consensus        22 ~~~qeli~~~---kPd~IIE~Gi~~GGSl-i~~A~ml~~~~~~~--~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~   95 (206)
T PF04989_consen   22 VAYQELIWEL---KPDLIIETGIAHGGSL-IFWASMLELLGGKG--KVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSI   95 (206)
T ss_dssp             HHHHHHHHHH-----SEEEEE--TTSHHH-HHHHHHHHHTT-----EEEEEES-GTT--S-GGGG----TTEEEEES-SS
T ss_pred             HHHHHHHHHh---CCCeEEEEecCCCchH-HHHHHHHHHhCCCc--eEEEEeCCcchhchHHHhhccccCceEEEECCCC
Confidence            3444555444   3679999999999877 3333   223 444  99999996543322 22221 3479999999986


Q ss_pred             CCccccc---ccCcEeE-EEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         94 DQNLESI---FLAKFNK-IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        94 ~~~l~~~---~~~~fD~-Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +...-..   .....+- +++-.+-|...+..+.|+....++++|+++++.+
T Consensus        96 d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD  147 (206)
T PF04989_consen   96 DPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVED  147 (206)
T ss_dssp             STHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred             CHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence            5432110   1112232 3333344444566778888999999999988754

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=96.03  E-value=0.065  Score=49.43  Aligned_cols=96  Identities=17%  Similarity=0.180  Sum_probs=60.5

Q ss_pred             EEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeEEEEcc
Q psy11646         37 VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNKIFSFY  112 (433)
Q Consensus        37 VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~  112 (433)
                      |.||||--|.+...++...   ...+++++|+++.-++.|+++.    ...++++..+|-.+. +++  .+..|.|+..+
T Consensus         1 vaDIGtDHgyLpi~L~~~~---~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~~--~e~~d~ivIAG   74 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNG---KAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LKP--GEDVDTIVIAG   74 (205)
T ss_dssp             EEEET-STTHHHHHHHHTT---SEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---G--GG---EEEEEE
T ss_pred             CceeccchhHHHHHHHhcC---CCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cCC--CCCCCEEEEec
Confidence            6899999999996666532   1247999999999999999988    346799999985432 332  12378888766


Q ss_pred             cccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        113 CLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       113 ~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +=-  .-....+.+....++....+++.
T Consensus        75 MGG--~lI~~ILe~~~~~~~~~~~lILq  100 (205)
T PF04816_consen   75 MGG--ELIIEILEAGPEKLSSAKRLILQ  100 (205)
T ss_dssp             E-H--HHHHHHHHHTGGGGTT--EEEEE
T ss_pred             CCH--HHHHHHHHhhHHHhccCCeEEEe
Confidence            522  12445566666666666677765

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=96.01  E-value=0.24  Score=46.48  Aligned_cols=103  Identities=14%  Similarity=0.094  Sum_probs=59.4

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeEEEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNKIFS  110 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis  110 (433)
                      .|.+||-+|=..-...  .++.....  .+++.+|+++.++++.++.+  ..-.++....|+... +|+...++||+++.
T Consensus        44 ~gk~il~lGDDDLtSl--A~al~~~~--~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~-LP~~~~~~fD~f~T  118 (243)
T PF01861_consen   44 EGKRILFLGDDDLTSL--ALALTGLP--KRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDP-LPEELRGKFDVFFT  118 (243)
T ss_dssp             TT-EEEEES-TT-HHH--HHHHHT----SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS----TTTSS-BSEEEE
T ss_pred             cCCEEEEEcCCcHHHH--HHHhhCCC--CeEEEEEcCHHHHHHHHHHHHHcCCceEEEEeccccc-CCHHHhcCCCEEEe
Confidence            5889999985544333  22222222  49999999999999988776  223499999999874 77767799999999


Q ss_pred             cccccchhhHHHHHHHHHHhccCCC-EEEEEe
Q psy11646        111 FYCLHWVQDQRQAISNIYNLLMPGG-EVLLLL  141 (433)
Q Consensus       111 ~~~l~~~~d~~~~l~~i~~~LkpGG-~lll~~  141 (433)
                      -.+. ..+....++.+....||..| ..++..
T Consensus       119 DPPy-T~~G~~LFlsRgi~~Lk~~g~~gy~~~  149 (243)
T PF01861_consen  119 DPPY-TPEGLKLFLSRGIEALKGEGCAGYFGF  149 (243)
T ss_dssp             ---S-SHHHHHHHHHHHHHTB-STT-EEEEEE
T ss_pred             CCCC-CHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence            7653 23456677888888998655 555544

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein

Probab=95.96  E-value=0.022  Score=53.44  Aligned_cols=95  Identities=20%  Similarity=0.117  Sum_probs=56.7

Q ss_pred             CCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHHHHHHHHhcccceeEEecCCCCc
Q psy11646        199 DEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSR  278 (433)
Q Consensus       199 ~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~~~~~~l~~~F~~v~~~KP~~sr  278 (433)
                      ..++|+++|||--..+..-+.+.........-...+.++.|+-||++.+|+=.-.-...+ .++-+.|...+++.- +--
T Consensus       119 ~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~L-yel~~~F~~wt~FcT-~VN  196 (299)
T PF06460_consen  119 PDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSWNAQL-YELMGYFSWWTCFCT-AVN  196 (299)
T ss_dssp             SS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHH-HHHHTTEEEEEEEEE-GGG
T ss_pred             CCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccccHHH-HHHHhhcccEEEEec-ccC
Confidence            457999999998444433333333344455556788999999999999999776664444 455577888877752 333


Q ss_pred             ccccceeEEEeeccCCC
Q psy11646        279 NSSIESFIVCQNYRPPK  295 (433)
Q Consensus       279 ~~s~E~~~v~~~~~~~~  295 (433)
                      .+|+|+|++|.+|.+..
T Consensus       197 tSSSEaFLigiNYLg~~  213 (299)
T PF06460_consen  197 TSSSEAFLIGINYLGKF  213 (299)
T ss_dssp             TTSS-EEEEEEEE-SS-
T ss_pred             ccccceeEEeeeccCcc
Confidence            47999999999998873

This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.

>KOG2793|consensus

Probab=95.95  E-value=0.045  Score=51.70  Aligned_cols=106  Identities=17%  Similarity=0.123  Sum_probs=67.9

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHh--hc----C--CCCeEEEEecccCCcccccccCc
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN--HH----T--NPKLEFVVANIADQNLESIFLAK  104 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~--~~----~--~~~i~~~~~Di~~~~l~~~~~~~  104 (433)
                      ...+|||+|+|+|..+ .+++.. .  ..+|+..|+..........  .-    .  ...+....++...........+.
T Consensus        86 ~~~~vlELGsGtglvG-~~aa~~-~--~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~  161 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVG-ILAALL-L--GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPN  161 (248)
T ss_pred             cceeEEEecCCccHHH-HHHHHH-h--cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCC
Confidence            3567999999999766 333321 2  2488888875433322211  11    1  12455555555443222222344


Q ss_pred             -EeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646        105 -FNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       105 -fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                       ||+|++..+++..+..+.++.-++.+|..+|.+++...
T Consensus       162 ~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~  200 (248)
T KOG2793|consen  162 PFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYP  200 (248)
T ss_pred             cccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEe
Confidence             99999999999988889999999999999997666543

>PRK10742 putative methyltransferase; Provisional

Probab=95.88  E-value=0.03  Score=52.81  Aligned_cols=87  Identities=11%  Similarity=0.098  Sum_probs=62.1

Q ss_pred             HHHHhcCCCCCC--EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-C-------C----CCeEEEE
Q psy11646         24 QYIDQFKWTDNE--SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-T-------N----PKLEFVV   89 (433)
Q Consensus        24 ~l~~~l~~~~~~--~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~-------~----~~i~~~~   89 (433)
                      .+++-..++++.  +|||+-+|+|..+..++.    .+ .+|+++|-++.+....+..+ .       .    .+++++.
T Consensus        77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las----~G-~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~  151 (250)
T PRK10742         77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLAS----VG-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH  151 (250)
T ss_pred             HHHHHhCCCCCCCCEEEECCCCccHHHHHHHH----cC-CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence            455556667777  999999999999954443    23 47999999999887776655 1       1    3577778


Q ss_pred             ecccCCcccccccCcEeEEEEcccccch
Q psy11646         90 ANIADQNLESIFLAKFNKIFSFYCLHWV  117 (433)
Q Consensus        90 ~Di~~~~l~~~~~~~fD~Vis~~~l~~~  117 (433)
                      +|..+. +.. ...+||+|+.-.++.+-
T Consensus       152 ~da~~~-L~~-~~~~fDVVYlDPMfp~~  177 (250)
T PRK10742        152 ASSLTA-LTD-ITPRPQVVYLDPMFPHK  177 (250)
T ss_pred             CcHHHH-Hhh-CCCCCcEEEECCCCCCC
Confidence            887654 332 22479999998887664

>KOG1099|consensus

Probab=95.86  E-value=0.021  Score=52.57  Aligned_cols=117  Identities=21%  Similarity=0.210  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHhcCCCC-CCEEEEECCCCChhHHHHhcccCC---CCCc---EEEEEeCCHHHHHHHHhhcCCCCeEEEE
Q psy11646         17 DAAKLLSQYIDQFKWTD-NESVLDVGCGPGNVTSKLLLPNLP---KSVV---KLVGLDVSPNMIKHAKNHHTNPKLEFVV   89 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~~~-~~~VLDIGcG~G~~~~~~l~~~~~---~~~~---~v~gvDiS~~~l~~A~~~~~~~~i~~~~   89 (433)
                      .+.+++ ++-+.+.+-. -.|++|+++.+|.|+..+-+++..   ..+.   .++++|+.+-+        ..+++.-++
T Consensus        25 SAFKLl-qideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------PI~GV~qlq   95 (294)
T KOG1099|consen   25 SAFKLL-QIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------PIEGVIQLQ   95 (294)
T ss_pred             hHHHHh-hhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------ccCceEEee
Confidence            344444 3344444333 458999999999999444333332   1112   39999987632        447888899


Q ss_pred             ecccCCcccc-----cccCcEeEEEEcc-----cccchhh------HHHHHHHHHHhccCCCEEEEEec
Q psy11646         90 ANIADQNLES-----IFLAKFNKIFSFY-----CLHWVQD------QRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        90 ~Di~~~~l~~-----~~~~~fD~Vis~~-----~l~~~~d------~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      +||+.....+     +..++.|+|+|-+     .+|.+.+      ...++.-...+|+|||.++.-.+
T Consensus        96 ~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif  164 (294)
T KOG1099|consen   96 GDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF  164 (294)
T ss_pred             cccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence            9998754322     2336889999965     4666643      23557777789999999876443

>KOG1596|consensus

Probab=95.76  E-value=0.055  Score=50.34  Aligned_cols=108  Identities=15%  Similarity=0.229  Sum_probs=69.2

Q ss_pred             HHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHH----HHHHHHhhcCCCCeEEEEecccCCcccc-c
Q psy11646         26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPN----MIKHAKNHHTNPKLEFVVANIADQNLES-I  100 (433)
Q Consensus        26 ~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~----~l~~A~~~~~~~~i~~~~~Di~~~~l~~-~  100 (433)
                      ++.+..+|+.+||-+|+++|... ........+. .-|++++.|..    .+..|+++   +||--+.-|+... ..- -
T Consensus       149 vdnihikpGsKVLYLGAasGttV-SHvSDiVGpe-G~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP-~KYRm  222 (317)
T KOG1596|consen  149 VDNIHIKPGSKVLYLGAASGTTV-SHVSDIVGPE-GCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHP-AKYRM  222 (317)
T ss_pred             ccceeecCCceEEEeeccCCcee-ehhhcccCCC-ceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCc-hheee
Confidence            35566789999999999999876 3344443333 38999999874    44455555   5666566676532 110 1


Q ss_pred             ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +-.-.|+|++--.  .......+.-|....||+||.+++..
T Consensus       223 lVgmVDvIFaDva--qpdq~RivaLNA~~FLk~gGhfvisi  261 (317)
T KOG1596|consen  223 LVGMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFVISI  261 (317)
T ss_pred             eeeeEEEEeccCC--CchhhhhhhhhhhhhhccCCeEEEEE
Confidence            1134677766332  11223455778899999999999875

>KOG4058|consensus

Probab=95.50  E-value=0.034  Score=47.77  Aligned_cols=110  Identities=13%  Similarity=0.249  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEeccc
Q psy11646         18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIA   93 (433)
Q Consensus        18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~   93 (433)
                      ..+-++.++..+..++..+.+|+|+|.|...... ++   .+...-+|++++|-.+.+++-+.    ....+.|..-|+-
T Consensus        57 tteQv~nVLSll~~n~~GklvDlGSGDGRiVlaa-ar---~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkdlw  132 (199)
T KOG4058|consen   57 TTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAA-AR---CGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLW  132 (199)
T ss_pred             cHHHHHHHHHHccCCCCCcEEeccCCCceeehhh-hh---hCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhh
Confidence            3345566677777777789999999999987332 22   12246799999999999888766    3466778888876


Q ss_pred             CCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEE
Q psy11646         94 DQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL  139 (433)
Q Consensus        94 ~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll  139 (433)
                      ...+.     .|..|+.+.+-.-++|.+   ..+..-++.+..++.
T Consensus       133 K~dl~-----dy~~vviFgaes~m~dLe---~KL~~E~p~nt~vva  170 (199)
T KOG4058|consen  133 KVDLR-----DYRNVVIFGAESVMPDLE---DKLRTELPANTRVVA  170 (199)
T ss_pred             hcccc-----ccceEEEeehHHHHhhhH---HHHHhhCcCCCeEEE
Confidence            65443     355555555533333333   233334555655543

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=95.46  E-value=0.11  Score=54.54  Aligned_cols=121  Identities=15%  Similarity=0.221  Sum_probs=77.3

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCC--CcEEEEEeCCHHHHHHHHhhc---CCC-CeEEEEeccc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKS--VVKLVGLDVSPNMIKHAKNHH---TNP-KLEFVVANIA   93 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~--~~~v~gvDiS~~~l~~A~~~~---~~~-~i~~~~~Di~   93 (433)
                      .+.+.+++.+...+..+|.|-.||+|.+...... .+...  ...++|.|+++.....|+-+.   +.. .+....+|-.
T Consensus       173 ~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~-~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl  251 (489)
T COG0286         173 EVSELIVELLDPEPRNSIYDPACGSGGMLLQAAK-YLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTL  251 (489)
T ss_pred             HHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHH-HHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccc
Confidence            3444455555556777999999999998744433 22211  147999999999999999988   222 2344444443


Q ss_pred             CCcccc--cccCcEeEEEEccccc---chh----------------------hHHHHHHHHHHhccCCCEEEEEe
Q psy11646         94 DQNLES--IFLAKFNKIFSFYCLH---WVQ----------------------DQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        94 ~~~l~~--~~~~~fD~Vis~~~l~---~~~----------------------d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ..+...  ...+.||.|+++..+.   |..                      .....+..+...|+|||+..++.
T Consensus       252 ~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl  326 (489)
T COG0286         252 SNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL  326 (489)
T ss_pred             cCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence            333221  2347799999987664   111                      01456788888899888666554

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=95.46  E-value=0.023  Score=51.99  Aligned_cols=64  Identities=13%  Similarity=0.224  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc
Q psy11646         16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH   80 (433)
Q Consensus        16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~   80 (433)
                      +.+.++++.-+..+.-..+.++.|-+||+|.+. ..+.-+.+.....++|.|+++++++.|++++
T Consensus        34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLL-TVlGLLh~~~l~~v~aSDId~~aL~lA~kNL   97 (246)
T PF11599_consen   34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLL-TVLGLLHRRRLRRVYASDIDEDALELARKNL   97 (246)
T ss_dssp             HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHH-HHHHHHTGGGEEEEEEEES-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHH-HHHHHhhhHHHHhHhcccCCHHHHHHHHHhh
Confidence            456667776666665556779999999999987 4544444444458999999999999999987

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=94.85  E-value=0.049  Score=55.96  Aligned_cols=94  Identities=15%  Similarity=0.253  Sum_probs=57.6

Q ss_pred             CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHH----HHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEE
Q psy11646         35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPN----MIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFS  110 (433)
Q Consensus        35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~----~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis  110 (433)
                      ..|+|..+|.|.++ +.|..   .   .|+.+..-|.    -+...-.+    ++-=...|..+. ++ ..+.+||+|.+
T Consensus       367 RNVMDMnAg~GGFA-AAL~~---~---~VWVMNVVP~~~~ntL~vIydR----GLIG~yhDWCE~-fs-TYPRTYDLlHA  433 (506)
T PF03141_consen  367 RNVMDMNAGYGGFA-AALID---D---PVWVMNVVPVSGPNTLPVIYDR----GLIGVYHDWCEA-FS-TYPRTYDLLHA  433 (506)
T ss_pred             eeeeeecccccHHH-HHhcc---C---CceEEEecccCCCCcchhhhhc----ccchhccchhhc-cC-CCCcchhheeh
Confidence            46999999999999 44442   1   2444433332    12111111    111112233221 22 22388999999


Q ss_pred             cccccchh---hHHHHHHHHHHhccCCCEEEEEe
Q psy11646        111 FYCLHWVQ---DQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       111 ~~~l~~~~---d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ...+....   +.+.++-++-|+|||||.+++-+
T Consensus       434 ~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD  467 (506)
T PF03141_consen  434 DGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD  467 (506)
T ss_pred             hhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence            98887654   46788999999999999998854

; GO: 0008168 methyltransferase activity

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=94.81  E-value=0.13  Score=47.76  Aligned_cols=82  Identities=16%  Similarity=0.191  Sum_probs=54.2

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CC----CCeEEEEecccCCcccc--cccCcE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TN----PKLEFVVANIADQNLES--IFLAKF  105 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~----~~i~~~~~Di~~~~l~~--~~~~~f  105 (433)
                      ++.++||||.|.-+.- .++-..  .-+++.+|.|+++..++.|+... .+    ..++.....=.+.-++.  ...+.|
T Consensus        78 ~~i~~LDIGvGAnCIY-PliG~~--eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~y  154 (292)
T COG3129          78 KNIRILDIGVGANCIY-PLIGVH--EYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERY  154 (292)
T ss_pred             CceEEEeeccCccccc-ccccce--eecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccccccee
Confidence            5668999999987764 443321  22478999999999999999877 22    23444333222211222  224889


Q ss_pred             eEEEEcccccch
Q psy11646        106 NKIFSFYCLHWV  117 (433)
Q Consensus       106 D~Vis~~~l~~~  117 (433)
                      |.++|+..+|..
T Consensus       155 d~tlCNPPFh~s  166 (292)
T COG3129         155 DATLCNPPFHDS  166 (292)
T ss_pred             eeEecCCCcchh
Confidence            999999999954

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=94.78  E-value=0.021  Score=46.73  Aligned_cols=37  Identities=27%  Similarity=0.680  Sum_probs=30.0

Q ss_pred             cEeEEEEcccccchh------hHHHHHHHHHHhccCCCEEEEE
Q psy11646        104 KFNKIFSFYCLHWVQ------DQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       104 ~fD~Vis~~~l~~~~------d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +||+|+|..+.-|+.      ....+++.+++.|+|||.+++-
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE   43 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE   43 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence            489999999887763      2567899999999999998874

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=94.73  E-value=0.17  Score=49.98  Aligned_cols=99  Identities=15%  Similarity=0.162  Sum_probs=65.3

Q ss_pred             cCCCCCCEEEEECCC-CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeE
Q psy11646         29 FKWTDNESVLDVGCG-PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        29 l~~~~~~~VLDIGcG-~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      ...+||.+|+=+|+| .|..+..+++..   + .+|+++|.|++-++.|++.-   .-.++... .....+. ..+.||+
T Consensus       162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~---g-a~Via~~~~~~K~e~a~~lG---Ad~~i~~~-~~~~~~~-~~~~~d~  232 (339)
T COG1064         162 ANVKPGKWVAVVGAGGLGHMAVQYAKAM---G-AEVIAITRSEEKLELAKKLG---ADHVINSS-DSDALEA-VKEIADA  232 (339)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHc---C-CeEEEEeCChHHHHHHHHhC---CcEEEEcC-CchhhHH-hHhhCcE
Confidence            455789999999888 234443333322   2 59999999999999999873   22333322 1211221 1134999


Q ss_pred             EEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646        108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      |+..-. .      ..+....+.|++||++++....
T Consensus       233 ii~tv~-~------~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         233 IIDTVG-P------ATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             EEECCC-h------hhHHHHHHHHhcCCEEEEECCC
Confidence            988666 3      3567778999999999998654

>KOG2798|consensus

Probab=94.62  E-value=0.12  Score=49.95  Aligned_cols=38  Identities=21%  Similarity=0.493  Sum_probs=33.4

Q ss_pred             CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        103 AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +.||+|+.++.+....+.-..+..|.++|+|||+.+-.
T Consensus       258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNl  295 (369)
T KOG2798|consen  258 GSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINL  295 (369)
T ss_pred             CccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEec
Confidence            57999999988888888899999999999999987643

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=94.59  E-value=0.13  Score=52.16  Aligned_cols=108  Identities=18%  Similarity=0.225  Sum_probs=66.2

Q ss_pred             hcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccC-C--ccccc-cc
Q psy11646         28 QFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD-Q--NLESI-FL  102 (433)
Q Consensus        28 ~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~-~--~l~~~-~~  102 (433)
                      .....++.+||.+|||. |..+..++. ..+.  .+++++|.+++.++.+++...   ..++...-.+ .  .+... ..
T Consensus       179 ~~~~~~g~~VlV~g~G~vG~~~~~la~-~~g~--~~vi~~~~~~~~~~~~~~~~~---~~vi~~~~~~~~~~~l~~~~~~  252 (386)
T cd08283         179 LAEVKPGDTVAVWGCGPVGLFAARSAK-LLGA--ERVIAIDRVPERLEMARSHLG---AETINFEEVDDVVEALRELTGG  252 (386)
T ss_pred             hccCCCCCEEEEECCCHHHHHHHHHHH-HcCC--CEEEEEcCCHHHHHHHHHcCC---cEEEcCCcchHHHHHHHHHcCC
Confidence            34456788999999887 666644433 3322  369999999999999988632   2222111110 0  01111 11


Q ss_pred             CcEeEEEEcccc---------------cchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        103 AKFNKIFSFYCL---------------HWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       103 ~~fD~Vis~~~l---------------~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ..+|+|+-.-.-               +...+....+.++.+.++++|++++..
T Consensus       253 ~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         253 RGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             CCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            368988875321               111344667889999999999998763

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG2539|consensus

Probab=94.28  E-value=0.13  Score=52.32  Aligned_cols=113  Identities=14%  Similarity=0.070  Sum_probs=71.0

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC--CCeEEEEec--ccCCcccccccCcEeEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN--PKLEFVVAN--IADQNLESIFLAKFNKI  108 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~--~~i~~~~~D--i~~~~l~~~~~~~fD~V  108 (433)
                      ..+.+.|+|.|.|.-. .++...++.....++.||.|..|.........+  ..-....-.  .....++......||+|
T Consensus       200 ~pd~~~dfgsg~~~~~-~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv  278 (491)
T KOG2539|consen  200 RPDLLRDFGSGAGNGG-WAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV  278 (491)
T ss_pred             ChHHHHHHHhhcccch-hhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence            4667899998888765 444444444335799999999999998887621  111111111  11111222233669999


Q ss_pred             EEcccccchhhH---HHHHH-HHHHhccCCCEEEEEeccCCc
Q psy11646        109 FSFYCLHWVQDQ---RQAIS-NIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       109 is~~~l~~~~d~---~~~l~-~i~~~LkpGG~lll~~~~~~p  146 (433)
                      ++.+.+++..+.   ..+.+ -.++..++||.+++...+..-
T Consensus       279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~  320 (491)
T KOG2539|consen  279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTM  320 (491)
T ss_pred             EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCcc
Confidence            999999988653   23333 345567899999998765443

>KOG0024|consensus

Probab=94.07  E-value=0.31  Score=47.49  Aligned_cols=110  Identities=16%  Similarity=0.144  Sum_probs=70.5

Q ss_pred             HhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEec--ccC--Ccccc-cc
Q psy11646         27 DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVAN--IAD--QNLES-IF  101 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~D--i~~--~~l~~-~~  101 (433)
                      .+-..++|.+||=+|+|+=.+..-+.++....  .+|+.+|+++..++.|++ ++...+......  +..  ..... ..
T Consensus       163 r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA--~~VVi~d~~~~Rle~Ak~-~Ga~~~~~~~~~~~~~~~~~~v~~~~g  239 (354)
T KOG0024|consen  163 RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGA--SDVVITDLVANRLELAKK-FGATVTDPSSHKSSPQELAELVEKALG  239 (354)
T ss_pred             hhcCcccCCeEEEECCcHHHHHHHHHHHHcCC--CcEEEeecCHHHHHHHHH-hCCeEEeeccccccHHHHHHHHHhhcc
Confidence            34445789999999999866654555655544  499999999999999999 532222211110  000  00111 11


Q ss_pred             cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646        102 LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus       102 ~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      ...+|+.+....++      ..++.....+++||.++++..+..
T Consensus       240 ~~~~d~~~dCsG~~------~~~~aai~a~r~gGt~vlvg~g~~  277 (354)
T KOG0024|consen  240 KKQPDVTFDCSGAE------VTIRAAIKATRSGGTVVLVGMGAE  277 (354)
T ss_pred             ccCCCeEEEccCch------HHHHHHHHHhccCCEEEEeccCCC
Confidence            24588888776654      345666789999999888765544

>TIGR00438 rrmJ cell division protein FtsJ

Probab=93.92  E-value=0.17  Score=45.70  Aligned_cols=113  Identities=16%  Similarity=0.219  Sum_probs=77.5

Q ss_pred             CCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc-----ccccCc
Q psy11646         30 KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE-----SIFLAK  104 (433)
Q Consensus        30 ~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~-----~~~~~~  104 (433)
                      ..+++.+|||+|||+|.++..+++...+.  .+++++|+|+.+      .  ..++++.++|+.+....     ....++
T Consensus        29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~--~~v~~vDis~~~------~--~~~i~~~~~d~~~~~~~~~l~~~~~~~~   98 (188)
T TIGR00438        29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGK--GRVIAVDLQPMK------P--IENVDFIRGDFTDEEVLNKIRERVGDDK   98 (188)
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHHhCCC--ceEEEEeccccc------c--CCCceEEEeeCCChhHHHHHHHHhCCCC
Confidence            34689999999999999984444433233  389999999865      1  14688888998764311     122367


Q ss_pred             EeEEEEcccc--------cch---hhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHH
Q psy11646        105 FNKIFSFYCL--------HWV---QDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYE  152 (433)
Q Consensus       105 fD~Vis~~~l--------~~~---~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~  152 (433)
                      ||+|++..+.        ++.   .+.+.++.++.++|+|||++++.........+.+.
T Consensus        99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~  157 (188)
T TIGR00438        99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLN  157 (188)
T ss_pred             ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHH
Confidence            9999986432        222   12467899999999999999986544444444443

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=93.90  E-value=1.1  Score=41.49  Aligned_cols=108  Identities=14%  Similarity=0.113  Sum_probs=70.1

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcc
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNL   97 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l   97 (433)
                      |..+++.+  +.+.++.||||--|.+...++.. .+.  ..+++.|+++..++.|.+++    ...+++...+|-... +
T Consensus         7 L~~va~~V--~~~~~iaDIGsDHAYLp~~Lv~~-~~~--~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~-l   80 (226)
T COG2384           7 LTTVANLV--KQGARIADIGSDHAYLPIYLVKN-NPA--STAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAV-L   80 (226)
T ss_pred             HHHHHHHH--HcCCceeeccCchhHhHHHHHhc-CCc--ceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccc-c
Confidence            44555554  34667999999999999555543 222  48999999999999999988    235677777775221 2


Q ss_pred             cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEE
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL  139 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll  139 (433)
                      .  .+..+|.|+..++=-.  -....+.+-.+.|+.=-++++
T Consensus        81 ~--~~d~~d~ivIAGMGG~--lI~~ILee~~~~l~~~~rlIL  118 (226)
T COG2384          81 E--LEDEIDVIVIAGMGGT--LIREILEEGKEKLKGVERLIL  118 (226)
T ss_pred             C--ccCCcCEEEEeCCcHH--HHHHHHHHhhhhhcCcceEEE
Confidence            2  2347898887665221  234455666666653334554

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=93.60  E-value=0.45  Score=48.11  Aligned_cols=101  Identities=16%  Similarity=0.101  Sum_probs=69.7

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CC-CeEEEEecccCCcccccccCcEeE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NP-KLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~-~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      .+.+|||.=+|+|-=+.+++...-  +..+|+.-|+|+.+++..+++.   + .. .+++...|+... +. .....||+
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~--~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~l-l~-~~~~~fD~  124 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELA--GVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVL-LY-SRQERFDV  124 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-S--SECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHH-HC-HSTT-EEE
T ss_pred             CCceEEeccccccHHHHHHHHHcC--CCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHH-hh-hccccCCE
Confidence            456899999999998878876532  2258999999999999999997   2 22 578888887664 21 12378999


Q ss_pred             EEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |=.-.    ...+...+....+.++.||.+.++.
T Consensus       125 IDlDP----fGSp~pfldsA~~~v~~gGll~vTa  154 (377)
T PF02005_consen  125 IDLDP----FGSPAPFLDSALQAVKDGGLLCVTA  154 (377)
T ss_dssp             EEE------SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeCC----CCCccHhHHHHHHHhhcCCEEEEec
Confidence            85421    1345678888999999999999874

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=93.43  E-value=0.39  Score=45.69  Aligned_cols=77  Identities=10%  Similarity=0.186  Sum_probs=48.9

Q ss_pred             CCEEEEECCCCChhHHHHhcccCCC-----CCcEEEEEeCCHHHHHHHHhhcCC---------CCeEEEEecccCCcccc
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLPK-----SVVKLVGLDVSPNMIKHAKNHHTN---------PKLEFVVANIADQNLES   99 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~~-----~~~~v~gvDiS~~~l~~A~~~~~~---------~~i~~~~~Di~~~~l~~   99 (433)
                      ..+|+|+|+|+|.++..+|......     ...+|+.+|+|+.+.+.-++++..         .++.+ ..++...+   
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p---   94 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP---   94 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence            4799999999999997776644322     125899999999999888888722         23444 22332211   


Q ss_pred             cccCcEeEEEEcccccchh
Q psy11646        100 IFLAKFNKIFSFYCLHWVQ  118 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~  118 (433)
                          ..-+|+++..+..++
T Consensus        95 ----~~~~iiaNE~~DAlP  109 (252)
T PF02636_consen   95 ----FPGFIIANELFDALP  109 (252)
T ss_dssp             ----CCEEEEEESSGGGS-
T ss_pred             ----CCEEEEEeeehhcCc
Confidence                345777877776654

; PDB: 4F3N_A 1ZKD_B.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=93.41  E-value=0.22  Score=45.90  Aligned_cols=54  Identities=20%  Similarity=0.316  Sum_probs=38.5

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHh
Q psy11646         19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN   78 (433)
Q Consensus        19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~   78 (433)
                      ..+++.++.... .+|+.|||.=||+|+.+.....  +.   -+++|+|+++..++.|++
T Consensus       178 ~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~--l~---R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  178 VELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEE--LG---RRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHH--TT----EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHHhhh-ccceeeehhhhccChHHHHHHH--cC---CeEEEEeCCHHHHHHhcC
Confidence            466777776653 6799999999999998733322  22   389999999999999875

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK11524 putative methyltransferase; Provisional

Probab=93.40  E-value=0.21  Score=48.49  Aligned_cols=56  Identities=20%  Similarity=0.207  Sum_probs=44.5

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc
Q psy11646         19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH   80 (433)
Q Consensus        19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~   80 (433)
                      ..+++.++.... .+|+.|||-=||+|+.+ .++. .+.   -+++|+|++++.++.|++++
T Consensus       195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~-~AA~-~lg---R~~IG~Ei~~~Y~~~a~~Rl  250 (284)
T PRK11524        195 EALLKRIILASS-NPGDIVLDPFAGSFTTG-AVAK-ASG---RKFIGIEINSEYIKMGLRRL  250 (284)
T ss_pred             HHHHHHHHHHhC-CCCCEEEECCCCCcHHH-HHHH-HcC---CCEEEEeCCHHHHHHHHHHH
Confidence            467777777664 68999999999999987 3333 222   38999999999999999996

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=93.40  E-value=0.42  Score=47.90  Aligned_cols=104  Identities=19%  Similarity=0.163  Sum_probs=66.9

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEec-ccCCcccccccCcEeEEEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVAN-IADQNLESIFLAKFNKIFS  110 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~D-i~~~~l~~~~~~~fD~Vis  110 (433)
                      .++.+|+=+|||+=.+....+++..+.  .+++.+|.++.-++.|++......+.....+ .............+|+++-
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga--~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie  244 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGA--SVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIE  244 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEE
Confidence            445599999999866654555555444  4999999999999999986522211111111 0000000001136999987


Q ss_pred             cccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646        111 FYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       111 ~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      .-.      ...++..+.++++|||.+.+....
T Consensus       245 ~~G------~~~~~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         245 AVG------SPPALDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             CCC------CHHHHHHHHHHhcCCCEEEEEecc
Confidence            666      234788899999999999987544

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.05  E-value=0.047  Score=47.41  Aligned_cols=53  Identities=17%  Similarity=0.282  Sum_probs=42.6

Q ss_pred             cccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEeccCCchhhHHH
Q psy11646        100 IFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYE  152 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~  152 (433)
                      +.+++.|+|.+-++++|+.  .-..+++++++.|||||.+-++.+...-....|+
T Consensus        43 F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~   97 (185)
T COG4627          43 FEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQ   97 (185)
T ss_pred             CCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHh
Confidence            3348999999999999985  4567899999999999999999877655444443

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=92.74  E-value=1.5  Score=41.27  Aligned_cols=109  Identities=17%  Similarity=0.197  Sum_probs=68.8

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCC-cEEEEEeCCHHHHHHHHhhc--CCCC--eEEEEecccCCcccccccCc-E
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSV-VKLVGLDVSPNMIKHAKNHH--TNPK--LEFVVANIADQNLESIFLAK-F  105 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~-~~v~gvDiS~~~l~~A~~~~--~~~~--i~~~~~Di~~~~l~~~~~~~-f  105 (433)
                      ..+...+|+|+|+..-+..++....+.+. .+++.+|+|...++...+..  ..+.  +.-+++|.+.. +....... =
T Consensus        77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~-La~~~~~~~R  155 (321)
T COG4301          77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELA-LAELPRGGRR  155 (321)
T ss_pred             hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHH-HhcccCCCeE
Confidence            34778999999999998555554443332 58999999999987755544  2333  44455665432 22222122 2


Q ss_pred             eEEEEcccccch--hhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        106 NKIFSFYCLHWV--QDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       106 D~Vis~~~l~~~--~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      =.++....+-.+  .+...++..+...|+||-.+++..
T Consensus       156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv  193 (321)
T COG4301         156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV  193 (321)
T ss_pred             EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence            223333344433  345678999999999999988864

>KOG1562|consensus

Probab=92.68  E-value=0.56  Score=45.17  Aligned_cols=107  Identities=21%  Similarity=0.210  Sum_probs=74.6

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-------CCCCeEEEEecccCCcccccccC
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-------TNPKLEFVVANIADQNLESIFLA  103 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-------~~~~i~~~~~Di~~~~l~~~~~~  103 (433)
                      +...++||=||-|.|.+.+..+. .  .....++-+|+....++..++-+       ..+++.+..+|-... +.....+
T Consensus       119 ~~npkkvlVVgggDggvlrevik-H--~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~f-l~~~~~~  194 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIK-H--KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLF-LEDLKEN  194 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeec-c--ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHH-HHHhccC
Confidence            34578999999999999844443 3  23358999999998888887765       357888888875432 2222348


Q ss_pred             cEeEEEEcc--cccchhh--HHHHHHHHHHhccCCCEEEEEe
Q psy11646        104 KFNKIFSFY--CLHWVQD--QRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       104 ~fD~Vis~~--~l~~~~d--~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .||+|+.--  ..--...  .+..+..+.+.||+||+++...
T Consensus       195 ~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  195 PFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             CceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence            899998632  1111111  3567888999999999988764

>PHA01634 hypothetical protein

Probab=92.61  E-value=0.58  Score=39.41  Aligned_cols=44  Identities=16%  Similarity=0.168  Sum_probs=37.0

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH   80 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~   80 (433)
                      .+.+|+|||++-|..+.-++.    .+...|++++.++...+..+++.
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l----~GAK~Vva~E~~~kl~k~~een~   71 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLL----RGASFVVQYEKEEKLRKKWEEVC   71 (156)
T ss_pred             cCCEEEEecCCccchhhHHhh----cCccEEEEeccCHHHHHHHHHHh
Confidence            588999999999998855554    34468999999999999998876

>KOG2920|consensus

Probab=92.33  E-value=0.093  Score=50.18  Aligned_cols=103  Identities=14%  Similarity=0.168  Sum_probs=59.6

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-------C---CCCeE---EEEecccCCccc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-------T---NPKLE---FVVANIADQNLE   98 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-------~---~~~i~---~~~~Di~~~~l~   98 (433)
                      ..+.+|||+|||+|--...+..    .+...+...|.+...++.-.--.       .   ...-.   ....+..+..+ 
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~----~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~-  189 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFV----KGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVF-  189 (282)
T ss_pred             ecCceeEecCCcccccchhhhh----hccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchh-
Confidence            4689999999999987644333    22247788888877663211000       0   00000   11110001000 


Q ss_pred             ccccC--cEeEEEEcccccchhhHHHH-HHHHHHhccCCCEEEEE
Q psy11646         99 SIFLA--KFNKIFSFYCLHWVQDQRQA-ISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        99 ~~~~~--~fD~Vis~~~l~~~~d~~~~-l~~i~~~LkpGG~lll~  140 (433)
                       ...+  .||+|.+...++........ ......+++++|.++++
T Consensus       190 -~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a  233 (282)
T KOG2920|consen  190 -NHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA  233 (282)
T ss_pred             -hhccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence             0113  78999998888877666655 66667788889987764

>KOG0822|consensus

Probab=92.25  E-value=0.37  Score=49.85  Aligned_cols=103  Identities=17%  Similarity=0.222  Sum_probs=72.5

Q ss_pred             CCEEEEECCCCChhHHHHhcccCC-CCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLP-KSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~-~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      ...|+-+|+|-|-+....++.... ..-.++++++-+|.++...+.+-   ...+++++..|+...+.+   .++.|+++
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap---~eq~DI~V  444 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAP---REQADIIV  444 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCc---hhhccchH
Confidence            446889999999887555543211 12258999999999988776643   567899999999987643   26789888


Q ss_pred             Ec--ccccchhhHHHHHHHHHHhccCCCEEEE
Q psy11646        110 SF--YCLHWVQDQRQAISNIYNLLMPGGEVLL  139 (433)
Q Consensus       110 s~--~~l~~~~d~~~~l~~i~~~LkpGG~lll  139 (433)
                      +-  +.+..-+--...+.-+.+.|||+|..+=
T Consensus       445 SELLGSFGDNELSPECLDG~q~fLkpdgIsIP  476 (649)
T KOG0822|consen  445 SELLGSFGDNELSPECLDGAQKFLKPDGISIP  476 (649)
T ss_pred             HHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence            62  2222212235678888999999987654

>KOG3924|consensus

Probab=91.97  E-value=0.46  Score=47.47  Aligned_cols=126  Identities=14%  Similarity=0.143  Sum_probs=81.1

Q ss_pred             hhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----------
Q psy11646         11 NSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----------   80 (433)
Q Consensus        11 ~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----------   80 (433)
                      +..........+..+.+.+...+++...|+|+|-|... .+++.....  ..-+|+++....-+.|..+.          
T Consensus       170 s~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv-~~~aa~a~~--k~svG~eim~~pS~~a~~~~~~~kk~~k~f  246 (419)
T KOG3924|consen  170 SETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLV-CFVAAYAGC--KKSVGFEIMDKPSQCAELNKEEFKKLMKHF  246 (419)
T ss_pred             ccchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhh-HHHHHhhcc--ccccceeeecCcHHHHHHHHHHHHHHHHHh
Confidence            33444455566677888888899999999999999987 444433222  35577776554444333221          


Q ss_pred             C--CCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646         81 T--NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        81 ~--~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +  ...++.++++......-.......++|+++++....+. ..-+.++..-+++|-+++-.
T Consensus       247 Gk~~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L-~lr~~eil~~ck~gtrIiS~  307 (419)
T KOG3924|consen  247 GKKPNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFDPEL-KLRSKEILQKCKDGTRIISS  307 (419)
T ss_pred             CCCcCceeecccccCCHHHHHHHhhcceEEEEecccCCHHH-HHhhHHHHhhCCCcceEecc
Confidence            1  24567777777654333334467899999988765433 33345888899999987743

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=91.90  E-value=0.68  Score=45.10  Aligned_cols=107  Identities=12%  Similarity=0.210  Sum_probs=68.1

Q ss_pred             CEEEEECCCCChhHHHHhcccC--------C----------CCCcEEEEEeCCHH--HHHHHHhhc--------------
Q psy11646         35 ESVLDVGCGPGNVTSKLLLPNL--------P----------KSVVKLVGLDVSPN--MIKHAKNHH--------------   80 (433)
Q Consensus        35 ~~VLDIGcG~G~~~~~~l~~~~--------~----------~~~~~v~gvDiS~~--~l~~A~~~~--------------   80 (433)
                      .+||.||.|.|.-...+ +..+        +          .....++.+||.+-  .+.......              
T Consensus        88 ~~VlCIGGGAGAElVAl-Aa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~  166 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVAL-AAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN  166 (315)
T ss_pred             ceEEEECCChHHHHHHH-HHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence            69999999998654233 2222        1          01148999999653  233222222              


Q ss_pred             ------CCCCeEEEEecccCCccccc---cc-CcEeEEEEcccccch-----hhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         81 ------TNPKLEFVVANIADQNLESI---FL-AKFNKIFSFYCLHWV-----QDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        81 ------~~~~i~~~~~Di~~~~l~~~---~~-~~fD~Vis~~~l~~~-----~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                            ..-++.|.+.|+.....++.   .. ...++|...++++.+     ...-+++.++-..++||-.+++++.
T Consensus       167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS  243 (315)
T PF11312_consen  167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS  243 (315)
T ss_pred             cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence                  11257899999877644321   11 257888888877644     3345678999999999999988763

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=91.71  E-value=0.3  Score=42.81  Aligned_cols=101  Identities=20%  Similarity=0.238  Sum_probs=61.4

Q ss_pred             CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHH-HHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcc
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKH-AKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFY  112 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~-A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~  112 (433)
                      +++.+=+|+..-+.-...++    .+..++..++.++--++. .+.+.    .++...|.... . ....++||.+.|..
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~----~GA~~iltveyn~L~i~~~~~dr~----ssi~p~df~~~-~-~~y~~~fD~~as~~   71 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQ----HGAAKILTVEYNKLEIQEEFRDRL----SSILPVDFAKN-W-QKYAGSFDFAASFS   71 (177)
T ss_pred             CceEEEEecCCchhhHHHHH----cCCceEEEEeecccccCccccccc----ccccHHHHHHH-H-HHhhccchhhheec
Confidence            56788898887766533333    344578888876421110 11110    11111222111 1 01237899999999


Q ss_pred             cccchh-----h------HHHHHHHHHHhccCCCEEEEEeccC
Q psy11646        113 CLHWVQ-----D------QRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       113 ~l~~~~-----d------~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      +++|..     |      ...++.++.++|||||.+++..+..
T Consensus        72 siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG  114 (177)
T PF03269_consen   72 SIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG  114 (177)
T ss_pred             hhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence            998872     2      3568899999999999999987654

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=91.36  E-value=0.31  Score=39.73  Aligned_cols=32  Identities=25%  Similarity=0.481  Sum_probs=23.2

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCC
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVS   69 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS   69 (433)
                      +....+|||||.|-+. .+|..   .| ..=.|+|.-
T Consensus        58 ~~~~FVDlGCGNGLLV-~IL~~---EG-y~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLV-YILNS---EG-YPGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHH-HHHHh---CC-CCccccccc
Confidence            5668999999999998 66653   23 345788753

; GO: 0008168 methyltransferase activity

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=91.26  E-value=1.4  Score=46.24  Aligned_cols=103  Identities=13%  Similarity=0.202  Sum_probs=66.6

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc---------cccc--
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN---------LESI--  100 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~---------l~~~--  100 (433)
                      .++.+|+=+|||.=.......++..  + .+|+++|.+++.++.+++.    +.++...+..+..         ....  
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~l--G-A~V~a~D~~~~rle~aesl----GA~~v~i~~~e~~~~~~gya~~~s~~~~  235 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSL--G-AIVRAFDTRPEVAEQVESM----GAEFLELDFEEEGGSGDGYAKVMSEEFI  235 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHC--C-CEEEEEeCCHHHHHHHHHc----CCeEEEeccccccccccchhhhcchhHH
Confidence            4789999999998666533444332  2 4899999999999999874    3333333221100         0000  


Q ss_pred             -------c--cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        101 -------F--LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       101 -------~--~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                             .  ...+|+|+..-....-+.+....++..+.+||||.++...
T Consensus       236 ~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg  285 (509)
T PRK09424        236 KAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA  285 (509)
T ss_pred             HHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence                   0  1358999987765433334334589999999999988764

>PRK13699 putative methylase; Provisional

Probab=90.92  E-value=0.71  Score=43.28  Aligned_cols=55  Identities=20%  Similarity=0.317  Sum_probs=42.4

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH   80 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~   80 (433)
                      .+++.++.... .+|+.|||-=||+|+.+. .+.. .  + .+++|+|+++...+.|.+++
T Consensus       151 ~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~-aa~~-~--~-r~~~g~e~~~~y~~~~~~r~  205 (227)
T PRK13699        151 TSLQPLIESFT-HPNAIVLDPFAGSGSTCV-AALQ-S--G-RRYIGIELLEQYHRAGQQRL  205 (227)
T ss_pred             HHHHHHHHHhC-CCCCEEEeCCCCCCHHHH-HHHH-c--C-CCEEEEecCHHHHHHHHHHH
Confidence            56666666544 579999999999999873 3332 1  2 47999999999999999887

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=90.89  E-value=0.43  Score=44.73  Aligned_cols=85  Identities=18%  Similarity=0.201  Sum_probs=47.1

Q ss_pred             HHHhcCCCCC--CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc------CC------CCeEEEEe
Q psy11646         25 YIDQFKWTDN--ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH------TN------PKLEFVVA   90 (433)
Q Consensus        25 l~~~l~~~~~--~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~------~~------~~i~~~~~   90 (433)
                      +++....+++  .+|||.-+|-|..+ .+++..   | .+|++++-||-+....+.-+      ..      .+++++.+
T Consensus        65 l~kA~Glk~~~~~~VLDaTaGLG~Da-~vlA~~---G-~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~  139 (234)
T PF04445_consen   65 LAKAVGLKPGMRPSVLDATAGLGRDA-FVLASL---G-CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG  139 (234)
T ss_dssp             HHHHTT-BTTB---EEETT-TTSHHH-HHHHHH---T---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred             HHHHhCCCCCCCCEEEECCCcchHHH-HHHHcc---C-CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence            4444555554  48999999999998 455532   2 48999999997765544322      11      37899999


Q ss_pred             cccCCcccccccCcEeEEEEcccccc
Q psy11646         91 NIADQNLESIFLAKFNKIFSFYCLHW  116 (433)
Q Consensus        91 Di~~~~l~~~~~~~fD~Vis~~~l~~  116 (433)
                      |..+. +. ....+||+|..-.++.+
T Consensus       140 d~~~~-L~-~~~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  140 DALEY-LR-QPDNSFDVVYFDPMFPE  163 (234)
T ss_dssp             -CCCH-CC-CHSS--SEEEE--S---
T ss_pred             CHHHH-Hh-hcCCCCCEEEECCCCCC
Confidence            98764 33 34589999999777765

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=90.47  E-value=1  Score=44.66  Aligned_cols=57  Identities=18%  Similarity=0.336  Sum_probs=42.0

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhccc---CCC--CCcEEEEEeCCHHHHHHHHhhc
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPN---LPK--SVVKLVGLDVSPNMIKHAKNHH   80 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~---~~~--~~~~v~gvDiS~~~l~~A~~~~   80 (433)
                      +....+..+....++|+|+|.|.+...+|+..   .|.  ...++..+++|+...+.-++++
T Consensus        68 ~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L  129 (370)
T COG1565          68 QLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETL  129 (370)
T ss_pred             HHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHH
Confidence            34455555557789999999999987776644   221  1258999999999988877776

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=90.44  E-value=0.93  Score=43.77  Aligned_cols=72  Identities=8%  Similarity=0.139  Sum_probs=51.2

Q ss_pred             EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEccccc
Q psy11646         36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLH  115 (433)
Q Consensus        36 ~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~  115 (433)
                      +|+|+-||.|..+..+ ..   .+...+.++|+++.+++..+.++.  .. ....|+.+....+. ...+|+++......
T Consensus         2 ~v~dLFsG~Gg~~~gl-~~---~G~~~v~a~e~~~~a~~~~~~N~~--~~-~~~~Di~~~~~~~~-~~~~D~l~~gpPCq   73 (275)
T cd00315           2 RVIDLFAGIGGFRLGL-EK---AGFEIVAANEIDKSAAETYEANFP--NK-LIEGDITKIDEKDF-IPDIDLLTGGFPCQ   73 (275)
T ss_pred             cEEEEccCcchHHHHH-HH---cCCEEEEEEeCCHHHHHHHHHhCC--CC-CccCccccCchhhc-CCCCCEEEeCCCCh
Confidence            6999999999997433 32   233468999999999999999872  22 56678776432211 35699999877654

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=89.87  E-value=2.1  Score=44.39  Aligned_cols=92  Identities=23%  Similarity=0.227  Sum_probs=57.9

Q ss_pred             CceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCc-----------hhHHHHHHHHHHHHHHHHHhccCCCe
Q psy11646        176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHD-----------LDEHLQGLLLIGALNITTFLLKPGGT  244 (433)
Q Consensus       176 gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~-----------~D~~~~~~L~~~al~ia~~~L~~gG~  244 (433)
                      .+..+++|.....      ..+. ..+|+|++|......|...           .+......+....+..+..+|+|||.
T Consensus       302 ~v~~~~~D~~~~~------~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~  374 (444)
T PRK14902        302 NIETKALDARKVH------EKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGI  374 (444)
T ss_pred             eEEEEeCCccccc------chhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence            4566777765421      1122 5699999996433233211           12223344566778889999999999


Q ss_pred             EE---EEEeecCCHHHHHHHHhc--ccceeEEecC
Q psy11646        245 FV---GKIFRSRNVVCLETKFQI--FFENVSIAKP  274 (433)
Q Consensus       245 fv---~Kif~g~~~~~~~~~l~~--~F~~v~~~KP  274 (433)
                      +|   |+++...+...+...++.  .|+.+.+.+|
T Consensus       375 lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~  409 (444)
T PRK14902        375 LVYSTCTIEKEENEEVIEAFLEEHPEFELVPLQHE  409 (444)
T ss_pred             EEEEcCCCChhhhHHHHHHHHHhCCCcEEeccccc
Confidence            99   788888877766666665  3666555544

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=89.74  E-value=2  Score=42.72  Aligned_cols=129  Identities=16%  Similarity=0.185  Sum_probs=80.4

Q ss_pred             hhhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--C-
Q psy11646          5 TLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--T-   81 (433)
Q Consensus         5 ~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~-   81 (433)
                      -.|+..-...|...-..+..+.+..    ..+|||-=+|+|.=+++++...   +..+++.-|+||.+++.++++.  . 
T Consensus        28 VFYNP~m~~NRDlsV~~l~~~~~~~----~~~v~DalsatGiRgIRya~E~---~~~~v~lNDisp~Avelik~Nv~~N~  100 (380)
T COG1867          28 VFYNPAMEFNRDLSVLVLKAFGKLL----PKRVLDALSATGIRGIRYAVET---GVVKVVLNDISPKAVELIKENVRLNS  100 (380)
T ss_pred             ceeCchhhhccchhHHHHHHhhccC----CeEEeecccccchhHhhhhhhc---CccEEEEccCCHHHHHHHHHHHHhcC
Confidence            3444444444444444444433222    6789999999998887776532   2138999999999999999998  2 


Q ss_pred             CCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646         82 NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus        82 ~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      .........|+... +.+ ....||+|=.    .-...+...+....+..+.||.+.++.-...+
T Consensus       101 ~~~~~v~n~DAN~l-m~~-~~~~fd~IDi----DPFGSPaPFlDaA~~s~~~~G~l~vTATD~a~  159 (380)
T COG1867         101 GEDAEVINKDANAL-LHE-LHRAFDVIDI----DPFGSPAPFLDAALRSVRRGGLLCVTATDTAP  159 (380)
T ss_pred             cccceeecchHHHH-HHh-cCCCccEEec----CCCCCCchHHHHHHHHhhcCCEEEEEeccccc
Confidence            23444444565543 221 1256777633    11224556777778888889999887533333

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=89.64  E-value=4.1  Score=39.72  Aligned_cols=98  Identities=18%  Similarity=0.316  Sum_probs=59.2

Q ss_pred             CCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc---ccccccCcE
Q psy11646         30 KWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN---LESIFLAKF  105 (433)
Q Consensus        30 ~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~---l~~~~~~~f  105 (433)
                      ...++.+||..|+|. |..+..++. .  .+ .++++++.++...+.+++. +   +.....+-....   ........+
T Consensus       162 ~~~~~~~vli~g~g~vG~~~~~la~-~--~G-~~V~~~~~s~~~~~~~~~~-g---~~~~~~~~~~~~~~~~~~~~~~~~  233 (338)
T cd08254         162 EVKPGETVLVIGLGGLGLNAVQIAK-A--MG-AAVIAVDIKEEKLELAKEL-G---ADEVLNSLDDSPKDKKAAGLGGGF  233 (338)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHH-H--cC-CEEEEEcCCHHHHHHHHHh-C---CCEEEcCCCcCHHHHHHHhcCCCc
Confidence            356788999987653 455433333 2  22 5799999999999888653 1   222211111110   001123568


Q ss_pred             eEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        106 NKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       106 D~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |+|+.+...      ...++.+.+.|+++|.++...
T Consensus       234 D~vid~~g~------~~~~~~~~~~l~~~G~~v~~g  263 (338)
T cd08254         234 DVIFDFVGT------QPTFEDAQKAVKPGGRIVVVG  263 (338)
T ss_pred             eEEEECCCC------HHHHHHHHHHhhcCCEEEEEC
Confidence            998865331      346778899999999988753

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=89.55  E-value=2  Score=42.58  Aligned_cols=98  Identities=16%  Similarity=0.198  Sum_probs=57.8

Q ss_pred             cCCCCCCEEEEECCCCChhHH--HHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc--cccCc
Q psy11646         29 FKWTDNESVLDVGCGPGNVTS--KLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES--IFLAK  104 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~G~~~~--~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~--~~~~~  104 (433)
                      ....++.+||=.|||  ..+.  ..+++..  +..+++++|.+++.++.|++. +..  .+  .|..+..+..  ...+.
T Consensus       165 ~~~~~g~~VlV~G~G--~vG~~aiqlak~~--G~~~Vi~~~~~~~~~~~a~~l-Ga~--~v--i~~~~~~~~~~~~~~g~  235 (343)
T PRK09880        165 AGDLQGKRVFVSGVG--PIGCLIVAAVKTL--GAAEIVCADVSPRSLSLAREM-GAD--KL--VNPQNDDLDHYKAEKGY  235 (343)
T ss_pred             cCCCCCCEEEEECCC--HHHHHHHHHHHHc--CCcEEEEEeCCHHHHHHHHHc-CCc--EE--ecCCcccHHHHhccCCC
Confidence            334578899988875  3331  2233322  323799999999999999874 211  11  1211111111  01135


Q ss_pred             EeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        105 FNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       105 fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +|+|+-.-.-      ...+....+.|++||++++..
T Consensus       236 ~D~vid~~G~------~~~~~~~~~~l~~~G~iv~~G  266 (343)
T PRK09880        236 FDVSFEVSGH------PSSINTCLEVTRAKGVMVQVG  266 (343)
T ss_pred             CCEEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence            8988765431      235677888999999988764

>PTZ00146 fibrillarin; Provisional

Probab=89.39  E-value=10  Score=36.90  Aligned_cols=81  Identities=16%  Similarity=0.172  Sum_probs=46.5

Q ss_pred             cCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEe----
Q psy11646        175 TGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIF----  250 (433)
Q Consensus       175 ~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif----  250 (433)
                      +++..+.+|...+....   ...  ..+|+|++|++.       .|+...      .+.-+.++|++||.|++++-    
T Consensus       181 ~NI~~I~~Da~~p~~y~---~~~--~~vDvV~~Dva~-------pdq~~i------l~~na~r~LKpGG~~vI~ika~~i  242 (293)
T PTZ00146        181 PNIVPIIEDARYPQKYR---MLV--PMVDVIFADVAQ-------PDQARI------VALNAQYFLKNGGHFIISIKANCI  242 (293)
T ss_pred             CCCEEEECCccChhhhh---ccc--CCCCEEEEeCCC-------cchHHH------HHHHHHHhccCCCEEEEEEecccc
Confidence            56777888876532211   111  269999999962       222211      11227788999999999632    


Q ss_pred             -ecCCHHHH----HHHHhcc-cceeEEec
Q psy11646        251 -RSRNVVCL----ETKFQIF-FENVSIAK  273 (433)
Q Consensus       251 -~g~~~~~~----~~~l~~~-F~~v~~~K  273 (433)
                       .+...+..    ...|+.. |+.+....
T Consensus       243 d~g~~pe~~f~~ev~~L~~~GF~~~e~v~  271 (293)
T PTZ00146        243 DSTAKPEVVFASEVQKLKKEGLKPKEQLT  271 (293)
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCceEEEEe
Confidence             33333333    2445543 77666654

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=86.93  E-value=11  Score=37.41  Aligned_cols=178  Identities=14%  Similarity=0.194  Sum_probs=99.5

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEe----cccCCcccc
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVA----NIADQNLES   99 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~----Di~~~~l~~   99 (433)
                      ...+..+.++|.+|.=+|||.=.++...-+...  +..+++++|+++.-++.|++.-   -.+++..    |+.+. ..+
T Consensus       176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~a--gA~~IiAvD~~~~Kl~~A~~fG---AT~~vn~~~~~~vv~~-i~~  249 (366)
T COG1062         176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAA--GAGRIIAVDINPEKLELAKKFG---ATHFVNPKEVDDVVEA-IVE  249 (366)
T ss_pred             HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHc--CCceEEEEeCCHHHHHHHHhcC---CceeecchhhhhHHHH-HHH
Confidence            455666778999999999987666523323222  2359999999999999999863   2233221    11110 011


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCch---hhHHHhhhcCCCccccccceeeeeccccC
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPI---YDLYEKLSRKPKWTEYTQVRTYRCLLFTG  176 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~---~~~~~~~~~~~~W~~~~~~r~~~m~pl~g  176 (433)
                      .-++-.|.++-.     ..+ ..+++.....+.++|..++........   ....+. .....|...             
T Consensus       250 ~T~gG~d~~~e~-----~G~-~~~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~~l-v~gr~~~Gs-------------  309 (366)
T COG1062         250 LTDGGADYAFEC-----VGN-VEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQL-VTGRVWKGS-------------  309 (366)
T ss_pred             hcCCCCCEEEEc-----cCC-HHHHHHHHHHHhcCCeEEEEecCCCCceeecChHHe-eccceEEEE-------------
Confidence            111244554321     112 236777778888899988875432210   111111 111222221             


Q ss_pred             ceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeE
Q psy11646        177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTF  245 (433)
Q Consensus       177 v~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~f  245 (433)
                         ..|+........++..+...               |.-.+|.+.+..+-+.-.|=|-..|+.|-.+
T Consensus       310 ---~~G~~~p~~diP~lv~~y~~---------------Gkl~~d~lvt~~~~Le~INeaf~~m~~G~~I  360 (366)
T COG1062         310 ---AFGGARPRSDIPRLVDLYMA---------------GKLPLDRLVTHTIPLEDINEAFDLMHEGKSI  360 (366)
T ss_pred             ---eecCCccccchhHHHHHHHc---------------CCCchhHHhhccccHHHHHHHHHHHhCCcee
Confidence               23444555666777777654               3444577777666666677777777776543

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.64  E-value=10  Score=36.54  Aligned_cols=182  Identities=12%  Similarity=0.119  Sum_probs=98.4

Q ss_pred             EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--------CCC------------CeEEEEecccCC
Q psy11646         36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--------TNP------------KLEFVVANIADQ   95 (433)
Q Consensus        36 ~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--------~~~------------~i~~~~~Di~~~   95 (433)
                      +|-=||+|.=...  ++......+ .+|+++|++++.++.++++.        ...            ++.+ ..|... 
T Consensus         5 kI~VIG~G~mG~~--ia~~la~~g-~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~-   79 (282)
T PRK05808          5 KIGVIGAGTMGNG--IAQVCAVAG-YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD-   79 (282)
T ss_pred             EEEEEccCHHHHH--HHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH-
Confidence            5777888753332  111111133 58999999999987654321        001            2221 112111 


Q ss_pred             cccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceee-eeccc
Q psy11646         96 NLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTY-RCLLF  174 (433)
Q Consensus        96 ~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~-~m~pl  174 (433)
                            ....|+|+..-. ....-...+++++.+.++|+..+ .+....-+.......+....   ++..-+.. +..-.
T Consensus        80 ------~~~aDlVi~av~-e~~~~k~~~~~~l~~~~~~~~il-~s~ts~~~~~~la~~~~~~~---r~ig~h~~~P~~~~  148 (282)
T PRK05808         80 ------LKDADLVIEAAT-ENMDLKKKIFAQLDEIAKPEAIL-ATNTSSLSITELAAATKRPD---KVIGMHFFNPVPVM  148 (282)
T ss_pred             ------hccCCeeeeccc-ccHHHHHHHHHHHHhhCCCCcEE-EECCCCCCHHHHHHhhCCCc---ceEEeeccCCcccC
Confidence                  145788877532 12222357888999999888755 33333333333333222111   11111111 01123


Q ss_pred             cCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCC
Q psy11646        175 TGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPG  242 (433)
Q Consensus       175 ~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~g  242 (433)
                      ++++...+..++.++.+.+...+..-+...+..-         +...+...++..+.++-|.+++..|
T Consensus       149 ~~vev~~g~~t~~e~~~~~~~l~~~lGk~pv~~~---------d~~g~i~~Ri~~~~~~ea~~~~~~g  207 (282)
T PRK05808        149 KLVEIIRGLATSDATHEAVEALAKKIGKTPVEVK---------NAPGFVVNRILIPMINEAIFVLAEG  207 (282)
T ss_pred             ccEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEec---------CccChHHHHHHHHHHHHHHHHHHhC
Confidence            4666777788888888888777776665555542         2224667777777777777777666

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=85.41  E-value=3.4  Score=37.45  Aligned_cols=106  Identities=13%  Similarity=0.167  Sum_probs=69.7

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCC--cEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc----cccCcEe
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSV--VKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES----IFLAKFN  106 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~--~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~----~~~~~fD  106 (433)
                      .+..|+|+|...|..+. +.+...-..+  .+|+++||+-..+..+...  .++|.|++++-.+.....    ...+.--
T Consensus        69 ~P~lvIE~Gs~~GGSal-~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--~p~i~f~egss~dpai~eqi~~~~~~y~k  145 (237)
T COG3510          69 QPSLVIEFGSRHGGSAL-FFANMMISIGQPFKVLGVDIDIKPLDPAARE--VPDILFIEGSSTDPAIAEQIRRLKNEYPK  145 (237)
T ss_pred             CCceeEeeccccCchhh-hhhHhHHhcCCCceEEEEecccCcCChhhhc--CCCeEEEeCCCCCHHHHHHHHHHhcCCCc
Confidence            45689999999998763 3332211112  5899999987765444332  378999999876543221    1112234


Q ss_pred             EEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        107 KIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       107 ~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +.++..+-|+.+..-+.++-...+|.-|-++++-+
T Consensus       146 IfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeD  180 (237)
T COG3510         146 IFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVED  180 (237)
T ss_pred             EEEEecCCchHHHHHHHHHHhhhHhhcCceEEEec
Confidence            44555667777777777888889999999888765

>PRK11524 putative methyltransferase; Provisional

Probab=85.22  E-value=1.2  Score=43.24  Aligned_cols=56  Identities=13%  Similarity=0.114  Sum_probs=37.7

Q ss_pred             CeEEEEecccCCcccccccCcEeEEEEcccccc----------------hhhHHHHHHHHHHhccCCCEEEEE
Q psy11646         84 KLEFVVANIADQNLESIFLAKFNKIFSFYCLHW----------------VQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        84 ~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~----------------~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      ...++++|..+. +....+++||+|++...+.-                ..-....+.++.++|||||.+++.
T Consensus         8 ~~~i~~gD~~~~-l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524          8 AKTIIHGDALTE-LKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             CCEEEeccHHHH-HHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            445677777653 22233478999999655421                111356889999999999999885

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=85.04  E-value=7  Score=37.13  Aligned_cols=119  Identities=14%  Similarity=0.187  Sum_probs=63.3

Q ss_pred             HHHHHHhcC-CCCCCEEEEECCCCChhHHHH---hcccCCCCCcEEEEEeCCH--------------------------H
Q psy11646         22 LSQYIDQFK-WTDNESVLDVGCGPGNVTSKL---LLPNLPKSVVKLVGLDVSP--------------------------N   71 (433)
Q Consensus        22 l~~l~~~l~-~~~~~~VLDIGcG~G~~~~~~---l~~~~~~~~~~v~gvDiS~--------------------------~   71 (433)
                      |.++++.+. ..-++.|+|+||-.|..+..+   ++.. ....-++++.|.-+                          .
T Consensus        62 L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~-~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~  140 (248)
T PF05711_consen   62 LYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAY-GNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAV  140 (248)
T ss_dssp             HHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCT-TTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTH
T ss_pred             HHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHh-CCCCCEEEEEeCCCCCCCCccccccccchhhhhhccccccc
Confidence            334444433 234568999999999866322   2222 11113677776421                          2


Q ss_pred             HHHHHHhhc-----CCCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646         72 MIKHAKNHH-----TNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        72 ~l~~A~~~~-----~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      .++..++++     ...++.++.+.+.+. ++....+++-++..-  ..+-+....+|..++..|.|||.+++-+.+.
T Consensus       141 s~e~V~~n~~~~gl~~~~v~~vkG~F~dT-Lp~~p~~~IAll~lD--~DlYesT~~aLe~lyprl~~GGiIi~DDY~~  215 (248)
T PF05711_consen  141 SLEEVRENFARYGLLDDNVRFVKGWFPDT-LPDAPIERIALLHLD--CDLYESTKDALEFLYPRLSPGGIIIFDDYGH  215 (248)
T ss_dssp             HHHHHHHCCCCTTTSSTTEEEEES-HHHH-CCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred             CHHHHHHHHHHcCCCcccEEEECCcchhh-hccCCCccEEEEEEe--ccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence            345556665     135799999998654 443223333222221  2223456788999999999999999876554

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>KOG2651|consensus

Probab=84.91  E-value=3  Score=41.63  Aligned_cols=53  Identities=23%  Similarity=0.419  Sum_probs=37.4

Q ss_pred             HHHHHHhcCC-CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHh
Q psy11646         22 LSQYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN   78 (433)
Q Consensus        22 l~~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~   78 (433)
                      +.+++..+.. .+-..|+|+|+|.|.++ .++.-.  . +..|.+||-|....+.|++
T Consensus       141 lselvSsi~~f~gi~~vvD~GaG~G~LS-r~lSl~--y-~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  141 LSELVSSISDFTGIDQVVDVGAGQGHLS-RFLSLG--Y-GLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             HHHHHHHHHhhcCCCeeEEcCCCchHHH-HHHhhc--c-CceEEEeccchHHHHHHHH
Confidence            3444444433 34568999999999999 666522  2 2689999999888777754

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=84.18  E-value=21  Score=34.54  Aligned_cols=182  Identities=13%  Similarity=0.098  Sum_probs=91.7

Q ss_pred             CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--------CCC------------CeEEEEecccC
Q psy11646         35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--------TNP------------KLEFVVANIAD   94 (433)
Q Consensus        35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--------~~~------------~i~~~~~Di~~   94 (433)
                      .+|-=||+|.=...  ++......+ .+|++.|.+++.++.++++.        ...            ++.+ ..+.+.
T Consensus         5 ~~V~vIG~G~mG~~--iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~   80 (295)
T PLN02545          5 KKVGVVGAGQMGSG--IAQLAAAAG-MDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC-TTNLEE   80 (295)
T ss_pred             CEEEEECCCHHHHH--HHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe-eCCHHH
Confidence            46777888753332  222222233 69999999999987655432        000            1111 111110


Q ss_pred             CcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeecc-
Q psy11646         95 QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLL-  173 (433)
Q Consensus        95 ~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~p-  173 (433)
                             -...|+|+..-. ........++.++...++|+..++ +..+.-+.............   +..  ...+.| 
T Consensus        81 -------~~~aD~Vieav~-e~~~~k~~v~~~l~~~~~~~~il~-s~tS~i~~~~l~~~~~~~~r---~~g--~h~~~pp  146 (295)
T PLN02545         81 -------LRDADFIIEAIV-ESEDLKKKLFSELDRICKPSAILA-SNTSSISITRLASATQRPQQ---VIG--MHFMNPP  146 (295)
T ss_pred             -------hCCCCEEEEcCc-cCHHHHHHHHHHHHhhCCCCcEEE-ECCCCCCHHHHHhhcCCCcc---eEE--EeccCCc
Confidence                   134688887533 222234567888888888877543 22222233332222211111   111  111111 


Q ss_pred             --ccCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCC
Q psy11646        174 --FTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGG  243 (433)
Q Consensus       174 --l~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG  243 (433)
                        .+.+..+.+.-++.+..+.+...+..-+-..++....|         .+...++..+.++-|.+++..|.
T Consensus       147 ~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~---------g~i~nri~~~~~~ea~~~~~~gv  209 (295)
T PLN02545        147 PIMKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYP---------GFIVNRILMPMINEAFYALYTGV  209 (295)
T ss_pred             ccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCcc---------cHHHHHHHHHHHHHHHHHHHcCC
Confidence              12344555556666666666666655444444432222         25677777777777777777764

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=84.06  E-value=6.8  Score=31.89  Aligned_cols=92  Identities=12%  Similarity=0.175  Sum_probs=57.6

Q ss_pred             CCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc-cccCcEeEEEEcccccchhhH
Q psy11646         42 CGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES-IFLAKFNKIFSFYCLHWVQDQ  120 (433)
Q Consensus        42 cG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~-~~~~~fD~Vis~~~l~~~~d~  120 (433)
                      ||.|..+..++..+.. ....++.+|.+++.++.+++.    .+.++.+|..+...-. ..-+..|.|++...-.   ..
T Consensus         4 ~G~g~~~~~i~~~L~~-~~~~vvvid~d~~~~~~~~~~----~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d---~~   75 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKE-GGIDVVVIDRDPERVEELREE----GVEVIYGDATDPEVLERAGIEKADAVVILTDDD---EE   75 (116)
T ss_dssp             ES-SHHHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHT----TSEEEES-TTSHHHHHHTTGGCESEEEEESSSH---HH
T ss_pred             EcCCHHHHHHHHHHHh-CCCEEEEEECCcHHHHHHHhc----ccccccccchhhhHHhhcCccccCEEEEccCCH---HH
Confidence            5667777555554444 435899999999999998875    4789999987643222 2236788777754411   12


Q ss_pred             HHHHHHHHHhccCCCEEEEEe
Q psy11646        121 RQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       121 ~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ...+....+-+.|...++...
T Consensus        76 n~~~~~~~r~~~~~~~ii~~~   96 (116)
T PF02254_consen   76 NLLIALLARELNPDIRIIARV   96 (116)
T ss_dssp             HHHHHHHHHHHTTTSEEEEEE
T ss_pred             HHHHHHHHHHHCCCCeEEEEE
Confidence            223444556667777777654

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences

Probab=83.82  E-value=3  Score=47.63  Aligned_cols=105  Identities=23%  Similarity=0.267  Sum_probs=71.3

Q ss_pred             HHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEee-cCC-HHHHHHHHhcccceeE
Q psy11646        193 IFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFR-SRN-VVCLETKFQIFFENVS  270 (433)
Q Consensus       193 il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~-g~~-~~~~~~~l~~~F~~v~  270 (433)
                      +...+...-+.+|.||.---..|-.+++  .+.+++.+.++.+.+....||.+|+|+=- ... +..+..++...|..+.
T Consensus       561 l~~p~pTGtf~fVYSDVDQV~dg~~dl~--As~r~~~~~l~~~l~~tt~GG~~v~KiNFPT~~vW~~if~~~s~~~~~~~  638 (1289)
T PF06016_consen  561 LTRPFPTGTFTFVYSDVDQVQDGGDDLV--ASNRAAISQLDVALQMTTAGGSTVVKINFPTRAVWTQIFRQYSPRFTSYH  638 (1289)
T ss_dssp             TTS--S---EEEEEEE-----SSTTTHH--HHHHHHHHHHHHHHHHEEEEEEEEEEESS--CCHHHHHHHHCCCCECEEE
T ss_pred             eccCCCCCceEEEEecchhhccCCcchh--hhhHHHHHHHHHHHHhhcCCceEEEEEcCCChHHHHHHHHHhccccceee
Confidence            4445666778999999988888877765  45677888899999999999999999944 444 6899999999999999


Q ss_pred             EecCCCCcccccceeEEEeeccCCCCCCCCc
Q psy11646        271 IAKPKSSRNSSIESFIVCQNYRPPKDYVPTI  301 (433)
Q Consensus       271 ~~KP~~sr~~s~E~~~v~~~~~~~~~~~~~~  301 (433)
                      ++||-=  .+|.|+|+|..+......+.|+.
T Consensus       639 ivKPlI--~NNvEvflv~~~~~~~~~~~~t~  667 (1289)
T PF06016_consen  639 IVKPLI--VNNVEVFLVFGGRTPSGNLTPTT  667 (1289)
T ss_dssp             EEEEES--SSS--EEEEECECSTT----BBH
T ss_pred             Eeccee--ecceEEEEEEEeecCCCCCCCch
Confidence            999974  47899999955554566666643

The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.

>KOG0022|consensus

Probab=83.51  E-value=23  Score=34.75  Aligned_cols=179  Identities=17%  Similarity=0.248  Sum_probs=100.1

Q ss_pred             HHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEe-cccCCcccc----
Q psy11646         25 YIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVA-NIADQNLES----   99 (433)
Q Consensus        25 l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~-Di~~~~l~~----   99 (433)
                      ..+..+..||.+|.=+|+|.=.++...-++.  .+..+++|+|++++-.+.|++.-   -.+++.- |... +..+    
T Consensus       184 a~~~Akv~~GstvAVfGLG~VGLav~~Gaka--~GAsrIIgvDiN~~Kf~~ak~fG---aTe~iNp~d~~~-~i~evi~E  257 (375)
T KOG0022|consen  184 AWNTAKVEPGSTVAVFGLGGVGLAVAMGAKA--AGASRIIGVDINPDKFEKAKEFG---ATEFINPKDLKK-PIQEVIIE  257 (375)
T ss_pred             hhhhcccCCCCEEEEEecchHHHHHHHhHHh--cCcccEEEEecCHHHHHHHHhcC---cceecChhhccc-cHHHHHHH
Confidence            3444556789999999998877664444443  33469999999999999999763   2222211 2222 1111    


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCC-CEEEEEeccCCc--hhhHHHhhhcCCCccccccceeeeeccccC
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPG-GEVLLLLNAFNP--IYDLYEKLSRKPKWTEYTQVRTYRCLLFTG  176 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpG-G~lll~~~~~~p--~~~~~~~~~~~~~W~~~~~~r~~~m~pl~g  176 (433)
                      .-++.+|.-+-  ++-    ...++++.....+.| |.-++......+  +.-....+.....|..-.            
T Consensus       258 mTdgGvDysfE--c~G----~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~~GR~~~Gs~------------  319 (375)
T KOG0022|consen  258 MTDGGVDYSFE--CIG----NVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLVTGRTWKGSA------------  319 (375)
T ss_pred             HhcCCceEEEE--ecC----CHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhccccEEEEEe------------
Confidence            11244554332  221    234566666777777 776665433222  000000111111221111            


Q ss_pred             ceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEE
Q psy11646        177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFV  246 (433)
Q Consensus       177 v~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv  246 (433)
                          -|-+........+....-.               +.-++|++..++|-..-.+=|-.+|..|-++-
T Consensus       320 ----FGG~K~~~~iP~lV~~y~~---------------~~l~ld~~ITh~l~f~~In~AF~ll~~GksiR  370 (375)
T KOG0022|consen  320 ----FGGFKSKSDIPKLVKDYMK---------------KKLNLDEFITHELPFEEINKAFDLLHEGKSIR  370 (375)
T ss_pred             ----cccccchhhhhHHHHHHHh---------------CccchhhhhhcccCHHHHHHHHHHHhCCceEE
Confidence                2223333444555544433               34557999999999999999999999987763

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=83.49  E-value=5.8  Score=37.00  Aligned_cols=95  Identities=18%  Similarity=0.260  Sum_probs=57.6

Q ss_pred             CCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc----cccCcEe
Q psy11646         32 TDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES----IFLAKFN  106 (433)
Q Consensus        32 ~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~----~~~~~fD  106 (433)
                      .++.+||-.|+|+ |..+..++. .  .+ .++++++.++...+.+++.. .  ..+  .+........    ...+.+|
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~-~--~g-~~v~~~~~~~~~~~~~~~~g-~--~~~--~~~~~~~~~~~~~~~~~~~~d  203 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAK-A--AG-ARVIVTDRSDEKLELAKELG-A--DHV--IDYKEEDLEEELRLTGGGGAD  203 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH-H--cC-CeEEEEcCCHHHHHHHHHhC-C--cee--ccCCcCCHHHHHHHhcCCCCC
Confidence            6788999999986 444433332 2  22 58999999998888886542 1  111  1111111110    1125689


Q ss_pred             EEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        107 KIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       107 ~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +++.+..-      ...+..+.+.|+++|.++...
T Consensus       204 ~vi~~~~~------~~~~~~~~~~l~~~G~~v~~~  232 (271)
T cd05188         204 VVIDAVGG------PETLAQALRLLRPGGRIVVVG  232 (271)
T ss_pred             EEEECCCC------HHHHHHHHHhcccCCEEEEEc
Confidence            99865432      135667788999999988754

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=83.39  E-value=2.7  Score=41.01  Aligned_cols=71  Identities=13%  Similarity=0.184  Sum_probs=50.1

Q ss_pred             EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEccccc
Q psy11646         36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLH  115 (433)
Q Consensus        36 ~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~  115 (433)
                      +++|+=||.|.++..+ ..   .++..+.++|+++.+.+.-+.++.    .....|+.......... .+|+++......
T Consensus         2 ~~~dlFsG~Gg~~~g~-~~---ag~~~~~a~e~~~~a~~~y~~N~~----~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ   72 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGL-EQ---AGFEVVWAVEIDPDACETYKANFP----EVICGDITEIDPSDLPK-DVDLLIGGPPCQ   72 (335)
T ss_dssp             EEEEET-TTTHHHHHH-HH---TTEEEEEEEESSHHHHHHHHHHHT----EEEESHGGGCHHHHHHH-T-SEEEEE---T
T ss_pred             cEEEEccCccHHHHHH-Hh---cCcEEEEEeecCHHHHHhhhhccc----ccccccccccccccccc-cceEEEeccCCc
Confidence            7999999999998444 32   334578999999999999999873    88889998865333332 599999865543

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=83.14  E-value=27  Score=33.86  Aligned_cols=184  Identities=15%  Similarity=0.154  Sum_probs=99.7

Q ss_pred             CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--------CCC------------CeEEEEecccC
Q psy11646         35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--------TNP------------KLEFVVANIAD   94 (433)
Q Consensus        35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--------~~~------------~i~~~~~Di~~   94 (433)
                      .+|-=||+|+-.......  .. ..+.+|+..|.+++.++.++++.        ...            ++++ ..|.+.
T Consensus         6 ~~V~ViGaG~mG~~iA~~--~a-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~   81 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEV--CA-RAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGD   81 (286)
T ss_pred             cEEEEEcccHHHHHHHHH--HH-hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHH
Confidence            378888988644432221  11 22379999999999998866553        001            1111 112211


Q ss_pred             CcccccccCcEeEEEEcccccchhhHHHHHHHHHHhc-cCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeee-ec
Q psy11646         95 QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLL-MPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYR-CL  172 (433)
Q Consensus        95 ~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~L-kpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~-m~  172 (433)
                             -...|+|+-. +.+..+-...++..+.+.+ +|+..+ .+..+..+.............   +..-+... ..
T Consensus        82 -------~~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il-~snTS~~~~~~la~~~~~~~r---~~g~hf~~P~~  149 (286)
T PRK07819         82 -------FADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVL-ASNTSSIPIMKLAAATKRPGR---VLGLHFFNPVP  149 (286)
T ss_pred             -------hCCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEE-EECCCCCCHHHHHhhcCCCcc---EEEEecCCCcc
Confidence                   1456888775 3333444556788888888 666544 333333344333332221111   11111111 12


Q ss_pred             cccCceEEEccccccchHHHHHHhcCC-CCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCC
Q psy11646        173 LFTGVIQVQGDITKESTIKEIFSHFDD-EKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGG  243 (433)
Q Consensus       173 pl~gv~~iqgDi~~~~t~~~il~~~~~-~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG  243 (433)
                      -.+.++.+.+..+++.+...+...+.. -+-..++..         +...+...++..+.++-|.++|..|-
T Consensus       150 ~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~---------d~pGfi~nRi~~~~~~Ea~~ll~eGv  212 (286)
T PRK07819        150 VLPLVELVPTLVTSEATVARAEEFASDVLGKQVVRAQ---------DRSGFVVNALLVPYLLSAIRMVESGF  212 (286)
T ss_pred             cCceEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEec---------CCCChHHHHHHHHHHHHHHHHHHhCC
Confidence            235667888888888888877777442 222233222         22346667777777777778777663

>cd08230 glucose_DH Glucose dehydrogenase

Probab=82.95  E-value=6.7  Score=38.97  Aligned_cols=95  Identities=19%  Similarity=0.232  Sum_probs=55.5

Q ss_pred             CCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeC---CHHHHHHHHhhcCCCCeEEEEecccCCccc-ccccCcE
Q psy11646         31 WTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDV---SPNMIKHAKNHHTNPKLEFVVANIADQNLE-SIFLAKF  105 (433)
Q Consensus        31 ~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDi---S~~~l~~A~~~~~~~~i~~~~~Di~~~~l~-~~~~~~f  105 (433)
                      ..++.+||=+|+|. |..+ ..+++..  + .++++++.   ++.-++.+++. +   ...+  +..+.... ......+
T Consensus       170 ~~~g~~vlI~G~G~vG~~a-~q~ak~~--G-~~vi~~~~~~~~~~~~~~~~~~-G---a~~v--~~~~~~~~~~~~~~~~  239 (355)
T cd08230         170 TWNPRRALVLGAGPIGLLA-ALLLRLR--G-FEVYVLNRRDPPDPKADIVEEL-G---ATYV--NSSKTPVAEVKLVGEF  239 (355)
T ss_pred             cCCCCEEEEECCCHHHHHH-HHHHHHc--C-CeEEEEecCCCCHHHHHHHHHc-C---CEEe--cCCccchhhhhhcCCC
Confidence            35788999998754 2233 2233322  3 47999986   67888888754 2   2221  21111110 0012468


Q ss_pred             eEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        106 NKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       106 D~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |+|+-.-.-      ...+....+.|++||.+++..
T Consensus       240 d~vid~~g~------~~~~~~~~~~l~~~G~~v~~G  269 (355)
T cd08230         240 DLIIEATGV------PPLAFEALPALAPNGVVILFG  269 (355)
T ss_pred             CEEEECcCC------HHHHHHHHHHccCCcEEEEEe
Confidence            888875541      235677889999999987754

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=82.24  E-value=2.9  Score=42.28  Aligned_cols=71  Identities=13%  Similarity=0.236  Sum_probs=53.6

Q ss_pred             HHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcccccchhh--HHHHHHHHHHhccCCCEEEEEeccC
Q psy11646         71 NMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQD--QRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        71 ~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      +..+..+++.  .++++.+.++++. +....++++|.++......|+++  ....++++.+.++|||+++.-..+.
T Consensus       265 e~f~~lr~~~--drv~i~t~si~~~-L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~  337 (380)
T PF11899_consen  265 ENFEALRARL--DRVRIHTDSIEEV-LRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV  337 (380)
T ss_pred             hHHHHHhcCC--CeEEEEeccHHHH-HHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence            3334444443  7899999998774 33334599999999999999964  5677999999999999999865443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>KOG2352|consensus

Probab=82.13  E-value=2.1  Score=44.10  Aligned_cols=110  Identities=20%  Similarity=0.221  Sum_probs=73.1

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC---CCCeEEEEecccCCc--ccc--cccCcE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT---NPKLEFVVANIADQN--LES--IFLAKF  105 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~---~~~i~~~~~Di~~~~--l~~--~~~~~f  105 (433)
                      .+..+|-+|-|.|.+. .++...++..  +++++++.|.|++.|+..++   ..+..+...|-...-  ...  ..+..|
T Consensus       295 ~~~~~lvvg~ggG~l~-sfl~~~~p~~--~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~  371 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLP-SFLHMSLPKF--QITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICP  371 (482)
T ss_pred             ccCcEEEEecCCCccc-cceeeecCcc--ceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCC
Confidence            4667899999999998 7777777765  99999999999999999882   122222222321110  000  123678


Q ss_pred             eEEEE----cccccchh----h--HHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        106 NKIFS----FYCLHWVQ----D--QRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       106 D~Vis----~~~l~~~~----d--~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      |+++.    .. .|.+.    .  ...++..++..|.|.|.+++-..+.+.
T Consensus       372 dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~  421 (482)
T KOG2352|consen  372 DVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS  421 (482)
T ss_pred             cEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence            88875    22 33321    1  246789999999999999887665543

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=81.66  E-value=17  Score=35.68  Aligned_cols=94  Identities=9%  Similarity=-0.027  Sum_probs=57.4

Q ss_pred             cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEE
Q psy11646         29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKI  108 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~V  108 (433)
                      ...+++.+||=.|+|.-......+++.  .+ .++++++.+++-++.|++.-    .... .+..+.  .   .+.+|++
T Consensus       161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~--~G-~~vi~~~~~~~~~~~a~~~G----a~~v-i~~~~~--~---~~~~d~~  227 (329)
T TIGR02822       161 ASLPPGGRLGLYGFGGSAHLTAQVALA--QG-ATVHVMTRGAAARRLALALG----AASA-GGAYDT--P---PEPLDAA  227 (329)
T ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHH--CC-CeEEEEeCChHHHHHHHHhC----Ccee-cccccc--C---cccceEE
Confidence            455789999999975332221223332  23 57999999999988888752    1111 121111  1   1457876


Q ss_pred             EEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        109 FSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       109 is~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +.....      ...+....+.|++||++++..
T Consensus       228 i~~~~~------~~~~~~~~~~l~~~G~~v~~G  254 (329)
T TIGR02822       228 ILFAPA------GGLVPPALEALDRGGVLAVAG  254 (329)
T ss_pred             EECCCc------HHHHHHHHHhhCCCcEEEEEe
Confidence            654332      236778889999999998764

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=81.39  E-value=8.4  Score=37.75  Aligned_cols=98  Identities=21%  Similarity=0.300  Sum_probs=56.6

Q ss_pred             cCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccccc--ccCcE
Q psy11646         29 FKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESI--FLAKF  105 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~--~~~~f  105 (433)
                      +...++.+||-.|||. |..+..+++ ..  +..++++++.++...+.+++. +..  .++  +.....+...  ..+.+
T Consensus       161 ~~~~~~~~VLI~g~g~vG~~~~~lak-~~--G~~~v~~~~~s~~~~~~~~~~-g~~--~vi--~~~~~~~~~~~~~~~~v  232 (339)
T cd08232         161 AGDLAGKRVLVTGAGPIGALVVAAAR-RA--GAAEIVATDLADAPLAVARAM-GAD--ETV--NLARDPLAAYAADKGDF  232 (339)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHH-Hc--CCcEEEEECCCHHHHHHHHHc-CCC--EEE--cCCchhhhhhhccCCCc
Confidence            3334788999988764 444433333 22  312789999999988876653 211  111  2211111110  11458


Q ss_pred             eEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        106 NKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       106 D~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      |+|+.....      ...++.+.+.|+++|+++..
T Consensus       233 d~vld~~g~------~~~~~~~~~~L~~~G~~v~~  261 (339)
T cd08232         233 DVVFEASGA------PAALASALRVVRPGGTVVQV  261 (339)
T ss_pred             cEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence            999875432      23567888999999998864

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=81.09  E-value=12  Score=37.11  Aligned_cols=99  Identities=14%  Similarity=0.091  Sum_probs=58.9

Q ss_pred             cCCCCCCEEEEECCC--CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEe----cccCCccccccc
Q psy11646         29 FKWTDNESVLDVGCG--PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVA----NIADQNLESIFL  102 (433)
Q Consensus        29 l~~~~~~~VLDIGcG--~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~----Di~~~~l~~~~~  102 (433)
                      ...+++.+||=.|++  .|..+..+++ .  .+ .++++++.+++..+.+++.++..  .++..    +... .+.....
T Consensus       154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk-~--~G-~~Vi~~~~~~~k~~~~~~~lGa~--~vi~~~~~~~~~~-~i~~~~~  226 (348)
T PLN03154        154 CSPKKGDSVFVSAASGAVGQLVGQLAK-L--HG-CYVVGSAGSSQKVDLLKNKLGFD--EAFNYKEEPDLDA-ALKRYFP  226 (348)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHH-H--cC-CEEEEEcCCHHHHHHHHHhcCCC--EEEECCCcccHHH-HHHHHCC
Confidence            445789999999873  4555533333 2  23 58999999998888887544221  11111    1110 0111112


Q ss_pred             CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        103 AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +.+|+|+-.-.       ...+....+.|++||++++..
T Consensus       227 ~gvD~v~d~vG-------~~~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        227 EGIDIYFDNVG-------GDMLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             CCcEEEEECCC-------HHHHHHHHHHhccCCEEEEEC
Confidence            45898886433       135677889999999988753

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=80.47  E-value=49  Score=32.29  Aligned_cols=68  Identities=24%  Similarity=0.236  Sum_probs=42.7

Q ss_pred             eEEEecCCCCCCCCCch---------hHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHHHHHHHHhcccceeEEec
Q psy11646        203 DLVVFDGAPDVTGLHDL---------DEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAK  273 (433)
Q Consensus       203 dlVvsD~ap~~tG~~~~---------D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~~~~~~l~~~F~~v~~~K  273 (433)
                      .+..+|...++.+.-+.         ..-....++..-+.-|...|++||.+.+=+-+   .-.+...|+..|.+|...+
T Consensus       211 ~v~~s~~~~~v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~---~l~y~~~L~~~Fg~v~~la  287 (300)
T COG2813         211 EVWASNLYEPVEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANR---HLPYEKKLKELFGNVEVLA  287 (300)
T ss_pred             EEEEecccccccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcC---CCChHHHHHHhcCCEEEEE
Confidence            55666666665551111         22233455666677789999999998665553   4455566777888877654

>KOG1501|consensus

Probab=80.35  E-value=2.7  Score=42.67  Aligned_cols=41  Identities=22%  Similarity=0.340  Sum_probs=32.8

Q ss_pred             EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc
Q psy11646         36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH   80 (433)
Q Consensus        36 ~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~   80 (433)
                      .|||||+|||-++ .++.+.   ++-.+++++.-..|.+.|++-.
T Consensus        69 ~vLdigtGTGLLS-mMAvra---gaD~vtA~EvfkPM~d~arkI~  109 (636)
T KOG1501|consen   69 FVLDIGTGTGLLS-MMAVRA---GADSVTACEVFKPMVDLARKIM  109 (636)
T ss_pred             EEEEccCCccHHH-HHHHHh---cCCeEEeehhhchHHHHHHHHH
Confidence            5899999999998 444332   2247999999999999999876

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=80.18  E-value=38  Score=32.69  Aligned_cols=181  Identities=14%  Similarity=0.129  Sum_probs=91.7

Q ss_pred             CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--------CC------------CCeEEEEecccC
Q psy11646         35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--------TN------------PKLEFVVANIAD   94 (433)
Q Consensus        35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--------~~------------~~i~~~~~Di~~   94 (433)
                      .+|.=||+|.-......  .+...+ .+|+..|.+++.++.+.++.        ..            .++.+ ..|.+.
T Consensus         5 ~kI~vIGaG~mG~~iA~--~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~   80 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAH--VCALAG-YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED   80 (292)
T ss_pred             CEEEEECCcHHHHHHHH--HHHHCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH
Confidence            46888888865443222  122233 68999999999888765421        00            11221 112211


Q ss_pred             CcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeeccc
Q psy11646         95 QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLF  174 (433)
Q Consensus        95 ~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~pl  174 (433)
                             -...|+|+..-.- ...-...+++.+...++|+..++....+ -+...+...+...   .++...+  .+.|.
T Consensus        81 -------~~~aD~Vieavpe-~~~~k~~~~~~l~~~~~~~~ii~s~ts~-~~~s~la~~~~~~---~r~~g~h--~~~p~  146 (292)
T PRK07530         81 -------LADCDLVIEAATE-DETVKRKIFAQLCPVLKPEAILATNTSS-ISITRLASATDRP---ERFIGIH--FMNPV  146 (292)
T ss_pred             -------hcCCCEEEEcCcC-CHHHHHHHHHHHHhhCCCCcEEEEcCCC-CCHHHHHhhcCCc---ccEEEee--ccCCc
Confidence                   1456888875431 1112346678888899988765422222 2222222221111   1111111  12222


Q ss_pred             ---cCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCC
Q psy11646        175 ---TGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPG  242 (433)
Q Consensus       175 ---~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~g  242 (433)
                         +.+..+.+..+++++.+.+...+..-+-..++....|         .++..++..+.++-+..++..|
T Consensus       147 ~~~~~vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p---------g~i~nRl~~~~~~ea~~~~~~g  208 (292)
T PRK07530        147 PVMKLVELIRGIATDEATFEAAKEFVTKLGKTITVAEDFP---------AFIVNRILLPMINEAIYTLYEG  208 (292)
T ss_pred             ccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC---------ChHHHHHHHHHHHHHHHHHHhC
Confidence               3556666777888887777777665544444433233         3455555555555555555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	433
2nyu_A	196	Crystal Structure Of Human Ftsj Homolog 2 (E.Coli)		3e-11
1eiz_A	180	Ftsj Rna Methyltransferase Complexed With S- Adenos		6e-11
2plw_A	201	Crystal Structure Of A Ribosomal Rna Methyltransfer		1e-08
3l8d_A	242	Crystal Structure Of Methyltransferase From Bacillu		1e-05
3ccf_A	279	Crystal Structure Of Putative Methyltransferase (Yp		2e-05
3dtn_A	234	Crystal Structure Of Putative Methyltransferase-mm_		4e-04

>pdb|2NYU|A Chain A, Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) Protein In Complex With S-Adenosylmethionine Length = 196

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%)
Query: 182 GDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKP 241
            D+T   T + I       + D+++ D AP+ TG  DLD      L +  L++T  +L+P
Sbjct: 78  ADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP 137
Query: 242 GGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKDYV 298
           GGTF+ K +       L+ +    F+NV I KP++SR  S E + +   Y   K  V
Sbjct: 138 GGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGRKGTV 194

>pdb|1EIZ|A Chain A, Ftsj Rna Methyltransferase Complexed With S- Adenosylmethionine Length = 180

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 11/161 (6%)
Query: 144 FNPIYDLYEKLSRKPKWTEY--TQV----RTYRCLLF-----TGVIQVQGDITKESTIKE 192
           F P   + +  +    W++Y  TQ+    R   C L       GV  +QGD   E  +K 
Sbjct: 20  FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKA 79
Query: 193 IFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRS 252
           +     D KV +V+ D AP+++G   +D      L+  AL +   +L PGG+FV K+F+ 
Sbjct: 80  LLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139
Query: 253 RNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRP 293
                   + +  F  V + KP SSR  S E +IV    +P
Sbjct: 140 EGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKP 180

>pdb|2PLW|A Chain A, Crystal Structure Of A Ribosomal Rna Methyltransferase, Putative, From Plasmodium Falciparum (Pf13_0052) Length = 201

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 9/109 (8%)
Query: 190 IKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFL---LKPGGTFV 246
           +KEI     D+K+D+++ D A    G + +D+HL    L   L+IT F+   +  GGT++
Sbjct: 98  LKEILQ---DKKIDIILSDAAVPCIG-NKIDDHLNSCEL--TLSITHFMEQYINIGGTYI 151
Query: 247 GKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
            K++       L+T  +  F+ V   KPK+SRN S E ++VC+N+   K
Sbjct: 152 VKMYLGSQTNNLKTYLKGMFQLVHTTKPKASRNESREIYLVCKNFLGRK 200

>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus Thuringiensis Length = 242

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 37  VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN 96
           VLDVGCG G  T KL      ++  K VG+D+S   I+  K     P L F+  +++   
Sbjct: 57  VLDVGCGDGYGTYKL-----SRTGYKAVGVDISEVXIQKGKERGEGPDLSFIKGDLSSLP 111
Query: 97  LESIFLAKFNKIFSFYCLHWVQDQRQAISNI 127
            E+    +F  I +   L W ++  +A++ I
Sbjct: 112 FEN---EQFEAIXAINSLEWTEEPLRALNEI 139

>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase (Yp_321342.1) From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 15/125 (12%)
Query: 4   ATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKL 63
           ATLY+  +S        LL     Q      E +LD+GCG G +T K     + +S  ++
Sbjct: 32  ATLYQDKHSFVWQYGEDLLQLLNPQ----PGEFILDLGCGTGQLTEK-----IAQSGAEV 82
Query: 64  VGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQA 123
           +G D +   I+ A+ ++  P L F VA+  +  ++       + +FS   LHWV++   A
Sbjct: 83  LGTDNAATXIEKARQNY--PHLHFDVADARNFRVDK----PLDAVFSNAXLHWVKEPEAA 136
Query: 124 ISNIY 128
           I++I+
Sbjct: 137 IASIH 141

>pdb|3DTN|A Chain A, Crystal Structure Of Putative Methyltransferase-mm_2633 From Methanosarcina Mazei . Length = 234

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 32  TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH-HTNPKLEFVVA 90
           T+N  +LD+G G G + S  L+   P++   LV  D+S  M++ AKN    N K++++ A
Sbjct: 43  TENPDILDLGAGTG-LLSAFLMEKYPEATFTLV--DMSEKMLEIAKNRFRGNLKVKYIEA 99
Query: 91  NIADQNLESIFLAKFNKIFSFYCLHWVQDQ 120
           + +  + E     K++ + S   +H ++D+
Sbjct: 100 DYSKYDFEE----KYDMVVSALSIHHLEDE 125

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	433
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	3e-51
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	4e-48
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	2e-46
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	2e-42
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	3e-27
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	3e-04
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	3e-26
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	9e-22
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	2e-21
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	4e-21
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	1e-20
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	2e-20
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	4e-20
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	7e-20
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	1e-19
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	2e-19
3i9f_A	170	Putative type 11 methyltransferase; structural gen	2e-19
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	7e-19
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	2e-18
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	3e-18
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	3e-18
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	7e-18
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	1e-17
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	4e-17
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	4e-17
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	6e-17
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	7e-17
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	8e-17
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	2e-16
3ege_A	261	Putative methyltransferase from antibiotic biosyn	2e-16
1xxl_A	239	YCGJ protein; structural genomics, protein structu	4e-16
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	4e-16
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	5e-16
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	5e-16
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	7e-16
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	8e-16
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	2e-15
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	3e-15
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	4e-15
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	8e-15
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	1e-14
3ocj_A	305	Putative exported protein; structural genomics, PS	2e-14
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	3e-14
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	4e-14
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	4e-14
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	4e-14
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	7e-14
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	7e-13
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	2e-11
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	2e-11
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	4e-11
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	5e-11
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	5e-11
3cc8_A	230	Putative methyltransferase; structural genomics, j	6e-11
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	1e-10
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	2e-10
3f4k_A	257	Putative methyltransferase; structural genomics, P	3e-10
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	3e-10
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	5e-10
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	5e-10
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	7e-10
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	2e-09
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	2e-09
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	3e-09
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	4e-09
2p7i_A	250	Hypothetical protein; putative methyltransferase,	3e-08
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	5e-08
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	1e-07
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	1e-07
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	2e-07
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	3e-07
1im8_A	244	YECO; methyltransferase, adenosylhomocysteine, str	1e-06
3lcc_A	235	Putative methyl chloride transferase; halide methy	2e-06
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	3e-06
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	1e-05
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	2e-05
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	3e-05
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	3e-05
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	4e-05
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	5e-05
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	5e-05
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	9e-05
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	1e-04
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	2e-04
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	3e-04
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	5e-04
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	5e-04
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	7e-04

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} Length = 196

 Score =  170 bits (433), Expect = 3e-51
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 1/125 (0%)

Query: 176 GVIQ-VQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNI 234
           G       D+T   T + I       + D+++ D AP+ TG  DLD      L +  L++
Sbjct: 71  GATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSV 130

Query: 235 TTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPP 294
           T  +L+PGGTF+ K +       L+ +    F+NV I KP++SR  S E + +   Y   
Sbjct: 131 TPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGR 190

Query: 295 KDYVP 299
           K  V 
Sbjct: 191 KGTVK 195

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* Length = 180

 Score =  161 bits (410), Expect = 4e-48
 Identities = 39/118 (33%), Positives = 59/118 (50%)

Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
           GV  +QGD   E  +K +     D KV +V+ D AP+++G   +D      L+  AL + 
Sbjct: 63  GVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMC 122

Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRP 293
             +L PGG+FV K+F+         + +  F  V + KP SSR  S E +IV    +P
Sbjct: 123 RDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKP 180

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} Length = 191

 Score =  157 bits (400), Expect = 2e-46
 Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 3/123 (2%)

Query: 176 GVIQVQGDITKESTIKEIFSHFDD---EKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGAL 232
           GV  ++ DI KE+   +I     +   EKVD VV D    V+G+   D  +   +    +
Sbjct: 63  GVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVM 122

Query: 233 NITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYR 292
            I    L+ GG  + K F+          ++  F +  I+KP +SR SS E +I+   ++
Sbjct: 123 EIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFSSYKISKPPASRGSSSEIYIMFFGFK 182

Query: 293 PPK 295
              
Sbjct: 183 AEG 185

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} Length = 201

 Score =  147 bits (374), Expect = 2e-42
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 17/137 (12%)

Query: 176 GVIQVQGDITKE-----------------STIKEIFSHFDDEKVDLVVFDGAPDVTGLHD 218
            V  +QG+I K+                 S   ++     D+K+D+++ D A    G   
Sbjct: 64  NVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKI 123

Query: 219 LDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSR 278
            D      L +   +     +  GGT++ K++       L+T  +  F+ V   KPK+SR
Sbjct: 124 DDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGMFQLVHTTKPKASR 183

Query: 279 NSSIESFIVCQNYRPPK 295
           N S E ++VC+N+   K
Sbjct: 184 NESREIYLVCKNFLGRK 200

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score =  108 bits (271), Expect = 3e-27
 Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 15/162 (9%)

Query: 4   ATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKL 63
           A  Y      +   A  LL     Q       +  D+GCGPGN T +LL      +V+  
Sbjct: 8   AQQYLKFEDERTRPARDLL----AQVPLERVLNGYDLGCGPGNST-ELLTDRYGVNVI-- 60

Query: 64  VGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQA 123
            G+D   +M++ A +    P   F  A++A          K + +++     WV D    
Sbjct: 61  TGIDSDDDMLEKAADRL--PNTNFGKADLATWKPA----QKADLLYANAVFQWVPDHLAV 114

Query: 124 ISNIYNLLMPGGEVLLLL--NAFNPIYDLYEKLSRKPKWTEY 163
           +S + + L  GG + + +  N   P +    + +    W + 
Sbjct: 115 LSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDA 156

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 17/101 (16%)

Query: 340 HPISEMTALLQSVGFNIHHCDSNTSSYSYRTVSDLRQAL------TSVNPFLERIPSTLQ 393
            P S+    L      +    +      Y        ++      T + P+L       +
Sbjct: 168 PPPSDYFNALSPKSSRVDVWHTV-----YNHPMKDADSIVEWVKGTGLRPYLAAAGEENR 222

Query: 394 DDFMNDCIDVVFNGNLREVFPLDEQ-TVRFNYTQIIVFARK 433
           + F+ D         +   +P      +   + ++ V A K
Sbjct: 223 EAFLADYTRR-----IAAAYPPMADGRLLLRFPRLFVVAVK 258

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score =  105 bits (265), Expect = 3e-26
 Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 15/136 (11%)

Query: 4   ATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKL 63
           ATLY+  +S        LL            E +LD+GCG G +T K+      +S  ++
Sbjct: 32  ATLYQDKHSFVWQYGEDLL----QLLNPQPGEFILDLGCGTGQLTEKIA-----QSGAEV 82

Query: 64  VGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQA 123
           +G D +  MI+ A+ ++  P L F VA+  +  ++       + +FS   LHWV++   A
Sbjct: 83  LGTDNAATMIEKARQNY--PHLHFDVADARNFRVD----KPLDAVFSNAMLHWVKEPEAA 136

Query: 124 ISNIYNLLMPGGEVLL 139
           I++I+  L  GG  + 
Sbjct: 137 IASIHQALKSGGRFVA 152

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 92.8 bits (230), Expect = 9e-22
 Identities = 24/140 (17%), Positives = 51/140 (36%), Gaps = 10/140 (7%)

Query: 35  ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD 94
             ++D  CG G  T  L      +   +++GLDVS + ++ A   +T   + + + +   
Sbjct: 58  LPLIDFACGNGTQTKFLS-----QFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLV 112

Query: 95  QNLESIFLAKF--NKIFSFYCLHWV--QDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDL 150
               +   ++     I+     H +  + +     ++  LL   G + L+      I D 
Sbjct: 113 PEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCI-DF 171

Query: 151 YEKLSRKPKWTEYTQVRTYR 170
           +  L  K     Y  +    
Sbjct: 172 FNSLLEKYGQLPYELLLVME 191

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 91.9 bits (228), Expect = 2e-21
 Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 4   ATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKL 63
           + +  +   ++       L + +  F     ++VLD+GCG G         +  K V+  
Sbjct: 18  SQMPRSKEGLKAAGEWHELKKMLPDFN---QKTVLDLGCGFGWH-CIYAAEHGAKKVL-- 71

Query: 64  VGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQA 123
            G+D+S  M+  AK   T+P + +    I D  +E      +N + S   LH++      
Sbjct: 72  -GIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEP---DAYNVVLSSLALHYIASFDDI 127

Query: 124 ISNIYNLLMPGGEVLLLLNAFNPIY 148
              +Y  L   G    + +  +P++
Sbjct: 128 CKKVYINLKSSGS--FIFSVEHPVF 150

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 91.1 bits (226), Expect = 4e-21
 Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 34  NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIA 93
              VLDVGCG G  T KL      ++  K VG+D+S  MI+  K     P L F+  +++
Sbjct: 54  EAEVLDVGCGDGYGTYKLS-----RTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLS 108

Query: 94  DQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL--LLNAFNPIYDLY 151
               E+    +F  I +   L W ++  +A++ I  +L   G   +  L     P  + Y
Sbjct: 109 SLPFEN---EQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSY 165

Query: 152 EKLSRKPKWTEYTQVRTYRCLL----FTGVIQVQGDITKESTIKEIFSHFDDE 200
            +L  K           +  L+    F  V  +   + K    +++      +
Sbjct: 166 PRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI--GVYKRGVNEKMLGQLSTD 216

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 88.8 bits (220), Expect = 1e-20
 Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 15/152 (9%)

Query: 4   ATLYETNNSMQQLDAAKLLSQYIDQFKWTD---NESVLDVGCGPGNVTSKLLLPNLPKSV 60
           A  Y++    + +   ++ + Y D  +        +VL+ G G GN+T+KLL      + 
Sbjct: 13  AHTYDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLL-----LAG 67

Query: 61  VKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQD- 119
             + G++ S  M   AK      +      +     +        + I S Y  H + D 
Sbjct: 68  RTVYGIEPSREMRMIAKEKL-PKEFSITEGDFLSFEVP----TSIDTIVSTYAFHHLTDD 122

Query: 120 -QRQAISNIYNLLMPGGEVLLLLNAFNPIYDL 150
            +  AI+    LL  GG+++     F      
Sbjct: 123 EKNVAIAKYSQLLNKGGKIVFADTIFADQDAY 154

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 88.3 bits (219), Expect = 2e-20
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 12/126 (9%)

Query: 16  LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKH 75
           + A       I+ +    +  +LDVG G G  T  L          ++ GL+ +  +++ 
Sbjct: 24  ISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLA-----SLGHQIEGLEPATRLVEL 78

Query: 76  AKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWV--QDQRQAISNIYNLLMP 133
           A+  H  P + F    I D +       ++  + ++Y L  +   +   A+  +   +  
Sbjct: 79  ARQTH--PSVTFHHGTITDLSDSP---KRWAGLLAWYSLIHMGPGELPDALVALRMAVED 133

Query: 134 GGEVLL 139
           GG +L+
Sbjct: 134 GGGLLM 139

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* Length = 277

 Score = 88.9 bits (220), Expect = 4e-20
 Identities = 24/132 (18%), Positives = 39/132 (29%), Gaps = 10/132 (7%)

Query: 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITT 236
           V  +  +I       +I    +  K D ++ D     +         +G   +  L+   
Sbjct: 117 VQSLGWNIITFKDKTDIH-RLEPVKCDTLLCDIGESSS-----SSVTEGERTVRVLDTVE 170

Query: 237 FLLKPG-GTFVGKIFR--SRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRP 293
             L  G   F  K+      +V+      Q  F    I  P S RNS+ E + V      
Sbjct: 171 KWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPLS-RNSTHEMYYVSGARSN 229

Query: 294 PKDYVPTIMNPF 305
               V       
Sbjct: 230 VTFTVNQTSRLL 241

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 87.5 bits (217), Expect = 7e-20
 Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 13/137 (9%)

Query: 34  NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIA 93
              ++D+GCG G             S V  +GLD+S  M+  A+    +  + +  A++ 
Sbjct: 44  GLRIVDLGCGFGWFC--RWAHEHGASYV--LGLDLSEKMLARARAAGPDTGITYERADLD 99

Query: 94  DQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEK 153
             +L       F+  +S   LH+V+D  +    ++  L PGG    + +  +PIY     
Sbjct: 100 KLHLPQ---DSFDLAYSSLALHYVEDVARLFRTVHQALSPGGH--FVFSTEHPIYMAP-- 152

Query: 154 LSRKPKWTEYTQVRTYR 170
              +P W    + R   
Sbjct: 153 --ARPGWAIDAEGRRTW 167

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 86.4 bits (214), Expect = 1e-19
 Identities = 25/111 (22%), Positives = 56/111 (50%), Gaps = 10/111 (9%)

Query: 33  DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVAN 91
           +N  +LD+G G G ++   L+   P++      +D+S  M++ AKN    N K++++ A+
Sbjct: 44  ENPDILDLGAGTGLLS-AFLMEKYPEA--TFTLVDMSEKMLEIAKNRFRGNLKVKYIEAD 100

Query: 92  IADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLL 140
            +  + E     K++ + S   +H ++  D+++     Y++L   G  +  
Sbjct: 101 YSKYDFE----EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINA 147

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 84.8 bits (210), Expect = 2e-19
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 13/110 (11%)

Query: 33  DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANI 92
               +LD GCG G +   L      K    ++G D+ P +I +AK     P+  +VV ++
Sbjct: 46  RGAKILDAGCGQGRIGGYLS-----KQGHDVLGTDLDPILIDYAKQDF--PEARWVVGDL 98

Query: 93  ADQNLESIFLAKFNKIFSFYCLHWV---QDQRQAISNIYNLLMPGGEVLL 139
           +   +       F+ I S   +        +  A++NI+  L   G  ++
Sbjct: 99  SVDQISE---TDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVI 145

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 83.9 bits (208), Expect = 2e-19
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 13/118 (11%)

Query: 23  SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN 82
            +Y+          ++D GCG G     LL     +   KL  +D++   +K  K     
Sbjct: 7   EEYLPNIFEGKKGVIVDYGCGNGFYCKYLL-----EFATKLYCIDINVIALKEVKE---- 57

Query: 83  PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140
            K + V+     + +        + I      H + D++  IS +  +L   G V+++
Sbjct: 58  -KFDSVITLSDPKEIPD---NSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIII 111

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 85.5 bits (211), Expect = 7e-19
 Identities = 37/206 (17%), Positives = 75/206 (36%), Gaps = 18/206 (8%)

Query: 7   YETNNSMQQLDAAKLLSQYIDQFKWTDNE-SVLDVGCGPGNVTSKL---LLPNLPKSVVK 62
           + T +   Q    K L   I +   T +E  +L +G G G +  ++   +    P   + 
Sbjct: 25  HSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCIN 84

Query: 63  LVGLDVSPNMIKHAKNH------HTNPKLEFVVANI---ADQNLESIFLAKFNKIFSFYC 113
              ++ S   I   K          N K  +          + LE   L K++ I     
Sbjct: 85  NEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQM 144

Query: 114 LHWVQDQRQAISNIYNLLMPGGEVLLLLNAFN-PIYDLYEKLSRKPKWTEYTQVRT---- 168
           L++V+D    +   ++LL    ++L+++ + +     L++K   +    +  Q  T    
Sbjct: 145 LYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDL 204

Query: 169 YRCLLFTGVIQVQGDITKESTIKEIF 194
            + L   G+     D+     I + F
Sbjct: 205 TQMLDNLGLKYECYDLLSTMDISDCF 230

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 82.7 bits (204), Expect = 2e-18
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 12/108 (11%)

Query: 35  ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD 94
             VL++  G G  T  L          ++  LD S  MI  A  H     +EF   ++ D
Sbjct: 48  GDVLELASGTGYWTRHLS-----GLADRVTALDGSAEMIAEAGRHGL-DNVEFRQQDLFD 101

Query: 95  QNLESIFLAKFNKIFSFYCLHWVQDQRQ--AISNIYNLLMPGGEVLLL 140
              +     +++ +F  + L  V D R      ++ + + PGG V  +
Sbjct: 102 WTPD----RQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFV 145

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 82.5 bits (204), Expect = 3e-18
 Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 10/146 (6%)

Query: 17  DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHA 76
             A  ++  +      +  S+LDV CG G            K      GL++S +M+ HA
Sbjct: 25  AEASDIADLVRSRT-PEASSLLDVACGTGTHLEHFT-----KEFGDTAGLELSEDMLTHA 78

Query: 77  KNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGE 136
           +     P       ++ D  L   F A  +   S   L   ++   A+++    L PGG 
Sbjct: 79  RKR--LPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGG- 135

Query: 137 VLLLLNAFNPIYDLYEKLSRKPKWTE 162
            ++++  +       +          
Sbjct: 136 -VVVVEPWWFPETFADGWVSADVVRR 160

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 83.5 bits (206), Expect = 3e-18
 Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 8/109 (7%)

Query: 34  NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH--HTNPKLEFVVAN 91
              ++D GCG G +   +L+P LP+   K  G+D    ++  A+          EF+  +
Sbjct: 23  PVHIVDYGCGYGYLG-LVLMPLLPEG-SKYTGIDSGETLLAEARELFRLLPYDSEFLEGD 80

Query: 92  IADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140
                +E     K++       L  +      +  + + +  GG+++  
Sbjct: 81  A--TEIE--LNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICF 125

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 81.0 bits (200), Expect = 7e-18
 Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 23/130 (17%)

Query: 35  ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANI-- 92
           ES+L+VG G G    +L     P      VG++ S  M+   +     P+  +V A    
Sbjct: 38  ESLLEVGAGTGYWLRRL-----PYPQK--VGVEPSEAMLAVGRRRA--PEATWVRAWGEA 88

Query: 93  ---ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL-LNAFNPIY 148
                          F+ +  F  L +V+D  + +     +L PGG +++  L A +P  
Sbjct: 89  LPFPG--------ESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWA 140

Query: 149 DLYEKLSRKP 158
            LY +L  K 
Sbjct: 141 ALYRRLGEKG 150

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 80.3 bits (198), Expect = 1e-17
 Identities = 30/164 (18%), Positives = 64/164 (39%), Gaps = 13/164 (7%)

Query: 13  MQQLDAAKLLSQYID-QFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPN 71
           M+ +     L +++    +   +++VLD G G       + +    +   K  G+++S  
Sbjct: 2   MKTIIRQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFV----EDGYKTYGIEISDL 57

Query: 72  MIKHAKNH--HTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNI 127
            +K A+N     N KL     +I     +       + ++S+  +  ++  D ++AI  I
Sbjct: 58  QLKKAENFSRENNFKLNISKGDIRKLPFKD---ESMSFVYSYGTIFHMRKNDVKEAIDEI 114

Query: 128 YNLLMPGGEVLL-LLNAFNPIYDLYEKLSRKPKWTEYTQVRTYR 170
             +L PGG   +  L   +  Y+  EK+            +   
Sbjct: 115 KRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIH 158

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 79.9 bits (197), Expect = 4e-17
 Identities = 29/161 (18%), Positives = 55/161 (34%), Gaps = 11/161 (6%)

Query: 4   ATLYETNNSMQQLDAAKLLSQYIDQFKW--TDNESVLDVGCGPGNVTSKLLLPNLPKSVV 61
           A LY+  +  +  D  +  +      +       S+LDV CG G     L       S  
Sbjct: 19  AELYDLVHQGKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLA-----DSFG 73

Query: 62  KLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQR 121
            + GL++S +M+  A+    NP       ++ D +L   F A      S   L    +  
Sbjct: 74  TVEGLELSADMLAIARRR--NPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAELD 131

Query: 122 QAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTE 162
            A+      ++P G  ++++  +    +             
Sbjct: 132 AALERFAAHVLPDG--VVVVEPWWFPENFTPGYVAAGTVEA 170

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 79.1 bits (195), Expect = 4e-17
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 10/115 (8%)

Query: 34  NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIA 93
            E VLD+GCG G +   L         ++ VG+D    ++  A+            A +A
Sbjct: 53  PERVLDLGCGEGWLLRALA-----DRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLA 107

Query: 94  DQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIY 148
           +  +       ++ I + + L    D  + +S +  LL+PGG   L++   +P  
Sbjct: 108 EAKVP--VGKDYDLICANFALLHQ-DIIELLSAMRTLLVPGG--ALVIQTLHPWS 157

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 78.3 bits (193), Expect = 6e-17
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 19/137 (13%)

Query: 34  NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIA 93
               +++G G G     L            +G++ S  M + A+       +  +     
Sbjct: 48  EGRGVEIGVGTGRFAVPL---------KIKIGVEPSERMAEIARKRG----VFVLKGTAE 94

Query: 94  DQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL-LNAFNPIYDLYE 152
           +  L+      F+       + +V D  +A+   Y +L  GG +++  ++  + +   YE
Sbjct: 95  NLPLKD---ESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYE 151

Query: 153 KLSRKPKWTEYTQVRTY 169
           K   K K   Y   R +
Sbjct: 152 K--NKEKSVFYKNARFF 166

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 79.1 bits (195), Expect = 7e-17
 Identities = 31/187 (16%), Positives = 68/187 (36%), Gaps = 14/187 (7%)

Query: 19  AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN 78
              + +   +    +   VLD+ CG G  T +L      +   ++VGLD+   M++ A+ 
Sbjct: 27  IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELA-----ERGYEVVGLDLHEEMLRVARR 81

Query: 79  H--HTNPKLEFVVANIADQNLESIFLAKFNKIFSFY---CLHWVQDQRQAISNIYNLLMP 133
                N K+EF+  ++ +   ++    +F+ +  F+        +D R+  S +   L P
Sbjct: 82  KAKERNLKIEFLQGDVLEIAFKN----EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKP 137

Query: 134 GGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQGDITKESTIKEI 193
           GG  +     +         +  + K  E   +  +R +           + +       
Sbjct: 138 GGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKLRFKRLVQILRPNGE 197

Query: 194 FSHFDDE 200
              F  +
Sbjct: 198 VKAFLVD 204

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 79.7 bits (196), Expect = 8e-17
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 12/143 (8%)

Query: 22  LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK---- 77
             + ID++   + + ++DVGCGPG  T  L +    K   +++G D+S  MIK A+    
Sbjct: 25  FYKMIDEYHDGERKLLVDVGCGPGTAT--LQMAQELKPFEQIIGSDLSATMIKTAEVIKE 82

Query: 78  -NHHTNPKLEFVVA---NIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMP 133
            +  T   + F ++   +      +S+   K + I +  C HW  D  +   + Y  L  
Sbjct: 83  GSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRK 141

Query: 134 GGEVLLLLNAFNPIYDLYEKLSR 156
            G  + +    +PI+  Y +   
Sbjct: 142 DG-TIAIWGYADPIFPDYPEFDD 163

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 76.9 bits (189), Expect = 2e-16
 Identities = 33/190 (17%), Positives = 72/190 (37%), Gaps = 21/190 (11%)

Query: 20  KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH 79
            LL +Y+ +        VLD+ CG G  +  L          ++VG+D+S +MI+ A+ +
Sbjct: 30  PLLMKYMKK-----RGKVLDLACGVGGFSFLLE-----DYGFEVVGVDISEDMIRKAREY 79

Query: 80  --HTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGG 135
                  +EF+V +    + E      F+ +     +   +  +  Q    +  +L P G
Sbjct: 80  AKSRESNVEFIVGDARKLSFED---KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSG 136

Query: 136 EVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQGDITKESTIKEIFS 195
                +  F  + +L  +L       +   +             V    +++ + +  F+
Sbjct: 137 ---KFIMYFTDLRELLPRLKESLVVGQKYWISKVI-PDQEERTVVIEFKSEQDSFRVRFN 192

Query: 196 HFDDEKVDLV 205
            +    V+L+
Sbjct: 193 VWGKTGVELL 202

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 77.6 bits (191), Expect = 2e-16
 Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 11/111 (9%)

Query: 32  TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVAN 91
                + D+G G G  +  L         + +  ++ S  M + A  H   P++E+    
Sbjct: 33  PKGSVIADIGAGTGGYSVALA-----NQGLFVYAVEPSIVMRQQAVVH---PQVEWFTGY 84

Query: 92  IADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN 142
             +  L        + + S   +H      ++   +  ++  G  VLL  +
Sbjct: 85  AENLALPD---KSVDGVISILAIHHFSHLEKSFQEMQRIIRDGTIVLLTFD 132

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 76.7 bits (189), Expect = 4e-16
 Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 18/149 (12%)

Query: 34  NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN---PKLEFVVA 90
              VLD+G G G+             V + +G+D +  M++ A +         + F   
Sbjct: 22  EHRVLDIGAGAGHTALAFS-----PYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQG 76

Query: 91  NIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL------LNAF 144
                         F+ I   Y  H   D R+A+  +  +L   G  LL+          
Sbjct: 77  TAESLPFPD---DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVL 133

Query: 145 NPIYDLYEKLSRKPKWTEYTQVRTYRCLL 173
           +   +   +L R P     + +  ++ + 
Sbjct: 134 DEFVNHLNRL-RDPSHVRESSLSEWQAMF 161

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 77.3 bits (190), Expect = 4e-16
 Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 9/110 (8%)

Query: 34  NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN---PKLEFVVA 90
              VL+ GCG G  T  +L  N P + +    +D+SP  ++ A+ +        ++F+ A
Sbjct: 38  GAKVLEAGCGIGAQT-VILAKNNPDAEI--TSIDISPESLEKARENTEKNGIKNVKFLQA 94

Query: 91  NIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140
           NI     E    + F+ IF  + L  +Q   +A+ ++  +L PGG + ++
Sbjct: 95  NIFSLPFED---SSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVI 141

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 76.3 bits (188), Expect = 5e-16
 Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 14/162 (8%)

Query: 13  MQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNM 72
           MQ +   + ++  ++Q +    + + D+GCG G  T  L          ++ G+D+S  M
Sbjct: 15  MQDVPYPEWVAWVLEQVE--PGKRIADIGCGTGTATLLL------ADHYEVTGVDLSEEM 66

Query: 73  IKHAKNH--HTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNL 130
           ++ A+     TN  ++F V ++ +  L     A      S   L    D +Q   +   L
Sbjct: 67  LEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARL 126

Query: 131 LMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCL 172
           L  GG   LL +  +P     E L     +  + +  +Y   
Sbjct: 127 LTDGG--KLLFDVHSP--YKMETLFNGKTYATHAEQSSYIWF 164

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 75.7 bits (186), Expect = 5e-16
 Identities = 24/145 (16%), Positives = 55/145 (37%), Gaps = 18/145 (12%)

Query: 14  QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMI 73
           ++   +  L++++ +        +L++GCG G     +L      +   +   D SP + 
Sbjct: 26  ERQPRSATLTKFLGELP--AGAKILELGCGAGYQAEAML-----AAGFDVDATDGSPELA 78

Query: 74  KHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWV--QDQRQAISNIYNLL 131
             A      P    +   +         +  ++ +++  CL  V   +    +  I+  L
Sbjct: 79  AEASRRLGRPVRTMLFHQLD-------AIDAYDAVWAHACLLHVPRDELADVLKLIWRAL 131

Query: 132 MPGGEVLLLLNAFNPIYDLYEKLSR 156
            PGG  L   +  +   +  +KL+R
Sbjct: 132 KPGG--LFYASYKSGEGEGRDKLAR 154

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 75.9 bits (187), Expect = 7e-16
 Identities = 30/184 (16%), Positives = 60/184 (32%), Gaps = 12/184 (6%)

Query: 19  AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN 78
           +  + +   +      +  LD+ CG GN+T  L              +D+S  M+  A+N
Sbjct: 24  SDFIIEKCVENN-LVFDDYLDLACGTGNLTENLC-----PKFKNTWAVDLSQEMLSEAEN 77

Query: 79  H--HTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGE 136
                  K      +I++ N+   F      + S   +    D ++    + N L  GG 
Sbjct: 78  KFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGG- 136

Query: 137 VLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQGDITKESTIKEIFSH 196
            + + +  +       ++     +        Y          V   I+      E +  
Sbjct: 137 -VFIFDINSY--YKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKR 193

Query: 197 FDDE 200
           FD+E
Sbjct: 194 FDEE 197

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 76.0 bits (187), Expect = 8e-16
 Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 17/146 (11%)

Query: 18  AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK 77
               L++ +       NE VLDV  G G+V +          V K+V  D++ +++K A+
Sbjct: 22  KGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFA-----PFVKKVVAFDLTEDILKVAR 76

Query: 78  NHHTN---PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPG 134
                    ++E+V  +            +F+ +      H   +    +S  Y +L  G
Sbjct: 77  AFIEGNGHQQVEYVQGDAEQMPFTD---ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG 133

Query: 135 GEVLLL------LNAFNPIYDLYEKL 154
           G++LL+       +AF+  Y+  EK 
Sbjct: 134 GQLLLVDNSAPENDAFDVFYNYVEKE 159

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 73.9 bits (181), Expect = 2e-15
 Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 14/109 (12%)

Query: 32  TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVAN 91
           T    VL+ GCG G   ++           +    D SP ++K A+ +   P  +    N
Sbjct: 47  TPQTRVLEAGCGHGPDAARFG-----PQAARWAAYDFSPELLKLARANA--PHADVYEWN 99

Query: 92  IADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140
              + L +   A F  I S             I  +  L  P    L +
Sbjct: 100 GKGE-LPAGLGAPFGLIVSRR------GPTSVILRLPELAAPDAHFLYV 141

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 74.6 bits (183), Expect = 3e-15
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 11/146 (7%)

Query: 4   ATLYETNNSMQQLDAAKLLSQYIDQFK-WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVK 62
           A  Y+   +     A ++ +          +    L++G G G +   L+         +
Sbjct: 9   AYAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLI-----ARGYR 63

Query: 63  LVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQ 120
            + LD    M++  +      + K++ V A+     L        + +   +  H V D 
Sbjct: 64  YIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPD---ESVHGVIVVHLWHLVPDW 120

Query: 121 RQAISNIYNLLMPGGEVLLLLNAFNP 146
            + ++    +L PGG +L   +    
Sbjct: 121 PKVLAEAIRVLKPGGALLEGWDQAEA 146

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 74.6 bits (183), Expect = 4e-15
 Identities = 29/187 (15%), Positives = 65/187 (34%), Gaps = 23/187 (12%)

Query: 4   ATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKL 63
           A  Y     +Q  D      ++  +     +  VL++  G G +T   L         ++
Sbjct: 56  ADTYRDL--IQDADGTSEAREFATRTG-PVSGPVLELAAGMGRLTFPFL-----DLGWEV 107

Query: 64  VGLDVSPNMIKHAKNH------HTNPKLEFVVANIADQNLESIFLAKFNKIFSFYC-LHW 116
             L++S +++   +            +   V  +++   L+     +F  +      ++ 
Sbjct: 108 TALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALD----KRFGTVVISSGSINE 163

Query: 117 V--QDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLF 174
           +   D+R   +++   L PGG    LL+         E L RK +    +  R    +  
Sbjct: 164 LDEADRRGLYASVREHLEPGG--KFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRH 221

Query: 175 TGVIQVQ 181
               ++Q
Sbjct: 222 LPAEEIQ 228

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 73.4 bits (180), Expect = 8e-15
 Identities = 29/143 (20%), Positives = 49/143 (34%), Gaps = 15/143 (10%)

Query: 22  LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT 81
           +   + +       +VLD+GCG G  T       LP+      GLDVS   IK A   + 
Sbjct: 74  IVAQLRERLDDKATAVLDIGCGEGYYT-HAFADALPEITT--FGLDVSKVAIKAAAKRY- 129

Query: 82  NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141
            P++ F VA+              + I   Y     ++  +        + PGG V+   
Sbjct: 130 -PQVTFCVASSHRLPFSD---TSMDAIIRIYAPCKAEELARV-------VKPGGWVITAT 178

Query: 142 NAFNPIYDLYEKLSRKPKWTEYT 164
                + +L   +  +       
Sbjct: 179 PGPRHLMELKGLIYNEVHLHAPH 201

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 71.7 bits (176), Expect = 1e-14
 Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 18/158 (11%)

Query: 3   KATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVK 62
           K    +  + ++  D  K+L     +F   +  +VLDVG G G       L  +     K
Sbjct: 11  KIKKLDDPSRLELFDPEKVL----KEFGLKEGMTVLDVGTGAGFYL--PYLSKMVGEKGK 64

Query: 63  LVGLDVSPNMIKHAKNHHTNPKL---EFVVANIADQNLESIFLAKFNKIFSFYCLHWVQD 119
           +  +DV   M+ +A        L   E + +      L        + IF  +  H + +
Sbjct: 65  VYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD---NTVDFIFMAFTFHELSE 121

Query: 120 QRQAISNIYNLLMPGGEVLLL------LNAFNPIYDLY 151
             + +  +  +  P   + ++       +   P  ++Y
Sbjct: 122 PLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVY 159

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 72.8 bits (178), Expect = 2e-14
 Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 13/113 (11%)

Query: 34  NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMI----KHAKNHHTNPKLEFVV 89
              V  V CG  +    L L       V+LVG+D  P  +    + A  H    ++    
Sbjct: 119 GCVVASVPCGWMSEL--LALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHR 176

Query: 90  ANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAIS---NIYNLLMPGGEVLL 139
            +    +        ++ + S     +  D  +        +  L PGG ++ 
Sbjct: 177 QDAWKLDTR----EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVT 225

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 70.6 bits (173), Expect = 3e-14
 Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 14/135 (10%)

Query: 36  SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMI----KHAKNHHTNPKLEFVVAN 91
           + +D+G GPG ++  L      +S   +  LD S +M     K+  + + N +++ V  +
Sbjct: 46  TCIDIGSGPGALSIALA----KQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGD 101

Query: 92  IADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL-LNAFNPIYDL 150
           + +  +E       + I S   + + +D   A   IY +L  GG+  +        + D 
Sbjct: 102 VHNIPIED---NYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDS 158

Query: 151 Y--EKLSRKPKWTEY 163
              E + + P W E+
Sbjct: 159 ISAEMIRKNPDWKEF 173

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 71.6 bits (175), Expect = 4e-14
 Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 22/176 (12%)

Query: 4   ATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKL 63
           A +++      +   A+  +  +   +      VLDV CG G  +  L+     +    +
Sbjct: 28  ARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLV-----EEGFSV 82

Query: 64  VGLDVSPNMIKHAKNHHTNPKLE-------FVVANIADQNLESIFLAKFNKIF----SFY 112
             +D S  M+K+A     N + E          AN    + +      F+ +     SF 
Sbjct: 83  TSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFA 142

Query: 113 CLHWVQ----DQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYT 164
            L   +    + R A+ NI +++ PGG  LL+++  N  Y L    +   K   Y 
Sbjct: 143 HLPDSKGDQSEHRLALKNIASMVRPGG--LLVIDHRNYDYILSTGCAPPGKNIYYK 196

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 72.4 bits (177), Expect = 4e-14
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 16/120 (13%)

Query: 34  NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH-----------HTN 82
             +VLD+GCG G      L   L     K++G+D+  N ++ A+ +            + 
Sbjct: 84  GATVLDLGCGTGRDV--YLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSR 141

Query: 83  PKLEFVVANI---ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
             + F+   I   A    E +  +  + + S    +   ++      I+ +L  GGE+  
Sbjct: 142 SNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYF 201

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 70.9 bits (173), Expect = 4e-14
 Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 10/133 (7%)

Query: 24  QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNP 83
            +I           LD G G G +T  LL   L  +      L+   +M++ AK      
Sbjct: 84  NFIASLPGHGTSRALDCGAGIGRITKNLLTK-LYATT---DLLEPVKHMLEEAKRELAGM 139

Query: 84  KL-EFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQ--RQAISNIYNLLMPGGEVLLL 140
            + +F++A++    L       ++ I   +   ++ D    +   +    L P G +   
Sbjct: 140 PVGKFILASMETATLPP---NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFK 196

Query: 141 LNAFNPIYDLYEK 153
            N       L +K
Sbjct: 197 ENCSTGDRFLVDK 209

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 70.3 bits (172), Expect = 7e-14
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 13/123 (10%)

Query: 37  VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN 96
           VLD+G G G  +  L      +   ++V +D S  M++ A+          V A   D  
Sbjct: 58  VLDLGGGTGKWSLFLQ-----ERGFEVVLVDPSKEMLEVAREKG---VKNVVEAKAEDLP 109

Query: 97  LESIFLAKFNKIFSF-YCLHWVQDQRQAISNIYNLLMPGGEVLLL-LNAFNPIYDLYEKL 154
             S     F  + +    L +V+++ +A S I  +L+P G ++    N +  +  + EK 
Sbjct: 110 FPS---GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKD 166

Query: 155 SRK 157
           +  
Sbjct: 167 AWD 169

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 67.8 bits (165), Expect = 7e-13
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 14/128 (10%)

Query: 34  NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKL----EFVV 89
            +SVLD+GCG G    K         + +  G+D++   I  A+    N K      F  
Sbjct: 65  GDSVLDLGCGKGGDLLKYER----AGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRA 120

Query: 90  ANIADQNLESIFLAKFNKIFSFYCLHWV----QDQRQAISNIYNLLMPGGEVLLLLNAFN 145
            +   ++++     +F+ I S +  H+     +    A  NI   L PGG  ++ + + +
Sbjct: 121 QDSYGRHMDLGK--EFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRD 178

Query: 146 PIYDLYEK 153
            I + Y++
Sbjct: 179 VILERYKQ 186

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 13/109 (11%)

Query: 35  ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIA 93
            + L++GC  G          L     +L  +DV P  I  A         + +   +I 
Sbjct: 53  SNGLEIGCAAG-----AFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDIL 107

Query: 94  DQNLESIFLAKFNKIFSFYCLHWVQDQ---RQAISNIYNLLMPGGEVLL 139
             +        F+ I     L++++D    R AI N+  +L PGG ++ 
Sbjct: 108 QFSTA----ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVF 152

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.6 bits (159), Expect = 1e-11
 Identities = 80/530 (15%), Positives = 144/530 (27%), Gaps = 171/530 (32%)

Query: 14  QQLDAAKLLSQYIDQFK--WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPN 71
           +Q   + +   YI+Q    + DN+          NV+       L +    L+ L  + N
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVF-----AKYNVSRLQPYLKLRQ---ALLELRPAKN 152

Query: 72  MIKHA-----KNHHTNPKLEFVVANIA--DQNLESIFLAKFNKIFSFYCLHWV------- 117
           ++        K           VA        ++        KIF      W+       
Sbjct: 153 VLIDGVLGSGKT---------WVALDVCLSYKVQCKM---DFKIF------WLNLKNCNS 194

Query: 118 -QDQRQAISNIYNLLMPGGEVLL--LLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLF 174
            +   + +  +   + P          N    I+ +  +L R  K   Y       CLL 
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-----NCLL- 248

Query: 175 TGVIQVQGDITKESTIKEIFSHFDDE-KV-----DLVVFDGAPDVTGLH-DLDEHLQGL- 226
                V  ++       + ++ F+   K+        V D     T  H  LD H   L 
Sbjct: 249 -----VLLNVQN----AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 227 ------LLIGALNITTFLLKP----GGTFVGKIF------------RSRNV--------- 255
                 LL+  L+     L             I               ++V         
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 256 -VCLET-----------KFQIFFENVSIAKPKS------SRNSSIESFIV---CQNY--- 291
              L             +  +F  +  I  P              +  +V      Y   
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHI--PTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 292 -RPPKDYVPTIMNPFTEITGAQWSDY------VSSLSESNKKDVARFISP---------- 334
            + PK+   +I + + E+     ++Y      V   +     D    I P          
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 335 -YHHSKHPISEMTALLQSVGFN-------IHHCDS--NTSSYSYRTVSDLR---QALTSV 381
            +H       E   L + V  +       I H  +  N S     T+  L+     +   
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537

Query: 382 NPFLERIPSTLQDDFMNDCIDVVFNGNLREVFPLDEQTVRFNYTQIIVFA 431
           +P  ER+ + +  DF+                  +E  +   YT ++  A
Sbjct: 538 DPKYERLVNAIL-DFLPKI---------------EENLICSKYTDLLRIA 571

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 3e-09
 Identities = 60/429 (13%), Positives = 116/429 (27%), Gaps = 121/429 (28%)

Query: 75  HAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQ-RQAISN-----IY 128
           H  +HH +   E        +++ S+F   F   F       VQD  +  +S      I 
Sbjct: 1   HHHHHHMD--FETGEHQYQYKDILSVFEDAFVDNFDCK---DVQDMPKSILSKEEIDHII 55

Query: 129 NLLMPGGEVLLLL----------------NAFNPIYD-LYEKLSRKPKWTE--YTQVRTY 169
                    L L                       Y  L   +  + +            
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 170 RCLLFTGV-IQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLL 228
           R  L+    +  + ++++     ++                      L +L    + +L+
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKL-------------------RQALLELRPA-KNVLI 155

Query: 229 IGALNITTFLLKPGGTFVGKIFRSRNV----VCLETKFQIFFEN----VSIAKPKSSRNS 280
            G            G+  GK           VCL  K Q   +     +++    +S  +
Sbjct: 156 DGV----------LGS--GK-----TWVALDVCLSYKVQCKMDFKIFWLNLKN-CNSPET 197

Query: 281 SIE-----SFIVCQNYRPPKDYVPTIMNPFTEITGA-----QWSDYVSSL--------SE 322
            +E      + +  N+    D+   I      I        +   Y + L        ++
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 323 --------------SNKKDVARFISPYHHSKHPISEMTALLQSVGFNIHHCDSNTSSYSY 368
                         +  K V  F+S    +   +        S+        S    Y  
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH-----SMTLTPDEVKSLLLKYLD 312

Query: 369 RTVSDLRQALTSVNPF-LERIPSTLQDDF-MNDCIDVVFNGNLREVF-----PLDEQTVR 421
               DL + + + NP  L  I  +++D     D    V    L  +       L+    R
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 422 FNYTQIIVF 430
             + ++ VF
Sbjct: 373 KMFDRLSVF 381

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 62.6 bits (152), Expect = 2e-11
 Identities = 21/138 (15%), Positives = 50/138 (36%), Gaps = 18/138 (13%)

Query: 24  QYI-DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH--- 79
             +    K ++   V+D+GCG GN+   LL  +      ++ G+DVS   ++ A+     
Sbjct: 19  NGVVAALKQSNARRVIDLGCGQGNLLKILLKDS---FFEQITGVDVSYRSLEIAQERLDR 75

Query: 80  -----HTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQA--ISNIYNLLM 132
                +   +L+ +   +  Q+        ++       +  +   R       ++    
Sbjct: 76  LRLPRNQWERLQLIQGALTYQDKR---FHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQ 132

Query: 133 PGGEVLLLLNA-FNPIYD 149
           P   ++   N  +N  + 
Sbjct: 133 PKIVIVTTPNIEYNVKFA 150

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 62.3 bits (151), Expect = 2e-11
 Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 17/125 (13%)

Query: 35  ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH--------HTNPKLE 86
           + V+D+GCG GN+ S LL     KS  ++ G+DVS ++++ AK+             ++ 
Sbjct: 31  KKVIDLGCGEGNLLSLLLKD---KSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRIS 87

Query: 87  FVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQA--ISNIYNLLMPGGEVLLLLNA- 143
              +++  ++      + ++       +  + + R       ++    P   ++   N  
Sbjct: 88  LFQSSLVYRDKR---FSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKE 144

Query: 144 FNPIY 148
           +N  Y
Sbjct: 145 YNFHY 149

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 61.3 bits (149), Expect = 4e-11
 Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 12/143 (8%)

Query: 23  SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN 82
           S+ ++  K       LD+GCG G  +  L       +   +   D +   I + +   + 
Sbjct: 22  SEVLEAVKVVKPGKTLDLGCGNGRNSLYLA-----ANGYDVDAWDKNAMSIANVERIKSI 76

Query: 83  PKLEFVVANIADQNLESI-FLAKFNKIFSFYCLHWVQDQR--QAISNIYNLLMPGGEVLL 139
             L+ +   + D  L ++ F  +++ I S   L +++ +     I+N+     PGG    
Sbjct: 77  ENLDNLHTRVVD--LNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGG--YN 132

Query: 140 LLNAFNPIYDLYEKLSRKPKWTE 162
           L+ A     D    +     + E
Sbjct: 133 LIVAAMDTADYPCTVGFPFAFKE 155

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313

 Score = 62.7 bits (151), Expect = 5e-11
 Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 23/167 (13%)

Query: 20  KLLSQYIDQFKWTD--NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK 77
            L+ +++++ +     + +VLD+GCG G    K         + KLV  D++   +K  +
Sbjct: 19  VLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGR----INKLVCTDIADVSVKQCQ 74

Query: 78  NHHTN----------PKLEFVVANIADQNLESIFLAK---FNKIFSFYCLHWVQDQ---- 120
             + +             EF+ A+ + + L   F      F+     +  H+  +     
Sbjct: 75  QRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQA 134

Query: 121 RQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVR 167
              + N    L PGG  +        +    E    +    E   V+
Sbjct: 135 DMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVK 181

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 61.3 bits (149), Expect = 5e-11
 Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 25/135 (18%)

Query: 34  NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH--------HTNPKL 85
           ++ +LD+GCG G ++ +L           + G+D++   I+ A+           T  K 
Sbjct: 31  DDEILDIGCGSGKISLELA-----SKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKA 85

Query: 86  EFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQR---QAISNIYNLLMPGGEVLLL-- 140
           EF V N +  +      + F+       L  V D +   + I  ++ +L PG  + L+  
Sbjct: 86  EFKVENASSLSFHD---SSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF 142

Query: 141 ----LNAFNPIYDLY 151
                        L+
Sbjct: 143 GQNWHLKLYRKRYLH 157

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 61.3 bits (149), Expect = 6e-11
 Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 11/115 (9%)

Query: 25  YIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPK 84
            +   K  + + VLD+GC  G      L   + ++  ++ G++  P   + AK       
Sbjct: 25  LLKHIKK-EWKEVLDIGCSSG-----ALGAAIKENGTRVSGIEAFPEAAEQAKEK----- 73

Query: 85  LEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
           L+ VV    +         +F+ +     L  + D    I  +   +   G +L 
Sbjct: 74  LDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILA 128

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 62.6 bits (151), Expect = 1e-10
 Identities = 24/152 (15%), Positives = 57/152 (37%), Gaps = 18/152 (11%)

Query: 24  QYIDQF-KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH--- 79
           +Y  +  + +   +++D GCG G++   LL  + P S+  ++G+D+SP  +  A      
Sbjct: 711 EYALKHIRESSASTLVDFGCGSGSLLDSLL--DYPTSLQTIIGVDISPKGLARAAKMLHV 768

Query: 80  ------HTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQA--ISNIYNLL 131
                            +I + +     L   +       +  +++ +       + +L 
Sbjct: 769 KLNKEACNVKSATLYDGSILEFDSR---LHDVDIGTCLEVIEHMEEDQACEFGEKVLSLF 825

Query: 132 MPGGEVLLLLNA-FNPIYDLYEKLSRKPKWTE 162
            P   ++   N  FN I       +++   +E
Sbjct: 826 HPKLLIVSTPNYEFNTILQRSTPETQEENNSE 857

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 58.7 bits (142), Expect = 2e-10
 Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 15/143 (10%)

Query: 6   LYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVG 65
            +  +  +   +    L    +Q        +L +  G G       L +L   V     
Sbjct: 5   RFSQSEYVYGTEPNDFLVSVANQIP---QGKILCLAEGEGRNA--CFLASLGYEV---TA 56

Query: 66  LDVSPNMIKHAKNH--HTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQA 123
           +D S   +  AK        K+  V +N+AD ++ +     +  I S +C      ++Q 
Sbjct: 57  VDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVA---DAWEGIVSIFCHLPSSLRQQL 113

Query: 124 ISNIYNLLMPGGEVLLLLNAFNP 146
              +Y  L PGG  + +L  F P
Sbjct: 114 YPKVYQGLKPGG--VFILEGFAP 134

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 59.5 bits (144), Expect = 3e-10
 Identities = 19/112 (16%), Positives = 51/112 (45%), Gaps = 12/112 (10%)

Query: 32  TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIK----HAKNHHTNPKLEF 87
           TD+  + D+GCG G   +  L   +   +    G+D+ P+ I+    +A   +   +++ 
Sbjct: 45  TDDAKIADIGCGTG-GQTLFLADYVKGQI---TGIDLFPDFIEIFNENAVKANCADRVKG 100

Query: 88  VVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
           +  ++ +   ++    + + I+S   ++ +  +R  ++     L  GG + +
Sbjct: 101 ITGSMDNLPFQN---EELDLIWSEGAIYNIGFER-GMNEWSKYLKKGGFIAV 148

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 59.3 bits (143), Expect = 3e-10
 Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 12/131 (9%)

Query: 21  LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH 80
           L     +    T     LD G G G +T +LLLP L + V     +D++ + +  AK + 
Sbjct: 67  LQRFLREGPNKTGTSCALDCGAGIGRITKRLLLP-LFREVD---MVDITEDFLVQAKTYL 122

Query: 81  TNPKL---EFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQ--RQAISNIYNLLMPGG 135
                    +    + D   E      ++ I+  + +  + DQ   + +      L P G
Sbjct: 123 GEEGKRVRNYFCCGLQDFTPEP---DSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNG 179

Query: 136 EVLLLLNAFNP 146
            +++  N    
Sbjct: 180 IIVIKDNMAQE 190

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 58.5 bits (141), Expect = 5e-10
 Identities = 23/137 (16%), Positives = 50/137 (36%), Gaps = 28/137 (20%)

Query: 20  KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH 79
            LL   +        + +L +GCG   ++ +L L         +  +D S  ++   +  
Sbjct: 34  ALLEPELRP-----EDRILVLGCGNSALSYELFL----GGFPNVTSVDYSSVVVAAMQAC 84

Query: 80  HTN-PKLEFVVANIADQNLESIFLAKFNKIFSFYCLH---------------WVQDQRQA 123
           + + P+L +   ++   +  S   A F+ +     L                 V    Q 
Sbjct: 85  YAHVPQLRWETMDVRKLDFPS---ASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQV 141

Query: 124 ISNIYNLLMPGGEVLLL 140
           +S +  +L+PGG  + +
Sbjct: 142 LSEVSRVLVPGGRFISM 158

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 58.7 bits (142), Expect = 5e-10
 Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 12/112 (10%)

Query: 32  TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMI----KHAKNHHTNPKLEF 87
           T+   + D+GCG G   + +L  ++   V    GLD     I    ++A+      ++  
Sbjct: 45  TEKSLIADIGCGTG-GQTMVLAGHVTGQV---TGLDFLSGFIDIFNRNARQSGLQNRVTG 100

Query: 88  VVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
           +V ++ D    +    + + I+S   ++ +  +R  ++     L  GG + +
Sbjct: 101 IVGSMDDLPFRN---EELDLIWSEGAIYNIGFER-GLNEWRKYLKKGGYLAV 148

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 58.6 bits (142), Expect = 7e-10
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 11/112 (9%)

Query: 32  TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----NPKLEF 87
              + VLDVGCG G    +L         V++ G+ +S   +  A    T      ++ F
Sbjct: 60  RSGDRVLDVGCGIGKPAVRL----ATARDVRVTGISISRPQVNQANARATAAGLANRVTF 115

Query: 88  VVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
             A+  D   E    A F+ +++   LH + D+ +A+  +  +L PGG V +
Sbjct: 116 SYADAMDLPFED---ASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAI 164

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 57.3 bits (138), Expect = 2e-09
 Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 12/116 (10%)

Query: 35  ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMI----------KHAKNHHTNPK 84
           E +L++GCG G+++   +L +   S   + G+D++               H        +
Sbjct: 45  EKILEIGCGQGDLS--AVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDR 102

Query: 85  LEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140
           L          +L  I    F+++   + L +            N+      V + 
Sbjct: 103 LTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVA 158

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 15/122 (12%)

Query: 20  KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH 79
             L +YI  FK      VLD+GCG G       L    +  ++ +G+D++ +MIK  +  
Sbjct: 30  ARLRRYIPYFK--GCRRVLDIGCGRGE-----FLELCKEEGIESIGVDINEDMIKFCEG- 81

Query: 80  HTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCL-H-WVQDQRQAISNIYNLLMPGGEV 137
               K   V ++ A + L+S+     + +   + + H   +   + +S  Y+ +     +
Sbjct: 82  ----KFNVVKSD-AIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYI 136

Query: 138 LL 139
           ++
Sbjct: 137 VI 138

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 56.8 bits (137), Expect = 3e-09
 Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 11/110 (10%)

Query: 34  NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKL----EFVV 89
               LD+G G G     L+     K  V +  L+++P   K  + ++    L        
Sbjct: 83  QAKGLDLGAGYGGAARFLVR----KFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKY 138

Query: 90  ANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
            +  +   E      ++ I+S        D+ +       +L P G + +
Sbjct: 139 GSFLEIPCED---NSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAI 185

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 56.3 bits (136), Expect = 4e-09
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 15/129 (11%)

Query: 15  QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIK 74
            L+A K +   +   +  +N  VLD+G G G     + +    K      G+D+  N++ 
Sbjct: 40  GLEATKKI---LSDIELNENSKVLDIGSGLG--GGCMYINE--KYGAHTHGIDICSNIVN 92

Query: 75  HA-KNHHTNPKLEFVVANIADQNLESIFLAKFNKIFS---FYCLHWVQDQRQAISNIYNL 130
            A +    N K+ F   +I  +         F+ I+S      L  ++++ +     Y  
Sbjct: 93  MANERVSGNNKIIFEANDILTKEFPE---NNFDLIYSRDAILALS-LENKNKLFQKCYKW 148

Query: 131 LMPGGEVLL 139
           L P G +L+
Sbjct: 149 LKPTGTLLI 157

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 19/145 (13%), Positives = 45/145 (31%), Gaps = 21/145 (14%)

Query: 30  KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVV 89
            +    ++L++G   G          L +    +  ++ S   I HA+       + ++ 
Sbjct: 39  PFFRPGNLLELGSFKG-----DFTSRLQEHFNDITCVEASEEAISHAQG-RLKDGITYIH 92

Query: 90  ANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIY-NLLMPGGEVLL--------- 139
           +   D  L      +++ I   + L  + D    +  I  + L  GG + L         
Sbjct: 93  SRFEDAQLPR----RYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVS 148

Query: 140 -LLNAFNPIYDLYEKLSRKPKWTEY 163
             +     I      ++       +
Sbjct: 149 RQIAVKMGIISHNSAVTEAEFAHGH 173

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302

 Score = 53.2 bits (127), Expect = 5e-08
 Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 23/137 (16%)

Query: 21  LLSQYIDQFKWTDNE--SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN 78
           L+S Y  +    D+    VL +  G G    K         +  LV  D   + I     
Sbjct: 34  LISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGE----IALLVATDPDADAIARGNE 89

Query: 79  HHTNPKL-------------EFVVANIADQNLESIFL-AKFNKIFSFYCLHWV---QDQR 121
            +                  E + ++    ++  +F   KFN I   + +H+    +   
Sbjct: 90  RYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYA 149

Query: 122 QAISNIYNLLMPGGEVL 138
             ++N+  L   GG+VL
Sbjct: 150 TVMNNLSELTASGGKVL 166

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 20/134 (14%)

Query: 18  AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK 77
           +   L++ +      D   V+D   G GN T+ L          K+   DV    +    
Sbjct: 12  SHDFLAEVL-----DDESIVVDATMGNGNDTAFLA-----GLSKKVYAFDVQEQALGKTS 61

Query: 78  NH---HTNPKLEFVVA---NIADQNLESIFLAKFNKIF----SFYCLHWVQDQRQAISNI 127
                      E ++    N+     E I  A FN  +        +       +AI  I
Sbjct: 62  QRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKI 121

Query: 128 YNLLMPGGEVLLLL 141
            + L  GG + +++
Sbjct: 122 LDRLEVGGRLAIMI 135

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 13/119 (10%)

Query: 34  NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK----NHHTNPKLEFVV 89
            ++V+D  CG GN T    L +L     ++ G D+    I +      + +   ++  + 
Sbjct: 23  GDTVVDATCGNGNDT--AFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIK 80

Query: 90  ANIADQNL---ESIFLAKFNKIFSFYCLH----WVQDQRQAISNIYNLLMPGGEVLLLL 141
               + +      +    FN  +     H      +   QA+S    LL+ GG + +++
Sbjct: 81  DGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI 139

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 51.7 bits (123), Expect = 2e-07
 Identities = 22/162 (13%), Positives = 58/162 (35%), Gaps = 21/162 (12%)

Query: 1   MHKAT-LYETNNSMQQLDAAKLLSQY-------IDQFKWTDNESVLDVGCGPGNVTSKLL 52
           M KA  + E+++  + L +     +Y           ++   E  + +G GP  +T  +L
Sbjct: 82  MEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTG-IL 140

Query: 53  LPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFY 112
           L ++    V    +++ P++ + ++       L     N+   +   I   +F+ +    
Sbjct: 141 LSHVYGMRV--NVVEIEPDIAELSRKV--IEGLGVDGVNVITGDETVIDGLEFDVLMV-- 194

Query: 113 CLHWVQDQRQAISNIYNLLMPGGEVLL-----LLNAFNPIYD 149
                + +R+   NI+  +     ++      +         
Sbjct: 195 -AALAEPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVS 235

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 50.7 bits (121), Expect = 3e-07
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 15/132 (11%)

Query: 23  SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH--H 80
              +D  K      VLD+GCG G  +  L L  L   V      D + N I         
Sbjct: 110 GDVVDAAKIISPCKVLDLGCGQGRNS--LYLSLLGYDV---TSWDHNENSIAFLNETKEK 164

Query: 81  TNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQR--QAISNIYNLLMPGGEVL 138
            N  +   + +I   N++      ++ I S     ++  +R    I N+      GG   
Sbjct: 165 ENLNISTALYDINAANIQ----ENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGG--Y 218

Query: 139 LLLNAFNPIYDL 150
            L+ A     D+
Sbjct: 219 NLIVAAMSTDDV 230

>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244

 Score = 48.8 bits (115), Expect = 1e-06
 Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 4/116 (3%)

Query: 22  LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT 81
               + +   T + +V D+GC  G  T      N+ +  VK++G+D S  M++  + H  
Sbjct: 47  AIGMLAERFVTADSNVYDLGCSRGAAT-LSARRNINQPNVKIIGIDNSQPMVERCRQHIA 105

Query: 82  NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHW--VQDQRQAISNIYNLLMPGG 135
               E  V  + +           + +   + L +   +D+   ++ IY  L P G
Sbjct: 106 AYHSEIPVEILCNDIRHVEI-KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNG 160

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)

Query: 17  DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHA 76
            A  L+   +D          L  GCG G+    + + +  + V   VGLD+S + +  A
Sbjct: 51  RATPLIVHLVDTSSLPLG-RALVPGCGGGHDV--VAMASPERFV---VGLDISESALAKA 104

Query: 77  K----NHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWV--QDQRQAISNIYNL 130
                +        FV  ++            F+ IF +     +  + +     ++Y L
Sbjct: 105 NETYGSSPKAEYFSFVKEDVFTWRPT----ELFDLIFDYVFFCAIEPEMRPAWAKSMYEL 160

Query: 131 LMPGGEVLLLLNAFNP 146
           L P G   L+   +  
Sbjct: 161 LKPDG--ELITLMYPI 174

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 47.6 bits (112), Expect = 3e-06
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 31  WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVA 90
           W     VLD+GC  G++T  +     P  +   VGLD+   +I  A+ +  +   E +  
Sbjct: 44  WFRGRDVLDLGCNVGHLTLSIACKWGPSRM---VGLDIDSRLIHSARQNIRHYLSEELRL 100

Query: 91  NIAD 94
               
Sbjct: 101 PPQT 104

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 12/110 (10%)

Query: 34  NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH----HTNPKLEFVV 89
              +LD+G G G    ++L        +   G+D+S      AK        + ++ F+ 
Sbjct: 37  GTRILDLGSGSG----EMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIH 92

Query: 90  ANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
            + A          K +                A   +   L PGG +L+
Sbjct: 93  NDAAGYVAN----EKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLI 138

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* Length = 300

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 8/109 (7%)

Query: 181 QGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLK 240
             +I K      +F     E  D ++ D     +    ++   + + ++   N   +   
Sbjct: 128 GWNIVKFKDKSNVF-TMPTEPSDTLLCDIGESSSN-PLVERD-RTMKVLE--NFERWKHV 182

Query: 241 PGGTFVGKIFR--SRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIV 287
               F  K+      +V+    + Q+ F    +  P  SRNS+ E + +
Sbjct: 183 NTENFCVKVLAPYHPDVIEKLERLQLRFGGGIVRVP-FSRNSTHEMYYI 230

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 20/137 (14%)

Query: 12  SMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLL--PNLPKSVVKLVGLDVS 69
            + Q     +     +   +    +V+D+  G G   +++L   P L          D+ 
Sbjct: 162 RLSQPMVDVVS----ELGVFARARTVIDLAGGHGTYLAQVLRRHPQL-----TGQIWDL- 211

Query: 70  PNMIKHAKNHHTNPKL----EFVVANIADQNLESIFLAKFNKIFSFYCLH-WVQDQRQAI 124
           P     A+       L    EF   N+ D           + +    CLH +   + + +
Sbjct: 212 PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE--GGAADVVMLNDCLHYFDAREAREV 269

Query: 125 -SNIYNLLMPGGEVLLL 140
             +   L+ PGG +L+L
Sbjct: 270 IGHAAGLVKPGGALLIL 286

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Length = 203

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 19/149 (12%), Positives = 41/149 (27%), Gaps = 24/149 (16%)

Query: 15  QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIK 74
           Q +  K L QY           VL   CG     S L           +VG ++S   ++
Sbjct: 4   QSEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-----HVVGAELSEAAVE 58

Query: 75  HAKN---------------HHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQD 119
                               +  P +E    +          +      +    +  +  
Sbjct: 59  RYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR--DIGHCAAFYDRAAMIALPA 116

Query: 120 --QRQAISNIYNLLMPGGEVLLLLNAFNP 146
             + + + ++  L+      LL+   ++ 
Sbjct: 117 DMRERYVQHLEALMPQACSGLLITLEYDQ 145

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275

 Score = 44.3 bits (104), Expect = 4e-05
 Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 19/141 (13%)

Query: 37  VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK----NHHTNPKLEFVVANI 92
           +L+VG G GN++S +L     K    L  ++   + +K A       +    +    ++I
Sbjct: 114 ILEVGVGSGNMSSYILYALNGKG--TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI 171

Query: 93  ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYE 152
           AD   + ++ A          +  + D    +  I +++ PG      L  F+       
Sbjct: 172 ADFISDQMYDA---------VIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVL 222

Query: 153 KLSRKPKWTEYTQVRTYRCLL 173
            L           + T   + 
Sbjct: 223 SL-SASGMHH---LETVELMK 239

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 21/141 (14%), Positives = 53/141 (37%), Gaps = 21/141 (14%)

Query: 10  NNSMQQL--DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLL--PNLPKSVVKLVG 65
             +M  +  + A+L++Q ++     +   VLD+    G     +    PN      ++ G
Sbjct: 141 AKAMSPMMANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNA-----EIFG 194

Query: 66  LDVSPNMIKHAKNHHTNPKL----EFVVANIADQNLESIFLAKFNKIFSFYCLH-WVQDQ 120
           +D   ++++ AK +     +      +  +      E  +   ++ +     LH +    
Sbjct: 195 VDW-ASVLEVAKENARIQGVASRYHTIAGSA----FEVDYGNDYDLVLLPNFLHHFDVAT 249

Query: 121 RQAI-SNIYNLLMPGGEVLLL 140
            + +   I   L   G+V++ 
Sbjct: 250 CEQLLRKIKTALAVEGKVIVF 270

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 31/158 (19%)

Query: 12  SMQQLD-AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSP 70
           S  ++D   K+L   ++      ++ +LD+GCG G +   L        V      D++ 
Sbjct: 33  SYGKVDKGTKIL---VENVVVDKDDDILDLGCGYGVIGIALA-----DEVKSTTMADINR 84

Query: 71  NMIKHAK-----NHHTNPKLEFVVANIADQNLESIFLAKFNKIFS---FYCLHWVQDQRQ 122
             IK AK     N+  N  +  V +++     E++   K+NKI +             ++
Sbjct: 85  RAIKLAKENIKLNNLDNYDIRVVHSDL----YENVKDRKYNKIITNPPI---R---AGKE 134

Query: 123 AISNI----YNLLMPGGEVLLLLNAFNPIYDLYEKLSR 156
            +  I      LL   GE+ +++        L + +  
Sbjct: 135 VLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKD 172

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 19/143 (13%), Positives = 47/143 (32%), Gaps = 19/143 (13%)

Query: 32  TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKH----AKNHHTNPKLEF 87
              E + D+G G G+V+ +  L        + + ++   + I++       +  +P++  
Sbjct: 54  RRGELLWDIGGGSGSVSVEWCLAGG-----RAITIEPRADRIENIQKNIDTYGLSPRMRA 108

Query: 88  VVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPI 147
           V    A   L    L     +F           +     ++  L PG  ++         
Sbjct: 109 VQGT-APAALAD--LPLPEAVF-----IGGGGSQALYDRLWEWLAPGTRIVANAVTLESE 160

Query: 148 YDLYEKLSRKPKWTEYTQVRTYR 170
             L +  +R     +  ++   +
Sbjct: 161 TLLTQLHARHG--GQLLRIDIAQ 181

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 9/139 (6%)

Query: 35  ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD 94
           + +++ G G G +T  L L N+     ++V  ++  +  K A  +      +  V     
Sbjct: 95  DFIVEAGVGSGALT--LFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLK 152

Query: 95  QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKL 154
              E I     + +        +    + + +    L PGG  +      N +  L+EKL
Sbjct: 153 DIYEGIEEENVDHVILD-----LPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKL 207

Query: 155 SRKPKWTEYTQVRTYRCLL 173
                   + + RT   L+
Sbjct: 208 REFKD--YFMKPRTINVLV 224

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 23/137 (16%), Positives = 47/137 (34%), Gaps = 23/137 (16%)

Query: 12  SMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLL--PNLPKSVVKLVGLDVS 69
             + L        Y     W+    VLDVG G G + + + L  P+L     +   +++ 
Sbjct: 165 CDEDLAYEAPADAY----DWSAVRHVLDVGGGNGGMLAAIALRAPHL-----RGTLVEL- 214

Query: 70  PNMIKHAKNHHTN----PKLEFVVANIADQNLESIFLAKFNKIFSFYCLH-WVQDQRQAI 124
               + A+    +     ++     +      + +     + +   + L  W  +    I
Sbjct: 215 AGPAERARRRFADAGLADRVTVAEGDF----FKPL-PVTADVVLLSFVLLNWSDEDALTI 269

Query: 125 -SNIYNLLMPGGEVLLL 140
                  L PGG +L+L
Sbjct: 270 LRGCVRALEPGGRLLVL 286

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 19/171 (11%)

Query: 9   TNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDV 68
               +Q+   A+      +Q +   ++ VLDVG G G    K+   N P  +V  V LD 
Sbjct: 8   VGKRVQEFSDAEF-----EQLRSQYDDVVLDVGTGDGKHPYKVARQN-PSRLV--VALDA 59

Query: 69  SPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCL--------HWVQDQ 120
             + ++           +  + N+      +  L   + +   + L          +   
Sbjct: 60  DKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHVLMPWGSLLRGVLGSS 119

Query: 121 RQAISNIYNLLMPGGEVLLLLNAFNPIYDLY-EKLSRKPKWTEYTQVRTYR 170
            + +  +  +  PG   L+ LN     +     ++   P+ T  +      
Sbjct: 120 PEMLRGMAAVCRPGASFLVALN--LHAWRPSVPEVGEHPEPTPDSADEWLA 168

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 14/138 (10%), Positives = 50/138 (36%), Gaps = 19/138 (13%)

Query: 11  NSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLL--PNLPKSVVKLVGLDV 68
           +      +     + +        + +LD+G   G   ++ +     +     ++  +D+
Sbjct: 160 DHFYSDQSFGKALEIVF---SHHPKRLLDIGGNTGKWATQCVQYNKEV-----EVTIVDL 211

Query: 69  SPNMIKHAKNHHTNPKL----EFVVANIADQNLESIFLAKFNKIFSFYCLH-WVQDQRQA 123
            P  ++  +                AN+ D+++   F   F+ ++    L  + +++  +
Sbjct: 212 -PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVP--FPTGFDAVWMSQFLDCFSEEEVIS 268

Query: 124 I-SNIYNLLMPGGEVLLL 140
           I + +   +    +V ++
Sbjct: 269 ILTRVAQSIGKDSKVYIM 286

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 15/141 (10%)

Query: 34  NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKH----AKNHHTNPKLEFVV 89
           N+  +DVGCG G VT +L          ++  +D +P  I       + H     +  + 
Sbjct: 34  NDVAVDVGCGTGGVTLELAGRVR-----RVYAIDRNPEAISTTEMNLQRHGLGDNVTLME 88

Query: 90  ANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYD 149
            + A + L    +   +          +   ++ +  I + L PGG +++        ++
Sbjct: 89  GD-APEALCK--IPDIDIAVVGGSGGEL---QEILRIIKDKLKPGGRIIVTAILLETKFE 142

Query: 150 LYEKLSRKPKWTEYTQVRTYR 170
             E L         T++   R
Sbjct: 143 AMECLRDLGFDVNITELNIAR 163

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 21/140 (15%), Positives = 48/140 (34%), Gaps = 29/140 (20%)

Query: 12  SMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLL--PNLPKSVVKLVGLDVS 69
           S  +     LL +     K    + ++DVG G G++++ +L   P L         L++ 
Sbjct: 173 SNAKFAIQLLLEEA----KLDGVKKMIDVGGGIGDISAAMLKHFPEL-----DSTILNL- 222

Query: 70  PNMIKHAKNHHTNPKL----EFVVANIADQNLES---IFLAKFNKIFSFYCLH-WVQDQR 121
           P  I     +     +      +  +I  ++      +             L+   +   
Sbjct: 223 PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFC--------RILYSANEQLS 274

Query: 122 QAI-SNIYNLLMPGGEVLLL 140
             +    ++ +  GG +L+L
Sbjct: 275 TIMCKKAFDAMRSGGRLLIL 294

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	433
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.94
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	99.92
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	99.91
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	99.9
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	99.86
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	99.83
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.82
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.82
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.82
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.79
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.78
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	99.77
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.74
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.74
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.74
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.73
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.72
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.71
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.68
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.68
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.68
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.68
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.66
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.66
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.66
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.66
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.66
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	99.66
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.66
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.65
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.65
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.65
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.65
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.64
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.64
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.64
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.63
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.63
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.63
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.63
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.62
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.62
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.62
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.62
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.62
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.62
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.61
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.61
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.61
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.61
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.6
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.6
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.59
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.59
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.59
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.59
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.59
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.59
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.58
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.58
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.58
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.58
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.58
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.58
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.57
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.57
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.57
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.57
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.57
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	99.57
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.57
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.56
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.56
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.55
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.55
3ocj_A	305	Putative exported protein; structural genomics, PS	99.55
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.55
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.54
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.54
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.54
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.54
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.54
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.54
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.54
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.53
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.53
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.53
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.53
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.53
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.53
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.53
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.52
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.52
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.52
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.52
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.52
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.52
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.51
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.51
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.51
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.5
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.49
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.49
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.49
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.49
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.48
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.48
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.48
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.48
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.48
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.48
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.47
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.47
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.47
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.46
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.46
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.45
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.45
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.45
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.45
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.45
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.45
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.45
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.44
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.44
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.44
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.44
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.43
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.43
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.43
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.43
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.42
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.42
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.42
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.41
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.41
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.41
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.41
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.41
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.41
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.41
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.41
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.4
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.4
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.39
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.39
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.39
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.39
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.39
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.39
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.39
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.38
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.38
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.38
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.38
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.38
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.38
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.37
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.37
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.37
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.37
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.37
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.37
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.37
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.37
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.36
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.36
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.36
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.36
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.36
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.36
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.36
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.36
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.35
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.35
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.34
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.34
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.34
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.34
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.34
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.34
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.33
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.33
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.32
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.32
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.32
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.31
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.29
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.29
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.28
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.28
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.28
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.28
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.28
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.27
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.27
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.27
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.27
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.27
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.27
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.27
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.26
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.26
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.25
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.25
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.25
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.25
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.25
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.25
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.24
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.24
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.24
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.24
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.23
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.23
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.22
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.22
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.22
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.21
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.21
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.2
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.19
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.19
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.18
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.17
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.16
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.14
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.13
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.13
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.12
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.12
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.12
2o07_A	304	Spermidine synthase; structural genomics, structur	99.12
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.11
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.11
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.1
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.1
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.09
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.08
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.08
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.08
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.08
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.07
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.06
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.05
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.04
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.03
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.01
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.01
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.0
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.0
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.98
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.97
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.94
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.94
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.93
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.92
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.92
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.92
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.9
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.84
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.84
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.84
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.84
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.83
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.82
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.82
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.81
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.79
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.79
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.71
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.7
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.67
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.66
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.62
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.61
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.6
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.6
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.57
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.55
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.47
3lkd_A	542	Type I restriction-modification system methyltrans	98.41
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.4
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.39
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.32
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.3
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.21
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.19
3khk_A	544	Type I restriction-modification system methylation	98.17
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.17
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.15
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.15
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.1
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.92
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.91
3ufb_A	530	Type I restriction-modification system methyltran	97.87
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.8
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.78
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.66
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.65
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.62
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.39
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	96.98
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.78
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.47
3trk_A	324	Nonstructural polyprotein; hydrolase; 2.40A {Chiku	96.42
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	96.03
2oo3_A	283	Protein involved in catabolism of external DNA; st	96.03
4gua_A	670	Non-structural polyprotein; viral precursor polypr	95.49
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	95.44
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.99
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	94.9
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	94.81
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	94.4
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	94.36
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	94.32
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	94.15
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	94.11
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	93.94
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	93.91
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	93.91
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	93.89
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	93.89
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	93.85
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	93.71
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	93.61
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	93.54
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	93.04
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	92.88
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	92.69
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	92.61
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	92.29
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	92.16
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	92.13
1ej6_A	1289	Lambda2; icosahedral, non-equivalence, dsRNA virus	91.94
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	91.91
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	91.76
3gms_A	340	Putative NADPH:quinone reductase; structural genom	91.72
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	91.57
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	91.54
2zig_A	297	TTHA0409, putative modification methylase; methylt	91.5
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	91.46
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	91.43
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	91.07
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	90.86
3iyl_W	1299	VP1; non-enveloped virus, membrane penetration pro	90.84
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	90.79
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	90.49
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	90.46
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	90.39
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	90.35
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	89.92
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	89.85
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	89.66
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	89.58
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	89.53
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	88.63
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	88.63
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	88.43
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	88.38
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	88.37
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	88.3
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	88.16
4eye_A	342	Probable oxidoreductase; structural genomics, niai	87.93
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	87.82
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	87.78
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	87.74
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	87.68
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	87.58
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	86.98
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	86.96
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	86.86
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	86.72
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	86.6
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	86.55
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	86.52
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	86.28
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	86.11
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	85.93
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	85.86
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	85.83
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	85.38
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	85.19
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	85.01
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	84.62
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	84.38
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	84.34
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	84.16
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	84.02
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	83.89
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	83.88
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	83.82
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	83.26
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	82.87
3c85_A	183	Putative glutathione-regulated potassium-efflux S	82.86
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	82.82
2frn_A	278	Hypothetical protein PH0793; structural genomics,	82.81
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	82.7
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	81.69
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	81.19
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	80.82
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	80.77

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.94  E-value=2.2e-26  Score=209.26  Aligned_cols=169  Identities=23%  Similarity=0.354  Sum_probs=131.2

Q ss_pred             HHHHHHHhcC-CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc
Q psy11646         21 LLSQYIDQFK-WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES   99 (433)
Q Consensus        21 ll~~l~~~l~-~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~   99 (433)
                      .|.++.+.+. .+++.+|||+|||+|.++ ..+++.    ..+|+|+|+++..        ...+++++++|+.+.... 
T Consensus        12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s-~~la~~----~~~V~gvD~~~~~--------~~~~v~~~~~D~~~~~~~-   77 (191)
T 3dou_A           12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWT-QVLNSL----ARKIISIDLQEME--------EIAGVRFIRCDIFKETIF-   77 (191)
T ss_dssp             HHHHHHHHHCCSCTTCEEEEESCTTCHHH-HHHTTT----CSEEEEEESSCCC--------CCTTCEEEECCTTSSSHH-
T ss_pred             HHHHHHHHcCCCCCCCEEEEEeecCCHHH-HHHHHc----CCcEEEEeccccc--------cCCCeEEEEccccCHHHH-
Confidence            3445666655 367899999999999999 555543    2599999999741        124677777777653211 


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeeccccCceE
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQ  179 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~pl~gv~~  179 (433)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (191)
T 3dou_A           78 --------------------------------------------------------------------------------   77 (191)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEccccccchHHHHHHhcC---CCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHH
Q psy11646        180 VQGDITKESTIKEIFSHFD---DEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVV  256 (433)
Q Consensus       180 iqgDi~~~~t~~~il~~~~---~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~  256 (433)
                                 ..+...++   ...+|+|+||++|+++|.+..|+..+..+...++..+.++|+|||.|++|+|+|.+..
T Consensus        78 -----------~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~  146 (191)
T 3dou_A           78 -----------DDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTN  146 (191)
T ss_dssp             -----------HHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHH
T ss_pred             -----------HHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHH
Confidence                       11111111   1168999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccceeEEecCCCCcccccceeEEEeeccCC
Q psy11646        257 CLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPP  294 (433)
Q Consensus       257 ~~~~~l~~~F~~v~~~KP~~sr~~s~E~~~v~~~~~~~  294 (433)
                      .+...++..|..|.+.||.|||++|+|+|+||++|+..
T Consensus       147 ~~~~~l~~~F~~v~~~kP~asR~~s~E~y~v~~~~~~~  184 (191)
T 3dou_A          147 DFIAIWRKNFSSYKISKPPASRGSSSEIYIMFFGFKAE  184 (191)
T ss_dssp             HHHHHHGGGEEEEEEECC------CCEEEEEEEEECCC
T ss_pred             HHHHHHHHhcCEEEEECCCCccCCCceEEEEEeeeccc
Confidence            99999999999999999999999999999999999854

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=99.92  E-value=1.3e-26  Score=217.82  Aligned_cols=105  Identities=18%  Similarity=0.127  Sum_probs=98.9

Q ss_pred             CCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCC--CeEEEEEee--cCCHHHHHHHHhcccceeEEecC
Q psy11646        199 DEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPG--GTFVGKIFR--SRNVVCLETKFQIFFENVSIAKP  274 (433)
Q Consensus       199 ~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~g--G~fv~Kif~--g~~~~~~~~~l~~~F~~v~~~KP  274 (433)
                      ..++|+|+|||||+ +|.+..|++++++|    +++|..+|++|  |+||+|+|+  |.+...++.+++.+|+.|.+.||
T Consensus       154 ~~~~DvVLSDmApn-sG~~~~D~~rs~~L----L~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~F~~V~~~KP  228 (282)
T 3gcz_A          154 VIPGDTLLCDIGES-SPSIAVEEQRTLRV----LNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLKHGGGLVRVP  228 (282)
T ss_dssp             CCCCSEEEECCCCC-CSCHHHHHHHHHHH----HHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHHHCCEEECCT
T ss_pred             CCCcCEEEecCccC-CCChHHHHHHHHHH----HHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHhcCCEEEEcC
Confidence            45799999999999 99999999999998    99999999999  999999999  99999999999999999999999


Q ss_pred             CCCcccccceeEEEeeccCCCCCCCCccCcccccc
Q psy11646        275 KSSRNSSIESFIVCQNYRPPKDYVPTIMNPFTEIT  309 (433)
Q Consensus       275 ~~sr~~s~E~~~v~~~~~~~~~~~~~~~~~~~~~~  309 (433)
                       |||++|+|+|+||++...+.+++|.++.+++...
T Consensus       229 -aSR~~S~E~Y~V~~~r~n~~~~v~~~s~~l~~r~  262 (282)
T 3gcz_A          229 -LSRNSTHEMYWVSGTRTDVVGTVSNVSRLLTRRM  262 (282)
T ss_dssp             -TSCTTCCCEEEETTCCCCSHHHHHHHHHHHHHHH
T ss_pred             -CCcccCcceeEEEecCCCccchHHHHHHHHHHHH
Confidence             9999999999999999999999998888777543

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=99.91  E-value=9.7e-26  Score=211.65  Aligned_cols=105  Identities=19%  Similarity=0.118  Sum_probs=98.7

Q ss_pred             CCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCC-CeEEEEEee--cCCHHHHHHHHhcccceeEEecCC
Q psy11646        199 DEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPG-GTFVGKIFR--SRNVVCLETKFQIFFENVSIAKPK  275 (433)
Q Consensus       199 ~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~g-G~fv~Kif~--g~~~~~~~~~l~~~F~~v~~~KP~  275 (433)
                      ..++|+|+||++|+ +|.+..|++.+++|    +++|..+|++| |+||+|+|+  |.+...++.+++.+|+.|.+.|| 
T Consensus       138 ~~~~DlVlsD~apn-sG~~~~D~~rs~~L----L~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~F~~V~~~KP-  211 (277)
T 3evf_A          138 PVKCDTLLCDIGES-SSSSVTEGERTVRV----LDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNP-  211 (277)
T ss_dssp             CCCCSEEEECCCCC-CSCHHHHHHHHHHH----HHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEEECCT-
T ss_pred             CCCccEEEecCccC-cCchHHHHHHHHHH----HHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHhcCCEEEEeC-
Confidence            45799999999999 99999999999988    99999999999 999999999  99999999999999999999999 


Q ss_pred             CCcccccceeEEEeeccCCCCCCCCccCcccccc
Q psy11646        276 SSRNSSIESFIVCQNYRPPKDYVPTIMNPFTEIT  309 (433)
Q Consensus       276 ~sr~~s~E~~~v~~~~~~~~~~~~~~~~~~~~~~  309 (433)
                      |||++|+|+|+||++...+.+++|.++.+++...
T Consensus       212 aSR~~S~E~Y~V~~~r~n~~~~v~~~s~~l~~r~  245 (277)
T 3evf_A          212 LSRNSTHEMYYVSGARSNVTFTVNQTSRLLMRRM  245 (277)
T ss_dssp             TSCTTCCCEEEESSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCceEEEEecCCCccchHHHHHHHHHHHH
Confidence            9999999999999999999999998888777543

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=99.90  E-value=6.2e-25  Score=207.50  Aligned_cols=105  Identities=16%  Similarity=0.121  Sum_probs=99.3

Q ss_pred             CCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCC-CeEEEEEee--cCCHHHHHHHHhcccceeEEecCC
Q psy11646        199 DEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPG-GTFVGKIFR--SRNVVCLETKFQIFFENVSIAKPK  275 (433)
Q Consensus       199 ~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~g-G~fv~Kif~--g~~~~~~~~~l~~~F~~v~~~KP~  275 (433)
                      ..++|+|+||+||+ +|.+..|++++++|    +++|..+|++| |+||+|+|+  |.+...++.+++.+|+.|.+.|| 
T Consensus       145 ~~~~DlVlsD~APn-sG~~~~D~~rs~~L----L~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~~F~~V~~~KP-  218 (300)
T 3eld_A          145 TEPSDTLLCDIGES-SSNPLVERDRTMKV----LENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLRFGGGIVRVP-  218 (300)
T ss_dssp             CCCCSEEEECCCCC-CSSHHHHHHHHHHH----HHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHHHHCCEEECCT-
T ss_pred             CCCcCEEeecCcCC-CCCHHHHHHHHHHH----HHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHHhCCcEEEEeC-
Confidence            34799999999999 99999999999999    99999999999 999999999  99999999999999999999999 


Q ss_pred             CCcccccceeEEEeeccCCCCCCCCccCcccccc
Q psy11646        276 SSRNSSIESFIVCQNYRPPKDYVPTIMNPFTEIT  309 (433)
Q Consensus       276 ~sr~~s~E~~~v~~~~~~~~~~~~~~~~~~~~~~  309 (433)
                      |||++|.|+|+||.+...+.+++|.++.+++...
T Consensus       219 aSR~~S~E~Y~V~~~r~n~~~~v~~~~~~l~~r~  252 (300)
T 3eld_A          219 FSRNSTHEMYYISGARNNITHMVNTTSRSLLRRM  252 (300)
T ss_dssp             TSCTTCCCEEEESSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCChHHeeeccCCCCcchhHHHHHHHHHHHH
Confidence            9999999999999999999999998888777544

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=99.86  E-value=2.9e-22  Score=185.05  Aligned_cols=133  Identities=22%  Similarity=0.207  Sum_probs=112.5

Q ss_pred             hccCCCEEEEEeccCCchhhHHHhhhcCCCccccccce--e--------------eeeccc-cCceEEE---c-cccccc
Q psy11646        130 LLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVR--T--------------YRCLLF-TGVIQVQ---G-DITKES  188 (433)
Q Consensus       130 ~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r--~--------------~~m~pl-~gv~~iq---g-Di~~~~  188 (433)
                      +++||+.++  +++..|           +.|++|+..+  .              .+|.++ +|+.+++   + |+++  
T Consensus        70 likpg~~VV--DLGaAP-----------GGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~--  134 (269)
T 2px2_A           70 FVQPIGKVV--DLGCGR-----------GGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFY--  134 (269)
T ss_dssp             SCCCCEEEE--EETCTT-----------SHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGG--
T ss_pred             CCCCCCEEE--EcCCCC-----------CHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccC--
Confidence            999998765  567887           8999988766  3              233444 6775554   6 9886  


Q ss_pred             hHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCC-eEEEEEeec--CCHHHHHHHHhcc
Q psy11646        189 TIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGG-TFVGKIFRS--RNVVCLETKFQIF  265 (433)
Q Consensus       189 t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG-~fv~Kif~g--~~~~~~~~~l~~~  265 (433)
                              ++..++|+|+|||||+ +|....|+.+++.    |+++|..+|++|| +||+|+|+|  .++..+++.++..
T Consensus       135 --------~~~~~~DvVLSDMAPn-SG~~~vD~~Rs~~----aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~  201 (269)
T 2px2_A          135 --------KPSEISDTLLCDIGES-SPSAEIEEQRTLR----ILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRR  201 (269)
T ss_dssp             --------SCCCCCSEEEECCCCC-CSCHHHHHHHHHH----HHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             --------CCCCCCCEEEeCCCCC-CCccHHHHHHHHH----HHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHH
Confidence                    4467899999999999 9999999999988    9999999999999 999999998  5677888999999


Q ss_pred             cceeEEecCCCCcccccceeEEEeec
Q psy11646        266 FENVSIAKPKSSRNSSIESFIVCQNY  291 (433)
Q Consensus       266 F~~v~~~KP~~sr~~s~E~~~v~~~~  291 (433)
                      |..|.+ ||.|||++|+|+|+||...
T Consensus       202 F~~vkv-k~paSR~~S~E~YlVa~~~  226 (269)
T 2px2_A          202 FGGGLV-RVPLSRNSNHEMYWVSGAS  226 (269)
T ss_dssp             HCCEEE-CCTTSCTTCCCEEEETTCC
T ss_pred             cCCEEE-ECCCCCCCCccEEEEeccc
Confidence            999997 5559999999999999765

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=99.83  E-value=5e-21  Score=178.70  Aligned_cols=119  Identities=18%  Similarity=0.069  Sum_probs=101.4

Q ss_pred             ccceeeeeccccCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCC
Q psy11646        164 TQVRTYRCLLFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGG  243 (433)
Q Consensus       164 ~~~r~~~m~pl~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG  243 (433)
                      ....+.++.+... .+++||+....+         +.++|+|+|||||++||..+.|..+++.|++.|+++|.++|++||
T Consensus       142 VavDL~~~~sda~-~~IqGD~~~~~~---------~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGG  211 (344)
T 3r24_A          142 VDSDLNDFVSDAD-STLIGDCATVHT---------ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGG  211 (344)
T ss_dssp             EEEESSCCBCSSS-EEEESCGGGEEE---------SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEE
T ss_pred             EEeeCcccccCCC-eEEEcccccccc---------CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCC
Confidence            3344444554445 459999755333         578999999999999999998988899999999999999999999


Q ss_pred             eEEEEEeecCCHHHHHHHHhcccceeEEecCCCCcccccceeEEEeeccCC
Q psy11646        244 TFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPP  294 (433)
Q Consensus       244 ~fv~Kif~g~~~~~~~~~l~~~F~~v~~~KP~~sr~~s~E~~~v~~~~~~~  294 (433)
                      +|++|+|+|.+. .++.++++.|+.|+++| .|||.+|+|+|+||++|+++
T Consensus       212 sFvVKVFQGsg~-~~L~~lrk~F~~VK~fK-~ASRa~SsEvYLVG~gfKg~  260 (344)
T 3r24_A          212 SIAVKITEHSWN-ADLYKLMGHFSWWTAFV-TNVNASSSEAFLIGANYLGK  260 (344)
T ss_dssp             EEEEEECSSSCC-HHHHHHHTTEEEEEEEE-EGGGTTSSCEEEEEEEECSS
T ss_pred             EEEEEEecCCCH-HHHHHHHhhCCeEEEEC-CCCCCCCeeEEEEeeeccCC
Confidence            999999999995 55666777999999998 69999999999999999986

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.82  E-value=1.4e-19  Score=163.71  Aligned_cols=101  Identities=33%  Similarity=0.513  Sum_probs=82.7

Q ss_pred             CCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHHHHHHHHhcccceeEEecCCCCcc
Q psy11646        200 EKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRN  279 (433)
Q Consensus       200 ~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~~~~~~l~~~F~~v~~~KP~~sr~  279 (433)
                      ..+|+|+++++++.+|.+..|+..+..+...++..+.++|+|||.|++++|.+.+...+...++..|..+.+.||.++|.
T Consensus        96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~v~~~~~~~~~~  175 (196)
T 2nyu_A           96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRK  175 (196)
T ss_dssp             GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHHEEEEEEECCC----
T ss_pred             CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHHhcceEEECCcccCc
Confidence            46899999999999999999999999999999999999999999999999999888899999999999999999999999


Q ss_pred             cccceeEEEeeccCCCCCCCC
Q psy11646        280 SSIESFIVCQNYRPPKDYVPT  300 (433)
Q Consensus       280 ~s~E~~~v~~~~~~~~~~~~~  300 (433)
                      .|.|.|++|.+|+.+++|.|+
T Consensus       176 ~~~e~~~v~~g~~~~~~~~~~  196 (196)
T 2nyu_A          176 ESSEVYFLATQYHGRKGTVKQ  196 (196)
T ss_dssp             ----EEEEEEEECCC------
T ss_pred             cCceEEEEeeecCCcccccCC
Confidence            999999999999999988874

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.82  E-value=2.9e-19  Score=168.68  Aligned_cols=128  Identities=23%  Similarity=0.390  Sum_probs=105.3

Q ss_pred             chhhhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC
Q psy11646          3 KATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN   82 (433)
Q Consensus         3 ~a~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~   82 (433)
                      ++..|++....+.....    .++..+...++.+|||||||+|.++. .++...+.  .+++|+|+|+.|++.|+++.  
T Consensus         7 ~~~~y~~~~~~~~~~~~----~l~~~~~~~~~~~vLdiG~G~G~~~~-~l~~~~~~--~~v~~~D~s~~~~~~a~~~~--   77 (259)
T 2p35_A            7 SAQQYLKFEDERTRPAR----DLLAQVPLERVLNGYDLGCGPGNSTE-LLTDRYGV--NVITGIDSDDDMLEKAADRL--   77 (259)
T ss_dssp             -CGGGBCCCCGGGHHHH----HHHTTCCCSCCSSEEEETCTTTHHHH-HHHHHHCT--TSEEEEESCHHHHHHHHHHS--
T ss_pred             CHHHHHHHHHHHHHHHH----HHHHhcCCCCCCEEEEecCcCCHHHH-HHHHhCCC--CEEEEEECCHHHHHHHHHhC--
Confidence            46778877777765554    45556666788999999999999994 44444443  48999999999999999984  


Q ss_pred             CCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        83 ~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      .++++.++|+...+ +   +++||+|+++.++||++++..+++++.++|+|||.+++..+.
T Consensus        78 ~~~~~~~~d~~~~~-~---~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  134 (259)
T 2p35_A           78 PNTNFGKADLATWK-P---AQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPD  134 (259)
T ss_dssp             TTSEEEECCTTTCC-C---SSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred             CCcEEEECChhhcC-c---cCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence            68999999998765 3   378999999999999999999999999999999999998753

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.82  E-value=3.1e-19  Score=162.27  Aligned_cols=188  Identities=23%  Similarity=0.350  Sum_probs=135.8

Q ss_pred             HHHHhcC-CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccccccc
Q psy11646         24 QYIDQFK-WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFL  102 (433)
Q Consensus        24 ~l~~~l~-~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~  102 (433)
                      ++.+.+. .+++.+|||+|||+|.++ ..+++..+....+++|+|+|+.+        ...++++.++|+.+.+.     
T Consensus        12 ~~~~~~~~~~~~~~vLDlGcG~G~~~-~~l~~~~~~~~~~v~gvD~s~~~--------~~~~v~~~~~d~~~~~~-----   77 (201)
T 2plw_A           12 ELDNKYLFLKKNKIILDIGCYPGSWC-QVILERTKNYKNKIIGIDKKIMD--------PIPNVYFIQGEIGKDNM-----   77 (201)
T ss_dssp             HHHHHHCCCCTTEEEEEESCTTCHHH-HHHHHHTTTSCEEEEEEESSCCC--------CCTTCEEEECCTTTTSS-----
T ss_pred             HHHHHcCCCCCCCEEEEeCCCCCHHH-HHHHHHcCCCCceEEEEeCCccC--------CCCCceEEEccccchhh-----
Confidence            4555554 367889999999999999 55555554201499999999831        12578888888765320     


Q ss_pred             CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeeccccCceEEEc
Q psy11646        103 AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQG  182 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~pl~gv~~iqg  182 (433)
                      .    ++++                     |+ +  +.     .           ..+                      
T Consensus        78 ~----~~~~---------------------~~-~--i~-----~-----------~~~----------------------   91 (201)
T 2plw_A           78 N----NIKN---------------------IN-Y--ID-----N-----------MNN----------------------   91 (201)
T ss_dssp             C----CC-------------------------------------------------------------------------
T ss_pred             h----hhcc---------------------cc-c--cc-----c-----------ccc----------------------
Confidence            0    0000                     00 0  00     0           000                      


Q ss_pred             cccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHHHHHHHH
Q psy11646        183 DITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKF  262 (433)
Q Consensus       183 Di~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~~~~~~l  262 (433)
                          ......+...+....+|+|++++++..+|.+..|+..+..+...++..+.++|+|||.|++++|.+.+...+...+
T Consensus        92 ----~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l  167 (201)
T 2plw_A           92 ----NSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYL  167 (201)
T ss_dssp             ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHH
T ss_pred             ----hhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHH
Confidence                0122333444556689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccceeEEecCCCCcccccceeEEEeeccCCC
Q psy11646        263 QIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK  295 (433)
Q Consensus       263 ~~~F~~v~~~KP~~sr~~s~E~~~v~~~~~~~~  295 (433)
                      +..|..+.+.||.++|..|.|.|+||.+|+++.
T Consensus       168 ~~~f~~v~~~~~~~~r~~s~e~y~v~~~~~~~~  200 (201)
T 2plw_A          168 KGMFQLVHTTKPKASRNESREIYLVCKNFLGRK  200 (201)
T ss_dssp             HTTEEEEEECCCC-----CCEEEEEEEEECCC-
T ss_pred             HHHHheEEEECCcccCCcCceEEEEEecCccCC
Confidence            999999999999999999999999999999864

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.79  E-value=4.1e-18  Score=161.05  Aligned_cols=129  Identities=18%  Similarity=0.288  Sum_probs=105.0

Q ss_pred             hhhhhhhhhhcHHHHHHHHHHHHH-hcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--
Q psy11646          4 ATLYETNNSMQQLDAAKLLSQYID-QFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--   80 (433)
Q Consensus         4 a~~Y~~~~~~~~~~~~~ll~~l~~-~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--   80 (433)
                      +..|++...........+++.+.. .....++.+|||||||+|.++..++. .   + .+++|+|+|+.|++.|+++.  
T Consensus         9 a~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~-~---~-~~v~~vD~s~~~~~~a~~~~~~   83 (263)
T 2yqz_A            9 AYAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIA-R---G-YRYIALDADAAMLEVFRQKIAG   83 (263)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHT-T---T-CEEEEEESCHHHHHHHHHHTTT
T ss_pred             HHHHhhhcccChHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHH-C---C-CEEEEEECCHHHHHHHHHHhhc
Confidence            567777665555566666666644 22346788999999999999954443 2   2 59999999999999999986  


Q ss_pred             CCCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646         81 TNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        81 ~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      ...++++.++|+...++++   ++||+|++..++||+++...+++++.++|+|||.+++.
T Consensus        84 ~~~~~~~~~~d~~~~~~~~---~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A           84 VDRKVQVVQADARAIPLPD---ESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             SCTTEEEEESCTTSCCSCT---TCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCceEEEEcccccCCCCC---CCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            3468999999998766544   78999999999999999999999999999999999887

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.78  E-value=1.6e-18  Score=166.00  Aligned_cols=110  Identities=28%  Similarity=0.517  Sum_probs=93.1

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccC
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLA  103 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~  103 (433)
                      .+++.+...++.+|||||||+|.++..++.   + + .+|+|+|+|+.|++.|+++.  .++.+.++|+...++    ++
T Consensus        48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~---~-~-~~v~gvD~s~~~~~~a~~~~--~~~~~~~~d~~~~~~----~~  116 (279)
T 3ccf_A           48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQ---S-G-AEVLGTDNAATMIEKARQNY--PHLHFDVADARNFRV----DK  116 (279)
T ss_dssp             HHHHHHCCCTTCEEEEETCTTSHHHHHHHH---T-T-CEEEEEESCHHHHHHHHHHC--TTSCEEECCTTTCCC----SS
T ss_pred             HHHHHhCCCCCCEEEEecCCCCHHHHHHHh---C-C-CeEEEEECCHHHHHHHHhhC--CCCEEEECChhhCCc----CC
Confidence            344455557889999999999999954443   2 2 59999999999999999986  688999999988654    27


Q ss_pred             cEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646        104 KFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       104 ~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      +||+|++..+++|+.++..++++++++|||||.+++..+..
T Consensus       117 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~  157 (279)
T 3ccf_A          117 PLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGK  157 (279)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             CcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            89999999999999999999999999999999999876543

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=99.77  E-value=6.8e-19  Score=162.92  Aligned_cols=117  Identities=17%  Similarity=0.123  Sum_probs=108.6

Q ss_pred             ceeeeeccccCceEE-EccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCC-c--hhHHHHHHHHHHHHHHHHHhccC
Q psy11646        166 VRTYRCLLFTGVIQV-QGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLH-D--LDEHLQGLLLIGALNITTFLLKP  241 (433)
Q Consensus       166 ~r~~~m~pl~gv~~i-qgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~-~--~D~~~~~~L~~~al~ia~~~L~~  241 (433)
                      +++.-|.|++|..++ ++|++.+.+.         .++|+|+|||+|+.+|.+ .  .||.+.+.|   ++.+|..+|+|
T Consensus       179 k~v~wi~Pi~GAt~~~~lDfg~p~~~---------~k~DvV~SDMApn~sGh~yqQC~DHarii~L---al~fA~~vLkP  246 (320)
T 2hwk_A          179 KMVDWLSDRPEATFRARLDLGIPGDV---------PKYDIIFVNVRTPYKYHHYQQCEDHAIKLSM---LTKKACLHLNP  246 (320)
T ss_dssp             SEEEEEESSTTCSEECCGGGCSCTTS---------CCEEEEEEECCCCCCSCHHHHHHHHHHHHHH---THHHHGGGEEE
T ss_pred             ceeEeeccCCCceeecccccCCcccc---------CcCCEEEEcCCCCCCCccccccchHHHHHHH---HHHHHHHhcCC
Confidence            455557899999999 9999987776         569999999999999999 8  899999999   99999999999


Q ss_pred             CCeEEEEEeecC--CHHHHHHHHhcccceeEEecCCCCcccccceeEEEeeccCCC
Q psy11646        242 GGTFVGKIFRSR--NVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK  295 (433)
Q Consensus       242 gG~fv~Kif~g~--~~~~~~~~l~~~F~~v~~~KP~~sr~~s~E~~~v~~~~~~~~  295 (433)
                      ||+||+|+|.|.  ..+.+...+++.|+.|...||+|||+ |.|.|+|+++|++..
T Consensus       247 GGtfV~KvyggaDr~se~lv~~LaR~F~~Vr~vKP~ASR~-StEvf~La~gf~g~~  301 (320)
T 2hwk_A          247 GGTCVSIGYGYADRASESIIGAIARQFKFSRVCKPKSSLE-ETEVLFVFIGYDRKA  301 (320)
T ss_dssp             EEEEEEEECCCCSHHHHHHHHHHHTTEEEEEEECCTTCCS-TTCEEEEEEEECCCC
T ss_pred             CceEEEEEecCCcccHHHHHHHHHHhcceeeeeCCCCccc-cceEEEEEEeecCCc
Confidence            999999999999  58999999999999999999999999 999999999999854

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.74  E-value=1.7e-17  Score=146.36  Aligned_cols=154  Identities=21%  Similarity=0.330  Sum_probs=113.1

Q ss_pred             HHHHHHhcC-CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc----
Q psy11646         22 LSQYIDQFK-WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN----   96 (433)
Q Consensus        22 l~~l~~~l~-~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~----   96 (433)
                      +.++++.+. .+++.+|||+|||+|.++..+ ++..+.+ .+++|+|+++ +++.       .++++.++|+.+.+    
T Consensus        10 l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l-~~~~~~~-~~v~~~D~~~-~~~~-------~~~~~~~~d~~~~~~~~~   79 (180)
T 1ej0_A           10 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYV-VTQIGGK-GRIIACDLLP-MDPI-------VGVDFLQGDFRDELVMKA   79 (180)
T ss_dssp             HHHHHHHHCCCCTTCEEEEESCTTCHHHHHH-HHHHCTT-CEEEEEESSC-CCCC-------TTEEEEESCTTSHHHHHH
T ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHH-HHHhCCC-CeEEEEECcc-cccc-------CcEEEEEcccccchhhhh
Confidence            344555555 467889999999999999544 4442222 4999999999 6532       57899999998754    


Q ss_pred             ccc-cccCcEeEEEEcccccchhhH-----------HHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccc
Q psy11646         97 LES-IFLAKFNKIFSFYCLHWVQDQ-----------RQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYT  164 (433)
Q Consensus        97 l~~-~~~~~fD~Vis~~~l~~~~d~-----------~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~  164 (433)
                      ++. ...++||+|+++.++++..+.           ..+++++.++|+|||.+++...                      
T Consensus        80 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~----------------------  137 (180)
T 1ej0_A           80 LLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF----------------------  137 (180)
T ss_dssp             HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE----------------------
T ss_pred             hhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe----------------------
Confidence            111 223789999999988876543           5677777777887777776542                      


Q ss_pred             cceeeeeccccCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCe
Q psy11646        165 QVRTYRCLLFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGT  244 (433)
Q Consensus       165 ~~r~~~m~pl~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~  244 (433)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (180)
T 1ej0_A          138 --------------------------------------------------------------------------------  137 (180)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEEeecCCHHHHHHHHhcccceeEEecCCCCcccccceeEEEeeccC
Q psy11646        245 FVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRP  293 (433)
Q Consensus       245 fv~Kif~g~~~~~~~~~l~~~F~~v~~~KP~~sr~~s~E~~~v~~~~~~  293 (433)
                            .......+...++..|+.+.+.+|.++|..+.|.|+||+++++
T Consensus       138 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (180)
T 1ej0_A          138 ------QGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKP  180 (180)
T ss_dssp             ------SSTTHHHHHHHHHHHEEEEEEECCTTSCTTCCEEEEEEEEECC
T ss_pred             ------cCCcHHHHHHHHHHhhhhEEeecCCcccccCceEEEEEccCCC
Confidence                  2333445566667789999999999999999999999999974

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.74  E-value=5.7e-18  Score=161.12  Aligned_cols=118  Identities=21%  Similarity=0.442  Sum_probs=93.6

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccC
Q psy11646         19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIAD   94 (433)
Q Consensus        19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~   94 (433)
                      .+++..++... .+++.+|||||||+|..+.. +++..+..+.+|+|+|+|+.|++.|+++.    ...++++.++|+.+
T Consensus        57 ~~~i~~l~~~~-~~~~~~vLDlGcGtG~~~~~-la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~  134 (261)
T 4gek_A           57 ISMIGMLAERF-VQPGTQVYDLGCSLGAATLS-VRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD  134 (261)
T ss_dssp             HHHHHHHHHHH-CCTTCEEEEETCTTTHHHHH-HHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTT
T ss_pred             HHHHHHHHHHh-CCCCCEEEEEeCCCCHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccc
Confidence            34444455443 36899999999999999944 44444333369999999999999999986    23579999999988


Q ss_pred             CcccccccCcEeEEEEcccccchhh--HHHHHHHHHHhccCCCEEEEEecc
Q psy11646         95 QNLESIFLAKFNKIFSFYCLHWVQD--QRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        95 ~~l~~~~~~~fD~Vis~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      .++     +.||+|+++.++||+++  ...++++++++|||||.+++.+..
T Consensus       135 ~~~-----~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~  180 (261)
T 4gek_A          135 IAI-----ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  180 (261)
T ss_dssp             CCC-----CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             ccc-----cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEecc
Confidence            654     46999999999999864  457899999999999999998654

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.74  E-value=2.1e-17  Score=153.78  Aligned_cols=178  Identities=17%  Similarity=0.289  Sum_probs=117.9

Q ss_pred             HHHHHHHHHhcC-CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCc
Q psy11646         19 AKLLSQYIDQFK-WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQN   96 (433)
Q Consensus        19 ~~ll~~l~~~l~-~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~   96 (433)
                      ......++..+. ..++.+|||||||+|.++ ..++...+.  .+++|+|+|+.+++.|+++. ...++++.++|+.+.+
T Consensus        29 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~-~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~  105 (234)
T 3dtn_A           29 DDFYGVSVSIASVDTENPDILDLGAGTGLLS-AFLMEKYPE--ATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYD  105 (234)
T ss_dssp             HHHHHHHHHTCCCSCSSCEEEEETCTTSHHH-HHHHHHCTT--CEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCC
T ss_pred             HHHHHHHHHHhhcCCCCCeEEEecCCCCHHH-HHHHHhCCC--CeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccC
Confidence            344455666665 356889999999999999 455555543  49999999999999999998 3348999999998865


Q ss_pred             ccccccCcEeEEEEcccccchhhHH--HHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeeccc
Q psy11646         97 LESIFLAKFNKIFSFYCLHWVQDQR--QAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLF  174 (433)
Q Consensus        97 l~~~~~~~fD~Vis~~~l~~~~d~~--~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~pl  174 (433)
                      .+    ++||+|++..+++|+++..  .++++++++|||||.+++.+..............  ..|..+..........+
T Consensus       106 ~~----~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  179 (234)
T 3dtn_A          106 FE----EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNK--TIWRQYVENSGLTEEEI  179 (234)
T ss_dssp             CC----SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHH--HHHHHHHHTSSCCHHHH
T ss_pred             CC----CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHH--HHHHHHHHhcCCCHHHH
Confidence            44    7899999999999997655  5899999999999999998755433221111111  22322221111100000


Q ss_pred             cCceEEEccccccchHHHHHHhcCCCCCeEEE
Q psy11646        175 TGVIQVQGDITKESTIKEIFSHFDDEKVDLVV  206 (433)
Q Consensus       175 ~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVv  206 (433)
                      .... .........+.+++..++...+|..|-
T Consensus       180 ~~~~-~~~~~~~~~~~~~~~~ll~~aGF~~v~  210 (234)
T 3dtn_A          180 AAGY-ERSKLDKDIEMNQQLNWLKEAGFRDVS  210 (234)
T ss_dssp             HTTC-----CCCCCBHHHHHHHHHHTTCEEEE
T ss_pred             HHHH-HhcccccccCHHHHHHHHHHcCCCcee
Confidence            0000 011233445677777888777777653

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.73  E-value=1e-17  Score=158.96  Aligned_cols=124  Identities=20%  Similarity=0.320  Sum_probs=94.1

Q ss_pred             chhhhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC
Q psy11646          3 KATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN   82 (433)
Q Consensus         3 ~a~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~   82 (433)
                      .|+.|++.++.....   +++.+.+..  ..+.+|||||||+|..+ ..++..    +.+|+|+|+|+.|++.|+++   
T Consensus        14 ~a~~Y~~~Rp~yp~~---l~~~l~~~~--~~~~~vLDvGcGtG~~~-~~l~~~----~~~v~gvD~s~~ml~~a~~~---   80 (257)
T 4hg2_A           14 VADAYRAFRPRYPRA---LFRWLGEVA--PARGDALDCGCGSGQAS-LGLAEF----FERVHAVDPGEAQIRQALRH---   80 (257)
T ss_dssp             ------CCCCCCCHH---HHHHHHHHS--SCSSEEEEESCTTTTTH-HHHHTT----CSEEEEEESCHHHHHTCCCC---
T ss_pred             HHHHHHHHCCCcHHH---HHHHHHHhc--CCCCCEEEEcCCCCHHH-HHHHHh----CCEEEEEeCcHHhhhhhhhc---
Confidence            366777766554333   344444433  34679999999999999 455532    25999999999999988765   


Q ss_pred             CCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        83 ~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      +++++.++|+++.++++   ++||+|++..++||+ +.+.++++++|+|||||.+++...+
T Consensus        81 ~~v~~~~~~~e~~~~~~---~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~  137 (257)
T 4hg2_A           81 PRVTYAVAPAEDTGLPP---ASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYG  137 (257)
T ss_dssp             TTEEEEECCTTCCCCCS---SCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCceeehhhhhhhcccC---CcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECC
Confidence            68999999999887765   899999999999998 5788999999999999999887654

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.72  E-value=7e-18  Score=164.00  Aligned_cols=89  Identities=18%  Similarity=0.139  Sum_probs=76.7

Q ss_pred             CCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCC--HHHHHHHHhcccceeEEecCCCCc
Q psy11646        201 KVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRN--VVCLETKFQIFFENVSIAKPKSSR  278 (433)
Q Consensus       201 ~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~--~~~~~~~l~~~F~~v~~~KP~~sr  278 (433)
                      .+|+|+||++++ +|.+..|+..+.    .++..+.++|+|||.|++|+|.+.+  ...++..++..|..|.+.|| +||
T Consensus       148 ~fD~V~sd~~~~-~g~~~~d~~~~l----~~L~~~~~~LkpGG~~v~kv~~~~~~~~~~~l~~l~~~f~~v~~~kP-~sR  221 (305)
T 2p41_A          148 RCDTLLCDIGES-SPNPTVEAGRTL----RVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHGGALVRNP-LSR  221 (305)
T ss_dssp             CCSEEEECCCCC-CSSHHHHHHHHH----HHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHHCCEEECCT-TSC
T ss_pred             CCCEEEECCccc-cCcchhhHHHHH----HHHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHHHcCCEEEecC-CCC
Confidence            588888888887 787777766553    4778888999999999999999955  56889999999999999999 999


Q ss_pred             ccccceeEEEeeccCCC
Q psy11646        279 NSSIESFIVCQNYRPPK  295 (433)
Q Consensus       279 ~~s~E~~~v~~~~~~~~  295 (433)
                      +.|.|.|++|.+|+...
T Consensus       222 ~~s~E~y~v~~~~~~~~  238 (305)
T 2p41_A          222 NSTHEMYWVSNASGNIV  238 (305)
T ss_dssp             TTCCCEEEETTCCCCHH
T ss_pred             CccHHHHHHHhccCCcc
Confidence            99999999999997543

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.71  E-value=1.5e-17  Score=158.37  Aligned_cols=93  Identities=15%  Similarity=0.081  Sum_probs=76.8

Q ss_pred             CCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCC--eEEEEEeecCCHH---HHHHHHhcccceeEEecCC
Q psy11646        201 KVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGG--TFVGKIFRSRNVV---CLETKFQIFFENVSIAKPK  275 (433)
Q Consensus       201 ~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG--~fv~Kif~g~~~~---~~~~~l~~~F~~v~~~KP~  275 (433)
                      .+|+|+||++ +.++.+..|+..+..    ++..+.++|+|||  .|++|+|. .+..   .++..++..|..|.+.| .
T Consensus       140 ~fD~V~sd~~-~~~~~~~~d~~~~l~----~L~~~~r~LkpGG~~~fv~kv~~-~~~~~~~~~l~~l~~~f~~v~~~k-~  212 (265)
T 2oxt_A          140 RTDVIMCDVG-ESSPKWSVESERTIK----ILELLEKWKVKNPSADFVVKVLC-PYSVEVMERLSVMQRKWGGGLVRN-P  212 (265)
T ss_dssp             CCSEEEECCC-CCCSCHHHHHHHHHH----HHHHHHHHHHHCTTCEEEEEESC-TTSHHHHHHHHHHHHHHCCEEECC-T
T ss_pred             CCcEEEEeCc-ccCCccchhHHHHHH----HHHHHHHHhccCCCeEEEEEeCC-CCChhHHHHHHHHHHHcCCEEEEE-e
Confidence            5677777777 667776666665433    6788889999999  99999999 6655   88889999999999999 8


Q ss_pred             CCcccccceeEEEeeccCCCCCCCC
Q psy11646        276 SSRNSSIESFIVCQNYRPPKDYVPT  300 (433)
Q Consensus       276 ~sr~~s~E~~~v~~~~~~~~~~~~~  300 (433)
                      +||++|.|+|+||.++..+.++++.
T Consensus       213 ~sR~~s~E~y~v~~~~~~~~~~~~~  237 (265)
T 2oxt_A          213 YSRNSTHEMYFTSRAGGNIIGAVTA  237 (265)
T ss_dssp             TSCTTCCCEEEESSCCSCHHHHHHH
T ss_pred             cccCCCccEEEEecCCCCcchhhHH
Confidence            9999999999999988777766654

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.68  E-value=2.1e-16  Score=150.81  Aligned_cols=113  Identities=26%  Similarity=0.521  Sum_probs=95.0

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCccccc
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESI  100 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~  100 (433)
                      .+.......++.+|||||||+|.++ ..++...+.  .+++|+|+|+.+++.|+++.   ...++++.+.|+...+++. 
T Consensus        28 ~l~~~~~~~~~~~vLDiG~G~G~~~-~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~-  103 (276)
T 3mgg_A           28 LLHHDTVYPPGAKVLEAGCGIGAQT-VILAKNNPD--AEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFED-  103 (276)
T ss_dssp             HHHTTCCCCTTCEEEETTCTTSHHH-HHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCT-
T ss_pred             HHhhcccCCCCCeEEEecCCCCHHH-HHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCC-
Confidence            3334444568899999999999999 455555544  49999999999999999987   3468999999998866554 


Q ss_pred             ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646        101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                        ++||+|++..+++|++++..+++++.++|||||.+++...
T Consensus       104 --~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  143 (276)
T 3mgg_A          104 --SSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEG  143 (276)
T ss_dssp             --TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --CCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence              8999999999999999999999999999999999999764

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.68  E-value=2.3e-16  Score=145.08  Aligned_cols=117  Identities=18%  Similarity=0.200  Sum_probs=97.1

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccc
Q psy11646         23 SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLES   99 (433)
Q Consensus        23 ~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~   99 (433)
                      ..++..+...++.+|||+|||+|.++..++....+.  .+++|+|+|+.+++.|++++   ...++++.++|+...+++.
T Consensus        27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~  104 (219)
T 3dh0_A           27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEK--GKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD  104 (219)
T ss_dssp             HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTT--CEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred             HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence            345555666788999999999999994444332233  49999999999999999987   3357999999998866554


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                         ++||+|+++.+++|++++..+++++.++|+|||.+++.....
T Consensus       105 ---~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  146 (219)
T 3dh0_A          105 ---NTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKK  146 (219)
T ss_dssp             ---SCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             ---CCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecc
Confidence               889999999999999999999999999999999999986543

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.68  E-value=2.8e-16  Score=148.61  Aligned_cols=113  Identities=25%  Similarity=0.443  Sum_probs=94.7

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCccc
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLE   98 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~   98 (433)
                      +..+++.+...++.+|||||||+|.++ ..++...    .+++|+|+|+.|++.|+++.   +..++.+.++|++..+++
T Consensus        26 ~~~l~~~l~~~~~~~vLDiGcG~G~~~-~~l~~~~----~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~  100 (260)
T 1vl5_A           26 LAKLMQIAALKGNEEVLDVATGGGHVA-NAFAPFV----KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT  100 (260)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHH-HHHGGGS----SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC
T ss_pred             HHHHHHHhCCCCCCEEEEEeCCCCHHH-HHHHHhC----CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCC
Confidence            445555666678999999999999999 4454432    39999999999999999886   335799999999887655


Q ss_pred             ccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      +   ++||+|+++.++||++++..++++++++|||||.+++...
T Consensus       101 ~---~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~  141 (260)
T 1vl5_A          101 D---ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN  141 (260)
T ss_dssp             T---TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             C---CCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            4   8999999999999999999999999999999999998754

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.68  E-value=8.8e-17  Score=154.00  Aligned_cols=93  Identities=20%  Similarity=0.125  Sum_probs=71.4

Q ss_pred             CCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCC--eEEEEEeecCCHH---HHHHHHhcccceeEEecCC
Q psy11646        201 KVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGG--TFVGKIFRSRNVV---CLETKFQIFFENVSIAKPK  275 (433)
Q Consensus       201 ~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG--~fv~Kif~g~~~~---~~~~~l~~~F~~v~~~KP~  275 (433)
                      .+|+|+||++ ..++.+..|+..+..    ++..+.++|+|||  .|++|+|. ++..   .++..++..|..+.+. |.
T Consensus       148 ~fD~Vvsd~~-~~~~~~~~d~~~~l~----~L~~~~r~LkpGG~~~~v~~~~~-~~~~~~~~~l~~l~~~f~~v~v~-P~  220 (276)
T 2wa2_A          148 QADTVLCDIG-ESNPTAAVEASRTLT----VLNVISRWLEYNQGCGFCVKVLN-PYSCDVLEALMKMQARFGGGLIR-VP  220 (276)
T ss_dssp             CCSEEEECCC-CCCSCHHHHHHHHHH----HHHHHHHHHHHSTTCEEEEEESC-CCSHHHHHHHHHHHHHHCCEEEC-CT
T ss_pred             CcCEEEECCC-cCCCchhhhHHHHHH----HHHHHHHHhccCCCcEEEEEeCC-CCchhHHHHHHHHHHHcCCEEEE-cC
Confidence            4566666666 555555555554433    6777888999999  99999999 5555   7788899999999999 99


Q ss_pred             CCcccccceeEEEeeccCCCCCCCC
Q psy11646        276 SSRNSSIESFIVCQNYRPPKDYVPT  300 (433)
Q Consensus       276 ~sr~~s~E~~~v~~~~~~~~~~~~~  300 (433)
                      +||++|.|+|+||.++....+..++
T Consensus       221 ~sR~~s~E~y~v~~~~~~~~~~~~~  245 (276)
T 2wa2_A          221 LSRNSTHEMYFVSGIKNNIMGNVTA  245 (276)
T ss_dssp             TSCTTCCCEEEESSCCCCHHHHHHH
T ss_pred             CCCCcchheEEecccCCCcchhHHH
Confidence            9999999999999887655544433

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.66  E-value=4.2e-16  Score=148.31  Aligned_cols=122  Identities=25%  Similarity=0.452  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEe
Q psy11646         15 QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVA   90 (433)
Q Consensus        15 ~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~   90 (433)
                      ......+++.+++.+...++.+|||||||+|..+..++. ..  + .+++|+|+|+.+++.|+++.   + ..++++.++
T Consensus        43 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~--~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~  118 (273)
T 3bus_A           43 DDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLAT-AR--D-VRVTGISISRPQVNQANARATAAGLANRVTFSYA  118 (273)
T ss_dssp             HHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHH-HS--C-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHH-hc--C-CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEC
Confidence            345667778888888888899999999999999954443 32  2 59999999999999999886   1 347999999


Q ss_pred             cccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         91 NIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        91 Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      |+.+.++++   ++||+|++..+++|+++...+++++.++|||||.+++..+.
T Consensus       119 d~~~~~~~~---~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  168 (273)
T 3bus_A          119 DAMDLPFED---ASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFV  168 (273)
T ss_dssp             CTTSCCSCT---TCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             ccccCCCCC---CCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEee
Confidence            998866554   89999999999999999999999999999999999998754

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.66  E-value=5e-16  Score=142.15  Aligned_cols=122  Identities=22%  Similarity=0.318  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEec
Q psy11646         16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVAN   91 (433)
Q Consensus        16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~D   91 (433)
                      +....+...+++.+..+++ +|||+|||+|.++..+ +.. +.  .+++|+|+|+.+++.|++++    ...++++.++|
T Consensus        27 ~~~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l-~~~-~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d  101 (219)
T 3dlc_A           27 PIYPIIAENIINRFGITAG-TCIDIGSGPGALSIAL-AKQ-SD--FSIRALDFSKHMNEIALKNIADANLNDRIQIVQGD  101 (219)
T ss_dssp             THHHHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHH-HHH-SE--EEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECB
T ss_pred             cccHHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHH-HHc-CC--CeEEEEECCHHHHHHHHHHHHhccccCceEEEEcC
Confidence            3445566677777766666 9999999999999444 433 22  59999999999999999986    23579999999


Q ss_pred             ccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646         92 IADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus        92 i~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      +.+.+++.   ++||+|+++.+++|++++..+++++.++|+|||.+++......
T Consensus       102 ~~~~~~~~---~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  152 (219)
T 3dlc_A          102 VHNIPIED---NYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGN  152 (219)
T ss_dssp             TTBCSSCT---TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSS
T ss_pred             HHHCCCCc---ccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCc
Confidence            98866554   8999999999999999999999999999999999999864443

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.66  E-value=9.5e-16  Score=144.31  Aligned_cols=115  Identities=23%  Similarity=0.381  Sum_probs=96.6

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccc
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIF  101 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~  101 (433)
                      ...+.+.+...++.+|||||||+|.++..++. .   +..+++|+|+|+.+++.|+++....++++.++|+...+++.  
T Consensus        33 ~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~-~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~--  106 (253)
T 3g5l_A           33 WHELKKMLPDFNQKTVLDLGCGFGWHCIYAAE-H---GAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEP--  106 (253)
T ss_dssp             HHHHHTTCCCCTTCEEEEETCTTCHHHHHHHH-T---TCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCT--
T ss_pred             HHHHHHhhhccCCCEEEEECCCCCHHHHHHHH-c---CCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCC--
Confidence            34556666656889999999999999944443 2   21389999999999999999986678999999998766544  


Q ss_pred             cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646        102 LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       102 ~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                       ++||+|++..+++|++++..++++++++|||||.+++....
T Consensus       107 -~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  147 (253)
T 3g5l_A          107 -DAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEH  147 (253)
T ss_dssp             -TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -CCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence             89999999999999999999999999999999999987543

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.66  E-value=1.5e-15  Score=141.58  Aligned_cols=115  Identities=27%  Similarity=0.498  Sum_probs=96.1

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccccc
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESI  100 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~  100 (433)
                      ++..+...+  +++.+|||||||+|.++..++. .   + .+++|+|+|+.+++.|+++....++++.++|+.+.+++. 
T Consensus        43 ~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~-~---~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~-  114 (242)
T 3l8d_A           43 IIPFFEQYV--KKEAEVLDVGCGDGYGTYKLSR-T---G-YKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFEN-  114 (242)
T ss_dssp             HHHHHHHHS--CTTCEEEEETCTTSHHHHHHHH-T---T-CEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCT-
T ss_pred             HHHHHHHHc--CCCCeEEEEcCCCCHHHHHHHH-c---C-CeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCC-
Confidence            444444444  4788999999999999954443 2   2 599999999999999999875678999999998876544 


Q ss_pred             ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646        101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                        ++||+|++..+++|++++..+++++.++|+|||.+++......
T Consensus       115 --~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  157 (242)
T 3l8d_A          115 --EQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPT  157 (242)
T ss_dssp             --TCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             --CCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCc
Confidence              8999999999999999999999999999999999999875443

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.66  E-value=1.4e-15  Score=141.94  Aligned_cols=106  Identities=18%  Similarity=0.311  Sum_probs=90.6

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSF  111 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~  111 (433)
                      .++.+|||||||+|.++ ..++..   + .+++|+|+|+.+++.|+++... ++++.++|+++. .+   +++||+|++.
T Consensus        41 ~~~~~vLDiGcG~G~~~-~~l~~~---~-~~v~gvD~s~~~~~~a~~~~~~-~v~~~~~d~~~~-~~---~~~fD~v~~~  110 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFT-SRLQEH---F-NDITCVEASEEAISHAQGRLKD-GITYIHSRFEDA-QL---PRRYDNIVLT  110 (250)
T ss_dssp             CCSSCEEEESCTTSHHH-HHHTTT---C-SCEEEEESCHHHHHHHHHHSCS-CEEEEESCGGGC-CC---SSCEEEEEEE
T ss_pred             cCCCcEEEECCCCCHHH-HHHHHh---C-CcEEEEeCCHHHHHHHHHhhhC-CeEEEEccHHHc-Cc---CCcccEEEEh
Confidence            46789999999999999 455432   2 4899999999999999999743 899999999876 23   3889999999


Q ss_pred             ccccchhhHHHHHHHHH-HhccCCCEEEEEeccCCch
Q psy11646        112 YCLHWVQDQRQAISNIY-NLLMPGGEVLLLLNAFNPI  147 (433)
Q Consensus       112 ~~l~~~~d~~~~l~~i~-~~LkpGG~lll~~~~~~p~  147 (433)
                      .++||++++..++++++ ++|||||.+++..+.....
T Consensus       111 ~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~  147 (250)
T 2p7i_A          111 HVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAV  147 (250)
T ss_dssp             SCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCH
T ss_pred             hHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCChHHH
Confidence            99999999999999999 9999999999988765543

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=99.66  E-value=5.9e-16  Score=140.61  Aligned_cols=83  Identities=22%  Similarity=0.216  Sum_probs=78.0

Q ss_pred             CCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCC--HHHHHHHHhcccceeEEecCCC
Q psy11646        199 DEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRN--VVCLETKFQIFFENVSIAKPKS  276 (433)
Q Consensus       199 ~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~--~~~~~~~l~~~F~~v~~~KP~~  276 (433)
                      ..++|+++||++| .+|....|+.++..    +|+++..+|++ |+|++|+|.+..  +..+...++..|..+.+.||. 
T Consensus       142 ~~~~DtllcDIge-Ss~~~~vE~~Rtlr----vLela~~wL~~-~~fc~KVl~py~p~v~e~l~~lq~~fgg~lVR~P~-  214 (267)
T 3p8z_A          142 PEKCDTLLCDIGE-SSPSPTVEESRTIR----VLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLERLQRKHGGMLVRNPL-  214 (267)
T ss_dssp             CCCCSEEEECCCC-CCSCHHHHHHHHHH----HHHHHGGGCSS-CEEEEEESCCCSHHHHHHHHHHHHHHCCEEECCTT-
T ss_pred             CccccEEEEecCC-CCCChhhhhhHHHH----HHHHHHHhccc-CCEEEEEccCCChhHHHHHHHHHHHhCCEeEeCCC-
Confidence            3579999999999 99999999999877    99999999998 899999999999  779999999999999999999 


Q ss_pred             CcccccceeEEE
Q psy11646        277 SRNSSIESFIVC  288 (433)
Q Consensus       277 sr~~s~E~~~v~  288 (433)
                      ||++|.|.|+|.
T Consensus       215 SRnsThEMY~Vs  226 (267)
T 3p8z_A          215 SRNSTHEMYWIS  226 (267)
T ss_dssp             SCTTCCCEEEES
T ss_pred             CCCCcceEEEEe
Confidence            999999999994

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.66  E-value=4e-16  Score=145.88  Aligned_cols=136  Identities=15%  Similarity=0.245  Sum_probs=100.6

Q ss_pred             chhhhhhhhhhcHHHHHHHHHHHHHhcCC-CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC
Q psy11646          3 KATLYETNNSMQQLDAAKLLSQYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT   81 (433)
Q Consensus         3 ~a~~Y~~~~~~~~~~~~~ll~~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~   81 (433)
                      ....|.......+.....+...+...+.. +++.+|||||||+|.++. .++..   + .+++|+|+|+.+++.|+++  
T Consensus        10 ~~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~-~l~~~---~-~~v~gvD~s~~~~~~a~~~--   82 (240)
T 3dli_A           10 TSDYYFLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLE-LCKEE---G-IESIGVDINEDMIKFCEGK--   82 (240)
T ss_dssp             --CHHHHHHHHHTCCHHHHHHHHGGGGGGTTTCSCEEEETCTTTHHHH-HHHHH---T-CCEEEECSCHHHHHHHHTT--
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHH-HHHhC---C-CcEEEEECCHHHHHHHHhh--
Confidence            44556555444444445555555555442 467899999999999994 44433   2 4899999999999999975  


Q ss_pred             CCCeEEEEecccCCcccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEeccCCchhh
Q psy11646         82 NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLNAFNPIYD  149 (433)
Q Consensus        82 ~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~  149 (433)
                         +++..+|+.+. ..+..+++||+|++..+++|++  +...+++++.++|||||.+++..+.......
T Consensus        83 ---~~~~~~d~~~~-~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  148 (240)
T 3dli_A           83 ---FNVVKSDAIEY-LKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYS  148 (240)
T ss_dssp             ---SEEECSCHHHH-HHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHH
T ss_pred             ---cceeeccHHHH-hhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHH
Confidence               78888888764 1112348999999999999998  4589999999999999999998876554433

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.65  E-value=5.2e-16  Score=141.83  Aligned_cols=114  Identities=15%  Similarity=0.194  Sum_probs=90.2

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC---------------CCCe
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT---------------NPKL   85 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~---------------~~~i   85 (433)
                      .+..++..+...++.+|||+|||+|..+. .+++.   + .+|+|+|+|+.|++.|+++..               ..++
T Consensus        10 ~l~~~~~~l~~~~~~~vLD~GCG~G~~~~-~la~~---g-~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v   84 (203)
T 1pjz_A           10 DLQQYWSSLNVVPGARVLVPLCGKSQDMS-WLSGQ---G-YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGI   84 (203)
T ss_dssp             HHHHHHHHHCCCTTCEEEETTTCCSHHHH-HHHHH---C-CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSS
T ss_pred             HHHHHHHhcccCCCCEEEEeCCCCcHhHH-HHHHC---C-CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCcc
Confidence            34455566666788999999999999994 44432   3 599999999999999998852               3579


Q ss_pred             EEEEecccCCcccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEe
Q psy11646         86 EFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        86 ~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ++.++|+.+.+..+  .++||+|++..++++++  +...++++++++|||||++++..
T Consensus        85 ~~~~~d~~~l~~~~--~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~  140 (203)
T 1pjz_A           85 EIWCGDFFALTARD--IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  140 (203)
T ss_dssp             EEEEECCSSSTHHH--HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             EEEECccccCCccc--CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            99999998865431  15899999999999885  45678999999999999855544

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.65  E-value=2e-14  Score=131.33  Aligned_cols=130  Identities=21%  Similarity=0.267  Sum_probs=100.3

Q ss_pred             hhhhhhhhhhcHH-HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC
Q psy11646          4 ATLYETNNSMQQL-DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN   82 (433)
Q Consensus         4 a~~Y~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~   82 (433)
                      ++.|+........ ...+...+++..+.. ++.+|||||||+|.++ ..+      +..+++|+|+|+.|++.|+++.  
T Consensus         7 a~~y~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~vLdiG~G~G~~~-~~l------~~~~v~~vD~s~~~~~~a~~~~--   76 (211)
T 2gs9_A            7 AEAYEAWYGTPLGAYVIAEEERALKGLLP-PGESLLEVGAGTGYWL-RRL------PYPQKVGVEPSEAMLAVGRRRA--   76 (211)
T ss_dssp             TTTTTGGGGSHHHHHHHHHHHHHHHTTCC-CCSEEEEETCTTCHHH-HHC------CCSEEEEECCCHHHHHHHHHHC--
T ss_pred             HHHHHHHhcccchhhhHHHHHHHHHHhcC-CCCeEEEECCCCCHhH-HhC------CCCeEEEEeCCHHHHHHHHHhC--
Confidence            5556654332221 112333344544433 7889999999999998 343      2128999999999999999987  


Q ss_pred             CCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646         83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus        83 ~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      .++++.++|+...++++   ++||+|++..+++|++++..+++++.++|||||.+++..+....
T Consensus        77 ~~~~~~~~d~~~~~~~~---~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~  137 (211)
T 2gs9_A           77 PEATWVRAWGEALPFPG---ESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALS  137 (211)
T ss_dssp             TTSEEECCCTTSCCSCS---SCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred             CCcEEEEcccccCCCCC---CcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCcC
Confidence            68899999998866544   78999999999999999999999999999999999998876554

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.65  E-value=3.4e-16  Score=147.39  Aligned_cols=118  Identities=16%  Similarity=0.173  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecc
Q psy11646         17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANI   92 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di   92 (433)
                      .....+..++..+..+++.+|||||||+|..+.. +++..  + .+++|+|+|+.|++.|+++.   + ..++++.++|+
T Consensus        20 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~-la~~~--~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~   95 (256)
T 1nkv_A           20 FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCT-WARDH--G-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA   95 (256)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHH-HHHHT--C-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHH-HHHhc--C-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECCh
Confidence            3445666777777778899999999999999944 44433  2 48999999999999999886   2 24799999999


Q ss_pred             cCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         93 ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        93 ~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      .+.+.    +++||+|++..+++|++++..++++++++|||||.+++..+
T Consensus        96 ~~~~~----~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  141 (256)
T 1nkv_A           96 AGYVA----NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP  141 (256)
T ss_dssp             TTCCC----SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             HhCCc----CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecC
Confidence            88654    38899999999999999999999999999999999999764

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.65  E-value=9.8e-16  Score=144.71  Aligned_cols=119  Identities=18%  Similarity=0.339  Sum_probs=101.2

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC-CCeEEEEecccCCcc
Q psy11646         19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN-PKLEFVVANIADQNL   97 (433)
Q Consensus        19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~-~~i~~~~~Di~~~~l   97 (433)
                      ...+..+++.+...++.+|||||||+|.++..++...   + .+|+|+|+|+.+++.|+++... .++++.++|+...++
T Consensus        41 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~  116 (266)
T 3ujc_A           41 LEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY---G-AHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEF  116 (266)
T ss_dssp             HHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH---C-CEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc---C-CEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCC
Confidence            3456777888877889999999999999995554432   2 5999999999999999999833 789999999988765


Q ss_pred             cccccCcEeEEEEcccccch--hhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646         98 ESIFLAKFNKIFSFYCLHWV--QDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~--~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      +.   ++||+|++..++||+  +++..+++++.++|||||.+++..+..
T Consensus       117 ~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  162 (266)
T 3ujc_A          117 PE---NNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCA  162 (266)
T ss_dssp             CT---TCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CC---CcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            54   899999999999999  899999999999999999999987543

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.64  E-value=6.8e-15  Score=139.31  Aligned_cols=112  Identities=21%  Similarity=0.355  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc
Q psy11646         17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN   96 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~   96 (433)
                      ....++..+...+  +++.+|||||||+|.++. .++..   + .+++|+|+|+.+++.|+++.  .++++.++|+...+
T Consensus        36 ~~~~~~~~l~~~~--~~~~~vLDiGcG~G~~~~-~l~~~---~-~~v~gvD~s~~~~~~a~~~~--~~~~~~~~d~~~~~  106 (263)
T 3pfg_A           36 EAADLAALVRRHS--PKAASLLDVACGTGMHLR-HLADS---F-GTVEGLELSADMLAIARRRN--PDAVLHHGDMRDFS  106 (263)
T ss_dssp             HHHHHHHHHHHHC--TTCCEEEEETCTTSHHHH-HHTTT---S-SEEEEEESCHHHHHHHHHHC--TTSEEEECCTTTCC
T ss_pred             HHHHHHHHHHhhC--CCCCcEEEeCCcCCHHHH-HHHHc---C-CeEEEEECCHHHHHHHHhhC--CCCEEEECChHHCC
Confidence            3444444444443  457899999999999994 44432   2 58999999999999999986  48999999998865


Q ss_pred             ccccccCcEeEEEEcc-cccchh---hHHHHHHHHHHhccCCCEEEEEe
Q psy11646         97 LESIFLAKFNKIFSFY-CLHWVQ---DQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        97 l~~~~~~~fD~Vis~~-~l~~~~---d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .    .++||+|++.. +++|+.   +...+++++.++|||||.+++..
T Consensus       107 ~----~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          107 L----GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP  151 (263)
T ss_dssp             C----SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             c----cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            5    38999999998 999984   66788999999999999999864

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.64  E-value=1.8e-15  Score=141.51  Aligned_cols=112  Identities=21%  Similarity=0.369  Sum_probs=94.6

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCccccc
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESI  100 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~  100 (433)
                      .+++.+..+++.+|||||||+|.++. .++...    .+++|+|+|+.|++.|+++.   ...++++.++|++..++++ 
T Consensus        12 ~~~~~~~~~~~~~vLDiGcG~G~~~~-~l~~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-   85 (239)
T 1xxl_A           12 LMIKTAECRAEHRVLDIGAGAGHTAL-AFSPYV----QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD-   85 (239)
T ss_dssp             HHHHHHTCCTTCEEEEESCTTSHHHH-HHGGGS----SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT-
T ss_pred             hHHHHhCcCCCCEEEEEccCcCHHHH-HHHHhC----CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCC-
Confidence            44555666889999999999999994 444332    48999999999999999886   3367999999998866544 


Q ss_pred             ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646        101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                        ++||+|++..++||++++..+++++.++|||||.+++....
T Consensus        86 --~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  126 (239)
T 1xxl_A           86 --DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY  126 (239)
T ss_dssp             --TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             --CcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence              89999999999999999999999999999999999987643

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.64  E-value=1.7e-15  Score=146.07  Aligned_cols=121  Identities=14%  Similarity=0.183  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHhc----CCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEE
Q psy11646         16 LDAAKLLSQYIDQF----KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEF   87 (433)
Q Consensus        16 ~~~~~ll~~l~~~l----~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~   87 (433)
                      ....+.+..++..+    ...++.+|||||||+|..+..++. ..  + .+++|+|+|+.+++.|+++.    ...++++
T Consensus        61 ~~~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~--~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~  136 (297)
T 2o57_A           61 EASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVR-KF--G-VSIDCLNIAPVQNKRNEEYNNQAGLADNITV  136 (297)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHH-HH--C-CEEEEEESCHHHHHHHHHHHHHHTCTTTEEE
T ss_pred             HHHHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHH-Hh--C-CEEEEEeCCHHHHHHHHHHHHhcCCCcceEE
Confidence            44556667777777    667899999999999999955544 32  2 49999999999999999876    2357999


Q ss_pred             EEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         88 VVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        88 ~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      .++|+...++++   ++||+|++..+++|++++..+++++.++|||||.+++.++.
T Consensus       137 ~~~d~~~~~~~~---~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  189 (297)
T 2o57_A          137 KYGSFLEIPCED---NSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPM  189 (297)
T ss_dssp             EECCTTSCSSCT---TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEcCcccCCCCC---CCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence            999998876554   89999999999999999999999999999999999998754

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.63  E-value=5.1e-15  Score=135.51  Aligned_cols=112  Identities=21%  Similarity=0.276  Sum_probs=91.9

Q ss_pred             HHHHHhcC-CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccc
Q psy11646         23 SQYIDQFK-WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIF  101 (433)
Q Consensus        23 ~~l~~~l~-~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~  101 (433)
                      ..++..+. ..++.+|||||||+|.++..+ +..   + .+++|+|+|+.+++.|++. ...++++.++|+.+. .+.  
T Consensus        35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l-~~~---~-~~v~~~D~s~~~~~~a~~~-~~~~~~~~~~d~~~~-~~~--  105 (218)
T 3ou2_A           35 PAALERLRAGNIRGDVLELASGTGYWTRHL-SGL---A-DRVTALDGSAEMIAEAGRH-GLDNVEFRQQDLFDW-TPD--  105 (218)
T ss_dssp             HHHHHHHTTTTSCSEEEEESCTTSHHHHHH-HHH---S-SEEEEEESCHHHHHHHGGG-CCTTEEEEECCTTSC-CCS--
T ss_pred             HHHHHHHhcCCCCCeEEEECCCCCHHHHHH-Hhc---C-CeEEEEeCCHHHHHHHHhc-CCCCeEEEecccccC-CCC--
Confidence            34444444 457789999999999999444 433   2 5999999999999999984 346899999999876 333  


Q ss_pred             cCcEeEEEEcccccchhhH--HHHHHHHHHhccCCCEEEEEeccC
Q psy11646        102 LAKFNKIFSFYCLHWVQDQ--RQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       102 ~~~fD~Vis~~~l~~~~d~--~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                       ++||+|++..++||+++.  ..+++++.++|+|||.+++.....
T Consensus       106 -~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  149 (218)
T 3ou2_A          106 -RQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD  149 (218)
T ss_dssp             -SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             -CceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence             899999999999999875  889999999999999999987654

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.8e-15  Score=146.23  Aligned_cols=132  Identities=23%  Similarity=0.381  Sum_probs=100.8

Q ss_pred             chhhhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--
Q psy11646          3 KATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--   80 (433)
Q Consensus         3 ~a~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--   80 (433)
                      +++.|++.++.......+.+   .... ..++.+|||||||+|..+..++ ...+.+ .+|+|+|+|+.+++.|+++.  
T Consensus        10 ~~~~y~~~rp~y~~~~~~~l---~~~~-~~~~~~vLDiGcG~G~~~~~la-~~~~~~-~~v~gvD~s~~~~~~a~~~~~~   83 (299)
T 3g5t_A           10 NSERYSSSRPSYPSDFYKMI---DEYH-DGERKLLVDVGCGPGTATLQMA-QELKPF-EQIIGSDLSATMIKTAEVIKEG   83 (299)
T ss_dssp             CHHHHHHHSCCCCHHHHHHH---HHHC-CSCCSEEEEETCTTTHHHHHHH-HHSSCC-SEEEEEESCHHHHHHHHHHHHH
T ss_pred             ChHHHhhcCCCCCHHHHHHH---HHHh-cCCCCEEEEECCCCCHHHHHHH-HhCCCC-CEEEEEeCCHHHHHHHHHHHHh
Confidence            56677776665544433333   3322 2578999999999999995444 333122 59999999999999999986  


Q ss_pred             C---CCCeEEEEecccCCcccc---cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         81 T---NPKLEFVVANIADQNLES---IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        81 ~---~~~i~~~~~Di~~~~l~~---~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .   ..++++.++|+++.+++.   ...++||+|++..++||+ ++..+++++.++|+|||.+++..
T Consensus        84 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~  149 (299)
T 3g5t_A           84 SPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWG  149 (299)
T ss_dssp             CC-CCTTEEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCCCceEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEe
Confidence            2   478999999998865432   112689999999999999 99999999999999999998854

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.63  E-value=2.2e-15  Score=138.54  Aligned_cols=112  Identities=17%  Similarity=0.280  Sum_probs=88.3

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC-C-------CCeEEEEecccCC
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT-N-------PKLEFVVANIADQ   95 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~-~-------~~i~~~~~Di~~~   95 (433)
                      .+.+.+...++.+|||||||+|.++ ..+++..+.  .+++|+|+|+.+++.|++++. .       .++++.++|+...
T Consensus        20 ~l~~~l~~~~~~~vLDiGcG~G~~~-~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~   96 (217)
T 3jwh_A           20 GVVAALKQSNARRVIDLGCGQGNLL-KILLKDSFF--EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ   96 (217)
T ss_dssp             HHHHHHHHTTCCEEEEETCTTCHHH-HHHHHCTTC--SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCHHH-HHHHhhCCC--CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc
Confidence            3333333357889999999999999 455544333  499999999999999999862 1       1799999998665


Q ss_pred             cccccccCcEeEEEEcccccchhhH--HHHHHHHHHhccCCCEEEEEe
Q psy11646         96 NLESIFLAKFNKIFSFYCLHWVQDQ--RQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        96 ~l~~~~~~~fD~Vis~~~l~~~~d~--~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +.+.   ++||+|++..+++|+++.  ..+++++.++|||||.++++.
T Consensus        97 ~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~  141 (217)
T 3jwh_A           97 DKRF---HGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP  141 (217)
T ss_dssp             CGGG---CSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             cccC---CCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            4433   789999999999999855  889999999999999766654

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.63  E-value=3.4e-15  Score=143.19  Aligned_cols=172  Identities=17%  Similarity=0.258  Sum_probs=117.3

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC-CCeEEEEecccCC
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN-PKLEFVVANIADQ   95 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~-~~i~~~~~Di~~~   95 (433)
                      +.+..++..+.. ++.+|||||||+|.++..++. .   + .+++|+|+|+.+++.|++++   +. .++++.++|+.+.
T Consensus        56 ~~l~~~l~~~~~-~~~~vLDiGcG~G~~~~~l~~-~---~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  129 (285)
T 4htf_A           56 QDLDRVLAEMGP-QKLRVLDAGGGEGQTAIKMAE-R---G-HQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDV  129 (285)
T ss_dssp             HHHHHHHHHTCS-SCCEEEEETCTTCHHHHHHHH-T---T-CEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGT
T ss_pred             HHHHHHHHhcCC-CCCEEEEeCCcchHHHHHHHH-C---C-CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHh
Confidence            345566666653 368999999999999944443 2   2 59999999999999999987   21 5799999999875


Q ss_pred             cccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeecccc
Q psy11646         96 NLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFT  175 (433)
Q Consensus        96 ~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~pl~  175 (433)
                      +  ...+++||+|++..+++|++++..+++++.++|||||.+++..+........  ... .+.|......       .+
T Consensus       130 ~--~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--~~~-~~~~~~~~~~-------~~  197 (285)
T 4htf_A          130 A--SHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMH--NMV-AGNFDYVQAG-------MP  197 (285)
T ss_dssp             G--GGCSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHH--HHH-TTCHHHHHTT-------CC
T ss_pred             h--hhcCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHH--HHH-hcCHHHHhhh-------cc
Confidence            4  2234899999999999999999999999999999999999987654331111  110 1222111100       00


Q ss_pred             CceEEEccccccchHHHHHHhcCCCCCeEEEecC
Q psy11646        176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDG  209 (433)
Q Consensus       176 gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~  209 (433)
                      .............+..++..++...++.++-..+
T Consensus       198 ~~~~~~~~~~~~~~~~~l~~~l~~aGf~v~~~~~  231 (285)
T 4htf_A          198 KKKKRTLSPDYPRDPTQVYLWLEEAGWQIMGKTG  231 (285)
T ss_dssp             CC----CCCSCCBCHHHHHHHHHHTTCEEEEEEE
T ss_pred             ccccccCCCCCCCCHHHHHHHHHHCCCceeeeee
Confidence            0001111223345678888888888888875443

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.62  E-value=1.2e-15  Score=144.73  Aligned_cols=126  Identities=14%  Similarity=0.291  Sum_probs=98.5

Q ss_pred             chhhhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC
Q psy11646          3 KATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN   82 (433)
Q Consensus         3 ~a~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~   82 (433)
                      .+..|++......    .+...+.+.+...++.+|||||||+|.++..++.    .+ .+|+|+|+|+.|++.|+++.  
T Consensus         8 ~a~~y~~~~~~~~----~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~----~~-~~v~gvD~s~~~~~~a~~~~--   76 (261)
T 3ege_A            8 IGKQYSQTRVPDI----RIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN----QG-LFVYAVEPSIVMRQQAVVHP--   76 (261)
T ss_dssp             -----CCSBCCCH----HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT----TT-CEEEEECSCHHHHHSSCCCT--
T ss_pred             HHHHHhhcccccH----HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh----CC-CEEEEEeCCHHHHHHHHhcc--
Confidence            3556666555444    3445556666667889999999999999954443    23 59999999999999888764  


Q ss_pred             CCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646         83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        83 ~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                       ++++.++|+++.++++   ++||+|++..++||++++..++++++++|| ||.+++.....
T Consensus        77 -~~~~~~~d~~~~~~~~---~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~  133 (261)
T 3ege_A           77 -QVEWFTGYAENLALPD---KSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDI  133 (261)
T ss_dssp             -TEEEECCCTTSCCSCT---TCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECG
T ss_pred             -CCEEEECchhhCCCCC---CCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCC
Confidence             8999999998876554   899999999999999999999999999999 99888876543

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.62  E-value=1.3e-15  Score=141.12  Aligned_cols=107  Identities=24%  Similarity=0.459  Sum_probs=89.9

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC--------CCeEEEEecccCCcccccccC
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN--------PKLEFVVANIADQNLESIFLA  103 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~--------~~i~~~~~Di~~~~l~~~~~~  103 (433)
                      +++.+|||+|||+|.++..++. .   + .+++|+|+|+.+++.|+++...        .++++.++|+...+++.   +
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~-~---~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~  100 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELAS-K---G-YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHD---S  100 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHH-T---T-CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCT---T
T ss_pred             CCCCeEEEECCCCCHHHHHHHh-C---C-CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCC---C
Confidence            5788999999999999954444 2   2 5999999999999999998722        25789999998766544   8


Q ss_pred             cEeEEEEcccccchhhHH---HHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        104 KFNKIFSFYCLHWVQDQR---QAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       104 ~fD~Vis~~~l~~~~d~~---~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      +||+|++..+++|+.+..   .+++++.++|+|||.+++..+....
T Consensus       101 ~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  146 (235)
T 3sm3_A          101 SFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNW  146 (235)
T ss_dssp             CEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCT
T ss_pred             ceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcch
Confidence            999999999999998776   8999999999999999998765543

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.62  E-value=3.2e-15  Score=143.57  Aligned_cols=116  Identities=20%  Similarity=0.389  Sum_probs=96.0

Q ss_pred             HHHHHHhc-CCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCccc
Q psy11646         22 LSQYIDQF-KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLE   98 (433)
Q Consensus        22 l~~l~~~l-~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~   98 (433)
                      +..+++.+ ...++.+|||||||+|.++ ..++...+.+ .+|+|+|+|+.+++.|+++.  ...++++.++|+.+.+++
T Consensus        10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~-~~l~~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~   87 (284)
T 3gu3_A           10 VSFLVNTVWKITKPVHIVDYGCGYGYLG-LVLMPLLPEG-SKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN   87 (284)
T ss_dssp             HHHHHHTTSCCCSCCEEEEETCTTTHHH-HHHTTTSCTT-CEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS
T ss_pred             HHHHHHHHhccCCCCeEEEecCCCCHHH-HHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcC
Confidence            33344443 3457899999999999999 5556555543 59999999999999999987  234899999999886543


Q ss_pred             ccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                          ++||+|++..+++|++++..++++++++|||||.+++..+.
T Consensus        88 ----~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           88 ----DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             ----SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ----CCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence                78999999999999999999999999999999999988754

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.62  E-value=2.3e-15  Score=138.48  Aligned_cols=104  Identities=16%  Similarity=0.354  Sum_probs=85.3

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC--------CCeEEEEecccCCcccccccC
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN--------PKLEFVVANIADQNLESIFLA  103 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~--------~~i~~~~~Di~~~~l~~~~~~  103 (433)
                      .++.+|||||||+|.++ ..++...+.  .+++|+|+|+.+++.|++++..        .++++.++|+...+.+.   +
T Consensus        28 ~~~~~vLDiGcG~G~~~-~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~---~  101 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLL-SLLLKDKSF--EQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRF---S  101 (219)
T ss_dssp             TTCCEEEEETCTTCHHH-HHHHTSTTC--CEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGG---T
T ss_pred             cCCCEEEEecCCCCHHH-HHHHhcCCC--CEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccccc---C
Confidence            56889999999999999 555544433  4999999999999999998621        17999999997654443   8


Q ss_pred             cEeEEEEcccccchhhH--HHHHHHHHHhccCCCEEEEEe
Q psy11646        104 KFNKIFSFYCLHWVQDQ--RQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       104 ~fD~Vis~~~l~~~~d~--~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +||+|++..+++|+++.  ..+++++.++|||||.++.+.
T Consensus       102 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  141 (219)
T 3jwg_A          102 GYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTP  141 (219)
T ss_dssp             TCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             CCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence            99999999999999855  789999999999999665543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.62  E-value=3.4e-15  Score=141.83  Aligned_cols=116  Identities=16%  Similarity=0.266  Sum_probs=95.4

Q ss_pred             HHHHHHHHhcC-CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccC
Q psy11646         20 KLLSQYIDQFK-WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIAD   94 (433)
Q Consensus        20 ~ll~~l~~~l~-~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~   94 (433)
                      ..+..++..+. .+++.+|||||||+|.++..+ +.. +.  .+++|+|+|+.+++.|+++.   + ..++++.++|+.+
T Consensus        32 ~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~l-a~~-~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  107 (267)
T 3kkz_A           32 EVTLKALSFIDNLTEKSLIADIGCGTGGQTMVL-AGH-VT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDD  107 (267)
T ss_dssp             HHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHH-HTT-CS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             HHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHH-Hhc-cC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhh
Confidence            34445556655 567899999999999999544 433 22  49999999999999999987   2 2569999999988


Q ss_pred             CcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         95 QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        95 ~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      .+++.   ++||+|++..+++|+ ++..+++++.++|||||.+++..+.
T Consensus       108 ~~~~~---~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~  152 (267)
T 3kkz_A          108 LPFRN---EELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECS  152 (267)
T ss_dssp             CCCCT---TCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred             CCCCC---CCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEee
Confidence            66544   899999999999999 8899999999999999999998653

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.62  E-value=4e-15  Score=136.47  Aligned_cols=107  Identities=24%  Similarity=0.406  Sum_probs=89.8

Q ss_pred             hcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcccccccCcEe
Q psy11646         28 QFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLESIFLAKFN  106 (433)
Q Consensus        28 ~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~~~~~~fD  106 (433)
                      .+...++.+|||+|||+|.++. .++..   + .+++|+|+|+.+++.|+++. ...++++.++|+.+.+ +   .++||
T Consensus        46 ~~~~~~~~~vLDiGcG~G~~~~-~l~~~---~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~---~~~fD  116 (216)
T 3ofk_A           46 SLSSGAVSNGLEIGCAAGAFTE-KLAPH---C-KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-T---AELFD  116 (216)
T ss_dssp             HTTTSSEEEEEEECCTTSHHHH-HHGGG---E-EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-C---SCCEE
T ss_pred             HcccCCCCcEEEEcCCCCHHHH-HHHHc---C-CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-C---CCCcc
Confidence            4455678899999999999994 44432   2 58999999999999999998 4458999999998865 2   38999


Q ss_pred             EEEEcccccchhhH---HHHHHHHHHhccCCCEEEEEecc
Q psy11646        107 KIFSFYCLHWVQDQ---RQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       107 ~Vis~~~l~~~~d~---~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      +|+++.++||++++   ..+++++.++|||||.+++..+.
T Consensus       117 ~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  156 (216)
T 3ofk_A          117 LIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR  156 (216)
T ss_dssp             EEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             EEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            99999999999876   56799999999999999987643

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.61  E-value=3.7e-15  Score=144.33  Aligned_cols=122  Identities=20%  Similarity=0.288  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEe
Q psy11646         15 QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVA   90 (433)
Q Consensus        15 ~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~   90 (433)
                      .......+..+++.+..+++.+|||||||+|.++..++. ..+   .+|+|+|+|+.+++.|+++.   + ..++++.++
T Consensus        54 ~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~-~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~  129 (302)
T 3hem_A           54 EEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVA-EYD---VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ  129 (302)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHH-HHC---CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEEC
T ss_pred             HHHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHH-hCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC
Confidence            345556778888888888999999999999999954443 322   48999999999999999987   2 237999999


Q ss_pred             cccCCcccccccCcEeEEEEcccccchhhH---------HHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646         91 NIADQNLESIFLAKFNKIFSFYCLHWVQDQ---------RQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus        91 Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~---------~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      |+.+.      +++||+|++..+++|++++         ..+++++.++|||||.+++.......
T Consensus       130 d~~~~------~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  188 (302)
T 3hem_A          130 GWEEF------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPD  188 (302)
T ss_dssp             CGGGC------CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCC
T ss_pred             CHHHc------CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccC
Confidence            98764      2899999999999999554         79999999999999999998765443

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.61  E-value=4.2e-15  Score=136.64  Aligned_cols=111  Identities=25%  Similarity=0.418  Sum_probs=91.9

Q ss_pred             HHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCc
Q psy11646         25 YIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAK  104 (433)
Q Consensus        25 l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~  104 (433)
                      +++.+...++.+|||+|||+|.++..++. .   + .+++|+|+|+.+++.|+++.. .++++.++|+...+.+    ++
T Consensus        37 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~-~---~-~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~d~~~~~~~----~~  106 (220)
T 3hnr_A           37 ILEDVVNKSFGNVLEFGVGTGNLTNKLLL-A---G-RTVYGIEPSREMRMIAKEKLP-KEFSITEGDFLSFEVP----TS  106 (220)
T ss_dssp             HHHHHHHTCCSEEEEECCTTSHHHHHHHH-T---T-CEEEEECSCHHHHHHHHHHSC-TTCCEESCCSSSCCCC----SC
T ss_pred             HHHHhhccCCCeEEEeCCCCCHHHHHHHh-C---C-CeEEEEeCCHHHHHHHHHhCC-CceEEEeCChhhcCCC----CC
Confidence            33333345788999999999999954443 2   2 599999999999999999874 5899999999886543    78


Q ss_pred             EeEEEEcccccchhhHHH--HHHHHHHhccCCCEEEEEeccCC
Q psy11646        105 FNKIFSFYCLHWVQDQRQ--AISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus       105 fD~Vis~~~l~~~~d~~~--~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      ||+|++..+++|+++...  +++++.++|||||.+++.++...
T Consensus       107 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  149 (220)
T 3hnr_A          107 IDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFA  149 (220)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBS
T ss_pred             eEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence            999999999999988776  99999999999999999875443

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.61  E-value=4.8e-15  Score=139.21  Aligned_cols=117  Identities=21%  Similarity=0.298  Sum_probs=96.7

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcc
Q psy11646         19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNL   97 (433)
Q Consensus        19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l   97 (433)
                      ...+..++..+...++.+|||||||+|.++..++.. .   ..+++|+|+|+.+++.|+++. ...++++.++|+...++
T Consensus        79 ~~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~  154 (254)
T 1xtp_A           79 IEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTK-L---YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATL  154 (254)
T ss_dssp             HHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHH-H---CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCC
T ss_pred             HHHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHh-h---cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCC
Confidence            344556677776678899999999999999544442 2   248999999999999999997 33679999999987655


Q ss_pred             cccccCcEeEEEEcccccch--hhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         98 ESIFLAKFNKIFSFYCLHWV--QDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~--~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      +.   ++||+|++..+++|+  ++...+++++.++|||||.+++...
T Consensus       155 ~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          155 PP---NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             CS---SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CC---CCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            44   799999999999999  5688999999999999999999864

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.61  E-value=6.2e-15  Score=137.38  Aligned_cols=111  Identities=21%  Similarity=0.374  Sum_probs=93.4

Q ss_pred             HHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCc
Q psy11646         25 YIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAK  104 (433)
Q Consensus        25 l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~  104 (433)
                      +...+...++.+|||||||+|.++..++. .   +..+++|+|+|+.+++.|+++....++++.++|+...+++.   ++
T Consensus        35 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~---~~  107 (243)
T 3bkw_A           35 LRAMLPEVGGLRIVDLGCGFGWFCRWAHE-H---GASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQ---DS  107 (243)
T ss_dssp             HHHHSCCCTTCEEEEETCTTCHHHHHHHH-T---TCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCT---TC
T ss_pred             HHHhccccCCCEEEEEcCcCCHHHHHHHH-C---CCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCC---CC
Confidence            44555556789999999999999954443 2   21389999999999999999885568999999998765443   78


Q ss_pred             EeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646        105 FNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       105 fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ||+|++..+++|+++...+++++.++|+|||.+++..+
T Consensus       108 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  145 (243)
T 3bkw_A          108 FDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTE  145 (243)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeC
Confidence            99999999999999999999999999999999998764

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.60  E-value=3e-15  Score=141.01  Aligned_cols=115  Identities=16%  Similarity=0.321  Sum_probs=94.5

Q ss_pred             HHHHHHHHhc-CCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccC
Q psy11646         20 KLLSQYIDQF-KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIAD   94 (433)
Q Consensus        20 ~ll~~l~~~l-~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~   94 (433)
                      .....++..+ ..+++.+|||||||+|..+. .+++..+   .+++|+|+|+.+++.|+++.   + ..++++.++|+..
T Consensus        32 ~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~-~l~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  107 (257)
T 3f4k_A           32 EATRKAVSFINELTDDAKIADIGCGTGGQTL-FLADYVK---GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDN  107 (257)
T ss_dssp             HHHHHHHTTSCCCCTTCEEEEETCTTSHHHH-HHHHHCC---SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             HHHHHHHHHHhcCCCCCeEEEeCCCCCHHHH-HHHHhCC---CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhh
Confidence            4455556655 34678899999999999994 4444433   39999999999999999987   2 2459999999987


Q ss_pred             CcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         95 QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        95 ~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      .+++.   ++||+|++..+++|+ ++..+++++.++|||||.+++..+
T Consensus       108 ~~~~~---~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~  151 (257)
T 3f4k_A          108 LPFQN---EELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEA  151 (257)
T ss_dssp             CSSCT---TCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             CCCCC---CCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence            66554   899999999999999 789999999999999999999864

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.60  E-value=6.2e-15  Score=141.43  Aligned_cols=121  Identities=20%  Similarity=0.217  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEe
Q psy11646         15 QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVA   90 (433)
Q Consensus        15 ~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~   90 (433)
                      .......+..+++.+..+++.+|||||||+|.++..++...   + .+|+|+|+|+.+++.|+++.    ...++++.++
T Consensus        46 ~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~  121 (287)
T 1kpg_A           46 QEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY---D-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLA  121 (287)
T ss_dssp             HHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH---C-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEES
T ss_pred             HHHHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHc---C-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEC
Confidence            34555677788888888889999999999999995554332   2 49999999999999999986    1257999999


Q ss_pred             cccCCcccccccCcEeEEEEcccccch--hhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646         91 NIADQNLESIFLAKFNKIFSFYCLHWV--QDQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus        91 Di~~~~l~~~~~~~fD~Vis~~~l~~~--~d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      |+.+.+      ++||+|++..+++|+  ++...+++++.++|||||.+++..+...
T Consensus       122 d~~~~~------~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  172 (287)
T 1kpg_A          122 GWEQFD------EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGL  172 (287)
T ss_dssp             CGGGCC------CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred             ChhhCC------CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence            986532      689999999999999  6789999999999999999999876543

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.59  E-value=1.1e-14  Score=134.17  Aligned_cols=117  Identities=21%  Similarity=0.410  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccC
Q psy11646         17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIAD   94 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~   94 (433)
                      ....++..+.+.+  +++.+|||+|||+|.++ ..++..   + .+++|+|+|+.+++.|+++.  ...++++.++|+.+
T Consensus        24 ~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~-~~l~~~---~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~   96 (227)
T 1ve3_A           24 RIETLEPLLMKYM--KKRGKVLDLACGVGGFS-FLLEDY---G-FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK   96 (227)
T ss_dssp             HHHHHHHHHHHSC--CSCCEEEEETCTTSHHH-HHHHHT---T-CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTS
T ss_pred             HHHHHHHHHHHhc--CCCCeEEEEeccCCHHH-HHHHHc---C-CEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhc
Confidence            3445555555544  35789999999999999 444433   2 38999999999999999987  33689999999987


Q ss_pred             CcccccccCcEeEEEEccc--ccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         95 QNLESIFLAKFNKIFSFYC--LHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        95 ~~l~~~~~~~fD~Vis~~~--l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      .+++.   ++||+|+++.+  +++..+...+++++.++|+|||.+++..+.
T Consensus        97 ~~~~~---~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A           97 LSFED---KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             CCSCT---TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCCC---CcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            65443   78999999999  677778899999999999999999988654

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.59  E-value=5.3e-15  Score=138.30  Aligned_cols=120  Identities=20%  Similarity=0.320  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHhcC-CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC---CCCeEEEEecc
Q psy11646         17 DAAKLLSQYIDQFK-WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT---NPKLEFVVANI   92 (433)
Q Consensus        17 ~~~~ll~~l~~~l~-~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~---~~~i~~~~~Di   92 (433)
                      ....++..++..+. .+++.+|||||||+|.++. .++...   ..+++|+|+|+.+++.|+++..   ..++++.++|+
T Consensus        62 ~~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~-~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~  137 (241)
T 2ex4_A           62 SSRKFLQRFLREGPNKTGTSCALDCGAGIGRITK-RLLLPL---FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL  137 (241)
T ss_dssp             HHHHHHHGGGC----CCCCSEEEEETCTTTHHHH-HTTTTT---CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG
T ss_pred             hHHHHHHHHHHhcccCCCCCEEEEECCCCCHHHH-HHHHhc---CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcCh
Confidence            34455555555443 2368899999999999994 444322   2489999999999999999872   24688999998


Q ss_pred             cCCcccccccCcEeEEEEcccccchhhH--HHHHHHHHHhccCCCEEEEEecc
Q psy11646         93 ADQNLESIFLAKFNKIFSFYCLHWVQDQ--RQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        93 ~~~~l~~~~~~~fD~Vis~~~l~~~~d~--~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      ...+.+.   ++||+|++..+++|+++.  ..+++++.++|+|||.+++.++.
T Consensus       138 ~~~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  187 (241)
T 2ex4_A          138 QDFTPEP---DSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM  187 (241)
T ss_dssp             GGCCCCS---SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             hhcCCCC---CCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            8765443   689999999999999874  48999999999999999997654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.59  E-value=4.5e-15  Score=135.75  Aligned_cols=110  Identities=17%  Similarity=0.391  Sum_probs=91.0

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES   99 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~   99 (433)
                      ..+..++..+  +++.+|||||||+|.++..++. .   + .+++|+|+|+.+++.|+++.   ++.+..+|+...+ . 
T Consensus        32 ~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~-~---~-~~v~~vD~s~~~~~~a~~~~---~~~~~~~d~~~~~-~-   99 (211)
T 3e23_A           32 ATLTKFLGEL--PAGAKILELGCGAGYQAEAMLA-A---G-FDVDATDGSPELAAEASRRL---GRPVRTMLFHQLD-A-   99 (211)
T ss_dssp             HHHHHHHTTS--CTTCEEEESSCTTSHHHHHHHH-T---T-CEEEEEESCHHHHHHHHHHH---TSCCEECCGGGCC-C-
T ss_pred             HHHHHHHHhc--CCCCcEEEECCCCCHHHHHHHH-c---C-CeEEEECCCHHHHHHHHHhc---CCceEEeeeccCC-C-
Confidence            4455555554  4688999999999999954443 2   2 59999999999999999986   6788889988765 3 


Q ss_pred             cccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEecc
Q psy11646        100 IFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                        .++||+|++..+++|+.  +...+++++.++|||||.+++....
T Consensus       100 --~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  143 (211)
T 3e23_A          100 --IDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKS  143 (211)
T ss_dssp             --CSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             --CCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence              38999999999999997  7889999999999999999998643

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.59  E-value=1.3e-14  Score=135.14  Aligned_cols=113  Identities=22%  Similarity=0.382  Sum_probs=91.2

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC----CCeEEEEecccCCc
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN----PKLEFVVANIADQN   96 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~----~~i~~~~~Di~~~~   96 (433)
                      .+..++.....+ +.+|||||||+|.++. .++.   .+ .+|+|+|+|+.+++.|+++...    .++++.++|+.+.+
T Consensus        55 ~l~~~~~~~~~~-~~~vLDiGcG~G~~~~-~l~~---~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  128 (235)
T 3lcc_A           55 LIVHLVDTSSLP-LGRALVPGCGGGHDVV-AMAS---PE-RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR  128 (235)
T ss_dssp             HHHHHHHTTCSC-CEEEEEETCTTCHHHH-HHCB---TT-EEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC
T ss_pred             HHHHHHHhcCCC-CCCEEEeCCCCCHHHH-HHHh---CC-CeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC
Confidence            344555555444 4599999999999994 4443   23 6899999999999999998732    46999999998864


Q ss_pred             ccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         97 LESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        97 l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                       +.   ++||+|+++.++++++  +...+++++.++|+|||.+++....
T Consensus       129 -~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  173 (235)
T 3lcc_A          129 -PT---ELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYP  173 (235)
T ss_dssp             -CS---SCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             -CC---CCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEec
Confidence             22   6899999999999997  8899999999999999999987644

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.59  E-value=5.5e-15  Score=134.22  Aligned_cols=112  Identities=21%  Similarity=0.377  Sum_probs=92.7

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc
Q psy11646         19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE   98 (433)
Q Consensus        19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~   98 (433)
                      ..++..+...    .+.+|||+|||+|.++..++. .   + .+++|+|+|+.|++.|+++.  .++++.++|+.+.+++
T Consensus        31 ~~~l~~~~~~----~~~~vLDiGcG~G~~~~~l~~-~---~-~~v~gvD~s~~~~~~a~~~~--~~~~~~~~d~~~~~~~   99 (203)
T 3h2b_A           31 RVLIEPWATG----VDGVILDVGSGTGRWTGHLAS-L---G-HQIEGLEPATRLVELARQTH--PSVTFHHGTITDLSDS   99 (203)
T ss_dssp             HHHHHHHHHH----CCSCEEEETCTTCHHHHHHHH-T---T-CCEEEECCCHHHHHHHHHHC--TTSEEECCCGGGGGGS
T ss_pred             HHHHHHHhcc----CCCeEEEecCCCCHHHHHHHh-c---C-CeEEEEeCCHHHHHHHHHhC--CCCeEEeCcccccccC
Confidence            3455555543    278999999999999954443 2   2 48999999999999999986  6899999999886544


Q ss_pred             ccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      .   ++||+|++..+++|++  +...+++++.++|+|||.+++.....
T Consensus       100 ~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  144 (203)
T 3h2b_A          100 P---KRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSG  144 (203)
T ss_dssp             C---CCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred             C---CCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence            3   8999999999999996  88999999999999999999987544

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.59  E-value=2.5e-15  Score=144.38  Aligned_cols=149  Identities=19%  Similarity=0.171  Sum_probs=110.0

Q ss_pred             hcCCCCCCEEEEECCCC------ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEE-EEecccCCccccc
Q psy11646         28 QFKWTDNESVLDVGCGP------GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEF-VVANIADQNLESI  100 (433)
Q Consensus        28 ~l~~~~~~~VLDIGcG~------G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~-~~~Di~~~~l~~~  100 (433)
                      .+..+++.+|||+|||+      |.   .++++..+.+ .+|+|+|+|+.        .  .++++ +++|+.+.+++  
T Consensus        58 ~l~l~~g~~VLDLGcGsg~~~GpGs---~~~a~~~~~~-~~V~gvDis~~--------v--~~v~~~i~gD~~~~~~~--  121 (290)
T 2xyq_A           58 TLAVPYNMRVIHFGAGSDKGVAPGT---AVLRQWLPTG-TLLVDSDLNDF--------V--SDADSTLIGDCATVHTA--  121 (290)
T ss_dssp             CCCCCTTCEEEEESCCCTTSBCHHH---HHHHHHSCTT-CEEEEEESSCC--------B--CSSSEEEESCGGGCCCS--
T ss_pred             hcCCCCCCEEEEeCCCCCCCCCcHH---HHHHHHcCCC-CEEEEEECCCC--------C--CCCEEEEECccccCCcc--
Confidence            34567899999999955      65   2344444433 49999999997        1  46888 99999875433  


Q ss_pred             ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeeccccCceEE
Q psy11646        101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQV  180 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~pl~gv~~i  180 (433)
                        ++||+|+++...++.                                                               
T Consensus       122 --~~fD~Vvsn~~~~~~---------------------------------------------------------------  136 (290)
T 2xyq_A          122 --NKWDLIISDMYDPRT---------------------------------------------------------------  136 (290)
T ss_dssp             --SCEEEEEECCCCCC----------------------------------------------------------------
T ss_pred             --CcccEEEEcCCcccc---------------------------------------------------------------
Confidence              679999986321110                                                               


Q ss_pred             EccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHHHHHH
Q psy11646        181 QGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLET  260 (433)
Q Consensus       181 qgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~~~~~  260 (433)
                                                        |.+..|+..+.++...++..+.++|+|||.|++++|++.....+..
T Consensus       137 ----------------------------------g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~  182 (290)
T 2xyq_A          137 ----------------------------------KHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYK  182 (290)
T ss_dssp             ------------------------------------CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHH
T ss_pred             ----------------------------------ccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHH
Confidence                                              0000011111234456788999999999999999999999889999


Q ss_pred             HHhcc-cceeEEecCCCCcccccceeEEEeeccCC
Q psy11646        261 KFQIF-FENVSIAKPKSSRNSSIESFIVCQNYRPP  294 (433)
Q Consensus       261 ~l~~~-F~~v~~~KP~~sr~~s~E~~~v~~~~~~~  294 (433)
                      .++.+ |..|.+.   +||.+|.|.|++|++|+++
T Consensus       183 ~l~~~GF~~v~~~---asr~~s~e~~lv~~~~~~~  214 (290)
T 2xyq_A          183 LMGHFSWWTAFVT---NVNASSSEAFLIGANYLGK  214 (290)
T ss_dssp             HHTTEEEEEEEEE---GGGTTSSCEEEEEEEECSS
T ss_pred             HHHHcCCcEEEEE---EcCCCchheEEecCCccCC
Confidence            99988 9988888   8999999999999999976

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.58  E-value=4e-14  Score=130.41  Aligned_cols=124  Identities=17%  Similarity=0.260  Sum_probs=96.4

Q ss_pred             hhhhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCC
Q psy11646          4 ATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNP   83 (433)
Q Consensus         4 a~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~   83 (433)
                      ++.|+.............+..+....   ++.+|||||||+|.++. .++.       . +|+|+|+.+++.|+++    
T Consensus        21 ~~~y~~~~~~~~~~~~~~~~~l~~~~---~~~~vLDiG~G~G~~~~-~l~~-------~-~~vD~s~~~~~~a~~~----   84 (219)
T 1vlm_A           21 VNEYERWFLVHRFAYLSELQAVKCLL---PEGRGVEIGVGTGRFAV-PLKI-------K-IGVEPSERMAEIARKR----   84 (219)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHC---CSSCEEEETCTTSTTHH-HHTC-------C-EEEESCHHHHHHHHHT----
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHhC---CCCcEEEeCCCCCHHHH-HHHH-------H-hccCCCHHHHHHHHhc----
Confidence            45566554433333444444444433   37899999999999984 4431       2 9999999999999986    


Q ss_pred             CeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646         84 KLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus        84 ~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      ++++.++|+...+++.   ++||+|++..+++|++++..+++++.++|+|||.+++..+....
T Consensus        85 ~~~~~~~d~~~~~~~~---~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~  144 (219)
T 1vlm_A           85 GVFVLKGTAENLPLKD---ESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRES  144 (219)
T ss_dssp             TCEEEECBTTBCCSCT---TCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSS
T ss_pred             CCEEEEcccccCCCCC---CCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCCcc
Confidence            6899999998765443   78999999999999999999999999999999999998765543

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.58  E-value=4.2e-15  Score=143.33  Aligned_cols=113  Identities=18%  Similarity=0.251  Sum_probs=81.6

Q ss_pred             CCCCEEEEECCCCChhHHHHhc---ccCCCCCcEEEEEeCCHHHHHHHHhhc-C---CCCeEEE--EecccCCcc---cc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLL---PNLPKSVVKLVGLDVSPNMIKHAKNHH-T---NPKLEFV--VANIADQNL---ES   99 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~---~~~~~~~~~v~gvDiS~~~l~~A~~~~-~---~~~i~~~--~~Di~~~~l---~~   99 (433)
                      .++.+|||||||+|..+..++.   ...+.....++|+|+|+.|++.|+++. .   ..++.+.  .+++++.+.   ..
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            4678999999999987643332   222322013499999999999999886 2   2355544  444432210   00


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      +.+++||+|+++.++||++|+..++++++++|||||.+++.....
T Consensus       131 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  175 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG  175 (292)
T ss_dssp             TCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             cCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            124789999999999999999999999999999999999986543

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.58  E-value=2.9e-15  Score=142.40  Aligned_cols=109  Identities=16%  Similarity=0.265  Sum_probs=83.0

Q ss_pred             CCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CC--------------------------
Q psy11646         30 KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TN--------------------------   82 (433)
Q Consensus        30 ~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~--------------------------   82 (433)
                      ...++.+|||||||+|.++ .+++.   .+..+|+|+|+|+.|++.|++++ ..                          
T Consensus        52 ~~~~g~~vLDiGCG~G~~~-~~~~~---~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~  127 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQ-VLAAC---DSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEK  127 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGG-GTTGG---GTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHH
T ss_pred             CCCCCceEEEeCCCccHHH-HHHHH---hhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhH
Confidence            3457889999999999887 33332   23247999999999999998865 11                          


Q ss_pred             -----CCeE-EEEecccCC-cccccccCcEeEEEEcccccch----hhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         83 -----PKLE-FVVANIADQ-NLESIFLAKFNKIFSFYCLHWV----QDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        83 -----~~i~-~~~~Di~~~-~l~~~~~~~fD~Vis~~~l~~~----~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                           .++. +.++|+.+. ++++...++||+|+++.++||+    ++...++++++++|||||.+++...
T Consensus       128 ~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~  198 (263)
T 2a14_A          128 EEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT  198 (263)
T ss_dssp             HHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             HHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence                 0133 889999873 3322234789999999999986    5678899999999999999999753

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.58  E-value=6.5e-15  Score=134.18  Aligned_cols=106  Identities=23%  Similarity=0.369  Sum_probs=89.0

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      .++.+|||+|||+|..+..+++.   .+ .+++|+|+|+.|++.|+++.  ...++++.++|+...++++   ++||+|+
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~---~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~---~~fD~v~   94 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVE---DG-YKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKD---ESMSFVY   94 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHH---TT-CEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCT---TCEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHh---CC-CEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCC---CceeEEE
Confidence            56889999999999985355543   22 59999999999999999886  2357899999998866544   7899999


Q ss_pred             Ecccccch--hhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646        110 SFYCLHWV--QDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       110 s~~~l~~~--~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      +..+++|+  ++...+++++.++|+|||.+++.....
T Consensus        95 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  131 (209)
T 2p8j_A           95 SYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTT  131 (209)
T ss_dssp             ECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             EcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            99999999  788999999999999999999987654

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.58  E-value=8e-15  Score=129.32  Aligned_cols=106  Identities=19%  Similarity=0.271  Sum_probs=87.8

Q ss_pred             HHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcE
Q psy11646         26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKF  105 (433)
Q Consensus        26 ~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~f  105 (433)
                      ++.+...++.+|||+|||+|.++..++. .   . .+++|+|+|+.+++.|+++.  .++++..+|   .+++.   ++|
T Consensus        10 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~-~---~-~~v~~vD~s~~~~~~a~~~~--~~v~~~~~d---~~~~~---~~~   76 (170)
T 3i9f_A           10 LPNIFEGKKGVIVDYGCGNGFYCKYLLE-F---A-TKLYCIDINVIALKEVKEKF--DSVITLSDP---KEIPD---NSV   76 (170)
T ss_dssp             HHHHHSSCCEEEEEETCTTCTTHHHHHT-T---E-EEEEEECSCHHHHHHHHHHC--TTSEEESSG---GGSCT---TCE
T ss_pred             HHhcCcCCCCeEEEECCCCCHHHHHHHh-h---c-CeEEEEeCCHHHHHHHHHhC--CCcEEEeCC---CCCCC---Cce
Confidence            3334456788999999999999944443 2   2 38999999999999999984  689999888   33333   789


Q ss_pred             eEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646        106 NKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       106 D~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      |+|++..+++|++++..+++++.++|||||.+++.....
T Consensus        77 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  115 (170)
T 3i9f_A           77 DFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRK  115 (170)
T ss_dssp             EEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             EEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCc
Confidence            999999999999999999999999999999999986543

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.58  E-value=1.9e-14  Score=129.79  Aligned_cols=109  Identities=20%  Similarity=0.301  Sum_probs=89.7

Q ss_pred             HHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccc
Q psy11646         25 YIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIF  101 (433)
Q Consensus        25 l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~  101 (433)
                      +++.+...++.+|||+|||+|..+..++. .   + .+++|+|+|+.+++.|+++.   ...++++.++|+.+.++    
T Consensus        24 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~---~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~----   94 (199)
T 2xvm_A           24 VLEAVKVVKPGKTLDLGCGNGRNSLYLAA-N---G-YDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF----   94 (199)
T ss_dssp             HHHHTTTSCSCEEEEETCTTSHHHHHHHH-T---T-CEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC----
T ss_pred             HHHHhhccCCCeEEEEcCCCCHHHHHHHH-C---C-CeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC----
Confidence            33444556788999999999999954443 2   2 59999999999999999876   33479999999987654    


Q ss_pred             cCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEec
Q psy11646        102 LAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       102 ~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      .++||+|++..+++|++  +...+++++.++|+|||.+++...
T Consensus        95 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (199)
T 2xvm_A           95 DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA  137 (199)
T ss_dssp             CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence            38899999999999987  788999999999999999887653

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.57  E-value=2.3e-14  Score=139.58  Aligned_cols=122  Identities=15%  Similarity=0.280  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-C---CCCeEEEEe
Q psy11646         15 QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-T---NPKLEFVVA   90 (433)
Q Consensus        15 ~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~---~~~i~~~~~   90 (433)
                      .......+..+++.+...++.+|||||||+|.++..++. ..  + .+|+|+|+|+.+++.|+++. .   ..++++.++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~-~~--~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~  147 (318)
T 2fk8_A           72 EEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVE-RF--D-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQ  147 (318)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHH-HH--C-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES
T ss_pred             HHHHHHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHH-HC--C-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC
Confidence            344566777888888888899999999999999955444 32  2 49999999999999999987 1   246999999


Q ss_pred             cccCCcccccccCcEeEEEEcccccch--hhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646         91 NIADQNLESIFLAKFNKIFSFYCLHWV--QDQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus        91 Di~~~~l~~~~~~~fD~Vis~~~l~~~--~d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      |+.+.+      ++||+|++..+++|+  ++...+++++.++|||||.+++..+....
T Consensus       148 d~~~~~------~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  199 (318)
T 2fk8_A          148 GWEDFA------EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYH  199 (318)
T ss_dssp             CGGGCC------CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred             ChHHCC------CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence            987642      689999999999999  68899999999999999999998766543

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.57  E-value=1.6e-15  Score=145.92  Aligned_cols=115  Identities=22%  Similarity=0.331  Sum_probs=89.6

Q ss_pred             HHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-------CCCCeEEEEecccCCccc
Q psy11646         26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-------TNPKLEFVVANIADQNLE   98 (433)
Q Consensus        26 ~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-------~~~~i~~~~~Di~~~~l~   98 (433)
                      ...+...++.+|||||||+|.++..++. .   + .+|+|+|+|+.|++.|+++.       ...++.+..+|+...+..
T Consensus        50 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~-~---~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  124 (293)
T 3thr_A           50 LGLLRQHGCHRVLDVACGTGVDSIMLVE-E---G-FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD  124 (293)
T ss_dssp             HHHHHHTTCCEEEETTCTTSHHHHHHHH-T---T-CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH
T ss_pred             HHHhcccCCCEEEEecCCCCHHHHHHHH-C---C-CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccc
Confidence            3333335788999999999999955544 2   3 49999999999999998764       124678888888765400


Q ss_pred             ccccCcEeEEEEc-ccccchhh-------HHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646         99 SIFLAKFNKIFSF-YCLHWVQD-------QRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus        99 ~~~~~~fD~Vis~-~~l~~~~d-------~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      -...++||+|++. .+++|+.+       ...++++++++|||||.+++..+...
T Consensus       125 ~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  179 (293)
T 3thr_A          125 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYD  179 (293)
T ss_dssp             SCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred             cccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHH
Confidence            0123899999998 89999988       89999999999999999999876543

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.57  E-value=3.3e-14  Score=136.57  Aligned_cols=110  Identities=24%  Similarity=0.358  Sum_probs=89.7

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CC---CCeEEEEecccCCcccccccCcEe
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TN---PKLEFVVANIADQNLESIFLAKFN  106 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~---~~i~~~~~Di~~~~l~~~~~~~fD  106 (433)
                      ..++.+|||||||+|.++.. ++..   +..+++|+|+|+.+++.|+++. ..   .++++.++|+...++.  ..++||
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~-l~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~fD  135 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLK-YERA---GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD--LGKEFD  135 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHH-HHHH---TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC--CSSCEE
T ss_pred             CCCCCeEEEECCCCCHHHHH-HHHC---CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC--CCCCcC
Confidence            36788999999999999855 4433   2248999999999999999987 21   4689999999886552  237899


Q ss_pred             EEEEcccccc----hhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        107 KIFSFYCLHW----VQDQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       107 ~Vis~~~l~~----~~d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      +|++..++||    .++...+++++.++|+|||.+++..+....
T Consensus       136 ~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  179 (298)
T 1ri5_A          136 VISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDV  179 (298)
T ss_dssp             EEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHH
T ss_pred             EEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHH
Confidence            9999999987    567889999999999999999998766543

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.57  E-value=2e-14  Score=139.83  Aligned_cols=117  Identities=15%  Similarity=0.287  Sum_probs=96.5

Q ss_pred             HHHHHHHhcC-CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCC
Q psy11646         21 LLSQYIDQFK-WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQ   95 (433)
Q Consensus        21 ll~~l~~~l~-~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~   95 (433)
                      ....+++.+. ..++.+|||||||+|.++..++. ..  + .+|+|+|+|+.+++.|+++.   + ..++++.++|+.+.
T Consensus       104 ~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~-~~--~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  179 (312)
T 3vc1_A          104 QAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHR-RF--G-SRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT  179 (312)
T ss_dssp             HHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHH-HH--C-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             HHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHH-Hc--C-CEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC
Confidence            3345667776 67899999999999999954444 32  2 58999999999999999986   2 24799999999886


Q ss_pred             cccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646         96 NLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus        96 ~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      +++.   ++||+|++..+++|+ ++..+++++.++|||||.+++......
T Consensus       180 ~~~~---~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~  225 (312)
T 3vc1_A          180 PFDK---GAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWN  225 (312)
T ss_dssp             CCCT---TCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             CCCC---CCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEcccc
Confidence            6544   899999999999999 599999999999999999999875443

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.57  E-value=1.1e-14  Score=146.03  Aligned_cols=109  Identities=19%  Similarity=0.282  Sum_probs=90.6

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-----------CCCCeEEEEecccCC----
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-----------TNPKLEFVVANIADQ----   95 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-----------~~~~i~~~~~Di~~~----   95 (433)
                      ..++.+|||||||+|.++. .++.....+ .+|+|+|+|+.|++.|+++.           ...++++.++|+.+.    
T Consensus        81 ~~~~~~VLDlGcG~G~~~~-~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~  158 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVY-LASKLVGEH-GKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAE  158 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHH-HHHHHHTTT-CEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCB
T ss_pred             CCCCCEEEEecCccCHHHH-HHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcc
Confidence            3578899999999999994 444443222 49999999999999999874           126899999999875    


Q ss_pred             --cccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646         96 --NLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        96 --~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                        +++   +++||+|+++.+++|++++..++++++++|||||++++.+...
T Consensus       159 ~~~~~---~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  206 (383)
T 4fsd_A          159 PEGVP---DSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYA  206 (383)
T ss_dssp             SCCCC---TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             cCCCC---CCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecc
Confidence              343   3899999999999999999999999999999999999976543

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=99.57  E-value=2.2e-14  Score=134.57  Aligned_cols=85  Identities=22%  Similarity=0.255  Sum_probs=79.3

Q ss_pred             CCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCC-CeEEEEEeec--CCHHHHHHHHhcccceeEEecCCC
Q psy11646        200 EKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPG-GTFVGKIFRS--RNVVCLETKFQIFFENVSIAKPKS  276 (433)
Q Consensus       200 ~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~g-G~fv~Kif~g--~~~~~~~~~l~~~F~~v~~~KP~~  276 (433)
                      .++|+++||++ ..+|....|+.++..    +|+++..+|++| |.|++|+|.+  .++..+...++..|..+.+.||. 
T Consensus       159 ~~~D~ivcDig-eSs~~~~ve~~Rtl~----vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq~~fgg~lvr~P~-  232 (321)
T 3lkz_A          159 ECCDTLLCDIG-ESSSSAEVEEHRTIR----VLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQRRYGGGLVRNPL-  232 (321)
T ss_dssp             CCCSEEEECCC-CCCSCHHHHHHHHHH----HHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHHHHHCCEEECCTT-
T ss_pred             CCCCEEEEECc-cCCCChhhhhhHHHH----HHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHHHHhCCEeEeCCC-
Confidence            46899999999 999999999999877    999999999999 9999999999  88889999999999999999999 


Q ss_pred             CcccccceeEEEee
Q psy11646        277 SRNSSIESFIVCQN  290 (433)
Q Consensus       277 sr~~s~E~~~v~~~  290 (433)
                      ||++|.|.|+|.-.
T Consensus       233 SRnst~EmY~vsGa  246 (321)
T 3lkz_A          233 SRNSTHEMYWVSRA  246 (321)
T ss_dssp             SCTTCCCEEEETTC
T ss_pred             CCCCcceEEEEecC
Confidence            99999999999543

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.57  E-value=1.5e-14  Score=136.66  Aligned_cols=103  Identities=18%  Similarity=0.215  Sum_probs=84.1

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC--------------------CCCeEEEEec
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT--------------------NPKLEFVVAN   91 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~--------------------~~~i~~~~~D   91 (433)
                      .++.+|||+|||+|..+ ..|++   .+ .+|+|+|+|+.|++.|+++..                    ..++++.++|
T Consensus        67 ~~~~~vLD~GCG~G~~~-~~La~---~G-~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D  141 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEM-KWFAD---RG-HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCS  141 (252)
T ss_dssp             CCSCEEEETTCTTCTHH-HHHHH---TT-CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESC
T ss_pred             CCCCeEEEeCCCCcHHH-HHHHH---CC-CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECc
Confidence            47889999999999999 45553   23 599999999999999987652                    2579999999


Q ss_pred             ccCCcccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEe
Q psy11646         92 IADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        92 i~~~~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +.+.+..  ..++||+|++..++++++  +...+++++.++|||||++++..
T Consensus       142 ~~~l~~~--~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~  191 (252)
T 2gb4_A          142 IFDLPRA--NIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV  191 (252)
T ss_dssp             TTTGGGG--CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccCCcc--cCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            9875432  126899999999998885  45678999999999999997654

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.56  E-value=2.7e-14  Score=133.04  Aligned_cols=130  Identities=22%  Similarity=0.353  Sum_probs=97.1

Q ss_pred             hhhhhhhhh--hcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-
Q psy11646          4 ATLYETNNS--MQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-   80 (433)
Q Consensus         4 a~~Y~~~~~--~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-   80 (433)
                      +..|+....  .......+.+..++... ..++.+|||+|||+|.++..+ ++.   + .+++|+|+|+.|++.|+++. 
T Consensus         7 a~~yd~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l-~~~---~-~~~~~~D~s~~~~~~a~~~~~   80 (246)
T 1y8c_A            7 AHIYDKLIRADVDYKKWSDFIIEKCVEN-NLVFDDYLDLACGTGNLTENL-CPK---F-KNTWAVDLSQEMLSEAENKFR   80 (246)
T ss_dssp             HHHHHHHTTCSCCHHHHHHHHHHHHHTT-TCCTTEEEEETCTTSTTHHHH-GGG---S-SEEEEECSCHHHHHHHHHHHH
T ss_pred             HHHHHHHccccccHHHHHHHHHHHHHHh-CCCCCeEEEeCCCCCHHHHHH-HHC---C-CcEEEEECCHHHHHHHHHHHh
Confidence            455655433  12223333344444332 136789999999999999444 432   2 58999999999999999987 


Q ss_pred             -CCCCeEEEEecccCCcccccccCcEeEEEEcc-cccch---hhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         81 -TNPKLEFVVANIADQNLESIFLAKFNKIFSFY-CLHWV---QDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        81 -~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~-~l~~~---~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                       ...++++.++|+...+++    ++||+|++.. +++|+   ++...++++++++|+|||.+++....
T Consensus        81 ~~~~~~~~~~~d~~~~~~~----~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  144 (246)
T 1y8c_A           81 SQGLKPRLACQDISNLNIN----RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS  144 (246)
T ss_dssp             HTTCCCEEECCCGGGCCCS----CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             hcCCCeEEEecccccCCcc----CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence             223799999999876543    7899999998 99999   67889999999999999999986654

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.56  E-value=1.7e-14  Score=129.86  Aligned_cols=108  Identities=8%  Similarity=0.004  Sum_probs=87.6

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKI  108 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~V  108 (433)
                      .++.+|||+|||+|.++..+++    .+..+|+|+|+|+.|++.|++++   ...++++.++|+.+.. .....++||+|
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~fD~i  117 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALS----RGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVV-AAGTTSPVDLV  117 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHH----TTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHH-HHCCSSCCSEE
T ss_pred             CCCCEEEEeCCCcCHHHHHHHH----CCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHH-hhccCCCccEE
Confidence            4688999999999999954554    22248999999999999999987   3368999999987642 11224789999


Q ss_pred             EEcccccch-hhHHHHHHHHHH--hccCCCEEEEEeccC
Q psy11646        109 FSFYCLHWV-QDQRQAISNIYN--LLMPGGEVLLLLNAF  144 (433)
Q Consensus       109 is~~~l~~~-~d~~~~l~~i~~--~LkpGG~lll~~~~~  144 (433)
                      +++.++++. ++...++..+.+  +|+|||.+++.....
T Consensus       118 ~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          118 LADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             EECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             EECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence            999998885 678899999999  999999999976543

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.55  E-value=8.5e-15  Score=141.34  Aligned_cols=106  Identities=25%  Similarity=0.474  Sum_probs=85.7

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC------------------------------
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN------------------------------   82 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~------------------------------   82 (433)
                      ++.+|||||||+|.++ ..++..++.  .+|+|+|+|+.|++.|+++...                              
T Consensus        46 ~~~~VLDiGCG~G~~~-~~la~~~~~--~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLT-LSIACKWGP--SRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRK  122 (292)
T ss_dssp             TTSEEEEESCTTCHHH-HHHHHHTCC--SEEEEEESCHHHHHHHHHTC--------------------------------
T ss_pred             CCCcEEEeCCCCCHHH-HHHHHHcCC--CEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence            6889999999999999 455555443  4999999999999999998611                              


Q ss_pred             -------------------------------CCeEEEEecccCCc--ccccccCcEeEEEEcccccchh------hHHHH
Q psy11646         83 -------------------------------PKLEFVVANIADQN--LESIFLAKFNKIFSFYCLHWVQ------DQRQA  123 (433)
Q Consensus        83 -------------------------------~~i~~~~~Di~~~~--l~~~~~~~fD~Vis~~~l~~~~------d~~~~  123 (433)
                                                     .+++|.++|+....  +.....++||+|++..+++|+.      +...+
T Consensus       123 ~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~  202 (292)
T 3g07_A          123 RSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRM  202 (292)
T ss_dssp             -------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHH
Confidence                                           47999999987653  1112348999999999998774      67889


Q ss_pred             HHHHHHhccCCCEEEEEe
Q psy11646        124 ISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       124 l~~i~~~LkpGG~lll~~  141 (433)
                      +++++++|+|||.+++..
T Consensus       203 l~~~~~~LkpGG~lil~~  220 (292)
T 3g07_A          203 FRRIYRHLRPGGILVLEP  220 (292)
T ss_dssp             HHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHhCCCcEEEEec
Confidence            999999999999998853

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.55  E-value=6.8e-14  Score=127.35  Aligned_cols=124  Identities=14%  Similarity=0.192  Sum_probs=96.2

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccc
Q psy11646         23 SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLES   99 (433)
Q Consensus        23 ~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~   99 (433)
                      ..++..+...++.+|||+|||+|.++ ..++...+.  .+++|+|+|+.+++.|+++.   +..++++.++|+.+.....
T Consensus        30 ~~~l~~l~~~~~~~vLDiG~G~G~~~-~~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~  106 (204)
T 3e05_A           30 AVTLSKLRLQDDLVMWDIGAGSASVS-IEASNLMPN--GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDL  106 (204)
T ss_dssp             HHHHHHTTCCTTCEEEEETCTTCHHH-HHHHHHCTT--SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTS
T ss_pred             HHHHHHcCCCCCCEEEEECCCCCHHH-HHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcC
Confidence            44566667788999999999999999 455555544  49999999999999999987   3468999999986542221


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhh
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLS  155 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~  155 (433)
                         ++||+|++..+++   +...+++++.++|+|||.+++..............+.
T Consensus       107 ---~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~  156 (204)
T 3e05_A          107 ---PDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLE  156 (204)
T ss_dssp             ---CCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHH
T ss_pred             ---CCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHH
Confidence               6799999998876   6788999999999999999998765544444444443

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.55  E-value=1.8e-14  Score=139.82  Aligned_cols=110  Identities=18%  Similarity=0.226  Sum_probs=89.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC----CCCeEEEEecccCCcccccccCcEe
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----NPKLEFVVANIADQNLESIFLAKFN  106 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~----~~~i~~~~~Di~~~~l~~~~~~~fD  106 (433)
                      .+++.+|||||||+|..+..++....+.  .+++|+|+|+.+++.|+++..    ..++++.++|+.+.+++    ++||
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~fD  189 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPG--VQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR----EGYD  189 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTT--CEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC----SCEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCC--CeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc----CCeE
Confidence            4678999999999999984332233333  499999999999999999872    23499999999886543    7999


Q ss_pred             EEEEcccccchhhHHH---HHHHHHHhccCCCEEEEEeccCCc
Q psy11646        107 KIFSFYCLHWVQDQRQ---AISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       107 ~Vis~~~l~~~~d~~~---~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      +|+++.+++|+++...   +++++.++|||||.+++......+
T Consensus       190 ~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  232 (305)
T 3ocj_A          190 LLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPP  232 (305)
T ss_dssp             EEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCT
T ss_pred             EEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCC
Confidence            9999999999977665   799999999999999998765443

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.55  E-value=2.6e-14  Score=132.83  Aligned_cols=112  Identities=11%  Similarity=0.205  Sum_probs=89.3

Q ss_pred             HHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcccccccCc
Q psy11646         26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLESIFLAK  104 (433)
Q Consensus        26 ~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~~~~~~  104 (433)
                      ++.+.++||.+|||+|||+|.++..+.....+.+  +|+|+|+|+.|++.++++. ...++..+.+|...........+.
T Consensus        70 l~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G--~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~  147 (233)
T 4df3_A           70 LIELPVKEGDRILYLGIASGTTASHMSDIIGPRG--RIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEG  147 (233)
T ss_dssp             CSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTC--EEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCC
T ss_pred             hhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCc--eEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccce
Confidence            3456688999999999999999944444334555  9999999999999999988 557899999998764333345588


Q ss_pred             EeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        105 FNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       105 fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +|+|++..  .+..+...++.++++.|||||+++++.
T Consensus       148 vDvVf~d~--~~~~~~~~~l~~~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          148 VDGLYADV--AQPEQAAIVVRNARFFLRDGGYMLMAI  182 (233)
T ss_dssp             EEEEEECC--CCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEEec--cCChhHHHHHHHHHHhccCCCEEEEEE
Confidence            99998754  344577889999999999999999875

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.54  E-value=7.8e-15  Score=148.54  Aligned_cols=119  Identities=15%  Similarity=0.220  Sum_probs=93.4

Q ss_pred             hcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEE----
Q psy11646         13 MQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFV----   88 (433)
Q Consensus        13 ~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~----   88 (433)
                      ........+...+++.+...++.+|||||||+|.++..+ ++   .+ .+++|+|+|+.|++.|+++.    +...    
T Consensus        87 ~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l-~~---~g-~~v~gvD~s~~~~~~a~~~~----~~~~~~~~  157 (416)
T 4e2x_A           87 VMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTI-QE---AG-VRHLGFEPSSGVAAKAREKG----IRVRTDFF  157 (416)
T ss_dssp             HHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHH-HH---TT-CEEEEECCCHHHHHHHHTTT----CCEECSCC
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHH-HH---cC-CcEEEECCCHHHHHHHHHcC----CCcceeee
Confidence            344556777788888888788999999999999999444 43   23 59999999999999999872    2222    


Q ss_pred             -EecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         89 -VANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        89 -~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                       ..+.+..++   .+++||+|++++++||++++..++++++++|||||.+++..+.
T Consensus       158 ~~~~~~~l~~---~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  210 (416)
T 4e2x_A          158 EKATADDVRR---TEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPY  210 (416)
T ss_dssp             SHHHHHHHHH---HHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             chhhHhhccc---CCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence             222222222   2389999999999999999999999999999999999997654

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.54  E-value=4.4e-14  Score=130.09  Aligned_cols=163  Identities=18%  Similarity=0.261  Sum_probs=112.2

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccc
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIF  101 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~  101 (433)
                      ...+++.+. .++.+|||+|||+|.++.. ++..   + .+++|+|+|+.+++.|+++.    .++.++|+.....+ ..
T Consensus        22 ~~~l~~~~~-~~~~~vLdiG~G~G~~~~~-l~~~---~-~~~~~~D~~~~~~~~~~~~~----~~~~~~d~~~~~~~-~~   90 (230)
T 3cc8_A           22 NPNLLKHIK-KEWKEVLDIGCSSGALGAA-IKEN---G-TRVSGIEAFPEAAEQAKEKL----DHVVLGDIETMDMP-YE   90 (230)
T ss_dssp             CHHHHTTCC-TTCSEEEEETCTTSHHHHH-HHTT---T-CEEEEEESSHHHHHHHHTTS----SEEEESCTTTCCCC-SC
T ss_pred             HHHHHHHhc-cCCCcEEEeCCCCCHHHHH-HHhc---C-CeEEEEeCCHHHHHHHHHhC----CcEEEcchhhcCCC-CC
Confidence            344555554 6788999999999999944 4433   2 59999999999999999874    37888998763211 22


Q ss_pred             cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeeccccCceEEE
Q psy11646        102 LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQ  181 (433)
Q Consensus       102 ~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~pl~gv~~iq  181 (433)
                      +++||+|++..+++|++++..+++++.++|+|||.+++..+............  .+.|.......      .      .
T Consensus        91 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------~------~  156 (230)
T 3cc8_A           91 EEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLL--AGNWTYTEYGL------L------D  156 (230)
T ss_dssp             TTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHH--TTCCCCBSSST------T------B
T ss_pred             CCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHh--cCCceeccCCC------C------C
Confidence            37899999999999999999999999999999999999876654432222211  13343211000      0      0


Q ss_pred             ccccccchHHHHHHhcCCCCCeEEEecC
Q psy11646        182 GDITKESTIKEIFSHFDDEKVDLVVFDG  209 (433)
Q Consensus       182 gDi~~~~t~~~il~~~~~~~~dlVvsD~  209 (433)
                      .......+..++...+...++.++-...
T Consensus       157 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  184 (230)
T 3cc8_A          157 KTHIRFFTFNEMLRMFLKAGYSISKVDR  184 (230)
T ss_dssp             TTCCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             cceEEEecHHHHHHHHHHcCCeEEEEEe
Confidence            0111234667777777777887765544

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.54  E-value=3.1e-14  Score=134.88  Aligned_cols=113  Identities=14%  Similarity=0.145  Sum_probs=86.1

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcc--c
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL--E   98 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l--~   98 (433)
                      .+..++..+...++.+|||||||+|.++..++.    .+ .+|+|+|+|+.|++.|+++....   +...++.+...  .
T Consensus        33 ~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~----~g-~~V~gvD~S~~ml~~Ar~~~~~~---~v~~~~~~~~~~~~  104 (261)
T 3iv6_A           33 DRENDIFLENIVPGSTVAVIGASTRFLIEKALE----RG-ASVTVFDFSQRMCDDLAEALADR---CVTIDLLDITAEIP  104 (261)
T ss_dssp             HHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHH----TT-CEEEEEESCHHHHHHHHHHTSSS---CCEEEECCTTSCCC
T ss_pred             HHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHh----cC-CEEEEEECCHHHHHHHHHHHHhc---cceeeeeecccccc
Confidence            445666777778899999999999999954443    23 59999999999999999997322   23344443322  1


Q ss_pred             ccccCcEeEEEEcccccch--hhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         99 SIFLAKFNKIFSFYCLHWV--QDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~--~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ....++||+|+++.++||+  ++...+++++.++| |||.++++..
T Consensus       105 ~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          105 KELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK  149 (261)
T ss_dssp             GGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred             cccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence            1224789999999999986  35678999999999 9999998764

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.54  E-value=4.9e-14  Score=130.93  Aligned_cols=127  Identities=23%  Similarity=0.374  Sum_probs=94.9

Q ss_pred             hhhhhhhhh----hcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhh
Q psy11646          4 ATLYETNNS----MQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH   79 (433)
Q Consensus         4 a~~Y~~~~~----~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~   79 (433)
                      ++.|+....    ..+.....+...+...+  .++.+|||+|||+|.++..++. ..    .+++|+|+|+.|++.|+++
T Consensus         9 a~~yd~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~-~~----~~v~~~D~s~~~~~~a~~~   81 (239)
T 3bxo_A            9 ADVYDLFYLGRGKDYAAEASDIADLVRSRT--PEASSLLDVACGTGTHLEHFTK-EF----GDTAGLELSEDMLTHARKR   81 (239)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHH-HH----SEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHhhccHhhHHHHHHHHHHHHHHhc--CCCCeEEEecccCCHHHHHHHH-hC----CcEEEEeCCHHHHHHHHHh
Confidence            566666432    22223333444333333  5678999999999999954443 32    3899999999999999998


Q ss_pred             cCCCCeEEEEecccCCcccccccCcEeEEEE-cccccch---hhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         80 HTNPKLEFVVANIADQNLESIFLAKFNKIFS-FYCLHWV---QDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        80 ~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis-~~~l~~~---~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      .  .++++.++|+.+.+.    .++||+|++ ..+++|+   ++...++++++++|+|||.+++....
T Consensus        82 ~--~~~~~~~~d~~~~~~----~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  143 (239)
T 3bxo_A           82 L--PDATLHQGDMRDFRL----GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWW  143 (239)
T ss_dssp             C--TTCEEEECCTTTCCC----SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred             C--CCCEEEECCHHHccc----CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence            6  579999999987654    378999995 5589988   56788999999999999999987543

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.54  E-value=1.2e-14  Score=135.95  Aligned_cols=115  Identities=12%  Similarity=0.095  Sum_probs=87.2

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNL   97 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l   97 (433)
                      .+...+.+.+ ..+|.+|||||||+|..+ ..+++..+   .+++|+|+|+.+++.|+++.  ...++.+..+|+... .
T Consensus        48 ~~m~~~a~~~-~~~G~rVLdiG~G~G~~~-~~~~~~~~---~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~-~  121 (236)
T 3orh_A           48 PYMHALAAAA-SSKGGRVLEVGFGMAIAA-SKVQEAPI---DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV-A  121 (236)
T ss_dssp             HHHHHHHHHH-TTTCEEEEEECCTTSHHH-HHHTTSCE---EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH-G
T ss_pred             HHHHHHHHhh-ccCCCeEEEECCCccHHH-HHHHHhCC---cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhh-c
Confidence            3333444333 257899999999999998 55554332   48999999999999999988  345678888887653 2


Q ss_pred             cccccCcEeEEEE-----cccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646         98 ESIFLAKFNKIFS-----FYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        98 ~~~~~~~fD~Vis-----~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      ....+++||.|+.     ...++|..+...++++++|+|||||++++.
T Consensus       122 ~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          122 PTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             GGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence            2234488999974     556678889999999999999999998763

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.54  E-value=7.5e-14  Score=132.11  Aligned_cols=129  Identities=22%  Similarity=0.366  Sum_probs=94.1

Q ss_pred             hhhhhhhhhhcHH-HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC
Q psy11646          4 ATLYETNNSMQQL-DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN   82 (433)
Q Consensus         4 a~~Y~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~   82 (433)
                      +..|++.....+. .....+..++..+. .++.+|||||||+|.++.. +++.   + .+++|+|+|+.|++.|+++.. 
T Consensus        25 a~~Yd~~~~~~~~~~~~~~~~~~l~~~~-~~~~~vLDiGcG~G~~~~~-l~~~---~-~~v~gvD~s~~~l~~a~~~~~-   97 (260)
T 2avn_A           25 ARAYDSMYETPKWKLYHRLIGSFLEEYL-KNPCRVLDLGGGTGKWSLF-LQER---G-FEVVLVDPSKEMLEVAREKGV-   97 (260)
T ss_dssp             HHHHGGGGCSHHHHHHHHHHHHHHHHHC-CSCCEEEEETCTTCHHHHH-HHTT---T-CEEEEEESCHHHHHHHHHHTC-
T ss_pred             HHHHHHhccccchhHHHHHHHHHHHHhc-CCCCeEEEeCCCcCHHHHH-HHHc---C-CeEEEEeCCHHHHHHHHhhcC-
Confidence            4556655432221 12223333443332 2788999999999999944 4432   2 599999999999999999863 


Q ss_pred             CCeEEEEecccCCcccccccCcEeEEEEcccccch-hhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646         83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWV-QDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        83 ~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~-~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                       . .+.++|+...++++   ++||+|++..+++|. +++..+++++.++|||||.+++..++.
T Consensus        98 -~-~~~~~d~~~~~~~~---~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  155 (260)
T 2avn_A           98 -K-NVVEAKAEDLPFPS---GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF  155 (260)
T ss_dssp             -S-CEEECCTTSCCSCT---TCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             -C-CEEECcHHHCCCCC---CCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence             2 28889998766543   889999998866555 789999999999999999999987543

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.54  E-value=2.9e-14  Score=138.30  Aligned_cols=109  Identities=21%  Similarity=0.398  Sum_probs=83.8

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC--CC-------CeEEEEecccCCcc----cc
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT--NP-------KLEFVVANIADQNL----ES   99 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~--~~-------~i~~~~~Di~~~~l----~~   99 (433)
                      ++.+|||||||+|..+..+++    .++.+|+|+|+|+.|++.|++++.  ..       +++|.+.|+.....    +.
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~----~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~  123 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFY----GEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVRE  123 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHH----TTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHT
T ss_pred             CCCeEEEEecCCcHhHHHHHh----cCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhc
Confidence            478999999999986645554    223589999999999999999871  11       26788888844321    11


Q ss_pred             -cccCcEeEEEEcccccch---hhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646        100 -IFLAKFNKIFSFYCLHWV---QDQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus       100 -~~~~~fD~Vis~~~l~~~---~d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                       ...++||+|+|..++|++   ++...++++++++|||||.+++.++...
T Consensus       124 ~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~  173 (302)
T 2vdw_A          124 VFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGD  173 (302)
T ss_dssp             TCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred             cccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence             234799999999999875   4568899999999999999998876543

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.53  E-value=2.5e-14  Score=133.84  Aligned_cols=109  Identities=17%  Similarity=0.243  Sum_probs=89.8

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccc--cCcEeEEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIF--LAKFNKIF  109 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~--~~~fD~Vi  109 (433)
                      .++.+|||||||+|.++. .+++..    .+|+|+|+|+.|++.|+++....++++.++|+.+.+.....  ...||+|+
T Consensus        55 ~~~~~vLD~GcG~G~~~~-~la~~~----~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~  129 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTK-FLSQFF----PRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIY  129 (245)
T ss_dssp             CTTSCEEEETCTTSHHHH-HHHHHS----SCEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEE
T ss_pred             CCCCeEEEEcCCCCHHHH-HHHHhC----CCEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEE
Confidence            578899999999999994 444432    38999999999999999998556899999999875443211  13499999


Q ss_pred             Ecccccchh--hHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646        110 SFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus       110 s~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      +..++||++  +...+++++.++|||||.+++......
T Consensus       130 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  167 (245)
T 3ggd_A          130 MRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTG  167 (245)
T ss_dssp             EESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred             EcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence            999999998  789999999999999999888876543

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.53  E-value=1.3e-14  Score=135.36  Aligned_cols=114  Identities=16%  Similarity=0.182  Sum_probs=85.4

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCC--
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQ--   95 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~--   95 (433)
                      .++..+...+ ..++.+|||||||+|..+. .++..   +..+++|+|+|+.|++.|+++.  ...++++.++|+.+.  
T Consensus        48 ~~~~~l~~~~-~~~~~~vLDiGcGtG~~~~-~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~  122 (236)
T 1zx0_A           48 PYMHALAAAA-SSKGGRVLEVGFGMAIAAS-KVQEA---PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAP  122 (236)
T ss_dssp             HHHHHHHHHH-TTTCEEEEEECCTTSHHHH-HHHTS---CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGG
T ss_pred             HHHHHHHhhc-CCCCCeEEEEeccCCHHHH-HHHhc---CCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhc
Confidence            4444444433 3578899999999999994 44432   2248999999999999999987  336789999998875  


Q ss_pred             cccccccCcEeEEEE-ccccc----chhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         96 NLESIFLAKFNKIFS-FYCLH----WVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        96 ~l~~~~~~~fD~Vis-~~~l~----~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +++   +++||+|++ .+.++    +..+...++++++++|||||++++..
T Consensus       123 ~~~---~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          123 TLP---DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             GSC---TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ccC---CCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence            343   389999999 55431    22345678999999999999988764

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.53  E-value=1.3e-13  Score=129.32  Aligned_cols=116  Identities=23%  Similarity=0.463  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCC
Q psy11646         18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQ   95 (433)
Q Consensus        18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~   95 (433)
                      ....+..++..+..+++.+|||+|||+|..+..++. .   + .+++|+|+|+.|++.|+++.  ...++++.++|+.+.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~-~---~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~  100 (252)
T 1wzn_A           26 EIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAE-R---G-YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEI  100 (252)
T ss_dssp             HHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHH-T---T-CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGC
T ss_pred             HHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHH-C---C-CeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhc
Confidence            345566677766656788999999999999955443 2   3 59999999999999999987  334799999999876


Q ss_pred             cccccccCcEeEEEEccc-ccch--hhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         96 NLESIFLAKFNKIFSFYC-LHWV--QDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        96 ~l~~~~~~~fD~Vis~~~-l~~~--~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      +.+    ++||+|++... +++.  ++...+++++.++|+|||.+++..+
T Consensus       101 ~~~----~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~  146 (252)
T 1wzn_A          101 AFK----NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP  146 (252)
T ss_dssp             CCC----SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccC----CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence            543    68999998643 3433  4678899999999999999988654

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.53  E-value=6.4e-14  Score=127.75  Aligned_cols=107  Identities=20%  Similarity=0.384  Sum_probs=88.3

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcccccccCcEeEEEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLESIFLAKFNKIFS  110 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis  110 (433)
                      .++.+|||+|||+|.++..++. .   +..+++|+|+|+.+++.|+++. ...++++.++|+...++++   ++||+|++
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~-~---~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~---~~fD~v~~  113 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFL-G---GFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPS---ASFDVVLE  113 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHH-T---TCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCS---SCEEEEEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHH-c---CCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCC---CcccEEEE
Confidence            6788999999999999955444 2   2128999999999999999987 3368999999998765443   78999999


Q ss_pred             cccccchh---------------hHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646        111 FYCLHWVQ---------------DQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus       111 ~~~l~~~~---------------d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      ..+++++.               +...+++++.++|+|||.+++..+...
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~  163 (215)
T 2pxx_A          114 KGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP  163 (215)
T ss_dssp             ESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred             CcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence            99886653               668899999999999999999876653

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.53  E-value=7e-14  Score=133.76  Aligned_cols=122  Identities=18%  Similarity=0.287  Sum_probs=94.3

Q ss_pred             HHHHHHHHhcC-CCCCCEEEEECCCC---ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccC
Q psy11646         20 KLLSQYIDQFK-WTDNESVLDVGCGP---GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIAD   94 (433)
Q Consensus        20 ~ll~~l~~~l~-~~~~~~VLDIGcG~---G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~   94 (433)
                      ..+..+++.+. ..+..+|||||||+   |..+ ..+++..+.  .+|+++|+|+.|++.|++++ ...+++++++|+.+
T Consensus        63 ~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~-~~~~~~~p~--~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~  139 (274)
T 2qe6_A           63 KVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTH-EVAQSVNPD--ARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRD  139 (274)
T ss_dssp             HHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHH-HHHHHHCTT--CEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTC
T ss_pred             HHHHHHHHHHhhccCCCEEEEECCCCCCCChHH-HHHHHhCCC--CEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCC
Confidence            34444444443 23457999999999   9887 555555554  49999999999999999987 44689999999976


Q ss_pred             Cccc-------c-cccCcEeEEEEcccccchhh--HHHHHHHHHHhccCCCEEEEEeccC
Q psy11646         95 QNLE-------S-IFLAKFNKIFSFYCLHWVQD--QRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        95 ~~l~-------~-~~~~~fD~Vis~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      ....       . ...++||+|+++.++||+++  ...++++++++|+|||.+++.....
T Consensus       140 ~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          140 PEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             HHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             chhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            3210       1 11258999999999999986  8899999999999999999987654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.53  E-value=2.7e-14  Score=137.26  Aligned_cols=105  Identities=19%  Similarity=0.254  Sum_probs=81.1

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCC-----------------------------
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNP-----------------------------   83 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~-----------------------------   83 (433)
                      ++.+|||||||+|..+ .+++. .+  +.+|+|+|+|+.|++.|++++...                             
T Consensus        71 ~~~~vLDiGcG~G~~~-~l~~~-~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  146 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQ-LLSAC-SH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ  146 (289)
T ss_dssp             CCSEEEEETCTTCCGG-GTTGG-GG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred             CCCeEEEECCCcChHH-HHhhc-cC--CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHH
Confidence            6789999999999954 33332 11  249999999999999998854110                             


Q ss_pred             ----CeEEEEecccC-Ccccc--cccCcEeEEEEcccccc----hhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         84 ----KLEFVVANIAD-QNLES--IFLAKFNKIFSFYCLHW----VQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        84 ----~i~~~~~Di~~-~~l~~--~~~~~fD~Vis~~~l~~----~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                          .+++.++|+.. .++++  ...++||+|+++.+++|    ++++..++++++++|||||.+++..
T Consensus       147 ~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~  215 (289)
T 2g72_A          147 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG  215 (289)
T ss_dssp             HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                14567778877 44332  23467999999999999    7789999999999999999999864

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.53  E-value=7.3e-14  Score=130.10  Aligned_cols=127  Identities=24%  Similarity=0.433  Sum_probs=96.3

Q ss_pred             chhhhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--
Q psy11646          3 KATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--   80 (433)
Q Consensus         3 ~a~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--   80 (433)
                      .|..|+......  .....+..+...+  +++.+|||+|||+|.++. .+++.     .+++|+|+|+.+++.|+++.  
T Consensus         7 ~a~~yd~~~~~~--~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~-~l~~~-----~~v~~vD~s~~~~~~a~~~~~~   76 (243)
T 3d2l_A            7 FAYVYDELMQDV--PYPEWVAWVLEQV--EPGKRIADIGCGTGTATL-LLADH-----YEVTGVDLSEEMLEIAQEKAME   76 (243)
T ss_dssp             TTHHHHHHTTTC--CHHHHHHHHHHHS--CTTCEEEEESCTTCHHHH-HHTTT-----SEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhcc--cHHHHHHHHHHHc--CCCCeEEEecCCCCHHHH-HHhhC-----CeEEEEECCHHHHHHHHHhhhh
Confidence            456676633221  1233444555554  457899999999999984 44432     49999999999999999987  


Q ss_pred             CCCCeEEEEecccCCcccccccCcEeEEEEcc-cccch---hhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         81 TNPKLEFVVANIADQNLESIFLAKFNKIFSFY-CLHWV---QDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        81 ~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~-~l~~~---~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      ...++++.++|+.+.+++    ++||+|++.. +++|+   .+...+++++.++|+|||.+++..+.
T Consensus        77 ~~~~~~~~~~d~~~~~~~----~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  139 (243)
T 3d2l_A           77 TNRHVDFWVQDMRELELP----EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHS  139 (243)
T ss_dssp             TTCCCEEEECCGGGCCCS----SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cCCceEEEEcChhhcCCC----CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence            335799999999876443    7899999986 89988   56788999999999999999986543

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.52  E-value=2.6e-14  Score=131.33  Aligned_cols=112  Identities=23%  Similarity=0.312  Sum_probs=88.4

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc-ccc
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES-IFL  102 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~-~~~  102 (433)
                      .++..+...++.+|||||||+|.++. .++..   + .+++|+|+|+.+++.|+++   .++.+...|+.+..... ...
T Consensus        43 ~~~~~~~~~~~~~vLdiG~G~G~~~~-~l~~~---~-~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~  114 (227)
T 3e8s_A           43 AILLAILGRQPERVLDLGCGEGWLLR-ALADR---G-IEAVGVDGDRTLVDAARAA---GAGEVHLASYAQLAEAKVPVG  114 (227)
T ss_dssp             HHHHHHHHTCCSEEEEETCTTCHHHH-HHHTT---T-CEEEEEESCHHHHHHHHHT---CSSCEEECCHHHHHTTCSCCC
T ss_pred             HHHHHhhcCCCCEEEEeCCCCCHHHH-HHHHC---C-CEEEEEcCCHHHHHHHHHh---cccccchhhHHhhcccccccC
Confidence            34444444567899999999999994 44432   2 5999999999999999998   57788888887641111 223


Q ss_pred             CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646        103 AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      ++||+|++..+++ ..++..++++++++|+|||.+++..+..
T Consensus       115 ~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~  155 (227)
T 3e8s_A          115 KDYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHP  155 (227)
T ss_dssp             CCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence            5699999999999 7889999999999999999999987654

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.52  E-value=5.3e-14  Score=136.88  Aligned_cols=122  Identities=20%  Similarity=0.297  Sum_probs=91.8

Q ss_pred             HHHHHHHHhcCC--CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC----------CCCeEE
Q psy11646         20 KLLSQYIDQFKW--TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----------NPKLEF   87 (433)
Q Consensus        20 ~ll~~l~~~l~~--~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~----------~~~i~~   87 (433)
                      .++..+++.+..  +++.+|||+|||+|.++..++. . +  ..+++|+|+|+.|++.|+++..          ..++++
T Consensus        19 ~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~-~-~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~   94 (313)
T 3bgv_A           19 VLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKK-G-R--INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEF   94 (313)
T ss_dssp             HHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHH-T-T--CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEE
T ss_pred             HHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHh-c-C--CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEE
Confidence            344444444332  3678999999999999855543 2 2  2599999999999999998761          136899


Q ss_pred             EEecccCCcccc-c--ccCcEeEEEEcccccch----hhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646         88 VVANIADQNLES-I--FLAKFNKIFSFYCLHWV----QDQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus        88 ~~~Di~~~~l~~-~--~~~~fD~Vis~~~l~~~----~d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      .++|+...++.+ .  ..++||+|++..++||+    ++...+++++.++|||||.+++..++..
T Consensus        95 ~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~  159 (313)
T 3bgv_A           95 ITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSF  159 (313)
T ss_dssp             EECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHH
T ss_pred             EEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChH
Confidence            999998865211 1  12589999999999998    4467899999999999999999877654

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.52  E-value=8.9e-14  Score=124.38  Aligned_cols=106  Identities=18%  Similarity=0.219  Sum_probs=80.3

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeE
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      .+++.+|||+|||+|.++. .+++.    +.+|+|+|+|+.|++.|+++.   +..++++.+.+....  ....+++||+
T Consensus        20 ~~~~~~vLDiGcG~G~~~~-~la~~----~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l--~~~~~~~fD~   92 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTA-FLAGL----SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENL--DHYVREPIRA   92 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHH-HHHTT----SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGG--GGTCCSCEEE
T ss_pred             CCCCCEEEEEcCCCCHHHH-HHHHh----CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHH--HhhccCCcCE
Confidence            3678999999999999994 44433    259999999999999999987   336899998777653  2222478999


Q ss_pred             EEEcc-cccc--------hhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646        108 IFSFY-CLHW--------VQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       108 Vis~~-~l~~--------~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      |+++. .+++        ..+...+++++.++|||||.+++....
T Consensus        93 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           93 AIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             EEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             EEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence            99873 3332        245667899999999999999987654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.52  E-value=2e-13  Score=122.14  Aligned_cols=116  Identities=20%  Similarity=0.281  Sum_probs=93.4

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCC--eEEEEecccCCc
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPK--LEFVVANIADQN   96 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~--i~~~~~Di~~~~   96 (433)
                      ...+++.+...++.+|||+|||+|.++..++. .    +.+++|+|+++.+++.|+++.   ...+  +++..+|+.+. 
T Consensus        41 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~-~----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-  114 (194)
T 1dus_A           41 TKILVENVVVDKDDDILDLGCGYGVIGIALAD-E----VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN-  114 (194)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGG-G----SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-
T ss_pred             HHHHHHHcccCCCCeEEEeCCCCCHHHHHHHH-c----CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc-
Confidence            34455566667889999999999999954443 3    259999999999999999987   2344  99999998764 


Q ss_pred             ccccccCcEeEEEEcccccc-hhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646         97 LESIFLAKFNKIFSFYCLHW-VQDQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus        97 l~~~~~~~fD~Vis~~~l~~-~~d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      .+   .++||+|+++.++++ ..+...+++++.++|+|||.+++.......
T Consensus       115 ~~---~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  162 (194)
T 1dus_A          115 VK---DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQG  162 (194)
T ss_dssp             CT---TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHH
T ss_pred             cc---cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence            33   378999999999887 467789999999999999999998766543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.52  E-value=6.8e-14  Score=133.08  Aligned_cols=125  Identities=15%  Similarity=0.211  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHH------HHHHHHhhc-C---CCCeE
Q psy11646         17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPN------MIKHAKNHH-T---NPKLE   86 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~------~l~~A~~~~-~---~~~i~   86 (433)
                      ........+++.+..+++.+|||||||+|.++..++....+.  .+++|+|+|+.      +++.|++++ .   ..+++
T Consensus        27 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~--~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~  104 (275)
T 3bkx_A           27 RQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSS--GHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLT  104 (275)
T ss_dssp             HHHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTT--CEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEE
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEECCccccccHHHHHHHHHHHHhcCCCCceE
Confidence            344555667777777889999999999999995444332233  39999999997      999999887 2   15799


Q ss_pred             EEEec-ccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646         87 FVVAN-IADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        87 ~~~~D-i~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      +.++| +....++ ..+++||+|++..+++|+++...+++.+.++++|||.+++.....
T Consensus       105 ~~~~d~~~~~~~~-~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~  162 (275)
T 3bkx_A          105 VHFNTNLSDDLGP-IADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSM  162 (275)
T ss_dssp             EECSCCTTTCCGG-GTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred             EEECChhhhccCC-CCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            99998 3222221 234889999999999999998887788888888899999987543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.52  E-value=1.5e-13  Score=131.70  Aligned_cols=104  Identities=12%  Similarity=0.185  Sum_probs=85.9

Q ss_pred             HhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccC
Q psy11646         27 DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLA  103 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~  103 (433)
                      ..+..+++.+|||||||+|.++...+++. +.  .+|+|+|+|+.|++.|++++   +..++++.++|+.+.  +.   +
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~-~g--a~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l--~d---~  187 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHV-YG--MRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVI--DG---L  187 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHT-TC--CEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGG--GG---C
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHc-cC--CEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhC--CC---C
Confidence            45567899999999999998874455432 32  59999999999999999986   337899999999874  33   8


Q ss_pred             cEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        104 KFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       104 ~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +||+|++...   .++...+++++.++|||||++++..
T Consensus       188 ~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          188 EFDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRT  222 (298)
T ss_dssp             CCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEc
Confidence            8999998655   4688899999999999999999865

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.51  E-value=8.4e-14  Score=123.31  Aligned_cols=122  Identities=15%  Similarity=0.161  Sum_probs=90.5

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCC-CeEEEEecccCCcc
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNP-KLEFVVANIADQNL   97 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~-~i~~~~~Di~~~~l   97 (433)
                      ...++..+...++.+|||+|||+|.++. .++...+.  .+++|+|+|+.+++.|+++.   +.. ++ ++..|... .+
T Consensus        14 ~~~~~~~~~~~~~~~vldiG~G~G~~~~-~l~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~-~~   88 (178)
T 3hm2_A           14 RALAISALAPKPHETLWDIGGGSGSIAI-EWLRSTPQ--TTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR-AF   88 (178)
T ss_dssp             HHHHHHHHCCCTTEEEEEESTTTTHHHH-HHHTTSSS--EEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG-GG
T ss_pred             HHHHHHHhcccCCCeEEEeCCCCCHHHH-HHHHHCCC--CeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh-hh
Confidence            3445566666788999999999999994 44444433  59999999999999999986   223 67 77888754 23


Q ss_pred             cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHh
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEK  153 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~  153 (433)
                      +. ..++||+|++..++++    ..+++++.++|+|||.+++..............
T Consensus        89 ~~-~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~  139 (178)
T 3hm2_A           89 DD-VPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTVESEQMLWAL  139 (178)
T ss_dssp             GG-CCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHH
T ss_pred             hc-cCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHH
Confidence            32 2278999999999987    678999999999999999887655444333333

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.51  E-value=5.9e-14  Score=132.45  Aligned_cols=108  Identities=19%  Similarity=0.293  Sum_probs=86.3

Q ss_pred             CCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCC-------------------------
Q psy11646         30 KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPK-------------------------   84 (433)
Q Consensus        30 ~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~-------------------------   84 (433)
                      ...++.+|||||||+|.++ ..++..   +..+|+|+|+|+.|++.|+++.....                         
T Consensus        53 ~~~~~~~vLDlGcG~G~~~-~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQ-LLSACE---SFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEK  128 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGG-GTTGGG---TEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHH
T ss_pred             cccCCCEEEEECCCccHHH-HHHhhc---ccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHH
Confidence            3356789999999999998 444432   21389999999999999998873222                         


Q ss_pred             -------e-EEEEecccCCcc-cccccCcEeEEEEccccc----chhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         85 -------L-EFVVANIADQNL-ESIFLAKFNKIFSFYCLH----WVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        85 -------i-~~~~~Di~~~~l-~~~~~~~fD~Vis~~~l~----~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                             + ++.++|+.+... +....++||+|++..++|    +.++...+++++.++|||||.+++..
T Consensus       129 ~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  198 (265)
T 2i62_A          129 EEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD  198 (265)
T ss_dssp             HHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence                   7 899999987532 222237899999999999    77788999999999999999999876

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.51  E-value=4.1e-14  Score=129.99  Aligned_cols=108  Identities=15%  Similarity=0.145  Sum_probs=77.5

Q ss_pred             cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcccccccCcEeE
Q psy11646         29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      +..+++.+|||+|||+|..+ ..++...+.  .+|+|+|+|+.|++.+.+.. ...++.++++|+..........++||+
T Consensus        53 ~~~~~g~~VLDlGcGtG~~~-~~la~~~~~--~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~  129 (210)
T 1nt2_A           53 LKLRGDERVLYLGAASGTTV-SHLADIVDE--GIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDL  129 (210)
T ss_dssp             CCCCSSCEEEEETCTTSHHH-HHHHHHTTT--SEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEE
T ss_pred             cCCCCCCEEEEECCcCCHHH-HHHHHHcCC--CEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeE
Confidence            45568899999999999998 555555553  49999999998765544433 225788888888763110111278999


Q ss_pred             EEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |++... ++ .+...++++++++|||||.+++..
T Consensus       130 V~~~~~-~~-~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          130 IYQDIA-QK-NQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             EEECCC-ST-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEecc-Ch-hHHHHHHHHHHHHhCCCCEEEEEE
Confidence            999732 22 334456899999999999999874

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.50  E-value=5.6e-13  Score=132.85  Aligned_cols=116  Identities=16%  Similarity=0.259  Sum_probs=95.3

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccC
Q psy11646         19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIAD   94 (433)
Q Consensus        19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~   94 (433)
                      ......+++.+.+.++.+|||||||+|.++. .+++..+..  +++++|+ +.+++.|++++    ...++++..+|+. 
T Consensus       188 ~~~~~~l~~~~~~~~~~~vlDvG~G~G~~~~-~l~~~~p~~--~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-  262 (369)
T 3gwz_A          188 LTEAGQVAAAYDFSGAATAVDIGGGRGSLMA-AVLDAFPGL--RGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-  262 (369)
T ss_dssp             HHHHHHHHHHSCCTTCSEEEEETCTTSHHHH-HHHHHCTTC--EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-
T ss_pred             hhhHHHHHHhCCCccCcEEEEeCCCccHHHH-HHHHHCCCC--eEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-
Confidence            3445677777777788999999999999994 445555544  8999999 99999999876    2368999999997 


Q ss_pred             CcccccccCcEeEEEEcccccchhhHH--HHHHHHHHhccCCCEEEEEecc
Q psy11646         95 QNLESIFLAKFNKIFSFYCLHWVQDQR--QAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        95 ~~l~~~~~~~fD~Vis~~~l~~~~d~~--~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      .+.+    ..||+|++.+++|++++..  .+++++++.|+|||++++.+..
T Consensus       263 ~~~p----~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~  309 (369)
T 3gwz_A          263 ETIP----DGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNL  309 (369)
T ss_dssp             TCCC----SSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEB
T ss_pred             CCCC----CCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            3344    3799999999999998765  7999999999999999998654

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.49  E-value=1.3e-13  Score=132.09  Aligned_cols=102  Identities=22%  Similarity=0.303  Sum_probs=85.4

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      .++.+|||+|||+|.++..++. .   + .+|+|+|+|+.+++.|+++.  ...++++.++|+...+.    .++||+|+
T Consensus       119 ~~~~~vLD~GcG~G~~~~~l~~-~---g-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~i~  189 (286)
T 3m70_A          119 ISPCKVLDLGCGQGRNSLYLSL-L---G-YDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI----QENYDFIV  189 (286)
T ss_dssp             SCSCEEEEESCTTCHHHHHHHH-T---T-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC----CSCEEEEE
T ss_pred             cCCCcEEEECCCCCHHHHHHHH-C---C-CeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc----cCCccEEE
Confidence            4788999999999999954443 2   3 59999999999999999987  22389999999987654    38999999


Q ss_pred             Ecccccchh--hHHHHHHHHHHhccCCCEEEEEec
Q psy11646        110 SFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       110 s~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ++.++||++  +...+++++.++|+|||.+++...
T Consensus       190 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (286)
T 3m70_A          190 STVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA  224 (286)
T ss_dssp             ECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            999999984  466899999999999999877653

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.49  E-value=1.6e-13  Score=124.42  Aligned_cols=113  Identities=23%  Similarity=0.298  Sum_probs=88.3

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccc
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLES   99 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~   99 (433)
                      +..++..+  +++ +|||||||+|..+. .++..   + .+++|+|+|+.+++.|+++.  ...++.+.++|+...+++.
T Consensus        21 l~~~~~~~--~~~-~vLdiGcG~G~~~~-~l~~~---~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~   92 (202)
T 2kw5_A           21 LVSVANQI--PQG-KILCLAEGEGRNAC-FLASL---G-YEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVA   92 (202)
T ss_dssp             HHHHHHHS--CSS-EEEECCCSCTHHHH-HHHTT---T-CEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCT
T ss_pred             HHHHHHhC--CCC-CEEEECCCCCHhHH-HHHhC---C-CeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCc
Confidence            44445444  456 99999999999994 44432   3 59999999999999999987  2237899999998765443


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                         ++||+|++.....+..+...+++++.++|+|||.+++......
T Consensus        93 ---~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  135 (202)
T 2kw5_A           93 ---DAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPE  135 (202)
T ss_dssp             ---TTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred             ---CCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence               7899999975444446788999999999999999999876544

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.49  E-value=7.4e-14  Score=129.06  Aligned_cols=108  Identities=14%  Similarity=0.206  Sum_probs=84.1

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccc-cccCcEeEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLES-IFLAKFNKI  108 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~-~~~~~fD~V  108 (433)
                      ++.+|||||||+|.++ ..++...+..  .|+|+|+|+.+++.|+++.   +..++.++++|+.+. ++. ..+++||.|
T Consensus        34 ~~~~vLDiGcG~G~~~-~~lA~~~p~~--~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~-l~~~~~~~~~d~v  109 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASL-VAMAKDRPEQ--DFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEV-LHKMIPDNSLRMV  109 (218)
T ss_dssp             CCCEEEEESCTTCHHH-HHHHHHCTTS--EEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHH-HHHHSCTTCEEEE
T ss_pred             CCCeEEEEeeeChHHH-HHHHHHCCCC--eEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHH-HHHHcCCCChheE
Confidence            5679999999999999 5555555544  8999999999999999886   446899999998763 221 234899999


Q ss_pred             EEcccccchhhH--------HHHHHHHHHhccCCCEEEEEeccC
Q psy11646        109 FSFYCLHWVQDQ--------RQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       109 is~~~l~~~~d~--------~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      +++++..|....        ..+++++.++|||||.+++.....
T Consensus       110 ~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~  153 (218)
T 3dxy_A          110 QLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWE  153 (218)
T ss_dssp             EEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred             EEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCH
Confidence            998665544321        258999999999999999876433

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.49  E-value=1.1e-13  Score=128.88  Aligned_cols=129  Identities=19%  Similarity=0.215  Sum_probs=89.5

Q ss_pred             hhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCe
Q psy11646          7 YETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKL   85 (433)
Q Consensus         7 Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i   85 (433)
                      |+..++.+...+..++..+ +.+.++++.+|||+|||+|..+..+.....+.+  +|+|+|+|+.|++...+.. ...++
T Consensus        51 yr~w~~~~skla~~ll~~l-~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G--~V~avD~s~~~l~~l~~~a~~r~nv  127 (232)
T 3id6_C           51 YREWNAFRSKLAGAILKGL-KTNPIRKGTKVLYLGAASGTTISHVSDIIELNG--KAYGVEFSPRVVRELLLVAQRRPNI  127 (232)
T ss_dssp             EEECCTTTCHHHHHHHTTC-SCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTS--EEEEEECCHHHHHHHHHHHHHCTTE
T ss_pred             hhhhchHHHHHHHHHHhhh-hhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCC--EEEEEECcHHHHHHHHHHhhhcCCe
Confidence            6666777776666655443 445578999999999999999944433333444  9999999998864332222 12689


Q ss_pred             EEEEecccCCcccccccCcEeEEEEcccccchhhHHH-HHHHHHHhccCCCEEEEEe
Q psy11646         86 EFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQ-AISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        86 ~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~-~l~~i~~~LkpGG~lll~~  141 (433)
                      .++++|+..........++||+|++..+.   ++... +..++.+.|||||++++..
T Consensus       128 ~~i~~Da~~~~~~~~~~~~~D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisi  181 (232)
T 3id6_C          128 FPLLADARFPQSYKSVVENVDVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVI  181 (232)
T ss_dssp             EEEECCTTCGGGTTTTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcccccchhhhccccceEEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEE
Confidence            99999987642212224789999998664   34444 4556677999999999874

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.48  E-value=3.2e-13  Score=123.34  Aligned_cols=119  Identities=13%  Similarity=0.143  Sum_probs=91.5

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCC-CeEEEEecccCCcccc
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNP-KLEFVVANIADQNLES   99 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~-~i~~~~~Di~~~~l~~   99 (433)
                      .++..+...++.+|||+|||+|.++..++. .    +.+|+|+|+|+.+++.|+++.   +.. ++++.++|+.+.... 
T Consensus        46 ~~l~~l~~~~~~~vLDlGcG~G~~~~~la~-~----~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~-  119 (204)
T 3njr_A           46 LTLAALAPRRGELLWDIGGGSGSVSVEWCL-A----GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD-  119 (204)
T ss_dssp             HHHHHHCCCTTCEEEEETCTTCHHHHHHHH-T----TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT-
T ss_pred             HHHHhcCCCCCCEEEEecCCCCHHHHHHHH-c----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc-
Confidence            345566667899999999999999954443 3    259999999999999999986   334 799999998763111 


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhh
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLS  155 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~  155 (433)
                        ...||+|++...+    +.. +++++.++|||||++++..............+.
T Consensus       120 --~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~  168 (204)
T 3njr_A          120 --LPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHA  168 (204)
T ss_dssp             --SCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHH
T ss_pred             --CCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHH
Confidence              1579999998755    455 999999999999999998776555545444443

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.48  E-value=2.6e-13  Score=121.15  Aligned_cols=145  Identities=17%  Similarity=0.220  Sum_probs=102.4

Q ss_pred             CCchhhhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc
Q psy11646          1 MHKATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH   80 (433)
Q Consensus         1 m~~a~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~   80 (433)
                      |-..+.|.+.....+.....+...++..+...++.+|||+|||+|..+..++. ..    .+++|+|+|+.+++.|++++
T Consensus         1 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~-~~----~~v~~~D~~~~~~~~a~~~~   75 (192)
T 1l3i_A            1 MIPDDEFIKNPSVPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAG-RV----RRVYAIDRNPEAISTTEMNL   75 (192)
T ss_dssp             CCCGGGSCCCTTSCCCCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHT-TS----SEEEEEESCHHHHHHHHHHH
T ss_pred             CCChHHhhcCCCCCCCChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHH-hc----CEEEEEECCHHHHHHHHHHH
Confidence            44555565544222122233444455556667899999999999999954443 22    49999999999999999976


Q ss_pred             ---CC-CCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhc
Q psy11646         81 ---TN-PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSR  156 (433)
Q Consensus        81 ---~~-~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~  156 (433)
                         .. .++++.++|+.. .++.  .++||+|++..++++   ...+++++.++|+|||.+++..............+..
T Consensus        76 ~~~~~~~~~~~~~~d~~~-~~~~--~~~~D~v~~~~~~~~---~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~  149 (192)
T 1l3i_A           76 QRHGLGDNVTLMEGDAPE-ALCK--IPDIDIAVVGGSGGE---LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRD  149 (192)
T ss_dssp             HHTTCCTTEEEEESCHHH-HHTT--SCCEEEEEESCCTTC---HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHH
T ss_pred             HHcCCCcceEEEecCHHH-hccc--CCCCCEEEECCchHH---HHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHH
Confidence               22 588999998765 2221  147999999988765   4788999999999999999987665544444444443

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.48  E-value=1.3e-13  Score=133.26  Aligned_cols=116  Identities=17%  Similarity=0.268  Sum_probs=90.5

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC------CCeEEEEeccc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN------PKLEFVVANIA   93 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~------~~i~~~~~Di~   93 (433)
                      ..+..+++.+... +.+|||||||+|.++..++. .   + .+|+|+|+|+.|++.|+++...      .++++.++|+.
T Consensus        70 ~~~~~~~~~~~~~-~~~vLDlGcG~G~~~~~l~~-~---~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~  143 (299)
T 3g2m_A           70 SEAREFATRTGPV-SGPVLELAAGMGRLTFPFLD-L---G-WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS  143 (299)
T ss_dssp             HHHHHHHHHHCCC-CSCEEEETCTTTTTHHHHHT-T---T-CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT
T ss_pred             HHHHHHHHhhCCC-CCcEEEEeccCCHHHHHHHH-c---C-CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchh
Confidence            3344555555433 44999999999999944443 2   2 5899999999999999998722      57999999999


Q ss_pred             CCcccccccCcEeEEEEc-ccccchh--hHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646         94 DQNLESIFLAKFNKIFSF-YCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus        94 ~~~l~~~~~~~fD~Vis~-~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      +.++    .++||+|++. .++++++  +...++++++++|||||.+++..+...
T Consensus       144 ~~~~----~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  194 (299)
T 3g2m_A          144 AFAL----DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE  194 (299)
T ss_dssp             BCCC----SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred             cCCc----CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence            8654    2899998864 6677775  468899999999999999999876544

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.48  E-value=2.3e-13  Score=133.57  Aligned_cols=114  Identities=21%  Similarity=0.221  Sum_probs=92.3

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcc
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNL   97 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l   97 (433)
                      ...+++.+.+.++.+|||||||+|.++. .+++..|..  +++++|+ +.+++.|+++.    ...++++..+|+. .+.
T Consensus       158 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~-~l~~~~p~~--~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~  232 (332)
T 3i53_A          158 YTGIAAKYDWAALGHVVDVGGGSGGLLS-ALLTAHEDL--SGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPL  232 (332)
T ss_dssp             HTTGGGSSCCGGGSEEEEETCTTSHHHH-HHHHHCTTC--EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCC
T ss_pred             HHHHHHhCCCCCCCEEEEeCCChhHHHH-HHHHHCCCC--eEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCC
Confidence            4445566666667899999999999994 445555544  8999999 99999999876    2368999999997 334


Q ss_pred             cccccCcEeEEEEcccccchhhH--HHHHHHHHHhccCCCEEEEEeccC
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQDQ--RQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d~--~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      +    .+||+|++.+++|++++.  ..++++++++|+|||++++.+...
T Consensus       233 p----~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  277 (332)
T 3i53_A          233 P----AGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVA  277 (332)
T ss_dssp             C----CSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCC
T ss_pred             C----CCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecC
Confidence            4    379999999999999774  789999999999999999987543

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.48  E-value=2.2e-13  Score=133.53  Aligned_cols=117  Identities=14%  Similarity=0.189  Sum_probs=93.8

Q ss_pred             HHHHHHHHhcCC--CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEeccc
Q psy11646         20 KLLSQYIDQFKW--TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIA   93 (433)
Q Consensus        20 ~ll~~l~~~l~~--~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~   93 (433)
                      .....+++.+.+  .++.+|||||||+|..+. .+++..+.  .+++++|++ .+++.|+++.   + ..++++..+|+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~-~l~~~~p~--~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~  225 (335)
T 2r3s_A          150 NPAQLIAQLVNENKIEPLKVLDISASHGLFGI-AVAQHNPN--AEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAF  225 (335)
T ss_dssp             HHHHHHHHHHTC--CCCSEEEEETCTTCHHHH-HHHHHCTT--CEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTT
T ss_pred             hhHHHHHHhcccccCCCCEEEEECCCcCHHHH-HHHHHCCC--CeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccc
Confidence            344556666666  778899999999999994 44445554  499999999 9999999886   2 246999999998


Q ss_pred             CCcccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646         94 DQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        94 ~~~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      +.+++    +.||+|++.+++|+++  +...++++++++|+|||++++.+...
T Consensus       226 ~~~~~----~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  274 (335)
T 2r3s_A          226 EVDYG----NDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIP  274 (335)
T ss_dssp             TSCCC----SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             cCCCC----CCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence            75444    4599999999999984  45789999999999999999887543

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.48  E-value=4.2e-13  Score=120.06  Aligned_cols=102  Identities=25%  Similarity=0.481  Sum_probs=85.5

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSF  111 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~  111 (433)
                      +++.+|||+|||+|.++..++. .   + .+++|+|+|+.+++.|+++.  .++++.++|+...+++.   ++||+|++.
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~-~---~-~~v~~~D~~~~~~~~a~~~~--~~~~~~~~d~~~~~~~~---~~~D~i~~~  114 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSK-Q---G-HDVLGTDLDPILIDYAKQDF--PEARWVVGDLSVDQISE---TDFDLIVSA  114 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHH-T---T-CEEEEEESCHHHHHHHHHHC--TTSEEEECCTTTSCCCC---CCEEEEEEC
T ss_pred             cCCCeEEEECCCCCHHHHHHHH-C---C-CcEEEEcCCHHHHHHHHHhC--CCCcEEEcccccCCCCC---CceeEEEEC
Confidence            5788999999999999954443 2   2 59999999999999999987  56899999998765543   789999998


Q ss_pred             -ccccch--hhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646        112 -YCLHWV--QDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       112 -~~l~~~--~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                       .+++++  ++...+++++.++|+|||.+++....
T Consensus       115 ~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~  149 (195)
T 3cgg_A          115 GNVMGFLAEDGREPALANIHRALGADGRAVIGFGA  149 (195)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             CcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence             678877  45688999999999999999987643

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.47  E-value=3e-13  Score=123.39  Aligned_cols=110  Identities=15%  Similarity=0.166  Sum_probs=89.4

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQN   96 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~   96 (433)
                      .....+++.+...++.+|||+|||+|..+. .+++.   + .+++++|+|+.+++.|++++   +..++++..+|+....
T Consensus        64 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~-~la~~---~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  138 (210)
T 3lbf_A           64 YMVARMTELLELTPQSRVLEIGTGSGYQTA-ILAHL---V-QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW  138 (210)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHH-HHHHH---S-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCCCHHHH-HHHHh---C-CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCC
Confidence            344556666677889999999999999994 44443   2 59999999999999999987   3457999999987754


Q ss_pred             ccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         97 LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        97 l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      ..   .++||+|++..+++++.+      ++.++|+|||++++....
T Consensus       139 ~~---~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          139 QA---RAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             GG---GCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred             cc---CCCccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence            33   378999999999998875      578999999999998754

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.47  E-value=9.2e-13  Score=116.74  Aligned_cols=124  Identities=15%  Similarity=0.241  Sum_probs=96.7

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQN   96 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~   96 (433)
                      .+...++..+...++.+|||+|||+|.++..+ +.  +  ..+++|+|+|+.+++.|+++.   +..++++.++|+.+ +
T Consensus        22 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l-~~--~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~   95 (183)
T 2yxd_A           22 EIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEI-AK--R--CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-V   95 (183)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEESCCCSHHHHHH-HT--T--SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-H
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHH-Hh--c--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-c
Confidence            34445555566678899999999999999444 43  2  259999999999999999987   33579999999876 4


Q ss_pred             ccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCC
Q psy11646         97 LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKP  158 (433)
Q Consensus        97 l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~  158 (433)
                      +++   ++||+|++..+    .+...+++++.++  |||.+++..............+...+
T Consensus        96 ~~~---~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g  148 (183)
T 2yxd_A           96 LDK---LEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRG  148 (183)
T ss_dssp             GGG---CCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             ccC---CCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcC
Confidence            444   78999999988    5678889999988  99999998876666666666665544

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.47  E-value=3.1e-13  Score=124.78  Aligned_cols=137  Identities=12%  Similarity=0.143  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecc
Q psy11646         17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANI   92 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di   92 (433)
                      ....++..++..   .++.+|||||||+|..+. .++...+.+ .+|+++|+++.+++.|++++   + ..+++++++|+
T Consensus        45 ~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~-~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  119 (221)
T 3u81_A           45 AKGQIMDAVIRE---YSPSLVLELGAYCGYSAV-RMARLLQPG-ARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGAS  119 (221)
T ss_dssp             HHHHHHHHHHHH---HCCSEEEEECCTTSHHHH-HHHTTSCTT-CEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             HHHHHHHHHHHh---cCCCEEEEECCCCCHHHH-HHHHhCCCC-CEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCH
Confidence            344555555544   357899999999999994 455444433 59999999999999999987   2 24699999998


Q ss_pred             cCCcccccc----cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCc
Q psy11646         93 ADQNLESIF----LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKW  160 (433)
Q Consensus        93 ~~~~l~~~~----~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W  160 (433)
                      .+. ++...    .++||+|++....++..+....+..+ ++|||||.+++..............+...+.|
T Consensus       120 ~~~-l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~  189 (221)
T 3u81_A          120 QDL-IPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGSSSF  189 (221)
T ss_dssp             HHH-GGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHCTTE
T ss_pred             HHH-HHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhCCCc
Confidence            552 22211    26899999998888777666778777 99999999988765544444444444444433

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.46  E-value=2.1e-13  Score=121.83  Aligned_cols=112  Identities=14%  Similarity=0.247  Sum_probs=83.6

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNL   97 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l   97 (433)
                      .+-..+...+  .+..+|||+|||+|.++ ..+....|.  .+|+++|+|+.|++.+++++  .....++...|.... .
T Consensus        38 ~fY~~~~~~l--~~~~~VLDlGCG~GplA-l~l~~~~p~--a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~  111 (200)
T 3fzg_A           38 DFYTYVFGNI--KHVSSILDFGCGFNPLA-LYQWNENEK--IIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-V  111 (200)
T ss_dssp             HHHHHHHHHS--CCCSEEEEETCTTHHHH-HHHHCSSCC--CEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-H
T ss_pred             HHHHHHHhhc--CCCCeEEEecCCCCHHH-HHHHhcCCC--CEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-C
Confidence            3334444444  56789999999999999 444444444  39999999999999999998  222223444665443 2


Q ss_pred             cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                         ..++||+|+++.++|++++.+.++.++.+.|+|||.++-.
T Consensus       112 ---~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISf  151 (200)
T 3fzg_A          112 ---YKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISF  151 (200)
T ss_dssp             ---TTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEE
T ss_pred             ---CCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEe
Confidence               2388999999999999988888888999999999976654

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.46  E-value=3.1e-13  Score=122.05  Aligned_cols=109  Identities=17%  Similarity=0.269  Sum_probs=84.7

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCcccccccCcEe
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNLESIFLAKFN  106 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l~~~~~~~fD  106 (433)
                      .+++.+|||+|||+|..+..++....+.+  +++|+|+|+.+++.|++++   + ..++++.++|+...+  ....++||
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~fD   95 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENG--RVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMD--KYIDCPVK   95 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTC--EEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGG--GTCCSCEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHh--hhccCCce
Confidence            36789999999999999955444332333  9999999999999999987   2 258999999987643  22337899


Q ss_pred             EEEEcccc---------cchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646        107 KIFSFYCL---------HWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       107 ~Vis~~~l---------~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      +|+++.++         +...+...+++++.++|||||.+++....
T Consensus        96 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A           96 AVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             EEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence            99998765         12234567999999999999999987643

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.45  E-value=3e-13  Score=134.48  Aligned_cols=122  Identities=16%  Similarity=0.227  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----------C--CCC
Q psy11646         17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----------T--NPK   84 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----------~--~~~   84 (433)
                      .....+..++..+...++.+|||||||+|..+..++ ...+.  .+++|+|+|+.+++.|+++.          +  ..+
T Consensus       157 t~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA-~~~g~--~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~r  233 (438)
T 3uwp_A          157 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVA-AATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE  233 (438)
T ss_dssp             THHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHH-HHCCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCE
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHH-HHCCC--CEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            344666777888888899999999999999995444 33332  37999999999999998642          1  268


Q ss_pred             eEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         85 LEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        85 i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      ++|+++|+.+.++... -..||+|+++..++ .++....+.++++.|||||++++....
T Consensus       234 Vefi~GD~~~lp~~d~-~~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvLKPGGrIVssE~f  290 (438)
T 3uwp_A          234 YTLERGDFLSEEWRER-IANTSVIFVNNFAF-GPEVDHQLKERFANMKEGGRIVSSKPF  290 (438)
T ss_dssp             EEEEECCTTSHHHHHH-HHTCSEEEECCTTC-CHHHHHHHHHHHTTSCTTCEEEESSCS
T ss_pred             eEEEECcccCCccccc-cCCccEEEEccccc-CchHHHHHHHHHHcCCCCcEEEEeecc
Confidence            9999999988655321 14699999988775 468888999999999999999987543

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.45  E-value=8.6e-13  Score=125.16  Aligned_cols=87  Identities=14%  Similarity=0.143  Sum_probs=64.5

Q ss_pred             HhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC-------CCeEEEEecccCCccc-
Q psy11646         27 DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN-------PKLEFVVANIADQNLE-   98 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~-------~~i~~~~~Di~~~~l~-   98 (433)
                      ..+...++.+|||+|||+|.++ ..++...+.  .+++|+|+++.+++.|++++..       .+++++++|+.+.... 
T Consensus        30 ~~~~~~~~~~VLDlG~G~G~~~-l~la~~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~  106 (260)
T 2ozv_A           30 SLVADDRACRIADLGAGAGAAG-MAVAARLEK--AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKAR  106 (260)
T ss_dssp             HTCCCCSCEEEEECCSSSSHHH-HHHHHHCTT--EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHH
T ss_pred             HHhcccCCCEEEEeCChHhHHH-HHHHHhCCC--CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhh
Confidence            3344567889999999999999 455555543  4999999999999999998732       2589999999875110 


Q ss_pred             ---ccccCcEeEEEEcccccc
Q psy11646         99 ---SIFLAKFNKIFSFYCLHW  116 (433)
Q Consensus        99 ---~~~~~~fD~Vis~~~l~~  116 (433)
                         ....++||+|+++..+..
T Consensus       107 ~~~~~~~~~fD~Vv~nPPy~~  127 (260)
T 2ozv_A          107 VEAGLPDEHFHHVIMNPPYND  127 (260)
T ss_dssp             HHTTCCTTCEEEEEECCCC--
T ss_pred             hhhccCCCCcCEEEECCCCcC
Confidence               122478999999977654

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.45  E-value=3.6e-13  Score=125.17  Aligned_cols=107  Identities=12%  Similarity=0.193  Sum_probs=82.3

Q ss_pred             HHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcccccccCc
Q psy11646         26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLESIFLAK  104 (433)
Q Consensus        26 ~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~~~~~~  104 (433)
                      ++.+...++.+|||+|||+|..+ ..++...+.  .+|+|+|+|+.|++.|+++. ...++.++.+|+..........++
T Consensus        67 l~~~~~~~~~~VLDlGcG~G~~~-~~la~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (230)
T 1fbn_A           67 LKVMPIKRDSKILYLGASAGTTP-SHVADIADK--GIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEK  143 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCSSHHH-HHHHHHTTT--SEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCC
T ss_pred             ccccCCCCCCEEEEEcccCCHHH-HHHHHHcCC--cEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCcc
Confidence            55555678899999999999999 555555443  49999999999999999987 347899999998762110011168


Q ss_pred             EeEEEEcccccchhhH---HHHHHHHHHhccCCCEEEEE
Q psy11646        105 FNKIFSFYCLHWVQDQ---RQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       105 fD~Vis~~~l~~~~d~---~~~l~~i~~~LkpGG~lll~  140 (433)
                      ||+|+     |++.++   ..+++++.++|+|||.+++.
T Consensus       144 ~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          144 VDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            99999     333444   77799999999999999986

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.45  E-value=5.1e-14  Score=128.27  Aligned_cols=127  Identities=18%  Similarity=0.177  Sum_probs=79.0

Q ss_pred             cHHHHHHHHHHHHHhcCC-CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC--CCeEEEEe
Q psy11646         14 QQLDAAKLLSQYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN--PKLEFVVA   90 (433)
Q Consensus        14 ~~~~~~~ll~~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~--~~i~~~~~   90 (433)
                      -++....+++.+++.+.. .++.+|||+|||+|.++. .++...+.  .+++|+|+|+.+++.|++++..  .++++.++
T Consensus        10 p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~-~l~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~   86 (215)
T 4dzr_A           10 PRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAV-SIALACPG--VSVTAVDLSMDALAVARRNAERFGAVVDWAAA   86 (215)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHH-HHHHHCTT--EEEEEEECC-------------------CCHH
T ss_pred             CCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHH-HHHHhCCC--CeEEEEECCHHHHHHHHHHHHHhCCceEEEEc
Confidence            345667777788887766 678899999999999994 44444443  4999999999999999998721  16788888


Q ss_pred             cccCCcccc--cccCcEeEEEEcccccchhhH--------------------------HHHHHHHHHhccCCCEEEEEec
Q psy11646         91 NIADQNLES--IFLAKFNKIFSFYCLHWVQDQ--------------------------RQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        91 Di~~~~l~~--~~~~~fD~Vis~~~l~~~~d~--------------------------~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      |+.+ +++.  ...++||+|+++.++++..+.                          ..+++++.++|||||.+++...
T Consensus        87 d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  165 (215)
T 4dzr_A           87 DGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV  165 (215)
T ss_dssp             HHHH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred             chHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            8866 2321  123789999998776544321                          6788999999999999544444


Q ss_pred             cC
Q psy11646        143 AF  144 (433)
Q Consensus       143 ~~  144 (433)
                      ..
T Consensus       166 ~~  167 (215)
T 4dzr_A          166 GH  167 (215)
T ss_dssp             TT
T ss_pred             CC
Confidence            33

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.45  E-value=1e-13  Score=126.34  Aligned_cols=106  Identities=19%  Similarity=0.151  Sum_probs=82.8

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC--CCeEEEEecccCCcccccccCc-Ee
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN--PKLEFVVANIADQNLESIFLAK-FN  106 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~--~~i~~~~~Di~~~~l~~~~~~~-fD  106 (433)
                      ++.+|||+|||+|.++..+++.    +..+|+|+|+|+.|++.|++++   +.  .++++.++|+.+.. +....++ ||
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~fD  127 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSR----QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL-KQPQNQPHFD  127 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT----TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT-TSCCSSCCEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHc----cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHH-HhhccCCCCC
Confidence            6789999999999998555542    2248999999999999999987   22  58999999987642 1112368 99


Q ss_pred             EEEEcccccchhhHHHHHHHH--HHhccCCCEEEEEeccC
Q psy11646        107 KIFSFYCLHWVQDQRQAISNI--YNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       107 ~Vis~~~l~~~~d~~~~l~~i--~~~LkpGG~lll~~~~~  144 (433)
                      +|++..+++ ..+...+++.+  .++|+|||.+++.....
T Consensus       128 ~I~~~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          128 VVFLDPPFH-FNLAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             EEEECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             EEEECCCCC-CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            999998865 55677888888  67899999999876543

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.45  E-value=5.2e-14  Score=129.39  Aligned_cols=107  Identities=19%  Similarity=0.249  Sum_probs=79.4

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHH----Hhhc---CCCCeEEEEecccCCcccccccC
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHA----KNHH---TNPKLEFVVANIADQNLESIFLA  103 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A----~~~~---~~~~i~~~~~Di~~~~l~~~~~~  103 (433)
                      ..++.+|||||||+|.++ ..++...+.  .+|+|+|+|+.|++.+    +++.   ...++++.++|+.+.+++... +
T Consensus        25 ~~~~~~vLDiGcG~G~~~-~~la~~~p~--~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d  100 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHP-YKVARQNPS--RLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-G  100 (218)
T ss_dssp             TTSSEEEEEESCTTCHHH-HHHHHHCTT--EEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-E
T ss_pred             ccCCCEEEEecCCCCHHH-HHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-C
Confidence            467889999999999999 455555544  4999999999988853    3322   335899999999987655422 3


Q ss_pred             cEeEEEEccccc--chhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        104 KFNKIFSFYCLH--WVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       104 ~fD~Vis~~~l~--~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .+++++++..++  |++++..++++++++|||||.+++..
T Consensus       101 ~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A          101 ELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL  140 (218)
T ss_dssp             EEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence            344344444443  77778999999999999999999854

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.45  E-value=1.3e-12  Score=123.68  Aligned_cols=107  Identities=16%  Similarity=0.205  Sum_probs=76.2

Q ss_pred             cCCC-CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccC
Q psy11646         29 FKWT-DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLA  103 (433)
Q Consensus        29 l~~~-~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~  103 (433)
                      +..+ ++.+|||+|||+|.++. .++...+   .+++|+|+++.+++.|++++    ...++++.++|+.+.. .....+
T Consensus        44 ~~~~~~~~~vLDlG~G~G~~~~-~la~~~~---~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~-~~~~~~  118 (259)
T 3lpm_A           44 SYLPIRKGKIIDLCSGNGIIPL-LLSTRTK---AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKIT-DLIPKE  118 (259)
T ss_dssp             CCCCSSCCEEEETTCTTTHHHH-HHHTTCC---CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGG-GTSCTT
T ss_pred             hcCCCCCCEEEEcCCchhHHHH-HHHHhcC---CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhh-hhhccC
Confidence            3456 78999999999999994 4444322   38999999999999999987    2246999999998753 112248


Q ss_pred             cEeEEEEcccccch--------------------hhHHHHHHHHHHhccCCCEEEEE
Q psy11646        104 KFNKIFSFYCLHWV--------------------QDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       104 ~fD~Vis~~~l~~~--------------------~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +||+|+++.+++..                    .+...+++.+.++|+|||.+++.
T Consensus       119 ~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~  175 (259)
T 3lpm_A          119 RADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV  175 (259)
T ss_dssp             CEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE
Confidence            99999998776543                    12345566666666666666653

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.44  E-value=1.1e-12  Score=131.11  Aligned_cols=128  Identities=20%  Similarity=0.240  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHhcC--CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEec
Q psy11646         16 LDAAKLLSQYIDQFK--WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVAN   91 (433)
Q Consensus        16 ~~~~~ll~~l~~~l~--~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~D   91 (433)
                      ...+.+++.+...+.  ..++.+|||+|||+|.++..++. .   + .+|+|+|+|+.+++.|++++  ...++++.++|
T Consensus       214 ~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~-~---g-~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D  288 (381)
T 3dmg_A          214 PASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLAR-M---G-AEVVGVEDDLASVLSLQKGLEANALKAQALHSD  288 (381)
T ss_dssp             HHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHH-T---T-CEEEEEESBHHHHHHHHHHHHHTTCCCEEEECS
T ss_pred             HHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHH-c---C-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcc
Confidence            344556666655542  23678999999999999955544 2   2 59999999999999999987  33358999999


Q ss_pred             ccCCcccccccCcEeEEEEcccccc-----hhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHH
Q psy11646         92 IADQNLESIFLAKFNKIFSFYCLHW-----VQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLY  151 (433)
Q Consensus        92 i~~~~l~~~~~~~fD~Vis~~~l~~-----~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~  151 (433)
                      +.+...+   .++||+|+++.++|+     ..+...+++++.++|+|||.++++.....+....+
T Consensus       289 ~~~~~~~---~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l  350 (381)
T 3dmg_A          289 VDEALTE---EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLL  350 (381)
T ss_dssp             TTTTSCT---TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHH
T ss_pred             hhhcccc---CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHH
Confidence            9876443   378999999999998     56778899999999999999999876554443333

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.44  E-value=7.1e-13  Score=121.63  Aligned_cols=106  Identities=15%  Similarity=0.345  Sum_probs=84.1

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKI  108 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~V  108 (433)
                      .++.+|||||||+|.++ ..++...+.  .+++|+|+|+.+++.|+++.   +..+++++++|+...+ .....++||+|
T Consensus        40 ~~~~~vLDiGcG~G~~~-~~la~~~p~--~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~D~i  115 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFV-SGMAKQNPD--INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT-DYFEDGEIDRL  115 (214)
T ss_dssp             SCCCEEEEESCTTSHHH-HHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGG-GTSCTTCCSEE
T ss_pred             CCCCeEEEEccCcCHHH-HHHHHHCCC--CCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHH-hhcCCCCCCEE
Confidence            45789999999999999 455555554  49999999999999999987   3468999999998743 01223789999


Q ss_pred             EEcccccchh--------hHHHHHHHHHHhccCCCEEEEEe
Q psy11646        109 FSFYCLHWVQ--------DQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       109 is~~~l~~~~--------d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +++....|..        ....+++++.++|+|||.+++..
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  156 (214)
T 1yzh_A          116 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  156 (214)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence            9998765543        13679999999999999998865

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.44  E-value=2.4e-13  Score=120.61  Aligned_cols=126  Identities=11%  Similarity=0.127  Sum_probs=88.5

Q ss_pred             hcHHHHHHHHHHHHHhcC-CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CC---CCeEE
Q psy11646         13 MQQLDAAKLLSQYIDQFK-WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TN---PKLEF   87 (433)
Q Consensus        13 ~~~~~~~~ll~~l~~~l~-~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~---~~i~~   87 (433)
                      ..++....+.+.+.+.+. ..++.+|||+|||+|.++..++. . +  ..+++|+|+|+.+++.|++++ ..   .++++
T Consensus        10 ~~rp~~~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~-~-~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~   85 (177)
T 2esr_A           10 ITRPTSDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVS-R-G--MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTL   85 (177)
T ss_dssp             --------CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHH-T-T--CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEE
T ss_pred             CCCcCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHH-c-C--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEE
Confidence            344555556666666665 45788999999999999855544 2 2  249999999999999999987 21   46899


Q ss_pred             EEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHH--HhccCCCEEEEEeccCC
Q psy11646         88 VVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIY--NLLMPGGEVLLLLNAFN  145 (433)
Q Consensus        88 ~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~--~~LkpGG~lll~~~~~~  145 (433)
                      ..+|+.+. ++ ...++||+|++..+++. ......++.+.  ++|+|||.+++......
T Consensus        86 ~~~d~~~~-~~-~~~~~fD~i~~~~~~~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A           86 LKMEAERA-ID-CLTGRFDLVFLDPPYAK-ETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             ECSCHHHH-HH-HBCSCEEEEEECCSSHH-HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             EECcHHHh-HH-hhcCCCCEEEECCCCCc-chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            99998762 11 22367999999887643 44566677776  99999999999765543

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.44  E-value=6.8e-13  Score=141.11  Aligned_cols=119  Identities=13%  Similarity=0.261  Sum_probs=92.7

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---------CCCCeEEEEe
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---------TNPKLEFVVA   90 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---------~~~~i~~~~~   90 (433)
                      ..++.+++.+...++.+|||||||+|.++ ..+++..+.. .+|+|+|+|+.|++.|++++         ...++++.++
T Consensus       708 qRle~LLelL~~~~g~rVLDVGCGTG~la-i~LAr~g~p~-a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqG  785 (950)
T 3htx_A          708 QRVEYALKHIRESSASTLVDFGCGSGSLL-DSLLDYPTSL-QTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDG  785 (950)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEETCSSSHHH-HHHTSSCCCC-CEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEES
T ss_pred             HHHHHHHHHhcccCCCEEEEECCCCCHHH-HHHHHhCCCC-CeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEEC
Confidence            33444444444457889999999999999 5555544222 49999999999999998843         2357999999


Q ss_pred             cccCCcccccccCcEeEEEEcccccchhhHH--HHHHHHHHhccCCCEEEEEeccC
Q psy11646         91 NIADQNLESIFLAKFNKIFSFYCLHWVQDQR--QAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        91 Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~--~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      |+...+...   ++||+|++..+++|+++..  .+++++.++|||| .+++..+..
T Consensus       786 Da~dLp~~d---~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~  837 (950)
T 3htx_A          786 SILEFDSRL---HDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY  837 (950)
T ss_dssp             CTTSCCTTS---CSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred             chHhCCccc---CCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence            999876554   8899999999999998755  5899999999999 777776543

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.43  E-value=7.8e-13  Score=131.18  Aligned_cols=115  Identities=15%  Similarity=0.304  Sum_probs=93.8

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCC
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQ   95 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~   95 (433)
                      .....+++.+.+.++.+|||||||+|.++ ..+++..+.  .+++++|+ +.+++.|++++   . ..++++..+|+.+.
T Consensus       177 ~~~~~l~~~~~~~~~~~vLDvG~G~G~~~-~~l~~~~p~--~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  252 (359)
T 1x19_A          177 FAIQLLLEEAKLDGVKKMIDVGGGIGDIS-AAMLKHFPE--LDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE  252 (359)
T ss_dssp             HHHHHHHHHCCCTTCCEEEEESCTTCHHH-HHHHHHCTT--CEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS
T ss_pred             hhHHHHHHhcCCCCCCEEEEECCcccHHH-HHHHHHCCC--CeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC
Confidence            44556677777778899999999999999 455555554  49999999 99999999876   2 24699999999876


Q ss_pred             cccccccCcEeEEEEcccccchhh--HHHHHHHHHHhccCCCEEEEEecc
Q psy11646         96 NLESIFLAKFNKIFSFYCLHWVQD--QRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        96 ~l~~~~~~~fD~Vis~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      +++     .+|+|++..++|++++  ...++++++++|+|||++++.+..
T Consensus       253 ~~~-----~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~  297 (359)
T 1x19_A          253 SYP-----EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV  297 (359)
T ss_dssp             CCC-----CCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEC
T ss_pred             CCC-----CCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            544     2399999999999876  788999999999999999887644

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.43  E-value=1.2e-12  Score=119.80  Aligned_cols=112  Identities=15%  Similarity=0.237  Sum_probs=87.0

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcc
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNL   97 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l   97 (433)
                      +...+++.+...++.+|||||||+|..+..+ ++..+.. .+++++|+|+.+++.|++++   ...++++..+|+... +
T Consensus        65 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l-~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~  141 (215)
T 2yxe_A           65 MVGMMCELLDLKPGMKVLEIGTGCGYHAAVT-AEIVGED-GLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLG-Y  141 (215)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHH-HHHHCTT-SEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGC-C
T ss_pred             HHHHHHHhhCCCCCCEEEEECCCccHHHHHH-HHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC-C
Confidence            3445566666678999999999999999544 4443221 49999999999999999886   345799999998543 2


Q ss_pred             cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      +  ..++||+|++..+++++.      .++.++|||||.+++....
T Consensus       142 ~--~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          142 E--PLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             G--GGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESS
T ss_pred             C--CCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEECC
Confidence            2  137899999999999886      3789999999999988643

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.43  E-value=8.9e-13  Score=119.89  Aligned_cols=120  Identities=13%  Similarity=0.129  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEeccc
Q psy11646         17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIA   93 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~   93 (433)
                      ....++..+...+  +++.+|||+|||+|.++.. +++. +.  .+++|+|+|+.+++.|+++.   ...++++.++|+.
T Consensus        46 ~~~~~~~~l~~~~--~~~~~vLDiG~G~G~~~~~-l~~~-~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~  119 (205)
T 3grz_A           46 TTQLAMLGIERAM--VKPLTVADVGTGSGILAIA-AHKL-GA--KSVLATDISDESMTAAEENAALNGIYDIALQKTSLL  119 (205)
T ss_dssp             HHHHHHHHHHHHC--SSCCEEEEETCTTSHHHHH-HHHT-TC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTT
T ss_pred             cHHHHHHHHHHhc--cCCCEEEEECCCCCHHHHH-HHHC-CC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccc
Confidence            3344444444333  5788999999999999854 4432 22  49999999999999999987   3334999999987


Q ss_pred             CCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhH
Q psy11646         94 DQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDL  150 (433)
Q Consensus        94 ~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~  150 (433)
                      ..  .   .++||+|+++.+++++   ..+++++.++|+|||.+++...........
T Consensus       120 ~~--~---~~~fD~i~~~~~~~~~---~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~  168 (205)
T 3grz_A          120 AD--V---DGKFDLIVANILAEIL---LDLIPQLDSHLNEDGQVIFSGIDYLQLPKI  168 (205)
T ss_dssp             TT--C---CSCEEEEEEESCHHHH---HHHGGGSGGGEEEEEEEEEEEEEGGGHHHH
T ss_pred             cc--C---CCCceEEEECCcHHHH---HHHHHHHHHhcCCCCEEEEEecCcccHHHH
Confidence            63  2   2789999999888764   678999999999999999976554443333

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.43  E-value=7.3e-13  Score=123.80  Aligned_cols=108  Identities=17%  Similarity=0.337  Sum_probs=80.4

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---------CCCCeEEEEecccCCcccc-cc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---------TNPKLEFVVANIADQNLES-IF  101 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---------~~~~i~~~~~Di~~~~l~~-~~  101 (433)
                      .++.+|||||||+|.++ ..++...+..  .++|+|+|+.|++.|++++         ...++.++++|+... ++. +.
T Consensus        45 ~~~~~vLDiGcG~G~~~-~~la~~~p~~--~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~-l~~~~~  120 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLL-VELSPLFPDT--LILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH-LPNFFY  120 (235)
T ss_dssp             -CCEEEEEETCTTCHHH-HHHGGGSTTS--EEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC-HHHHCC
T ss_pred             CCCCeEEEEccCCcHHH-HHHHHHCCCC--eEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh-hhhhCC
Confidence            45678999999999999 5556555544  8999999999999988653         236899999999762 221 23


Q ss_pred             cCcEeEEEEcccccchhh--------HHHHHHHHHHhccCCCEEEEEecc
Q psy11646        102 LAKFNKIFSFYCLHWVQD--------QRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       102 ~~~fD~Vis~~~l~~~~d--------~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      .++||.|+++..-.|...        ...+++++.++|||||.+++....
T Consensus       121 ~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~  170 (235)
T 3ckk_A          121 KGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV  170 (235)
T ss_dssp             TTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             CcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence            489999998776544321        146899999999999999987643

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.42  E-value=5.3e-13  Score=122.72  Aligned_cols=106  Identities=12%  Similarity=0.291  Sum_probs=82.8

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKI  108 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~V  108 (433)
                      .++.+|||||||+|.++ ..+++..+.  .+++|+|+|+.+++.|+++.   +..+++++++|+...+ .....++||.|
T Consensus        37 ~~~~~vLDiGcG~G~~~-~~la~~~p~--~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~-~~~~~~~~d~v  112 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFI-SGMAKQNPD--INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT-DVFEPGEVKRV  112 (213)
T ss_dssp             SCCCEEEEECCTTSHHH-HHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH-HHCCTTSCCEE
T ss_pred             CCCceEEEEecCCCHHH-HHHHHHCCC--CCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHH-hhcCcCCcCEE
Confidence            35789999999999999 455555554  49999999999999999886   3468999999998732 11234789999


Q ss_pred             EEcccccchhh--------HHHHHHHHHHhccCCCEEEEEe
Q psy11646        109 FSFYCLHWVQD--------QRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       109 is~~~l~~~~d--------~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +++....|...        ...+++++.++|+|||.+++..
T Consensus       113 ~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t  153 (213)
T 2fca_A          113 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  153 (213)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             EEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence            98776544321        3678999999999999999875

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.42  E-value=1.2e-12  Score=121.16  Aligned_cols=111  Identities=17%  Similarity=0.264  Sum_probs=87.8

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC-CCCeEEEEecccCCccc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT-NPKLEFVVANIADQNLE   98 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~-~~~i~~~~~Di~~~~l~   98 (433)
                      .++..+++.+...++.+|||||||+|..+. .++...    .+++|+|+|+.+++.|+++.. ..++++..+|+......
T Consensus        57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~-~l~~~~----~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~  131 (231)
T 1vbf_A           57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTA-LIAEIV----DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEE  131 (231)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHH-HHHHHS----SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGG
T ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCCCHHHH-HHHHHc----CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCccccccc
Confidence            445556666667789999999999999994 444332    499999999999999999872 22899999998763222


Q ss_pred             ccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                         .++||+|++..+++++.+      ++.++|+|||.+++.....
T Consensus       132 ---~~~fD~v~~~~~~~~~~~------~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          132 ---EKPYDRVVVWATAPTLLC------KPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             ---GCCEEEEEESSBBSSCCH------HHHHTEEEEEEEEEEECSS
T ss_pred             ---CCCccEEEECCcHHHHHH------HHHHHcCCCcEEEEEEcCC
Confidence               378999999999998753      6889999999999986543

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.42  E-value=8.8e-13  Score=129.35  Aligned_cols=113  Identities=15%  Similarity=0.250  Sum_probs=91.6

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCc
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQN   96 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~   96 (433)
                      ....+++.+.+.+ .+|||||||+|..+. .+++..+.  .+++++|+ +.+++.|+++.    ...++++..+|+.+ +
T Consensus       156 ~~~~~~~~~~~~~-~~vlDvG~G~G~~~~-~l~~~~p~--~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~  229 (334)
T 2ip2_A          156 AFHEIPRLLDFRG-RSFVDVGGGSGELTK-AILQAEPS--ARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-E  229 (334)
T ss_dssp             HHHHHHHHSCCTT-CEEEEETCTTCHHHH-HHHHHCTT--CEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-C
T ss_pred             HHHHHHHhCCCCC-CEEEEeCCCchHHHH-HHHHHCCC--CEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-C
Confidence            3455666666666 899999999999994 44445554  49999999 99999999886    13679999999876 3


Q ss_pred             ccccccCcEeEEEEcccccchhhHH--HHHHHHHHhccCCCEEEEEecc
Q psy11646         97 LESIFLAKFNKIFSFYCLHWVQDQR--QAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        97 l~~~~~~~fD~Vis~~~l~~~~d~~--~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      ++    ++||+|++..++|++++..  .++++++++|+|||++++.+..
T Consensus       230 ~~----~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  274 (334)
T 2ip2_A          230 VP----SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERT  274 (334)
T ss_dssp             CC----SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             CC----CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            33    5799999999999886654  8999999999999999998654

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.41  E-value=1.2e-12  Score=121.15  Aligned_cols=108  Identities=19%  Similarity=0.231  Sum_probs=82.3

Q ss_pred             CCCCCEEEEECCC-CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeE
Q psy11646         31 WTDNESVLDVGCG-PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        31 ~~~~~~VLDIGcG-~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      .+++.+|||+||| +|.++..++. ..   ..+|+|+|+|+.+++.|+++.  ...++++.++|+...  .....++||+
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~-~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~--~~~~~~~fD~  126 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEK-FF---NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGII--KGVVEGTFDV  126 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHH-HH---CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSS--TTTCCSCEEE
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHH-hc---CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhh--hhcccCceeE
Confidence            4678999999999 9999954443 32   259999999999999999987  223799999997532  1122388999


Q ss_pred             EEEcccccchhh-------------------HHHHHHHHHHhccCCCEEEEEeccC
Q psy11646        108 IFSFYCLHWVQD-------------------QRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       108 Vis~~~l~~~~d-------------------~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      |+++.++++..+                   ...+++++.++|||||.+++..+..
T Consensus       127 I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  182 (230)
T 3evz_A          127 IFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK  182 (230)
T ss_dssp             EEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC
T ss_pred             EEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence            999988765433                   4778999999999999999876443

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.41  E-value=8.5e-13  Score=131.63  Aligned_cols=111  Identities=21%  Similarity=0.367  Sum_probs=90.5

Q ss_pred             HHHHHHHHHhcC-CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcc
Q psy11646         19 AKLLSQYIDQFK-WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL   97 (433)
Q Consensus        19 ~~ll~~l~~~l~-~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l   97 (433)
                      ......+++.+. +.++.+|||||||+|.++ ..+++..+..  +++++|+ +.+++.|++.   +++++..+|+.+ ++
T Consensus       194 ~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~-~~l~~~~~~~--~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~  265 (372)
T 1fp1_D          194 ATEMKRMLEIYTGFEGISTLVDVGGGSGRNL-ELIISKYPLI--KGINFDL-PQVIENAPPL---SGIEHVGGDMFA-SV  265 (372)
T ss_dssp             HHHHHHHHHHCCTTTTCSEEEEETCTTSHHH-HHHHHHCTTC--EEEEEEC-HHHHTTCCCC---TTEEEEECCTTT-CC
T ss_pred             HHHHHHHHHHhhccCCCCEEEEeCCCCcHHH-HHHHHHCCCC--eEEEeCh-HHHHHhhhhc---CCCEEEeCCccc-CC
Confidence            334556666665 567889999999999999 4555555543  8999999 9999888763   579999999976 44


Q ss_pred             cccccCcEeEEEEcccccchhhHH--HHHHHHHHhccCCCEEEEEec
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQDQR--QAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d~~--~~l~~i~~~LkpGG~lll~~~  142 (433)
                      +    . ||+|++..++|++++..  .++++++++|+|||++++.+.
T Consensus       266 ~----~-~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~  307 (372)
T 1fp1_D          266 P----Q-GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEF  307 (372)
T ss_dssp             C----C-EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             C----C-CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            3    3 99999999999998876  899999999999999999864

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.41  E-value=6.9e-13  Score=132.09  Aligned_cols=111  Identities=18%  Similarity=0.319  Sum_probs=90.4

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCccc
Q psy11646         23 SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNLE   98 (433)
Q Consensus        23 ~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l~   98 (433)
                      ..+++.+.+.++.+|||||||+|.++. .++...+.  .+++++|+ +.+++.|+++.   + ..++++..+|+.+ +++
T Consensus       172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~-~l~~~~~~--~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~  246 (374)
T 1qzz_A          172 EAPADAYDWSAVRHVLDVGGGNGGMLA-AIALRAPH--LRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP  246 (374)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHH-HHHHHCTT--CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS
T ss_pred             HHHHHhCCCCCCCEEEEECCCcCHHHH-HHHHHCCC--CEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCC
Confidence            445666666788999999999999994 44445554  49999999 99999999886   2 2479999999875 344


Q ss_pred             ccccCcEeEEEEcccccchhhH--HHHHHHHHHhccCCCEEEEEec
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQDQ--RQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~d~--~~~l~~i~~~LkpGG~lll~~~  142 (433)
                          ..||+|++.+++|++++.  ..++++++++|+|||++++.+.
T Consensus       247 ----~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          247 ----VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             ----CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ----CCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence                349999999999998775  4899999999999999998775

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.41  E-value=5.7e-13  Score=124.59  Aligned_cols=102  Identities=12%  Similarity=0.095  Sum_probs=81.0

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKI  108 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~V  108 (433)
                      .++.+|||||||+|..+. .++...+.  .+|+|+|+|+.|++.|+++.   +..+++++++|+.+.+......++||+|
T Consensus        69 ~~~~~vLDiG~G~G~~~~-~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V  145 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSL-PIKICFPH--LHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIV  145 (240)
T ss_dssp             GGCCEEEEECSSSCTTHH-HHHHHCTT--CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             CCCCEEEEecCCCCHHHH-HHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEE
Confidence            467899999999999984 44433343  49999999999999999876   3457999999987754321123789999


Q ss_pred             EEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        109 FSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       109 is~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      ++..+    .+...+++++.++|+|||.+++.
T Consensus       146 ~~~~~----~~~~~~l~~~~~~LkpgG~l~~~  173 (240)
T 1xdz_A          146 TARAV----ARLSVLSELCLPLVKKNGLFVAL  173 (240)
T ss_dssp             EEECC----SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEecc----CCHHHHHHHHHHhcCCCCEEEEE
Confidence            99773    56788999999999999999875

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.41  E-value=9.3e-13  Score=125.84  Aligned_cols=120  Identities=21%  Similarity=0.280  Sum_probs=93.9

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEe
Q psy11646         14 QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVA   90 (433)
Q Consensus        14 ~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~   90 (433)
                      .++..+.+++.+++.+. .++.+|||+|||+|..+. .++...+.  .+++|+|+|+.+++.|+++.   +..++++.++
T Consensus        91 pr~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~-~la~~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~  166 (276)
T 2b3t_A           91 PRPDTECLVEQALARLP-EQPCRILDLGTGTGAIAL-ALASERPD--CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQS  166 (276)
T ss_dssp             CCTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHH-HHHHHCTT--SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECC
T ss_pred             cCchHHHHHHHHHHhcc-cCCCEEEEecCCccHHHH-HHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEc
Confidence            34567778888888776 567899999999999994 44444444  49999999999999999987   3357999999


Q ss_pred             cccCCcccccccCcEeEEEEcccccch-------------------------hhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         91 NIADQNLESIFLAKFNKIFSFYCLHWV-------------------------QDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        91 Di~~~~l~~~~~~~fD~Vis~~~l~~~-------------------------~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |+... ++   .++||+|+++.+++..                         ......++++.++|+|||.+++..
T Consensus       167 d~~~~-~~---~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~  238 (276)
T 2b3t_A          167 DWFSA-LA---GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH  238 (276)
T ss_dssp             STTGG-GT---TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             chhhh-cc---cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            98763 32   3789999998655432                         345778999999999999998864

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.41  E-value=1.6e-12  Score=126.91  Aligned_cols=112  Identities=19%  Similarity=0.268  Sum_probs=89.2

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQN   96 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~   96 (433)
                      ..+..+++.+..+++.+|||||||+|.++. .+++..+.. .+|+|+|+|+.+++.|++++   +..++++.++|+.+..
T Consensus        62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~-~la~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~  139 (317)
T 1dl5_A           62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAA-VMSRVVGEK-GLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV  139 (317)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHH-HHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCCchHHHH-HHHHhcCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcc
Confidence            445566677777889999999999999994 444444422 38999999999999999986   3356999999987743


Q ss_pred             ccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         97 LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        97 l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ...   ++||+|++..+++++.      +++.++|||||.+++...
T Consensus       140 ~~~---~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          140 PEF---SPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             GGG---CCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBC
T ss_pred             ccC---CCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEEC
Confidence            332   7899999999999886      467899999999998753

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.41  E-value=8.6e-13  Score=122.14  Aligned_cols=121  Identities=16%  Similarity=0.251  Sum_probs=92.0

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC--CCeEEE
Q psy11646         14 QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN--PKLEFV   88 (433)
Q Consensus        14 ~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~--~~i~~~   88 (433)
                      ..+....++..++...+.+++.+|||||||+|..+. .++..++.+ .+++++|+++.+++.|++++   +.  .+++++
T Consensus        37 i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~-~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~  114 (221)
T 3dr5_A           37 PDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGL-YILNGLADN-TTLTCIDPESEHQRQAKALFREAGYSPSRVRFL  114 (221)
T ss_dssp             CCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHH-HHHHHSCTT-SEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred             CCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHH-HHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEE
Confidence            345666777777777655556699999999999994 445444433 59999999999999999987   22  479999


Q ss_pred             EecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646         89 VANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        89 ~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      ++|+.+. ++....++||+|++....   .+....++++.++|||||.+++.
T Consensus       115 ~gda~~~-l~~~~~~~fD~V~~d~~~---~~~~~~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          115 LSRPLDV-MSRLANDSYQLVFGQVSP---MDLKALVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             CSCHHHH-GGGSCTTCEEEEEECCCT---TTHHHHHHHHHHHEEEEEEEEET
T ss_pred             EcCHHHH-HHHhcCCCcCeEEEcCcH---HHHHHHHHHHHHHcCCCcEEEEe
Confidence            9998653 222224789999987543   34567899999999999998874

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.41  E-value=1.2e-12  Score=129.29  Aligned_cols=115  Identities=21%  Similarity=0.339  Sum_probs=92.3

Q ss_pred             HHHHHhcCCCC-CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcc
Q psy11646         23 SQYIDQFKWTD-NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNL   97 (433)
Q Consensus        23 ~~l~~~l~~~~-~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l   97 (433)
                      ..+++.+.+.+ +.+|||||||+|.++ ..+++..|.  .+++++|+ +.+++.|+++.    ...++++..+|+.+.+.
T Consensus       168 ~~~l~~~~~~~~~~~vlDvG~G~G~~~-~~l~~~~p~--~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  243 (352)
T 3mcz_A          168 VDVVSELGVFARARTVIDLAGGHGTYL-AQVLRRHPQ--LTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARN  243 (352)
T ss_dssp             HHHHHTCGGGTTCCEEEEETCTTCHHH-HHHHHHCTT--CEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG
T ss_pred             HHHHHhCCCcCCCCEEEEeCCCcCHHH-HHHHHhCCC--CeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcc
Confidence            35666776666 889999999999999 455555555  49999999 88999999876    12479999999987541


Q ss_pred             cccccCcEeEEEEcccccchhhH--HHHHHHHHHhccCCCEEEEEecc
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQDQ--RQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d~--~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                        ...+.||+|++..++|++++.  ..++++++++|+|||++++.+..
T Consensus       244 --~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  289 (352)
T 3mcz_A          244 --FEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMT  289 (352)
T ss_dssp             --GTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             --cCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence              122679999999999998764  78999999999999999998643

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.40  E-value=3e-12  Score=121.39  Aligned_cols=102  Identities=27%  Similarity=0.463  Sum_probs=82.9

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSF  111 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~  111 (433)
                      .++.+|||||||+|.++. .+++..+.  .+++|+|+|+.+++.|+++.  .++.+.++|+...++++   ++||+|++.
T Consensus        84 ~~~~~vLdiG~G~G~~~~-~l~~~~~~--~~v~~vD~s~~~~~~a~~~~--~~~~~~~~d~~~~~~~~---~~fD~v~~~  155 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTH-AFADALPE--ITTFGLDVSKVAIKAAAKRY--PQVTFCVASSHRLPFSD---TSMDAIIRI  155 (269)
T ss_dssp             TTCCEEEEETCTTSTTHH-HHHHTCTT--SEEEEEESCHHHHHHHHHHC--TTSEEEECCTTSCSBCT---TCEEEEEEE
T ss_pred             CCCCEEEEECCCCCHHHH-HHHHhCCC--CeEEEEeCCHHHHHHHHHhC--CCcEEEEcchhhCCCCC---CceeEEEEe
Confidence            568899999999999994 44444332  49999999999999999986  67899999998766544   789999997


Q ss_pred             ccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchh
Q psy11646        112 YCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIY  148 (433)
Q Consensus       112 ~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~  148 (433)
                      .+..       .++++.++|||||.+++..+......
T Consensus       156 ~~~~-------~l~~~~~~L~pgG~l~~~~~~~~~~~  185 (269)
T 1p91_A          156 YAPC-------KAEELARVVKPGGWVITATPGPRHLM  185 (269)
T ss_dssp             SCCC-------CHHHHHHHEEEEEEEEEEEECTTTTH
T ss_pred             CChh-------hHHHHHHhcCCCcEEEEEEcCHHHHH
Confidence            7643       47899999999999999887665443

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.40  E-value=1.9e-12  Score=127.58  Aligned_cols=109  Identities=21%  Similarity=0.314  Sum_probs=86.4

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCcc
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNL   97 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l   97 (433)
                      ...+.+.+...++.+|||||||+|.++. .+++.   +..+|+|+|+|+ |++.|+++.   + ..+++++++|+.+.++
T Consensus        53 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~-~la~~---g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  127 (340)
T 2fyt_A           53 RDFIYQNPHIFKDKVVLDVGCGTGILSM-FAAKA---GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL  127 (340)
T ss_dssp             HHHHHHCGGGTTTCEEEEETCTTSHHHH-HHHHT---TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC
T ss_pred             HHHHHhhhhhcCCCEEEEeeccCcHHHH-HHHHc---CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC
Confidence            3445555555678999999999999984 44433   224999999997 999999876   2 2689999999988665


Q ss_pred             cccccCcEeEEEEcc---cccchhhHHHHHHHHHHhccCCCEEE
Q psy11646         98 ESIFLAKFNKIFSFY---CLHWVQDQRQAISNIYNLLMPGGEVL  138 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~---~l~~~~d~~~~l~~i~~~LkpGG~ll  138 (433)
                      +.   ++||+|++..   .+++..+...++.++.++|||||.++
T Consensus       128 ~~---~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          128 PV---EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             SC---SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             CC---CcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            53   7899999876   45666678889999999999999987

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.39  E-value=2.2e-12  Score=119.34  Aligned_cols=111  Identities=17%  Similarity=0.228  Sum_probs=82.0

Q ss_pred             HHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcccccccCc
Q psy11646         26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLESIFLAK  104 (433)
Q Consensus        26 ~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~~~~~~  104 (433)
                      ++.+...++.+|||+|||+|.++. .+++..+.. .+++|+|+|+.|++.++++. ...++++.++|+..........++
T Consensus        66 l~~~~~~~~~~vLDlG~G~G~~~~-~la~~~~~~-~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (227)
T 1g8a_A           66 LKNFPIKPGKSVLYLGIASGTTAS-HVSDIVGWE-GKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPK  143 (227)
T ss_dssp             CCCCCCCTTCEEEEETTTSTTHHH-HHHHHHCTT-SEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCC
T ss_pred             HHhcCCCCCCEEEEEeccCCHHHH-HHHHHhCCC-eEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCC
Confidence            344446788999999999999994 444443222 39999999999999998887 336899999999863211112368


Q ss_pred             EeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        105 FNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       105 fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      ||+|++..+  .......++.++.++|||||.+++.
T Consensus       144 ~D~v~~~~~--~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          144 VDVIFEDVA--QPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEEEECCC--STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEECCC--CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            999998765  2222344599999999999999987

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.39  E-value=2e-12  Score=121.55  Aligned_cols=123  Identities=15%  Similarity=0.233  Sum_probs=94.4

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCccc
Q psy11646         23 SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLE   98 (433)
Q Consensus        23 ~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~   98 (433)
                      ..++..+...++.+|||+|||+|.++..++....+.  .+++++|+++.+++.|++++    +..++++..+|+.+.+++
T Consensus        86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~  163 (258)
T 2pwy_A           86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEK--GLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE  163 (258)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred             HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence            455666667889999999999999995444432333  49999999999999999986    236899999999876444


Q ss_pred             ccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhh
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLS  155 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~  155 (433)
                      +   ++||+|++.     .+++..+++++.++|+|||.+++..+...........+.
T Consensus       164 ~---~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~  212 (258)
T 2pwy_A          164 E---AAYDGVALD-----LMEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAE  212 (258)
T ss_dssp             T---TCEEEEEEE-----SSCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHT
T ss_pred             C---CCcCEEEEC-----CcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHH
Confidence            3   789999983     346668899999999999999998766544444444444

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.39  E-value=5.6e-13  Score=121.50  Aligned_cols=104  Identities=12%  Similarity=0.033  Sum_probs=80.9

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      ++.+|||+|||+|.++..+++.    +..+|+|+|+|+.|++.|++++   ...++++.++|+.+. ++ ...++||+|+
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~----~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~-~~-~~~~~fD~V~  127 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSR----YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSF-LA-QKGTPHNIVF  127 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT----TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHH-HS-SCCCCEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhc----CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHH-Hh-hcCCCCCEEE
Confidence            6789999999999999555542    2248999999999999999987   225899999998762 11 1236899999


Q ss_pred             EcccccchhhHHHHHHHHHH--hccCCCEEEEEecc
Q psy11646        110 SFYCLHWVQDQRQAISNIYN--LLMPGGEVLLLLNA  143 (433)
Q Consensus       110 s~~~l~~~~d~~~~l~~i~~--~LkpGG~lll~~~~  143 (433)
                      +...++ ..+...+++.+.+  +|+|||.+++....
T Consensus       128 ~~~p~~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          128 VDPPFR-RGLLEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             ECCSSS-TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             ECCCCC-CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            988855 4566778888866  59999999987644

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.39  E-value=1.6e-12  Score=123.31  Aligned_cols=124  Identities=13%  Similarity=0.234  Sum_probs=90.3

Q ss_pred             HHHHHHHHHhcCC-CCCCEEEEECCCC--ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC---CCCeEEEEecc
Q psy11646         19 AKLLSQYIDQFKW-TDNESVLDVGCGP--GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT---NPKLEFVVANI   92 (433)
Q Consensus        19 ~~ll~~l~~~l~~-~~~~~VLDIGcG~--G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~---~~~i~~~~~Di   92 (433)
                      +..+.+.+..+.. ....+|||||||+  +..+..+++...|.  .+|+++|.|+.|++.|++++.   ..+++|+++|+
T Consensus        63 r~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~--arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~  140 (277)
T 3giw_A           63 RDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPE--SRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADM  140 (277)
T ss_dssp             HHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTT--CEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCT
T ss_pred             HHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCC--CEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecc
Confidence            3444444444432 2346899999997  43443666655665  499999999999999999883   24699999999


Q ss_pred             cCCcc--c-ccccCcEe-----EEEEcccccchhh---HHHHHHHHHHhccCCCEEEEEeccC
Q psy11646         93 ADQNL--E-SIFLAKFN-----KIFSFYCLHWVQD---QRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        93 ~~~~l--~-~~~~~~fD-----~Vis~~~l~~~~d---~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      .+...  . ....+.||     .|+++.+|||+++   +..+++++.+.|+|||+|+++..+.
T Consensus       141 ~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~  203 (277)
T 3giw_A          141 LDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTA  203 (277)
T ss_dssp             TCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred             cChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence            87421  0 00124455     6889999999987   5689999999999999999987654

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.39  E-value=7.7e-13  Score=120.30  Aligned_cols=98  Identities=19%  Similarity=0.213  Sum_probs=79.5

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      ++.+|||+|||+|..+. .++...+.  .+++|+|+|+.+++.|+++.   ...++++.++|+.+.+ +.   ++||+|+
T Consensus        65 ~~~~vLDiG~G~G~~~~-~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~---~~~D~i~  137 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGI-PLSIVRPE--AHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SE---PPFDGVI  137 (207)
T ss_dssp             CSSEEEEETCTTTTTHH-HHHHHCTT--SEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CC---SCEEEEE
T ss_pred             CCCeEEEECCCCCHHHH-HHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-cc---CCcCEEE
Confidence            47899999999999994 44444443  49999999999999999876   3346999999998753 22   7899999


Q ss_pred             EcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        110 SFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       110 s~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +...    .+...+++++.++|+|||.+++..
T Consensus       138 ~~~~----~~~~~~l~~~~~~L~~gG~l~~~~  165 (207)
T 1jsx_A          138 SRAF----ASLNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             CSCS----SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             Eecc----CCHHHHHHHHHHhcCCCcEEEEEe
Confidence            8643    456789999999999999998864

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.39  E-value=1.3e-12  Score=124.63  Aligned_cols=125  Identities=18%  Similarity=0.323  Sum_probs=96.0

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----C--CCCeEEEEecccCC
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----T--NPKLEFVVANIADQ   95 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~--~~~i~~~~~Di~~~   95 (433)
                      +..++..+...++.+|||+|||+|.++..++....+.  .+++++|+++.+++.|++++    +  ..++++.++|+.+.
T Consensus        88 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~  165 (280)
T 1i9g_A           88 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPA--GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS  165 (280)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred             HHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc
Confidence            3455666667889999999999999995544433333  49999999999999999886    1  36899999999876


Q ss_pred             cccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhc
Q psy11646         96 NLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSR  156 (433)
Q Consensus        96 ~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~  156 (433)
                      +++.   ++||+|++.     .+++..++.++.++|+|||.+++..+...........+..
T Consensus       166 ~~~~---~~~D~v~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~  218 (280)
T 1i9g_A          166 ELPD---GSVDRAVLD-----MLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRA  218 (280)
T ss_dssp             CCCT---TCEEEEEEE-----SSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCC---CceeEEEEC-----CcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            5443   789999983     3356688999999999999999988766555555554443

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.39  E-value=2.1e-12  Score=127.58  Aligned_cols=111  Identities=17%  Similarity=0.188  Sum_probs=86.8

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCc
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQN   96 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~   96 (433)
                      ....+++.+.+.++.+|||||||+|..+. .+++..+.  .+++++|++ .++.  +++.    ...++++..+|+.+ +
T Consensus       172 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~-~l~~~~p~--~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~~-~  244 (348)
T 3lst_A          172 EHLILARAGDFPATGTVADVGGGRGGFLL-TVLREHPG--LQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFLR-E  244 (348)
T ss_dssp             THHHHHHHSCCCSSEEEEEETCTTSHHHH-HHHHHCTT--EEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTTT-C
T ss_pred             hHHHHHHhCCccCCceEEEECCccCHHHH-HHHHHCCC--CEEEEecCH-HHhh--cccccccCCCCCeEEEecCCCC-C
Confidence            34567777777888999999999999994 44555554  489999994 4554  3332    23579999999862 2


Q ss_pred             ccccccCcEeEEEEcccccchhhH--HHHHHHHHHhccCCCEEEEEecc
Q psy11646         97 LESIFLAKFNKIFSFYCLHWVQDQ--RQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        97 l~~~~~~~fD~Vis~~~l~~~~d~--~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      ++     +||+|++..++|++++.  ..++++++++|||||++++.+..
T Consensus       245 ~p-----~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~  288 (348)
T 3lst_A          245 VP-----HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAV  288 (348)
T ss_dssp             CC-----CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECC
T ss_pred             CC-----CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            32     79999999999999876  68999999999999999998653

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.38  E-value=9.6e-13  Score=125.60  Aligned_cols=105  Identities=16%  Similarity=0.276  Sum_probs=81.0

Q ss_pred             CCCEEEEECCCCCh----hHHHHhcccCCC-C-CcEEEEEeCCHHHHHHHHhhcC------------------------C
Q psy11646         33 DNESVLDVGCGPGN----VTSKLLLPNLPK-S-VVKLVGLDVSPNMIKHAKNHHT------------------------N   82 (433)
Q Consensus        33 ~~~~VLDIGcG~G~----~~~~~l~~~~~~-~-~~~v~gvDiS~~~l~~A~~~~~------------------------~   82 (433)
                      ++.+|||+|||+|.    ++ ..++...+. . ..+|+|+|+|+.|++.|++...                        .
T Consensus       105 ~~~rIld~GCgTGee~ysiA-i~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~  183 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIA-ITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  183 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHH-HHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCcEEEEeeccCChhHHHHH-HHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCC
Confidence            45799999999998    33 233333221 1 2599999999999999998640                        0


Q ss_pred             ----------CCeEEEEecccCCcccccccCcEeEEEEcccccchhhH--HHHHHHHHHhccCCCEEEEE
Q psy11646         83 ----------PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQ--RQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        83 ----------~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~--~~~l~~i~~~LkpGG~lll~  140 (433)
                                .++.|.++|+.+.+++  ..++||+|+|.++++|+++.  .++++++++.|+|||.+++.
T Consensus       184 ~~~~v~~~lr~~V~F~~~dl~~~~~~--~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          184 GLVRVRQELANYVEFSSVNLLEKQYN--VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCC--CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             CceeechhhcccCeEEecccCCCCCC--cCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence                      2589999999875443  12689999999999998654  78999999999999999873

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.38  E-value=2.7e-12  Score=127.93  Aligned_cols=112  Identities=20%  Similarity=0.411  Sum_probs=89.6

Q ss_pred             HHHHHHHHHhcC-CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcc
Q psy11646         19 AKLLSQYIDQFK-WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL   97 (433)
Q Consensus        19 ~~ll~~l~~~l~-~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l   97 (433)
                      ......+++.+. +.++.+|||||||+|.++ ..+++..|..  +++++|+ +.+++.|++.   .++++..+|+.+ ++
T Consensus       188 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~-~~l~~~~p~~--~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~  259 (368)
T 3reo_A          188 TITMKKILEMYNGFEGLTTIVDVGGGTGAVA-SMIVAKYPSI--NAINFDL-PHVIQDAPAF---SGVEHLGGDMFD-GV  259 (368)
T ss_dssp             HHHHHHHHTTCCTTTTCSEEEEETCTTSHHH-HHHHHHCTTC--EEEEEEC-HHHHTTCCCC---TTEEEEECCTTT-CC
T ss_pred             hhHHHHHHHhcccccCCCEEEEeCCCcCHHH-HHHHHhCCCC--EEEEEeh-HHHHHhhhhc---CCCEEEecCCCC-CC
Confidence            344556666665 567889999999999999 4555555654  8999999 9998887754   689999999976 45


Q ss_pred             cccccCcEeEEEEcccccchhhH--HHHHHHHHHhccCCCEEEEEecc
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQDQ--RQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d~--~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      ++   +  |+|++..++|++++.  ..++++++++|+|||++++.+..
T Consensus       260 p~---~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  302 (368)
T 3reo_A          260 PK---G--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYI  302 (368)
T ss_dssp             CC---C--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             CC---C--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            53   3  999999999988654  57899999999999999998654

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.38  E-value=2.4e-12  Score=128.70  Aligned_cols=114  Identities=19%  Similarity=0.237  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEeccc
Q psy11646         18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIA   93 (433)
Q Consensus        18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~   93 (433)
                      ...+...+.......++.+|||||||+|.++..+ ++.   +..+|+|+|+| .|++.|+++.    ...+++++++|++
T Consensus        48 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~l-a~~---g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~  122 (376)
T 3r0q_C           48 MDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWS-AQA---GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVE  122 (376)
T ss_dssp             HHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHH-HHT---TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGG
T ss_pred             HHHHHHHHHhccccCCCCEEEEeccCcCHHHHHH-Hhc---CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchh
Confidence            3444555555555678899999999999999444 432   32499999999 9999999887    2256999999998


Q ss_pred             CCcccccccCcEeEEEEcccccch---hhHHHHHHHHHHhccCCCEEEEE
Q psy11646         94 DQNLESIFLAKFNKIFSFYCLHWV---QDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        94 ~~~l~~~~~~~fD~Vis~~~l~~~---~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +.+++    ++||+|++..+.+++   .+...++..+.++|||||.+++.
T Consensus       123 ~~~~~----~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          123 DISLP----EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             GCCCS----SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred             hcCcC----CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence            86554    789999997655554   45788999999999999998764

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.38  E-value=1.4e-12  Score=128.97  Aligned_cols=100  Identities=19%  Similarity=0.276  Sum_probs=80.9

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      .++.+|||||||+|.++.. +++.   +..+|+|+|+|+ |++.|+++.    ...+++++++|+++.+++.   ++||+
T Consensus        65 ~~~~~VLDvGcG~G~~~~~-la~~---g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~fD~  136 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMF-AAKA---GARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPV---EKVDI  136 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHH-HHHT---TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS---SCEEE
T ss_pred             CCCCEEEEEeccchHHHHH-HHHC---CCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCC---CceEE
Confidence            5788999999999999844 4433   224999999995 999999887    2245999999999876554   89999


Q ss_pred             EEEccc---ccchhhHHHHHHHHHHhccCCCEEEE
Q psy11646        108 IFSFYC---LHWVQDQRQAISNIYNLLMPGGEVLL  139 (433)
Q Consensus       108 Vis~~~---l~~~~d~~~~l~~i~~~LkpGG~lll  139 (433)
                      |++..+   +++..+...++.++.++|||||.++.
T Consensus       137 Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          137 IISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             EEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             EEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence            999765   44446788999999999999999874

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.38  E-value=1.9e-12  Score=114.63  Aligned_cols=121  Identities=17%  Similarity=0.210  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC
Q psy11646         16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ   95 (433)
Q Consensus        16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~   95 (433)
                      +.+..+++. +.... .++.+|||+|||+|.++ ..+++    .+ +++|+|+|+.|++.      ..++++.++|+.+ 
T Consensus         8 ~~~~~l~~~-l~~~~-~~~~~vLD~GcG~G~~~-~~l~~----~~-~v~gvD~s~~~~~~------~~~~~~~~~d~~~-   72 (170)
T 3q87_B            8 EDTYTLMDA-LEREG-LEMKIVLDLGTSTGVIT-EQLRK----RN-TVVSTDLNIRALES------HRGGNLVRADLLC-   72 (170)
T ss_dssp             HHHHHHHHH-HHHHT-CCSCEEEEETCTTCHHH-HHHTT----TS-EEEEEESCHHHHHT------CSSSCEEECSTTT-
T ss_pred             ccHHHHHHH-HHhhc-CCCCeEEEeccCccHHH-HHHHh----cC-cEEEEECCHHHHhc------ccCCeEEECChhh-
Confidence            344555554 33322 35679999999999999 44442    22 99999999999987      2578999999977 


Q ss_pred             cccccccCcEeEEEEcccccchhhH---------HHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhh
Q psy11646         96 NLESIFLAKFNKIFSFYCLHWVQDQ---------RQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLS  155 (433)
Q Consensus        96 ~l~~~~~~~fD~Vis~~~l~~~~d~---------~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~  155 (433)
                      +++.   ++||+|+++.++++..+.         ...++++.+.+ |||.+++..............+.
T Consensus        73 ~~~~---~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~  137 (170)
T 3q87_B           73 SINQ---ESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLE  137 (170)
T ss_dssp             TBCG---GGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHH
T ss_pred             hccc---CCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHH
Confidence            3443   789999999999875443         56788888888 99999998755544434433333

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.38  E-value=1.1e-12  Score=121.50  Aligned_cols=104  Identities=22%  Similarity=0.351  Sum_probs=81.4

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEeccc-CCcc
Q psy11646         19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIA-DQNL   97 (433)
Q Consensus        19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~-~~~l   97 (433)
                      ..++..++..+. +++.+|||||||+|.++. .++..   + .+|+|+|+|+.|++.|+++.  .++++.++|+. ..++
T Consensus        35 ~~l~~~~~~~~~-~~~~~vLDiGcG~G~~~~-~l~~~---~-~~v~~vD~s~~~~~~a~~~~--~~~~~~~~d~~~~~~~  106 (226)
T 3m33_A           35 ELTFDLWLSRLL-TPQTRVLEAGCGHGPDAA-RFGPQ---A-ARWAAYDFSPELLKLARANA--PHADVYEWNGKGELPA  106 (226)
T ss_dssp             THHHHHHHHHHC-CTTCEEEEESCTTSHHHH-HHGGG---S-SEEEEEESCHHHHHHHHHHC--TTSEEEECCSCSSCCT
T ss_pred             HHHHHHHHHhcC-CCCCeEEEeCCCCCHHHH-HHHHc---C-CEEEEEECCHHHHHHHHHhC--CCceEEEcchhhccCC
Confidence            445555554432 578899999999999994 44433   2 59999999999999999984  68999999994 4333


Q ss_pred             cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEE
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVL  138 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~ll  138 (433)
                      +  .+++||+|+++      .++..+++++.++|||||.++
T Consensus       107 ~--~~~~fD~v~~~------~~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          107 G--LGAPFGLIVSR------RGPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             T--CCCCEEEEEEE------SCCSGGGGGHHHHEEEEEEEE
T ss_pred             c--CCCCEEEEEeC------CCHHHHHHHHHHHcCCCcEEE
Confidence            3  13799999997      356778999999999999988

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.37  E-value=1.6e-12  Score=128.31  Aligned_cols=120  Identities=25%  Similarity=0.355  Sum_probs=91.8

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccc
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIF  101 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~  101 (433)
                      .+++.+...++.+|||+|||+|.++ ..+++..+..  +++|+|+|+.|++.|+++.  ....+++...|+....     
T Consensus       187 ~ll~~l~~~~~~~VLDlGcG~G~~~-~~la~~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~-----  258 (343)
T 2pjd_A          187 LLLSTLTPHTKGKVLDVGCGAGVLS-VAFARHSPKI--RLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV-----  258 (343)
T ss_dssp             HHHHHSCTTCCSBCCBTTCTTSHHH-HHHHHHCTTC--BCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC-----
T ss_pred             HHHHhcCcCCCCeEEEecCccCHHH-HHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc-----
Confidence            3444554456779999999999999 4455454443  8999999999999999987  3334677888876532     


Q ss_pred             cCcEeEEEEcccccc-----hhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHH
Q psy11646        102 LAKFNKIFSFYCLHW-----VQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLY  151 (433)
Q Consensus       102 ~~~fD~Vis~~~l~~-----~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~  151 (433)
                      .++||+|+++.++|+     ..+...+++++.++|||||.+++......+....+
T Consensus       259 ~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l  313 (343)
T 2pjd_A          259 KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVL  313 (343)
T ss_dssp             CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHH
T ss_pred             cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHH
Confidence            378999999999985     34678899999999999999999876555543333

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.37  E-value=1.5e-12  Score=116.05  Aligned_cols=122  Identities=12%  Similarity=0.097  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHhcC-CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecc
Q psy11646         18 AAKLLSQYIDQFK-WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANI   92 (433)
Q Consensus        18 ~~~ll~~l~~~l~-~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di   92 (433)
                      ...+.+.+.+.+. ..++.+|||+|||+|.++..++. .   +..+++|+|+|+.+++.|++++   . ..++++.++|+
T Consensus        28 ~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~-~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~  103 (187)
T 2fhp_A           28 TDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVS-R---GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDA  103 (187)
T ss_dssp             CHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHH-T---TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             HHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHH-c---CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcH
Confidence            3444455555553 34788999999999999855544 2   2249999999999999999987   2 24799999998


Q ss_pred             cCCccc-ccccCcEeEEEEcccccchhhHHHHHHHH--HHhccCCCEEEEEeccC
Q psy11646         93 ADQNLE-SIFLAKFNKIFSFYCLHWVQDQRQAISNI--YNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        93 ~~~~l~-~~~~~~fD~Vis~~~l~~~~d~~~~l~~i--~~~LkpGG~lll~~~~~  144 (433)
                      .+.... ....++||+|+++.+++ ..+....+..+  .++|+|||.+++.....
T Consensus       104 ~~~~~~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  157 (187)
T 2fhp_A          104 NRALEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKT  157 (187)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             HHHHHHHHhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence            763110 01147899999998855 34556667777  88999999999876544

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.37  E-value=1.5e-12  Score=122.80  Aligned_cols=103  Identities=15%  Similarity=0.089  Sum_probs=82.2

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKI  108 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~V  108 (433)
                      .++.+|||||||+|..+ ..++...+.  .+|+++|+|+.+++.|+++.   +..+++++++|+++.+......++||+|
T Consensus        79 ~~~~~vLDiG~G~G~~~-i~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I  155 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPG-LPLKIVRPE--LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARA  155 (249)
T ss_dssp             CSSCEEEEETCTTTTTH-HHHHHHCTT--CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEE
T ss_pred             CCCCEEEEEcCCCCHHH-HHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEE
Confidence            46889999999999998 445555554  49999999999999999987   4457999999998754321223789999


Q ss_pred             EEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        109 FSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       109 is~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ++..+    .+...++..+.++|||||++++..
T Consensus       156 ~s~a~----~~~~~ll~~~~~~LkpgG~l~~~~  184 (249)
T 3g89_A          156 VARAV----APLCVLSELLLPFLEVGGAAVAMK  184 (249)
T ss_dssp             EEESS----CCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EECCc----CCHHHHHHHHHHHcCCCeEEEEEe
Confidence            99754    356788999999999999988754

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.37  E-value=2.3e-12  Score=121.25  Aligned_cols=123  Identities=16%  Similarity=0.242  Sum_probs=93.5

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC-CCeEEEEecccCCccc
Q psy11646         23 SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN-PKLEFVVANIADQNLE   98 (433)
Q Consensus        23 ~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~-~~i~~~~~Di~~~~l~   98 (433)
                      ..++..+...++.+|||+|||+|.++..++....+.  .+++++|+|+.+++.|++++   +. .++++.++|+.+. ++
T Consensus        83 ~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~  159 (255)
T 3mb5_A           83 ALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPE--GRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IE  159 (255)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CC
T ss_pred             HHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCC--eEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cC
Confidence            355666667889999999999999995554432444  49999999999999999987   32 3499999999754 44


Q ss_pred             ccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhc
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSR  156 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~  156 (433)
                      .   ++||+|++.     .+++..+++++.++|+|||.+++..+...........+..
T Consensus       160 ~---~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  209 (255)
T 3mb5_A          160 E---ENVDHVILD-----LPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLRE  209 (255)
T ss_dssp             C---CSEEEEEEC-----SSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred             C---CCcCEEEEC-----CCCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            3   789999984     3466778999999999999999887665554444444443

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.37  E-value=3.4e-12  Score=127.41  Aligned_cols=120  Identities=20%  Similarity=0.331  Sum_probs=90.0

Q ss_pred             HHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC---CCeEEEEecccCCccc
Q psy11646         25 YIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN---PKLEFVVANIADQNLE   98 (433)
Q Consensus        25 l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~---~~i~~~~~Di~~~~l~   98 (433)
                      +++.+...++.+|||+|||+|.++. .++...+.  .+|+|+|+|+.|++.|++++   +.   .++++...|+.+. ++
T Consensus       214 ll~~l~~~~~~~VLDlGcG~G~~s~-~la~~~p~--~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~-~~  289 (375)
T 4dcm_A          214 FMQHLPENLEGEIVDLGCGNGVIGL-TLLDKNPQ--AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VE  289 (375)
T ss_dssp             HHHTCCCSCCSEEEEETCTTCHHHH-HHHHHCTT--CEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT-CC
T ss_pred             HHHhCcccCCCeEEEEeCcchHHHH-HHHHHCCC--CEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc-CC
Confidence            4556665677899999999999994 45555444  49999999999999999987   21   2588899998763 33


Q ss_pred             ccccCcEeEEEEcccccchh-----hHHHHHHHHHHhccCCCEEEEEeccCCchhhHH
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQ-----DQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLY  151 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~-----d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~  151 (433)
                      .   ++||+|+++.++|+..     ....+++++.++|+|||.++++.....+.....
T Consensus       290 ~---~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l  344 (375)
T 4dcm_A          290 P---FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKL  344 (375)
T ss_dssp             T---TCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHH
T ss_pred             C---CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHH
Confidence            3   7899999999998642     234689999999999999999876555443333

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.37  E-value=1.3e-12  Score=122.92  Aligned_cols=121  Identities=14%  Similarity=0.120  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHhcCCC--CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEE
Q psy11646         16 LDAAKLLSQYIDQFKWT--DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVV   89 (433)
Q Consensus        16 ~~~~~ll~~l~~~l~~~--~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~   89 (433)
                      +....++..++..+...  ++.+|||+|||+|.++..++. ..+.  .+++|+|+|+.|++.|+++.   . ..++++.+
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~-~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~  122 (254)
T 2h00_A           46 LNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGA-TLNG--WYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVK  122 (254)
T ss_dssp             HHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHH-HHHC--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred             HHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHH-hCCC--CeEEEEECCHHHHHHHHHHHHHcCCCccEEEEE
Confidence            45566777776655432  577999999999998844443 3332  49999999999999999987   2 23599999


Q ss_pred             ecccCC---cccccccCcEeEEEEcccccchh-h--------------HHHHHHHHHHhccCCCEEEE
Q psy11646         90 ANIADQ---NLESIFLAKFNKIFSFYCLHWVQ-D--------------QRQAISNIYNLLMPGGEVLL  139 (433)
Q Consensus        90 ~Di~~~---~l~~~~~~~fD~Vis~~~l~~~~-d--------------~~~~l~~i~~~LkpGG~lll  139 (433)
                      +|+.+.   +++...+++||+|+++.++++.. +              ....+.+++++|||||.+.+
T Consensus       123 ~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~  190 (254)
T 2h00_A          123 VPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF  190 (254)
T ss_dssp             CCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred             cchhhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence            997652   12210025899999998776543 1              12346778888888887543

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.37  E-value=4.5e-12  Score=126.07  Aligned_cols=112  Identities=22%  Similarity=0.392  Sum_probs=90.0

Q ss_pred             HHHHHHHHHhcC-CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcc
Q psy11646         19 AKLLSQYIDQFK-WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL   97 (433)
Q Consensus        19 ~~ll~~l~~~l~-~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l   97 (433)
                      ......+++.+. +.+..+|||||||+|.++. .+++..|..  +++++|+ +.+++.|++.   .++++..+|+.+ ++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~-~l~~~~p~~--~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~  257 (364)
T 3p9c_A          186 IIITKKLLELYHGFEGLGTLVDVGGGVGATVA-AIAAHYPTI--KGVNFDL-PHVISEAPQF---PGVTHVGGDMFK-EV  257 (364)
T ss_dssp             HHHHHHHHHHCCTTTTCSEEEEETCTTSHHHH-HHHHHCTTC--EEEEEEC-HHHHTTCCCC---TTEEEEECCTTT-CC
T ss_pred             HHHHHHHHHhcccccCCCEEEEeCCCCCHHHH-HHHHHCCCC--eEEEecC-HHHHHhhhhc---CCeEEEeCCcCC-CC
Confidence            344556677666 6678899999999999994 455555654  8999999 8898887754   689999999987 55


Q ss_pred             cccccCcEeEEEEcccccchhh--HHHHHHHHHHhccCCCEEEEEecc
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQD--QRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      +.   +  |+|++..++|++++  ...+++++++.|||||++++.+..
T Consensus       258 p~---~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~  300 (364)
T 3p9c_A          258 PS---G--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCI  300 (364)
T ss_dssp             CC---C--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             CC---C--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            53   3  99999999998854  568899999999999999998654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.37  E-value=1.6e-12  Score=124.10  Aligned_cols=116  Identities=19%  Similarity=0.283  Sum_probs=87.3

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-C---CCCeEEEEecccCCcccc
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-T---NPKLEFVVANIADQNLES   99 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~---~~~i~~~~~Di~~~~l~~   99 (433)
                      .++..+...++.+|||+|||+|..+..++....+.  .+++|+|+++.+++.|++++ .   ..++++.++|+.+ +++.
T Consensus       101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~  177 (275)
T 1yb2_A          101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGK--GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISD  177 (275)
T ss_dssp             -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTS--SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCS
T ss_pred             HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcC
Confidence            55566667789999999999999995444332333  49999999999999999987 2   2579999999876 3443


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhH
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDL  150 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~  150 (433)
                         ++||+|++     +.+++..+++++.++|+|||.+++..+........
T Consensus       178 ---~~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~  220 (275)
T 1yb2_A          178 ---QMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKT  220 (275)
T ss_dssp             ---CCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHH
T ss_pred             ---CCccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHH
Confidence               78999998     34567789999999999999999987654333333

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.36  E-value=2.2e-12  Score=119.90  Aligned_cols=112  Identities=17%  Similarity=0.193  Sum_probs=80.8

Q ss_pred             HHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcccccccCc
Q psy11646         26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLESIFLAK  104 (433)
Q Consensus        26 ~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~~~~~~  104 (433)
                      ++.+..+++.+|||+|||+|.++..++....+.  .+++|+|+|+.|++.+.++. ...++++.++|+.+........++
T Consensus        70 l~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~--~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~  147 (233)
T 2ipx_A           70 VDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPD--GLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAM  147 (233)
T ss_dssp             CSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTT--CEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCC
T ss_pred             HheecCCCCCEEEEEcccCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCc
Confidence            344556788999999999999994444332233  39999999988766665554 226899999999874211123478


Q ss_pred             EeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        105 FNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       105 fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ||+|++..+  .......++.++.++|||||.+++..
T Consensus       148 ~D~V~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~  182 (233)
T 2ipx_A          148 VDVIFADVA--QPDQTRIVALNAHTFLRNGGHFVISI  182 (233)
T ss_dssp             EEEEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEEcCC--CccHHHHHHHHHHHHcCCCeEEEEEE
Confidence            999999665  22233556889999999999999864

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.36  E-value=3.6e-12  Score=128.81  Aligned_cols=117  Identities=16%  Similarity=0.229  Sum_probs=88.5

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHH-------Hhhc---C--CCCeEE
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHA-------KNHH---T--NPKLEF   87 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A-------~~~~---~--~~~i~~   87 (433)
                      ..+..+++.+...++.+|||||||+|..+ ..++...+.  .+|+|+|+++.+++.|       ++++   +  ..++++
T Consensus       229 ~~v~~ml~~l~l~~g~~VLDLGCGsG~la-~~LA~~~g~--~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~  305 (433)
T 1u2z_A          229 NFLSDVYQQCQLKKGDTFMDLGSGVGNCV-VQAALECGC--ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF  305 (433)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESCTTSHHH-HHHHHHHCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCcCHHH-HHHHHHCCC--CEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEE
Confidence            44556677777788999999999999999 444544333  3899999999999988       7765   2  368999


Q ss_pred             EEecccCCc--ccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         88 VVANIADQN--LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        88 ~~~Di~~~~--l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .++|....+  +. ...++||+|+++.++ +.++...+++++.+.|||||.+++..
T Consensus       306 i~gD~~~~~~~~~-~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          306 SLKKSFVDNNRVA-ELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             EESSCSTTCHHHH-HHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             EEcCccccccccc-cccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEee
Confidence            887643221  11 113689999998777 34678889999999999999998864

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.36  E-value=4.8e-12  Score=119.05  Aligned_cols=115  Identities=17%  Similarity=0.209  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEeccc
Q psy11646         18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIA   93 (433)
Q Consensus        18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~   93 (433)
                      ...++..++..   .++.+|||||||+|..+ ..++...+.+ .+|+++|+|+.+++.|++++   + ..++++.++|+.
T Consensus        51 ~~~~l~~l~~~---~~~~~VLdiG~G~G~~~-~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~  125 (248)
T 3tfw_A           51 QGQFLALLVRL---TQAKRILEIGTLGGYST-IWMARELPAD-GQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPAL  125 (248)
T ss_dssp             HHHHHHHHHHH---HTCSEEEEECCTTSHHH-HHHHTTSCTT-CEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred             HHHHHHHHHhh---cCCCEEEEecCCchHHH-HHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence            34444444433   46789999999999999 4555555533 59999999999999999987   2 247999999986


Q ss_pred             CCccccc-ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         94 DQNLESI-FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        94 ~~~l~~~-~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +. ++.. ..++||+|++...   ..+....++++.++|||||.+++..
T Consensus       126 ~~-l~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~~~  170 (248)
T 3tfw_A          126 QS-LESLGECPAFDLIFIDAD---KPNNPHYLRWALRYSRPGTLIIGDN  170 (248)
T ss_dssp             HH-HHTCCSCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             HH-HHhcCCCCCeEEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEeC
Confidence            53 2211 1258999998654   4456778999999999999988754

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.36  E-value=8.7e-13  Score=130.85  Aligned_cols=114  Identities=14%  Similarity=0.253  Sum_probs=86.6

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCC------CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEeccc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCG------PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIA   93 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG------~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~   93 (433)
                      .+.+.++..+. .++.+|||||||      +|..+..+++..++..  +|+|+|+|+.|.      ....+++|+++|+.
T Consensus       204 ~~Ye~lL~~l~-~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a--~V~GVDiSp~m~------~~~~rI~fv~GDa~  274 (419)
T 3sso_A          204 PHYDRHFRDYR-NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRG--QIYGLDIMDKSH------VDELRIRTIQGDQN  274 (419)
T ss_dssp             HHHHHHHGGGT-TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTC--EEEEEESSCCGG------GCBTTEEEEECCTT
T ss_pred             HHHHHHHHhhc-CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCC--EEEEEECCHHHh------hcCCCcEEEEeccc
Confidence            34445555554 356899999999      6666657776666654  999999999983      13368999999998


Q ss_pred             CCcccc---cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         94 DQNLES---IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        94 ~~~l~~---~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      +.++..   ...++||+|++.. .|+..+...++++++++|||||++++.+..
T Consensus       275 dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          275 DAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             CHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             ccchhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence            865541   0138999999975 477788999999999999999999987643

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.36  E-value=3.4e-12  Score=126.91  Aligned_cols=104  Identities=12%  Similarity=0.240  Sum_probs=85.5

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC----CCCeEEEEecccCC--cccccccCcE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----NPKLEFVVANIADQ--NLESIFLAKF  105 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~----~~~i~~~~~Di~~~--~l~~~~~~~f  105 (433)
                      ..+.+|||||||+|.++. .+++..|..  +++++|+ +.+++.|+++..    ..++++..+|+.+.  +++    ++|
T Consensus       178 ~~~~~vlDvG~G~G~~~~-~l~~~~p~~--~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p----~~~  249 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWAT-QCVQYNKEV--EVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP----TGF  249 (363)
T ss_dssp             GCCSEEEEESCTTCHHHH-HHHHHSTTC--EEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC----CCC
T ss_pred             cCCCEEEEeCCCcCHHHH-HHHHhCCCC--EEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC----CCc
Confidence            356799999999999994 445455544  9999999 999999999872    24799999999875  233    689


Q ss_pred             eEEEEcccccchhhH--HHHHHHHHHhccCCCEEEEEecc
Q psy11646        106 NKIFSFYCLHWVQDQ--RQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       106 D~Vis~~~l~~~~d~--~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      |+|++..++|++++.  ..+++++++.|+|||++++.+..
T Consensus       250 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  289 (363)
T 3dp7_A          250 DAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETL  289 (363)
T ss_dssp             SEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             CEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeec
Confidence            999999999988654  57899999999999999997643

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.36  E-value=7.3e-12  Score=121.49  Aligned_cols=107  Identities=15%  Similarity=0.125  Sum_probs=79.7

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-------CCCCeEEEEecccCCcccccccC
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-------TNPKLEFVVANIADQNLESIFLA  103 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-------~~~~i~~~~~Di~~~~l~~~~~~  103 (433)
                      .+++.+|||||||+|..+..+++ ..+.  .+++++|+++.+++.|++++       ..+++++..+|+...... ...+
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~-~~~~--~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~~~  168 (304)
T 3bwc_A           93 HPKPERVLIIGGGDGGVLREVLR-HGTV--EHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ-TPDN  168 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHHT-CTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS-SCTT
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHh-CCCC--CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh-ccCC
Confidence            35678999999999999955543 3332  49999999999999999876       246899999998764221 1237


Q ss_pred             cEeEEEEcccccchhhH----HHHHHHHHHhccCCCEEEEEe
Q psy11646        104 KFNKIFSFYCLHWVQDQ----RQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       104 ~fD~Vis~~~l~~~~d~----~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +||+|++....++.+..    ..++++++++|+|||.+++..
T Consensus       169 ~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  210 (304)
T 3bwc_A          169 TYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG  210 (304)
T ss_dssp             CEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            89999998766554322    578999999999999998863

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.36  E-value=2.3e-12  Score=127.74  Aligned_cols=112  Identities=21%  Similarity=0.371  Sum_probs=90.4

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCccc
Q psy11646         23 SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNLE   98 (433)
Q Consensus        23 ~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l~   98 (433)
                      ..+++.+...++.+|||||||+|..+. .+++..+.  .+++++|+ +.+++.|++++   + ..++++..+|+.+ +++
T Consensus       173 ~~l~~~~~~~~~~~vLDvG~G~G~~~~-~l~~~~~~--~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~  247 (360)
T 1tw3_A          173 DAPAAAYDWTNVRHVLDVGGGKGGFAA-AIARRAPH--VSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLP  247 (360)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHH-HHHHHCTT--CEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS
T ss_pred             HHHHHhCCCccCcEEEEeCCcCcHHHH-HHHHhCCC--CEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCC
Confidence            345566666788999999999999994 44445554  48999999 99999999876   1 2479999999875 344


Q ss_pred             ccccCcEeEEEEcccccchhhH--HHHHHHHHHhccCCCEEEEEecc
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQDQ--RQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~d~--~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                          ..||+|++..++|++++.  ..++++++++|+|||++++.+..
T Consensus       248 ----~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          248 ----RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             ----SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ----CCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence                359999999999998765  58999999999999999988654

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.36  E-value=1e-12  Score=115.37  Aligned_cols=104  Identities=16%  Similarity=0.104  Sum_probs=79.3

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCccccc--ccCcEeE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESI--FLAKFNK  107 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~--~~~~fD~  107 (433)
                      ++.+|||+|||+|..+..++. .   + .+++|+|+|+.+++.|+++.   .. ++++.++|+.+. ++..  ..++||+
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~-~---~-~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-~~~~~~~~~~~D~  113 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAAS-E---G-WEAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVF-LPEAKAQGERFTV  113 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHH-T---T-CEEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHH-HHHHHHTTCCEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHH-C---C-CeEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHH-HHhhhccCCceEE
Confidence            678999999999999954443 2   2 36999999999999999987   22 789999998763 1211  1248999


Q ss_pred             EEEcccccchhhHHHHHHHHH--HhccCCCEEEEEeccCC
Q psy11646        108 IFSFYCLHWVQDQRQAISNIY--NLLMPGGEVLLLLNAFN  145 (433)
Q Consensus       108 Vis~~~l~~~~d~~~~l~~i~--~~LkpGG~lll~~~~~~  145 (433)
                      |+++.+++  .+...+++.+.  ++|+|||.+++......
T Consensus       114 i~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~  151 (171)
T 1ws6_A          114 AFMAPPYA--MDLAALFGELLASGLVEAGGLYVLQHPKDL  151 (171)
T ss_dssp             EEECCCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred             EEECCCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence            99998876  45556666666  99999999998765443

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.35  E-value=2.3e-12  Score=127.52  Aligned_cols=100  Identities=21%  Similarity=0.396  Sum_probs=83.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEE
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFS  110 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis  110 (433)
                      +.++.+|||||||+|..+ ..+++..|..  +++++|+ +.+++.|++.   .++++..+|+.+ +++     .||+|++
T Consensus       186 ~~~~~~vlDvG~G~G~~~-~~l~~~~p~~--~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~p-----~~D~v~~  252 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTA-KIICETFPKL--KCIVFDR-PQVVENLSGS---NNLTYVGGDMFT-SIP-----NADAVLL  252 (352)
T ss_dssp             HTTCSEEEEETCTTSHHH-HHHHHHCTTC--EEEEEEC-HHHHTTCCCB---TTEEEEECCTTT-CCC-----CCSEEEE
T ss_pred             cccCceEEEeCCCccHHH-HHHHHHCCCC--eEEEeeC-HHHHhhcccC---CCcEEEeccccC-CCC-----CccEEEe
Confidence            456789999999999999 4555555544  8999999 9999988764   569999999865 333     3999999


Q ss_pred             cccccchhhHH--HHHHHHHHhccC---CCEEEEEecc
Q psy11646        111 FYCLHWVQDQR--QAISNIYNLLMP---GGEVLLLLNA  143 (433)
Q Consensus       111 ~~~l~~~~d~~--~~l~~i~~~Lkp---GG~lll~~~~  143 (433)
                      ..++|++++..  .++++++++|||   ||++++.+..
T Consensus       253 ~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  290 (352)
T 1fp2_A          253 KYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMV  290 (352)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred             ehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence            99999998776  899999999999   9999998654

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.35  E-value=5.2e-12  Score=117.49  Aligned_cols=115  Identities=17%  Similarity=0.217  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEec
Q psy11646         16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVAN   91 (433)
Q Consensus        16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~D   91 (433)
                      +....++..++..   .++.+|||||||+|..+. .++...+.  .+|+++|+++.+++.|++++   + ..+++++++|
T Consensus        57 ~~~~~~l~~~~~~---~~~~~vLDiG~G~G~~~~-~la~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d  130 (232)
T 3ntv_A           57 RLTLDLIKQLIRM---NNVKNILEIGTAIGYSSM-QFASISDD--IHVTTIERNETMIQYAKQNLATYHFENQVRIIEGN  130 (232)
T ss_dssp             HHHHHHHHHHHHH---HTCCEEEEECCSSSHHHH-HHHTTCTT--CEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred             HHHHHHHHHHHhh---cCCCEEEEEeCchhHHHH-HHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECC
Confidence            3444455555443   467899999999999994 45544443  49999999999999999987   2 2489999999


Q ss_pred             ccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646         92 IADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        92 i~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +.+. ++....++||+|++...   ..+...+++++.++|+|||.+++.
T Consensus       131 ~~~~-~~~~~~~~fD~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~d  175 (232)
T 3ntv_A          131 ALEQ-FENVNDKVYDMIFIDAA---KAQSKKFFEIYTPLLKHQGLVITD  175 (232)
T ss_dssp             GGGC-HHHHTTSCEEEEEEETT---SSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred             HHHH-HHhhccCCccEEEEcCc---HHHHHHHHHHHHHhcCCCeEEEEe
Confidence            8764 22012478999998754   345677899999999999999874

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.34  E-value=5.2e-12  Score=116.40  Aligned_cols=116  Identities=20%  Similarity=0.229  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecc
Q psy11646         17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANI   92 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di   92 (433)
                      ....++..++..   .++.+|||||||+|..+ ..++...+.+ .+|+++|+++.+++.|++++   + ..++++.++|+
T Consensus        51 ~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~-~~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  125 (225)
T 3tr6_A           51 EQAQLLALLVKL---MQAKKVIDIGTFTGYSA-IAMGLALPKD-GTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPA  125 (225)
T ss_dssp             HHHHHHHHHHHH---HTCSEEEEECCTTSHHH-HHHHTTCCTT-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             HHHHHHHHHHHh---hCCCEEEEeCCcchHHH-HHHHHhCCCC-CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCH
Confidence            344555555543   36779999999999999 4555555433 59999999999999999987   2 24699999998


Q ss_pred             cCCccccccc----CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         93 ADQNLESIFL----AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        93 ~~~~l~~~~~----~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .+. ++....    ++||+|++...   ..+...+++++.++|+|||.+++..
T Consensus       126 ~~~-~~~~~~~~~~~~fD~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~  174 (225)
T 3tr6_A          126 KDT-LAELIHAGQAWQYDLIYIDAD---KANTDLYYEESLKLLREGGLIAVDN  174 (225)
T ss_dssp             HHH-HHHHHTTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHH-HHHhhhccCCCCccEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            653 222111    68999997554   3456788999999999999998864

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.34  E-value=1.7e-12  Score=121.99  Aligned_cols=121  Identities=13%  Similarity=0.126  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhccc-CCCCCcEEEEEeCCHHHHHHHHhhcCCC-------C-----
Q psy11646         18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPN-LPKSVVKLVGLDVSPNMIKHAKNHHTNP-------K-----   84 (433)
Q Consensus        18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~-~~~~~~~v~gvDiS~~~l~~A~~~~~~~-------~-----   84 (433)
                      +..++..+++.+...++.+|||+|||+|.++..++... .+.  .+++|+|+|+.+++.|+++....       +     
T Consensus        36 a~~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~--~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~  113 (250)
T 1o9g_A           36 ATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSL--RQVIASDVDPAPLELAAKNLALLSPAGLTARELERR  113 (250)
T ss_dssp             HHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGE--EEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCC--CeEEEEECCHHHHHHHHHHHHHhhhccccccchhhh
Confidence            34677777766654467899999999999985444321 222  58999999999999999876211       1     


Q ss_pred             --------------------eE-------------EEEecccCCcccc--c-ccCcEeEEEEcccccch---------hh
Q psy11646         85 --------------------LE-------------FVVANIADQNLES--I-FLAKFNKIFSFYCLHWV---------QD  119 (433)
Q Consensus        85 --------------------i~-------------~~~~Di~~~~l~~--~-~~~~fD~Vis~~~l~~~---------~d  119 (433)
                                          ++             +.++|+.+. .+.  . ...+||+|+++.++++.         ..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~  192 (250)
T 1o9g_A          114 EQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDP-RALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQP  192 (250)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCG-GGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHH
T ss_pred             hhhhhcccccchhhhhhhhhhhhhccccccccccceeecccccc-cccccccCCCCceEEEeCCCeeccccccccccccH
Confidence                                66             999998763 210  0 12489999998876544         33


Q ss_pred             HHHHHHHHHHhccCCCEEEEEe
Q psy11646        120 QRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       120 ~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ...+++++.++|+|||+++++.
T Consensus       193 ~~~~l~~~~~~LkpgG~l~~~~  214 (250)
T 1o9g_A          193 VAGLLRSLASALPAHAVIAVTD  214 (250)
T ss_dssp             HHHHHHHHHHHSCTTCEEEEEE
T ss_pred             HHHHHHHHHHhcCCCcEEEEeC
Confidence            5688999999999999999854

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.34  E-value=1.9e-12  Score=120.17  Aligned_cols=105  Identities=16%  Similarity=0.171  Sum_probs=77.4

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCC-HHHHHHH---Hhhc---CCCCeEEEEecccCCcccccccCc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVS-PNMIKHA---KNHH---TNPKLEFVVANIADQNLESIFLAK  104 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS-~~~l~~A---~~~~---~~~~i~~~~~Di~~~~l~~~~~~~  104 (433)
                      .++.+|||||||+|.++. .++...+.  .+|+|+|+| +.|++.|   +++.   +..++.+.++|++..+  ....+.
T Consensus        23 ~~~~~vLDiGCG~G~~~~-~la~~~~~--~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~--~~~~d~   97 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIY-KLAINDQN--TFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLP--FELKNI   97 (225)
T ss_dssp             TCSEEEEEETCTTSHHHH-HHHHTCTT--EEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCC--GGGTTC
T ss_pred             CCCCEEEEEeccCcHHHH-HHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhh--hhccCe
Confidence            578899999999999994 44433332  589999999 7777776   6655   3467999999998763  222266


Q ss_pred             EeEEEEcccccch-----hhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        105 FNKIFSFYCLHWV-----QDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       105 fD~Vis~~~l~~~-----~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +|.|.++..+.+.     .+...++++++++|||||.+++..
T Consensus        98 v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~  139 (225)
T 3p2e_A           98 ADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT  139 (225)
T ss_dssp             EEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence            7888777654332     234578999999999999999843

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.34  E-value=9.6e-12  Score=119.24  Aligned_cols=120  Identities=18%  Similarity=0.236  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeC-CHHHHHHHHhhc-----CC--------C
Q psy11646         18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDV-SPNMIKHAKNHH-----TN--------P   83 (433)
Q Consensus        18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDi-S~~~l~~A~~~~-----~~--------~   83 (433)
                      ...+.+.+.......++.+|||||||+|..+. .++..   +..+|+|+|+ |+.+++.|+++.     ..        .
T Consensus        64 ~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~-~~a~~---~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~  139 (281)
T 3bzb_A           64 ARALADTLCWQPELIAGKTVCELGAGAGLVSI-VAFLA---GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRA  139 (281)
T ss_dssp             HHHHHHHHHHCGGGTTTCEEEETTCTTSHHHH-HHHHT---TCSEEEEEECSCHHHHHHHHHHHHTTCC----------C
T ss_pred             HHHHHHHHHhcchhcCCCeEEEecccccHHHH-HHHHc---CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCC
Confidence            44555555554444578899999999999984 44432   2248999999 899999999886     11        2


Q ss_pred             CeEEEEecccCCccccc----ccCcEeEEEEcccccchhhHHHHHHHHHHhcc---C--CCEEEEEec
Q psy11646         84 KLEFVVANIADQNLESI----FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLM---P--GGEVLLLLN  142 (433)
Q Consensus        84 ~i~~~~~Di~~~~l~~~----~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~Lk---p--GG~lll~~~  142 (433)
                      ++++...|..+.. ...    ..++||+|++..++++.++...+++.+.++|+   |  ||.+++...
T Consensus       140 ~v~~~~~~~~~~~-~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~  206 (281)
T 3bzb_A          140 SPKVVPYRWGDSP-DSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFT  206 (281)
T ss_dssp             CCEEEECCTTSCT-HHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEEC
T ss_pred             CeEEEEecCCCcc-HHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEE
Confidence            5777777765421 111    24789999999999999999999999999999   9  998877643

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.34  E-value=5.1e-12  Score=117.62  Aligned_cols=110  Identities=13%  Similarity=0.274  Sum_probs=85.2

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcc
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNL   97 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l   97 (433)
                      +...+++.+...++.+|||||||+|.++. .+++..+   .+++++|+++.+++.|+++.   +..++++..+|+.. ++
T Consensus        79 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~-~la~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~  153 (235)
T 1jg1_A           79 MVAIMLEIANLKPGMNILEVGTGSGWNAA-LISEIVK---TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSK-GF  153 (235)
T ss_dssp             HHHHHHHHHTCCTTCCEEEECCTTSHHHH-HHHHHHC---SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG-CC
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCcCHHHH-HHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCccc-CC
Confidence            44455555666788999999999999994 4454433   38999999999999999986   33569999999732 23


Q ss_pred             cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      +.  ...||+|++..+++++.+      ++.++|+|||.+++....
T Consensus       154 ~~--~~~fD~Ii~~~~~~~~~~------~~~~~L~pgG~lvi~~~~  191 (235)
T 1jg1_A          154 PP--KAPYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIPVGS  191 (235)
T ss_dssp             GG--GCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEECS
T ss_pred             CC--CCCccEEEECCcHHHHHH------HHHHhcCCCcEEEEEEec
Confidence            32  245999999999988753      678999999999998654

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.34  E-value=8.3e-12  Score=115.20  Aligned_cols=102  Identities=22%  Similarity=0.325  Sum_probs=80.3

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-C-------CCCeEEEEecccCCccccccc
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-T-------NPKLEFVVANIADQNLESIFL  102 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~-------~~~i~~~~~Di~~~~l~~~~~  102 (433)
                      .+++.+|||+|||+|..+. .+++..... .+|+++|+|+.+++.|+++. .       ..++++.++|+......   .
T Consensus        75 ~~~~~~vLDiG~G~G~~~~-~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~  149 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTA-CFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE---E  149 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHH-HHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG---G
T ss_pred             CCCCCEEEEEcCCcCHHHH-HHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc---C
Confidence            4678999999999999994 444433221 39999999999999999876 1       35899999998754332   3


Q ss_pred             CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646        103 AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      ++||+|++..+++++      ++++.++|||||.+++....
T Consensus       150 ~~fD~i~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          150 APYDAIHVGAAAPVV------PQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             CCEEEEEECSBBSSC------CHHHHHTEEEEEEEEEEESC
T ss_pred             CCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEec
Confidence            789999999988765      35788999999999997654

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.33  E-value=6.6e-12  Score=115.64  Aligned_cols=116  Identities=21%  Similarity=0.214  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecc
Q psy11646         17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANI   92 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di   92 (433)
                      ....++..++..   .++.+|||||||+|..+ ..++...+.+ .+++++|+++.+++.|++++   + ..+++++++|+
T Consensus        45 ~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~-~~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  119 (223)
T 3duw_A           45 TQGKFLQLLVQI---QGARNILEIGTLGGYST-IWLARGLSSG-GRVVTLEASEKHADIARSNIERANLNDRVEVRTGLA  119 (223)
T ss_dssp             HHHHHHHHHHHH---HTCSEEEEECCTTSHHH-HHHHTTCCSS-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             HHHHHHHHHHHh---hCCCEEEEecCCccHHH-HHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            334455544443   46789999999999999 5555555533 49999999999999999887   2 24699999998


Q ss_pred             cCCcccccc---cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         93 ADQNLESIF---LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        93 ~~~~l~~~~---~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .+. ++...   .++||+|++....   ......++++.++|+|||.+++..
T Consensus       120 ~~~-~~~~~~~~~~~fD~v~~d~~~---~~~~~~l~~~~~~L~pgG~lv~~~  167 (223)
T 3duw_A          120 LDS-LQQIENEKYEPFDFIFIDADK---QNNPAYFEWALKLSRPGTVIIGDN  167 (223)
T ss_dssp             HHH-HHHHHHTTCCCCSEEEECSCG---GGHHHHHHHHHHTCCTTCEEEEES
T ss_pred             HHH-HHHHHhcCCCCcCEEEEcCCc---HHHHHHHHHHHHhcCCCcEEEEeC
Confidence            653 22211   1579999987663   345688999999999999888754

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.33  E-value=2.7e-12  Score=117.52  Aligned_cols=87  Identities=18%  Similarity=0.247  Sum_probs=73.9

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSF  111 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~  111 (433)
                      .++.+|||||||+|.++ ..++       .+++|+|+|+.            ++++.++|+...+++.   ++||+|++.
T Consensus        66 ~~~~~vLDiG~G~G~~~-~~l~-------~~v~~~D~s~~------------~~~~~~~d~~~~~~~~---~~fD~v~~~  122 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLA-SSIR-------NPVHCFDLASL------------DPRVTVCDMAQVPLED---ESVDVAVFC  122 (215)
T ss_dssp             CTTSCEEEETCTTCHHH-HHCC-------SCEEEEESSCS------------STTEEESCTTSCSCCT---TCEEEEEEE
T ss_pred             CCCCeEEEECCcCCHHH-HHhh-------ccEEEEeCCCC------------CceEEEeccccCCCCC---CCEeEEEEe
Confidence            56789999999999998 4442       38999999987            4678889988765544   789999999


Q ss_pred             ccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646        112 YCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       112 ~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      .++|+ .+...+++++.++|+|||.+++.+.
T Consensus       123 ~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~  152 (215)
T 2zfu_A          123 LSLMG-TNIRDFLEEANRVLKPGGLLKVAEV  152 (215)
T ss_dssp             SCCCS-SCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhccc-cCHHHHHHHHHHhCCCCeEEEEEEc
Confidence            99986 7899999999999999999998754

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.32  E-value=9.5e-12  Score=114.89  Aligned_cols=104  Identities=18%  Similarity=0.281  Sum_probs=81.1

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCC----CCCcEEEEEeCCHHHHHHHHhhc---C-----CCCeEEEEecccCCccc
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLP----KSVVKLVGLDVSPNMIKHAKNHH---T-----NPKLEFVVANIADQNLE   98 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~----~~~~~v~gvDiS~~~l~~A~~~~---~-----~~~i~~~~~Di~~~~l~   98 (433)
                      .+++.+|||||||+|..+. .++....    .. .+|+++|+++.+++.|+++.   .     ..++++..+|+......
T Consensus        78 ~~~~~~VLdiG~G~G~~~~-~la~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  155 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTV-CMAIKMNVLENKN-SYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEE  155 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHH-HHHHHTTTTTCTT-CEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHH
T ss_pred             CCCCCEEEEECCCCCHHHH-HHHHHhcccCCCC-CEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccc
Confidence            4678999999999999994 4444432    11 39999999999999999986   2     46899999998774300


Q ss_pred             c-cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         99 S-IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        99 ~-~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      . ...++||+|++..+++++      ++++.++|+|||++++...
T Consensus       156 ~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          156 EKKELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHHHHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEE
T ss_pred             cCccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEc
Confidence            0 113789999999998875      4778999999999998764

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.32  E-value=7.6e-12  Score=122.66  Aligned_cols=101  Identities=24%  Similarity=0.387  Sum_probs=79.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEe
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFN  106 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD  106 (433)
                      ..++.+|||||||+|.++. .+++.   +..+|+|+|+| .|++.|+++.    ...+++++.+|+.+.+++.   ++||
T Consensus        36 ~~~~~~VLDiGcGtG~ls~-~la~~---g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~D  107 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSM-FAAKH---GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPF---PKVD  107 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHH-HHHHT---CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSS---SCEE
T ss_pred             hcCCCEEEEecCccHHHHH-HHHHC---CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCC---Cccc
Confidence            3578899999999999984 44432   22489999999 5999999886    2257999999998866553   7899


Q ss_pred             EEEEccc---ccchhhHHHHHHHHHHhccCCCEEEE
Q psy11646        107 KIFSFYC---LHWVQDQRQAISNIYNLLMPGGEVLL  139 (433)
Q Consensus       107 ~Vis~~~---l~~~~d~~~~l~~i~~~LkpGG~lll  139 (433)
                      +|++..+   +++......++.++.++|+|||.++.
T Consensus       108 ~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          108 IIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             EEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             EEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            9999854   34445678899999999999999873

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.32  E-value=9.7e-12  Score=122.92  Aligned_cols=113  Identities=17%  Similarity=0.228  Sum_probs=88.2

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccC
Q psy11646         19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIAD   94 (433)
Q Consensus        19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~   94 (433)
                      ......+.+.+...++.+|||||||+|.++.. +++.   +..+|+|+|+|+ +++.|+++.   + ..+++++.+|+++
T Consensus        36 ~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~-la~~---g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~  110 (348)
T 2y1w_A           36 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFF-AAQA---GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEE  110 (348)
T ss_dssp             HHHHHHHHHTGGGTTTCEEEEETCTTSHHHHH-HHHT---TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred             HHHHHHHHhccccCCcCEEEEcCCCccHHHHH-HHhC---CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhh
Confidence            34445666666667889999999999999944 4432   224999999996 889998876   2 2679999999988


Q ss_pred             CcccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEE
Q psy11646         95 QNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        95 ~~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      .+++    ++||+|++..+++|+.  +....+.++.++|||||.+++.
T Consensus       111 ~~~~----~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          111 VSLP----EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             CCCS----SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             CCCC----CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            6544    6899999998877663  4567888999999999998854

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.31  E-value=4.6e-13  Score=124.94  Aligned_cols=98  Identities=20%  Similarity=0.313  Sum_probs=82.2

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC-CCeEEEEecccCCcccccccCcEeEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN-PKLEFVVANIADQNLESIFLAKFNKI  108 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~-~~i~~~~~Di~~~~l~~~~~~~fD~V  108 (433)
                      ++.+|||+|||+|..+..++. .   + .+|+|+|+|+.|++.|++++   +. .+++++++|+.+.+ +   .++||+|
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~-~---~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~---~~~~D~v  148 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFAL-T---G-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-S---FLKADVV  148 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHH-T---T-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-G---GCCCSEE
T ss_pred             CCCEEEECccccCHHHHHHHH-c---C-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-c---cCCCCEE
Confidence            688999999999999955443 2   2 59999999999999999987   22 47999999998754 2   2799999


Q ss_pred             EEcccccchhhHHHHHHHHHHhccCCCEEEE
Q psy11646        109 FSFYCLHWVQDQRQAISNIYNLLMPGGEVLL  139 (433)
Q Consensus       109 is~~~l~~~~d~~~~l~~i~~~LkpGG~lll  139 (433)
                      +++.++++..+....+.+++++|+|||.+++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~  179 (241)
T 3gdh_A          149 FLSPPWGGPDYATAETFDIRTMMSPDGFEIF  179 (241)
T ss_dssp             EECCCCSSGGGGGSSSBCTTTSCSSCHHHHH
T ss_pred             EECCCcCCcchhhhHHHHHHhhcCCcceeHH
Confidence            9999999988877788899999999998554

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.29  E-value=1.2e-11  Score=114.77  Aligned_cols=115  Identities=16%  Similarity=0.244  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC-CCeEEEEecc
Q psy11646         17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN-PKLEFVVANI   92 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~-~~i~~~~~Di   92 (433)
                      ....++..++..   .++.+|||+|||+|..+ ..++...+.  .+++++|+++.+++.|++++   +. .++++.++|+
T Consensus        41 ~~~~~l~~~~~~---~~~~~vLdiG~G~G~~~-~~la~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  114 (233)
T 2gpy_A           41 LGMESLLHLLKM---AAPARILEIGTAIGYSA-IRMAQALPE--ATIVSIERDERRYEEAHKHVKALGLESRIELLFGDA  114 (233)
T ss_dssp             HHHHHHHHHHHH---HCCSEEEEECCTTSHHH-HHHHHHCTT--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCG
T ss_pred             HHHHHHHHHHhc---cCCCEEEEecCCCcHHH-HHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCH
Confidence            344455454443   46789999999999999 455555553  49999999999999999987   22 4699999998


Q ss_pred             cCCccccc-ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         93 ADQNLESI-FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        93 ~~~~l~~~-~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ... ++.. ..++||+|++....+   +...+++++.++|+|||.+++..
T Consensus       115 ~~~-~~~~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          115 LQL-GEKLELYPLFDVLFIDAAKG---QYRRFFDMYSPMVRPGGLILSDN  160 (233)
T ss_dssp             GGS-HHHHTTSCCEEEEEEEGGGS---CHHHHHHHHGGGEEEEEEEEEET
T ss_pred             HHH-HHhcccCCCccEEEECCCHH---HHHHHHHHHHHHcCCCeEEEEEc
Confidence            763 2211 137899999987754   56789999999999999998863

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.29  E-value=8.9e-12  Score=115.32  Aligned_cols=103  Identities=18%  Similarity=0.316  Sum_probs=80.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCC----CCcEEEEEeCCHHHHHHHHhhc---C-----CCCeEEEEecccCCccc
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPK----SVVKLVGLDVSPNMIKHAKNHH---T-----NPKLEFVVANIADQNLE   98 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~----~~~~v~gvDiS~~~l~~A~~~~---~-----~~~i~~~~~Di~~~~l~   98 (433)
                      .+++.+|||||||+|..+. .+++..+.    ...+|+++|+++.+++.|+++.   .     ..++++..+|+... ++
T Consensus        82 ~~~~~~VLdiG~G~G~~~~-~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~  159 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTA-CFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG-YP  159 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHH-HHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC-CG
T ss_pred             CCCCCEEEEECCCccHHHH-HHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccC-CC
Confidence            4678899999999999994 44443221    0138999999999999999876   1     36899999998763 32


Q ss_pred             ccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      .  .++||+|++..+++++.      +++.++|||||++++....
T Consensus       160 ~--~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          160 P--NAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             G--GCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred             c--CCCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEec
Confidence            1  26899999999998764      6789999999999987643

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.28  E-value=1.1e-11  Score=127.43  Aligned_cols=115  Identities=17%  Similarity=0.247  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecc
Q psy11646         17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANI   92 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di   92 (433)
                      ....+.+.+++.+...++.+|||||||+|.++. .+++. +  ..+|+|+|+|+ +++.|+++.   + ..+++++.+|+
T Consensus       142 ~t~~~~~~il~~l~~~~~~~VLDiGcGtG~la~-~la~~-~--~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~  216 (480)
T 3b3j_A          142 RTGTYQRAILQNHTDFKDKIVLDVGCGSGILSF-FAAQA-G--ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKV  216 (480)
T ss_dssp             HHHHHHHHHHHTGGGTTTCEEEEESCSTTHHHH-HHHHT-T--CSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCT
T ss_pred             hHHHHHHHHHHhhhhcCCCEEEEecCcccHHHH-HHHHc-C--CCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECch
Confidence            345556667776665678899999999999984 44432 2  24999999998 999998876   2 26799999999


Q ss_pred             cCCcccccccCcEeEEEEcccccch--hhHHHHHHHHHHhccCCCEEEEE
Q psy11646         93 ADQNLESIFLAKFNKIFSFYCLHWV--QDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        93 ~~~~l~~~~~~~fD~Vis~~~l~~~--~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      .+.+++    ++||+|++..++++.  ++....+.++.++|||||.+++.
T Consensus       217 ~~~~~~----~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          217 EEVSLP----EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             TTCCCS----SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred             hhCccC----CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence            875443    689999998887766  34566788999999999998853

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.28  E-value=1.4e-11  Score=117.53  Aligned_cols=121  Identities=16%  Similarity=0.241  Sum_probs=91.1

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC-CCeEEEEecccCCcccc
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN-PKLEFVVANIADQNLES   99 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~-~~i~~~~~Di~~~~l~~   99 (433)
                      .++..+...++.+|||+|||+|.++..++....+.  .+++++|+|+.+++.|++++   .. .++++..+|+.+. ++.
T Consensus       103 ~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~  179 (277)
T 1o54_A          103 FIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSS--GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDE  179 (277)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTT--CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSC
T ss_pred             HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccC
Confidence            45556667789999999999999995444332333  49999999999999999987   22 5789999998765 333


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhh
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLS  155 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~  155 (433)
                         ++||+|++..     +++..+++++.++|+|||.+++..+...........+.
T Consensus       180 ---~~~D~V~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~  227 (277)
T 1o54_A          180 ---KDVDALFLDV-----PDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQ  227 (277)
T ss_dssp             ---CSEEEEEECC-----SCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred             ---CccCEEEECC-----cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Confidence               6899999843     45668899999999999999998765444434443333

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.28  E-value=2.1e-11  Score=115.09  Aligned_cols=104  Identities=19%  Similarity=0.318  Sum_probs=80.8

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeEE
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNKI  108 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~V  108 (433)
                      .+++.+|||+|||+|.++.. +++.   + .+++|+|+++.+++.|+++.  ....+++.++|+... ++   .++||+|
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~-la~~---g-~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~---~~~fD~V  188 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIA-AEKL---G-GKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LP---FGPFDLL  188 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHH-HHHT---T-CEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GG---GCCEEEE
T ss_pred             cCCCCEEEEecCCCcHHHHH-HHHh---C-CeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-Cc---CCCCCEE
Confidence            36788999999999999844 4432   3 39999999999999999987  211288888887653 33   3789999


Q ss_pred             EEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        109 FSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       109 is~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      +++...++   ...++.++.++|+|||.+++.......
T Consensus       189 v~n~~~~~---~~~~l~~~~~~LkpgG~lils~~~~~~  223 (254)
T 2nxc_A          189 VANLYAEL---HAALAPRYREALVPGGRALLTGILKDR  223 (254)
T ss_dssp             EEECCHHH---HHHHHHHHHHHEEEEEEEEEEEEEGGG
T ss_pred             EECCcHHH---HHHHHHHHHHHcCCCCEEEEEeeccCC
Confidence            99876554   467899999999999999997654443

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.28  E-value=2.7e-11  Score=119.89  Aligned_cols=118  Identities=17%  Similarity=0.109  Sum_probs=90.6

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcc
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNL   97 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l   97 (433)
                      +...++....+.++.+|||+|||+|.++..++....+.  .+++|+|+++.|++.|++++   +..++++.++|+.+.+.
T Consensus       191 la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~--~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~  268 (354)
T 3tma_A          191 LAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPT--SPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPR  268 (354)
T ss_dssp             HHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTT--SCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGG
T ss_pred             HHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCC--ceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcc
Confidence            44455666677889999999999999995554422233  48999999999999999987   22379999999988654


Q ss_pred             cccccCcEeEEEEcccccch--------hhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         98 ESIFLAKFNKIFSFYCLHWV--------QDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~--------~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      +.   +.||+|+++.++...        .....+++++.++|+|||.+++....
T Consensus       269 ~~---~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~  319 (354)
T 3tma_A          269 FF---PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR  319 (354)
T ss_dssp             TC---CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred             cc---CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            43   568999998776432        12367899999999999999987643

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.27  E-value=4.2e-11  Score=118.57  Aligned_cols=113  Identities=21%  Similarity=0.355  Sum_probs=91.8

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCccc
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLE   98 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~   98 (433)
                      ...++..+.+.+..+|||||||+|.++ ..+++..|..  +++..|. |.+++.|+++.   ...++++..+|+.+.+. 
T Consensus       168 ~~~~~~~~~~~~~~~v~DvGgG~G~~~-~~l~~~~p~~--~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~-  242 (353)
T 4a6d_A          168 GRSVLTAFDLSVFPLMCDLGGGAGALA-KECMSLYPGC--KITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL-  242 (353)
T ss_dssp             HHHHHHSSCGGGCSEEEEETCTTSHHH-HHHHHHCSSC--EEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCC-
T ss_pred             HHHHHHhcCcccCCeEEeeCCCCCHHH-HHHHHhCCCc--eeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCC-
Confidence            345666667777889999999999999 4555566654  8899997 88999999887   34789999999876543 


Q ss_pred             ccccCcEeEEEEcccccchhhH--HHHHHHHHHhccCCCEEEEEecc
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQDQ--RQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~d~--~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                          ..+|+|++..+||+++|.  ..+++++++.|+|||++++.+..
T Consensus       243 ----~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~  285 (353)
T 4a6d_A          243 ----PEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESL  285 (353)
T ss_dssp             ----CCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             ----CCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEee
Confidence                347999999999988765  56799999999999999998743

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.27  E-value=1.8e-11  Score=119.36  Aligned_cols=113  Identities=19%  Similarity=0.213  Sum_probs=84.6

Q ss_pred             cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcE
Q psy11646         29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKF  105 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~f  105 (433)
                      +...++.+|||+|||+|..+.. ++...+.. .+|+|+|+|+.+++.++++.   +..++++.++|+...+.   ..++|
T Consensus       114 l~~~~g~~VLDlg~G~G~~t~~-la~~~~~~-~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~---~~~~f  188 (315)
T 1ixk_A          114 LDPKPGEIVADMAAAPGGKTSY-LAQLMRND-GVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE---LNVEF  188 (315)
T ss_dssp             HCCCTTCEEEECCSSCSHHHHH-HHHHTTTC-SEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG---GCCCE
T ss_pred             hCCCCCCEEEEeCCCCCHHHHH-HHHHhCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc---ccccC
Confidence            4557899999999999999944 44444332 49999999999999999987   44579999999877532   23689


Q ss_pred             eEEEEccc------ccchh----------------hHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        106 NKIFSFYC------LHWVQ----------------DQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       106 D~Vis~~~------l~~~~----------------d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      |+|++...      +++.+                ....+++++.++|||||.+++++.+..+
T Consensus       189 D~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~  251 (315)
T 1ixk_A          189 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP  251 (315)
T ss_dssp             EEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG
T ss_pred             CEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCh
Confidence            99998532      32211                1257899999999999999997755433

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.27  E-value=1.7e-11  Score=120.49  Aligned_cols=123  Identities=15%  Similarity=0.289  Sum_probs=87.6

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC--------------CCCeEEEE
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT--------------NPKLEFVV   89 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~--------------~~~i~~~~   89 (433)
                      .++..+...++.+|||+|||+|.++..++....+.+  +++++|+++.+++.|++++.              ..++++..
T Consensus        96 ~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~  173 (336)
T 2b25_A           96 MILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQG--RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  173 (336)
T ss_dssp             HHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTC--EEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCc--eEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence            344455567899999999999999944443223334  99999999999999999762              25799999


Q ss_pred             ecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhh
Q psy11646         90 ANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKL  154 (433)
Q Consensus        90 ~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~  154 (433)
                      +|+.+.. .....++||+|++...     ++..++.++.++|+|||.+++..............+
T Consensus       174 ~d~~~~~-~~~~~~~fD~V~~~~~-----~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l  232 (336)
T 2b25_A          174 KDISGAT-EDIKSLTFDAVALDML-----NPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGI  232 (336)
T ss_dssp             SCTTCCC--------EEEEEECSS-----STTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred             CChHHcc-cccCCCCeeEEEECCC-----CHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHH
Confidence            9998752 1122368999998644     334478999999999999998876655554444433

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.27  E-value=3.8e-12  Score=119.45  Aligned_cols=117  Identities=20%  Similarity=0.223  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEec
Q psy11646         16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVAN   91 (433)
Q Consensus        16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~D   91 (433)
                      +....++..++..   .++.+|||||||+|..+ ..++...+.+ .+|+++|+++.+++.|++++   + ..+++++++|
T Consensus        46 ~~~~~~l~~l~~~---~~~~~VLDiG~G~G~~t-~~la~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd  120 (242)
T 3r3h_A           46 PEQAQFMQMLIRL---TRAKKVLELGTFTGYSA-LAMSLALPDD-GQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGP  120 (242)
T ss_dssp             HHHHHHHHHHHHH---HTCSEEEEEESCCSHHH-HHHHHTSCTT-CEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESC
T ss_pred             HHHHHHHHHHHhh---cCcCEEEEeeCCcCHHH-HHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence            3455566665544   35679999999999999 4555555433 59999999999999999887   2 2589999999


Q ss_pred             ccCCccccc----ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         92 IADQNLESI----FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        92 i~~~~l~~~----~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +.+. ++..    ..++||+|++...   ..+....++++.++|+|||.+++..
T Consensus       121 a~~~-l~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~  170 (242)
T 3r3h_A          121 ALDT-LHSLLNEGGEHQFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDN  170 (242)
T ss_dssp             HHHH-HHHHHHHHCSSCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHH-HHHHhhccCCCCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEEC
Confidence            8653 2211    1378999998765   3456778999999999999998854

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.27  E-value=6.9e-12  Score=120.25  Aligned_cols=111  Identities=15%  Similarity=0.197  Sum_probs=78.8

Q ss_pred             HHHHHHhcCCC-CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEE-EEecccCCcccc
Q psy11646         22 LSQYIDQFKWT-DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEF-VVANIADQNLES   99 (433)
Q Consensus        22 l~~l~~~l~~~-~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~-~~~Di~~~~l~~   99 (433)
                      +..++..+... ++.+|||||||||.++..+++ .   +..+|+|+|+|+.|++.+.++.  +++.. ...++.......
T Consensus        73 l~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~-~---ga~~V~aVDvs~~mL~~a~r~~--~rv~~~~~~ni~~l~~~~  146 (291)
T 3hp7_A           73 LEKALAVFNLSVEDMITIDIGASTGGFTDVMLQ-N---GAKLVYAVDVGTNQLVWKLRQD--DRVRSMEQYNFRYAEPVD  146 (291)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHH-T---TCSEEEEECSSSSCSCHHHHTC--TTEEEECSCCGGGCCGGG
T ss_pred             HHHHHHhcCCCccccEEEecCCCccHHHHHHHh-C---CCCEEEEEECCHHHHHHHHHhC--cccceecccCceecchhh
Confidence            45566666655 577999999999999944444 2   2249999999999999865432  34432 233444432222


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ....+||+|++..+++++   ..++.+++++|+|||.+++..
T Consensus       147 l~~~~fD~v~~d~sf~sl---~~vL~e~~rvLkpGG~lv~lv  185 (291)
T 3hp7_A          147 FTEGLPSFASIDVSFISL---NLILPALAKILVDGGQVVALV  185 (291)
T ss_dssp             CTTCCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEE
T ss_pred             CCCCCCCEEEEEeeHhhH---HHHHHHHHHHcCcCCEEEEEE
Confidence            222459999998888765   678999999999999998863

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.27  E-value=1.2e-11  Score=113.06  Aligned_cols=114  Identities=14%  Similarity=0.146  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecc
Q psy11646         17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANI   92 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di   92 (433)
                      ....++..+...   .++.+|||||||+|..+. .++...+.+ .+++++|+|+.+++.|++++   + ..++++.++|+
T Consensus        43 ~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~-~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  117 (210)
T 3c3p_A           43 QTGRLLYLLARI---KQPQLVVVPGDGLGCASW-WFARAISIS-SRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDP  117 (210)
T ss_dssp             HHHHHHHHHHHH---HCCSEEEEESCGGGHHHH-HHHTTSCTT-CEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCH
T ss_pred             HHHHHHHHHHHh---hCCCEEEEEcCCccHHHH-HHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecH
Confidence            344555554443   356799999999999994 455454433 59999999999999999886   2 24699999998


Q ss_pred             cCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         93 ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        93 ~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .+. ++. ..+ ||+|++...   ..+...+++++.++|+|||.+++..
T Consensus       118 ~~~-~~~-~~~-fD~v~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~  160 (210)
T 3c3p_A          118 LGI-AAG-QRD-IDILFMDCD---VFNGADVLERMNRCLAKNALLIAVN  160 (210)
T ss_dssp             HHH-HTT-CCS-EEEEEEETT---TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred             HHH-hcc-CCC-CCEEEEcCC---hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence            653 121 226 999998743   3456789999999999999988753

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.27  E-value=1.4e-11  Score=115.92  Aligned_cols=117  Identities=14%  Similarity=0.180  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEec
Q psy11646         16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVAN   91 (433)
Q Consensus        16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~D   91 (433)
                      +....++..++..   .++.+|||||||+|..+. .++..++.+ .+++++|+++.+++.|++++   + ..+++++++|
T Consensus        65 ~~~~~ll~~l~~~---~~~~~VLeiG~G~G~~~~-~la~~~~~~-~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gd  139 (247)
T 1sui_A           65 ADEGQFLSMLLKL---INAKNTMEIGVYTGYSLL-ATALAIPED-GKILAMDINKENYELGLPVIKKAGVDHKIDFREGP  139 (247)
T ss_dssp             HHHHHHHHHHHHH---TTCCEEEEECCGGGHHHH-HHHHHSCTT-CEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESC
T ss_pred             HHHHHHHHHHHHh---hCcCEEEEeCCCcCHHHH-HHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECC
Confidence            3455566655554   356799999999999994 455555533 59999999999999999987   2 2479999999


Q ss_pred             ccCCccccc-----ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         92 IADQNLESI-----FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        92 i~~~~l~~~-----~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +.+. ++..     ..++||+|++...   ..+....++++.++|+|||.+++..
T Consensus       140 a~~~-l~~l~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          140 ALPV-LDEMIKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             HHHH-HHHHHHSGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             HHHH-HHHHHhccCCCCCEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEec
Confidence            8653 2211     1378999998754   3456788999999999999988753

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.26  E-value=3.3e-11  Score=112.46  Aligned_cols=119  Identities=18%  Similarity=0.285  Sum_probs=90.7

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCcccc
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNLES   99 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l~~   99 (433)
                      .++..+...++.+|||+|||+|.++..++. .    ..+++++|+++.+++.|+++.   . ..++++...|+.+...+.
T Consensus        82 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~-~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  156 (248)
T 2yvl_A           82 YIALKLNLNKEKRVLEFGTGSGALLAVLSE-V----AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPE  156 (248)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHH-H----SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCT
T ss_pred             HHHHhcCCCCCCEEEEeCCCccHHHHHHHH-h----CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCC
Confidence            455556667899999999999999955544 3    259999999999999999986   2 267899999987642132


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhh
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLS  155 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~  155 (433)
                         ++||+|++..     +++..+++++.++|+|||.+++..+......+....+.
T Consensus       157 ---~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~  204 (248)
T 2yvl_A          157 ---GIFHAAFVDV-----REPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIE  204 (248)
T ss_dssp             ---TCBSEEEECS-----SCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHST
T ss_pred             ---CcccEEEECC-----cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Confidence               6899999843     35667899999999999999998765544444444443

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.26  E-value=1.3e-11  Score=115.23  Aligned_cols=116  Identities=11%  Similarity=0.128  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhccc----CCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEec
Q psy11646         16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPN----LPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVAN   91 (433)
Q Consensus        16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~----~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~D   91 (433)
                      +....++..++...   ++.+|||||||+|..+ ..+++.    .+.  .+|+|+|+|+.|++.|+..  ..+++++++|
T Consensus        67 p~~~~~l~~~l~~~---~~~~VLDiG~GtG~~t-~~la~~~~~~~~~--~~V~gvD~s~~~l~~a~~~--~~~v~~~~gD  138 (236)
T 2bm8_A           67 PDTQAVYHDMLWEL---RPRTIVELGVYNGGSL-AWFRDLTKIMGID--CQVIGIDRDLSRCQIPASD--MENITLHQGD  138 (236)
T ss_dssp             HHHHHHHHHHHHHH---CCSEEEEECCTTSHHH-HHHHHHHHHTTCC--CEEEEEESCCTTCCCCGGG--CTTEEEEECC
T ss_pred             HHHHHHHHHHHHhc---CCCEEEEEeCCCCHHH-HHHHHhhhhcCCC--CEEEEEeCChHHHHHHhcc--CCceEEEECc
Confidence            55556666666553   4679999999999999 455544    333  4999999999999988743  2689999999


Q ss_pred             ccCCc-ccccccCcEeEEEEcccccchhhHHHHHHHHHH-hccCCCEEEEEec
Q psy11646         92 IADQN-LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYN-LLMPGGEVLLLLN  142 (433)
Q Consensus        92 i~~~~-l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~-~LkpGG~lll~~~  142 (433)
                      +.+.. ++.....+||+|++... |  .+...++.++.+ +|||||++++...
T Consensus       139 ~~~~~~l~~~~~~~fD~I~~d~~-~--~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          139 CSDLTTFEHLREMAHPLIFIDNA-H--ANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             SSCSGGGGGGSSSCSSEEEEESS-C--SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             chhHHHHHhhccCCCCEEEECCc-h--HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            98631 11111247999998765 3  267789999997 9999999998643

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.25  E-value=5.6e-11  Score=116.12  Aligned_cols=105  Identities=17%  Similarity=0.226  Sum_probs=79.4

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC-------CCCeEEEEecccCCcccccccCc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT-------NPKLEFVVANIADQNLESIFLAK  104 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~-------~~~i~~~~~Di~~~~l~~~~~~~  104 (433)
                      .++.+|||||||+|..+..++ +..+.  .+++++|+|+.+++.|++++.       .+++++.++|+.+. ++ ...++
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~-~~~~~--~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~-l~-~~~~~  189 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELC-KYKSV--ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF-LE-NVTNT  189 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHT-TCTTC--CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH-HH-HCCSC
T ss_pred             CCCCEEEEEcCCccHHHHHHH-HcCCC--CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHH-Hh-hcCCC
Confidence            456899999999999995444 43332  599999999999999999872       36899999998653 11 12378


Q ss_pred             EeEEEEcccccc--hhhH--HHHHHHHHHhccCCCEEEEEe
Q psy11646        105 FNKIFSFYCLHW--VQDQ--RQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       105 fD~Vis~~~l~~--~~d~--~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ||+|++...-++  ....  ..+++++.++|+|||.+++..
T Consensus       190 fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  230 (321)
T 2pt6_A          190 YDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  230 (321)
T ss_dssp             EEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            999998763222  1222  688999999999999998853

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.25  E-value=1.1e-11  Score=119.19  Aligned_cols=118  Identities=15%  Similarity=0.206  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC-CCeEEEEe
Q psy11646         15 QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN-PKLEFVVA   90 (433)
Q Consensus        15 ~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~-~~i~~~~~   90 (433)
                      ++.++.+++.+++.+...++.+|||+|||+|..+..+ +.. +.  .+++|+|+|+.+++.|+++.   +. .++++.++
T Consensus       105 r~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~l-a~~-~~--~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~  180 (284)
T 1nv8_A          105 RPETEELVELALELIRKYGIKTVADIGTGSGAIGVSV-AKF-SD--AIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG  180 (284)
T ss_dssp             CTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHH-HHH-SS--CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEES
T ss_pred             ChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHH-HHC-CC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence            4455666666666554346779999999999999544 444 43  49999999999999999987   22 35999999


Q ss_pred             cccCCcccccccCcE---eEEEEcccccchh-------------------hHHHHHHHHH-HhccCCCEEEEEe
Q psy11646         91 NIADQNLESIFLAKF---NKIFSFYCLHWVQ-------------------DQRQAISNIY-NLLMPGGEVLLLL  141 (433)
Q Consensus        91 Di~~~~l~~~~~~~f---D~Vis~~~l~~~~-------------------d~~~~l~~i~-~~LkpGG~lll~~  141 (433)
                      |+.+. ++    ++|   |+|+++.......                   +...+++++. +.|+|||.+++..
T Consensus       181 D~~~~-~~----~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~  249 (284)
T 1nv8_A          181 EFLEP-FK----EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI  249 (284)
T ss_dssp             STTGG-GG----GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred             cchhh-cc----cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence            98763 32    578   9999985443211                   1226789999 9999999998753

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.25  E-value=9e-11  Score=112.63  Aligned_cols=107  Identities=17%  Similarity=0.189  Sum_probs=81.3

Q ss_pred             CCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC-------CCCeEEEEecccCCccccccc
Q psy11646         30 KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT-------NPKLEFVVANIADQNLESIFL  102 (433)
Q Consensus        30 ~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~-------~~~i~~~~~Di~~~~l~~~~~  102 (433)
                      .++++.+|||||||+|..+..+ ++..+.  .+++++|+++.+++.|++++.       .+++++.++|+... ++ ...
T Consensus        75 ~~~~~~~VLdiG~G~G~~~~~l-~~~~~~--~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~-l~-~~~  149 (283)
T 2i7c_A           75 VSKEPKNVLVVGGGDGGIIREL-CKYKSV--ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF-LE-NVT  149 (283)
T ss_dssp             TSSSCCEEEEEECTTSHHHHHH-TTCTTC--CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH-HH-HCC
T ss_pred             cCCCCCeEEEEeCCcCHHHHHH-HHcCCC--CEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHH-HH-hCC
Confidence            3456789999999999999544 444332  499999999999999999872       46899999998653 11 114


Q ss_pred             CcEeEEEEcccccchh--hH--HHHHHHHHHhccCCCEEEEEe
Q psy11646        103 AKFNKIFSFYCLHWVQ--DQ--RQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~~--d~--~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ++||+|++....++.+  ..  ..++++++++|+|||.+++..
T Consensus       150 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          150 NTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             SCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence            7899999965443322  22  688999999999999998763

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.25  E-value=3.4e-11  Score=112.97  Aligned_cols=106  Identities=18%  Similarity=0.326  Sum_probs=79.0

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-----------CCCCeEEEEecccCCcccc-
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-----------TNPKLEFVVANIADQNLES-   99 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-----------~~~~i~~~~~Di~~~~l~~-   99 (433)
                      +++.+|||||||+|.++ ..++...+.  .+++|+|+|+.+++.|++++           ...++.++++|+.+. ++. 
T Consensus        48 ~~~~~vLDiGcG~G~~~-~~la~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~-l~~~  123 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLM-IDLSPAFPE--DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF-LPNF  123 (246)
T ss_dssp             SCCEEEEEETCTTSHHH-HHHHHHSTT--SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSC-GGGT
T ss_pred             CCCCEEEEEcCCCCHHH-HHHHHhCCC--CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHH-HHHh
Confidence            36779999999999999 445555444  38999999999999998764           225899999998763 222 


Q ss_pred             cccCcEeEEEEcccccchhh--------HHHHHHHHHHhccCCCEEEEEe
Q psy11646        100 IFLAKFNKIFSFYCLHWVQD--------QRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d--------~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ...+++|.|+....-.|...        ...++.++.++|+|||.+++..
T Consensus       124 ~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          124 FEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT  173 (246)
T ss_dssp             SCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence            33478999987654333211        1478999999999999999864

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.25  E-value=1.4e-11  Score=122.08  Aligned_cols=99  Identities=24%  Similarity=0.403  Sum_probs=81.9

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSF  111 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~  111 (433)
                      .++.+|||||||+|.++ ..+++..+..  +++++|+ +.+++.|++.   .++++..+|+.+ +++     .||+|++.
T Consensus       192 ~~~~~vlDvG~G~G~~~-~~l~~~~p~~--~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~~-----~~D~v~~~  258 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVT-KLIHEIFPHL--KCTVFDQ-PQVVGNLTGN---ENLNFVGGDMFK-SIP-----SADAVLLK  258 (358)
T ss_dssp             HTCSEEEEETCTTSHHH-HHHHHHCTTS--EEEEEEC-HHHHSSCCCC---SSEEEEECCTTT-CCC-----CCSEEEEE
T ss_pred             cCCCEEEEECCCcCHHH-HHHHHHCCCC--eEEEecc-HHHHhhcccC---CCcEEEeCccCC-CCC-----CceEEEEc
Confidence            46789999999999999 4555555543  8999999 7898877753   569999999876 443     49999999


Q ss_pred             ccccchhhHH--HHHHHHHHhccC---CCEEEEEecc
Q psy11646        112 YCLHWVQDQR--QAISNIYNLLMP---GGEVLLLLNA  143 (433)
Q Consensus       112 ~~l~~~~d~~--~~l~~i~~~Lkp---GG~lll~~~~  143 (433)
                      .++|++++..  .++++++++|+|   ||++++.+..
T Consensus       259 ~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  295 (358)
T 1zg3_A          259 WVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDIS  295 (358)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred             ccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence            9999998866  999999999999   9999997643

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.25  E-value=3.6e-11  Score=114.74  Aligned_cols=102  Identities=15%  Similarity=0.147  Sum_probs=82.1

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeE
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      ..++.+|||+|||+|.++. .+++..+.  .+|+|+|+|+.+++.|++++   +..++.++++|+.+.+.    .++||+
T Consensus       117 ~~~~~~VLDlgcG~G~~s~-~la~~~~~--~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~----~~~~D~  189 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTI-PLAKYSKP--KLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL----KDVADR  189 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHH-HHHHHTCC--SEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC----TTCEEE
T ss_pred             cCCCCEEEEecCcCCHHHH-HHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc----cCCceE
Confidence            4678899999999999994 44444333  49999999999999999987   33578999999987522    378999


Q ss_pred             EEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646        108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      |++..+.    +....+.++.+.|+|||.+++....
T Consensus       190 Vi~d~p~----~~~~~l~~~~~~LkpgG~l~~s~~~  221 (272)
T 3a27_A          190 VIMGYVH----KTHKFLDKTFEFLKDRGVIHYHETV  221 (272)
T ss_dssp             EEECCCS----SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEECCcc----cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence            9998775    4566888999999999999987543

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.24  E-value=2e-11  Score=116.63  Aligned_cols=115  Identities=17%  Similarity=0.145  Sum_probs=85.5

Q ss_pred             cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccc-cccCc
Q psy11646         29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLES-IFLAK  104 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~-~~~~~  104 (433)
                      +...++.+|||+|||+|..+.. ++...+.. .+|+++|+|+.+++.++++.   +..++++.++|+...+... ...++
T Consensus        79 l~~~~g~~VLDlgaG~G~~t~~-la~~~~~~-~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~  156 (274)
T 3ajd_A           79 LNPREDDFILDMCAAPGGKTTH-LAQLMKNK-GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIF  156 (274)
T ss_dssp             HCCCTTCEEEETTCTTCHHHHH-HHHHTTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCC
T ss_pred             hCCCCcCEEEEeCCCccHHHHH-HHHHcCCC-CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhcccc
Confidence            3457889999999999999944 44444332 49999999999999999987   3458999999987643210 01378


Q ss_pred             EeEEEEcccccc------------------hhhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646        105 FNKIFSFYCLHW------------------VQDQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus       105 fD~Vis~~~l~~------------------~~d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      ||+|++......                  ......+++++.++|||||.+++++.+..
T Consensus       157 fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~  215 (274)
T 3ajd_A          157 FDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSME  215 (274)
T ss_dssp             EEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred             CCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence            999999743321                  13457889999999999999999875543

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.24  E-value=4.5e-12  Score=112.39  Aligned_cols=94  Identities=16%  Similarity=0.122  Sum_probs=78.6

Q ss_pred             hcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeE
Q psy11646         28 QFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        28 ~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      .+..++|.+|||||||.                   +++|+|+.|++.|+++.. .++++.++|+++.++....+++||+
T Consensus         7 ~~g~~~g~~vL~~~~g~-------------------v~vD~s~~ml~~a~~~~~-~~~~~~~~d~~~~~~~~~~~~~fD~   66 (176)
T 2ld4_A            7 DFGISAGQFVAVVWDKS-------------------SPVEALKGLVDKLQALTG-NEGRVSVENIKQLLQSAHKESSFDI   66 (176)
T ss_dssp             TTTCCTTSEEEEEECTT-------------------SCHHHHHHHHHHHHHHTT-TTSEEEEEEGGGGGGGCCCSSCEEE
T ss_pred             ccCCCCCCEEEEecCCc-------------------eeeeCCHHHHHHHHHhcc-cCcEEEEechhcCccccCCCCCEeE
Confidence            34567899999999985                   128999999999999863 2599999999886541123489999


Q ss_pred             EEEcccccch-hhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        108 IFSFYCLHWV-QDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       108 Vis~~~l~~~-~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |+++.++||+ ++...++++++++|||||++++..
T Consensus        67 V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~  101 (176)
T 2ld4_A           67 ILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKE  101 (176)
T ss_dssp             EEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEc
Confidence            9999999999 899999999999999999999853

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.24  E-value=7.6e-11  Score=114.85  Aligned_cols=104  Identities=20%  Similarity=0.238  Sum_probs=81.0

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC--------CCCeEEEEecccCCcccccccC
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT--------NPKLEFVVANIADQNLESIFLA  103 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~--------~~~i~~~~~Di~~~~l~~~~~~  103 (433)
                      +++.+|||||||+|..+..+ ++..+.  .+++++|+++.+++.|++++.        .++++++.+|+... ++ ...+
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l-~~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~-l~-~~~~  150 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREV-LKHPTV--EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY-LE-RTEE  150 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHH-TTSTTC--CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH-HH-HCCC
T ss_pred             CCCCeEEEEcCCcCHHHHHH-HhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH-HH-hcCC
Confidence            45689999999999999544 444332  499999999999999998861        46899999998763 21 1237


Q ss_pred             cEeEEEEcccccc---hh--h--HHHHHHHHHHhccCCCEEEEE
Q psy11646        104 KFNKIFSFYCLHW---VQ--D--QRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       104 ~fD~Vis~~~l~~---~~--d--~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +||+|++....++   .+  .  ...++++++++|+|||.+++.
T Consensus       151 ~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  194 (314)
T 1uir_A          151 RYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (314)
T ss_dssp             CEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             CccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence            8999999877665   21  1  368899999999999999875

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.24  E-value=3.4e-11  Score=112.48  Aligned_cols=117  Identities=15%  Similarity=0.144  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC-CCeEEEEec
Q psy11646         16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN-PKLEFVVAN   91 (433)
Q Consensus        16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~-~~i~~~~~D   91 (433)
                      +....++..++..   .++.+|||||||+|..+. .++...+.+ .+++++|+++.+++.|++++   +. .+++++++|
T Consensus        56 ~~~~~~l~~l~~~---~~~~~VLeiG~G~G~~~~-~la~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd  130 (237)
T 3c3y_A           56 PLAGQLMSFVLKL---VNAKKTIEVGVFTGYSLL-LTALSIPDD-GKITAIDFDREAYEIGLPFIRKAGVEHKINFIESD  130 (237)
T ss_dssp             HHHHHHHHHHHHH---TTCCEEEEECCTTSHHHH-HHHHHSCTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESC
T ss_pred             HHHHHHHHHHHHh---hCCCEEEEeCCCCCHHHH-HHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence            3445566665554   456799999999999994 445555533 59999999999999999887   22 469999999


Q ss_pred             ccCCccccc-----ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         92 IADQNLESI-----FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        92 i~~~~l~~~-----~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +.+. ++..     ..++||+|++...   ..+....++++.++|+|||.+++..
T Consensus       131 a~~~-l~~l~~~~~~~~~fD~I~~d~~---~~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          131 AMLA-LDNLLQGQESEGSYDFGFVDAD---KPNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             HHHH-HHHHHHSTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHH-HHHHHhccCCCCCcCEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEec
Confidence            8653 2211     1378999998643   3456788999999999999988753

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.23  E-value=4.1e-11  Score=110.65  Aligned_cols=115  Identities=18%  Similarity=0.241  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEeccc
Q psy11646         18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIA   93 (433)
Q Consensus        18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~   93 (433)
                      ...++..+...   .++.+|||||||+|..+. .++...+.+ .+++++|+++.+++.|++++   + ..++++.++|+.
T Consensus        57 ~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~-~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~  131 (229)
T 2avd_A           57 QAQLLANLARL---IQAKKALDLGTFTGYSAL-ALALALPAD-GRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPAL  131 (229)
T ss_dssp             HHHHHHHHHHH---TTCCEEEEECCTTSHHHH-HHHTTSCTT-CEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred             HHHHHHHHHHh---cCCCEEEEEcCCccHHHH-HHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHH
Confidence            33455444443   467899999999999994 455444433 59999999999999999987   2 258999999986


Q ss_pred             CCccccccc----CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         94 DQNLESIFL----AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        94 ~~~l~~~~~----~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +. ++....    ++||+|++...   ..+....++++.++|+|||.+++..
T Consensus       132 ~~-~~~~~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~  179 (229)
T 2avd_A          132 ET-LDELLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLR  179 (229)
T ss_dssp             HH-HHHHHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HH-HHHHHhcCCCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence            53 222111    68999999765   2345778999999999999988854

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.23  E-value=3.7e-11  Score=111.76  Aligned_cols=117  Identities=22%  Similarity=0.250  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEec
Q psy11646         16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVAN   91 (433)
Q Consensus        16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~D   91 (433)
                      +....++..++..   .++.+|||||||+|..+ ..++...+.+ .+++++|+++.+++.|++++   + ..++++.++|
T Consensus        58 ~~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~-~~la~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d  132 (232)
T 3cbg_A           58 PEQAQFLGLLISL---TGAKQVLEIGVFRGYSA-LAMALQLPPD-GQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGP  132 (232)
T ss_dssp             HHHHHHHHHHHHH---HTCCEEEEECCTTSHHH-HHHHTTSCTT-CEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC
T ss_pred             HHHHHHHHHHHHh---cCCCEEEEecCCCCHHH-HHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence            3444555555543   35679999999999999 4555555433 59999999999999999886   2 2469999999


Q ss_pred             ccCCcccccc--c--CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         92 IADQNLESIF--L--AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        92 i~~~~l~~~~--~--~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +.+. ++...  .  ++||+|++...   ..+....++++.++|+|||.+++..
T Consensus       133 ~~~~-l~~l~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~  182 (232)
T 3cbg_A          133 ALAT-LEQLTQGKPLPEFDLIFIDAD---KRNYPRYYEIGLNLLRRGGLMVIDN  182 (232)
T ss_dssp             HHHH-HHHHHTSSSCCCEEEEEECSC---GGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred             HHHH-HHHHHhcCCCCCcCEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            7542 22211  2  68999998765   3456788999999999999998864

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.22  E-value=7.9e-11  Score=112.66  Aligned_cols=100  Identities=13%  Similarity=0.157  Sum_probs=79.9

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCcccccccCcEeE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      +++.+|||+|||+|.++..++. ...   .+|+|+|+|+.+++.|++++   + ..++++.++|+.+...    .++||+
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~-~~~---~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~----~~~fD~  195 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAV-YGK---AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG----ENIADR  195 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHH-HTC---CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC----CSCEEE
T ss_pred             CCCCEEEEecccCCHHHHHHHH-hCC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc----cCCccE
Confidence            5789999999999999954443 321   27999999999999999987   2 2358999999987643    378999


Q ss_pred             EEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646        108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      |++....    +...++.++.++|+|||.+++....
T Consensus       196 Vi~~~p~----~~~~~l~~~~~~LkpgG~l~~~~~~  227 (278)
T 2frn_A          196 ILMGYVV----RTHEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             EEECCCS----SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEECCch----hHHHHHHHHHHHCCCCeEEEEEEee
Confidence            9997653    3356788999999999999997655

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.22  E-value=3.5e-11  Score=112.22  Aligned_cols=115  Identities=17%  Similarity=0.201  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC-CCeEEEEeccc
Q psy11646         18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN-PKLEFVVANIA   93 (433)
Q Consensus        18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~-~~i~~~~~Di~   93 (433)
                      ...++..++..   .++.+|||||||+|..+ ..+++..+.+ .+++++|+++.+++.|++++   +. .++++.++|+.
T Consensus        48 ~~~~l~~l~~~---~~~~~VLdiG~G~G~~~-~~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~  122 (239)
T 2hnk_A           48 EGQFLNILTKI---SGAKRIIEIGTFTGYSS-LCFASALPED-GKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSAL  122 (239)
T ss_dssp             HHHHHHHHHHH---HTCSEEEEECCTTCHHH-HHHHHHSCTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred             HHHHHHHHHHh---hCcCEEEEEeCCCCHHH-HHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHH
Confidence            33444444433   46789999999999999 4555555433 59999999999999999986   22 35899999976


Q ss_pred             CCccccc-------------c-c-CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         94 DQNLESI-------------F-L-AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        94 ~~~l~~~-------------~-~-~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +. ++..             . . ++||+|++....   ++....++++.++|+|||.+++..
T Consensus       123 ~~-~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          123 ET-LQVLIDSKSAPSWASDFAFGPSSIDLFFLDADK---ENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             HH-HHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HH-HHHHHhhcccccccccccCCCCCcCEEEEeCCH---HHHHHHHHHHHHHcCCCeEEEEEc
Confidence            52 1211             1 1 689999998653   455688999999999999999864

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.22  E-value=6e-11  Score=116.42  Aligned_cols=106  Identities=14%  Similarity=0.259  Sum_probs=80.5

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC-------CCCeEEEEecccCCcccccccC
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT-------NPKLEFVVANIADQNLESIFLA  103 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~-------~~~i~~~~~Di~~~~l~~~~~~  103 (433)
                      ..++.+|||||||+|..+.. +++..+.  .+|+++|+|+.+++.|++++.       .++++++++|+... ++....+
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~-la~~~~~--~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~-l~~~~~~  193 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLRE-VARHASI--EQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF-LKNAAEG  193 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHH-HTTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH-HHTSCTT
T ss_pred             CCCCCEEEEECCCccHHHHH-HHHcCCC--CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH-HHhccCC
Confidence            45678999999999999944 4444333  499999999999999999871       36899999998653 2211237


Q ss_pred             cEeEEEEccc--ccchhh--HHHHHHHHHHhccCCCEEEEE
Q psy11646        104 KFNKIFSFYC--LHWVQD--QRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       104 ~fD~Vis~~~--l~~~~d--~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +||+|++...  .+...+  ...+++++.++|+|||.+++.
T Consensus       194 ~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          194 SYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             CEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            8999999654  222222  368999999999999999885

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.21  E-value=1.4e-10  Score=111.97  Aligned_cols=105  Identities=21%  Similarity=0.206  Sum_probs=77.2

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC-------CCCeEEEEecccCCcccccccCc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT-------NPKLEFVVANIADQNLESIFLAK  104 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~-------~~~i~~~~~Di~~~~l~~~~~~~  104 (433)
                      ..+.+|||||||+|..+..+ ++..+.  .+++++|+++.+++.|++++.       .++++++++|+... ++ ...++
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l-~~~~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~-l~-~~~~~  163 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREV-LKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEY-VR-KFKNE  163 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHH-TTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-GG-GCSSC
T ss_pred             CCCCEEEEEcCCcCHHHHHH-HhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH-Hh-hCCCC
Confidence            45689999999999999544 443332  499999999999999999861       46899999997653 11 12378


Q ss_pred             EeEEEEcccccchh-----hHHHHHHHHHHhccCCCEEEEEe
Q psy11646        105 FNKIFSFYCLHWVQ-----DQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       105 fD~Vis~~~l~~~~-----d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ||+|++....++..     ....++++++++|+|||.+++..
T Consensus       164 fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  205 (296)
T 1inl_A          164 FDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  205 (296)
T ss_dssp             EEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            99999865433221     12678999999999999998853

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.21  E-value=1.5e-10  Score=110.58  Aligned_cols=105  Identities=18%  Similarity=0.192  Sum_probs=79.5

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-------CCCCeEEEEecccCCcccccccCc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-------TNPKLEFVVANIADQNLESIFLAK  104 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-------~~~~i~~~~~Di~~~~l~~~~~~~  104 (433)
                      ..+.+|||||||+|..+..++ +..+.  .+++++|+++.+++.|++++       ..++++++.+|+... ++. ..++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~-~~~~~--~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~-l~~-~~~~  148 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREIL-KHPSV--KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH-IAK-SENQ  148 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHT-TCTTC--SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH-HHT-CCSC
T ss_pred             CCCCEEEEECCchHHHHHHHH-hCCCC--ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH-Hhh-CCCC
Confidence            457899999999999995444 33222  49999999999999999976       246899999998653 221 2378


Q ss_pred             EeEEEEcccccchhh----HHHHHHHHHHhccCCCEEEEEe
Q psy11646        105 FNKIFSFYCLHWVQD----QRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       105 fD~Vis~~~l~~~~d----~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ||+|++....++.+.    ...++++++++|+|||.+++..
T Consensus       149 fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~  189 (275)
T 1iy9_A          149 YDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (275)
T ss_dssp             EEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            999999665433211    2578999999999999988753

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.20  E-value=4.5e-11  Score=118.81  Aligned_cols=99  Identities=18%  Similarity=0.270  Sum_probs=78.0

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      .++.+|||||||+|.++ .++++.   +..+|+|+|.|+ |++.|++..    ...+|+++.+|+++..++    ++||+
T Consensus        82 ~~~k~VLDvG~GtGiLs-~~Aa~a---GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp----e~~Dv  152 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILS-IFCAQA---GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP----EQVDA  152 (376)
T ss_dssp             HTTCEEEEETCTTSHHH-HHHHHT---TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS----SCEEE
T ss_pred             cCCCEEEEeCCCccHHH-HHHHHh---CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC----ccccE
Confidence            36889999999999988 454432   325899999996 888888876    346799999999987665    78999


Q ss_pred             EEEc---ccccchhhHHHHHHHHHHhccCCCEEEE
Q psy11646        108 IFSF---YCLHWVQDQRQAISNIYNLLMPGGEVLL  139 (433)
Q Consensus       108 Vis~---~~l~~~~d~~~~l~~i~~~LkpGG~lll  139 (433)
                      |++-   ..+.+-.....++....++|+|||.++-
T Consensus       153 ivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          153 IVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             EECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             EEeecccccccccchhhhHHHHHHhhCCCCceECC
Confidence            9984   3444445677888888999999998764

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.19  E-value=2.2e-10  Score=103.54  Aligned_cols=101  Identities=21%  Similarity=0.281  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcc
Q psy11646         18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL   97 (433)
Q Consensus        18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l   97 (433)
                      +..++..+. .....++.+|||+|||+|.++..+ +..   +..+++|+|+|+.+++.|+++..  ++++.++|+.+.  
T Consensus        37 ~~~l~~~~~-~~~~~~~~~vlD~gcG~G~~~~~l-~~~---~~~~v~~vD~~~~~~~~a~~~~~--~~~~~~~d~~~~--  107 (200)
T 1ne2_A           37 AAYFLIEIY-NDGNIGGRSVIDAGTGNGILACGS-YLL---GAESVTAFDIDPDAIETAKRNCG--GVNFMVADVSEI--  107 (200)
T ss_dssp             HHHHHHHHH-HHTSSBTSEEEEETCTTCHHHHHH-HHT---TBSEEEEEESCHHHHHHHHHHCT--TSEEEECCGGGC--
T ss_pred             HHHHHHHHH-hcCCCCCCEEEEEeCCccHHHHHH-HHc---CCCEEEEEECCHHHHHHHHHhcC--CCEEEECcHHHC--
Confidence            444443333 234457889999999999998444 432   22489999999999999999874  899999998874  


Q ss_pred             cccccCcEeEEEEcccccchhh--HHHHHHHHHHhc
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQD--QRQAISNIYNLL  131 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d--~~~~l~~i~~~L  131 (433)
                      +    ++||+|+++.++|+..+  ....++++.+.+
T Consensus       108 ~----~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~  139 (200)
T 1ne2_A          108 S----GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS  139 (200)
T ss_dssp             C----CCEEEEEECCCC-------CHHHHHHHHHHE
T ss_pred             C----CCeeEEEECCCchhccCchhHHHHHHHHHhc
Confidence            2    68999999999998864  346788888888

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.19  E-value=4.8e-11  Score=111.15  Aligned_cols=161  Identities=16%  Similarity=0.253  Sum_probs=91.8

Q ss_pred             HHHHHHhcCCC-CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEE-EecccCCcccc
Q psy11646         22 LSQYIDQFKWT-DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFV-VANIADQNLES   99 (433)
Q Consensus        22 l~~l~~~l~~~-~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~-~~Di~~~~l~~   99 (433)
                      ++.++..+... ++.+|||||||+|.++..++. .   +..+|+|+|+|+.|++.|+++.  .++... ..++.......
T Consensus        25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~-~---g~~~V~gvDis~~ml~~a~~~~--~~~~~~~~~~~~~~~~~~   98 (232)
T 3opn_A           25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQ-N---GAKLVYALDVGTNQLAWKIRSD--ERVVVMEQFNFRNAVLAD   98 (232)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHH-T---TCSEEEEECSSCCCCCHHHHTC--TTEEEECSCCGGGCCGGG
T ss_pred             HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHh-c---CCCEEEEEcCCHHHHHHHHHhC--ccccccccceEEEeCHhH
Confidence            44556666554 477999999999999954443 2   2249999999999999988764  222211 11221111011


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeeccccCceE
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQ  179 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~pl~gv~~  179 (433)
                      .....||.+.+..++..+   ..++++++++|||||.+++..   .|.++        ..|..+...         |+  
T Consensus        99 ~~~~~~d~~~~D~v~~~l---~~~l~~i~rvLkpgG~lv~~~---~p~~e--------~~~~~~~~~---------G~--  153 (232)
T 3opn_A           99 FEQGRPSFTSIDVSFISL---DLILPPLYEILEKNGEVAALI---KPQFE--------AGREQVGKN---------GI--  153 (232)
T ss_dssp             CCSCCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEE---CHHHH--------SCHHHHC-C---------CC--
T ss_pred             cCcCCCCEEEEEEEhhhH---HHHHHHHHHhccCCCEEEEEE---Ccccc--------cCHHHhCcC---------Ce--
Confidence            111124444444444333   678999999999999998864   23222        112111100         00  


Q ss_pred             EEccccccchHHHHHHhcCCCCCeEEEecCCCCC
Q psy11646        180 VQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDV  213 (433)
Q Consensus       180 iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~  213 (433)
                      +........+.+++...+...++.++-.+..|-.
T Consensus       154 ~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~  187 (232)
T 3opn_A          154 IRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIK  187 (232)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSC
T ss_pred             ecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCC
Confidence            0000111236677778888888888777766643

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.18  E-value=3.8e-11  Score=126.34  Aligned_cols=104  Identities=19%  Similarity=0.305  Sum_probs=80.7

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-C--CCCeEEEEecccCCcccccccCcEeEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-T--NPKLEFVVANIADQNLESIFLAKFNKI  108 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~--~~~i~~~~~Di~~~~l~~~~~~~fD~V  108 (433)
                      ..+.+|||||||.|.++ ..+++   .| .+|+|+|.|+.+++.|+.++ .  ..+++|.++++++.. ....+++||+|
T Consensus        65 ~~~~~vLDvGCG~G~~~-~~la~---~g-a~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~fD~v  138 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFS-LSLAS---KG-ATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVI-AALEEGEFDLA  138 (569)
T ss_dssp             TSCCEEEEETCTTSHHH-HHHHH---TT-CEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHH-HHCCTTSCSEE
T ss_pred             CCCCeEEEECCCCcHHH-HHHHh---CC-CEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHh-hhccCCCccEE
Confidence            35789999999999999 55553   23 69999999999999999887 2  247899999998741 11234789999


Q ss_pred             EEcccccchhhHHH--HHHHHHHhccCCCEEEEEe
Q psy11646        109 FSFYCLHWVQDQRQ--AISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       109 is~~~l~~~~d~~~--~l~~i~~~LkpGG~lll~~  141 (433)
                      +|..++||++++..  .+..+.+.|+++|..++..
T Consensus       139 ~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~  173 (569)
T 4azs_A          139 IGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILE  173 (569)
T ss_dssp             EEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred             EECcchhcCCCHHHHHHHHHHHHHhccccceeeEE
Confidence            99999999988653  3556777788887666543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.17  E-value=9.4e-11  Score=113.64  Aligned_cols=105  Identities=13%  Similarity=0.178  Sum_probs=80.2

Q ss_pred             CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC---CCCeEEEEecccCCcccccccCcEeEEEE
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT---NPKLEFVVANIADQNLESIFLAKFNKIFS  110 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~---~~~i~~~~~Di~~~~l~~~~~~~fD~Vis  110 (433)
                      ..+|||||||+|..+ ..+++..+..  +++++|+++.+++.|++++.   .++++++++|.... +.....++||+|++
T Consensus        90 ~~rVLdIG~G~G~la-~~la~~~p~~--~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~-l~~~~~~~fDvIi~  165 (317)
T 3gjy_A           90 KLRITHLGGGACTMA-RYFADVYPQS--RNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMV-AESFTPASRDVIIR  165 (317)
T ss_dssp             GCEEEEESCGGGHHH-HHHHHHSTTC--EEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHH-HHTCCTTCEEEEEE
T ss_pred             CCEEEEEECCcCHHH-HHHHHHCCCc--EEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHH-HhhccCCCCCEEEE
Confidence            359999999999999 4555444543  89999999999999999982   46899999998764 22222378999999


Q ss_pred             cccccch-h-h--HHHHHHHHHHhccCCCEEEEEec
Q psy11646        111 FYCLHWV-Q-D--QRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       111 ~~~l~~~-~-d--~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ....++. . .  ...++++++++|+|||.+++...
T Consensus       166 D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~  201 (317)
T 3gjy_A          166 DVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG  201 (317)
T ss_dssp             CCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence            6543321 1 1  26789999999999999987653

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.16  E-value=1.7e-10  Score=113.22  Aligned_cols=105  Identities=12%  Similarity=0.067  Sum_probs=80.5

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCC--CeEEEEecccCCccccc--ccCc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNP--KLEFVVANIADQNLESI--FLAK  104 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~--~i~~~~~Di~~~~l~~~--~~~~  104 (433)
                      .++.+|||+|||+|.++..++.    .+ .+|+++|+|+.+++.|++++   ...  +++++++|+.+.. ...  ..++
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~----~g-a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l-~~~~~~~~~  225 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAA----AG-AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFI-QREERRGST  225 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHH----TT-CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHH-HHHHHHTCC
T ss_pred             CCCCcEEEcccccCHHHHHHHH----cC-CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHH-HHHHhcCCC
Confidence            4678999999999999955544    23 49999999999999999987   222  4899999987642 111  1368


Q ss_pred             EeEEEEccc----------ccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646        105 FNKIFSFYC----------LHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       105 fD~Vis~~~----------l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ||+|++...          +++..+...+++++.++|+|||.+++...
T Consensus       226 fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~  273 (332)
T 2igt_A          226 YDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA  273 (332)
T ss_dssp             BSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             ceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence            999999554          23455678899999999999999777653

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.14  E-value=1.4e-10  Score=111.12  Aligned_cols=103  Identities=14%  Similarity=0.168  Sum_probs=78.9

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-------------CCCCeEEEEecccCCccc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-------------TNPKLEFVVANIADQNLE   98 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-------------~~~~i~~~~~Di~~~~l~   98 (433)
                      .++.+|||||||+|..+..+++ . +.  .+++++|+++.+++.|++++             ..++++++.+|+.+. +.
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~-~-~~--~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~-l~  148 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQ-H-DV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF-IK  148 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTT-S-CC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHH-HH
T ss_pred             CCCCeEEEEcCCcCHHHHHHHh-C-CC--CEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHH-hc
Confidence            4578999999999999954443 3 43  49999999999999999987             246799999997653 22


Q ss_pred             ccccCcEeEEEEcccccchh--h--HHHHHHHHHHhccCCCEEEEEe
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQ--D--QRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~--d--~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .  .++||+|++....++..  .  ...++++++++|+|||.+++..
T Consensus       149 ~--~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          149 N--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             H--CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c--cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            1  37899999976643321  1  2678999999999999998763

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.13  E-value=2.3e-10  Score=116.95  Aligned_cols=115  Identities=20%  Similarity=0.221  Sum_probs=85.4

Q ss_pred             cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcE
Q psy11646         29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKF  105 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~f  105 (433)
                      +...++.+|||+|||+|..+.. ++...+.. .+++++|+|+.+++.++++.   +..++++.++|+...+ +....++|
T Consensus       255 l~~~~g~~VLDlgaG~G~~t~~-la~~~~~~-~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~-~~~~~~~f  331 (450)
T 2yxl_A          255 LDPKPGETVVDLAAAPGGKTTH-LAELMKNK-GKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAP-EIIGEEVA  331 (450)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHH-HHHHTTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCS-SSSCSSCE
T ss_pred             cCCCCcCEEEEeCCCccHHHHH-HHHHcCCC-CEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcc-hhhccCCC
Confidence            3457889999999999999944 44444432 49999999999999999887   4457999999987653 11222689


Q ss_pred             eEEEEc------ccccchhh----------------HHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        106 NKIFSF------YCLHWVQD----------------QRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       106 D~Vis~------~~l~~~~d----------------~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      |+|++.      .++++.++                +..++.++.++|||||.+++++.+..+
T Consensus       332 D~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~  394 (450)
T 2yxl_A          332 DKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFK  394 (450)
T ss_dssp             EEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred             CEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence            999973      23332222                157899999999999999988765543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.13  E-value=2.6e-10  Score=105.51  Aligned_cols=111  Identities=16%  Similarity=0.060  Sum_probs=82.8

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCcc
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNL   97 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l   97 (433)
                      |..+...+  +++.+|||||||+|.++ ..++...+.  .+|+++|+++.+++.|+++.   + ..++++.++|..+...
T Consensus        12 L~~i~~~v--~~g~~VlDIGtGsG~l~-i~la~~~~~--~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~   86 (230)
T 3lec_A           12 LQKVANYV--PKGARLLDVGSDHAYLP-IFLLQMGYC--DFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFE   86 (230)
T ss_dssp             HHHHHTTS--CTTEEEEEETCSTTHHH-HHHHHTTCE--EEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC
T ss_pred             HHHHHHhC--CCCCEEEEECCchHHHH-HHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccc
Confidence            44444444  57889999999999999 444544333  48999999999999999998   2 3579999999876532


Q ss_pred             cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      +.   +.||+|+..+..-  .-....+.+..+.|+++|++++.-.
T Consensus        87 ~~---~~~D~IviaGmGg--~lI~~IL~~~~~~l~~~~~lIlqp~  126 (230)
T 3lec_A           87 EA---DNIDTITICGMGG--RLIADILNNDIDKLQHVKTLVLQPN  126 (230)
T ss_dssp             GG---GCCCEEEEEEECH--HHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             cc---cccCEEEEeCCch--HHHHHHHHHHHHHhCcCCEEEEECC
Confidence            21   3799988766543  2256678888899999999988753

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.12  E-value=4.2e-10  Score=103.94  Aligned_cols=111  Identities=14%  Similarity=0.044  Sum_probs=82.2

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCcc
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNL   97 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l   97 (433)
                      |..+.+.+  +++.+|||||||+|.++ ..++...+.  .+|+++|+++.+++.|+++.   + ..++++..+|..+. +
T Consensus         6 L~~l~~~v--~~g~~VlDIGtGsG~l~-i~la~~~~~--~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~-l   79 (225)
T 3kr9_A            6 LELVASFV--SQGAILLDVGSDHAYLP-IELVERGQI--KSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA-F   79 (225)
T ss_dssp             HHHHHTTS--CTTEEEEEETCSTTHHH-HHHHHTTSE--EEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG-C
T ss_pred             HHHHHHhC--CCCCEEEEeCCCcHHHH-HHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhh-c
Confidence            44444444  57889999999999999 445544443  48999999999999999988   2 24699999998543 3


Q ss_pred             cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      +.  .+.||+|+..+.-.  .-....+.+..+.|+|+|++++.-.
T Consensus        80 ~~--~~~~D~IviaG~Gg--~~i~~Il~~~~~~L~~~~~lVlq~~  120 (225)
T 3kr9_A           80 EE--TDQVSVITIAGMGG--RLIARILEEGLGKLANVERLILQPN  120 (225)
T ss_dssp             CG--GGCCCEEEEEEECH--HHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred             cc--CcCCCEEEEcCCCh--HHHHHHHHHHHHHhCCCCEEEEECC
Confidence            32  13699998766532  2256788899999999999988654

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.12  E-value=6.6e-10  Score=110.74  Aligned_cols=104  Identities=13%  Similarity=0.106  Sum_probs=80.4

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKI  108 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~V  108 (433)
                      .++.+|||+| |+|.++. .++...+.  .+++|+|+|+.|++.|+++.   +..+++++++|+... ++....++||+|
T Consensus       171 ~~~~~VLDlG-G~G~~~~-~la~~~~~--~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~-l~~~~~~~fD~V  245 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSI-ALMLSGLP--KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKP-LPDYALHKFDTF  245 (373)
T ss_dssp             STTCEEEEES-CTTCHHH-HHHHHTCC--SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSC-CCTTTSSCBSEE
T ss_pred             CCCCEEEEEC-CCCHHHH-HHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhh-chhhccCCccEE
Confidence            3688999999 9999994 44544333  39999999999999999987   333899999999872 221123689999


Q ss_pred             EEcccccchhhHHHHHHHHHHhccCCCEE-EEEe
Q psy11646        109 FSFYCLHWVQDQRQAISNIYNLLMPGGEV-LLLL  141 (433)
Q Consensus       109 is~~~l~~~~d~~~~l~~i~~~LkpGG~l-ll~~  141 (433)
                      +++.+++... ...+++++.++|+|||.+ ++..
T Consensus       246 i~~~p~~~~~-~~~~l~~~~~~LkpgG~~~~~~~  278 (373)
T 2qm3_A          246 ITDPPETLEA-IRAFVGRGIATLKGPRCAGYFGI  278 (373)
T ss_dssp             EECCCSSHHH-HHHHHHHHHHTBCSTTCEEEEEE
T ss_pred             EECCCCchHH-HHHHHHHHHHHcccCCeEEEEEE
Confidence            9998876554 578899999999999954 4444

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.12  E-value=1.4e-10  Score=112.87  Aligned_cols=105  Identities=18%  Similarity=0.181  Sum_probs=76.6

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC-------CCCeEEEEecccCCcccccccCc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT-------NPKLEFVVANIADQNLESIFLAK  104 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~-------~~~i~~~~~Di~~~~l~~~~~~~  104 (433)
                      ..+.+|||||||+|..+..+ ++..+.  .+++++|+++.+++.|++++.       .++++++.+|+... ++. ..++
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l-~~~~~~--~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~-l~~-~~~~  181 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREV-LKHESV--EKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF-LKN-HKNE  181 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHH-TTCTTC--CEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH-HHH-CTTC
T ss_pred             CCCCEEEEEcCCcCHHHHHH-HHcCCC--CEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHH-HHh-cCCC
Confidence            45689999999999999544 444333  499999999999999999872       46799999998653 221 2378


Q ss_pred             EeEEEEcccccchhh--H--HHHHHHHHHhccCCCEEEEEe
Q psy11646        105 FNKIFSFYCLHWVQD--Q--RQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       105 fD~Vis~~~l~~~~d--~--~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ||+|++....+..+.  .  ..++++++++|+|||.+++..
T Consensus       182 fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          182 FDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             EEEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             ceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            999998664332221  1  678999999999999998753

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.12  E-value=1.6e-10  Score=111.94  Aligned_cols=107  Identities=15%  Similarity=0.124  Sum_probs=78.6

Q ss_pred             CCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-C------CCCeEEEEecccCCccccccc
Q psy11646         30 KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-T------NPKLEFVVANIADQNLESIFL  102 (433)
Q Consensus        30 ~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~------~~~i~~~~~Di~~~~l~~~~~  102 (433)
                      .+..+.+|||||||+|..+..+ ++..+.  .+++++|+++.+++.|++++ .      .++++++.+|+... ++ ...
T Consensus        92 ~~~~~~~VLdiG~G~G~~~~~l-~~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~-l~-~~~  166 (304)
T 2o07_A           92 SHPNPRKVLIIGGGDGGVLREV-VKHPSV--ESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF-MK-QNQ  166 (304)
T ss_dssp             TSSSCCEEEEEECTTSHHHHHH-TTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-HH-TCS
T ss_pred             hCCCCCEEEEECCCchHHHHHH-HHcCCC--CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHH-Hh-hCC
Confidence            3456789999999999999544 443332  49999999999999999986 1      47899999998652 11 123


Q ss_pred             CcEeEEEEcccccchh----hHHHHHHHHHHhccCCCEEEEEe
Q psy11646        103 AKFNKIFSFYCLHWVQ----DQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~~----d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ++||+|++....++.+    ....+++++.++|+|||.+++..
T Consensus       167 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          167 DAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             SCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            7899999976543321    12468999999999999998754

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.11  E-value=4.9e-10  Score=107.55  Aligned_cols=109  Identities=21%  Similarity=0.363  Sum_probs=81.7

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC----CCCeEEEEecccCC
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----NPKLEFVVANIADQ   95 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~----~~~i~~~~~Di~~~   95 (433)
                      .++..+++.+...++.+|||||||+|.++..++. .   + .+|+|+|+++.|++.|+++..    ..+++++++|+...
T Consensus        15 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~-~---~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~   89 (285)
T 1zq9_A           15 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-K---A-KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT   89 (285)
T ss_dssp             HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHH-H---S-SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred             HHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHh-h---C-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc
Confidence            4555666777777889999999999999955443 2   2 499999999999999999872    15799999999875


Q ss_pred             cccccccCcEeEEEEcccccchhhHH-HHH--------------HHH--HHhccCCCEEE
Q psy11646         96 NLESIFLAKFNKIFSFYCLHWVQDQR-QAI--------------SNI--YNLLMPGGEVL  138 (433)
Q Consensus        96 ~l~~~~~~~fD~Vis~~~l~~~~d~~-~~l--------------~~i--~~~LkpGG~ll  138 (433)
                      ++     .+||+|+++.++++..... .++              +++  +++++|||.++
T Consensus        90 ~~-----~~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           90 DL-----PFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             CC-----CCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             cc-----hhhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            43     3699999998887765432 222              222  36889999763

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.11  E-value=3.4e-10  Score=113.34  Aligned_cols=108  Identities=13%  Similarity=0.109  Sum_probs=81.1

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCC--CeEEEEecccCCccccc--ccCc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNP--KLEFVVANIADQNLESI--FLAK  104 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~--~i~~~~~Di~~~~l~~~--~~~~  104 (433)
                      .++.+|||+|||+|.++..++.    .+..+|+|+|+|+.+++.|++++   +..  +++++++|+.+. ++..  ...+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~----~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~-l~~~~~~~~~  285 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAM----GGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY-FKYARRHHLT  285 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHH----TTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH-HHHHHHTTCC
T ss_pred             cCCCeEEEEeeccCHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHH-HHHHHHhCCC
Confidence            4678999999999999955543    23248999999999999999987   223  899999998763 2211  1358


Q ss_pred             EeEEEEccccc---------chhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646        105 FNKIFSFYCLH---------WVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       105 fD~Vis~~~l~---------~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      ||+|++.....         ...+...++..+.++|+|||.+++.....
T Consensus       286 fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~  334 (385)
T 2b78_A          286 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  334 (385)
T ss_dssp             EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             ccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            99999965442         22345667888899999999998876543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.10  E-value=3.7e-10  Score=105.37  Aligned_cols=111  Identities=14%  Similarity=0.063  Sum_probs=82.2

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCcc
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNL   97 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l   97 (433)
                      |..+.+.+  +++.+|||||||+|.++ ..++...+.  .+++++|+++.+++.|++++   + ..++++.++|..+...
T Consensus        12 L~~i~~~v--~~g~~VlDIGtGsG~l~-i~la~~~~~--~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~   86 (244)
T 3gnl_A           12 LEKVASYI--TKNERIADIGSDHAYLP-CFAVKNQTA--SFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIE   86 (244)
T ss_dssp             HHHHHTTC--CSSEEEEEETCSTTHHH-HHHHHTTSE--EEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC
T ss_pred             HHHHHHhC--CCCCEEEEECCccHHHH-HHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccC
Confidence            44444444  57889999999999999 445544333  48999999999999999997   2 2469999999876432


Q ss_pred             cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      +.   ++||+|++.+.--  .-....+.+..+.|+++|++++.-.
T Consensus        87 ~~---~~~D~IviagmGg--~lI~~IL~~~~~~L~~~~~lIlq~~  126 (244)
T 3gnl_A           87 KK---DAIDTIVIAGMGG--TLIRTILEEGAAKLAGVTKLILQPN  126 (244)
T ss_dssp             GG---GCCCEEEEEEECH--HHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             cc---ccccEEEEeCCch--HHHHHHHHHHHHHhCCCCEEEEEcC
Confidence            21   3599998765533  2245678888999999999998753

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.10  E-value=3.8e-10  Score=104.36  Aligned_cols=98  Identities=11%  Similarity=0.111  Sum_probs=79.6

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      .++.+|||||||.|-++..++    +.  .+|+|+|+++.|++.++++.  ...+..+.+.|....+++    ++||+|+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~----~~--~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~----~~~DvvL  173 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER----GI--ASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPA----EAGDLAL  173 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT----TC--SEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCC----CBCSEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc----cC--CeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCC----CCcchHH
Confidence            567899999999999984443    33  49999999999999999997  446788999998876555    7899999


Q ss_pred             EcccccchhhH-HHHHHHHHHhccCCCEEEE
Q psy11646        110 SFYCLHWVQDQ-RQAISNIYNLLMPGGEVLL  139 (433)
Q Consensus       110 s~~~l~~~~d~-~~~l~~i~~~LkpGG~lll  139 (433)
                      ++-++|++++. ....-++.+.|+++|.++-
T Consensus       174 llk~lh~LE~q~~~~~~~ll~aL~~~~vvVs  204 (253)
T 3frh_A          174 IFKLLPLLEREQAGSAMALLQSLNTPRMAVS  204 (253)
T ss_dssp             EESCHHHHHHHSTTHHHHHHHHCBCSEEEEE
T ss_pred             HHHHHHHhhhhchhhHHHHHHHhcCCCEEEE
Confidence            99999999754 3344488999999976554

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.09  E-value=2.2e-10  Score=116.85  Aligned_cols=113  Identities=20%  Similarity=0.242  Sum_probs=83.4

Q ss_pred             cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcE
Q psy11646         29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKF  105 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~f  105 (433)
                      +...++.+|||+|||+|..+. .++...+.. .+|+++|+|+.+++.+++++   +.. +.+.++|+....  ....++|
T Consensus        97 L~~~~g~~VLDlgaGpG~kt~-~LA~~~~~~-g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~--~~~~~~F  171 (464)
T 3m6w_A           97 LDPKPGERVLDLAAAPGGKTT-HLAARMGGK-GLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALA--EAFGTYF  171 (464)
T ss_dssp             HCCCTTCEEEESSCTTCHHHH-HHHHHTTTC-SEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHH--HHHCSCE
T ss_pred             cCcCCCCEEEEEcCCcCHHHH-HHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhh--hhccccC
Confidence            345789999999999999994 444444433 49999999999999999987   344 888888876632  2224789


Q ss_pred             eEEEEcccc------cchh----------------hHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        106 NKIFSFYCL------HWVQ----------------DQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       106 D~Vis~~~l------~~~~----------------d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      |+|++....      ...+                .+..++.++.++|||||+++.++.+..+
T Consensus       172 D~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~  234 (464)
T 3m6w_A          172 HRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAP  234 (464)
T ss_dssp             EEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred             CEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCch
Confidence            999974322      1111                1367899999999999999988765443

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.08  E-value=3.9e-10  Score=115.80  Aligned_cols=110  Identities=16%  Similarity=0.219  Sum_probs=82.2

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      ++.+|||+|||+|..+.. ++...+.. .+|+++|+|+.+++.+++++   +..++.+.++|+...+.  ...++||.|+
T Consensus       117 ~g~~VLDl~aGpG~kt~~-lA~~~~~~-g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~--~~~~~fD~Il  192 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQ-ISARMNNE-GAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGA--AVPEMFDAIL  192 (479)
T ss_dssp             CCSEEEESSCTTSHHHHH-HHHHTTTC-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHH--HSTTCEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHH-HHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhh--hccccCCEEE
Confidence            889999999999999944 44444332 49999999999999999987   44679999999876421  1237899999


Q ss_pred             Eccc------ccchh----------------hHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        110 SFYC------LHWVQ----------------DQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       110 s~~~------l~~~~----------------d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      +...      +...+                .+..++.++.++|||||+++.++.+..+
T Consensus       193 ~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~  251 (479)
T 2frx_A          193 LDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQ  251 (479)
T ss_dssp             EECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSS
T ss_pred             ECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCc
Confidence            8422      21111                1356799999999999999998765443

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.08  E-value=2.1e-09  Score=97.40  Aligned_cols=108  Identities=12%  Similarity=0.178  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC--CCCeEEEEecccCC
Q psy11646         18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT--NPKLEFVVANIADQ   95 (433)
Q Consensus        18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~--~~~i~~~~~Di~~~   95 (433)
                      +..++. .+......++.+|||+|||+|.++..++. .   +..+++|+|+|+.+++.|+++..  ..++++.++|+.+.
T Consensus        35 ~~~l~~-~~~~~~~~~~~~vlD~g~G~G~~~~~l~~-~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~  109 (207)
T 1wy7_A           35 ASELLW-LAYSLGDIEGKVVADLGAGTGVLSYGALL-L---GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF  109 (207)
T ss_dssp             HHHHHH-HHHHTTSSTTCEEEEETCTTCHHHHHHHH-T---TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC
T ss_pred             HHHHHH-HHHHcCCCCcCEEEEeeCCCCHHHHHHHH-c---CCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHc
Confidence            334443 33333445788999999999999954443 2   22389999999999999999872  12799999998774


Q ss_pred             cccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEE
Q psy11646         96 NLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVL  138 (433)
Q Consensus        96 ~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~ll  138 (433)
                        +    ++||+|+++.++++..  .....++++.+++  ||.++
T Consensus       110 --~----~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~  146 (207)
T 1wy7_A          110 --N----SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYS  146 (207)
T ss_dssp             --C----CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEE
T ss_pred             --C----CCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEE
Confidence              2    5899999999988764  3456788888888  55443

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.08  E-value=3.1e-10  Score=105.89  Aligned_cols=101  Identities=11%  Similarity=0.204  Sum_probs=81.0

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      .+..+|||||||+|-++ ..+....+.  .+|+++|+++.|++.+++++  ...+..+.+.|....+.+    +.||+++
T Consensus       131 ~~p~~VLDLGCG~GpLA-l~~~~~~p~--a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~----~~~DvaL  203 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLA-APWMGLPAE--TVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLD----EPADVTL  203 (281)
T ss_dssp             CCCSEEEETTCTTGGGC-CTTTTCCTT--CEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCC----SCCSEEE
T ss_pred             CCCceeeeeccCccHHH-HHHHhhCCC--CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCC----CCcchHH
Confidence            45779999999999998 444444344  49999999999999999998  345678888898765444    8899999


Q ss_pred             EcccccchhhHH--HHHHHHHHhccCCCEEEEE
Q psy11646        110 SFYCLHWVQDQR--QAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       110 s~~~l~~~~d~~--~~l~~i~~~LkpGG~lll~  140 (433)
                      ++-++|++++..  ..+ ++.+.|+|+|.++-.
T Consensus       204 ~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSf  235 (281)
T 3lcv_B          204 LLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTF  235 (281)
T ss_dssp             ETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEE
T ss_pred             HHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEec
Confidence            999999997653  345 999999999976643

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.08  E-value=2.7e-10  Score=115.98  Aligned_cols=114  Identities=18%  Similarity=0.190  Sum_probs=84.3

Q ss_pred             cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcE
Q psy11646         29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKF  105 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~f  105 (433)
                      +...++.+|||+|||+|..+..++ ...+.. .+|+++|+|+.+++.+++++   +..++.+.+.|.....  ....++|
T Consensus       101 L~~~~g~~VLDlcaGpGgkt~~lA-~~~~~~-g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~--~~~~~~F  176 (456)
T 3m4x_A          101 AAAKPGEKVLDLCAAPGGKSTQLA-AQMKGK-GLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELV--PHFSGFF  176 (456)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHH-HHHTTC-SEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHH--HHHTTCE
T ss_pred             cCCCCCCEEEEECCCcCHHHHHHH-HHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh--hhccccC
Confidence            345789999999999999995444 333332 49999999999999999987   4567889888886632  2224789


Q ss_pred             eEEEEcccc------cch----------------hhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        106 NKIFSFYCL------HWV----------------QDQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       106 D~Vis~~~l------~~~----------------~d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      |+|++....      ..-                ..+...+.++.++|||||.++.++.+..+
T Consensus       177 D~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~  239 (456)
T 3m4x_A          177 DRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP  239 (456)
T ss_dssp             EEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG
T ss_pred             CEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc
Confidence            999985542      111                11237799999999999999988765544

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.07  E-value=5.2e-10  Score=113.61  Aligned_cols=114  Identities=18%  Similarity=0.260  Sum_probs=84.0

Q ss_pred             cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEe
Q psy11646         29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFN  106 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD  106 (433)
                      +...++.+|||+|||+|..+. .++...+.  .+++++|+++.+++.+++++  ...++++.++|+...+ .....++||
T Consensus       242 l~~~~g~~VLDlgaG~G~~t~-~la~~~~~--~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~-~~~~~~~fD  317 (429)
T 1sqg_A          242 LAPQNGEHILDLCAAPGGKTT-HILEVAPE--AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPS-QWCGEQQFD  317 (429)
T ss_dssp             HCCCTTCEEEEESCTTCHHHH-HHHHHCTT--CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTH-HHHTTCCEE
T ss_pred             cCCCCcCeEEEECCCchHHHH-HHHHHcCC--CEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhch-hhcccCCCC
Confidence            345789999999999999994 44545444  49999999999999999987  2335789999987643 112236899


Q ss_pred             EEEEcc------cccchhh----------------HHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        107 KIFSFY------CLHWVQD----------------QRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       107 ~Vis~~------~l~~~~d----------------~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      +|++..      ++++.++                +...+.++.++|||||.+++++.+..+
T Consensus       318 ~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~  379 (429)
T 1sqg_A          318 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP  379 (429)
T ss_dssp             EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred             EEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence            999743      2222222                247799999999999999998755443

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.06  E-value=7.1e-10  Score=110.54  Aligned_cols=104  Identities=15%  Similarity=0.190  Sum_probs=78.1

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC-CCeEEEEecccCCcccccccCcEe
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN-PKLEFVVANIADQNLESIFLAKFN  106 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~-~~i~~~~~Di~~~~l~~~~~~~fD  106 (433)
                      +.++.+|||+|||+|.++..++ ...+.  .+++|+|+|+.|++.|++++   +. .++++.++|+.+.+.+.   ++||
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a-~~~~~--~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~---~~fD  288 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELA-LRRYS--GEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYV---DSVD  288 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHH-HTTCC--SCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTC---SCEE
T ss_pred             cCCCCEEEEccCcCcHHHHHHH-HhCCC--CeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCccc---CCcC
Confidence            5788999999999999995444 33332  28999999999999999987   22 47999999998865443   7899


Q ss_pred             EEEEcccccc-------hhh-HHHHHHHHHHhccCCCEEEEEec
Q psy11646        107 KIFSFYCLHW-------VQD-QRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       107 ~Vis~~~l~~-------~~d-~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      +|+++.++..       +.+ ...+++.+.++|  ||.+++...
T Consensus       289 ~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~  330 (373)
T 3tm4_A          289 FAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT  330 (373)
T ss_dssp             EEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES
T ss_pred             EEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC
Confidence            9999877543       222 256788888988  555555443

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.05  E-value=6.9e-10  Score=111.22  Aligned_cols=107  Identities=13%  Similarity=0.098  Sum_probs=78.7

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      +++.+|||+|||+|.++..++.    .+ ..|+++|+|+.+++.|++++  ..-...+.++|+.+. ++.. .+.||+|+
T Consensus       213 ~~g~~VLDlg~GtG~~sl~~a~----~g-a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~-l~~~-~~~fD~Ii  285 (393)
T 4dmg_A          213 RPGERVLDVYSYVGGFALRAAR----KG-AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPT-LRGL-EGPFHHVL  285 (393)
T ss_dssp             CTTCEEEEESCTTTHHHHHHHH----TT-CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHH-HHTC-CCCEEEEE
T ss_pred             cCCCeEEEcccchhHHHHHHHH----cC-CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHH-HHHh-cCCCCEEE
Confidence            4689999999999999955544    23 46999999999999999987  112235678887653 2211 24599999


Q ss_pred             Ecccccc---------hhhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646        110 SFYCLHW---------VQDQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus       110 s~~~l~~---------~~d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      +......         ..+...++..+.++|+|||.+++......
T Consensus       286 ~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~  330 (393)
T 4dmg_A          286 LDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH  330 (393)
T ss_dssp             ECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             ECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            9766422         24556789999999999999987765444

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.04  E-value=3.9e-10  Score=106.89  Aligned_cols=94  Identities=12%  Similarity=0.132  Sum_probs=76.1

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC-------CCCeEEEEecccCCcccccccC
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT-------NPKLEFVVANIADQNLESIFLA  103 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~-------~~~i~~~~~Di~~~~l~~~~~~  103 (433)
                      +..+.+|||||||+|..+..+++ . + .  +++++|+++.+++.|++++.       .+++++..+|.....      +
T Consensus        70 ~~~~~~VL~iG~G~G~~~~~ll~-~-~-~--~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~------~  138 (262)
T 2cmg_A           70 KKELKEVLIVDGFDLELAHQLFK-Y-D-T--HIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI------K  138 (262)
T ss_dssp             SSCCCEEEEESSCCHHHHHHHTT-S-S-C--EEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC------C
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHh-C-C-C--EEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH------h
Confidence            34568999999999999955554 3 3 4  99999999999999998762       367999988987642      6


Q ss_pred             cEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        104 KFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       104 ~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +||+|++..     .++..+++++.++|+|||.+++.
T Consensus       139 ~fD~Ii~d~-----~dp~~~~~~~~~~L~pgG~lv~~  170 (262)
T 2cmg_A          139 KYDLIFCLQ-----EPDIHRIDGLKRMLKEDGVFISV  170 (262)
T ss_dssp             CEEEEEESS-----CCCHHHHHHHHTTEEEEEEEEEE
T ss_pred             hCCEEEECC-----CChHHHHHHHHHhcCCCcEEEEE
Confidence            799999863     34556899999999999999875

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.03  E-value=7.5e-10  Score=109.10  Aligned_cols=121  Identities=18%  Similarity=0.225  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHhc-CCCCCCEEEEECCCCChhHHHHhcccCCC--CCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecc
Q psy11646         18 AAKLLSQYIDQF-KWTDNESVLDVGCGPGNVTSKLLLPNLPK--SVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANI   92 (433)
Q Consensus        18 ~~~ll~~l~~~l-~~~~~~~VLDIGcG~G~~~~~~l~~~~~~--~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di   92 (433)
                      ...++..++..+ ...++.+|||+|||+|.++..++......  ...+++|+|+++.+++.|+.+.  ...++.+.++|.
T Consensus       114 i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~  193 (344)
T 2f8l_A          114 IGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDG  193 (344)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCT
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCC
Confidence            334444454443 33467899999999999985554432111  0148999999999999999986  122688999997


Q ss_pred             cCCcccccccCcEeEEEEcccccchhhH------------------HHHHHHHHHhccCCCEEEEEec
Q psy11646         93 ADQNLESIFLAKFNKIFSFYCLHWVQDQ------------------RQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        93 ~~~~l~~~~~~~fD~Vis~~~l~~~~d~------------------~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      .... .   .++||+|+++.++++.+..                  ...+..+.+.|+|||++++..+
T Consensus       194 l~~~-~---~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p  257 (344)
T 2f8l_A          194 LANL-L---VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP  257 (344)
T ss_dssp             TSCC-C---CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCcc-c---cCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence            6532 2   3789999999987665321                  2578999999999999988764

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.01  E-value=1.8e-09  Score=108.45  Aligned_cols=108  Identities=20%  Similarity=0.175  Sum_probs=82.8

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC-C-CeEEEEecccCCccccc--ccCc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN-P-KLEFVVANIADQNLESI--FLAK  104 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~-~-~i~~~~~Di~~~~l~~~--~~~~  104 (433)
                      .++.+|||+|||+|.++..++. .   +..+|+|+|+|+.+++.|++++   +. . +++++++|+.+. ++..  ..++
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~-~---g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~-~~~~~~~~~~  293 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALM-G---GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL-LRTYRDRGEK  293 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHH-T---TCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHH-HHHHHHTTCC
T ss_pred             hCCCeEEEeeccCCHHHHHHHH-C---CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHH-HHHHHhcCCC
Confidence            4688999999999999955443 2   2248999999999999999987   22 3 789999998764 2211  1368


Q ss_pred             EeEEEEccccc---------chhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646        105 FNKIFSFYCLH---------WVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       105 fD~Vis~~~l~---------~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      ||+|++.....         ........+.++.++|+|||.+++.....
T Consensus       294 fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  342 (396)
T 3c0k_A          294 FDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG  342 (396)
T ss_dssp             EEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            99999976542         22567788999999999999999876543

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.01  E-value=2e-09  Score=103.95  Aligned_cols=89  Identities=26%  Similarity=0.396  Sum_probs=66.2

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQN   96 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~   96 (433)
                      .+++.+++.+...++.+|||||||+|.++. .++..   + .+|+|+|+++.+++.|+++.   ...+++++++|+...+
T Consensus        29 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~-~La~~---~-~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~  103 (299)
T 2h1r_A           29 GILDKIIYAAKIKSSDIVLEIGCGTGNLTV-KLLPL---A-KKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTV  103 (299)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTSTTHH-HHTTT---S-SEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSC
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcCcCcHHHH-HHHhc---C-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCC
Confidence            345555666666788999999999999994 44432   2 59999999999999999886   3368999999998754


Q ss_pred             ccccccCcEeEEEEcccccchh
Q psy11646         97 LESIFLAKFNKIFSFYCLHWVQ  118 (433)
Q Consensus        97 l~~~~~~~fD~Vis~~~l~~~~  118 (433)
                      +     ++||+|+++..+++..
T Consensus       104 ~-----~~~D~Vv~n~py~~~~  120 (299)
T 2h1r_A          104 F-----PKFDVCTANIPYKISS  120 (299)
T ss_dssp             C-----CCCSEEEEECCGGGHH
T ss_pred             c-----ccCCEEEEcCCccccc
Confidence            3     4799999998887654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.00  E-value=1.6e-09  Score=116.46  Aligned_cols=105  Identities=17%  Similarity=0.174  Sum_probs=82.6

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC--CCeEEEEecccCCcccccccCcEeE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN--PKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~--~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      ++.+|||+|||+|.++..++.    .+..+|+++|+|+.+++.|++++   +.  .+++++++|+.+. ++ ...++||+
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~----~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~-l~-~~~~~fD~  612 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGL----GGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAW-LR-EANEQFDL  612 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHH----TTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHH-HH-HCCCCEEE
T ss_pred             CCCcEEEeeechhHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH-HH-hcCCCccE
Confidence            688999999999999955544    23247999999999999999987   22  4799999998763 22 12378999


Q ss_pred             EEEccc-----------ccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646        108 IFSFYC-----------LHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       108 Vis~~~-----------l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      |++...           ++...+....+..+.++|+|||.+++....
T Consensus       613 Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          613 IFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             EEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            999664           344466788899999999999999987644

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.00  E-value=1.8e-09  Score=101.27  Aligned_cols=102  Identities=12%  Similarity=0.267  Sum_probs=71.6

Q ss_pred             hhhhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CC
Q psy11646          4 ATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TN   82 (433)
Q Consensus         4 a~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~   82 (433)
                      ...|.+....+.    .+++.+++.+...++.+|||||||+|.++..++. .   + .+++|+|+|+.|++.|+++. ..
T Consensus         5 ~k~~gQ~fl~d~----~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~-~---~-~~v~~vD~~~~~~~~a~~~~~~~   75 (244)
T 1qam_A            5 NIKHSQNFITSK----HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQ-R---C-NFVTAIEIDHKLCKTTENKLVDH   75 (244)
T ss_dssp             -----CCBCCCH----HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHH-H---S-SEEEEECSCHHHHHHHHHHTTTC
T ss_pred             CccCCccccCCH----HHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHH-c---C-CeEEEEECCHHHHHHHHHhhccC
Confidence            345555444444    4455667777777889999999999999955543 2   2 49999999999999999987 34


Q ss_pred             CCeEEEEecccCCcccccccCcEeEEEEcccccch
Q psy11646         83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWV  117 (433)
Q Consensus        83 ~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~  117 (433)
                      .+++++++|+.+.+++.  ...| .|+++..++..
T Consensus        76 ~~v~~~~~D~~~~~~~~--~~~~-~vv~nlPy~~~  107 (244)
T 1qam_A           76 DNFQVLNKDILQFKFPK--NQSY-KIFGNIPYNIS  107 (244)
T ss_dssp             CSEEEECCCGGGCCCCS--SCCC-EEEEECCGGGH
T ss_pred             CCeEEEEChHHhCCccc--CCCe-EEEEeCCcccC
Confidence            68999999998865542  1345 57777766543

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.98  E-value=1.3e-09  Score=109.37  Aligned_cols=108  Identities=19%  Similarity=0.202  Sum_probs=82.5

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCC-CeEEEEecccCCccccc--ccCcE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNP-KLEFVVANIADQNLESI--FLAKF  105 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~-~i~~~~~Di~~~~l~~~--~~~~f  105 (433)
                      +++.+|||+|||+|.++..++. .   +..+|+|+|+|+.+++.|++++   +.. ++++.++|+.+.. +..  ..++|
T Consensus       216 ~~~~~VLDl~~G~G~~~~~la~-~---g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~-~~~~~~~~~f  290 (396)
T 2as0_A          216 QPGDRVLDVFTYTGGFAIHAAI-A---GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEM-EKLQKKGEKF  290 (396)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHH-T---TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHH-HHHHHTTCCE
T ss_pred             hCCCeEEEecCCCCHHHHHHHH-C---CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHH-HHHHhhCCCC
Confidence            4788999999999999955543 2   2248999999999999999987   222 7999999987642 211  13689


Q ss_pred             eEEEEccccc---------chhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646        106 NKIFSFYCLH---------WVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       106 D~Vis~~~l~---------~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      |+|++.....         +..+....+.++.++|+|||.+++.....
T Consensus       291 D~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          291 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence            9999975442         22456788999999999999988876544

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.97  E-value=5.1e-09  Score=106.37  Aligned_cols=117  Identities=18%  Similarity=0.254  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEec
Q psy11646         15 QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVAN   91 (433)
Q Consensus        15 ~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~D   91 (433)
                      +..++.+++.+++.+...++.+|||+|||+|.++.. ++..    ..+|+|+|+|+.+++.|++++   +..+++|.++|
T Consensus       268 ~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~-la~~----~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d  342 (433)
T 1uwv_A          268 AGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLP-LATQ----AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN  342 (433)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHH-HHTT----SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             HHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHH-HHhh----CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECC
Confidence            556777888888887777888999999999999944 4432    259999999999999999987   33589999999


Q ss_pred             ccCCcccc--cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         92 IADQNLES--IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        92 i~~~~l~~--~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +.+. ++.  ...++||+|++........   .+++.+. .++|++.++++.
T Consensus       343 ~~~~-l~~~~~~~~~fD~Vv~dPPr~g~~---~~~~~l~-~~~p~~ivyvsc  389 (433)
T 1uwv_A          343 LEED-VTKQPWAKNGFDKVLLDPARAGAA---GVMQQII-KLEPIRIVYVSC  389 (433)
T ss_dssp             TTSC-CSSSGGGTTCCSEEEECCCTTCCH---HHHHHHH-HHCCSEEEEEES
T ss_pred             HHHH-hhhhhhhcCCCCEEEECCCCccHH---HHHHHHH-hcCCCeEEEEEC
Confidence            9773 221  2336899999987765543   3444444 378888777653

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.94  E-value=2.2e-09  Score=107.33  Aligned_cols=107  Identities=19%  Similarity=0.166  Sum_probs=82.2

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCccccc--ccCcEeE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESI--FLAKFNK  107 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~--~~~~fD~  107 (433)
                      ++.+|||+|||+|.++..++. .    ..+|+|+|+|+.+++.|++++   +..++++.++|+.+. ++..  ..++||+
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~-~----~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~-~~~~~~~~~~fD~  282 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLAL-G----FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDL-LRRLEKEGERFDL  282 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHH-H----EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHH-HHHHHHTTCCEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHH-h----CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHH-HHHHHhcCCCeeE
Confidence            678999999999999955543 2    258999999999999999987   334599999998764 2211  1368999


Q ss_pred             EEEccccc---------chhhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646        108 IFSFYCLH---------WVQDQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus       108 Vis~~~l~---------~~~d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      |++.....         ...+....+.++.++|+|||.+++......
T Consensus       283 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  329 (382)
T 1wxx_A          283 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH  329 (382)
T ss_dssp             EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            99965432         224567789999999999999998865443

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.94  E-value=2.5e-09  Score=102.95  Aligned_cols=91  Identities=18%  Similarity=0.314  Sum_probs=74.3

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCccc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLE   98 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~   98 (433)
                      .++..+++.+...++.+|||||||+|.++..++. .   + .+|+++|+++.|++.+++++ ...+++++++|+.+.+++
T Consensus        37 ~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~-~---~-~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~  111 (295)
T 3gru_A           37 NFVNKAVESANLTKDDVVLEIGLGKGILTEELAK-N---A-KKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLN  111 (295)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHH-H---S-SEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGG
T ss_pred             HHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHh-c---C-CEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcc
Confidence            4566677777778899999999999999954443 3   2 49999999999999999987 456899999999887665


Q ss_pred             ccccCcEeEEEEcccccchh
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQ  118 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~  118 (433)
                      .   ..||.|+++..++...
T Consensus       112 ~---~~fD~Iv~NlPy~is~  128 (295)
T 3gru_A          112 K---LDFNKVVANLPYQISS  128 (295)
T ss_dssp             G---SCCSEEEEECCGGGHH
T ss_pred             c---CCccEEEEeCcccccH
Confidence            4   6799999998877653

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.93  E-value=4.7e-09  Score=98.99  Aligned_cols=91  Identities=10%  Similarity=0.222  Sum_probs=70.5

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCccc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLE   98 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~   98 (433)
                      .++..+++.+...++.+|||||||+|.++. .++..   + .+|+++|+++.|++.+++++ ...+++++++|+.+.+++
T Consensus        16 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-~La~~---~-~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~   90 (255)
T 3tqs_A           16 FVLQKIVSAIHPQKTDTLVEIGPGRGALTD-YLLTE---C-DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS   90 (255)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTTTTHH-HHTTT---S-SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcccccHHHH-HHHHh---C-CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence            344556666677789999999999999994 44432   2 59999999999999999987 346899999999987766


Q ss_pred             ccc-cCcEeEEEEcccccc
Q psy11646         99 SIF-LAKFNKIFSFYCLHW  116 (433)
Q Consensus        99 ~~~-~~~fD~Vis~~~l~~  116 (433)
                      +.. .++|| |+++..++.
T Consensus        91 ~~~~~~~~~-vv~NlPY~i  108 (255)
T 3tqs_A           91 SVKTDKPLR-VVGNLPYNI  108 (255)
T ss_dssp             GSCCSSCEE-EEEECCHHH
T ss_pred             HhccCCCeE-EEecCCccc
Confidence            422 35788 778777653

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.92  E-value=1.1e-10  Score=109.39  Aligned_cols=128  Identities=20%  Similarity=0.305  Sum_probs=87.0

Q ss_pred             CCchhhhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc
Q psy11646          1 MHKATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH   80 (433)
Q Consensus         1 m~~a~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~   80 (433)
                      |.....|.+....+.    .+++.+++.+...++.+|||||||+|.++..++. .   + .+++|+|+|+.+++.|+++.
T Consensus         1 ~~~~k~~gq~fl~~~----~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~-~---~-~~v~~id~~~~~~~~a~~~~   71 (245)
T 1yub_A            1 MNKNIKYSQNFLTSE----KVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAK-I---S-KQVTSIELDSHLFNLSSEKL   71 (245)
T ss_dssp             CCCCCCSCCCBCCCT----TTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHH-H---S-SEEEESSSSCSSSSSSSCTT
T ss_pred             CCCCcccCCCCCCCH----HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHH-h---C-CeEEEEECCHHHHHHHHHHh
Confidence            334445555433333    3344556666667889999999999999944443 3   2 49999999999999998876


Q ss_pred             -CCCCeEEEEecccCCcccccccCcEeEEEEcccccchhh-----------HHHHH----HHHHHhccCCCEEEEE
Q psy11646         81 -TNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQD-----------QRQAI----SNIYNLLMPGGEVLLL  140 (433)
Q Consensus        81 -~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d-----------~~~~l----~~i~~~LkpGG~lll~  140 (433)
                       ...+++++++|+.+.+++.  .++| .|+++...+....           ....+    +.+.++|+|||.+.+.
T Consensus        72 ~~~~~v~~~~~D~~~~~~~~--~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~  144 (245)
T 1yub_A           72 KLNTRVTLIHQDILQFQFPN--KQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL  144 (245)
T ss_dssp             TTCSEEEECCSCCTTTTCCC--SSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred             ccCCceEEEECChhhcCccc--CCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence             3467999999998765431  2578 7788765543211           11223    5588899999876654

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.92  E-value=2.2e-09  Score=108.23  Aligned_cols=112  Identities=17%  Similarity=0.252  Sum_probs=81.1

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES   99 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~   99 (433)
                      .+.+.+++.+...++.+|||+|||+|.++..++....+.  .+++|+|+++.+++.|      .++++.++|+.....  
T Consensus        26 ~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~--~~i~gvDi~~~~~~~a------~~~~~~~~D~~~~~~--   95 (421)
T 2ih2_A           26 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTA--YRFVGVEIDPKALDLP------PWAEGILADFLLWEP--   95 (421)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSC--SEEEEEESCTTTCCCC------TTEEEEESCGGGCCC--
T ss_pred             HHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCC--CeEEEEECCHHHHHhC------CCCcEEeCChhhcCc--
Confidence            445555666654567799999999999995444332122  4999999999998766      478999999876532  


Q ss_pred             cccCcEeEEEEcccccch-----------hhH------------------HHHHHHHHHhccCCCEEEEEecc
Q psy11646        100 IFLAKFNKIFSFYCLHWV-----------QDQ------------------RQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~-----------~d~------------------~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                        .++||+|+++..+...           ++.                  ..++..+.++|+|||.+++..+.
T Consensus        96 --~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~  166 (421)
T 2ih2_A           96 --GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA  166 (421)
T ss_dssp             --SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             --cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence              2689999998655322           111                  14588999999999999988754

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.92  E-value=2.4e-09  Score=102.02  Aligned_cols=98  Identities=13%  Similarity=0.172  Sum_probs=76.7

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      ++|.+|||+|||+|.++..++. .   +..+|+++|++|.+++.+++++    ...++++..+|..+... .   +.||.
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~-~---g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-~---~~~D~  195 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAV-Y---GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-E---NIADR  195 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHH-H---TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-C---SCEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHH-h---cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-c---cCCCE
Confidence            6899999999999999955543 2   2248999999999999999988    23579999999877532 2   78999


Q ss_pred             EEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |+++.....    ...+..+.++|+|||.+.+..
T Consensus       196 Vi~~~p~~~----~~~l~~a~~~lk~gG~ih~~~  225 (278)
T 3k6r_A          196 ILMGYVVRT----HEFIPKALSIAKDGAIIHYHN  225 (278)
T ss_dssp             EEECCCSSG----GGGHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCCCcH----HHHHHHHHHHcCCCCEEEEEe
Confidence            998865432    345666778999999887654

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.90  E-value=4.8e-09  Score=103.04  Aligned_cols=98  Identities=16%  Similarity=0.241  Sum_probs=78.3

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCcccccccCcEeE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      .++.+|||+|||+|.++..  +.  .  ..+|+|+|+|+.+++.|++++   + ..++++.++|+.+..      ++||+
T Consensus       194 ~~~~~VLDlg~G~G~~~l~--a~--~--~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~------~~fD~  261 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA--CK--N--AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD------VKGNR  261 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH--TT--T--SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC------CCEEE
T ss_pred             CCCCEEEEccCccCHHHHh--cc--C--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc------CCCcE
Confidence            4788999999999999954  32  2  359999999999999999987   2 257999999987653      68999


Q ss_pred             EEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646        108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus       108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                      |++......    ..++..+.++|+|||.+++......
T Consensus       262 Vi~dpP~~~----~~~l~~~~~~L~~gG~l~~~~~~~~  295 (336)
T 2yx1_A          262 VIMNLPKFA----HKFIDKALDIVEEGGVIHYYTIGKD  295 (336)
T ss_dssp             EEECCTTTG----GGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred             EEECCcHhH----HHHHHHHHHHcCCCCEEEEEEeecC
Confidence            999754332    3678889999999999988765443

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.84  E-value=3.9e-09  Score=107.62  Aligned_cols=119  Identities=17%  Similarity=0.174  Sum_probs=86.4

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCC----------CCcEEEEEeCCHHHHHHHHhhc---CCC--C
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPK----------SVVKLVGLDVSPNMIKHAKNHH---TNP--K   84 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~----------~~~~v~gvDiS~~~l~~A~~~~---~~~--~   84 (433)
                      .+...+++.+...++.+|||.|||+|.++..+.......          ...+++|+|+++.+++.|+.+.   +..  +
T Consensus       158 ~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~  237 (445)
T 2okc_A          158 PLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR  237 (445)
T ss_dssp             HHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred             HHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCC
Confidence            344455555566678899999999999985554322100          0137999999999999999876   222  6


Q ss_pred             eEEEEecccCCcccccccCcEeEEEEcccccchhh-----------------HHHHHHHHHHhccCCCEEEEEec
Q psy11646         85 LEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQD-----------------QRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        85 i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d-----------------~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      +.+.++|....+..    ++||+|+++.++.....                 ....+..+.++|+|||++.++.+
T Consensus       238 ~~i~~gD~l~~~~~----~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p  308 (445)
T 2okc_A          238 SPIVCEDSLEKEPS----TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  308 (445)
T ss_dssp             CSEEECCTTTSCCS----SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCEeeCCCCCCccc----CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence            78889997654322    58999999988765321                 13678999999999999988764

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.84  E-value=9.2e-09  Score=97.78  Aligned_cols=91  Identities=13%  Similarity=0.158  Sum_probs=72.0

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES   99 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~   99 (433)
                      .+++.+++.+...++ +|||||||+|.++..++. .   + .+|+|+|+++.|++.+++++...+++++++|+...++++
T Consensus        34 ~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~-~---~-~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~  107 (271)
T 3fut_A           34 AHLRRIVEAARPFTG-PVFEVGPGLGALTRALLE-A---G-AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEE  107 (271)
T ss_dssp             HHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHH-T---T-CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGG
T ss_pred             HHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHH-c---C-CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhh
Confidence            455566677777788 999999999999955544 2   2 489999999999999999985568999999998876553


Q ss_pred             cccCcEeEEEEcccccchh
Q psy11646        100 IFLAKFNKIFSFYCLHWVQ  118 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~  118 (433)
                      .  ..+|.|+++..++...
T Consensus       108 ~--~~~~~iv~NlPy~iss  124 (271)
T 3fut_A          108 V--PQGSLLVANLPYHIAT  124 (271)
T ss_dssp             S--CTTEEEEEEECSSCCH
T ss_pred             c--cCccEEEecCcccccH
Confidence            1  2589999998877543

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.84  E-value=1.7e-08  Score=100.92  Aligned_cols=119  Identities=18%  Similarity=0.248  Sum_probs=88.3

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCC-----------------------------------CCCcEEE
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLP-----------------------------------KSVVKLV   64 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~-----------------------------------~~~~~v~   64 (433)
                      .+...++....+.++.+|||+|||+|.++..++.....                                   ....+++
T Consensus       182 ~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~  261 (385)
T 3ldu_A          182 TLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY  261 (385)
T ss_dssp             HHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred             HHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence            45556677778888999999999999998665432211                                   0013799


Q ss_pred             EEeCCHHHHHHHHhhc---CC-CCeEEEEecccCCcccccccCcEeEEEEccccc-ch---hhHHHHHHHHHHhccC--C
Q psy11646         65 GLDVSPNMIKHAKNHH---TN-PKLEFVVANIADQNLESIFLAKFNKIFSFYCLH-WV---QDQRQAISNIYNLLMP--G  134 (433)
Q Consensus        65 gvDiS~~~l~~A~~~~---~~-~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~-~~---~d~~~~l~~i~~~Lkp--G  134 (433)
                      |+|+++.|++.|++++   +. ..+++.+.|+.+.+.+    ++||+|+++..+. .+   .+...+.+.+.+.|++  |
T Consensus       262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~----~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g  337 (385)
T 3ldu_A          262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE----DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKN  337 (385)
T ss_dssp             EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS----CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBS
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC----CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCC
Confidence            9999999999999987   22 3799999999876433    6899999998864 22   2455677778888876  8


Q ss_pred             CEEEEEec
Q psy11646        135 GEVLLLLN  142 (433)
Q Consensus       135 G~lll~~~  142 (433)
                      |.+++...
T Consensus       338 ~~~~iit~  345 (385)
T 3ldu_A          338 WSYYLITS  345 (385)
T ss_dssp             CEEEEEES
T ss_pred             CEEEEEEC
Confidence            88777653

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.84  E-value=1.1e-08  Score=101.65  Aligned_cols=120  Identities=13%  Similarity=0.110  Sum_probs=84.0

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEe
Q psy11646         14 QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVA   90 (433)
Q Consensus        14 ~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~   90 (433)
                      ....+..++..+++.+... +.+|||+|||+|.++. .+++.    ..+|+|+|+|+.+++.|++++   +..+++|..+
T Consensus       195 n~~~~~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l-~la~~----~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~  268 (369)
T 3bt7_A          195 NAAMNIQMLEWALDVTKGS-KGDLLELYCGNGNFSL-ALARN----FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRM  268 (369)
T ss_dssp             BHHHHHHHHHHHHHHTTTC-CSEEEEESCTTSHHHH-HHGGG----SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred             CHHHHHHHHHHHHHHhhcC-CCEEEEccCCCCHHHH-HHHhc----CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEC
Confidence            3344566666777666543 5789999999999995 45432    248999999999999999987   3358999999


Q ss_pred             cccCCccccccc--------------CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646         91 NIADQNLESIFL--------------AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus        91 Di~~~~l~~~~~--------------~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      |+.+. ++....              .+||+|++...-..      +..++.+.|+++|.++........
T Consensus       269 d~~~~-~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g------~~~~~~~~l~~~g~ivyvsc~p~t  331 (369)
T 3bt7_A          269 AAEEF-TQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG------LDSETEKMVQAYPRILYISCNPET  331 (369)
T ss_dssp             CSHHH-HHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTC------CCHHHHHHHTTSSEEEEEESCHHH
T ss_pred             CHHHH-HHHHhhccccccccccccccCCCCEEEECcCccc------cHHHHHHHHhCCCEEEEEECCHHH
Confidence            98763 111111              37999998765332      234566777899988877554433

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.83  E-value=2.7e-08  Score=99.68  Aligned_cols=119  Identities=16%  Similarity=0.241  Sum_probs=86.8

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCC--C---------------------------------CCcEEE
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLP--K---------------------------------SVVKLV   64 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~--~---------------------------------~~~~v~   64 (433)
                      .+...++....+.++.+|||.+||+|.+++.++.....  +                                 ...+++
T Consensus       188 ~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~  267 (393)
T 3k0b_A          188 TMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII  267 (393)
T ss_dssp             HHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred             HHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence            44555667778888999999999999998555432211  1                                 013699


Q ss_pred             EEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCcccccccCcEeEEEEccccc-ch---hhHHHHHHHHHHhccC--C
Q psy11646         65 GLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLH-WV---QDQRQAISNIYNLLMP--G  134 (433)
Q Consensus        65 gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~-~~---~d~~~~l~~i~~~Lkp--G  134 (433)
                      |+|+++.|++.|++++   + ..++++.++|+.+.+.+    .+||+|+++..+. .+   .+...+.+.+.+.||+  |
T Consensus       268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~----~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g  343 (393)
T 3k0b_A          268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE----DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPT  343 (393)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC----CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC----CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCC
Confidence            9999999999999987   2 24699999999886433    6899999998764 22   2345566777777775  8


Q ss_pred             CEEEEEec
Q psy11646        135 GEVLLLLN  142 (433)
Q Consensus       135 G~lll~~~  142 (433)
                      |.+++...
T Consensus       344 ~~~~iit~  351 (393)
T 3k0b_A          344 WSVYVLTS  351 (393)
T ss_dssp             CEEEEEEC
T ss_pred             CEEEEEEC
Confidence            88887653

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.82  E-value=3.9e-08  Score=98.14  Aligned_cols=119  Identities=13%  Similarity=0.190  Sum_probs=88.5

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCC--C---------------------------------CCcEEE
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLP--K---------------------------------SVVKLV   64 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~--~---------------------------------~~~~v~   64 (433)
                      .+...++....+.++..|||.+||+|.+++.++.....  .                                 ...+++
T Consensus       181 ~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~  260 (384)
T 3ldg_A          181 NMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS  260 (384)
T ss_dssp             HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred             HHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence            44555677777888999999999999998655432211  0                                 013699


Q ss_pred             EEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCcccccccCcEeEEEEcccccc-h---hhHHHHHHHHHHhccC--C
Q psy11646         65 GLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHW-V---QDQRQAISNIYNLLMP--G  134 (433)
Q Consensus        65 gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~-~---~d~~~~l~~i~~~Lkp--G  134 (433)
                      |+|+++.|++.|++++   + ...+++.++|+.+.+.+    .+||+|+++..+.. +   .+...+++.+.+.||+  |
T Consensus       261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~----~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g  336 (384)
T 3ldg_A          261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN----KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKT  336 (384)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC----CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTT
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc----CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCC
Confidence            9999999999999987   2 24699999999886433    58999999987642 2   3456677777788876  8


Q ss_pred             CEEEEEec
Q psy11646        135 GEVLLLLN  142 (433)
Q Consensus       135 G~lll~~~  142 (433)
                      |.+++...
T Consensus       337 ~~~~iit~  344 (384)
T 3ldg_A          337 WSQFILTN  344 (384)
T ss_dssp             SEEEEEES
T ss_pred             cEEEEEEC
Confidence            98887754

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.82  E-value=2.9e-08  Score=100.47  Aligned_cols=108  Identities=19%  Similarity=0.198  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEeccc
Q psy11646         17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIA   93 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~   93 (433)
                      .+..++..+.+   ..++.+|||+|||+|.++..+ ++.   + .+|+|+|+|+.|++.|++++   +.. ++|.++|+.
T Consensus       277 ~~e~l~~~~~~---~~~~~~VLDlgcG~G~~sl~l-a~~---~-~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~  347 (425)
T 2jjq_A          277 QAVNLVRKVSE---LVEGEKILDMYSGVGTFGIYL-AKR---G-FNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDR  347 (425)
T ss_dssp             HHHHHHHHHHH---HCCSSEEEEETCTTTHHHHHH-HHT---T-CEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTT
T ss_pred             HHHHHHHHhhc---cCCCCEEEEeeccchHHHHHH-HHc---C-CEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChH
Confidence            34455555554   357889999999999999544 432   2 59999999999999999987   334 899999998


Q ss_pred             CCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         94 DQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        94 ~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +. ++    .+||+|++........  ..+++.+. .|+|||.++++.
T Consensus       348 ~~-~~----~~fD~Vv~dPPr~g~~--~~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          348 EV-SV----KGFDTVIVDPPRAGLH--PRLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             TC-CC----TTCSEEEECCCTTCSC--HHHHHHHH-HHCCSEEEEEES
T ss_pred             Hc-Cc----cCCCEEEEcCCccchH--HHHHHHHH-hcCCCcEEEEEC
Confidence            75 22    3799999977643221  23455444 589999988864

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.81  E-value=3.8e-08  Score=95.42  Aligned_cols=115  Identities=12%  Similarity=0.051  Sum_probs=79.0

Q ss_pred             cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcE
Q psy11646         29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKF  105 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~f  105 (433)
                      +...++.+|||+|||+|..+..++....+.  .+|+++|+++.+++.+++++   +..+++++.+|+..........++|
T Consensus        98 l~~~~g~~VLDlcaG~G~kt~~la~~~~~~--g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~f  175 (309)
T 2b9e_A           98 LDPPPGSHVIDACAAPGNKTSHLAALLKNQ--GKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEV  175 (309)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTE
T ss_pred             hCCCCCCEEEEeCCChhHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCC
Confidence            345789999999999999995544433233  49999999999999999987   4468999999987653211112579


Q ss_pred             eEEEEccc------ccch-----------hh-------HHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        106 NKIFSFYC------LHWV-----------QD-------QRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       106 D~Vis~~~------l~~~-----------~d-------~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      |.|++...      +..-           .+       +...+..+.++++ ||+++.++.+..+
T Consensus       176 D~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~  239 (309)
T 2b9e_A          176 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQ  239 (309)
T ss_dssp             EEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCG
T ss_pred             CEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCCh
Confidence            99997322      2110           01       2345777777786 9998887655433

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.79  E-value=4.9e-08  Score=91.70  Aligned_cols=90  Identities=21%  Similarity=0.376  Sum_probs=69.2

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES   99 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~   99 (433)
                      .+++.+++.+...++.+|||||||+|.++.. ++.. +  ..+++|+|+++.|++.++++ ...+++++++|+...++++
T Consensus        18 ~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~-L~~~-~--~~~v~avEid~~~~~~~~~~-~~~~v~~i~~D~~~~~~~~   92 (249)
T 3ftd_A           18 GVLKKIAEELNIEEGNTVVEVGGGTGNLTKV-LLQH-P--LKKLYVIELDREMVENLKSI-GDERLEVINEDASKFPFCS   92 (249)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEEESCHHHHHHH-HTTS-C--CSEEEEECCCHHHHHHHTTS-CCTTEEEECSCTTTCCGGG
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcCchHHHHHH-HHHc-C--CCeEEEEECCHHHHHHHHhc-cCCCeEEEEcchhhCChhH
Confidence            4556667777777899999999999999944 4432 1  25999999999999999988 6678999999999877664


Q ss_pred             cccCcEeEEEEcccccc
Q psy11646        100 IFLAKFNKIFSFYCLHW  116 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~  116 (433)
                      .. +.+ .|+++...+.
T Consensus        93 ~~-~~~-~vv~NlPy~i  107 (249)
T 3ftd_A           93 LG-KEL-KVVGNLPYNV  107 (249)
T ss_dssp             SC-SSE-EEEEECCTTT
T ss_pred             cc-CCc-EEEEECchhc
Confidence            22 234 7777777654

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.79  E-value=1.4e-08  Score=100.70  Aligned_cols=141  Identities=17%  Similarity=0.238  Sum_probs=83.9

Q ss_pred             hhhhhhhhhhcHHHH---HHHHHHHHHhcCCCC-----CCEEEEECCCCChhHHHHhc-------ccC------CCCCcE
Q psy11646          4 ATLYETNNSMQQLDA---AKLLSQYIDQFKWTD-----NESVLDVGCGPGNVTSKLLL-------PNL------PKSVVK   62 (433)
Q Consensus         4 a~~Y~~~~~~~~~~~---~~ll~~l~~~l~~~~-----~~~VLDIGcG~G~~~~~~l~-------~~~------~~~~~~   62 (433)
                      +..|++.+..|+...   ..++++.++.+...+     +.+|+|+|||+|..+..++.       ...      +.. .+
T Consensus        15 ~~sY~~nS~~Q~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe-~~   93 (374)
T 3b5i_A           15 QDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPE-FT   93 (374)
T ss_dssp             -----------CTTHHHHHHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCC-EE
T ss_pred             cchHHHhhHHHHHHHHHHHHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCc-ee
Confidence            357888888887644   566776777666543     57899999999999854421       111      122 58


Q ss_pred             EEEEeCCHHHHHHHHhhcCC---------------CCeEEEEecccCCcccccccCcEeEEEEcccccchh---------
Q psy11646         63 LVGLDVSPNMIKHAKNHHTN---------------PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ---------  118 (433)
Q Consensus        63 v~gvDiS~~~l~~A~~~~~~---------------~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~---------  118 (433)
                      +...|+........=+.+..               .+-.|..+.....-...++.++||+|+|+.+|||+.         
T Consensus        94 v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~  173 (374)
T 3b5i_A           94 AFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDR  173 (374)
T ss_dssp             EEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCT
T ss_pred             EEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhcc
Confidence            88888877665433332210               011233333332111113459999999999999986         


Q ss_pred             -----------------------------hHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646        119 -----------------------------DQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus       119 -----------------------------d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                                                   |...+++..++.|+|||+++++..+..
T Consensus       174 ~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~  229 (374)
T 3b5i_A          174 RSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRT  229 (374)
T ss_dssp             TSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECC
T ss_pred             ccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence                                         445568899999999999999987653

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.71  E-value=3.8e-08  Score=93.93  Aligned_cols=95  Identities=14%  Similarity=0.216  Sum_probs=69.4

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES   99 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~   99 (433)
                      .+++.+++.+...++.+|||||||+|.++..++. .......+|+|+|+++.|++.++++. ..+++++++|+.+.++++
T Consensus        29 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~-~~~~~~~~V~avDid~~~l~~a~~~~-~~~v~~i~~D~~~~~~~~  106 (279)
T 3uzu_A           29 GVIDAIVAAIRPERGERMVEIGPGLGALTGPVIA-RLATPGSPLHAVELDRDLIGRLEQRF-GELLELHAGDALTFDFGS  106 (279)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHH-HHCBTTBCEEEEECCHHHHHHHHHHH-GGGEEEEESCGGGCCGGG
T ss_pred             HHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHH-hCCCcCCeEEEEECCHHHHHHHHHhc-CCCcEEEECChhcCChhH
Confidence            3455666667777899999999999999955544 32210024999999999999999884 468999999999887765


Q ss_pred             ccc-C--cEeEEEEcccccc
Q psy11646        100 IFL-A--KFNKIFSFYCLHW  116 (433)
Q Consensus       100 ~~~-~--~fD~Vis~~~l~~  116 (433)
                      ... .  ..+.|+++..++-
T Consensus       107 ~~~~~~~~~~~vv~NlPY~i  126 (279)
T 3uzu_A          107 IARPGDEPSLRIIGNLPYNI  126 (279)
T ss_dssp             GSCSSSSCCEEEEEECCHHH
T ss_pred             hcccccCCceEEEEccCccc
Confidence            322 1  3457888776553

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.70  E-value=3.6e-08  Score=95.12  Aligned_cols=91  Identities=18%  Similarity=0.392  Sum_probs=67.9

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC--CCCeEEEEecccCCc--
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT--NPKLEFVVANIADQN--   96 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~--~~~i~~~~~Di~~~~--   96 (433)
                      +++++++.+..+++.+|||+|||+|..+..+ +...+.  .+|+|+|+|+.|++.|+++..  ..+++++++|+...+  
T Consensus        14 Ll~e~l~~L~~~~g~~vLD~g~G~G~~s~~l-a~~~~~--~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~   90 (301)
T 1m6y_A           14 MVREVIEFLKPEDEKIILDCTVGEGGHSRAI-LEHCPG--CRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFL   90 (301)
T ss_dssp             THHHHHHHHCCCTTCEEEETTCTTSHHHHHH-HHHCTT--CEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHH-HHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHH
Confidence            3445666666778999999999999999544 444443  499999999999999999872  268999999987643  


Q ss_pred             ccccccCcEeEEEEcccc
Q psy11646         97 LESIFLAKFNKIFSFYCL  114 (433)
Q Consensus        97 l~~~~~~~fD~Vis~~~l  114 (433)
                      +......+||.|++...+
T Consensus        91 l~~~g~~~~D~Vl~D~gv  108 (301)
T 1m6y_A           91 LKTLGIEKVDGILMDLGV  108 (301)
T ss_dssp             HHHTTCSCEEEEEEECSC
T ss_pred             HHhcCCCCCCEEEEcCcc
Confidence            111111579999986654

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.67  E-value=2.6e-08  Score=93.77  Aligned_cols=92  Identities=11%  Similarity=0.203  Sum_probs=68.4

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCccc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLE   98 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~   98 (433)
                      .++..+++.+...++.+|||||||+|.++.  ++. ...  .+|+++|+++.|++.++++. ...+++++++|+...+++
T Consensus         8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~--l~~-~~~--~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~   82 (252)
T 1qyr_A            8 FVIDSIVSAINPQKGQAMVEIGPGLAALTE--PVG-ERL--DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFG   82 (252)
T ss_dssp             HHHHHHHHHHCCCTTCCEEEECCTTTTTHH--HHH-TTC--SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHH
T ss_pred             HHHHHHHHhcCCCCcCEEEEECCCCcHHHH--hhh-CCC--CeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHH
Confidence            345566666667788999999999999995  543 211  13999999999999999987 335899999999887665


Q ss_pred             ccc--cCcEeEEEEcccccc
Q psy11646         99 SIF--LAKFNKIFSFYCLHW  116 (433)
Q Consensus        99 ~~~--~~~fD~Vis~~~l~~  116 (433)
                      +..  .+..|.|+++..++-
T Consensus        83 ~~~~~~~~~~~vvsNlPY~i  102 (252)
T 1qyr_A           83 ELAEKMGQPLRVFGNLPYNI  102 (252)
T ss_dssp             HHHHHHTSCEEEEEECCTTT
T ss_pred             HhhcccCCceEEEECCCCCc
Confidence            421  134578888887653

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.62  E-value=6e-08  Score=96.22  Aligned_cols=142  Identities=19%  Similarity=0.224  Sum_probs=89.2

Q ss_pred             hhhhhhhhhhcHHHH---HHHHHHHHHhcCC--CC----CCEEEEECCCCChhHHHHhcc-------cCC-------CCC
Q psy11646          4 ATLYETNNSMQQLDA---AKLLSQYIDQFKW--TD----NESVLDVGCGPGNVTSKLLLP-------NLP-------KSV   60 (433)
Q Consensus         4 a~~Y~~~~~~~~~~~---~~ll~~l~~~l~~--~~----~~~VLDIGcG~G~~~~~~l~~-------~~~-------~~~   60 (433)
                      +..|++.+. |+...   ..++++.+..+..  .+    ..+|+|+||++|..+..++..       ...       ..-
T Consensus        15 ~~sY~~nS~-Q~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe   93 (384)
T 2efj_A           15 DTSYAKNSS-YNLFLIRVKPVLEQCIQELLRANLPNINKCFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPT   93 (384)
T ss_dssp             -CCHHHHCC-TTTTHHHHHHHHHHHHHHHHHTTCTTTTTEEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CE
T ss_pred             hhhHHHhHH-HHHHHHHHHHHHHHHHHHhhhcccCCcCCceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCc
Confidence            456888777 76533   3333333333321  22    578999999999998655443       110       112


Q ss_pred             cEEEEEeCC-----------HHHHHHHHhhcC-CCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHH------
Q psy11646         61 VKLVGLDVS-----------PNMIKHAKNHHT-NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQ------  122 (433)
Q Consensus        61 ~~v~gvDiS-----------~~~l~~A~~~~~-~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~------  122 (433)
                      .+++..|+.           +.+.+.+++..+ ..+-.|..+.....--.-++.+++|+|+|+.+|||+.+.+.      
T Consensus        94 ~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~  173 (384)
T 2efj_A           94 IQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTEL  173 (384)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC-----
T ss_pred             eEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccc
Confidence            588999988           666665544432 12346666655442111134599999999999999854321      


Q ss_pred             ------------------H---------------HHHHHHhccCCCEEEEEeccCCc
Q psy11646        123 ------------------A---------------ISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       123 ------------------~---------------l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                                        +               |+..++.|+|||++++...+...
T Consensus       174 s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pGG~mvl~~~gr~~  230 (384)
T 2efj_A          174 GISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKED  230 (384)
T ss_dssp             -CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCT
T ss_pred             cccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCC
Confidence                              1               56668999999999999876543

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.61  E-value=6.1e-08  Score=96.75  Aligned_cols=102  Identities=19%  Similarity=0.110  Sum_probs=76.6

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCC--eEEEEecccCCccc-ccccCcE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPK--LEFVVANIADQNLE-SIFLAKF  105 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~--i~~~~~Di~~~~l~-~~~~~~f  105 (433)
                      .++.+|||++||+|.++..++... . +..+|+++|+++.+++.+++++   +..+  +++..+|+... +. . ..++|
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~-~-ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~-l~~~-~~~~f  126 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLET-S-CVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFF-LRKE-WGFGF  126 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHC-S-CEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH-HHSC-CSSCE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhC-C-CCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHH-HHHh-hCCCC
Confidence            467899999999999996665532 1 2248999999999999999998   2233  89999998653 21 1 13689


Q ss_pred             eEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        106 NKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       106 D~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |+|++.. .   ......+..+.+.|+|||.++++.
T Consensus       127 D~V~lDP-~---g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          127 DYVDLDP-F---GTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             EEEEECC-S---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cEEEECC-C---cCHHHHHHHHHHHhCCCCEEEEEe
Confidence            9999876 2   123457888899999999887764

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.60  E-value=6.9e-08  Score=100.63  Aligned_cols=120  Identities=17%  Similarity=0.117  Sum_probs=84.5

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCC---------------CcEEEEEeCCHHHHHHHHhhc---CC
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKS---------------VVKLVGLDVSPNMIKHAKNHH---TN   82 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~---------------~~~v~gvDiS~~~l~~A~~~~---~~   82 (433)
                      +...+++.+...++.+|||.|||+|.++..++.......               ...++|+|+++.+++.|+.++   +.
T Consensus       157 iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi  236 (541)
T 2ar0_A          157 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI  236 (541)
T ss_dssp             HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCC
Confidence            334445555556788999999999999855543221110               137999999999999999876   22


Q ss_pred             CC-----eEEEEecccCCcccccccCcEeEEEEcccccchhh--------------HHHHHHHHHHhccCCCEEEEEec
Q psy11646         83 PK-----LEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQD--------------QRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        83 ~~-----i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d--------------~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ..     ..+.++|....+.  ...++||+|+++.++.....              ....+..+.+.|+|||++.++.+
T Consensus       237 ~~~~~~~~~I~~gDtL~~~~--~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p  313 (541)
T 2ar0_A          237 EGNLDHGGAIRLGNTLGSDG--ENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP  313 (541)
T ss_dssp             CCBGGGTBSEEESCTTSHHH--HTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CccccccCCeEeCCCccccc--ccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence            33     6788888654321  12368999999987754321              23678999999999999988764

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.60  E-value=1.1e-08  Score=100.45  Aligned_cols=88  Identities=13%  Similarity=0.184  Sum_probs=61.8

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEE
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFS  110 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis  110 (433)
                      +++|.+|||+||++|.++..++.    .+ .+|+++|+.+ |-....   ..+++++.+.|+.....+.   +.||+|+|
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~----rg-~~V~aVD~~~-l~~~l~---~~~~V~~~~~d~~~~~~~~---~~~D~vvs  276 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVK----RN-MWVYSVDNGP-MAQSLM---DTGQVTWLREDGFKFRPTR---SNISWMVC  276 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHH----TT-CEEEEECSSC-CCHHHH---TTTCEEEECSCTTTCCCCS---SCEEEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHH----CC-CEEEEEEhhh-cChhhc---cCCCeEEEeCccccccCCC---CCcCEEEE
Confidence            46899999999999999954443    23 5999999874 323222   3378999999987765443   68999999


Q ss_pred             cccccchhhHHHHHHHHHHhccCC
Q psy11646        111 FYCLHWVQDQRQAISNIYNLLMPG  134 (433)
Q Consensus       111 ~~~l~~~~d~~~~l~~i~~~LkpG  134 (433)
                      -.+.+    +..+..-+.++|..|
T Consensus       277 Dm~~~----p~~~~~l~~~wl~~~  296 (375)
T 4auk_A          277 DMVEK----PAKVAALMAQWLVNG  296 (375)
T ss_dssp             CCSSC----HHHHHHHHHHHHHTT
T ss_pred             cCCCC----hHHhHHHHHHHHhcc
Confidence            77654    344555555555544

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.57  E-value=4.8e-08  Score=96.14  Aligned_cols=144  Identities=15%  Similarity=0.120  Sum_probs=96.6

Q ss_pred             chhhhhhhhhhcHHHHHH---HHHHHHHhcCC----CCCCEEEEECCCCChhHHHHhccc-----------C--CCCCcE
Q psy11646          3 KATLYETNNSMQQLDAAK---LLSQYIDQFKW----TDNESVLDVGCGPGNVTSKLLLPN-----------L--PKSVVK   62 (433)
Q Consensus         3 ~a~~Y~~~~~~~~~~~~~---ll~~l~~~l~~----~~~~~VLDIGcG~G~~~~~~l~~~-----------~--~~~~~~   62 (433)
                      -+..|++.+..|+.....   ++++.+..+..    ....+|+|+||++|..+..++...           .  +..-.+
T Consensus        14 G~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~   93 (359)
T 1m6e_X           14 GENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQ   93 (359)
T ss_dssp             TSTTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEE
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceE
Confidence            356689988888875543   44444443322    234679999999999885444330           0  111268


Q ss_pred             EEEEeCCHHHHHHHHhhcCC----CCeEEEEecccCCcccccccCcEeEEEEcccccchhhH------------------
Q psy11646         63 LVGLDVSPNMIKHAKNHHTN----PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQ------------------  120 (433)
Q Consensus        63 v~gvDiS~~~l~~A~~~~~~----~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~------------------  120 (433)
                      |+..|+.......+-+.+..    .+-.|..+.....--.-++.+++|+|+|+.+|||+.+.                  
T Consensus        94 v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p  173 (359)
T 1m6e_X           94 IFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCP  173 (359)
T ss_dssp             EEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSC
T ss_pred             EEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCC
Confidence            99999999998888777621    13456666544421111344999999999999998542                  


Q ss_pred             ---------------HHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        121 ---------------RQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       121 ---------------~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                                     ...|+..++.|+|||++++...+...
T Consensus       174 ~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~gr~~  214 (359)
T 1m6e_X          174 QSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRS  214 (359)
T ss_dssp             CTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecCCC
Confidence                           23388889999999999999876543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.55  E-value=1.8e-07  Score=93.18  Aligned_cols=100  Identities=12%  Similarity=0.010  Sum_probs=74.6

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--C---------------C-CCeEEEEecccC
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--T---------------N-PKLEFVVANIAD   94 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~---------------~-~~i~~~~~Di~~   94 (433)
                      ++.+|||+|||+|..+..++. ..+.  .+|+++|+++.+++.|+++.  .               . .++++.++|+..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~-~~~~--~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~  123 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFAL-ETPA--EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANR  123 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHH-HSSC--SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHH
T ss_pred             CCCEEEECCCchhHHHHHHHH-hCCC--CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHH
Confidence            578999999999999965554 3333  48999999999999999987  2               2 238889999865


Q ss_pred             CcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         95 QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        95 ~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      . +. ...++||+|+.... .   .....+..+.+.|+|||.++++.
T Consensus       124 ~-~~-~~~~~fD~I~lDP~-~---~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          124 L-MA-ERHRYFHFIDLDPF-G---SPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             H-HH-HSTTCEEEEEECCS-S---CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             H-HH-hccCCCCEEEeCCC-C---CHHHHHHHHHHhcCCCCEEEEEe
Confidence            3 11 11357999996542 1   23567888899999999877754

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.47  E-value=7.2e-07  Score=95.77  Aligned_cols=121  Identities=15%  Similarity=0.207  Sum_probs=83.5

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccC--CCC-------------------------------------C
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNL--PKS-------------------------------------V   60 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~--~~~-------------------------------------~   60 (433)
                      .+...++....+.++.+|||.+||+|.++..++....  +++                                     .
T Consensus       177 ~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~  256 (703)
T 3v97_A          177 TLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS  256 (703)
T ss_dssp             HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence            4455566677788889999999999999865543211  010                                     0


Q ss_pred             cEEEEEeCCHHHHHHHHhhc---CC-CCeEEEEecccCCcccccccCcEeEEEEcccccc-h---hhHHHH---HHHHHH
Q psy11646         61 VKLVGLDVSPNMIKHAKNHH---TN-PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHW-V---QDQRQA---ISNIYN  129 (433)
Q Consensus        61 ~~v~gvDiS~~~l~~A~~~~---~~-~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~-~---~d~~~~---l~~i~~  129 (433)
                      .+++|+|+++.|++.|++++   +. ..+++.++|+.+...+ ...++||+|+++..+.. +   .+....   +.++.+
T Consensus       257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~-~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk  335 (703)
T 3v97_A          257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNP-LPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMK  335 (703)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCS-CTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHH
T ss_pred             ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccc-cccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHH
Confidence            37999999999999999998   22 3489999999875322 11248999999987642 1   233334   444455


Q ss_pred             hccCCCEEEEEe
Q psy11646        130 LLMPGGEVLLLL  141 (433)
Q Consensus       130 ~LkpGG~lll~~  141 (433)
                      .+.|||.+++..
T Consensus       336 ~~~~g~~~~ilt  347 (703)
T 3v97_A          336 NQFGGWNLSLFS  347 (703)
T ss_dssp             HHCTTCEEEEEE
T ss_pred             hhCCCCeEEEEe
Confidence            556899988874

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.41  E-value=8.5e-07  Score=92.22  Aligned_cols=111  Identities=14%  Similarity=0.146  Sum_probs=79.6

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC--CCeEEEEecccCCcccccccCcEe
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN--PKLEFVVANIADQNLESIFLAKFN  106 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~--~~i~~~~~Di~~~~l~~~~~~~fD  106 (433)
                      .++.+|+|.+||+|.++..++..........++|+|+++.++..|+.++   +.  .++.+.++|......+.....+||
T Consensus       220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD  299 (542)
T 3lkd_A          220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD  299 (542)
T ss_dssp             CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred             CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence            4688999999999999855544322112258999999999999999876   22  467889998765422222347899


Q ss_pred             EEEEccccc--ch------hh---------------HHHHHHHHHHhcc-CCCEEEEEec
Q psy11646        107 KIFSFYCLH--WV------QD---------------QRQAISNIYNLLM-PGGEVLLLLN  142 (433)
Q Consensus       107 ~Vis~~~l~--~~------~d---------------~~~~l~~i~~~Lk-pGG~lll~~~  142 (433)
                      +|+++.++.  |-      .+               .-..+..+.+.|+ |||++.++.+
T Consensus       300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP  359 (542)
T 3lkd_A          300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP  359 (542)
T ss_dssp             EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred             EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence            999987663  10      01               0136899999999 9999988764

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.40  E-value=8.3e-07  Score=93.34  Aligned_cols=101  Identities=13%  Similarity=0.154  Sum_probs=68.9

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCC-CCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPK-SVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~-~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      .+..|||||||+|-+....+...... ...+|+++|-|+ +...|++..    ...+|+++.+|+++..++    +++|+
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP----EKVDI  431 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAP----EKADI  431 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCS----SCEEE
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCC----cccCE
Confidence            34579999999998853332211111 113789999998 555666554    457899999999998766    79999


Q ss_pred             EEEccc--ccchhhHHHHHHHHHHhccCCCEEE
Q psy11646        108 IFSFYC--LHWVQDQRQAISNIYNLLMPGGEVL  138 (433)
Q Consensus       108 Vis~~~--l~~~~d~~~~l~~i~~~LkpGG~ll  138 (433)
                      |+|=..  +-.-+....++....+.|||||.++
T Consensus       432 IVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          432 IVSELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             EECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            998321  1111223457778889999999864

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.39  E-value=1.4e-07  Score=88.94  Aligned_cols=80  Identities=16%  Similarity=0.220  Sum_probs=59.2

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCH-------HHHHHHHhhc---C-CCCeEEEEecccCCcccc
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSP-------NMIKHAKNHH---T-NPKLEFVVANIADQNLES   99 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~-------~~l~~A~~~~---~-~~~i~~~~~Di~~~~l~~   99 (433)
                      ..++.+|||+|||+|..+. .++..   + .+|+|+|+|+       .+++.|+++.   + ..+++++++|+.+. ++.
T Consensus        81 ~~~~~~VLDlgcG~G~~a~-~lA~~---g-~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~-l~~  154 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSF-VLASL---G-LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQ-MPA  154 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHH-HHHHT---T-CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHH-HHH
T ss_pred             cCCcCeEEEeeCccCHHHH-HHHHh---C-CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHH-HHh
Confidence            3567899999999999994 44432   2 4899999999       9999998775   1 13599999998763 222


Q ss_pred             ccc--CcEeEEEEcccccc
Q psy11646        100 IFL--AKFNKIFSFYCLHW  116 (433)
Q Consensus       100 ~~~--~~fD~Vis~~~l~~  116 (433)
                      ..+  ++||+|++..++++
T Consensus       155 ~~~~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          155 LVKTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHHHHCCCSEEEECCCC--
T ss_pred             hhccCCCccEEEECCCCCC
Confidence            222  68999999887765

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.32  E-value=9e-06  Score=77.60  Aligned_cols=105  Identities=13%  Similarity=0.178  Sum_probs=78.6

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--------CCCCeEEEEecccCCccccccc
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--------TNPKLEFVVANIADQNLESIFL  102 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--------~~~~i~~~~~Di~~~~l~~~~~  102 (433)
                      ++...+||=||.|.|..+..+++ ..+-  .+++.+||++..++.|++.+        ..++++++.+|.... +. ...
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk-~~~v--~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~-l~-~~~  155 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTR-HKNV--ESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNF-VN-QTS  155 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHT-CTTC--CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTT-TS-CSS
T ss_pred             CCCCCeEEEECCCchHHHHHHHH-cCCc--ceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHH-Hh-hcc
Confidence            35578999999999999966654 3222  48999999999999999876        257999999998765 32 234


Q ss_pred             CcEeEEEEcccccch--h--hHHHHHHHHHHhccCCCEEEEE
Q psy11646        103 AKFNKIFSFYCLHWV--Q--DQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~--~--d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      ++||+|+.-..=..-  .  -....++.+++.|+|||.++..
T Consensus       156 ~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q  197 (294)
T 3o4f_A          156 QTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ  197 (294)
T ss_dssp             CCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred             ccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence            789999974321110  0  1246789999999999998865

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.30  E-value=6.8e-07  Score=89.46  Aligned_cols=76  Identities=12%  Similarity=0.114  Sum_probs=58.5

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC-----CCCeEEEEecccCCcccccccCcEeE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT-----NPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~-----~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      ++.+|||+|||+|..+. .+++.    +.+|+++|+|+.|++.|++++.     ..+++++++|+.+. ++....++||+
T Consensus        93 ~g~~VLDLgcG~G~~al-~LA~~----g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~-L~~~~~~~fDv  166 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFI-ALMSK----ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEY-LPLIKTFHPDY  166 (410)
T ss_dssp             TTCEEEESSCSSSHHHH-HHHTT----CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGS-HHHHHHHCCSE
T ss_pred             CCCEEEEeCCCchHHHH-HHHhc----CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHh-hhhccCCCceE
Confidence            58899999999999984 44432    2599999999999999999871     25799999998764 22212258999


Q ss_pred             EEEcccc
Q psy11646        108 IFSFYCL  114 (433)
Q Consensus       108 Vis~~~l  114 (433)
                      |++....
T Consensus       167 V~lDPPr  173 (410)
T 3ll7_A          167 IYVDPAR  173 (410)
T ss_dssp             EEECCEE
T ss_pred             EEECCCC
Confidence            9996543

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.21  E-value=4.5e-06  Score=78.80  Aligned_cols=89  Identities=19%  Similarity=0.272  Sum_probs=68.2

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc--cc
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN--LE   98 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~--l~   98 (433)
                      +++++++.+..+++..+||.+||.|..+..++..   .  .+|+|+|.++.+++.|++ +...++++++++.....  +.
T Consensus        10 Ll~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~---~--g~VigiD~Dp~Ai~~A~~-L~~~rv~lv~~~f~~l~~~L~   83 (285)
T 1wg8_A           10 LYQEALDLLAVRPGGVYVDATLGGAGHARGILER---G--GRVIGLDQDPEAVARAKG-LHLPGLTVVQGNFRHLKRHLA   83 (285)
T ss_dssp             THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT---T--CEEEEEESCHHHHHHHHH-TCCTTEEEEESCGGGHHHHHH
T ss_pred             HHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC---C--CEEEEEeCCHHHHHHHHh-hccCCEEEEECCcchHHHHHH
Confidence            3556677777788999999999999999666653   2  499999999999999999 74368999999988642  12


Q ss_pred             ccccCcEeEEEEccccc
Q psy11646         99 SIFLAKFNKIFSFYCLH  115 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~  115 (433)
                      ....+++|.|++...+.
T Consensus        84 ~~g~~~vDgIL~DLGvS  100 (285)
T 1wg8_A           84 ALGVERVDGILADLGVS  100 (285)
T ss_dssp             HTTCSCEEEEEEECSCC
T ss_pred             HcCCCCcCEEEeCCccc
Confidence            11225799999865543

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.19  E-value=3.1e-06  Score=89.03  Aligned_cols=105  Identities=15%  Similarity=0.145  Sum_probs=70.5

Q ss_pred             CCEEEEECCCCChhHHHHhcccC--C--------CCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccc-
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNL--P--------KSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLES-   99 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~--~--------~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~-   99 (433)
                      +..|||||||+|-++...+....  .        ....+|+++|.|+.+...++.+.   ...+|+++.+|+++..++. 
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~  489 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK  489 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence            45799999999999633222110  0        01148999999997776655543   3467999999999876630 


Q ss_pred             -cccCcEeEEEEcccccch--hhHHHHHHHHHHhccCCCEEE
Q psy11646        100 -IFLAKFNKIFSFYCLHWV--QDQRQAISNIYNLLMPGGEVL  138 (433)
Q Consensus       100 -~~~~~fD~Vis~~~l~~~--~d~~~~l~~i~~~LkpGG~ll  138 (433)
                       ...++.|+|+|=..=...  +-....+..+.+.|||||.++
T Consensus       490 ~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          490 DRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             cCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence             113789999995432111  223457777789999999765

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.17  E-value=1.3e-06  Score=90.94  Aligned_cols=119  Identities=13%  Similarity=0.073  Sum_probs=77.9

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccC---C--C-------CCcEEEEEeCCHHHHHHHHhhc---C-CCC
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNL---P--K-------SVVKLVGLDVSPNMIKHAKNHH---T-NPK   84 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~---~--~-------~~~~v~gvDiS~~~l~~A~~~~---~-~~~   84 (433)
                      +...+++.+...++ +|||.+||+|.++..++....   +  .       ....++|+|+++.++..|+.++   + ..+
T Consensus       233 Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~  311 (544)
T 3khk_A          233 IVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFN  311 (544)
T ss_dssp             HHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCB
T ss_pred             HHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcc
Confidence            34444444444444 999999999999855432110   0  0       0148999999999999999876   2 123


Q ss_pred             eEEEEecccCCcccccccCcEeEEEEcccccch---h-------------------------h-HHHHHHHHHHhccCCC
Q psy11646         85 LEFVVANIADQNLESIFLAKFNKIFSFYCLHWV---Q-------------------------D-QRQAISNIYNLLMPGG  135 (433)
Q Consensus        85 i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~---~-------------------------d-~~~~l~~i~~~LkpGG  135 (433)
                      +.+.++|....+  .....+||+|+++.++..-   .                         + .-..+..+.+.|+|||
T Consensus       312 i~i~~gDtL~~~--~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gG  389 (544)
T 3khk_A          312 FGKKNADSFLDD--QHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTG  389 (544)
T ss_dssp             CCSSSCCTTTSC--SCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEE
T ss_pred             cceeccchhcCc--ccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCc
Confidence            333566644322  1223789999998877531   0                         0 1157889999999999


Q ss_pred             EEEEEec
Q psy11646        136 EVLLLLN  142 (433)
Q Consensus       136 ~lll~~~  142 (433)
                      ++.++.+
T Consensus       390 r~aiVlP  396 (544)
T 3khk_A          390 SMALLLA  396 (544)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEec
Confidence            9888764

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.17  E-value=3e-05  Score=69.98  Aligned_cols=109  Identities=11%  Similarity=0.069  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C---CCCeEEEE
Q psy11646         16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T---NPKLEFVV   89 (433)
Q Consensus        16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~---~~~i~~~~   89 (433)
                      +...++|...+     .+..+|||+|||  ..+ .++++. +.  .+|+.+|.+++..+.|++++   +   ..+++++.
T Consensus        18 ~~~~~~L~~~l-----~~a~~VLEiGtG--yST-l~lA~~-~~--g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~   86 (202)
T 3cvo_A           18 PAEAEALRMAY-----EEAEVILEYGSG--GST-VVAAEL-PG--KHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVW   86 (202)
T ss_dssp             HHHHHHHHHHH-----HHCSEEEEESCS--HHH-HHHHTS-TT--CEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEE
T ss_pred             HHHHHHHHHHh-----hCCCEEEEECch--HHH-HHHHHc-CC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEE
Confidence            34445555433     246799999985  455 455543 33  49999999999999999887   2   45799999


Q ss_pred             ecccCCc-------------ccc-------c-ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646         90 ANIADQN-------------LES-------I-FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        90 ~Di~~~~-------------l~~-------~-~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +|+....             ++.       . ..++||+|+.-.-.     ....+..+.++|+|||.+++-
T Consensus        87 gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k-----~~~~~~~~l~~l~~GG~Iv~D  153 (202)
T 3cvo_A           87 TDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF-----RVGCALATAFSITRPVTLLFD  153 (202)
T ss_dssp             CCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSS-----HHHHHHHHHHHCSSCEEEEET
T ss_pred             eCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCC-----chhHHHHHHHhcCCCeEEEEe
Confidence            9965420             111       0 12689999987642     124455677999999998653

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.15  E-value=1.8e-05  Score=84.47  Aligned_cols=109  Identities=10%  Similarity=0.081  Sum_probs=72.2

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCC-CCCcEEEEEeCCHHHHHHH--HhhcC-------CCCeEEEEecccCCcccccc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLP-KSVVKLVGLDVSPNMIKHA--KNHHT-------NPKLEFVVANIADQNLESIF  101 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~-~~~~~v~gvDiS~~~l~~A--~~~~~-------~~~i~~~~~Di~~~~l~~~~  101 (433)
                      .++.+|||.|||+|.++..++. ..+ ....+++|+|+++.+++.|  +.+..       .....+...|+...  ....
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~-~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~--~~~~  396 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSA-GFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSL--NPED  396 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHH-TSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGC--CGGG
T ss_pred             CCCCEEEECCCCccHHHHHHHH-HhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcc--cccc
Confidence            4688999999999999855443 332 1124799999999999999  44331       11224444444331  1122


Q ss_pred             cCcEeEEEEcccccc---hh----h----------------------HHHHHHHHHHhccCCCEEEEEecc
Q psy11646        102 LAKFNKIFSFYCLHW---VQ----D----------------------QRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       102 ~~~fD~Vis~~~l~~---~~----d----------------------~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      .++||+|+++..+..   ..    +                      ....+..+.++|+|||++.+..+.
T Consensus       397 ~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~  467 (878)
T 3s1s_A          397 FANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK  467 (878)
T ss_dssp             GTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred             cCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence            378999999988732   10    0                      123577889999999999988654

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.15  E-value=7.4e-06  Score=80.65  Aligned_cols=113  Identities=17%  Similarity=0.129  Sum_probs=80.2

Q ss_pred             cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C------CCCeEEEEecccCCcccc
Q psy11646         29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T------NPKLEFVVANIADQNLES   99 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~------~~~i~~~~~Di~~~~l~~   99 (433)
                      +..+||.+|||+++|+|.-+..++ .....  ..++++|+++.-++..++++   .      ..++.+...|....  ..
T Consensus       144 L~~~pg~~VLD~CAaPGGKT~~la-~~~~~--~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~--~~  218 (359)
T 4fzv_A          144 LGLQPGDIVLDLCAAPGGKTLALL-QTGCC--RNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKW--GE  218 (359)
T ss_dssp             HCCCTTEEEEESSCTTCHHHHHHH-HTTCE--EEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGH--HH
T ss_pred             hCCCCCCEEEEecCCccHHHHHHH-HhcCC--CcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhc--ch
Confidence            456789999999999999985544 44333  38999999999988887765   1      14677777776653  22


Q ss_pred             cccCcEeEEEEccccc--------------ch--h--------hHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        100 IFLAKFNKIFSFYCLH--------------WV--Q--------DQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~--------------~~--~--------d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      ...+.||.|++-....              +.  .        -+...+.+..++|||||+|+-++.+..+
T Consensus       219 ~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~  289 (359)
T 4fzv_A          219 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSH  289 (359)
T ss_dssp             HSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCT
T ss_pred             hccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCch
Confidence            3347899999732211              10  0        1346788899999999999998876554

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.10  E-value=1.1e-06  Score=82.61  Aligned_cols=103  Identities=11%  Similarity=0.089  Sum_probs=66.0

Q ss_pred             HHHhcCCCCC--CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhh-------cC----C-CCeEEEEe
Q psy11646         25 YIDQFKWTDN--ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH-------HT----N-PKLEFVVA   90 (433)
Q Consensus        25 l~~~l~~~~~--~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~-------~~----~-~~i~~~~~   90 (433)
                      +.+.+..+++  .+|||+|||+|..+..+ +..   + .+|+++|+++.+.+.+++.       ..    . .+++++++
T Consensus        78 l~~al~l~~g~~~~VLDl~~G~G~dal~l-A~~---g-~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~  152 (258)
T 2oyr_A           78 VAKAVGIKGDYLPDVVDATAGLGRDAFVL-ASV---G-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA  152 (258)
T ss_dssp             HHHHTTCBTTBCCCEEETTCTTCHHHHHH-HHH---T-CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES
T ss_pred             HHHHhcccCCCCCEEEEcCCcCCHHHHHH-HHc---C-CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEEC
Confidence            3444445566  89999999999999444 433   3 4899999999764444433       21    1 46899999


Q ss_pred             cccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCC
Q psy11646         91 NIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGG  135 (433)
Q Consensus        91 Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG  135 (433)
                      |..+. ++. ..++||+|++..++.+-. ...++++..+.|++.+
T Consensus       153 D~~~~-L~~-~~~~fDvV~lDP~y~~~~-~saavkk~~~~lr~l~  194 (258)
T 2oyr_A          153 SSLTA-LTD-ITPRPQVVYLDPMFPHKQ-KSALVKKEMRVFQSLV  194 (258)
T ss_dssp             CHHHH-STT-CSSCCSEEEECCCCCCCC-C-----HHHHHHHHHS
T ss_pred             CHHHH-HHh-CcccCCEEEEcCCCCCcc-cchHHHHHHHHHHHhh
Confidence            98763 221 124799999998886632 2345566666776544

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.92  E-value=1.9e-05  Score=73.13  Aligned_cols=116  Identities=9%  Similarity=0.056  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC-CCe---EEEEe-cc
Q psy11646         18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN-PKL---EFVVA-NI   92 (433)
Q Consensus        18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~-~~i---~~~~~-Di   92 (433)
                      +.-.|.++-++.-++|+.+|||+||++|.|+ ..++...+-  ..|.|.++.... . ....... .++   .|.++ |+
T Consensus        58 AayKL~EIdeK~likpg~~VVDLGaAPGGWS-QvAa~~~~v--g~V~G~vig~D~-~-~~P~~~~~~Gv~~i~~~~G~Df  132 (269)
T 2px2_A           58 GTAKLRWLVERRFVQPIGKVVDLGCGRGGWS-YYAATMKNV--QEVRGYTKGGPG-H-EEPMLMQSYGWNIVTMKSGVDV  132 (269)
T ss_dssp             HHHHHHHHHHTTSCCCCEEEEEETCTTSHHH-HHHTTSTTE--EEEEEECCCSTT-S-CCCCCCCSTTGGGEEEECSCCG
T ss_pred             HHHHHHHHHHcCCCCCCCEEEEcCCCCCHHH-HHHhhhcCC--CCceeEEEcccc-c-cCCCcccCCCceEEEeeccCCc
Confidence            3444556776665689999999999999999 666554111  133444443321 0 0000011 344   44446 88


Q ss_pred             cCCcccccccCcEeEEEEccccc---chhhHH---HHHHHHHHhccCCC-EEEEEecc
Q psy11646         93 ADQNLESIFLAKFNKIFSFYCLH---WVQDQR---QAISNIYNLLMPGG-EVLLLLNA  143 (433)
Q Consensus        93 ~~~~l~~~~~~~fD~Vis~~~l~---~~~d~~---~~l~~i~~~LkpGG-~lll~~~~  143 (433)
                      ...  .   ...+|+|+|-.+=.   ..-|..   .++.-+.++|+||| .+++=.+.
T Consensus       133 ~~~--~---~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq  185 (269)
T 2px2_A          133 FYK--P---SEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC  185 (269)
T ss_dssp             GGS--C---CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             cCC--C---CCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence            763  2   25799999944221   111221   25777779999999 88776554

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.91  E-value=1.2e-05  Score=75.57  Aligned_cols=107  Identities=16%  Similarity=0.180  Sum_probs=68.5

Q ss_pred             CCCCEEEEECCCCChhHHHHhccc------CCCC---CcEEEEEeCCH---HHHH-----------HHHhhc--------
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPN------LPKS---VVKLVGLDVSP---NMIK-----------HAKNHH--------   80 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~------~~~~---~~~v~gvDiS~---~~l~-----------~A~~~~--------   80 (433)
                      +++.+|||||+|+|..+..+++..      .|.+   ..+++++|..|   +++.           .|++..        
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            356799999999999885544322      3432   25899999876   4444           344432        


Q ss_pred             -------C--CCCeEEEEecccCCccccccc---CcEeEEEEcc-cccchhh--HHHHHHHHHHhccCCCEEEE
Q psy11646         81 -------T--NPKLEFVVANIADQNLESIFL---AKFNKIFSFY-CLHWVQD--QRQAISNIYNLLMPGGEVLL  139 (433)
Q Consensus        81 -------~--~~~i~~~~~Di~~~~l~~~~~---~~fD~Vis~~-~l~~~~d--~~~~l~~i~~~LkpGG~lll  139 (433)
                             .  ..++++..+|+.+. ++....   ..||+|+.-. .-...++  ...++..+.++|+|||+++.
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~-l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINEL-ISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHH-GGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             chhheeccCCceEEEEEECcHHHH-HhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence                   1  13567888887663 332211   3799999843 1111122  35789999999999998773

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.87  E-value=7.9e-05  Score=77.32  Aligned_cols=123  Identities=13%  Similarity=0.051  Sum_probs=82.7

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCC----------CcEEEEEeCCHHHHHHHHhhc---CCCCeE
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKS----------VVKLVGLDVSPNMIKHAKNHH---TNPKLE   86 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~----------~~~v~gvDiS~~~l~~A~~~~---~~~~i~   86 (433)
                      .+...+++.+...++.+|+|-+||+|.+...+........          ...++|+|+++.+...|+-+.   +.....
T Consensus       204 ~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~  283 (530)
T 3ufb_A          204 PVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPR  283 (530)
T ss_dssp             HHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCE
T ss_pred             HHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcccc
Confidence            4555556666667888999999999999855543221111          136999999999999998766   444455


Q ss_pred             EEEecccCCcccc-cccCcEeEEEEcccccch--h-------------h-HHHHHHHHHHhcc-------CCCEEEEEec
Q psy11646         87 FVVANIADQNLES-IFLAKFNKIFSFYCLHWV--Q-------------D-QRQAISNIYNLLM-------PGGEVLLLLN  142 (433)
Q Consensus        87 ~~~~Di~~~~l~~-~~~~~fD~Vis~~~l~~~--~-------------d-~~~~l~~i~~~Lk-------pGG~lll~~~  142 (433)
                      +..+|....+... ....+||+|+++.++..-  .             + ....+..+.+.||       |||++.++.+
T Consensus       284 I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP  363 (530)
T 3ufb_A          284 IDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP  363 (530)
T ss_dssp             EECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred             ccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence            6677765443332 233679999999887421  0             1 1234667777776       7999988765

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.80  E-value=5.6e-05  Score=72.98  Aligned_cols=93  Identities=16%  Similarity=0.253  Sum_probs=70.8

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc--cc
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN--LE   98 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~--l~   98 (433)
                      ++.+.++.+..+|+..++|..||.|..+..++....+.+  +|+|+|.++.+++.|+ ++...++++++++.....  +.
T Consensus        45 Ll~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~G--rVig~D~Dp~Al~~A~-rL~~~Rv~lv~~nF~~l~~~L~  121 (347)
T 3tka_A           45 LLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEG--RLLAIDRDPQAIAVAK-TIDDPRFSIIHGPFSALGEYVA  121 (347)
T ss_dssp             TTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTC--EEEEEESCHHHHHHHT-TCCCTTEEEEESCGGGHHHHHH
T ss_pred             cHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCC--EEEEEECCHHHHHHHH-hhcCCcEEEEeCCHHHHHHHHH
Confidence            667888888889999999999999999966665444555  9999999999999995 554578999999887642  11


Q ss_pred             c-cccCcEeEEEEcccccc
Q psy11646         99 S-IFLAKFNKIFSFYCLHW  116 (433)
Q Consensus        99 ~-~~~~~fD~Vis~~~l~~  116 (433)
                      . ...+++|.|+....+..
T Consensus       122 ~~g~~~~vDgILfDLGVSS  140 (347)
T 3tka_A          122 ERDLIGKIDGILLDLGVSS  140 (347)
T ss_dssp             HTTCTTCEEEEEEECSCCH
T ss_pred             hcCCCCcccEEEECCccCH
Confidence            1 11136999998766543

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.78  E-value=8e-05  Score=70.80  Aligned_cols=118  Identities=13%  Similarity=0.115  Sum_probs=78.2

Q ss_pred             HHHHHHHhcC-CCCCCEEEEECCCCChhHHHHhcccCCC---CCcEEEEEeCCHH-------------------------
Q psy11646         21 LLSQYIDQFK-WTDNESVLDVGCGPGNVTSKLLLPNLPK---SVVKLVGLDVSPN-------------------------   71 (433)
Q Consensus        21 ll~~l~~~l~-~~~~~~VLDIGcG~G~~~~~~l~~~~~~---~~~~v~gvDiS~~-------------------------   71 (433)
                      .|..+++.+. ...+++|||+|+..|..+. .++..++.   ...+++++|..+.                         
T Consensus        93 ~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai-~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~  171 (282)
T 2wk1_A           93 NIRQCVEDVIGNNVPGDLVETGVWRGGACI-LMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLA  171 (282)
T ss_dssp             HHHHHHHHHHHTTCCCEEEEECCTTSHHHH-HHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHC
T ss_pred             HHHHHHHHHHhcCCCCcEEEeecCchHHHH-HHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccch
Confidence            3344444332 2346699999999999884 44433321   0148999996421                         


Q ss_pred             -HHHHHHhhc---C--CCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         72 -MIKHAKNHH---T--NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        72 -~l~~A~~~~---~--~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                       .++.+++++   +  ..+++++.+|+.+. ++....++||+|+.-.-.  -+.....+..+...|+|||.+++-..
T Consensus       172 ~~~~~ar~n~~~~gl~~~~I~li~Gda~et-L~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          172 VSEEEVRRNFRNYDLLDEQVRFLPGWFKDT-LPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             CCHHHHHHHHHHTTCCSTTEEEEESCHHHH-STTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             hHHHHHHHHHHHcCCCcCceEEEEeCHHHH-HhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEEcCC
Confidence             355667666   2  37899999998653 444334789999987643  23345788999999999998887543

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.66  E-value=1.2e-05  Score=97.22  Aligned_cols=108  Identities=19%  Similarity=0.143  Sum_probs=56.4

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCC--CCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC-cccccccCcEeEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLP--KSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ-NLESIFLAKFNKI  108 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~--~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~-~l~~~~~~~fD~V  108 (433)
                      ++..+|||||.|+|..+..++..+..  ..+.+|+.+|+|+...+.|++++..-.++....|..+. ++   ..++||+|
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~---~~~~ydlv 1315 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPG---SLGKADLL 1315 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC--------CCEE
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccC---CCCceeEE
Confidence            36789999999999887554443321  12358999999999888888776211222222233221 11   22679999


Q ss_pred             EEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646        109 FSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       109 is~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ++.+++|..++....+.+++++|||||.+++...
T Consensus      1316 ia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1316 VCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             EEECC--------------------CCEEEEEEC
T ss_pred             EEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence            9999999988999999999999999999988653

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.65  E-value=0.00018  Score=70.78  Aligned_cols=103  Identities=12%  Similarity=0.108  Sum_probs=74.3

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC-----------CCCeEEEEecccCCcccc--
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT-----------NPKLEFVVANIADQNLES--   99 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~-----------~~~i~~~~~Di~~~~l~~--   99 (433)
                      ++.+||=||.|.|..+..+++.  +.  .+++.+||++..++.|++.+.           .++++++..|.... +..  
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh--~~--~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~f-l~~~~  279 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKL--KP--KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPV-LKRYA  279 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTT--CC--SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHH-HHHHH
T ss_pred             CCCeEEEECCCcHHHHHHHHhc--CC--ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHH-HHhhh
Confidence            5689999999999999666653  22  489999999999999998751           14578888887653 221  


Q ss_pred             cccCcEeEEEEccccc-------chh---hHHHHHHHHHHhccCCCEEEEE
Q psy11646        100 IFLAKFNKIFSFYCLH-------WVQ---DQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~-------~~~---d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      ...++||+|+.-..-.       ...   -....++.+++.|+|||.++..
T Consensus       280 ~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q  330 (381)
T 3c6k_A          280 KEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ  330 (381)
T ss_dssp             HHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             hccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            1236899999753211       110   1246788999999999998765

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.62  E-value=0.00011  Score=62.31  Aligned_cols=102  Identities=19%  Similarity=0.192  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCC-hhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc
Q psy11646         18 AAKLLSQYIDQFKWTDNESVLDVGCGPG-NVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN   96 (433)
Q Consensus        18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G-~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~   96 (433)
                      .+.+.+.+.+..  .++.+|||||||+| ..+ ..|+..   .+..|+++|+++.+++            +++.|+.+..
T Consensus        22 ~e~LaeYI~~~~--~~~~rVlEVG~G~g~~vA-~~La~~---~g~~V~atDInp~Av~------------~v~dDiF~P~   83 (153)
T 2k4m_A           22 WNDLAVYIIRCS--GPGTRVVEVGAGRFLYVS-DYIRKH---SKVDLVLTDIKPSHGG------------IVRDDITSPR   83 (153)
T ss_dssp             HHHHHHHHHHHS--CSSSEEEEETCTTCCHHH-HHHHHH---SCCEEEEECSSCSSTT------------EECCCSSSCC
T ss_pred             HHHHHHHHHhcC--CCCCcEEEEccCCChHHH-HHHHHh---CCCeEEEEECCccccc------------eEEccCCCCc
Confidence            334444444444  45679999999999 477 556532   2258999999997544            7778887632


Q ss_pred             ccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646         97 LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        97 l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      +.  .-+.||+|.++..=.   +....+.++.+..  |.-+++..++.
T Consensus        84 ~~--~Y~~~DLIYsirPP~---El~~~i~~lA~~v--~adliI~pL~~  124 (153)
T 2k4m_A           84 ME--IYRGAALIYSIRPPA---EIHSSLMRVADAV--GARLIIKPLTG  124 (153)
T ss_dssp             HH--HHTTEEEEEEESCCT---TTHHHHHHHHHHH--TCEEEEECBTT
T ss_pred             cc--ccCCcCEEEEcCCCH---HHHHHHHHHHHHc--CCCEEEEcCCC
Confidence            21  114899998876632   3444555555544  45677765443

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.39  E-value=0.00031  Score=67.30  Aligned_cols=55  Identities=20%  Similarity=0.283  Sum_probs=44.4

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH   80 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~   80 (433)
                      .+++.++.... .++..|||++||+|..+..++.    .+ .+++|+|+++.+++.|++++
T Consensus       223 ~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~----~g-~~~~g~e~~~~~~~~a~~r~  277 (297)
T 2zig_A          223 ELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAAR----WG-RRALGVELVPRYAQLAKERF  277 (297)
T ss_dssp             HHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHH----TT-CEEEEEESCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHH----cC-CeEEEEeCCHHHHHHHHHHH
Confidence            56667776665 6789999999999999844433    22 48999999999999999987

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=96.98  E-value=0.0016  Score=61.24  Aligned_cols=97  Identities=20%  Similarity=0.207  Sum_probs=64.5

Q ss_pred             CCCCCCEEEEECC------CCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccC
Q psy11646         30 KWTDNESVLDVGC------GPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLA  103 (433)
Q Consensus        30 ~~~~~~~VLDIGc------G~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~  103 (433)
                      ..+.+++|||+|+      .+|.+   .+++..+.+ ..++++|+.+-.        .... .++++|......    .+
T Consensus       106 ~vp~gmrVLDLGA~s~kg~APGS~---VLr~~~p~g-~~VVavDL~~~~--------sda~-~~IqGD~~~~~~----~~  168 (344)
T 3r24_A          106 AVPYNMRVIHFGAGSDKGVAPGTA---VLRQWLPTG-TLLVDSDLNDFV--------SDAD-STLIGDCATVHT----AN  168 (344)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHHH---HHHHHSCTT-CEEEEEESSCCB--------CSSS-EEEESCGGGEEE----SS
T ss_pred             eecCCCEEEeCCCCCCCCCCCcHH---HHHHhCCCC-cEEEEeeCcccc--------cCCC-eEEEcccccccc----CC
Confidence            3456999999996      77774   344445553 499999998732        1123 458899765322    27


Q ss_pred             cEeEEEEccccc---c--------hhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646        104 KFNKIFSFYCLH---W--------VQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       104 ~fD~Vis~~~l~---~--------~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      +||+|+|-.+=.   +        ..=.+.++.-+.+.|+|||.+++=.+-
T Consensus       169 k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQ  219 (344)
T 3r24_A          169 KWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE  219 (344)
T ss_dssp             CEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             CCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEec
Confidence            899999933211   0        011466788889999999999986543

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.78  E-value=0.0023  Score=62.68  Aligned_cols=73  Identities=16%  Similarity=0.205  Sum_probs=54.1

Q ss_pred             HHHHHHHHhcCCC------CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEeccc
Q psy11646         20 KLLSQYIDQFKWT------DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIA   93 (433)
Q Consensus        20 ~ll~~l~~~l~~~------~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~   93 (433)
                      .+++.+++.+...      ++..|||||.|.|.+|..++....+   .+++++|+++.++...++.....+++++.+|+.
T Consensus        39 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~---~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l  115 (353)
T 1i4w_A           39 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCP---RQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPY  115 (353)
T ss_dssp             HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCC---SEEEEECCCHHHHHHHHHHTTTSSCEEECSCTT
T ss_pred             HHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCC---CEEEEEecCHHHHHHHHHhccCCCEEEEECCcc
Confidence            3444455444443      3589999999999999666642211   389999999999999988764468999999985


Q ss_pred             CC
Q psy11646         94 DQ   95 (433)
Q Consensus        94 ~~   95 (433)
                      ..
T Consensus       116 ~~  117 (353)
T 1i4w_A          116 DW  117 (353)
T ss_dssp             CH
T ss_pred             ch
Confidence            53

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.47  E-value=0.0046  Score=57.78  Aligned_cols=55  Identities=20%  Similarity=0.250  Sum_probs=43.7

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH   80 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~   80 (433)
                      .+++.++.... .++..|||..||+|..+..++. +   + .+++|+|+++.+++.|++++
T Consensus       200 ~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~-~---g-r~~ig~e~~~~~~~~~~~r~  254 (260)
T 1g60_A          200 DLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKK-L---G-RNFIGCDMNAEYVNQANFVL  254 (260)
T ss_dssp             HHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHH-T---T-CEEEEEESCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHH-c---C-CeEEEEeCCHHHHHHHHHHH
Confidence            56666666654 6789999999999999844433 2   2 48999999999999999986

>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}

Probab=96.42  E-value=0.015  Score=53.61  Aligned_cols=90  Identities=20%  Similarity=0.229  Sum_probs=68.6

Q ss_pred             CCCeEEEecCCCCCCCCCchhHHHHHHHHHHHH----HHHHHhccCCCeEEEEEeecCC--HHHHHHHHhcccceeEEec
Q psy11646        200 EKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGAL----NITTFLLKPGGTFVGKIFRSRN--VVCLETKFQIFFENVSIAK  273 (433)
Q Consensus       200 ~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al----~ia~~~L~~gG~fv~Kif~g~~--~~~~~~~l~~~F~~v~~~K  273 (433)
                      .++|+|..++.-.--    .-||.|.+---.-+    .-|...|+|||++|+|-+--.|  .+.....+-+.|+.+.+.|
T Consensus       210 grYDlVfvNv~TpyR----~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGyADR~SE~vV~alARkF~~~rv~~  285 (324)
T 3trk_A          210 GRYDLVVINIHTPFR----IHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSERVICVLGRKFRSSRALK  285 (324)
T ss_dssp             CCEEEEEEECCCCCC----SSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEEEEEC
T ss_pred             CceeEEEEecCCccc----cchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeecccccchHHHHHHHHhhheeeeeec
Confidence            478999888765433    23444432222222    3366799999999999998888  6789999999999999999


Q ss_pred             CCCCcccccceeEEEeeccCC
Q psy11646        274 PKSSRNSSIESFIVCQNYRPP  294 (433)
Q Consensus       274 P~~sr~~s~E~~~v~~~~~~~  294 (433)
                      |+..-+ +.|+|+|-.+|...
T Consensus       286 P~cv~s-nTEv~~vF~~~Dng  305 (324)
T 3trk_A          286 PPCVTS-NTEMFFLFSNFDNG  305 (324)
T ss_dssp             CTTCCB-TTCEEEEEEEECCC
T ss_pred             Cccccc-cceEEEEEEeccCC
Confidence            987765 99999999999763

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=96.03  E-value=0.051  Score=46.13  Aligned_cols=75  Identities=33%  Similarity=0.461  Sum_probs=62.6

Q ss_pred             ccccCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEE
Q psy11646        172 LLFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFV  246 (433)
Q Consensus       172 ~pl~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv  246 (433)
                      ...+.+...++|+.+....+.+...+....+|+|++++.....+....|+....++....+.-+..+|++||.++
T Consensus        59 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  133 (180)
T 1ej0_A           59 DPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFV  133 (180)
T ss_dssp             CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccCcEEEEEcccccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence            344677888888887666666666677789999999999888888888888888888999999999999999886

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=96.03  E-value=0.005  Score=58.06  Aligned_cols=104  Identities=14%  Similarity=0.008  Sum_probs=78.3

Q ss_pred             CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcccc--cccCcEeEEEE
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLES--IFLAKFNKIFS  110 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~--~~~~~fD~Vis  110 (433)
                      +..+||+=+|||.++..++.    .+ .+++.+|.++..++..++++ ...++++...|.... +..  ....+||+|++
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS----~~-d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~-L~~l~~~~~~fdLVfi  165 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLR----SQ-DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSK-LNALLPPPEKRGLIFI  165 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSC----TT-SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHH-HHHHCSCTTSCEEEEE
T ss_pred             CCCceeEeCCcHHHHHHHcC----CC-CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHH-HHHhcCCCCCccEEEE
Confidence            56799999999999977765    22 59999999999999999998 446789999886442 111  11257999999


Q ss_pred             cccccchhhHHHHHHHHHH--hccCCCEEEEEecc
Q psy11646        111 FYCLHWVQDQRQAISNIYN--LLMPGGEVLLLLNA  143 (433)
Q Consensus       111 ~~~l~~~~d~~~~l~~i~~--~LkpGG~lll~~~~  143 (433)
                      -..+..-.+...++..+.+  .+.|+|.+++..+.
T Consensus       166 DPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi  200 (283)
T 2oo3_A          166 DPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPV  200 (283)
T ss_dssp             CCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred             CCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEec
Confidence            9888754566666666655  55699999987643

>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}

Probab=95.49  E-value=0.051  Score=55.20  Aligned_cols=89  Identities=20%  Similarity=0.218  Sum_probs=68.5

Q ss_pred             CCCeEEEecCCCCCCCCCchhHHHHHHHHHH----HHHHHHHhccCCCeEEEEEeecCC--HHHHHHHHhcccceeEEec
Q psy11646        200 EKVDLVVFDGAPDVTGLHDLDEHLQGLLLIG----ALNITTFLLKPGGTFVGKIFRSRN--VVCLETKFQIFFENVSIAK  273 (433)
Q Consensus       200 ~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~----al~ia~~~L~~gG~fv~Kif~g~~--~~~~~~~l~~~F~~v~~~K  273 (433)
                      .++|+|..+..-.--.    .||.|.+---.    .-.=|...|+|||++|+|-+--.|  .+.....+.+.|..+.+.|
T Consensus       220 ~ryDlvfvn~~t~yr~----HHyqQCeDHa~~l~ml~~~al~~l~pGGt~v~~~YGyADr~sE~vv~alaRkF~~~rv~~  295 (670)
T 4gua_A          220 ARYDLVFINIGTKYRN----HHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAAR  295 (670)
T ss_dssp             CCEEEEEECCCCCCCS----CHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCSHHHHHHHHHHHHTEEEEEEEC
T ss_pred             CcccEEEEecCCCccc----chHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEeeccccchHHHHHHHHhheeeeeeeC
Confidence            3799999888654333    34444322111    223467899999999999998888  6789999999999999999


Q ss_pred             CCCCcccccceeEEEeeccC
Q psy11646        274 PKSSRNSSIESFIVCQNYRP  293 (433)
Q Consensus       274 P~~sr~~s~E~~~v~~~~~~  293 (433)
                      |+.+-++ .|+|+|-.+|..
T Consensus       296 p~~~~sn-TEv~~~f~~~Dn  314 (670)
T 4gua_A          296 PDCVSSN-TEMYLIFRQLDN  314 (670)
T ss_dssp             CTTCSBT-TCEEEEEEEECC
T ss_pred             CCccccC-ceEEEEEEecCC
Confidence            9887665 999999999975

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=95.44  E-value=0.018  Score=50.53  Aligned_cols=114  Identities=19%  Similarity=0.225  Sum_probs=77.8

Q ss_pred             HHHHhcC-CCCCCEEEEECCCCChhHHHHhcccCCCC-------CcEEEEEeCCHHHHHHHHhhcCCCCeEEE-EecccC
Q psy11646         24 QYIDQFK-WTDNESVLDVGCGPGNVTSKLLLPNLPKS-------VVKLVGLDVSPNMIKHAKNHHTNPKLEFV-VANIAD   94 (433)
Q Consensus        24 ~l~~~l~-~~~~~~VLDIGcG~G~~~~~~l~~~~~~~-------~~~v~gvDiS~~~l~~A~~~~~~~~i~~~-~~Di~~   94 (433)
                      ++...+. .+++.+|||+|||+|.++. .+++..+..       ..+++|+|+|+.+        ...++++. ++|+..
T Consensus        12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~-~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------~~~~~~~~~~~d~~~   82 (196)
T 2nyu_A           12 EVNERHQILRPGLRVLDCGAAPGAWSQ-VAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------PLEGATFLCPADVTD   82 (196)
T ss_dssp             HHHHHHCCCCTTCEEEEETCCSCHHHH-HHHHHTTTTCCCTTSCCCEEEEECSSCCC--------CCTTCEEECSCCTTS
T ss_pred             HHHHhcCCCCCCCEEEEeCCCCCHHHH-HHHHHhccccccccCCCceEEEEechhcc--------cCCCCeEEEeccCCC
Confidence            3444443 4678999999999999994 455444320       0389999999842        12568888 888765


Q ss_pred             Ccccc-----cccCcEeEEEEccccc----chhhH-------HHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646         95 QNLES-----IFLAKFNKIFSFYCLH----WVQDQ-------RQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus        95 ~~l~~-----~~~~~fD~Vis~~~l~----~~~d~-------~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      .....     ...++||+|++..+++    |..+.       ..+++++.++|||||.+++.......
T Consensus        83 ~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~  150 (196)
T 2nyu_A           83 PRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQ  150 (196)
T ss_dssp             HHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGG
T ss_pred             HHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence            43210     1235899999966444    33333       47899999999999999998655433

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.99  E-value=0.021  Score=56.02  Aligned_cols=101  Identities=15%  Similarity=0.090  Sum_probs=64.6

Q ss_pred             HhcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc----ccc
Q psy11646         27 DQFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE----SIF  101 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~----~~~  101 (433)
                      +....+++.+||-+|+|. |..+..+++ ..  +..+|+++|.+++.++.+++.- ..  .++  |..+..+.    ...
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak-~~--Ga~~Vi~~~~~~~~~~~a~~lG-a~--~vi--~~~~~~~~~~~~~~~  255 (371)
T 1f8f_A          184 NALKVTPASSFVTWGAGAVGLSALLAAK-VC--GASIIIAVDIVESRLELAKQLG-AT--HVI--NSKTQDPVAAIKEIT  255 (371)
T ss_dssp             TTTCCCTTCEEEEESCSHHHHHHHHHHH-HH--TCSEEEEEESCHHHHHHHHHHT-CS--EEE--ETTTSCHHHHHHHHT
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHH-Hc--CCCeEEEECCCHHHHHHHHHcC-CC--EEe--cCCccCHHHHHHHhc
Confidence            455667899999999875 555534333 32  2137999999999999998652 11  122  22221111    111


Q ss_pred             cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        102 LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       102 ~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .+.+|+|+-.-.-      ...+....+.|++||++++..
T Consensus       256 ~gg~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          256 DGGVNFALESTGS------PEILKQGVDALGILGKIAVVG  289 (371)
T ss_dssp             TSCEEEEEECSCC------HHHHHHHHHTEEEEEEEEECC
T ss_pred             CCCCcEEEECCCC------HHHHHHHHHHHhcCCEEEEeC
Confidence            2379999875542      346778899999999988753

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=94.90  E-value=0.12  Score=51.01  Aligned_cols=75  Identities=15%  Similarity=0.101  Sum_probs=56.1

Q ss_pred             CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccccc-----ccCcEeEEE
Q psy11646         35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESI-----FLAKFNKIF  109 (433)
Q Consensus        35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~-----~~~~fD~Vi  109 (433)
                      .+++|+-||.|.++..+..    .++..+.++|+++.+++..+.++  ++..++..|+.+......     ....+|+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~----aG~~~v~avE~d~~a~~t~~~N~--~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~   76 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAAR----AGFDVKMAVEIDQHAINTHAINF--PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGII   76 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHH----HTCEEEEEECSCHHHHHHHHHHC--TTSEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred             CeEEEEccCcCHHHHHHHH----CCCcEEEEEeCCHHHHHHHHHhC--CCCceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence            5899999999999855543    24346789999999999999887  466788899987532221     136799999


Q ss_pred             Eccccc
Q psy11646        110 SFYCLH  115 (433)
Q Consensus       110 s~~~l~  115 (433)
                      ......
T Consensus        77 ggpPCQ   82 (376)
T 3g7u_A           77 GGPPCQ   82 (376)
T ss_dssp             ECCCCC
T ss_pred             ecCCCC
Confidence            876643

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=94.81  E-value=0.06  Score=51.33  Aligned_cols=105  Identities=15%  Similarity=0.171  Sum_probs=61.3

Q ss_pred             CCCCEEEEECCCCChhHHHHhc---ccCCCCCcEEEEEeCC------------HHHHHHHHhhc---CCCC--eEEEEec
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLL---PNLPKSVVKLVGLDVS------------PNMIKHAKNHH---TNPK--LEFVVAN   91 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~---~~~~~~~~~v~gvDiS------------~~~l~~A~~~~---~~~~--i~~~~~D   91 (433)
                      ++..+|||+|-|+|-.....+.   +..+....+++.+|..            ....+....+.   ...+  +++..+|
T Consensus        95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD  174 (308)
T 3vyw_A           95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD  174 (308)
T ss_dssp             CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred             CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence            3456899999999986532221   2233332456777642            12222222222   1233  4567788


Q ss_pred             ccCCcccccccCcEeEEEEcccccchhhH----HHHHHHHHHhccCCCEEE
Q psy11646         92 IADQNLESIFLAKFNKIFSFYCLHWVQDQ----RQAISNIYNLLMPGGEVL  138 (433)
Q Consensus        92 i~~~~l~~~~~~~fD~Vis~~~l~~~~d~----~~~l~~i~~~LkpGG~ll  138 (433)
                      +.+. +++....+||+|+.-. +..-.++    ..+++.++++++|||.+.
T Consensus       175 a~~~-l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~la  223 (308)
T 3vyw_A          175 ARKR-IKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWV  223 (308)
T ss_dssp             HHHH-GGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEE
T ss_pred             HHHH-HhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEE
Confidence            7654 4443345799998743 2211222    578999999999999865

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=94.40  E-value=0.094  Score=51.86  Aligned_cols=105  Identities=13%  Similarity=0.170  Sum_probs=66.3

Q ss_pred             HhcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcc-cc----c
Q psy11646         27 DQFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL-ES----I  100 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l-~~----~  100 (433)
                      .....+++.+||-+|+|. |..+..+++ ..  +..+|+++|.+++.++.+++.    +.+.  .|..+... .+    .
T Consensus       179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~--Ga~~Vi~~~~~~~~~~~a~~l----Ga~~--i~~~~~~~~~~~~~~~  249 (398)
T 2dph_A          179 VSAGVKPGSHVYIAGAGPVGRCAAAGAR-LL--GAACVIVGDQNPERLKLLSDA----GFET--IDLRNSAPLRDQIDQI  249 (398)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHH-HH--TCSEEEEEESCHHHHHHHHTT----TCEE--EETTSSSCHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHH-Hc--CCCEEEEEcCCHHHHHHHHHc----CCcE--EcCCCcchHHHHHHHH
Confidence            445667899999999876 656544443 32  213899999999999998864    2232  23322221 11    1


Q ss_pred             cc-CcEeEEEEcccccch--------hhHHHHHHHHHHhccCCCEEEEE
Q psy11646        101 FL-AKFNKIFSFYCLHWV--------QDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       101 ~~-~~fD~Vis~~~l~~~--------~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      .. ..+|+|+-.-.-...        ......+....+.|++||++++.
T Consensus       250 ~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          250 LGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             HSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred             hCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence            11 269999876553210        01234678889999999998765

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=94.36  E-value=0.042  Score=48.61  Aligned_cols=44  Identities=20%  Similarity=0.104  Sum_probs=30.5

Q ss_pred             CcEeEEEEcccccc----h-------hhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        103 AKFNKIFSFYCLHW----V-------QDQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       103 ~~fD~Vis~~~l~~----~-------~d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      ++||+|++......    .       .....+++.+.++|||||.+++.......
T Consensus        90 ~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~  144 (191)
T 3dou_A           90 EKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM  144 (191)
T ss_dssp             SSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH
T ss_pred             CcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC
Confidence            47899998653221    1       12357789999999999999987654433

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=94.32  E-value=0.039  Score=53.71  Aligned_cols=78  Identities=18%  Similarity=0.163  Sum_probs=54.1

Q ss_pred             CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEccc
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYC  113 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~  113 (433)
                      ..+|+|+-||.|.++..+.. ..- ....+.++|+++.+++..+.++  ++..+..+|+.+..........+|+|+....
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~-~G~-~~~~v~~~E~d~~a~~~~~~N~--~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpP   77 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRE-SCI-PAQVVAAIDVNTVANEVYKYNF--PHTQLLAKTIEGITLEEFDRLSFDMILMSPP   77 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHH-HTC-SEEEEEEECCCHHHHHHHHHHC--TTSCEECSCGGGCCHHHHHHHCCSEEEECCC
T ss_pred             CCeEEEeCcCccHHHHHHHH-CCC-CceEEEEEeCCHHHHHHHHHhc--cccccccCCHHHccHhHcCcCCcCEEEEcCC
Confidence            35899999999999855443 210 0237999999999999999998  3445778898875322111126899999776


Q ss_pred             cc
Q psy11646        114 LH  115 (433)
Q Consensus       114 l~  115 (433)
                      ..
T Consensus        78 Cq   79 (343)
T 1g55_A           78 CQ   79 (343)
T ss_dssp             --
T ss_pred             Cc
Confidence            44

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=94.15  E-value=0.057  Score=47.47  Aligned_cols=49  Identities=14%  Similarity=0.135  Sum_probs=35.6

Q ss_pred             CcEeEEEEcccccch----hhH-------HHHHHHHHHhccCCCEEEEEeccCCchhhHH
Q psy11646        103 AKFNKIFSFYCLHWV----QDQ-------RQAISNIYNLLMPGGEVLLLLNAFNPIYDLY  151 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~----~d~-------~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~  151 (433)
                      ++||+|++..++++.    .+.       ..+++++.++|||||.+++............
T Consensus       105 ~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~  164 (201)
T 2plw_A          105 KKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLK  164 (201)
T ss_dssp             CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHH
T ss_pred             CcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHH
Confidence            689999999887763    222       2478999999999999998665444333333

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=94.11  E-value=0.3  Score=46.64  Aligned_cols=104  Identities=11%  Similarity=0.134  Sum_probs=73.7

Q ss_pred             CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC------CCCeEEEEecccCCcccc-cc-----c
Q psy11646         35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT------NPKLEFVVANIADQNLES-IF-----L  102 (433)
Q Consensus        35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~------~~~i~~~~~Di~~~~l~~-~~-----~  102 (433)
                      ..|++||||-=....++ .  .+.+ .+++-+| -|..++..++.+.      ..+..++.+|+.+ ...+ ..     .
T Consensus       104 ~QvV~LGaGlDTra~Rl-~--~~~~-~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~  177 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRL-D--WPTG-TTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDP  177 (310)
T ss_dssp             CEEEEETCTTCCHHHHS-C--CCTT-CEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCT
T ss_pred             CeEEEeCCCCCchhhhc-c--CCCC-cEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCC
Confidence            46999999987765332 2  1333 5899999 5888888877762      4567889999987 3322 11     1


Q ss_pred             CcEeEEEEcccccchhh--HHHHHHHHHHhccCCCEEEEEeccC
Q psy11646        103 AKFNKIFSFYCLHWVQD--QRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      +.-=++++-.+++++++  ...+++.+.+.+.||+.+++.....
T Consensus       178 ~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~  221 (310)
T 2uyo_A          178 SARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPL  221 (310)
T ss_dssp             TSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred             CCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence            33457788888898854  5678889989889999988875443

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=93.94  E-value=0.03  Score=49.49  Aligned_cols=98  Identities=14%  Similarity=0.105  Sum_probs=61.2

Q ss_pred             hcCCCCCCEEEEECCC--CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc-----c
Q psy11646         28 QFKWTDNESVLDVGCG--PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES-----I  100 (433)
Q Consensus        28 ~l~~~~~~~VLDIGcG--~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~-----~  100 (433)
                      ....+++.+||..|++  .|..+..+++.   .+ .+|+++|.+++.++.+++. +   ... ..|..+....+     .
T Consensus        33 ~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~---~G-~~V~~~~~~~~~~~~~~~~-g---~~~-~~d~~~~~~~~~~~~~~  103 (198)
T 1pqw_A           33 VGRLSPGERVLIHSATGGVGMAAVSIAKM---IG-ARIYTTAGSDAKREMLSRL-G---VEY-VGDSRSVDFADEILELT  103 (198)
T ss_dssp             TSCCCTTCEEEETTTTSHHHHHHHHHHHH---HT-CEEEEEESSHHHHHHHHTT-C---CSE-EEETTCSTHHHHHHHHT
T ss_pred             HhCCCCCCEEEEeeCCChHHHHHHHHHHH---cC-CEEEEEeCCHHHHHHHHHc-C---CCE-EeeCCcHHHHHHHHHHh
Confidence            3456789999999953  34444333332   23 5899999999988877653 2   111 22443321111     0


Q ss_pred             ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ....+|+|+.+..       ...+....+.|+|||+++...
T Consensus       104 ~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A          104 DGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             TTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEECS
T ss_pred             CCCCCeEEEECCc-------hHHHHHHHHHhccCCEEEEEc
Confidence            1236999997653       135778889999999988753

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=93.91  E-value=0.083  Score=51.76  Aligned_cols=101  Identities=13%  Similarity=0.124  Sum_probs=64.3

Q ss_pred             HhcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc------
Q psy11646         27 DQFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES------   99 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~------   99 (433)
                      .....+++.+||=+|+|. |..+.. +++..  +..+|+++|.+++.++.+++.- ..  ..  .|..+..+.+      
T Consensus       176 ~~~~~~~g~~VlV~GaG~vG~~aiq-lak~~--Ga~~Vi~~~~~~~~~~~a~~lG-a~--~v--i~~~~~~~~~~i~~~~  247 (370)
T 4ej6_A          176 DLSGIKAGSTVAILGGGVIGLLTVQ-LARLA--GATTVILSTRQATKRRLAEEVG-AT--AT--VDPSAGDVVEAIAGPV  247 (370)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHH-HHHHT--TCSEEEEECSCHHHHHHHHHHT-CS--EE--ECTTSSCHHHHHHSTT
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHH-HHHHc--CCCEEEEECCCHHHHHHHHHcC-CC--EE--ECCCCcCHHHHHHhhh
Confidence            555678899999999864 444433 33332  3238999999999999988752 11  11  2222211111      


Q ss_pred             -cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        100 -IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       100 -~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                       ...+.+|+|+-.-.-      ...+....++|++||++++..
T Consensus       248 ~~~~gg~Dvvid~~G~------~~~~~~~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          248 GLVPGGVDVVIECAGV------AETVKQSTRLAKAGGTVVILG  284 (370)
T ss_dssp             SSSTTCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECS
T ss_pred             hccCCCCCEEEECCCC------HHHHHHHHHHhccCCEEEEEe
Confidence             112479999875431      346778889999999988753

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=93.91  E-value=0.22  Score=49.13  Aligned_cols=105  Identities=14%  Similarity=0.176  Sum_probs=66.3

Q ss_pred             hcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc-cc----cc-
Q psy11646         28 QFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN-LE----SI-  100 (433)
Q Consensus        28 ~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~-l~----~~-  100 (433)
                      ....+++.+||-+|+|. |..+.. +++..  +..+|+++|.+++.++.+++.    +.+.  .|..... +.    .. 
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiq-lAk~~--Ga~~Vi~~~~~~~~~~~a~~l----Ga~~--i~~~~~~~~~~~v~~~t  250 (398)
T 1kol_A          180 TAGVGPGSTVYVAGAGPVGLAAAA-SARLL--GAAVVIVGDLNPARLAHAKAQ----GFEI--ADLSLDTPLHEQIAALL  250 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHH-HHHHT--TCSEEEEEESCHHHHHHHHHT----TCEE--EETTSSSCHHHHHHHHH
T ss_pred             HcCCCCCCEEEEECCcHHHHHHHH-HHHHC--CCCeEEEEcCCHHHHHHHHHc----CCcE--EccCCcchHHHHHHHHh
Confidence            45667899999999865 555533 33332  223799999999999999764    2232  2322211 11    11 


Q ss_pred             ccCcEeEEEEccccc---------chhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        101 FLAKFNKIFSFYCLH---------WVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~---------~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ....+|+|+-.-.-.         +.+++...+....++|++||++++..
T Consensus       251 ~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          251 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             CCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence            113699999765422         12234457888899999999987753

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=93.89  E-value=0.59  Score=45.08  Aligned_cols=115  Identities=13%  Similarity=0.210  Sum_probs=76.6

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-C----------------
Q psy11646         19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-T----------------   81 (433)
Q Consensus        19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~----------------   81 (433)
                      ...+.++++.   .+...|+.+|||......++... .+  ..+++-+|. |+.++.-++.+ .                
T Consensus        86 D~~v~~fl~~---~~~~qVV~LGaGlDTr~~RL~~~-~~--~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~  158 (334)
T 1rjd_A           86 DAAILEFLVA---NEKVQVVNLGCGSDLRMLPLLQM-FP--HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTA  158 (334)
T ss_dssp             HHHHHHHHHH---CSSEEEEEETCTTCCTHHHHHHH-CT--TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCC
T ss_pred             HHHHHHHHHH---CCCcEEEEeCCCCccHHHHhcCc-CC--CCEEEECCC-HHHHHHHHHHhhhccchhhhccccccccc
Confidence            3444444443   35678999999999988666542 12  258888888 77776655554 1                


Q ss_pred             -------CCCeEEEEecccCCcc-----ccc-ccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEe
Q psy11646         82 -------NPKLEFVVANIADQNL-----ESI-FLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        82 -------~~~i~~~~~Di~~~~l-----~~~-~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                             ..+..++..|+.+...     ... ..+...++++-.++.+++  ....+++.+.+.. |+|.+++.+
T Consensus       159 ~~~~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e  232 (334)
T 1rjd_A          159 KSPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYD  232 (334)
T ss_dssp             CTTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEE
T ss_pred             ccccccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEe
Confidence                   2578899999987422     111 225578999999999985  3566788888877 677765543

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=93.89  E-value=0.056  Score=52.17  Aligned_cols=100  Identities=14%  Similarity=0.167  Sum_probs=64.6

Q ss_pred             HhcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccccc---cc
Q psy11646         27 DQFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESI---FL  102 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~---~~  102 (433)
                      .....+++.+||-+|+|. |..+..+++ ..  + .+|+++|.+++.++.+++.- ..  ..  .|..+....+.   ..
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~--G-a~Vi~~~~~~~~~~~~~~lG-a~--~~--i~~~~~~~~~~~~~~~  230 (340)
T 3s2e_A          160 KVTDTRPGQWVVISGIGGLGHVAVQYAR-AM--G-LRVAAVDIDDAKLNLARRLG-AE--VA--VNARDTDPAAWLQKEI  230 (340)
T ss_dssp             HTTTCCTTSEEEEECCSTTHHHHHHHHH-HT--T-CEEEEEESCHHHHHHHHHTT-CS--EE--EETTTSCHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHH-HC--C-CeEEEEeCCHHHHHHHHHcC-CC--EE--EeCCCcCHHHHHHHhC
Confidence            445667899999999875 555533333 32  3 59999999999999998752 11  11  23222212110   12


Q ss_pred             CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        103 AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +.+|+|+-...      ....+....+.|+++|++++..
T Consensus       231 g~~d~vid~~g------~~~~~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          231 GGAHGVLVTAV------SPKAFSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             SSEEEEEESSC------CHHHHHHHHHHEEEEEEEEECS
T ss_pred             CCCCEEEEeCC------CHHHHHHHHHHhccCCEEEEeC
Confidence            47899886543      1346778889999999988753

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=93.85  E-value=0.11  Score=48.34  Aligned_cols=112  Identities=13%  Similarity=0.130  Sum_probs=70.4

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhccc-------CCCCCcEEEEEeC-----CH---------------------
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPN-------LPKSVVKLVGLDV-----SP---------------------   70 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~-------~~~~~~~v~gvDi-----S~---------------------   70 (433)
                      ++.+.+. .-++.|+|+|+-.|..+.. ++..       .+.  .++++.|.     .+                     
T Consensus        61 ~l~~~i~-~vpG~ivE~GV~rG~S~~~-~a~~~~~l~~~~~~--r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~  136 (257)
T 3tos_A           61 ALYRQVL-DVPGVIMEFGVRFGRHLGT-FAALRGVYEPYNPL--RRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGY  136 (257)
T ss_dssp             HHHHHTT-TSCSEEEEECCTTCHHHHH-HHHHHHHHCTTCTT--CCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTH
T ss_pred             HHHHHhh-CCCCeEEEEecccCHHHHH-HHHHHHHhcccCCC--CEEEEEECCCCCCCCccccccccccccCcccccchh
Confidence            3344433 3345899999999998743 3221       122  38999982     21                     


Q ss_pred             -HHHHHH---Hh---hcC--CCCeEEEEecccCCccccc----ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEE
Q psy11646         71 -NMIKHA---KN---HHT--NPKLEFVVANIADQNLESI----FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEV  137 (433)
Q Consensus        71 -~~l~~A---~~---~~~--~~~i~~~~~Di~~~~l~~~----~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~l  137 (433)
                       +.++..   .+   +++  ..+++++.+++.+. ++..    ...+||+|+.-.-.  -......+..+...|+|||.+
T Consensus       137 ~~~l~~~l~~~~~~~~~g~~~~~i~li~G~~~dT-L~~~l~~~~~~~~dlv~ID~D~--Y~~t~~~le~~~p~l~~GGvI  213 (257)
T 3tos_A          137 PAYLKEVLDAHECSDFFGHVTQRSVLVEGDVRET-VPRYLAENPQTVIALAYFDLDL--YEPTKAVLEAIRPYLTKGSIV  213 (257)
T ss_dssp             HHHHHHHHHHHHTTSTTTTSCCSEEEEESCHHHH-HHHHHHHCTTCCEEEEEECCCC--HHHHHHHHHHHGGGEEEEEEE
T ss_pred             HHHHHHHHHHHhhhhhcCCCCCcEEEEEecHHHH-HHHHHHhCCCCceEEEEEcCcc--cchHHHHHHHHHHHhCCCcEE
Confidence             112211   11   222  37899999998764 3331    23579999986643  234566788999999999999


Q ss_pred             EEEec
Q psy11646        138 LLLLN  142 (433)
Q Consensus       138 ll~~~  142 (433)
                      ++-..
T Consensus       214 v~DD~  218 (257)
T 3tos_A          214 AFDEL  218 (257)
T ss_dssp             EESST
T ss_pred             EEcCC
Confidence            88664

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=93.71  E-value=0.084  Score=51.33  Aligned_cols=101  Identities=22%  Similarity=0.201  Sum_probs=63.2

Q ss_pred             HhcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccC---Ccc----c
Q psy11646         27 DQFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD---QNL----E   98 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~---~~l----~   98 (433)
                      .....+++.+||-+|+|. |..+..+ ++..  +..+|+++|.++..++.+++.- ..  .++  |...   ...    .
T Consensus       165 ~~~~~~~g~~VlV~GaG~vG~~aiql-ak~~--Ga~~Vi~~~~~~~~~~~a~~lG-a~--~vi--~~~~~~~~~~~~~i~  236 (356)
T 1pl8_A          165 RRGGVTLGHKVLVCGAGPIGMVTLLV-AKAM--GAAQVVVTDLSATRLSKAKEIG-AD--LVL--QISKESPQEIARKVE  236 (356)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHH-HHHT--TCSEEEEEESCHHHHHHHHHTT-CS--EEE--ECSSCCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHH-HHHc--CCCEEEEECCCHHHHHHHHHhC-CC--EEE--cCcccccchHHHHHH
Confidence            445668899999999865 5555333 3332  3138999999999999988642 11  222  2220   001    1


Q ss_pred             ccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ......+|+|+-.-.-      ...+....++|+|||+++...
T Consensus       237 ~~~~~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          237 GQLGCKPEVTIECTGA------EASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             HHHTSCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECS
T ss_pred             HHhCCCCCEEEECCCC------hHHHHHHHHHhcCCCEEEEEe
Confidence            1011469999875542      235677889999999988753

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=93.61  E-value=0.16  Score=49.36  Aligned_cols=105  Identities=17%  Similarity=0.146  Sum_probs=64.8

Q ss_pred             HhcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc----c-c
Q psy11646         27 DQFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE----S-I  100 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~----~-~  100 (433)
                      .....++|.+||=+|+|. |..+.. +++..  +...|+++|.+++.++.+++. ...-+.+...+.....+.    . .
T Consensus       173 ~~~~~~~g~~VlV~GaG~vG~~aiq-lak~~--Ga~~Vi~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t  248 (363)
T 3m6i_A          173 QRAGVRLGDPVLICGAGPIGLITML-CAKAA--GACPLVITDIDEGRLKFAKEI-CPEVVTHKVERLSAEESAKKIVESF  248 (363)
T ss_dssp             HHHTCCTTCCEEEECCSHHHHHHHH-HHHHT--TCCSEEEEESCHHHHHHHHHH-CTTCEEEECCSCCHHHHHHHHHHHT
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHH-HHHHc--CCCEEEEECCCHHHHHHHHHh-chhcccccccccchHHHHHHHHHHh
Confidence            556678899999999864 444433 33332  212499999999999999987 323233221111000011    1 0


Q ss_pred             ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ....+|+|+-.-.-      ...+....++|++||++++..
T Consensus       249 ~g~g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          249 GGIEPAVALECTGV------ESSIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             SSCCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECC
T ss_pred             CCCCCCEEEECCCC------hHHHHHHHHHhcCCCEEEEEc
Confidence            12469999875541      335778889999999998764

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=93.54  E-value=0.13  Score=49.49  Aligned_cols=107  Identities=14%  Similarity=0.091  Sum_probs=63.6

Q ss_pred             HHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc-cccCc
Q psy11646         26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES-IFLAK  104 (433)
Q Consensus        26 ~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~-~~~~~  104 (433)
                      ++....+++.+||=+|+|++......+++..  ++.+|+++|.+++-++.+++.-...-+.....|..+. ... .....
T Consensus       156 l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~--~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~-v~~~t~g~g  232 (348)
T 4eez_A          156 IKVSGVKPGDWQVIFGAGGLGNLAIQYAKNV--FGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDE-IKKITGGLG  232 (348)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHT--SCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHH-HHHHTTSSC
T ss_pred             ecccCCCCCCEEEEEcCCCccHHHHHHHHHh--CCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHH-hhhhcCCCC
Confidence            3445567899999999987654433333332  2359999999999988888763111111111111110 111 11234


Q ss_pred             EeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        105 FNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       105 fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +|.++....      -...+....+.|+++|++++..
T Consensus       233 ~d~~~~~~~------~~~~~~~~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          233 VQSAIVCAV------ARIAFEQAVASLKPMGKMVAVA  263 (348)
T ss_dssp             EEEEEECCS------CHHHHHHHHHTEEEEEEEEECC
T ss_pred             ceEEEEecc------CcchhheeheeecCCceEEEEe
Confidence            676665433      2456778889999999988754

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=93.04  E-value=0.051  Score=52.75  Aligned_cols=101  Identities=11%  Similarity=0.113  Sum_probs=63.9

Q ss_pred             HhcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc----c-
Q psy11646         27 DQFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES----I-  100 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~----~-  100 (433)
                      +....+++.+||=+|+|. |..+.. +++..  +..+|+++|.+++.++.+++.- ..  .+  .|..+..+.+    . 
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~q-la~~~--Ga~~Vi~~~~~~~~~~~~~~lG-a~--~v--i~~~~~~~~~~v~~~t  231 (352)
T 3fpc_A          160 ELANIKLGDTVCVIGIGPVGLMSVA-GANHL--GAGRIFAVGSRKHCCDIALEYG-AT--DI--INYKNGDIVEQILKAT  231 (352)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHH-HHHTT--TCSSEEEECCCHHHHHHHHHHT-CC--EE--ECGGGSCHHHHHHHHT
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHH-HHHHc--CCcEEEEECCCHHHHHHHHHhC-Cc--eE--EcCCCcCHHHHHHHHc
Confidence            556678899999999865 444433 33332  3237999999999999998762 11  11  2222211111    1 


Q ss_pred             ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ....+|+|+-.-.-      ...+....+.|+|||+++...
T Consensus       232 ~g~g~D~v~d~~g~------~~~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          232 DGKGVDKVVIAGGD------VHTFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             TTCCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCCCEEEECCCC------hHHHHHHHHHHhcCCEEEEec
Confidence            11369999875442      235777889999999988764

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=92.88  E-value=0.28  Score=47.30  Aligned_cols=72  Identities=8%  Similarity=0.023  Sum_probs=52.0

Q ss_pred             CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEccc
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYC  113 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~  113 (433)
                      +.+++|+.||.|.++..+..    .+...+.++|+++.+++..+.++....    ..|+.+.....  ...+|+|+....
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~----aG~~~v~~~e~d~~a~~t~~~N~~~~~----~~Di~~~~~~~--~~~~D~l~~gpP   80 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALES----CGAECVYSNEWDKYAQEVYEMNFGEKP----EGDITQVNEKT--IPDHDILCAGFP   80 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHH----TTCEEEEEECCCHHHHHHHHHHHSCCC----BSCGGGSCGGG--SCCCSEEEEECC
T ss_pred             CCcEEEECCCcCHHHHHHHH----CCCeEEEEEeCCHHHHHHHHHHcCCCC----cCCHHHcCHhh--CCCCCEEEECCC
Confidence            57999999999999855543    344568999999999999999873221    57887643221  135899998655


Q ss_pred             cc
Q psy11646        114 LH  115 (433)
Q Consensus       114 l~  115 (433)
                      ..
T Consensus        81 CQ   82 (327)
T 2c7p_A           81 CQ   82 (327)
T ss_dssp             CT
T ss_pred             CC
Confidence            43

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=92.69  E-value=0.18  Score=48.89  Aligned_cols=100  Identities=21%  Similarity=0.133  Sum_probs=62.7

Q ss_pred             HhcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccC-Ccccc----c
Q psy11646         27 DQFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD-QNLES----I  100 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~-~~l~~----~  100 (433)
                      ...+.+++.+||-+|+|. |..+..+++ .  .+ .+|+++|.+++.++.+++.- ..  ..  .|..+ ....+    .
T Consensus       162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~-~--~G-a~Vi~~~~~~~~~~~~~~lG-a~--~~--~~~~~~~~~~~~i~~~  232 (352)
T 1e3j_A          162 RRAGVQLGTTVLVIGAGPIGLVSVLAAK-A--YG-AFVVCTARSPRRLEVAKNCG-AD--VT--LVVDPAKEEESSIIER  232 (352)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHH-H--TT-CEEEEEESCHHHHHHHHHTT-CS--EE--EECCTTTSCHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHH-H--cC-CEEEEEcCCHHHHHHHHHhC-CC--EE--EcCcccccHHHHHHHH
Confidence            445667899999999864 444433333 2  23 47999999999999988642 11  11  22221 11111    1


Q ss_pred             c----cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        101 F----LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       101 ~----~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .    ...+|+|+-.-.-      ...+....+.|+++|+++...
T Consensus       233 ~~~~~g~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          233 IRSAIGDLPNVTIDCSGN------EKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             HHHHSSSCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECS
T ss_pred             hccccCCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence            1    2469999875542      235677889999999988753

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=92.61  E-value=0.24  Score=47.52  Aligned_cols=55  Identities=16%  Similarity=0.237  Sum_probs=42.9

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH   80 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~   80 (433)
                      .+++.++.... ++|..|||.-||+|..+..... +   + .+++|+|+++..++.|++++
T Consensus       240 ~l~~~~i~~~~-~~~~~VlDpF~GsGtt~~aa~~-~---g-r~~ig~e~~~~~~~~~~~r~  294 (323)
T 1boo_A          240 KLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAER-E---S-RKWISFEMKPEYVAASAFRF  294 (323)
T ss_dssp             HHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHH-T---T-CEEEEEESCHHHHHHHHGGG
T ss_pred             HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHH-c---C-CCEEEEeCCHHHHHHHHHHH
Confidence            45666665543 6799999999999998843332 2   2 48999999999999999987

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=92.29  E-value=0.12  Score=49.48  Aligned_cols=99  Identities=17%  Similarity=0.144  Sum_probs=63.0

Q ss_pred             HhcCCCCCCEEEEECCC--CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccC-Ccccc----
Q psy11646         27 DQFKWTDNESVLDVGCG--PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD-QNLES----   99 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG--~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~-~~l~~----   99 (433)
                      +....+++.+||-.|++  .|..+..+++.   .+ .+|+++|.+++.++.+++. +.   . ...|..+ .....    
T Consensus       139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~---~G-~~V~~~~~~~~~~~~~~~~-g~---~-~~~d~~~~~~~~~~~~~  209 (333)
T 1v3u_A          139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKL---KG-CKVVGAAGSDEKIAYLKQI-GF---D-AAFNYKTVNSLEEALKK  209 (333)
T ss_dssp             TTSCCCSSCEEEEESTTBHHHHHHHHHHHH---TT-CEEEEEESSHHHHHHHHHT-TC---S-EEEETTSCSCHHHHHHH
T ss_pred             HhhCCCCCCEEEEecCCCcHHHHHHHHHHH---CC-CEEEEEeCCHHHHHHHHhc-CC---c-EEEecCCHHHHHHHHHH
Confidence            44556789999999983  44444333332   23 5899999999999888543 21   1 1234433 21211    


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ...+.+|+++.+..-       ..+....+.|++||++++..
T Consensus       210 ~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          210 ASPDGYDCYFDNVGG-------EFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             HCTTCEEEEEESSCH-------HHHHHHHTTEEEEEEEEECC
T ss_pred             HhCCCCeEEEECCCh-------HHHHHHHHHHhcCCEEEEEe
Confidence            112479999877652       24677889999999988753

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=92.16  E-value=0.26  Score=47.36  Aligned_cols=104  Identities=14%  Similarity=0.113  Sum_probs=65.6

Q ss_pred             HHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc-----
Q psy11646         25 YIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES-----   99 (433)
Q Consensus        25 l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~-----   99 (433)
                      ........++.+||=.|+|........+++...  ...++++|.+++-++.|++.-   ....+  |..+....+     
T Consensus       152 ~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G--~~~vi~~~~~~~k~~~a~~lG---a~~~i--~~~~~~~~~~~~~~  224 (346)
T 4a2c_A          152 AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALG--AKSVTAIDISSEKLALAKSFG---AMQTF--NSSEMSAPQMQSVL  224 (346)
T ss_dssp             HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHHTT---CSEEE--ETTTSCHHHHHHHH
T ss_pred             HHHHhccCCCCEEEEECCCCcchHHHHHHHHcC--CcEEEEEechHHHHHHHHHcC---CeEEE--eCCCCCHHHHHHhh
Confidence            345556678999999999765544344444433  247899999999999998752   11222  222221111     


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .....+|+|+-.-.      ....+....++|++||.+++..
T Consensus       225 ~~~~g~d~v~d~~G------~~~~~~~~~~~l~~~G~~v~~g  260 (346)
T 4a2c_A          225 RELRFNQLILETAG------VPQTVELAVEIAGPHAQLALVG  260 (346)
T ss_dssp             GGGCSSEEEEECSC------SHHHHHHHHHHCCTTCEEEECC
T ss_pred             cccCCccccccccc------ccchhhhhhheecCCeEEEEEe
Confidence            11245788776543      2346777889999999988764

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=92.13  E-value=0.4  Score=46.26  Aligned_cols=95  Identities=17%  Similarity=0.164  Sum_probs=62.1

Q ss_pred             HhcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcE
Q psy11646         27 DQFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKF  105 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~f  105 (433)
                      ...+.+++.+||-+|+|. |..+..++ +..  + .+|+++|.+++.++.+++. +..  .++ .+...  +.    ..+
T Consensus       170 ~~~~~~~g~~VlV~GaG~vG~~a~qla-~~~--G-a~Vi~~~~~~~~~~~~~~l-Ga~--~v~-~~~~~--~~----~~~  235 (348)
T 3two_A          170 KFSKVTKGTKVGVAGFGGLGSMAVKYA-VAM--G-AEVSVFARNEHKKQDALSM-GVK--HFY-TDPKQ--CK----EEL  235 (348)
T ss_dssp             HHTTCCTTCEEEEESCSHHHHHHHHHH-HHT--T-CEEEEECSSSTTHHHHHHT-TCS--EEE-SSGGG--CC----SCE
T ss_pred             HhcCCCCCCEEEEECCcHHHHHHHHHH-HHC--C-CeEEEEeCCHHHHHHHHhc-CCC--eec-CCHHH--Hh----cCC
Confidence            344667899999999865 44443333 332  3 5899999999999998874 222  222 22111  11    379


Q ss_pred             eEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        106 NKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       106 D~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |+|+-.-.-.      ..+....+.|+|+|++++..
T Consensus       236 D~vid~~g~~------~~~~~~~~~l~~~G~iv~~G  265 (348)
T 3two_A          236 DFIISTIPTH------YDLKDYLKLLTYNGDLALVG  265 (348)
T ss_dssp             EEEEECCCSC------CCHHHHHTTEEEEEEEEECC
T ss_pred             CEEEECCCcH------HHHHHHHHHHhcCCEEEEEC
Confidence            9998755422      14567789999999988764

>1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_U

Probab=91.94  E-value=0.51  Score=51.44  Aligned_cols=105  Identities=23%  Similarity=0.207  Sum_probs=87.9

Q ss_pred             HHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCC--HHHHHHHHhcccceeEE
Q psy11646        194 FSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRN--VVCLETKFQIFFENVSI  271 (433)
Q Consensus       194 l~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~--~~~~~~~l~~~F~~v~~  271 (433)
                      ...+...-+.+|.||.---+.|-.+++  ...+.+.+.+..+.+....||.+|+|+=--..  +..+.++...+|....+
T Consensus       563 ~~p~pTGtf~fVYSDvDQV~dgg~Dl~--Aasr~~~~~l~~~l~~tt~GG~~VvKiNFPT~~~W~~lf~~~~~~~~s~~l  640 (1289)
T 1ej6_A          563 ARPFPSGDYQFVYSDVDQVVDGHDDLS--ISSGLVESLLSSCMHATAPGGSFVVKINFPTRPVWHYIEQKILPNITSYML  640 (1289)
T ss_dssp             TSCCSCCCEEEEEECCCCCCSSSTTHH--HHHHHHHHHHHHHHHHEEEEEEEEEEESSCCHHHHHHHHHHTGGGEEEEEE
T ss_pred             eccCCCcceEEEEechhhhhcCCCcch--hhHHHHHHHHHHHHHhhccCceEEEEEcCCChHHHHHHHHhhccccceeee
Confidence            344566778999999999988887776  45678889999999999999999999954443  67899999999999999


Q ss_pred             ecCCCCcccccceeEEEeeccCCCCCCCCcc
Q psy11646        272 AKPKSSRNSSIESFIVCQNYRPPKDYVPTIM  302 (433)
Q Consensus       272 ~KP~~sr~~s~E~~~v~~~~~~~~~~~~~~~  302 (433)
                      .||-=  ..|.|+|+||.++.....+.|+..
T Consensus       641 vKP~I--vNnvEvflv~~~r~~~g~l~~t~~  669 (1289)
T 1ej6_A          641 IKPFV--TNNVELFFVAFGVHQHSSLTWTSG  669 (1289)
T ss_dssp             EEEES--SSSCCEEEEEEEESCCCCCCBCHH
T ss_pred             eccee--ecceEEEEEEEeeecCCCCCCchh
Confidence            99964  478999999999997777777654

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=91.91  E-value=0.13  Score=49.52  Aligned_cols=100  Identities=12%  Similarity=0.132  Sum_probs=64.1

Q ss_pred             HhcCCCCCCEEEEECCC--CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc----c
Q psy11646         27 DQFKWTDNESVLDVGCG--PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES----I  100 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG--~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~----~  100 (433)
                      +....+++.+||-.|++  .|..+..+++ .  .+ .+|++++.+++.++.+.+.++..  .  ..|..+..+..    .
T Consensus       143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~-~--~G-a~Vi~~~~~~~~~~~~~~~~g~~--~--~~~~~~~~~~~~~~~~  214 (336)
T 4b7c_A          143 DVGQPKNGETVVISGAAGAVGSVAGQIAR-L--KG-CRVVGIAGGAEKCRFLVEELGFD--G--AIDYKNEDLAAGLKRE  214 (336)
T ss_dssp             HTTCCCTTCEEEESSTTSHHHHHHHHHHH-H--TT-CEEEEEESSHHHHHHHHHTTCCS--E--EEETTTSCHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHH-H--CC-CEEEEEeCCHHHHHHHHHHcCCC--E--EEECCCHHHHHHHHHh
Confidence            55567889999999983  3445433333 2  23 59999999999999884444221  1  12333222211    1


Q ss_pred             ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ..+.+|+|+.+-.-       ..+....+.|+++|++++..
T Consensus       215 ~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~G  248 (336)
T 4b7c_A          215 CPKGIDVFFDNVGG-------EILDTVLTRIAFKARIVLCG  248 (336)
T ss_dssp             CTTCEEEEEESSCH-------HHHHHHHTTEEEEEEEEECC
T ss_pred             cCCCceEEEECCCc-------chHHHHHHHHhhCCEEEEEe
Confidence            12569999876551       36778889999999988753

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=91.76  E-value=0.42  Score=45.99  Aligned_cols=79  Identities=14%  Similarity=0.107  Sum_probs=54.2

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEE-EEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEc
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKL-VGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSF  111 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v-~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~  111 (433)
                      ...+++|+-||.|.++..+...-++  ...+ .++|+++.+.+..+.++...   +...|+.+..........+|+++..
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~--~~~v~~a~e~d~~a~~ty~~N~~~~---~~~~DI~~~~~~~i~~~~~Dil~gg   83 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSIN--INATFIPFDINEIANKIYSKNFKEE---VQVKNLDSISIKQIESLNCNTWFMS   83 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCC--CCEEEEEECCCHHHHHHHHHHHCCC---CBCCCTTTCCHHHHHHTCCCEEEEC
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCC--ceEEEEEEECCHHHHHHHHHHCCCC---cccCChhhcCHHHhccCCCCEEEec
Confidence            3568999999999998444331111  1356 79999999999999987322   5678888764332222468999987


Q ss_pred             ccccc
Q psy11646        112 YCLHW  116 (433)
Q Consensus       112 ~~l~~  116 (433)
                      .....
T Consensus        84 pPCQ~   88 (327)
T 3qv2_A           84 PPCQP   88 (327)
T ss_dssp             CCCTT
T ss_pred             CCccC
Confidence            66443

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=91.72  E-value=0.091  Score=50.70  Aligned_cols=101  Identities=12%  Similarity=0.110  Sum_probs=62.9

Q ss_pred             HHHhcCCCCCCEEEEECCCC--ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc---
Q psy11646         25 YIDQFKWTDNESVLDVGCGP--GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES---   99 (433)
Q Consensus        25 l~~~l~~~~~~~VLDIGcG~--G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~---   99 (433)
                      +.+....+++.+||-+|+|.  |..+..+++.   .+ .+|+++|.+++.++.+++.- ..  ..  .|..+..+.+   
T Consensus       136 ~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~---~G-a~Vi~~~~~~~~~~~~~~lg-a~--~~--~~~~~~~~~~~~~  206 (340)
T 3gms_A          136 CTETLNLQRNDVLLVNACGSAIGHLFAQLSQI---LN-FRLIAVTRNNKHTEELLRLG-AA--YV--IDTSTAPLYETVM  206 (340)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHH---HT-CEEEEEESSSTTHHHHHHHT-CS--EE--EETTTSCHHHHHH
T ss_pred             HHHhcccCCCCEEEEeCCccHHHHHHHHHHHH---cC-CEEEEEeCCHHHHHHHHhCC-Cc--EE--EeCCcccHHHHHH
Confidence            34556678899999999874  5555344332   23 58999999999999888752 11  11  2332222211   


Q ss_pred             -c-ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        100 -I-FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       100 -~-~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                       . ....+|+|+-+-.-.       ......+.|++||+++...
T Consensus       207 ~~~~~~g~Dvvid~~g~~-------~~~~~~~~l~~~G~iv~~G  243 (340)
T 3gms_A          207 ELTNGIGADAAIDSIGGP-------DGNELAFSLRPNGHFLTIG  243 (340)
T ss_dssp             HHTTTSCEEEEEESSCHH-------HHHHHHHTEEEEEEEEECC
T ss_pred             HHhCCCCCcEEEECCCCh-------hHHHHHHHhcCCCEEEEEe
Confidence             1 124799998765522       1233458999999988764

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=91.57  E-value=0.57  Score=44.93  Aligned_cols=99  Identities=13%  Similarity=0.130  Sum_probs=63.4

Q ss_pred             HhcCCCCCCEEEEECC--CCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC-cccc----
Q psy11646         27 DQFKWTDNESVLDVGC--GPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ-NLES----   99 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGc--G~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~-~l~~----   99 (433)
                      +....+++.+||-.|+  |.|..+..+++.   .+ .+|++++.+++.++.+++.++..  .  ..|..+. .+..    
T Consensus       149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~---~G-~~V~~~~~~~~~~~~~~~~~g~~--~--~~d~~~~~~~~~~~~~  220 (345)
T 2j3h_A          149 EVCSPKEGETVYVSAASGAVGQLVGQLAKM---MG-CYVVGSAGSKEKVDLLKTKFGFD--D--AFNYKEESDLTAALKR  220 (345)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHH---TT-CEEEEEESSHHHHHHHHHTSCCS--E--EEETTSCSCSHHHHHH
T ss_pred             HHhCCCCCCEEEEECCCcHHHHHHHHHHHH---CC-CEEEEEeCCHHHHHHHHHHcCCc--e--EEecCCHHHHHHHHHH
Confidence            4456678999999997  344444333332   23 58999999999999887544221  1  1243321 1111    


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      ...+.+|+|+.+-.-       ..+....+.|++||++++.
T Consensus       221 ~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          221 CFPNGIDIYFENVGG-------KMLDAVLVNMNMHGRIAVC  254 (345)
T ss_dssp             HCTTCEEEEEESSCH-------HHHHHHHTTEEEEEEEEEC
T ss_pred             HhCCCCcEEEECCCH-------HHHHHHHHHHhcCCEEEEE
Confidence            112469999876552       3677888999999998875

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=91.54  E-value=1  Score=44.36  Aligned_cols=84  Identities=10%  Similarity=0.134  Sum_probs=53.0

Q ss_pred             hcCCCCCCEEEEECCCCChhHHHHhcccC--CC--CCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCccccccc
Q psy11646         28 QFKWTDNESVLDVGCGPGNVTSKLLLPNL--PK--SVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLESIFL  102 (433)
Q Consensus        28 ~l~~~~~~~VLDIGcG~G~~~~~~l~~~~--~~--~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~~~~  102 (433)
                      .+..+...+|+|+|+|.|.++..+|....  +.  ...+|+.+|+|+...+.-++++ ...++.|.. ++.+.  +.   
T Consensus        75 ~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~v~W~~-~l~~l--p~---  148 (387)
T 1zkd_A           75 AADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWHD-SFEDV--PE---  148 (387)
T ss_dssp             HTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEES-SGGGS--CC---
T ss_pred             HcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCCCCeEEeC-Chhhc--CC---
Confidence            44444456899999999999877765432  10  1148999999999888766666 222466542 23332  21   


Q ss_pred             CcEeEEEEcccccchh
Q psy11646        103 AKFNKIFSFYCLHWVQ  118 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~~  118 (433)
                      + .=+|+++..+..++
T Consensus       149 ~-~~~viANE~fDAlP  163 (387)
T 1zkd_A          149 G-PAVILANEYFDVLP  163 (387)
T ss_dssp             S-SEEEEEESSGGGSC
T ss_pred             C-CeEEEeccccccCc
Confidence            2 34778887776553

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=91.50  E-value=0.13  Score=48.70  Aligned_cols=58  Identities=16%  Similarity=0.278  Sum_probs=41.1

Q ss_pred             CCeEEEEecccCCcccccccCcEeEEEEcccccch--------------------hhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWV--------------------QDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        83 ~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~--------------------~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .++.++++|..+. +....+++||+|+++......                    ......++++.++|+|||.+++..
T Consensus        20 ~~~~i~~gD~~~~-l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~   97 (297)
T 2zig_A           20 GVHRLHVGDAREV-LASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVV   97 (297)
T ss_dssp             -CEEEEESCHHHH-HTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCEEEECcHHHH-HhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            4578899998652 222234799999998876421                    123457889999999999998864

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=91.46  E-value=0.4  Score=46.77  Aligned_cols=99  Identities=20%  Similarity=0.226  Sum_probs=61.2

Q ss_pred             hcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEe
Q psy11646         28 QFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFN  106 (433)
Q Consensus        28 ~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD  106 (433)
                      ....+++.+||-+|+|. |..+..++ +.  .+ .+|+++|.+++.++.+++. +..  .+  .|..+........+.+|
T Consensus       189 ~~~~~~g~~VlV~GaG~vG~~aiqla-k~--~G-a~Vi~~~~~~~~~~~a~~l-Ga~--~v--i~~~~~~~~~~~~~g~D  259 (369)
T 1uuf_A          189 HWQAGPGKKVGVVGIGGLGHMGIKLA-HA--MG-AHVVAFTTSEAKREAAKAL-GAD--EV--VNSRNADEMAAHLKSFD  259 (369)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHH-HH--TT-CEEEEEESSGGGHHHHHHH-TCS--EE--EETTCHHHHHTTTTCEE
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHH-HH--CC-CEEEEEeCCHHHHHHHHHc-CCc--EE--eccccHHHHHHhhcCCC
Confidence            34567899999999874 44443333 32  23 5899999999999998874 211  11  12221111111115799


Q ss_pred             EEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        107 KIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       107 ~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +|+-.-.-.      ..+....+.|+++|+++...
T Consensus       260 vvid~~g~~------~~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          260 FILNTVAAP------HNLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             EEEECCSSC------CCHHHHHTTEEEEEEEEECC
T ss_pred             EEEECCCCH------HHHHHHHHHhccCCEEEEec
Confidence            998765422      13556778999999988753

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=91.43  E-value=0.31  Score=48.48  Aligned_cols=62  Identities=13%  Similarity=0.149  Sum_probs=45.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-C-----C-CCeEEEEeccc
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-T-----N-PKLEFVVANIA   93 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~-----~-~~i~~~~~Di~   93 (433)
                      .+++..|+||||+.|.++..++++..+.. .+|+++|++|...+..+++. .     . .+++++..-+.
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~-~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~  292 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKF-ERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG  292 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCC-SEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCC-CEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence            46889999999999999955443444432 49999999999999998876 2     2 56666555443

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=91.07  E-value=0.24  Score=48.33  Aligned_cols=101  Identities=14%  Similarity=0.147  Sum_probs=62.5

Q ss_pred             HhcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccC--Ccccc----
Q psy11646         27 DQFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD--QNLES----   99 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~--~~l~~----   99 (433)
                      +....+++.+||-+|+|. |..+.. +++..  +..+|+++|.+++.++.+++. +..  .+  .|..+  ..+.+    
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~a~q-la~~~--Ga~~Vi~~~~~~~~~~~~~~l-Ga~--~v--i~~~~~~~~~~~~~~~  256 (374)
T 2jhf_A          185 KVAKVTQGSTCAVFGLGGVGLSVIM-GCKAA--GAARIIGVDINKDKFAKAKEV-GAT--EC--VNPQDYKKPIQEVLTE  256 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHH-HHHHT--TCSEEEEECSCGGGHHHHHHT-TCS--EE--ECGGGCSSCHHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHH-HHHHc--CCCeEEEEcCCHHHHHHHHHh-CCc--eE--ecccccchhHHHHHHH
Confidence            445667899999999764 444433 33332  313899999999999998764 211  11  23221  11111    


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCC-CEEEEEe
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPG-GEVLLLL  141 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpG-G~lll~~  141 (433)
                      ...+.+|+|+-.-.-      ...+....++|+++ |++++..
T Consensus       257 ~~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          257 MSNGGVDFSFEVIGR------LDTMVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             HTTSCBSEEEECSCC------HHHHHHHHHHBCTTTCEEEECS
T ss_pred             HhCCCCcEEEECCCC------HHHHHHHHHHhhcCCcEEEEec
Confidence            112469999875542      34577888999999 9988753

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=90.86  E-value=0.12  Score=50.36  Aligned_cols=99  Identities=9%  Similarity=0.070  Sum_probs=62.4

Q ss_pred             HhcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc----c-
Q psy11646         27 DQFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES----I-  100 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~----~-  100 (433)
                      +....+++.+||=+|+|. |..+..+ ++.  .+ .+++++|.+++.++.+++.- .  -..+  |-....+.+    . 
T Consensus       183 ~~~~~~~g~~VlV~G~G~vG~~a~ql-a~~--~G-a~Vi~~~~~~~~~~~~~~lG-a--~~vi--~~~~~~~~~~v~~~~  253 (363)
T 3uog_A          183 EKGHLRAGDRVVVQGTGGVALFGLQI-AKA--TG-AEVIVTSSSREKLDRAFALG-A--DHGI--NRLEEDWVERVYALT  253 (363)
T ss_dssp             TTTCCCTTCEEEEESSBHHHHHHHHH-HHH--TT-CEEEEEESCHHHHHHHHHHT-C--SEEE--ETTTSCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHH-HHH--cC-CEEEEEecCchhHHHHHHcC-C--CEEE--cCCcccHHHHHHHHh
Confidence            455667899999999765 4444333 333  23 59999999999999988752 1  1222  211111111    1 


Q ss_pred             ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ....+|+|+-.-.-       ..+....+.|+|||++++..
T Consensus       254 ~g~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G  287 (363)
T 3uog_A          254 GDRGADHILEIAGG-------AGLGQSLKAVAPDGRISVIG  287 (363)
T ss_dssp             TTCCEEEEEEETTS-------SCHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCceEEEECCCh-------HHHHHHHHHhhcCCEEEEEe
Confidence            12379999876551       24567788999999988764

>3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav myristol group, icosahedral virus; HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_A

Probab=90.84  E-value=1.1  Score=49.39  Aligned_cols=101  Identities=17%  Similarity=0.109  Sum_probs=79.5

Q ss_pred             HhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEee-cCC-HHHHHHHHhcccceeEEe
Q psy11646        195 SHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFR-SRN-VVCLETKFQIFFENVSIA  272 (433)
Q Consensus       195 ~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~-g~~-~~~~~~~l~~~F~~v~~~  272 (433)
                      .-+...-+.+|.||.---..|-.+++  .+.+++.+.+..+.+....||.+|+|+=- ... +..+..++..+|..+.++
T Consensus       568 ~p~pTGtf~fVYSDVDQV~d~~~Dl~--As~r~~~~~l~~~l~~ts~GG~~v~KiNFPT~~vw~~if~~~~~~~~~~~i~  645 (1299)
T 3iyl_W          568 RAVPTGTFGLVYADLDQVEDAGTDMP--AANRAAIAMLGTALQMTTAGGVSVLKVNFPTRAFWTQVFNLYATHATTLHLV  645 (1299)
T ss_dssp             SCCCCCCEEEEEECCCCC-----CCH--HHHHHHHHHHHHHHHHEEEEEEEEEEESCCCTTHHHHHHHHTTTTCSCEEEE
T ss_pred             ccCCCCceEEEEecchhhccCCcchh--hhhHHHHHHHHHHHHhhcCCceEEEEEcCCchHHHHHHHHHhcchhheeeee
Confidence            34556678999999988888877776  45678888899999999999999999944 444 679999999999999999


Q ss_pred             cCCCCcccccceeEEEeeccCCCCCCC
Q psy11646        273 KPKSSRNSSIESFIVCQNYRPPKDYVP  299 (433)
Q Consensus       273 KP~~sr~~s~E~~~v~~~~~~~~~~~~  299 (433)
                      ||-=  ..|.|+|+|..+......+.|
T Consensus       646 KPli--~NnvEvf~v~~~r~~~~~l~~  670 (1299)
T 3iyl_W          646 KPTI--VNSSEVFLVFGGRQSNGALRS  670 (1299)
T ss_dssp             ECCS--SSCCCEEEEESCCCTTCCCCC
T ss_pred             ccee--ecceEEEEEEeeecccCCCCC
Confidence            9975  478999999988886666665

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=90.79  E-value=0.47  Score=45.62  Aligned_cols=98  Identities=16%  Similarity=0.200  Sum_probs=61.0

Q ss_pred             CCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccC-Cc-ccccc-cCcE
Q psy11646         30 KWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD-QN-LESIF-LAKF  105 (433)
Q Consensus        30 ~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~-~~-l~~~~-~~~f  105 (433)
                      .. ++.+||-+|+|. |..+..+++...+ + .+|+++|.+++.++.+++.- ..  .++  |..+ .. ..... ...+
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~-G-a~Vi~~~~~~~~~~~~~~lG-a~--~vi--~~~~~~~~~~~~~~g~g~  239 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMK-N-ITIVGISRSKKHRDFALELG-AD--YVS--EMKDAESLINKLTDGLGA  239 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCT-T-CEEEEECSCHHHHHHHHHHT-CS--EEE--CHHHHHHHHHHHHTTCCE
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcC-C-CEEEEEeCCHHHHHHHHHhC-CC--EEe--ccccchHHHHHhhcCCCc
Confidence            55 899999999864 4444333332211 3 58999999999999988752 11  111  2111 00 11111 1379


Q ss_pred             eEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        106 NKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       106 D~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |+|+-.-.-      ...+....++|+++|+++...
T Consensus       240 D~vid~~g~------~~~~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          240 SIAIDLVGT------EETTYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             EEEEESSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred             cEEEECCCC------hHHHHHHHHHhhcCCEEEEeC
Confidence            999876542      236778889999999988753

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=90.49  E-value=0.4  Score=46.01  Aligned_cols=55  Identities=13%  Similarity=0.237  Sum_probs=42.9

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCH---HHHHHHHhhc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSP---NMIKHAKNHH   80 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~---~~l~~A~~~~   80 (433)
                      .+++.++.... .++..|||.-||+|..+...+. +   + .+++|+|+++   ..++.|++++
T Consensus       230 ~l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~-~---~-r~~ig~e~~~~~~~~~~~~~~Rl  287 (319)
T 1eg2_A          230 AVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQ-E---G-RNSICTDAAPVFKEYYQKQLTFL  287 (319)
T ss_dssp             HHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHH-H---T-CEEEEEESSTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHH-c---C-CcEEEEECCccHHHHHHHHHHHH
Confidence            45566665543 6799999999999998844432 2   2 4899999999   9999999997

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=90.46  E-value=0.16  Score=49.13  Aligned_cols=100  Identities=11%  Similarity=0.102  Sum_probs=63.3

Q ss_pred             HhcCCCCCCEEEEECCC--CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccC-Ccccc----
Q psy11646         27 DQFKWTDNESVLDVGCG--PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD-QNLES----   99 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG--~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~-~~l~~----   99 (433)
                      .....+++.+||-+|++  .|..+..+++.   .+ .+|+++|.+++.++.+++. +   .. ...|..+ ..+..    
T Consensus       163 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~---~G-a~V~~~~~~~~~~~~~~~~-g---~~-~~~d~~~~~~~~~~~~~  233 (347)
T 2hcy_A          163 KSANLMAGHWVAISGAAGGLGSLAVQYAKA---MG-YRVLGIDGGEGKEELFRSI-G---GE-VFIDFTKEKDIVGAVLK  233 (347)
T ss_dssp             HTTTCCTTCEEEEETTTSHHHHHHHHHHHH---TT-CEEEEEECSTTHHHHHHHT-T---CC-EEEETTTCSCHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCchHHHHHHHHHHH---CC-CcEEEEcCCHHHHHHHHHc-C---Cc-eEEecCccHhHHHHHHH
Confidence            33456789999999983  45554333332   23 5899999999888888764 2   11 1225431 11211    


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ...+.+|+|+.+...      ...++...+.|+++|+++...
T Consensus       234 ~~~~~~D~vi~~~g~------~~~~~~~~~~l~~~G~iv~~g  269 (347)
T 2hcy_A          234 ATDGGAHGVINVSVS------EAAIEASTRYVRANGTTVLVG  269 (347)
T ss_dssp             HHTSCEEEEEECSSC------HHHHHHHTTSEEEEEEEEECC
T ss_pred             HhCCCCCEEEECCCc------HHHHHHHHHHHhcCCEEEEEe
Confidence            111369999876552      246788889999999988753

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=90.39  E-value=0.23  Score=47.85  Aligned_cols=97  Identities=13%  Similarity=0.221  Sum_probs=62.3

Q ss_pred             CCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc----c-ccC
Q psy11646         30 KWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES----I-FLA  103 (433)
Q Consensus        30 ~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~----~-~~~  103 (433)
                      ..+++.+||=+|+|. |..+..+++ ..  ++.+|+++|.+++-++.+++.- ..  .++  |..+. ..+    . ...
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~-~~--g~~~Vi~~~~~~~~~~~~~~lG-a~--~~i--~~~~~-~~~~v~~~t~g~  238 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILR-AV--SAARVIAVDLDDDRLALAREVG-AD--AAV--KSGAG-AADAIRELTGGQ  238 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHH-HH--CCCEEEEEESCHHHHHHHHHTT-CS--EEE--ECSTT-HHHHHHHHHGGG
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHH-Hc--CCCEEEEEcCCHHHHHHHHHcC-CC--EEE--cCCCc-HHHHHHHHhCCC
Confidence            457899999999865 445533333 32  2359999999999999998752 11  122  11111 111    1 113


Q ss_pred             cEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        104 KFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       104 ~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .+|+|+-.-.-      ...+....+.|+++|++++..
T Consensus       239 g~d~v~d~~G~------~~~~~~~~~~l~~~G~iv~~G  270 (345)
T 3jv7_A          239 GATAVFDFVGA------QSTIDTAQQVVAVDGHISVVG  270 (345)
T ss_dssp             CEEEEEESSCC------HHHHHHHHHHEEEEEEEEECS
T ss_pred             CCeEEEECCCC------HHHHHHHHHHHhcCCEEEEEC
Confidence            79999875542      346788899999999988763

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=90.35  E-value=0.38  Score=46.46  Aligned_cols=78  Identities=13%  Similarity=0.065  Sum_probs=53.8

Q ss_pred             CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcccc
Q psy11646         35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCL  114 (433)
Q Consensus        35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l  114 (433)
                      .+++|+-||.|.++..+.. .. -....+.++|+++.+.+..+.++  +...+...|+.+....+.....+|+++.....
T Consensus         4 ~~~idLFaG~GG~~~G~~~-aG-~~~~~v~a~e~d~~a~~ty~~N~--~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPC   79 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKE-SG-LDGEIVAAVDINTVANSVYKHNF--PETNLLNRNIQQLTPQVIKKWNVDTILMSPPC   79 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHH-HT-CSEEEEEEECCCHHHHHHHHHHC--TTSCEECCCGGGCCHHHHHHTTCCEEEECCCC
T ss_pred             CEEEEECcCccHHHHHHHH-cC-CCceEEEEEeCCHHHHHHHHHhC--CCCceeccccccCCHHHhccCCCCEEEecCCC
Confidence            4799999999999844432 21 11135889999999999999987  34456778888754332222468999886655


Q ss_pred             cc
Q psy11646        115 HW  116 (433)
Q Consensus       115 ~~  116 (433)
                      ..
T Consensus        80 Q~   81 (333)
T 4h0n_A           80 QP   81 (333)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=89.92  E-value=0.71  Score=44.28  Aligned_cols=98  Identities=18%  Similarity=0.245  Sum_probs=62.3

Q ss_pred             cCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccc---cCc
Q psy11646         29 FKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIF---LAK  104 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~---~~~  104 (433)
                      ...+++.+||-+|+|. |..+..+++ .  .+ .+|+++|.+++.++.+++. +.   .. ..|..+..+.+..   .+.
T Consensus       160 ~~~~~g~~VlV~GaG~vG~~~~~~a~-~--~G-a~Vi~~~~~~~~~~~~~~l-Ga---~~-~~d~~~~~~~~~~~~~~~~  230 (339)
T 1rjw_A          160 TGAKPGEWVAIYGIGGLGHVAVQYAK-A--MG-LNVVAVDIGDEKLELAKEL-GA---DL-VVNPLKEDAAKFMKEKVGG  230 (339)
T ss_dssp             HTCCTTCEEEEECCSTTHHHHHHHHH-H--TT-CEEEEECSCHHHHHHHHHT-TC---SE-EECTTTSCHHHHHHHHHSS
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHH-H--cC-CEEEEEeCCHHHHHHHHHC-CC---CE-EecCCCccHHHHHHHHhCC
Confidence            3567899999999853 444433332 2  23 5999999999999988763 21   11 2344322221100   146


Q ss_pred             EeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        105 FNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       105 fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +|+|+..-..      ...+....++|+++|+++...
T Consensus       231 ~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g  261 (339)
T 1rjw_A          231 VHAAVVTAVS------KPAFQSAYNSIRRGGACVLVG  261 (339)
T ss_dssp             EEEEEESSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCEEEECCCC------HHHHHHHHHHhhcCCEEEEec
Confidence            9999876542      245778889999999988753

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=89.85  E-value=1.2  Score=42.07  Aligned_cols=77  Identities=13%  Similarity=0.037  Sum_probs=53.9

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcE--EEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccc-cCcEeEEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVK--LVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIF-LAKFNKIF  109 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~--v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~-~~~fD~Vi  109 (433)
                      .+.+++|+-||.|.++..+..    .+...  +.++|+++.+.+..+.++  +...+...|+.+....... .+.+|+++
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~----aG~~~~~v~a~E~d~~a~~ty~~N~--~~~~~~~~DI~~i~~~~i~~~~~~Dll~   88 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKD----LGIQVDRYIASEVCEDSITVGMVRH--QGKIMYVGDVRSVTQKHIQEWGPFDLVI   88 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHH----TTBCEEEEEEECCCHHHHHHHHHHT--TTCEEEECCGGGCCHHHHHHTCCCSEEE
T ss_pred             CCCEEEEeCcCccHHHHHHHH----CCCccceEEEEECCHHHHHHHHHhC--CCCceeCCChHHccHHHhcccCCcCEEE
Confidence            467899999999999844433    23223  699999999999888876  3456788999875322211 14689999


Q ss_pred             Eccccc
Q psy11646        110 SFYCLH  115 (433)
Q Consensus       110 s~~~l~  115 (433)
                      ......
T Consensus        89 ggpPCQ   94 (295)
T 2qrv_A           89 GGSPCN   94 (295)
T ss_dssp             ECCCCG
T ss_pred             ecCCCc
Confidence            865443

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=89.66  E-value=0.63  Score=44.78  Aligned_cols=100  Identities=16%  Similarity=0.232  Sum_probs=62.8

Q ss_pred             hcCCCCCCEEEEECCCCC--hhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcc----cccc
Q psy11646         28 QFKWTDNESVLDVGCGPG--NVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL----ESIF  101 (433)
Q Consensus        28 ~l~~~~~~~VLDIGcG~G--~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l----~~~~  101 (433)
                      ..+.+++.+||-.|+|+|  ..+..+++.. . + .+|+++|.+++.++.+++. +..  .+  .|..+...    ....
T Consensus       165 ~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~-~-G-a~Vi~~~~~~~~~~~~~~~-g~~--~~--~~~~~~~~~~~~~~~~  236 (347)
T 1jvb_A          165 KASLDPTKTLLVVGAGGGLGTMAVQIAKAV-S-G-ATIIGVDVREEAVEAAKRA-GAD--YV--INASMQDPLAEIRRIT  236 (347)
T ss_dssp             HTTCCTTCEEEEETTTSHHHHHHHHHHHHH-T-C-CEEEEEESSHHHHHHHHHH-TCS--EE--EETTTSCHHHHHHHHT
T ss_pred             hcCCCCCCEEEEECCCccHHHHHHHHHHHc-C-C-CeEEEEcCCHHHHHHHHHh-CCC--EE--ecCCCccHHHHHHHHh
Confidence            355678999999999744  3443333321 0 3 5899999999999888764 211  11  23322211    1111


Q ss_pred             c-CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        102 L-AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       102 ~-~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      . +.+|+|+.+..-      ...+....++|+++|++++..
T Consensus       237 ~~~~~d~vi~~~g~------~~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          237 ESKGVDAVIDLNNS------EKTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             TTSCEEEEEESCCC------HHHHTTGGGGEEEEEEEEECC
T ss_pred             cCCCceEEEECCCC------HHHHHHHHHHHhcCCEEEEEC
Confidence            1 479999876542      335677889999999988753

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=89.58  E-value=0.29  Score=47.44  Aligned_cols=99  Identities=19%  Similarity=0.154  Sum_probs=61.9

Q ss_pred             HhcCCCCCCEEEEECCC--CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc-----
Q psy11646         27 DQFKWTDNESVLDVGCG--PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES-----   99 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG--~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~-----   99 (433)
                      ...+.+++.+||-.|++  .|..+..+++.   .+ .+|++++.+++.++.+++.-    .. ...|..+....+     
T Consensus       164 ~~~~~~~g~~vlV~GasggiG~~~~~~a~~---~G-a~Vi~~~~~~~~~~~~~~~g----a~-~~~d~~~~~~~~~~~~~  234 (351)
T 1yb5_A          164 HSACVKAGESVLVHGASGGVGLAACQIARA---YG-LKILGTAGTEEGQKIVLQNG----AH-EVFNHREVNYIDKIKKY  234 (351)
T ss_dssp             TTSCCCTTCEEEEETCSSHHHHHHHHHHHH---TT-CEEEEEESSHHHHHHHHHTT----CS-EEEETTSTTHHHHHHHH
T ss_pred             HhhCCCCcCEEEEECCCChHHHHHHHHHHH---CC-CEEEEEeCChhHHHHHHHcC----CC-EEEeCCCchHHHHHHHH
Confidence            34556789999999973  34444333332   23 58999999999888877642    11 122433221111     


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .....+|+|+.+..-       ..+....+.|+++|++++..
T Consensus       235 ~~~~~~D~vi~~~G~-------~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          235 VGEKGIDIIIEMLAN-------VNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             HCTTCEEEEEESCHH-------HHHHHHHHHEEEEEEEEECC
T ss_pred             cCCCCcEEEEECCCh-------HHHHHHHHhccCCCEEEEEe
Confidence            012369999876542       24667789999999988753

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=89.53  E-value=1.3  Score=42.25  Aligned_cols=104  Identities=13%  Similarity=0.115  Sum_probs=66.5

Q ss_pred             cCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCC
Q psy11646        175 TGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRN  254 (433)
Q Consensus       175 ~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~  254 (433)
                      +.+..+.+|..      +.+..+....+|+|++|..... +..  .+..    ....+..+.++|++||.|++-.....+
T Consensus       139 ~rv~v~~~Da~------~~l~~~~~~~fDvIi~D~~~~~-~~~--~~L~----t~efl~~~~r~LkpgGvlv~~~~~~~~  205 (317)
T 3gjy_A          139 PRVKIRVDDAR------MVAESFTPASRDVIIRDVFAGA-ITP--QNFT----TVEFFEHCHRGLAPGGLYVANCGDHSD  205 (317)
T ss_dssp             TTEEEEESCHH------HHHHTCCTTCEEEEEECCSTTS-CCC--GGGS----BHHHHHHHHHHEEEEEEEEEEEEECTT
T ss_pred             CceEEEECcHH------HHHhhccCCCCCEEEECCCCcc-ccc--hhhh----HHHHHHHHHHhcCCCcEEEEEecCCcc
Confidence            34556666643      3344455678999999974332 111  1111    134566778999999999999887665


Q ss_pred             ---HHHHHHHHhcccceeEEec-CCCCcc-cccceeEEEeec
Q psy11646        255 ---VVCLETKFQIFFENVSIAK-PKSSRN-SSIESFIVCQNY  291 (433)
Q Consensus       255 ---~~~~~~~l~~~F~~v~~~K-P~~sr~-~s~E~~~v~~~~  291 (433)
                         ...+...++..|..|.++. |..++. ...-..++|.+-
T Consensus       206 ~~~~~~~~~tL~~vF~~v~~~~~~~~~~g~~~gN~Vl~As~~  247 (317)
T 3gjy_A          206 LRGAKSELAGMMEVFEHVAVIADPPMLKGRRYGNIILMGSDT  247 (317)
T ss_dssp             CHHHHHHHHHHHHHCSEEEEEECHHHHTTSSCEEEEEEEESS
T ss_pred             hHHHHHHHHHHHHHCCceEEEEecCCCCCCcCceEEEEEECC
Confidence               3577889999999999886 444443 233455666543

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=88.63  E-value=0.48  Score=46.03  Aligned_cols=98  Identities=11%  Similarity=0.107  Sum_probs=62.2

Q ss_pred             hcCCCCCCEEEEECC--CCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc----cc
Q psy11646         28 QFKWTDNESVLDVGC--GPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES----IF  101 (433)
Q Consensus        28 ~l~~~~~~~VLDIGc--G~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~----~~  101 (433)
                      ....+++.+||-.|+  |.|..+..+++ .  .+ .+|++++.+++.++.+++. +..  ..  .|..+..+.+    ..
T Consensus       158 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~-~--~G-a~Vi~~~~~~~~~~~~~~~-Ga~--~~--~~~~~~~~~~~~~~~~  228 (362)
T 2c0c_A          158 LGGLSEGKKVLVTAAAGGTGQFAMQLSK-K--AK-CHVIGTCSSDEKSAFLKSL-GCD--RP--INYKTEPVGTVLKQEY  228 (362)
T ss_dssp             HTCCCTTCEEEETTTTBTTHHHHHHHHH-H--TT-CEEEEEESSHHHHHHHHHT-TCS--EE--EETTTSCHHHHHHHHC
T ss_pred             hcCCCCCCEEEEeCCCcHHHHHHHHHHH-h--CC-CEEEEEECCHHHHHHHHHc-CCc--EE--EecCChhHHHHHHHhc
Confidence            345678999999993  44555534433 2  23 5899999999988888863 211  11  2322211111    11


Q ss_pred             cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        102 LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       102 ~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ...+|+|+-+-.-       ..+....+.|+++|++++..
T Consensus       229 ~~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          229 PEGVDVVYESVGG-------AMFDLAVDALATKGRLIVIG  261 (362)
T ss_dssp             TTCEEEEEECSCT-------HHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCCEEEECCCH-------HHHHHHHHHHhcCCEEEEEe
Confidence            2469999876552       36778889999999988753

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=88.63  E-value=0.95  Score=47.87  Aligned_cols=106  Identities=15%  Similarity=0.135  Sum_probs=64.2

Q ss_pred             CCCEEEEECCCCChhHHHHhccc------C---CCCCcEEEEEeC---CHHHHHHHHhh--------------cC-----
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPN------L---PKSVVKLVGLDV---SPNMIKHAKNH--------------HT-----   81 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~------~---~~~~~~v~gvDi---S~~~l~~A~~~--------------~~-----   81 (433)
                      +..+|||+|.|+|......+...      .   +..-.++++++.   +++.+..+-..              +.     
T Consensus        66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (676)
T 3ps9_A           66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  145 (676)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred             CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence            45689999999998764444421      1   111257999998   87777744332              10     


Q ss_pred             ---------CCCeEEEEecccCCcccccc---cCcEeEEEEcccccch-hh--HHHHHHHHHHhccCCCEEEE
Q psy11646         82 ---------NPKLEFVVANIADQNLESIF---LAKFNKIFSFYCLHWV-QD--QRQAISNIYNLLMPGGEVLL  139 (433)
Q Consensus        82 ---------~~~i~~~~~Di~~~~l~~~~---~~~fD~Vis~~~l~~~-~d--~~~~l~~i~~~LkpGG~lll  139 (433)
                               .-.+++..+|+.+. +++..   ...||.++.-..-... ++  ...++..+.++++|||.+.-
T Consensus       146 ~~~~~~~~~~~~l~l~~gd~~~~-l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t  217 (676)
T 3ps9_A          146 CHRLLLDAGRVTLDLWFGDINEL-TSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  217 (676)
T ss_dssp             EEEEEEGGGTEEEEEEESCHHHH-GGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEE
T ss_pred             ceEEEecCCcEEEEEecCCHHHH-HHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence                     01233555666543 33221   3679999874321111 12  25689999999999998653

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=88.43  E-value=2.7  Score=39.92  Aligned_cols=72  Identities=10%  Similarity=0.161  Sum_probs=52.4

Q ss_pred             CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcccc
Q psy11646         35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCL  114 (433)
Q Consensus        35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l  114 (433)
                      ++|||+=||.|.++.. +..   .++..+.++|+++.+.+.-+.++.   -.+..+|+.+....+  -...|+++.....
T Consensus         1 mkvidLFsG~GG~~~G-~~~---aG~~~v~a~e~d~~a~~ty~~N~~---~~~~~~DI~~i~~~~--~~~~D~l~ggpPC   71 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLG-FQK---AGFRIICANEYDKSIWKTYESNHS---AKLIKGDISKISSDE--FPKCDGIIGGPPS   71 (331)
T ss_dssp             CEEEEESCTTCHHHHH-HHH---TTCEEEEEEECCTTTHHHHHHHCC---SEEEESCGGGCCGGG--SCCCSEEECCCCG
T ss_pred             CeEEEeCcCccHHHHH-HHH---CCCEEEEEEeCCHHHHHHHHHHCC---CCcccCChhhCCHhh--CCcccEEEecCCC
Confidence            4799999999999844 332   344567899999999999998872   367789998753322  2468999976544


Q ss_pred             c
Q psy11646        115 H  115 (433)
Q Consensus       115 ~  115 (433)
                      .
T Consensus        72 Q   72 (331)
T 3ubt_Y           72 Q   72 (331)
T ss_dssp             G
T ss_pred             C
Confidence            3

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=88.38  E-value=0.6  Score=45.43  Aligned_cols=101  Identities=15%  Similarity=0.196  Sum_probs=62.9

Q ss_pred             HhcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccC--Ccccc----
Q psy11646         27 DQFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD--QNLES----   99 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~--~~l~~----   99 (433)
                      +....+++.+||-+|+|. |..+.. +++..  +..+|+++|.+++.++.+++. +..  .+  .|..+  ..+.+    
T Consensus       186 ~~~~~~~g~~VlV~GaG~vG~~a~q-la~~~--Ga~~Vi~~~~~~~~~~~~~~l-Ga~--~v--i~~~~~~~~~~~~~~~  257 (374)
T 1cdo_A          186 NTAKVEPGSTCAVFGLGAVGLAAVM-GCHSA--GAKRIIAVDLNPDKFEKAKVF-GAT--DF--VNPNDHSEPISQVLSK  257 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHH-HHHHT--TCSEEEEECSCGGGHHHHHHT-TCC--EE--ECGGGCSSCHHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHH-HHHHc--CCCEEEEEcCCHHHHHHHHHh-CCc--eE--EeccccchhHHHHHHH
Confidence            445667899999999764 444433 33332  323899999999999998864 211  11  23321  11111    


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCC-CEEEEEe
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPG-GEVLLLL  141 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpG-G~lll~~  141 (433)
                      ...+.+|+|+-.-.-      ...+....++|+++ |++++..
T Consensus       258 ~~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~G  294 (374)
T 1cdo_A          258 MTNGGVDFSLECVGN------VGVMRNALESCLKGWGVSVLVG  294 (374)
T ss_dssp             HHTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECS
T ss_pred             HhCCCCCEEEECCCC------HHHHHHHHHHhhcCCcEEEEEc
Confidence            112479999875542      34577888999999 9988753

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=88.37  E-value=1.4  Score=42.45  Aligned_cols=100  Identities=11%  Similarity=0.085  Sum_probs=63.4

Q ss_pred             HhcCCCCC--CEEEEECCCC--ChhHHHHhcccCCCCCc-EEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc--
Q psy11646         27 DQFKWTDN--ESVLDVGCGP--GNVTSKLLLPNLPKSVV-KLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES--   99 (433)
Q Consensus        27 ~~l~~~~~--~~VLDIGcG~--G~~~~~~l~~~~~~~~~-~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~--   99 (433)
                      +....+++  .+||-.|++.  |..+..+++ .  .+ . +|++++.+++.++.+++.++..    ...|..+.....  
T Consensus       152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~-~--~G-a~~Vi~~~~~~~~~~~~~~~~g~~----~~~d~~~~~~~~~~  223 (357)
T 2zb4_A          152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGH-F--LG-CSRVVGICGTHEKCILLTSELGFD----AAINYKKDNVAEQL  223 (357)
T ss_dssp             HHSCCCTTSCCEEEESSTTBHHHHHHHHHHH-H--TT-CSEEEEEESCHHHHHHHHHTSCCS----EEEETTTSCHHHHH
T ss_pred             HhcCCCCCCccEEEEECCCcHHHHHHHHHHH-H--CC-CCeEEEEeCCHHHHHHHHHHcCCc----eEEecCchHHHHHH
Confidence            45566788  9999999843  334423333 2  23 5 8999999998888887644221    123443322211  


Q ss_pred             --cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        100 --IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       100 --~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                        ...+.+|+|+.+-.       ...+....++|++||++++..
T Consensus       224 ~~~~~~~~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~G  260 (357)
T 2zb4_A          224 RESCPAGVDVYFDNVG-------GNISDTVISQMNENSHIILCG  260 (357)
T ss_dssp             HHHCTTCEEEEEESCC-------HHHHHHHHHTEEEEEEEEECC
T ss_pred             HHhcCCCCCEEEECCC-------HHHHHHHHHHhccCcEEEEEC
Confidence              11136999987665       146778889999999988753

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=88.30  E-value=0.24  Score=47.45  Aligned_cols=97  Identities=13%  Similarity=0.094  Sum_probs=61.1

Q ss_pred             cCCCCCCEEEEECCC--CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc-----cc
Q psy11646         29 FKWTDNESVLDVGCG--PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES-----IF  101 (433)
Q Consensus        29 l~~~~~~~VLDIGcG--~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~-----~~  101 (433)
                      ...+++.+||-+|++  .|..+..+++ .  .+ .+|++++.+++.++.+++.- .  -..  .|..+..+.+     ..
T Consensus       144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~-~--~G-a~Vi~~~~~~~~~~~~~~~g-a--~~~--~~~~~~~~~~~~~~~~~  214 (334)
T 3qwb_A          144 YHVKKGDYVLLFAAAGGVGLILNQLLK-M--KG-AHTIAVASTDEKLKIAKEYG-A--EYL--INASKEDILRQVLKFTN  214 (334)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHHH-H--TT-CEEEEEESSHHHHHHHHHTT-C--SEE--EETTTSCHHHHHHHHTT
T ss_pred             ccCCCCCEEEEECCCCHHHHHHHHHHH-H--CC-CEEEEEeCCHHHHHHHHHcC-C--cEE--EeCCCchHHHHHHHHhC
Confidence            456789999999953  3444433333 2  23 59999999999999887742 1  111  2322221211     01


Q ss_pred             cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        102 LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       102 ~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ...+|+|+.+-.-       ..+....+.|++||+++...
T Consensus       215 ~~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          215 GKGVDASFDSVGK-------DTFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             TSCEEEEEECCGG-------GGHHHHHHHEEEEEEEEECC
T ss_pred             CCCceEEEECCCh-------HHHHHHHHHhccCCEEEEEc
Confidence            2469999876552       24667788999999988754

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=88.16  E-value=0.22  Score=47.66  Aligned_cols=99  Identities=17%  Similarity=0.163  Sum_probs=62.1

Q ss_pred             HhcCCCCCCEEEEECC-C-CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc-----
Q psy11646         27 DQFKWTDNESVLDVGC-G-PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES-----   99 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGc-G-~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~-----   99 (433)
                      .....+++.+||-.|+ | .|..+..+++ .  .+ .+|++++.+++.++.+++.- ..  ..  .|..+..+.+     
T Consensus       134 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~-~--~G-a~Vi~~~~~~~~~~~~~~~G-a~--~~--~~~~~~~~~~~~~~~  204 (325)
T 3jyn_A          134 QTYQVKPGEIILFHAAAGGVGSLACQWAK-A--LG-AKLIGTVSSPEKAAHAKALG-AW--ET--IDYSHEDVAKRVLEL  204 (325)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHH-H--HT-CEEEEEESSHHHHHHHHHHT-CS--EE--EETTTSCHHHHHHHH
T ss_pred             HhcCCCCCCEEEEEcCCcHHHHHHHHHHH-H--CC-CEEEEEeCCHHHHHHHHHcC-CC--EE--EeCCCccHHHHHHHH
Confidence            3445678999999984 3 3444433333 2  23 58999999999999988652 11  11  2332221211     


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .....+|+|+.+-.-       ..+....+.|++||++++..
T Consensus       205 ~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          205 TDGKKCPVVYDGVGQ-------DTWLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             TTTCCEEEEEESSCG-------GGHHHHHTTEEEEEEEEECC
T ss_pred             hCCCCceEEEECCCh-------HHHHHHHHHhcCCCEEEEEe
Confidence            112469999976552       24667789999999988764

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=87.93  E-value=0.32  Score=46.89  Aligned_cols=98  Identities=12%  Similarity=0.112  Sum_probs=61.5

Q ss_pred             HhcCCCCCCEEEEECCC--CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc----c
Q psy11646         27 DQFKWTDNESVLDVGCG--PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES----I  100 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG--~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~----~  100 (433)
                      +....+++.+||=.|++  .|..+..+++ .  .+ .+|++++.+++.++.+++.- ..  .+.  |... .+.+    .
T Consensus       153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~-~--~G-a~Vi~~~~~~~~~~~~~~~g-a~--~v~--~~~~-~~~~~v~~~  222 (342)
T 4eye_A          153 RRGQLRAGETVLVLGAAGGIGTAAIQIAK-G--MG-AKVIAVVNRTAATEFVKSVG-AD--IVL--PLEE-GWAKAVREA  222 (342)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHH-H--TT-CEEEEEESSGGGHHHHHHHT-CS--EEE--ESST-THHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHH-H--cC-CEEEEEeCCHHHHHHHHhcC-Cc--EEe--cCch-hHHHHHHHH
Confidence            45566789999999973  3455533333 2  23 59999999999888888752 11  222  2221 1111    1


Q ss_pred             c-cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        101 F-LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       101 ~-~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      . ...+|+|+-+-.-.       .+....+.|++||++++..
T Consensus       223 ~~~~g~Dvvid~~g~~-------~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          223 TGGAGVDMVVDPIGGP-------AFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             TTTSCEEEEEESCC---------CHHHHHHTEEEEEEEEEC-
T ss_pred             hCCCCceEEEECCchh-------HHHHHHHhhcCCCEEEEEE
Confidence            1 13699999765532       4667889999999988753

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=87.82  E-value=0.42  Score=45.98  Aligned_cols=97  Identities=11%  Similarity=0.119  Sum_probs=62.2

Q ss_pred             cCCCCCCEEEEECC--CCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc----cc-
Q psy11646         29 FKWTDNESVLDVGC--GPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES----IF-  101 (433)
Q Consensus        29 l~~~~~~~VLDIGc--G~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~----~~-  101 (433)
                      .+.+++.+||-+|+  |.|..+..+++.   .+ .++++++.+++.++.+++. +..  .  ..|..+....+    .. 
T Consensus       162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~---~G-~~Vi~~~~~~~~~~~~~~~-ga~--~--~~d~~~~~~~~~~~~~~~  232 (343)
T 2eih_A          162 LGVRPGDDVLVMAAGSGVSVAAIQIAKL---FG-ARVIATAGSEDKLRRAKAL-GAD--E--TVNYTHPDWPKEVRRLTG  232 (343)
T ss_dssp             SCCCTTCEEEECSTTSTTHHHHHHHHHH---TT-CEEEEEESSHHHHHHHHHH-TCS--E--EEETTSTTHHHHHHHHTT
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHH---CC-CEEEEEeCCHHHHHHHHhc-CCC--E--EEcCCcccHHHHHHHHhC
Confidence            35678999999998  445555344432   23 5899999999999988764 211  1  13443322111    11 


Q ss_pred             cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        102 LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       102 ~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ...+|+|+.+-. .      ..+....+.|+++|+++...
T Consensus       233 ~~~~d~vi~~~g-~------~~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          233 GKGADKVVDHTG-A------LYFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             TTCEEEEEESSC-S------SSHHHHHHHEEEEEEEEESS
T ss_pred             CCCceEEEECCC-H------HHHHHHHHhhccCCEEEEEe
Confidence            247999998765 2      24667788999999987753

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=87.78  E-value=1  Score=43.47  Aligned_cols=97  Identities=19%  Similarity=0.217  Sum_probs=59.0

Q ss_pred             CCCCC------CEEEEECCCC-ChhH-HHHhcccCCCCCcEEEEEeCCHH---HHHHHHhhcCCCCeEEEEecccCCccc
Q psy11646         30 KWTDN------ESVLDVGCGP-GNVT-SKLLLPNLPKSVVKLVGLDVSPN---MIKHAKNHHTNPKLEFVVANIADQNLE   98 (433)
Q Consensus        30 ~~~~~------~~VLDIGcG~-G~~~-~~~l~~~~~~~~~~v~gvDiS~~---~l~~A~~~~~~~~i~~~~~Di~~~~l~   98 (433)
                      ..+++      .+||=+|+|. |..+ ..++.+.  .+..+|+++|.+++   .++.+++.    +....  |..+..+.
T Consensus       163 ~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~--~Ga~~Vi~~~~~~~~~~~~~~~~~l----Ga~~v--~~~~~~~~  234 (357)
T 2b5w_A          163 YASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDD--KGYENLYCLGRRDRPDPTIDIIEEL----DATYV--DSRQTPVE  234 (357)
T ss_dssp             HHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCT--TCCCEEEEEECCCSSCHHHHHHHHT----TCEEE--ETTTSCGG
T ss_pred             CCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHH--cCCcEEEEEeCCcccHHHHHHHHHc----CCccc--CCCccCHH
Confidence            34678      9999999843 2222 2333022  23224999999988   88888764    22322  33322221


Q ss_pred             c---cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         99 S---IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        99 ~---~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +   . .+.+|+|+-.-.-      ...+....+.|+++|+++...
T Consensus       235 ~i~~~-~gg~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          235 DVPDV-YEQMDFIYEATGF------PKHAIQSVQALAPNGVGALLG  273 (357)
T ss_dssp             GHHHH-SCCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred             HHHHh-CCCCCEEEECCCC------hHHHHHHHHHHhcCCEEEEEe
Confidence            1   1 2479999865442      235778889999999988753

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=87.74  E-value=0.41  Score=46.78  Aligned_cols=102  Identities=14%  Similarity=0.179  Sum_probs=64.0

Q ss_pred             HHhcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEeccc--CCccc----
Q psy11646         26 IDQFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIA--DQNLE----   98 (433)
Q Consensus        26 ~~~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~--~~~l~----   98 (433)
                      .+....+++.+||=+|+|. |..+..++ +..  +..+|+++|.+++.++.|++.-    ... ..|..  ...+.    
T Consensus       186 ~~~~~~~~g~~VlV~GaG~vG~~a~q~a-~~~--Ga~~Vi~~~~~~~~~~~a~~lG----a~~-vi~~~~~~~~~~~~i~  257 (378)
T 3uko_A          186 WNTAKVEPGSNVAIFGLGTVGLAVAEGA-KTA--GASRIIGIDIDSKKYETAKKFG----VNE-FVNPKDHDKPIQEVIV  257 (378)
T ss_dssp             HTTTCCCTTCCEEEECCSHHHHHHHHHH-HHH--TCSCEEEECSCTTHHHHHHTTT----CCE-EECGGGCSSCHHHHHH
T ss_pred             HhhcCCCCCCEEEEECCCHHHHHHHHHH-HHc--CCCeEEEEcCCHHHHHHHHHcC----CcE-EEccccCchhHHHHHH
Confidence            3555667899999999864 44443333 332  2238999999999999888652    111 12322  11111    


Q ss_pred             ccccCcEeEEEEcccccchhhHHHHHHHHHHhccCC-CEEEEEe
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPG-GEVLLLL  141 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpG-G~lll~~  141 (433)
                      ....+.+|+|+-.-.-      ...+....+.|++| |++++..
T Consensus       258 ~~~~gg~D~vid~~g~------~~~~~~~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          258 DLTDGGVDYSFECIGN------VSVMRAALECCHKGWGTSVIVG  295 (378)
T ss_dssp             HHTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECS
T ss_pred             HhcCCCCCEEEECCCC------HHHHHHHHHHhhccCCEEEEEc
Confidence            1112479999875442      34678888999997 9988754

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=87.68  E-value=0.61  Score=45.45  Aligned_cols=101  Identities=12%  Similarity=0.115  Sum_probs=62.7

Q ss_pred             HhcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccC--Ccccc----
Q psy11646         27 DQFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD--QNLES----   99 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~--~~l~~----   99 (433)
                      +....+++.+||-+|+|. |..+.. +++..  +..+|+++|.+++.++.+++. +..  ..  .|..+  ..+.+    
T Consensus       189 ~~~~~~~g~~VlV~GaG~vG~~aiq-lak~~--Ga~~Vi~~~~~~~~~~~a~~l-Ga~--~v--i~~~~~~~~~~~~v~~  260 (376)
T 1e3i_A          189 NTAKVTPGSTCAVFGLGCVGLSAII-GCKIA--GASRIIAIDINGEKFPKAKAL-GAT--DC--LNPRELDKPVQDVITE  260 (376)
T ss_dssp             TTSCCCTTCEEEEECCSHHHHHHHH-HHHHT--TCSEEEEECSCGGGHHHHHHT-TCS--EE--ECGGGCSSCHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHH-HHHHc--CCCeEEEEcCCHHHHHHHHHh-CCc--EE--EccccccchHHHHHHH
Confidence            445667899999999764 344423 33332  323899999999999998764 211  11  23221  11111    


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCC-CEEEEEe
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPG-GEVLLLL  141 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpG-G~lll~~  141 (433)
                      ...+.+|+|+-.-.-      ...+....++|++| |++++..
T Consensus       261 ~~~~g~Dvvid~~G~------~~~~~~~~~~l~~~~G~iv~~G  297 (376)
T 1e3i_A          261 LTAGGVDYSLDCAGT------AQTLKAAVDCTVLGWGSCTVVG  297 (376)
T ss_dssp             HHTSCBSEEEESSCC------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             HhCCCccEEEECCCC------HHHHHHHHHHhhcCCCEEEEEC
Confidence            112479999875442      34577888999999 9988753

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=87.58  E-value=0.53  Score=45.83  Aligned_cols=101  Identities=14%  Similarity=0.078  Sum_probs=62.8

Q ss_pred             HhcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccC--Cccc----c
Q psy11646         27 DQFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD--QNLE----S   99 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~--~~l~----~   99 (433)
                      +....+++.+||-+|+|. |..+..+ ++..  +..+|+++|.+++.++.+++. +..  .+  .|..+  ..+.    .
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~aiql-ak~~--Ga~~Vi~~~~~~~~~~~a~~l-Ga~--~v--i~~~~~~~~~~~~i~~  256 (373)
T 1p0f_A          185 NTAKVTPGSTCAVFGLGGVGFSAIVG-CKAA--GASRIIGVGTHKDKFPKAIEL-GAT--EC--LNPKDYDKPIYEVICE  256 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHH-HHHH--TCSEEEEECSCGGGHHHHHHT-TCS--EE--ECGGGCSSCHHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHH-HHHc--CCCeEEEECCCHHHHHHHHHc-CCc--EE--EecccccchHHHHHHH
Confidence            445667899999999764 4444333 3332  213899999999999998864 211  11  22221  1111    1


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCC-CEEEEEe
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPG-GEVLLLL  141 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpG-G~lll~~  141 (433)
                      ...+.+|+|+-.-.-      ...+....++|+++ |++++..
T Consensus       257 ~t~gg~Dvvid~~g~------~~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          257 KTNGGVDYAVECAGR------IETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             HTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             HhCCCCCEEEECCCC------HHHHHHHHHHHhcCCCEEEEEc
Confidence            112479999875442      34577888999999 9988753

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=86.98  E-value=0.7  Score=44.93  Aligned_cols=101  Identities=14%  Similarity=0.152  Sum_probs=62.6

Q ss_pred             HhcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccC--Cccc----c
Q psy11646         27 DQFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD--QNLE----S   99 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~--~~l~----~   99 (433)
                      +....+++.+||-+|+|. |..+..++ +..  +..+|+++|.+++.++.+++.- ..  .+  .|..+  ..+.    .
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~avqla-~~~--Ga~~Vi~~~~~~~~~~~~~~lG-a~--~v--i~~~~~~~~~~~~v~~  255 (373)
T 2fzw_A          184 NTAKLEPGSVCAVFGLGGVGLAVIMGC-KVA--GASRIIGVDINKDKFARAKEFG-AT--EC--INPQDFSKPIQEVLIE  255 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHH-HHH--TCSEEEEECSCGGGHHHHHHHT-CS--EE--ECGGGCSSCHHHHHHH
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHH-HHc--CCCeEEEEcCCHHHHHHHHHcC-Cc--eE--eccccccccHHHHHHH
Confidence            445667899999999764 34443333 322  2138999999999999988652 11  11  23221  1111    1


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCC-CEEEEEe
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPG-GEVLLLL  141 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpG-G~lll~~  141 (433)
                      ...+.+|+|+-.-.-      ...+....++|+++ |++++..
T Consensus       256 ~~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          256 MTDGGVDYSFECIGN------VKVMRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             HTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECS
T ss_pred             HhCCCCCEEEECCCc------HHHHHHHHHhhccCCcEEEEEe
Confidence            112479999875542      34577888999999 9988753

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=86.96  E-value=1.5  Score=36.06  Aligned_cols=98  Identities=18%  Similarity=0.137  Sum_probs=59.0

Q ss_pred             CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc-ccccCcEeEEEEcc
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE-SIFLAKFNKIFSFY  112 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~-~~~~~~fD~Vis~~  112 (433)
                      ..+|+=+|+|.  ++..++..+...+ ..|+++|.+++.++.+++.    ++.+..+|..+...- ......+|.|++..
T Consensus         7 ~~~viIiG~G~--~G~~la~~L~~~g-~~v~vid~~~~~~~~~~~~----g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~   79 (140)
T 3fwz_A            7 CNHALLVGYGR--VGSLLGEKLLASD-IPLVVIETSRTRVDELRER----GVRAVLGNAANEEIMQLAHLECAKWLILTI   79 (140)
T ss_dssp             CSCEEEECCSH--HHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHT----TCEEEESCTTSHHHHHHTTGGGCSEEEECC
T ss_pred             CCCEEEECcCH--HHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHc----CCCEEECCCCCHHHHHhcCcccCCEEEEEC
Confidence            45799998864  4422322222233 6899999999999888763    677888888654221 11125689888754


Q ss_pred             cccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        113 CLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       113 ~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .-..   ....+-...+.+.|+..++...
T Consensus        80 ~~~~---~n~~~~~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           80 PNGY---EAGEIVASARAKNPDIEIIARA  105 (140)
T ss_dssp             SCHH---HHHHHHHHHHHHCSSSEEEEEE
T ss_pred             CChH---HHHHHHHHHHHHCCCCeEEEEE
Confidence            4221   1112333456677887766543

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=86.86  E-value=0.46  Score=45.47  Aligned_cols=98  Identities=12%  Similarity=0.099  Sum_probs=62.2

Q ss_pred             hcCCCCCCEEEEECC--CCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc-----c
Q psy11646         28 QFKWTDNESVLDVGC--GPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES-----I  100 (433)
Q Consensus        28 ~l~~~~~~~VLDIGc--G~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~-----~  100 (433)
                      ..+.+++.+||-.|+  |.|..+..+++.   .+ .+++++|.+++.++.+++. +..  .  ..|..+....+     .
T Consensus       140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~---~G-~~Vi~~~~~~~~~~~~~~~-g~~--~--~~d~~~~~~~~~i~~~~  210 (333)
T 1wly_A          140 THKVKPGDYVLIHAAAGGMGHIMVPWARH---LG-ATVIGTVSTEEKAETARKL-GCH--H--TINYSTQDFAEVVREIT  210 (333)
T ss_dssp             TSCCCTTCEEEETTTTSTTHHHHHHHHHH---TT-CEEEEEESSHHHHHHHHHH-TCS--E--EEETTTSCHHHHHHHHH
T ss_pred             hhCCCCCCEEEEECCccHHHHHHHHHHHH---CC-CEEEEEeCCHHHHHHHHHc-CCC--E--EEECCCHHHHHHHHHHh
Confidence            445678999999995  445555344432   23 5999999999888888764 211  1  12433322111     0


Q ss_pred             ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ....+|+|+.+-.-       ..+....+.|++||+++...
T Consensus       211 ~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          211 GGKGVDVVYDSIGK-------DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             TTCCEEEEEECSCT-------TTHHHHHHTEEEEEEEEECC
T ss_pred             CCCCCeEEEECCcH-------HHHHHHHHhhccCCEEEEEe
Confidence            12469999976552       34677789999999987753

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=86.72  E-value=0.77  Score=44.19  Aligned_cols=93  Identities=11%  Similarity=0.251  Sum_probs=57.4

Q ss_pred             CCCEEEEEC-CCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc---ccccccCcEeE
Q psy11646         33 DNESVLDVG-CGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN---LESIFLAKFNK  107 (433)
Q Consensus        33 ~~~~VLDIG-cG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~---l~~~~~~~fD~  107 (433)
                      ++.+||=+| +|. |..+..++ +.  .+ .+|++++.+++-++.+++.- ..  .+  .|..+..   +.......+|+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla-~~--~G-a~Vi~~~~~~~~~~~~~~lG-a~--~v--i~~~~~~~~~~~~~~~~g~Dv  220 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIA-KA--YG-LRVITTASRNETIEWTKKMG-AD--IV--LNHKESLLNQFKTQGIELVDY  220 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HH--TT-CEEEEECCSHHHHHHHHHHT-CS--EE--ECTTSCHHHHHHHHTCCCEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHH-HH--cC-CEEEEEeCCHHHHHHHHhcC-Cc--EE--EECCccHHHHHHHhCCCCccE
Confidence            789999995 443 44443333 22  23 59999999999999998752 11  11  1222210   11111246999


Q ss_pred             EEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      |+-+..      ....+....++|+++|+++..
T Consensus       221 v~d~~g------~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          221 VFCTFN------TDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             EEESSC------HHHHHHHHHHHEEEEEEEEES
T ss_pred             EEECCC------chHHHHHHHHHhccCCEEEEE
Confidence            987543      234567888999999998754

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=86.60  E-value=0.49  Score=45.74  Aligned_cols=99  Identities=13%  Similarity=0.047  Sum_probs=62.2

Q ss_pred             HhcCCCCCCEEEEECC-C-CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc----c
Q psy11646         27 DQFKWTDNESVLDVGC-G-PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES----I  100 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGc-G-~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~----~  100 (433)
                      +....+++.+||-.|+ | .|..+..+++ .  .+ .+|+++|.+++.++.+++.- ..  ..  .|..+..+.+    .
T Consensus       161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~-~--~G-a~Vi~~~~~~~~~~~~~~lG-a~--~~--~~~~~~~~~~~~~~~  231 (353)
T 4dup_A          161 QMAGLTEGESVLIHGGTSGIGTTAIQLAR-A--FG-AEVYATAGSTGKCEACERLG-AK--RG--INYRSEDFAAVIKAE  231 (353)
T ss_dssp             TTTCCCTTCEEEESSTTSHHHHHHHHHHH-H--TT-CEEEEEESSHHHHHHHHHHT-CS--EE--EETTTSCHHHHHHHH
T ss_pred             HhcCCCCCCEEEEEcCCCHHHHHHHHHHH-H--cC-CEEEEEeCCHHHHHHHHhcC-CC--EE--EeCCchHHHHHHHHH
Confidence            4456678999999954 2 3444433333 2  23 58999999999999988752 11  11  2332221111    1


Q ss_pred             ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ....+|+|+.+-.-.       .+....+.|+++|++++..
T Consensus       232 ~~~g~Dvvid~~g~~-------~~~~~~~~l~~~G~iv~~g  265 (353)
T 4dup_A          232 TGQGVDIILDMIGAA-------YFERNIASLAKDGCLSIIA  265 (353)
T ss_dssp             HSSCEEEEEESCCGG-------GHHHHHHTEEEEEEEEECC
T ss_pred             hCCCceEEEECCCHH-------HHHHHHHHhccCCEEEEEE
Confidence            135799999866532       4667788999999988753

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=86.55  E-value=0.26  Score=47.00  Aligned_cols=98  Identities=14%  Similarity=0.115  Sum_probs=61.4

Q ss_pred             hcCCCCCCEEEEECCC--CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc-----c
Q psy11646         28 QFKWTDNESVLDVGCG--PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES-----I  100 (433)
Q Consensus        28 ~l~~~~~~~VLDIGcG--~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~-----~  100 (433)
                      ..+.+++.+||-.|++  .|..+..+++.   .+ .+|+++|.+++.++.+++. +..  .  ..|..+....+     .
T Consensus       135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~---~G-~~V~~~~~~~~~~~~~~~~-g~~--~--~~~~~~~~~~~~~~~~~  205 (327)
T 1qor_A          135 TYEIKPDEQFLFHAAAGGVGLIACQWAKA---LG-AKLIGTVGTAQKAQSALKA-GAW--Q--VINYREEDLVERLKEIT  205 (327)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHH---HT-CEEEEEESSHHHHHHHHHH-TCS--E--EEETTTSCHHHHHHHHT
T ss_pred             hhCCCCCCEEEEECCCCHHHHHHHHHHHH---cC-CEEEEEeCCHHHHHHHHHc-CCC--E--EEECCCccHHHHHHHHh
Confidence            4456789999999953  34444333332   23 5899999999988888764 211  1  12433221111     0


Q ss_pred             ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ....+|+|+.+-.       ...+....+.|+++|+++...
T Consensus       206 ~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          206 GGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             TTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEECC
T ss_pred             CCCCceEEEECCc-------hHHHHHHHHHhcCCCEEEEEe
Confidence            1246999998765       124677789999999988753

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=86.52  E-value=0.34  Score=46.72  Aligned_cols=100  Identities=19%  Similarity=0.123  Sum_probs=62.0

Q ss_pred             HhcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc----c-
Q psy11646         27 DQFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES----I-  100 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~----~-  100 (433)
                      ...+. ++.+||-+|+|. |..+..++ +..  +..+|+++|.+++.++.+++.- ..  ..  .|..+..+.+    . 
T Consensus       162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a-~~~--Ga~~Vi~~~~~~~~~~~~~~~G-a~--~~--~~~~~~~~~~~v~~~~  232 (348)
T 2d8a_A          162 LAGPI-SGKSVLITGAGPLGLLGIAVA-KAS--GAYPVIVSEPSDFRRELAKKVG-AD--YV--INPFEEDVVKEVMDIT  232 (348)
T ss_dssp             TTSCC-TTCCEEEECCSHHHHHHHHHH-HHT--TCCSEEEECSCHHHHHHHHHHT-CS--EE--ECTTTSCHHHHHHHHT
T ss_pred             HhcCC-CCCEEEEECCCHHHHHHHHHH-HHc--CCCEEEEECCCHHHHHHHHHhC-CC--EE--ECCCCcCHHHHHHHHc
Confidence            45566 899999999853 34443333 222  3128999999999999888642 11  11  2332221211    0 


Q ss_pred             ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ....+|+|+..-..      ...+....+.|+++|+++...
T Consensus       233 ~g~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          233 DGNGVDVFLEFSGA------PKALEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             TTSCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEc
Confidence            11369999876542      345778889999999988753

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=86.28  E-value=0.65  Score=43.99  Aligned_cols=92  Identities=16%  Similarity=0.224  Sum_probs=57.8

Q ss_pred             HhcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcE
Q psy11646         27 DQFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKF  105 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~f  105 (433)
                      ...+.+++.+||=+|+|. |..+..+++ .  .+ .+|++++ +++.++.+++.    +.....-|     .... ...+
T Consensus       136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak-~--~G-a~Vi~~~-~~~~~~~~~~l----Ga~~v~~d-----~~~v-~~g~  200 (315)
T 3goh_A          136 EKIPLTKQREVLIVGFGAVNNLLTQMLN-N--AG-YVVDLVS-ASLSQALAAKR----GVRHLYRE-----PSQV-TQKY  200 (315)
T ss_dssp             TTSCCCSCCEEEEECCSHHHHHHHHHHH-H--HT-CEEEEEC-SSCCHHHHHHH----TEEEEESS-----GGGC-CSCE
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHH-H--cC-CEEEEEE-ChhhHHHHHHc----CCCEEEcC-----HHHh-CCCc
Confidence            556677899999999953 444433333 2  23 5999999 99989998875    22222213     1111 4679


Q ss_pred             eEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        106 NKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       106 D~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      |+|+-.-.-.       .+....+.|+++|+++..
T Consensus       201 Dvv~d~~g~~-------~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          201 FAIFDAVNSQ-------NAAALVPSLKANGHIICI  228 (315)
T ss_dssp             EEEECC--------------TTGGGEEEEEEEEEE
T ss_pred             cEEEECCCch-------hHHHHHHHhcCCCEEEEE
Confidence            9998644321       225567999999998876

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=86.11  E-value=4.7  Score=32.76  Aligned_cols=73  Identities=15%  Similarity=0.170  Sum_probs=47.6

Q ss_pred             CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc-ccccCcEeEEEEcc
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE-SIFLAKFNKIFSFY  112 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~-~~~~~~fD~Vis~~  112 (433)
                      ..+|+=+|+|  .++..++..+...+ .+|+++|.+++.++.+++.    ++.++.+|..+...- ......+|.|+...
T Consensus         6 ~~~v~I~G~G--~iG~~la~~L~~~g-~~V~~id~~~~~~~~~~~~----~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~   78 (141)
T 3llv_A            6 RYEYIVIGSE--AAGVGLVRELTAAG-KKVLAVDKSKEKIELLEDE----GFDAVIADPTDESFYRSLDLEGVSAVLITG   78 (141)
T ss_dssp             CCSEEEECCS--HHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHT----TCEEEECCTTCHHHHHHSCCTTCSEEEECC
T ss_pred             CCEEEEECCC--HHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHC----CCcEEECCCCCHHHHHhCCcccCCEEEEec
Confidence            4579999985  45533333332233 6899999999998887763    567888888763211 11125689888755


Q ss_pred             c
Q psy11646        113 C  113 (433)
Q Consensus       113 ~  113 (433)
                      .
T Consensus        79 ~   79 (141)
T 3llv_A           79 S   79 (141)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=85.93  E-value=0.37  Score=46.67  Aligned_cols=99  Identities=14%  Similarity=-0.057  Sum_probs=61.3

Q ss_pred             HhcCCCCCCEEEEECCC--CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc-----
Q psy11646         27 DQFKWTDNESVLDVGCG--PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES-----   99 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG--~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~-----   99 (433)
                      ...+.+++.+||-.|++  .|..+..+++.   .+ .+++++|.+++.++.+++. +.   . ...|..+....+     
T Consensus       156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~---~G-a~Vi~~~~~~~~~~~~~~~-g~---~-~~~~~~~~~~~~~~~~~  226 (354)
T 2j8z_A          156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRM---AG-AIPLVTAGSQKKLQMAEKL-GA---A-AGFNYKKEDFSEATLKF  226 (354)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHH---TT-CEEEEEESCHHHHHHHHHH-TC---S-EEEETTTSCHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCccHHHHHHHHHHHH---cC-CEEEEEeCCHHHHHHHHHc-CC---c-EEEecCChHHHHHHHHH
Confidence            34556789999999853  34444333332   23 5899999999999888654 21   1 122333221111     


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .....+|+|+.+-.-.       .+....++|++||++++..
T Consensus       227 ~~~~~~d~vi~~~G~~-------~~~~~~~~l~~~G~iv~~G  261 (354)
T 2j8z_A          227 TKGAGVNLILDCIGGS-------YWEKNVNCLALDGRWVLYG  261 (354)
T ss_dssp             TTTSCEEEEEESSCGG-------GHHHHHHHEEEEEEEEECC
T ss_pred             hcCCCceEEEECCCch-------HHHHHHHhccCCCEEEEEe
Confidence            0124699998766531       3566788999999988753

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=85.86  E-value=0.38  Score=46.99  Aligned_cols=70  Identities=16%  Similarity=-0.013  Sum_probs=46.6

Q ss_pred             HHhccCCCEEEEEeccCCchhhHHHhhhcCCCcccccccee--------eeecc----ccCceEEEccccccchHHHHHH
Q psy11646        128 YNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRT--------YRCLL----FTGVIQVQGDITKESTIKEIFS  195 (433)
Q Consensus       128 ~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~--------~~m~p----l~gv~~iqgDi~~~~t~~~il~  195 (433)
                      .+.|+||..++  +++..|           ++|+++...+.        .+|.|    .+++.++++|.....       
T Consensus       206 ~~~l~~G~~vl--DLGAaP-----------GGWT~~l~~rg~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~-------  265 (375)
T 4auk_A          206 DERLANGMWAV--DLGACP-----------GGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFR-------  265 (375)
T ss_dssp             HHHSCTTCEEE--EETCTT-----------CHHHHHHHHTTCEEEEECSSCCCHHHHTTTCEEEECSCTTTCC-------
T ss_pred             hccCCCCCEEE--EeCcCC-----------CHHHHHHHHCCCEEEEEEhhhcChhhccCCCeEEEeCcccccc-------
Confidence            57789997755  557777           66666654332        22332    468889998866543       


Q ss_pred             hcCCCCCeEEEecCCCCCCCCCc
Q psy11646        196 HFDDEKVDLVVFDGAPDVTGLHD  218 (433)
Q Consensus       196 ~~~~~~~dlVvsD~ap~~tG~~~  218 (433)
                       ....++|+|+|||+++.+++..
T Consensus       266 -~~~~~~D~vvsDm~~~p~~~~~  287 (375)
T 4auk_A          266 -PTRSNISWMVCDMVEKPAKVAA  287 (375)
T ss_dssp             -CCSSCEEEEEECCSSCHHHHHH
T ss_pred             -CCCCCcCEEEEcCCCChHHhHH
Confidence             2346899999999998665433

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=85.83  E-value=0.67  Score=44.40  Aligned_cols=58  Identities=12%  Similarity=0.070  Sum_probs=42.3

Q ss_pred             CCeEEEEecccCCcccccccCcEeEEEEcccccc--------------hhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHW--------------VQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        83 ~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~--------------~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ....++++|..+. +....+++||+|++......              .......+.++.++|+|||.+++..
T Consensus        13 ~~~~ii~gD~~~~-l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~   84 (323)
T 1boo_A           13 SNGSMYIGDSLEL-LESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF   84 (323)
T ss_dssp             SSEEEEESCHHHH-GGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCceEEeCcHHHH-HhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEE
Confidence            4567888887542 22233478999999876632              2346778999999999999998864

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=85.38  E-value=2.2  Score=41.25  Aligned_cols=94  Identities=16%  Similarity=0.257  Sum_probs=58.8

Q ss_pred             CCCEEEEEC-CCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc---ccccccCcEeE
Q psy11646         33 DNESVLDVG-CGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN---LESIFLAKFNK  107 (433)
Q Consensus        33 ~~~~VLDIG-cG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~---l~~~~~~~fD~  107 (433)
                      ++.+||=+| +|. |..+..++ +..  ++.+|+++|.+++.++.+++. +..  .+  .|..+..   +.....+.+|+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qla-k~~--~g~~Vi~~~~~~~~~~~~~~l-Gad--~v--i~~~~~~~~~v~~~~~~g~Dv  242 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIA-RQR--TDLTVIATASRPETQEWVKSL-GAH--HV--IDHSKPLAAEVAALGLGAPAF  242 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHH-HHH--CCSEEEEECSSHHHHHHHHHT-TCS--EE--ECTTSCHHHHHHTTCSCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHh--cCCEEEEEeCCHHHHHHHHHc-CCC--EE--EeCCCCHHHHHHHhcCCCceE
Confidence            788999998 443 45553333 321  225999999999999998874 211  11  1222210   11111257999


Q ss_pred             EEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      |+-+-.      -...+....++|+++|++++.
T Consensus       243 vid~~g------~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          243 VFSTTH------TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEECSC------HHHHHHHHHHHSCTTCEEEEC
T ss_pred             EEECCC------chhhHHHHHHHhcCCCEEEEE
Confidence            987543      234677888999999998875

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=85.19  E-value=0.54  Score=45.99  Aligned_cols=101  Identities=20%  Similarity=0.153  Sum_probs=61.6

Q ss_pred             HhcC-CCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEeccc---CCc----c
Q psy11646         27 DQFK-WTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIA---DQN----L   97 (433)
Q Consensus        27 ~~l~-~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~---~~~----l   97 (433)
                      .... .+++.+||-+|+|. |..+.. +++..  +..+|++++.+++.++.+++. +..  .++  |..   +..    +
T Consensus       188 ~~~~~~~~g~~VlV~GaG~vG~~aiq-lak~~--Ga~~Vi~~~~~~~~~~~~~~l-Ga~--~vi--~~~~~~~~~~~~~v  259 (380)
T 1vj0_A          188 DEYPESFAGKTVVIQGAGPLGLFGVV-IARSL--GAENVIVIAGSPNRLKLAEEI-GAD--LTL--NRRETSVEERRKAI  259 (380)
T ss_dssp             HTCSSCCBTCEEEEECCSHHHHHHHH-HHHHT--TBSEEEEEESCHHHHHHHHHT-TCS--EEE--ETTTSCHHHHHHHH
T ss_pred             HhcCCCCCCCEEEEECcCHHHHHHHH-HHHHc--CCceEEEEcCCHHHHHHHHHc-CCc--EEE--eccccCcchHHHHH
Confidence            4456 67899999999653 333423 33332  214899999999999999864 211  122  221   111    1


Q ss_pred             cccc-cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         98 ESIF-LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        98 ~~~~-~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .... ...+|+|+-.-.-      ...+....+.|+++|+++...
T Consensus       260 ~~~~~g~g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~G  298 (380)
T 1vj0_A          260 MDITHGRGADFILEATGD------SRALLEGSELLRRGGFYSVAG  298 (380)
T ss_dssp             HHHTTTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECC
T ss_pred             HHHhCCCCCcEEEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence            1111 1369999876542      135677889999999988753

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=85.01  E-value=2.1  Score=38.92  Aligned_cols=59  Identities=25%  Similarity=0.235  Sum_probs=36.9

Q ss_pred             cCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEee
Q psy11646        175 TGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFR  251 (433)
Q Consensus       175 ~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~  251 (433)
                      .++..+++|.+......    .+ ...+|+|++|++..       +   +   .......+.+.|+|||.|++-+..
T Consensus       125 ~nv~~i~~Da~~~~~~~----~~-~~~~D~I~~d~a~~-------~---~---~~il~~~~~~~LkpGG~lvisik~  183 (232)
T 3id6_C          125 PNIFPLLADARFPQSYK----SV-VENVDVLYVDIAQP-------D---Q---TDIAIYNAKFFLKVNGDMLLVIKA  183 (232)
T ss_dssp             TTEEEEECCTTCGGGTT----TT-CCCEEEEEECCCCT-------T---H---HHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             CCeEEEEcccccchhhh----cc-ccceEEEEecCCCh-------h---H---HHHHHHHHHHhCCCCeEEEEEEcc
Confidence            46677788876543221    11 34799999998751       1   1   122245566789999999987533

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=84.62  E-value=1.7  Score=37.04  Aligned_cols=78  Identities=18%  Similarity=0.175  Sum_probs=56.4

Q ss_pred             ceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHH
Q psy11646        177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVV  256 (433)
Q Consensus       177 v~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~  256 (433)
                      +...++|+.+..         ....+|+|+++..-.     .     ........+.-+.++|++||.+++-........
T Consensus       104 ~~~~~~d~~~~~---------~~~~~D~v~~~~~~~-----~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~  164 (194)
T 1dus_A          104 IRVVHSDLYENV---------KDRKYNKIITNPPIR-----A-----GKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAK  164 (194)
T ss_dssp             EEEEECSTTTTC---------TTSCEEEEEECCCST-----T-----CHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHH
T ss_pred             eEEEECchhccc---------ccCCceEEEECCCcc-----c-----chhHHHHHHHHHHHHcCCCCEEEEEECCCCChH
Confidence            667777765532         245799999865321     1     122344567778899999999999998887777


Q ss_pred             HHHHHHhcccceeEEec
Q psy11646        257 CLETKFQIFFENVSIAK  273 (433)
Q Consensus       257 ~~~~~l~~~F~~v~~~K  273 (433)
                      .+...++..|..+.+.+
T Consensus       165 ~~~~~l~~~~~~~~~~~  181 (194)
T 1dus_A          165 SLAKYMKDVFGNVETVT  181 (194)
T ss_dssp             HHHHHHHHHHSCCEEEE
T ss_pred             HHHHHHHHHhcceEEEe
Confidence            78888888898888764

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=84.38  E-value=0.66  Score=44.95  Aligned_cols=99  Identities=11%  Similarity=0.107  Sum_probs=60.0

Q ss_pred             cCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC-cccccccCcEe
Q psy11646         29 FKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ-NLESIFLAKFN  106 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~-~l~~~~~~~fD  106 (433)
                      .+.+++.+||-+|+|. |..+..+++ .  .+ .+|+++|.+++.++.+++. +..  .+  .|..+. .......+.+|
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~~~qlak-~--~G-a~Vi~~~~~~~~~~~~~~l-Ga~--~v--~~~~~~~~~~~~~~~~~D  245 (360)
T 1piw_A          175 NGCGPGKKVGIVGLGGIGSMGTLISK-A--MG-AETYVISRSSRKREDAMKM-GAD--HY--IATLEEGDWGEKYFDTFD  245 (360)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHH-H--HT-CEEEEEESSSTTHHHHHHH-TCS--EE--EEGGGTSCHHHHSCSCEE
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHH-H--CC-CEEEEEcCCHHHHHHHHHc-CCC--EE--EcCcCchHHHHHhhcCCC
Confidence            5667899999999853 444433333 2  23 4899999999989988874 211  12  232221 11111115799


Q ss_pred             EEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        107 KIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       107 ~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +|+-.-.-..    ...+....++|++||+++..
T Consensus       246 ~vid~~g~~~----~~~~~~~~~~l~~~G~iv~~  275 (360)
T 1piw_A          246 LIVVCASSLT----DIDFNIMPKAMKVGGRIVSI  275 (360)
T ss_dssp             EEEECCSCST----TCCTTTGGGGEEEEEEEEEC
T ss_pred             EEEECCCCCc----HHHHHHHHHHhcCCCEEEEe
Confidence            9997654300    11244567899999998765

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=84.34  E-value=8.7  Score=33.05  Aligned_cols=60  Identities=12%  Similarity=-0.053  Sum_probs=40.3

Q ss_pred             HHHHHHHHHhccCCCeEEEEEeecCCHHHHHHHHh---cccceeEEecCCCCcccccceeEEEeecc
Q psy11646        229 IGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQ---IFFENVSIAKPKSSRNSSIESFIVCQNYR  292 (433)
Q Consensus       229 ~~al~ia~~~L~~gG~fv~Kif~g~~~~~~~~~l~---~~F~~v~~~KP~~sr~~s~E~~~v~~~~~  292 (433)
                      ...+.-+.++|++||.+++=.+.-.....+...++   ..|..+.+.+..+.+    +.+++++...
T Consensus       144 ~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~~~~~~~~~~----~r~~~~~~~~  206 (215)
T 4dzr_A          144 RRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRVRKVKDLRGI----DRVIAVTREP  206 (215)
T ss_dssp             HHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEECCEEECTTSC----EEEEEEEECC
T ss_pred             HHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceEEEEEecCCC----EEEEEEEEcC
Confidence            55667778999999994444444444555555554   668888888776654    6677777644

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=84.16  E-value=3.4  Score=32.02  Aligned_cols=76  Identities=12%  Similarity=0.018  Sum_probs=47.7

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcc
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFY  112 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~  112 (433)
                      .+.+|+=+|+  |..+..++..+...+..+++++|.++..++.++.    .++.+...|+.+...-...-..+|+|+..-
T Consensus         4 ~~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~   77 (118)
T 3ic5_A            4 MRWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR----MGVATKQVDAKDEAGLAKALGGFDAVISAA   77 (118)
T ss_dssp             TCEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT----TTCEEEECCTTCHHHHHHHTTTCSEEEECS
T ss_pred             CcCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh----CCCcEEEecCCCHHHHHHHHcCCCEEEECC
Confidence            3568999998  5555344333322332689999999988777662    467778888765321111124689998876


Q ss_pred             cc
Q psy11646        113 CL  114 (433)
Q Consensus       113 ~l  114 (433)
                      ..
T Consensus        78 ~~   79 (118)
T 3ic5_A           78 PF   79 (118)
T ss_dssp             CG
T ss_pred             Cc
Confidence            53

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=84.02  E-value=1.7  Score=42.10  Aligned_cols=99  Identities=19%  Similarity=0.264  Sum_probs=59.1

Q ss_pred             hcCCC-CCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC-cccccccCc
Q psy11646         28 QFKWT-DNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ-NLESIFLAK  104 (433)
Q Consensus        28 ~l~~~-~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~-~l~~~~~~~  104 (433)
                      ..... ++.+||=+|+|. |..+..++ +.  .+ .+|++++.+++.++.+++.++..  .+  .|..+. .+.. ..+.
T Consensus       181 ~~~~~~~g~~VlV~GaG~vG~~~~q~a-~~--~G-a~Vi~~~~~~~~~~~~~~~lGa~--~v--~~~~~~~~~~~-~~~~  251 (366)
T 1yqd_A          181 YFGLDEPGKHIGIVGLGGLGHVAVKFA-KA--FG-SKVTVISTSPSKKEEALKNFGAD--SF--LVSRDQEQMQA-AAGT  251 (366)
T ss_dssp             HTTCCCTTCEEEEECCSHHHHHHHHHH-HH--TT-CEEEEEESCGGGHHHHHHTSCCS--EE--EETTCHHHHHH-TTTC
T ss_pred             hcCcCCCCCEEEEECCCHHHHHHHHHH-HH--CC-CEEEEEeCCHHHHHHHHHhcCCc--eE--EeccCHHHHHH-hhCC
Confidence            34556 899999999753 33332222 22  23 58999999999888887555322  11  232221 0111 1246


Q ss_pred             EeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        105 FNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       105 fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +|+|+..-....      .++...+.|+++|+++...
T Consensus       252 ~D~vid~~g~~~------~~~~~~~~l~~~G~iv~~g  282 (366)
T 1yqd_A          252 LDGIIDTVSAVH------PLLPLFGLLKSHGKLILVG  282 (366)
T ss_dssp             EEEEEECCSSCC------CSHHHHHHEEEEEEEEECC
T ss_pred             CCEEEECCCcHH------HHHHHHHHHhcCCEEEEEc
Confidence            999997654321      2345678899999988753

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=83.89  E-value=2.2  Score=40.37  Aligned_cols=98  Identities=10%  Similarity=0.073  Sum_probs=59.2

Q ss_pred             hcCCCCCC-EEEEECC--CCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc-ccccccC
Q psy11646         28 QFKWTDNE-SVLDVGC--GPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN-LESIFLA  103 (433)
Q Consensus        28 ~l~~~~~~-~VLDIGc--G~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~-l~~~~~~  103 (433)
                      ....+++. +||=.|+  |.|..+..+++ .  .+ .+|++++.+++-++.+++.- ..  ..+  |..+.. ......+
T Consensus       140 ~~~~~~~~g~VlV~Ga~G~vG~~aiqla~-~--~G-a~Vi~~~~~~~~~~~~~~lG-a~--~vi--~~~~~~~~~~~~~~  210 (324)
T 3nx4_A          140 DAGIRPQDGEVVVTGASGGVGSTAVALLH-K--LG-YQVAAVSGRESTHGYLKSLG-AN--RIL--SRDEFAESRPLEKQ  210 (324)
T ss_dssp             HTTCCGGGCCEEESSTTSHHHHHHHHHHH-H--TT-CCEEEEESCGGGHHHHHHHT-CS--EEE--EGGGSSCCCSSCCC
T ss_pred             hcccCCCCCeEEEECCCcHHHHHHHHHHH-H--cC-CEEEEEeCCHHHHHHHHhcC-CC--EEE--ecCCHHHHHhhcCC
Confidence            34444422 4998887  34555533333 3  23 58999999999999998752 11  111  222111 1112235


Q ss_pred             cEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        104 KFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       104 ~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .+|+|+-.-.       ...+....+.|+++|+++...
T Consensus       211 ~~d~v~d~~g-------~~~~~~~~~~l~~~G~iv~~G  241 (324)
T 3nx4_A          211 LWAGAIDTVG-------DKVLAKVLAQMNYGGCVAACG  241 (324)
T ss_dssp             CEEEEEESSC-------HHHHHHHHHTEEEEEEEEECC
T ss_pred             CccEEEECCC-------cHHHHHHHHHHhcCCEEEEEe
Confidence            7999876543       127888899999999988753

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=83.88  E-value=0.72  Score=44.35  Aligned_cols=96  Identities=16%  Similarity=0.213  Sum_probs=60.8

Q ss_pred             HhcCCCCCCEEEEECCC--CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc-----
Q psy11646         27 DQFKWTDNESVLDVGCG--PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES-----   99 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG--~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~-----   99 (433)
                      +....+++.+||=+|++  .|..+..+++ .  .+ .+|+++ .+++.++.+++.-    ...  .| ....+.+     
T Consensus       144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~-~--~G-a~Vi~~-~~~~~~~~~~~lG----a~~--i~-~~~~~~~~~~~~  211 (343)
T 3gaz_A          144 DRAQVQDGQTVLIQGGGGGVGHVAIQIAL-A--RG-ARVFAT-ARGSDLEYVRDLG----ATP--ID-ASREPEDYAAEH  211 (343)
T ss_dssp             TTTCCCTTCEEEEETTTSHHHHHHHHHHH-H--TT-CEEEEE-ECHHHHHHHHHHT----SEE--EE-TTSCHHHHHHHH
T ss_pred             HhcCCCCCCEEEEecCCCHHHHHHHHHHH-H--CC-CEEEEE-eCHHHHHHHHHcC----CCE--ec-cCCCHHHHHHHH
Confidence            55666789999999953  3445533333 2  23 589999 8999888887752    222  22 2211211     


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .....+|+|+-+-.-       ..+....+.|+++|+++...
T Consensus       212 ~~~~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          212 TAGQGFDLVYDTLGG-------PVLDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             HTTSCEEEEEESSCT-------HHHHHHHHHEEEEEEEEESC
T ss_pred             hcCCCceEEEECCCc-------HHHHHHHHHHhcCCeEEEEc
Confidence            112469999875541       35777888999999988753

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=83.82  E-value=2.4  Score=44.86  Aligned_cols=105  Identities=13%  Similarity=0.146  Sum_probs=63.7

Q ss_pred             CCCEEEEECCCCChhHHHHhccc------CCC---CCcEEEEEeC---CHHHHHHHHhhc--------------------
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPN------LPK---SVVKLVGLDV---SPNMIKHAKNHH--------------------   80 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~------~~~---~~~~v~gvDi---S~~~l~~A~~~~--------------------   80 (433)
                      +..+|+|+|.|+|......++..      .|.   .-.+++.++.   +...+..|-..+                    
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            45689999999998775554421      111   1257999998   556555433211                    


Q ss_pred             ------CC--CCeEEEEecccCCcccccc---cCcEeEEEEcccccc-hhh--HHHHHHHHHHhccCCCEEE
Q psy11646         81 ------TN--PKLEFVVANIADQNLESIF---LAKFNKIFSFYCLHW-VQD--QRQAISNIYNLLMPGGEVL  138 (433)
Q Consensus        81 ------~~--~~i~~~~~Di~~~~l~~~~---~~~fD~Vis~~~l~~-~~d--~~~~l~~i~~~LkpGG~ll  138 (433)
                            ..  -.+++..+|+.+. +++..   ...+|.++.-..--. -++  ...++..+.++++|||.+.
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~-l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~  208 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTL-LPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFS  208 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHH-GGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEE
T ss_pred             ceEEEecCCcEEEEEEccCHHHH-HhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEE
Confidence                  01  1355667777553 33321   368999988432111 011  2568899999999999865

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=83.26  E-value=0.33  Score=46.72  Aligned_cols=97  Identities=22%  Similarity=0.279  Sum_probs=59.9

Q ss_pred             hcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCc-EEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc----cc
Q psy11646         28 QFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVV-KLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES----IF  101 (433)
Q Consensus        28 ~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~-~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~----~~  101 (433)
                      ..+. ++.+||-+|+|. |..+..+ ++..  + . +|+++|.+++.++.+++. . .  .  ..|..+..+.+    ..
T Consensus       160 ~~~~-~g~~VlV~GaG~vG~~~~q~-a~~~--G-a~~Vi~~~~~~~~~~~~~~l-a-~--~--v~~~~~~~~~~~~~~~~  228 (343)
T 2dq4_A          160 GSGV-SGKSVLITGAGPIGLMAAMV-VRAS--G-AGPILVSDPNPYRLAFARPY-A-D--R--LVNPLEEDLLEVVRRVT  228 (343)
T ss_dssp             TTCC-TTSCEEEECCSHHHHHHHHH-HHHT--T-CCSEEEECSCHHHHGGGTTT-C-S--E--EECTTTSCHHHHHHHHH
T ss_pred             hCCC-CCCEEEEECCCHHHHHHHHH-HHHc--C-CCEEEEECCCHHHHHHHHHh-H-H--h--ccCcCccCHHHHHHHhc
Confidence            5566 899999999853 3444233 3322  3 4 899999999887777653 1 1  1  12332211111    01


Q ss_pred             cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        102 LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       102 ~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ...+|+|+-.-.-      ...++...+.|+++|+++...
T Consensus       229 ~~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~g  262 (343)
T 2dq4_A          229 GSGVEVLLEFSGN------EAAIHQGLMALIPGGEARILG  262 (343)
T ss_dssp             SSCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence            2469999876542      245778889999999988753

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=82.87  E-value=1.4  Score=43.36  Aligned_cols=99  Identities=14%  Similarity=0.108  Sum_probs=57.8

Q ss_pred             CCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc----c-ccC
Q psy11646         30 KWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES----I-FLA  103 (433)
Q Consensus        30 ~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~----~-~~~  103 (433)
                      ..+++.+||=+|+|. |..+. .+++..  +..+|+++|.+++-++.+++.-    ... ..|..+..+.+    . ...
T Consensus       210 ~~~~g~~VlV~GaG~vG~~ai-qlak~~--Ga~~Vi~~~~~~~~~~~~~~lG----a~~-vi~~~~~~~~~~i~~~t~g~  281 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAV-AILKHA--GASKVILSEPSEVRRNLAKELG----ADH-VIDPTKENFVEAVLDYTNGL  281 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHH-HHHHHT--TCSEEEEECSCHHHHHHHHHHT----CSE-EECTTTSCHHHHHHHHTTTC
T ss_pred             CCCCCCEEEEECCCHHHHHHH-HHHHHc--CCCEEEEECCCHHHHHHHHHcC----CCE-EEcCCCCCHHHHHHHHhCCC
Confidence            467899999999854 33332 233332  3238999999999999998762    111 12222211111    1 113


Q ss_pred             cEeEEEEcccccchhhHHHHHHHHHHhc----cCCCEEEEEe
Q psy11646        104 KFNKIFSFYCLHWVQDQRQAISNIYNLL----MPGGEVLLLL  141 (433)
Q Consensus       104 ~fD~Vis~~~l~~~~d~~~~l~~i~~~L----kpGG~lll~~  141 (433)
                      .+|+|+-.-.-     ....+..+.+.|    ++||++++..
T Consensus       282 g~D~vid~~g~-----~~~~~~~~~~~l~~~~~~~G~iv~~G  318 (404)
T 3ip1_A          282 GAKLFLEATGV-----PQLVWPQIEEVIWRARGINATVAIVA  318 (404)
T ss_dssp             CCSEEEECSSC-----HHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred             CCCEEEECCCC-----cHHHHHHHHHHHHhccCCCcEEEEeC
Confidence            69999865442     222334444455    9999988754

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=82.86  E-value=5.2  Score=34.15  Aligned_cols=99  Identities=11%  Similarity=0.132  Sum_probs=56.2

Q ss_pred             CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcc-ccc-ccCcEeEEEEc
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL-ESI-FLAKFNKIFSF  111 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l-~~~-~~~~fD~Vis~  111 (433)
                      +.+|+=+|+|  ..+..++..+...++.+|+++|.+++.++.+++.    ++....+|..+... ... ....+|+|+..
T Consensus        39 ~~~v~IiG~G--~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~----g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~  112 (183)
T 3c85_A           39 HAQVLILGMG--RIGTGAYDELRARYGKISLGIEIREEAAQQHRSE----GRNVISGDATDPDFWERILDTGHVKLVLLA  112 (183)
T ss_dssp             TCSEEEECCS--HHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHT----TCCEEECCTTCHHHHHTBCSCCCCCEEEEC
T ss_pred             CCcEEEECCC--HHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHC----CCCEEEcCCCCHHHHHhccCCCCCCEEEEe
Confidence            5689999875  4442333222222025899999999988877753    45667777654321 111 12568988875


Q ss_pred             ccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        112 YCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       112 ~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      -.-.   .....+-...+.+.|++.++...
T Consensus       113 ~~~~---~~~~~~~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          113 MPHH---QGNQTALEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             CSSH---HHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             CCCh---HHHHHHHHHHHHHCCCCEEEEEE
Confidence            4311   11122233455566777776643

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=82.82  E-value=1.8  Score=41.88  Aligned_cols=90  Identities=22%  Similarity=0.204  Sum_probs=55.9

Q ss_pred             CCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCH---HHHHHHHhhcCCCCeEEEEecccCCccccc---ccCcEe
Q psy11646         34 NESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSP---NMIKHAKNHHTNPKLEFVVANIADQNLESI---FLAKFN  106 (433)
Q Consensus        34 ~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~---~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~---~~~~fD  106 (433)
                      +.+||-+|+|. |..+..+++ .  .+ .+|+++|.++   +.++.+++.    +....  | .+ .+.+.   ..+.+|
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~-~--~G-a~Vi~~~~~~~~~~~~~~~~~~----ga~~v--~-~~-~~~~~~~~~~~~~d  248 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFR-T--YG-LEVWMANRREPTEVEQTVIEET----KTNYY--N-SS-NGYDKLKDSVGKFD  248 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHH-H--HT-CEEEEEESSCCCHHHHHHHHHH----TCEEE--E-CT-TCSHHHHHHHCCEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH-h--CC-CEEEEEeCCccchHHHHHHHHh----CCcee--c-hH-HHHHHHHHhCCCCC
Confidence            99999999832 223322222 2  23 4999999998   777877754    22322  3 32 22110   115699


Q ss_pred             EEEEcccccchhhHHHHH-HHHHHhccCCCEEEEEe
Q psy11646        107 KIFSFYCLHWVQDQRQAI-SNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       107 ~Vis~~~l~~~~d~~~~l-~~i~~~LkpGG~lll~~  141 (433)
                      +|+.+-...      ..+ +...+.|+++|+++...
T Consensus       249 ~vid~~g~~------~~~~~~~~~~l~~~G~iv~~g  278 (366)
T 2cdc_A          249 VIIDATGAD------VNILGNVIPLLGRNGVLGLFG  278 (366)
T ss_dssp             EEEECCCCC------THHHHHHGGGEEEEEEEEECS
T ss_pred             EEEECCCCh------HHHHHHHHHHHhcCCEEEEEe
Confidence            998766532      145 77889999999988753

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=82.81  E-value=8.9  Score=35.37  Aligned_cols=71  Identities=7%  Similarity=-0.071  Sum_probs=45.7

Q ss_pred             ceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeec----
Q psy11646        177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRS----  252 (433)
Q Consensus       177 v~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g----  252 (433)
                      +.++++|..+...         ...+|+|++|..+..               ...+.-+..+|+|||.+++-.+..    
T Consensus       177 v~~~~~D~~~~~~---------~~~fD~Vi~~~p~~~---------------~~~l~~~~~~LkpgG~l~~~~~~~~~~~  232 (278)
T 2frn_A          177 MSAYNMDNRDFPG---------ENIADRILMGYVVRT---------------HEFIPKALSIAKDGAIIHYHNTVPEKLM  232 (278)
T ss_dssp             EEEECSCTTTCCC---------CSCEEEEEECCCSSG---------------GGGHHHHHHHEEEEEEEEEEEEEEGGGT
T ss_pred             EEEEECCHHHhcc---------cCCccEEEECCchhH---------------HHHHHHHHHHCCCCeEEEEEEeeccccc
Confidence            5677777665432         567999999755322               334566778999999999988874    


Q ss_pred             --CCHHHHHHHHhcccceeEE
Q psy11646        253 --RNVVCLETKFQIFFENVSI  271 (433)
Q Consensus       253 --~~~~~~~~~l~~~F~~v~~  271 (433)
                        .....+...++..--.+..
T Consensus       233 ~~~~~~~i~~~~~~~G~~~~~  253 (278)
T 2frn_A          233 PREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             TTTTHHHHHHHHHHTTCEEEE
T ss_pred             cccHHHHHHHHHHHcCCeeEE
Confidence              2245555555444334444

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=82.70  E-value=4.2  Score=35.41  Aligned_cols=89  Identities=16%  Similarity=0.186  Sum_probs=56.1

Q ss_pred             CCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecC--------------CHHHHHHHHh
Q psy11646        198 DDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSR--------------NVVCLETKFQ  263 (433)
Q Consensus       198 ~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~--------------~~~~~~~~l~  263 (433)
                      ....+|+|++...-     +.+.    ..-....+.-+.++|+|||.+++-...+.              ....+...++
T Consensus        99 ~~~~fD~v~~~~~l-----~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  169 (211)
T 3e23_A           99 AIDAYDAVWAHACL-----LHVP----RDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYA  169 (211)
T ss_dssp             CCSCEEEEEECSCG-----GGSC----HHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHH
T ss_pred             CCCcEEEEEecCch-----hhcC----HHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHH
Confidence            35679999986532     1111    12234567777889999999999876654              4566777776


Q ss_pred             c-c-cceeEEecC-CCCcccccceeEEEeeccCCC
Q psy11646        264 I-F-FENVSIAKP-KSSRNSSIESFIVCQNYRPPK  295 (433)
Q Consensus       264 ~-~-F~~v~~~KP-~~sr~~s~E~~~v~~~~~~~~  295 (433)
                      . - |+.+.+..- ...-....+.++.+...+++.
T Consensus       170 ~aG~f~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~  204 (211)
T 3e23_A          170 EAGTWASVAVESSEGKGFDQELAQFLHVSVRKPEL  204 (211)
T ss_dssp             HHCCCSEEEEEEEEEECTTSCEEEEEEEEEECCCC
T ss_pred             hCCCcEEEEEEeccCCCCCCCCceEEEEEEecCcc
Confidence            4 4 888887753 222334455666666665544

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=81.69  E-value=1.8  Score=41.69  Aligned_cols=99  Identities=16%  Similarity=0.182  Sum_probs=59.0

Q ss_pred             hcCCC-CCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC-cccccccCc
Q psy11646         28 QFKWT-DNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ-NLESIFLAK  104 (433)
Q Consensus        28 ~l~~~-~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~-~l~~~~~~~  104 (433)
                      ..... ++.+||=+|+|. |..+..+ ++.  .+ .++++++.+++.++.+++.++...+  +  |..+. .... ..+.
T Consensus       174 ~~~~~~~g~~VlV~GaG~vG~~a~ql-ak~--~G-a~Vi~~~~~~~~~~~~~~~lGa~~v--i--~~~~~~~~~~-~~~g  244 (357)
T 2cf5_A          174 HFGLKQPGLRGGILGLGGVGHMGVKI-AKA--MG-HHVTVISSSNKKREEALQDLGADDY--V--IGSDQAKMSE-LADS  244 (357)
T ss_dssp             HTSTTSTTCEEEEECCSHHHHHHHHH-HHH--HT-CEEEEEESSTTHHHHHHTTSCCSCE--E--ETTCHHHHHH-STTT
T ss_pred             hcCCCCCCCEEEEECCCHHHHHHHHH-HHH--CC-CeEEEEeCChHHHHHHHHHcCCcee--e--ccccHHHHHH-hcCC
Confidence            34566 899999999753 2333222 222  23 5899999999988888855532221  1  22111 0111 1246


Q ss_pred             EeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        105 FNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       105 fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +|+|+-.-.-.      ..+....++|++||+++...
T Consensus       245 ~D~vid~~g~~------~~~~~~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          245 LDYVIDTVPVH------HALEPYLSLLKLDGKLILMG  275 (357)
T ss_dssp             EEEEEECCCSC------CCSHHHHTTEEEEEEEEECS
T ss_pred             CCEEEECCCCh------HHHHHHHHHhccCCEEEEeC
Confidence            99998765422      12445678999999988753

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=81.19  E-value=9.2  Score=30.45  Aligned_cols=96  Identities=11%  Similarity=0.058  Sum_probs=54.5

Q ss_pred             CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcc-cccccCcEeEEEEcc
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL-ESIFLAKFNKIFSFY  112 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l-~~~~~~~fD~Vis~~  112 (433)
                      +.+|+=+|+  |..+..++..+...+ .+++++|.+++.++.+++..   ++.+..+|..+... .......+|+|+..-
T Consensus         4 ~m~i~IiG~--G~iG~~~a~~L~~~g-~~v~~~d~~~~~~~~~~~~~---~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~   77 (140)
T 1lss_A            4 GMYIIIAGI--GRVGYTLAKSLSEKG-HDIVLIDIDKDICKKASAEI---DALVINGDCTKIKTLEDAGIEDADMYIAVT   77 (140)
T ss_dssp             -CEEEEECC--SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC---SSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHhc---CcEEEEcCCCCHHHHHHcCcccCCEEEEee
Confidence            467888887  555533333222233 68999999998887776543   45566677653211 111124689988875


Q ss_pred             cccchhhHHHHHHHHHHhccCCCEEEE
Q psy11646        113 CLHWVQDQRQAISNIYNLLMPGGEVLL  139 (433)
Q Consensus       113 ~l~~~~d~~~~l~~i~~~LkpGG~lll  139 (433)
                      .-.   .....+..+.+.+.++ .++.
T Consensus        78 ~~~---~~~~~~~~~~~~~~~~-~ii~  100 (140)
T 1lss_A           78 GKE---EVNLMSSLLAKSYGIN-KTIA  100 (140)
T ss_dssp             SCH---HHHHHHHHHHHHTTCC-CEEE
T ss_pred             CCc---hHHHHHHHHHHHcCCC-EEEE
Confidence            432   1223444555667775 4444

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=80.82  E-value=0.75  Score=43.78  Aligned_cols=98  Identities=12%  Similarity=0.134  Sum_probs=57.9

Q ss_pred             hcCCCCCC-EEEEECC--CCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC---cccccc
Q psy11646         28 QFKWTDNE-SVLDVGC--GPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ---NLESIF  101 (433)
Q Consensus        28 ~l~~~~~~-~VLDIGc--G~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~---~l~~~~  101 (433)
                      ....+++. +||-+|+  |.|..+..+++ .  .+ .++++++.+++.++.+++. +..  ..+  |..+.   ......
T Consensus       143 ~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~-~--~G-a~vi~~~~~~~~~~~~~~l-Ga~--~~i--~~~~~~~~~~~~~~  213 (328)
T 1xa0_A          143 EHGLTPERGPVLVTGATGGVGSLAVSMLA-K--RG-YTVEASTGKAAEHDYLRVL-GAK--EVL--AREDVMAERIRPLD  213 (328)
T ss_dssp             HTTCCGGGCCEEESSTTSHHHHHHHHHHH-H--TT-CCEEEEESCTTCHHHHHHT-TCS--EEE--ECC---------CC
T ss_pred             hcCCCCCCceEEEecCCCHHHHHHHHHHH-H--CC-CEEEEEECCHHHHHHHHHc-CCc--EEE--ecCCcHHHHHHHhc
Confidence            34556775 8999997  34445533333 2  23 4799999998888888764 211  111  21111   011111


Q ss_pred             cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        102 LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       102 ~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .+.+|+|+-+-.-       ..+....+.|+++|++++..
T Consensus       214 ~~~~d~vid~~g~-------~~~~~~~~~l~~~G~~v~~G  246 (328)
T 1xa0_A          214 KQRWAAAVDPVGG-------RTLATVLSRMRYGGAVAVSG  246 (328)
T ss_dssp             SCCEEEEEECSTT-------TTHHHHHHTEEEEEEEEECS
T ss_pred             CCcccEEEECCcH-------HHHHHHHHhhccCCEEEEEe
Confidence            2469999876542       14667788999999988753

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=80.77  E-value=1.2  Score=41.75  Aligned_cols=92  Identities=13%  Similarity=0.199  Sum_probs=58.5

Q ss_pred             CCCCCEEEEECC--CCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccC-CcccccccCcEeE
Q psy11646         31 WTDNESVLDVGC--GPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD-QNLESIFLAKFNK  107 (433)
Q Consensus        31 ~~~~~~VLDIGc--G~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~-~~l~~~~~~~fD~  107 (433)
                      .+++.+||-+|+  |.|..+..+++ .  .+ .+|++++.+++.++.+++. +..  ..  .|..+ ..+.+.. ..+|+
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~-~--~G-a~Vi~~~~~~~~~~~~~~~-ga~--~~--~~~~~~~~~~~~~-~~~d~  192 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVAR-A--MG-LRVLAAASRPEKLALPLAL-GAE--EA--ATYAEVPERAKAW-GGLDL  192 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHH-H--TT-CEEEEEESSGGGSHHHHHT-TCS--EE--EEGGGHHHHHHHT-TSEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHH-H--CC-CEEEEEeCCHHHHHHHHhc-CCC--EE--EECCcchhHHHHh-cCceE
Confidence            578999999997  33455533333 2  23 5899999999988888763 211  11  23322 1111111 56999


Q ss_pred             EEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      |+. -.-       ..+....+.|+++|+++..
T Consensus       193 vid-~g~-------~~~~~~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          193 VLE-VRG-------KEVEESLGLLAHGGRLVYI  217 (302)
T ss_dssp             EEE-CSC-------TTHHHHHTTEEEEEEEEEC
T ss_pred             EEE-CCH-------HHHHHHHHhhccCCEEEEE
Confidence            987 432       2467788999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	433
d1ej0a_	180	c.66.1.2 (A:) RNA methyltransferase FtsJ {Escheric	1e-20
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	4e-14
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	2e-13
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	1e-11
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	1e-10
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	3e-10
d2p41a1	257	c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-	9e-10
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	1e-09
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	3e-09
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	1e-07
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-07
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	3e-07
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	4e-07
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	6e-07
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	8e-07
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	1e-06
d1o54a_	266	c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo	2e-06
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	2e-06
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	3e-06
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	4e-06
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	4e-06
d1g8aa_	227	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro	7e-06
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	1e-05
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	1e-05
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	1e-05
d1xtpa_	254	c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa	2e-05
d2bzga1	229	c.66.1.36 (A:17-245) Thiopurine S-methyltransferas	2e-05
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	3e-05
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	4e-05
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	5e-05
d2nxca1	254	c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT	1e-04
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	2e-04
d1p91a_	268	c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher	2e-04
d1dusa_	194	c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeo	2e-04
d1m6ya2	192	c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransf	3e-04
d1im8a_	225	c.66.1.14 (A:) Hypothetical protein HI0319 (YecO)	3e-04
d1i4wa_	322	c.66.1.24 (A:) Transcription factor sc-mtTFB {Bake	0.001
d1i1na_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	0.001
d2frna1	260	c.66.1.47 (A:19-278) Hypothetical protein PH0793 {	0.002

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} Length = 180

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

 Score = 86.8 bits (214), Expect = 1e-20
 Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 2/170 (1%)

Query: 124 ISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQGD 183
           I     L  PG  V+ L  A  P       +++                   GV  +QGD
Sbjct: 13  IQQSDKLFKPGMTVVDLGAA--PGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGD 70

Query: 184 ITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGG 243
              E  +K +     D KV +V+ D AP+++G   +D      L+  AL +   +L PGG
Sbjct: 71  FRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGG 130

Query: 244 TFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRP 293
           +FV K+F+         + +  F  V + KP SSR  S E +IV    +P
Sbjct: 131 SFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKP 180

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 69.3 bits (168), Expect = 4e-14
 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 15/155 (9%)

Query: 17  DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHA 76
           D AKL+           NE VLDV  G G+V +          V K+V  D++ +++K A
Sbjct: 3   DLAKLM----QIAALKGNEEVLDVATGGGHVANAFA-----PFVKKVVAFDLTEDILKVA 53

Query: 77  KNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGE 136
           +        + V     D         +F+ +      H   +    +S  Y +L  GG+
Sbjct: 54  RAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQ 113

Query: 137 VLLL------LNAFNPIYDLYEKLSRKPKWTEYTQ 165
           +LL+       +AF+  Y+  EK         + +
Sbjct: 114 LLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKK 148

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (164), Expect = 2e-13
 Identities = 30/224 (13%), Positives = 77/224 (34%), Gaps = 20/224 (8%)

Query: 1   MHKATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLL---LPNLP 57
           ++ +T ++            ++ +  D         +L +G G G +  ++L       P
Sbjct: 11  LNHSTEHQCMQEFMDKKLPGIIGRIGDT---KSEIKILSIGGGAGEIDLQILSKVQAQYP 67

Query: 58  KSVVKLVGLDVSPNMIKHAKNH---------HTNPKLEFVVANIADQNLESIFLAKFNKI 108
              +    ++ S   I   K                 +   +    + LE   L K++ I
Sbjct: 68  GVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFI 127

Query: 109 FSFYCLHWVQDQRQAISNIYNLLMPGGE-VLLLLNAFNPIYDLYEKLSRK---PKWTEYT 164
                L++V+D    +   ++LL    + ++++++  +    L++K   +       +Y 
Sbjct: 128 HMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYI 187

Query: 165 QVRTYRCLLFTGVIQVQG-DITKESTIKEIFSHFDDEKVDLVVF 207
                  +L    ++ +  D+     I + F   ++    L  F
Sbjct: 188 TSDDLTQMLDNLGLKYECYDLLSTMDISDCFIDGNENGDLLWDF 231

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 62.3 bits (150), Expect = 1e-11
 Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 11/145 (7%)

Query: 26  IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKL 85
           I   +      VLD+G G G+             V + +G+D +  M++ A +      +
Sbjct: 9   IKTAECRAEHRVLDIGAGAGHTALAFS-----PYVQECIGVDATKEMVEVASSFAQEKGV 63

Query: 86  EFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL----- 140
           E V                F+ I   Y  H   D R+A+  +  +L   G  LL+     
Sbjct: 64  ENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAP 123

Query: 141 -LNAFNPIYDLYEKLSRKPKWTEYT 164
                +   +   +L       E +
Sbjct: 124 EDPVLDEFVNHLNRLRDPSHVRESS 148

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 59.5 bits (143), Expect = 1e-10
 Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 4/123 (3%)

Query: 29  FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFV 88
           +K T    ++D GCG G +   L+L  L     K  G+D    ++  A+        +  
Sbjct: 23  WKITKPVHIVDYGCGYGYLG--LVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSE 80

Query: 89  VANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIY 148
                   +E     K++       L  +      +  + + +  GG+++     +    
Sbjct: 81  FLEGDATEIE--LNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNM 138

Query: 149 DLY 151
             Y
Sbjct: 139 ASY 141

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 58.1 bits (139), Expect = 3e-10
 Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 4/135 (2%)

Query: 5   TLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLV 64
           T+ E+ + +      +  +      +      +LD+G G G +             +   
Sbjct: 5   TISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWA----RDHGITGT 60

Query: 65  GLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAI 124
           G+D+S      AK       +   V  I +     +   K +                A 
Sbjct: 61  GIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAE 120

Query: 125 SNIYNLLMPGGEVLL 139
             +   L PGG +L+
Sbjct: 121 ELLAQSLKPGGIMLI 135

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

 Score = 56.8 bits (137), Expect = 9e-10
 Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 9/110 (8%)

Query: 182 GDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKP 241
            ++ +  +  ++F     E+ D ++ D     +    ++        +  LN+    L  
Sbjct: 114 WNLVRLQSGVDVF-FIPPERCDTLLCDIGES-SPNPTVEAGRT----LRVLNLVENWLSN 167

Query: 242 GGTFVGKIFR--SRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQ 289
              F  K+      +V+      Q       +  P  SRNS+ E + V  
Sbjct: 168 NTQFCVKVLNPYMSSVIEKMEALQRKHGGALVRNP-LSRNSTHEMYWVSN 216

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 55.9 bits (133), Expect = 1e-09
 Identities = 18/147 (12%), Positives = 38/147 (25%), Gaps = 20/147 (13%)

Query: 15  QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIK 74
           Q +  K L QY           VL   CG     S L           +VG ++S   ++
Sbjct: 2   QSEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLS-----GQGYHVVGAELSEAAVE 56

Query: 75  HAKNHHTNPKLEFVVANIA-------------DQNLESIFLAKFNKIFSFYCLHWVQDQ- 120
                           +                  L +  +      +    +  +    
Sbjct: 57  RYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADM 116

Query: 121 -RQAISNIYNLLMPGGEVLLLLNAFNP 146
             + + ++  L+      LL+   ++ 
Sbjct: 117 RERYVQHLEALMPQACSGLLITLEYDQ 143

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 55.3 bits (132), Expect = 3e-09
 Identities = 38/193 (19%), Positives = 70/193 (36%), Gaps = 24/193 (12%)

Query: 34  NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK----NHHTNPKLEFVV 89
            +SVLD+GCG G    K         + +  G+D++   I  A+    N     K+ F  
Sbjct: 25  GDSVLDLGCGKGGDLLKY----ERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRA 80

Query: 90  ANIADQNLESIFLAKFNKIFSFYCLHWV----QDQRQAISNIYNLLMPGGEVLLLLNAFN 145
            +   ++++     +F+ I S +  H+     +    A  NI   L PGG  ++ + + +
Sbjct: 81  QDSYGRHMDLGK--EFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRD 138

Query: 146 PIYDLYEKLSRKPKW----------TEYTQVRTYRCLLFTGVIQVQGDITKESTIKEIFS 195
            I + Y++      +               VR YR  L   V          + + + F 
Sbjct: 139 VILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFK 198

Query: 196 HFDDEKVDLVVFD 208
                 V+   F 
Sbjct: 199 RLGLSLVERKGFI 211

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.3 bits (119), Expect = 1e-07
 Identities = 34/213 (15%), Positives = 63/213 (29%), Gaps = 24/213 (11%)

Query: 4   ATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKL 63
           A +++      +   A+  +  +   +      VLDV CG G  +  L+     +    +
Sbjct: 27  ARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLV-----EEGFSV 81

Query: 64  VGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFL--------AKFNKIFSFYCLH 115
             +D S  M+K+A     N + E        +    + L             I       
Sbjct: 82  TSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFA 141

Query: 116 WV-------QDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRT 168
            +        + R A+ NI +++ PGG    LL   +  YD        P          
Sbjct: 142 HLPDSKGDQSEHRLALKNIASMVRPGG----LLVIDHRNYDYILSTGCAPPGKNIYYKSD 197

Query: 169 YRCLLFTGVIQVQGDITKESTIKEIFSHFDDEK 201
               + T V+ V       +    +        
Sbjct: 198 LTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRD 230

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 2e-07
 Identities = 20/163 (12%), Positives = 50/163 (30%), Gaps = 19/163 (11%)

Query: 20  KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH 79
            L++Q ID+ K TD++  +D+G G G V  ++      K      G++ +    K+A+  
Sbjct: 138 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHH---YGVEKADIPAKYAETM 194

Query: 80  ------------HTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNI 127
                         + +      +    + E         +       +  +    +   
Sbjct: 195 DREFRKWMKWYGKKHAEYTLERGDF--LSEEWRERIANTSVIFVNNFAFGPEVDHQLKER 252

Query: 128 YNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYR 170
           +  +  GG ++         + +  +           +V    
Sbjct: 253 FANMKEGGRIVSSKPFAPLNFRINSR--NLSDIGTIMRVVELS 293

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 48.5 bits (115), Expect = 3e-07
 Identities = 21/127 (16%), Positives = 43/127 (33%), Gaps = 8/127 (6%)

Query: 18  AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHA- 76
           AA +L     + K   +E VL +G   G   S L        +     ++ S    +   
Sbjct: 43  AAMILK--GHRLKLRGDERVLYLGAASGTTVSHLADIVDEGII---YAVEYSAKPFEKLL 97

Query: 77  KNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGE 136
           +       +  ++ + +     S  + K + I+               +N    L   GE
Sbjct: 98  ELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKN--QIEILKANAEFFLKEKGE 155

Query: 137 VLLLLNA 143
           V++++ A
Sbjct: 156 VVIMVKA 162

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.7 bits (118), Expect = 4e-07
 Identities = 18/133 (13%), Positives = 38/133 (28%), Gaps = 15/133 (11%)

Query: 20  KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH 79
             LS    Q +    ++ +D+G G GN   +  L           G ++  +        
Sbjct: 203 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALS---FGCEIMDDASDLTILQ 259

Query: 80  HTNPKLEFVVANIADQNLESIFLAKFNKIFSF------------YCLHWVQDQRQAISNI 127
           +   K    +  +   N+E      F                      + +D  + +  I
Sbjct: 260 YEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKI 319

Query: 128 YNLLMPGGEVLLL 140
                 G +++ L
Sbjct: 320 LQTAKVGCKIISL 332

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 48.1 bits (114), Expect = 6e-07
 Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 11/139 (7%)

Query: 35  ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD 94
             +L+VG G GN++S +L     K  +    ++   + +K A ++ +    EF       
Sbjct: 87  MDILEVGVGSGNMSSYILYALNGKGTL--TVVERDEDNLKKAMDNLS----EFYDIGNVR 140

Query: 95  QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKL 154
            +   I     ++++              +  I +++ PG      L  F+        L
Sbjct: 141 TSRSDIADFISDQMYDAVIADIPDPW-NHVQKIASMMKPGSVATFYLPNFDQSEKTVLSL 199

Query: 155 SRKPKWTEYTQVRTYRCLL 173
           S          + T   + 
Sbjct: 200 SASG----MHHLETVELMK 214

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 47.1 bits (111), Expect = 8e-07
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 15/141 (10%)

Query: 34  NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK----NHHTNPKLEFVV 89
           N+  +DVGCG G VT       L   V ++  +D +P  I   +     H     +  + 
Sbjct: 34  NDVAVDVGCGTGGVT-----LELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLME 88

Query: 90  ANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYD 149
            +  +   +   +   +          +Q+  +    I + L PGG +++        ++
Sbjct: 89  GDAPEALCK---IPDIDIAVVGGSGGELQEILRI---IKDKLKPGGRIIVTAILLETKFE 142

Query: 150 LYEKLSRKPKWTEYTQVRTYR 170
             E L         T++   R
Sbjct: 143 AMECLRDLGFDVNITELNIAR 163

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 47.0 bits (110), Expect = 1e-06
 Identities = 26/189 (13%), Positives = 59/189 (31%), Gaps = 15/189 (7%)

Query: 19  AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN 78
              + +   +    +   VLD+ CG G          L +   ++VG  +  +       
Sbjct: 27  IDFVEEIFKEDAKREVRRVLDLACGTGI-----PTLELAERGYEVVG--LDLHEEMLRVA 79

Query: 79  HHTNPKLEFVVANIADQNLESIFLAKFNK---IFSFYCLHWVQDQRQAISNIYNLLMPGG 135
                +    +  +    LE  F  +F+     FS       +D R+  S +   L PGG
Sbjct: 80  RRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGG 139

Query: 136 EVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQGDITKESTIKEIFS 195
             + + +     Y   +       W E         + +  V      +  +  ++ +  
Sbjct: 140 --VFITDFPCWFYGGRDGPVV---WNEQKGEEKLVIMDWREVEPAVQKLRFKRLVQILRP 194

Query: 196 HFDDEKVDL 204
           + + +   +
Sbjct: 195 NGEVKAFLV 203

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 11/165 (6%)

Query: 1   MHKATLYETNNSM---QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLP 57
           +   +L +   +M    Q+   K  S         + + ++D G G G +    +L    
Sbjct: 68  ILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMC--AVLARAV 125

Query: 58  KSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWV 117
            S  K+   +      K A+++ T    ++ +       +  I    F++         V
Sbjct: 126 GSSGKVFAYEKREEFAKLAESNLT----KWGLIERVTIKVRDIS-EGFDEKDVDALFLDV 180

Query: 118 QDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTE 162
            D    I   +  L  GG    +    N + +  +KL ++  +  
Sbjct: 181 PDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKL-QELPFIR 224

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 18/171 (10%), Positives = 43/171 (25%), Gaps = 42/171 (24%)

Query: 30  KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVV 89
                ++++D+G GP      +L        +     D +    +  +         +  
Sbjct: 48  GGLQGDTLIDIGSGPTIYQ--VLAACDSFQDI--TLSDFTDRNREELEKWLKKEPGAYDW 103

Query: 90  ANI----------------------------------ADQNLESIFLAKFNKIFSFYCLH 115
                                                    L    L   + + +   + 
Sbjct: 104 TPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAME 163

Query: 116 WV----QDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTE 162
                    R A+ N+ +LL PGG ++  +    P Y + ++        +
Sbjct: 164 CACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEK 214

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 32/192 (16%), Positives = 66/192 (34%), Gaps = 12/192 (6%)

Query: 1   MHKATLYETNNSMQ---QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLP 57
           + +  L +   SM    Q+   K  +Q + +        VL+ G G G +T  L L    
Sbjct: 61  VLRPLLVDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALT--LSLLRAV 118

Query: 58  KSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWV 117
               +++  +   +  +HA+ + +    +    N      +       +       L  +
Sbjct: 119 GPAGQVISYEQRADHAEHARRNVSGCYGQ-PPDNWRLVVSDLADSELPDGSVDRAVLD-M 176

Query: 118 QDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGV 177
               + +  +  LL+ GG +++ +     +  + E L  K  WTE    R +  L     
Sbjct: 177 LAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTE---PRAWETLQRG-- 231

Query: 178 IQVQGDITKEST 189
             V G   +   
Sbjct: 232 WNVVGLAVRPQH 243

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 45.7 bits (107), Expect = 4e-06
 Identities = 21/150 (14%), Positives = 48/150 (32%), Gaps = 14/150 (9%)

Query: 21  LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH 80
           ++  +   F+     ++L++G   G+ TS+L      +    +  ++ S   I HA+   
Sbjct: 11  MVRAFTPFFR---PGNLLELGSFKGDFTSRLQ-----EHFNDITCVEASEEAISHAQGRL 62

Query: 81  TNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIY-NLLMPGGEVLL 139
            +            Q        +++ I   + L  + D    +  I  + L  GG + L
Sbjct: 63  KDGITYIHSRFEDAQLPR-----RYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFL 117

Query: 140 LLNAFNPIYDLYEKLSRKPKWTEYTQVRTY 169
           +    N +                     +
Sbjct: 118 VCPNANAVSRQIAVKMGIISHNSAVTEAEF 147

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 45.5 bits (107), Expect = 4e-06
 Identities = 16/121 (13%), Positives = 39/121 (32%), Gaps = 5/121 (4%)

Query: 18  AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK 77
           AA ++   +       +  +L +G   G   S  +     K +V    ++ +P +++   
Sbjct: 60  AAAIIK-GLKVMPIKRDSKILYLGASAGTTPS-HVADIADKGIV--YAIEYAPRIMRELL 115

Query: 78  NHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEV 137
           +     +    +   A++  E   +        +  +         I N    L  GG  
Sbjct: 116 DACAERENIIPILGDANKPQEYANIV-EKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYG 174

Query: 138 L 138
           +
Sbjct: 175 M 175

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.7 bits (105), Expect = 7e-06
 Identities = 20/128 (15%), Positives = 46/128 (35%), Gaps = 6/128 (4%)

Query: 17  DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHA 76
             A ++   +  F     +SVL +G   G   S +   ++     K+ G++ SP +++  
Sbjct: 58  LGAAIM-NGLKNFPIKPGKSVLYLGIASGTTASHVS--DIVGWEGKIFGIEFSPRVLREL 114

Query: 77  KNH-HTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGG 135
                    +  ++ +          + K + I  F  +      +  I N    L  GG
Sbjct: 115 VPIVEERRNIVPILGDATKPEEYRALVPKVDVI--FEDVAQPTQAKILIDNAEVYLKRGG 172

Query: 136 EVLLLLNA 143
             ++ + +
Sbjct: 173 YGMIAVKS 180

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 21/129 (16%), Positives = 37/129 (28%), Gaps = 8/129 (6%)

Query: 23  SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN 82
           S  +   K       LD+GCG G       L                 +M    +     
Sbjct: 20  SDVLAAAKVVAPGRTLDLGCGNGR----NSLYLAANGYDVTAWDKNPASMANLERIKAAE 75

Query: 83  PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWV--QDQRQAISNIYNLLMPGGEVLLL 140
                    +    L      +++ I S   + ++  Q     I+N+     PGG  L++
Sbjct: 76  GLDNLQTDLVDLNTLTFDG--EYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIV 133

Query: 141 LNAFNPIYD 149
                P + 
Sbjct: 134 AAMDTPDFP 142

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 19/148 (12%), Positives = 47/148 (31%), Gaps = 12/148 (8%)

Query: 34  NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN-------HHTNPKLE 86
            ++VL+ G G G ++  L      +  V  +  +V  +    AK              +E
Sbjct: 99  GDTVLEAGSGSGGMSLFLSKAVGSQGRV--ISFEVRKDHHDLAKKNYKHWRDSWKLSHVE 156

Query: 87  FVVANIADQNLESIFLAKFNKIFSF-YCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFN 145
               N+   + +     +  K  +F      + +    +   Y  L  GG   + +    
Sbjct: 157 EWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNIT 216

Query: 146 PIYDLYEKLSRKPKWTEYTQVRTYRCLL 173
            + +L + +         +  +    ++
Sbjct: 217 QVIELLDGIRTCELA--LSCEKISEVIV 242

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 8/137 (5%)

Query: 19  AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN 78
           +  + +   +      +  LD+ CG GN+T  L              +D+S  M+  A+N
Sbjct: 24  SDFIIEKCVENN-LVFDDYLDLACGTGNLTENLC-----PKFKNTWAVDLSQEMLSEAEN 77

Query: 79  HHT--NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGE 136
                  K      +I++ N+   F      + S   +    D ++    + N L  GG 
Sbjct: 78  KFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGV 137

Query: 137 VLLLLNAFNPIYDLYEK 153
            +  +N++  +  +   
Sbjct: 138 FIFDINSYYKLSQVLGN 154

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 8/136 (5%)

Query: 20  KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH 79
           +    +I           LD G G G +T  LL     K       L+   +M++ AK  
Sbjct: 80  EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLT----KLYATTDLLEPVKHMLEEAKRE 135

Query: 80  HTNPKLEFVVANIADQNLESIFLAKFNKIFS--FYCLHWVQDQRQAISNIYNLLMPGGEV 137
                +   +  +A     ++    ++ I            D  +   +    L P G +
Sbjct: 136 LAGMPVGKFI--LASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYI 193

Query: 138 LLLLNAFNPIYDLYEK 153
               N       L +K
Sbjct: 194 FFKENCSTGDRFLVDK 209

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 26/147 (17%)

Query: 21  LLSQYIDQF-KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH 79
           LL +++D F K      V    CG                   +VG+++S   I+     
Sbjct: 32  LLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFA-----DRGHSVVGVEISELGIQEFFTE 86

Query: 80  HTNPKLEFVVANIADQ------------------NLESIFLAKFNKIFSFYCLH--WVQD 119
                 E  +  I                     +L    + KF+ I+    L      D
Sbjct: 87  QNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGD 146

Query: 120 QRQAISNIYNLLMPGGEVLLLLNAFNP 146
           ++     +++LL    + LL + +++P
Sbjct: 147 RKCYADTMFSLLGKKFQYLLCVLSYDP 173

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 7/108 (6%)

Query: 34  NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN---PKLEFVVA 90
           ++ VLDVG G G +   +         V  +G++ S       K    N     +  +  
Sbjct: 34  DKVVLDVGSGTGILC--MFAAKAGARKV--IGIECSSISDYAVKIVKANKLDHVVTIIKG 89

Query: 91  NIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVL 138
            + +  L    +      +  YCL +       +      L P G + 
Sbjct: 90  KVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (100), Expect = 4e-05
 Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 9/109 (8%)

Query: 34  NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLE----FVV 89
           ++ VLDVGCG G ++         K   K V      ++I+ AK              + 
Sbjct: 39  DKIVLDVGCGTGILSMFAA-----KHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLR 93

Query: 90  ANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVL 138
             + D +L    +      +  Y L +       +    + L+ GG + 
Sbjct: 94  GKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 5e-05
 Identities = 20/144 (13%), Positives = 37/144 (25%), Gaps = 44/144 (30%)

Query: 35  ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVAN--- 91
            +++D+G GP          +       +   D      +            F  +    
Sbjct: 56  RTLIDIGSGPTVYQLLSACSH----FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQ 111

Query: 92  ---------------------------IADQNLESIFLA------KFNKIFSFYCLHWV- 117
                                        D +      A        + + S +CL  V 
Sbjct: 112 HACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVS 171

Query: 118 ---QDQRQAISNIYNLLMPGGEVL 138
                 ++A+ +I  LL PGG +L
Sbjct: 172 PDLASFQRALDHITTLLRPGGHLL 195

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 10/118 (8%)

Query: 22  LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT 81
           L+           + VLD+G G G +              K +G+D+ P ++  A+ +  
Sbjct: 109 LALKALARHLRPGDKVLDLGTGSGVLAIAAEKLG-----GKALGVDIDPMVLPQAEANAK 163

Query: 82  NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
              +                   F          + +            L+PGG  LL
Sbjct: 164 RNGV-----RPRFLEGSLEAALPFGPFDLLVANLYAELHAALAPRYREALVPGGRALL 216

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 10/118 (8%)

Query: 24  QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN- 82
           Q    FK   ++ VLDVGCG G ++  +         V  +G+D S  + +       N 
Sbjct: 29  QNPHIFK---DKVVLDVGCGTGILS--MFAAKAGAKKV--LGVDQSEILYQAMDIIRLNK 81

Query: 83  --PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVL 138
               +  +   I + +L    +      +  Y L +       +      L  GG V 
Sbjct: 82  LEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 20/151 (13%)

Query: 13  MQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNM 72
           ++    A+L  +  D+        VLD+GCG G  T       LP+  +   GLDVS   
Sbjct: 69  LRDAIVAQLRERLDDKATA-----VLDIGCGEGYYT-HAFADALPE--ITTFGLDVSKVA 120

Query: 73  IKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLM 132
           IK A   +         ++    +  S      + I   Y     ++       +  ++ 
Sbjct: 121 IKAAAKRYPQVTFCVASSHRLPFSDTS-----MDAIIRIYAPCKAEE-------LARVVK 168

Query: 133 PGGEVLLLLNAFNPIYDLYEKLSRKPKWTEY 163
           PGG V+        + +L   +  +      
Sbjct: 169 PGGWVITATPGPRHLMELKGLIYNEVHLHAP 199

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 194

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 24/147 (16%), Positives = 55/147 (37%), Gaps = 9/147 (6%)

Query: 12  SMQQLD-AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSP 70
           S  ++D   K+L   ++      ++ +LD+GCG G +   L       ++  +    +  
Sbjct: 33  SYGKVDKGTKIL---VENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKL 89

Query: 71  NMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQA-ISNIYN 129
                  N+  N  +  V +++ +         K+NKI +   +   ++     I     
Sbjct: 90  AKENIKLNNLDNYDIRVVHSDLYENV----KDRKYNKIITNPPIRAGKEVLHRIIEEGKE 145

Query: 130 LLMPGGEVLLLLNAFNPIYDLYEKLSR 156
           LL   GE+ +++        L + +  
Sbjct: 146 LLKDNGEIWVVIQTKQGAKSLAKYMKD 172

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} Length = 192

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 23/152 (15%), Positives = 65/152 (42%), Gaps = 17/152 (11%)

Query: 21  LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH 80
           ++ + I+  K  D + +LD   G G   S+ +L + P    +++G+DV   +++ A+   
Sbjct: 11  MVREVIEFLKPEDEKIILDCTVGEGG-HSRAILEHCPG--CRIIGIDVDSEVLRIAEEKL 67

Query: 81  TNPK------------LEFVVANIADQNLESIFLAKFNKIFSFYC-LHWVQDQRQAISNI 127
                            +F++  +  + ++ I +      +        +++ ++ +   
Sbjct: 68  KEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKA 127

Query: 128 YNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPK 159
            +LL PGG  +++++  +    + ++  R  K
Sbjct: 128 EDLLNPGGR-IVVISFHSLEDRIVKETFRNSK 158

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 3/119 (2%)

Query: 20  KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH 79
             +    ++F  T + +V D+GC  G  T      N+ +  VK++G+D S  M++  + H
Sbjct: 27  TAIGMLAERF-VTADSNVYDLGCSRGAAT-LSARRNINQPNVKIIGIDNSQPMVERCRQH 84

Query: 80  HTNPKLEFVVANIADQNLESIFLA-KFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEV 137
                 E  V  + +              +         +D+   ++ IY  L P G +
Sbjct: 85  IAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVL 143

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 322

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 27  DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLE 86
             +K  +   VLD+  G G  ++       P+   +   L+   ++ K          L+
Sbjct: 37  KTYKHPEELKVLDLYPGVGIQSAIFYNKYCPR---QYSLLEKRSSLYKFLNAKFEGSPLQ 93

Query: 87  FVVANIADQNLESIFLAKF 105
            +  +  D +  S  + + 
Sbjct: 94  ILKRDPYDWSTYSNLIDEE 112

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 3/102 (2%)

Query: 34  NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIA 93
               LDVG G G +T       +     K++G+D    ++  + N+        + +   
Sbjct: 77  GAKALDVGSGSGILT--ACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGR- 133

Query: 94  DQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGG 135
            Q +       + +   +  +H           + + L PGG
Sbjct: 134 VQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGG 175

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 19/146 (13%), Positives = 52/146 (35%), Gaps = 17/146 (11%)

Query: 33  DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANI 92
            +E V+D+  G G+    L LP       K++ ++  P   K    +    K+E  ++  
Sbjct: 107 PDELVVDMFAGIGH----LSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY 162

Query: 93  ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA-----FNPI 147
              N +       ++I   Y +       + I    ++   G  +               
Sbjct: 163 NMDNRDFPGENIADRILMGYVVRT----HEFIPKALSIAKDGAIIHYHNTVPEKLMPREP 218

Query: 148 YDLYEKLSRKPKWT----EYTQVRTY 169
           ++ +++++++  +        +++ Y
Sbjct: 219 FETFKRITKEYGYDVEKLNELKIKRY 244

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	433
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	99.97
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.82
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.81
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.76
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.76
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.75
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.75
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.73
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.72
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.72
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.71
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.68
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.68
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.67
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.67
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.66
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.65
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	99.64
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.64
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.64
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.64
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.64
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.63
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.62
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.62
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.59
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.58
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.58
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.56
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.55
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.55
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.54
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.52
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.51
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.5
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.5
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.49
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.45
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.45
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.44
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.42
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.42
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.41
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.41
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.41
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.38
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.34
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.32
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.29
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.26
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.25
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.23
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.23
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.19
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.12
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.02
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.01
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.99
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.98
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.95
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.95
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.92
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.92
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.89
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.88
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.88
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.88
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.83
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.81
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.81
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.76
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.74
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.71
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.69
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.63
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.62
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.62
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.53
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.52
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.5
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.49
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.46
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.46
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.45
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.41
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.38
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.27
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.26
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.21
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.2
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.11
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.1
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.08
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.06
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.01
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.0
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.0
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.99
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.46
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.26
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	96.93
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.87
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.81
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.53
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.38
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.33
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.32
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.77
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.56
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.51
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.39
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.34
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.34
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.01
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.98
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.97
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.88
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	94.8
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	94.07
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	93.66
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.64
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.55
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.45
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	93.37
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	92.81
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	92.61
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	92.45
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	92.29
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	92.15
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	91.76
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	91.56
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	91.54
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	90.31
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	89.4
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	88.6
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	88.36
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	87.81
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	87.72
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	84.64
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	83.99
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	83.74
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	83.22
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	82.95
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	81.68
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	81.25

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=7.6e-31  Score=233.54  Aligned_cols=119  Identities=33%  Similarity=0.489  Sum_probs=104.2

Q ss_pred             cCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCC
Q psy11646        175 TGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRN  254 (433)
Q Consensus       175 ~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~  254 (433)
                      +++.++++|+.+..+...+.......++|+|+|||+|++||..+.||..+.+|+.+++.+|.++|++||+||+|+|+|.+
T Consensus        62 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~  141 (180)
T d1ej0a_          62 VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG  141 (180)
T ss_dssp             TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT
T ss_pred             CCceEeecccccchhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCcc
Confidence            33334444444444444455555556799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccceeEEecCCCCcccccceeEEEeeccC
Q psy11646        255 VVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRP  293 (433)
Q Consensus       255 ~~~~~~~l~~~F~~v~~~KP~~sr~~s~E~~~v~~~~~~  293 (433)
                      ...|...++.+|++|++.||.|||++|+|+|+||+||||
T Consensus       142 ~~~l~~~l~~~F~~V~~~KP~aSR~~SsE~Ylv~~g~Kp  180 (180)
T d1ej0a_         142 FDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKP  180 (180)
T ss_dssp             HHHHHHHHHHHEEEEEEECCTTSCTTCCEEEEEEEEECC
T ss_pred             HHHHHHHHHhhcCEEEEECCCCcccCCceEEEEEecCCC
Confidence            999999999999999999999999999999999999986

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.82  E-value=3.2e-20  Score=170.49  Aligned_cols=114  Identities=25%  Similarity=0.434  Sum_probs=98.3

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCccc
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLE   98 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~   98 (433)
                      +.++++....+++.+|||||||+|.++. .+++.   + .+|+|+|+|+.|++.|+++.   ..+++++.++|+++.+++
T Consensus         4 ~~~ll~~~~l~~~~rVLDiGcG~G~~~~-~l~~~---~-~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~   78 (231)
T d1vl5a_           4 LAKLMQIAALKGNEEVLDVATGGGHVAN-AFAPF---V-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT   78 (231)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHHH-HHGGG---S-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC
T ss_pred             HHHHHHhcCCCCcCEEEEecccCcHHHH-HHHHh---C-CEEEEEECCHHHHhhhhhccccccccccccccccccccccc
Confidence            4567777888999999999999999994 44433   2 48999999999999999886   457899999999987766


Q ss_pred             ccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      .   ++||+|++..++||++|+..++++++++|||||++++.+..
T Consensus        79 ~---~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~  120 (231)
T d1vl5a_          79 D---ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS  120 (231)
T ss_dssp             T---TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             c---cccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            5   89999999999999999999999999999999999987643

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.81  E-value=9.7e-20  Score=168.04  Aligned_cols=115  Identities=22%  Similarity=0.358  Sum_probs=100.1

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcc
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNL   97 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l   97 (433)
                      .++.+++.+.++|+.||||||||+|.++ ..+++.   + .+|+|+|+|+.|++.|+++.   ...++.+.++|+++.++
T Consensus         4 ~~~~l~~~~~~~~~~rILDiGcGtG~~~-~~la~~---~-~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~   78 (234)
T d1xxla_           4 SLGLMIKTAECRAEHRVLDIGAGAGHTA-LAFSPY---V-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF   78 (234)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTSHHH-HHHGGG---S-SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCcCcHHH-HHHHHh---C-CeEEEEeCChhhhhhhhhhhcccccccccccccccccccc
Confidence            4555778888899999999999999999 455543   2 48999999999999999887   45789999999998776


Q ss_pred             cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      ++   ++||+|+|..++||++|+..+++++.++|||||.+++.+..
T Consensus        79 ~~---~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~  121 (234)
T d1xxla_          79 PD---DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY  121 (234)
T ss_dssp             CT---TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cc---cccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcC
Confidence            65   89999999999999999999999999999999999987543

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=5.1e-18  Score=153.26  Aligned_cols=100  Identities=17%  Similarity=0.309  Sum_probs=87.8

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSF  111 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~  111 (433)
                      .++.+|||||||+|.++ ..++        +++|+|+|+.|++.|+++    ++.+.++|+++.++++   ++||+|++.
T Consensus        35 ~~~~~vLDiGcG~G~~~-~~~~--------~~~giD~s~~~~~~a~~~----~~~~~~~d~~~l~~~~---~~fD~I~~~   98 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFA-VPLK--------IKIGVEPSERMAEIARKR----GVFVLKGTAENLPLKD---ESFDFALMV   98 (208)
T ss_dssp             CCSSCEEEETCTTSTTH-HHHT--------CCEEEESCHHHHHHHHHT----TCEEEECBTTBCCSCT---TCEEEEEEE
T ss_pred             CCCCeEEEECCCCcccc-cccc--------eEEEEeCChhhccccccc----cccccccccccccccc---ccccccccc
Confidence            45678999999999998 4443        468999999999999986    6899999999877655   899999999


Q ss_pred             ccccchhhHHHHHHHHHHhccCCCEEEEEeccCCch
Q psy11646        112 YCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPI  147 (433)
Q Consensus       112 ~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~  147 (433)
                      .++||++++..++++++++|+|||.+++..+...+.
T Consensus        99 ~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~  134 (208)
T d1vlma_          99 TTICFVDDPERALKEAYRILKKGGYLIVGIVDRESF  134 (208)
T ss_dssp             SCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSH
T ss_pred             cccccccccccchhhhhhcCCCCceEEEEecCCcch
Confidence            999999999999999999999999999988766553

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=2.3e-18  Score=159.82  Aligned_cols=117  Identities=16%  Similarity=0.202  Sum_probs=99.6

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccC
Q psy11646         19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIAD   94 (433)
Q Consensus        19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~   94 (433)
                      ...+..+.+.+.+.||.+|||||||+|..+.. +++..+   .+++|+|+|+.|++.|+++.    ...+++|.++|+++
T Consensus        19 ~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~-la~~~~---~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~   94 (245)
T d1nkva_          19 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCT-WARDHG---ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG   94 (245)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHH-HHHHTC---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHH-HHHhcC---CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhh
Confidence            45567788888899999999999999999844 444322   48999999999999999986    23579999999988


Q ss_pred             CcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         95 QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        95 ~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      . .++   ++||+|++..+++|+.|+..++++++++|||||++++..+.
T Consensus        95 ~-~~~---~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~  139 (245)
T d1nkva_          95 Y-VAN---EKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY  139 (245)
T ss_dssp             C-CCS---SCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             c-ccc---CceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEecc
Confidence            6 333   89999999999999999999999999999999999997643

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=5.1e-18  Score=154.49  Aligned_cols=113  Identities=22%  Similarity=0.479  Sum_probs=92.6

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccc
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLES   99 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~   99 (433)
                      +..++.+. .+++.+|||||||+|..+. .+++   .+ .+++|+|+|+.|++.|+++.  ....+.++.+|+++.+++.
T Consensus        27 ~~~~~~~~-l~~~~~ILDiGcG~G~~~~-~la~---~~-~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~  100 (226)
T d1ve3a1          27 LEPLLMKY-MKKRGKVLDLACGVGGFSF-LLED---YG-FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFED  100 (226)
T ss_dssp             HHHHHHHS-CCSCCEEEEETCTTSHHHH-HHHH---TT-CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCT
T ss_pred             HHHHHHHh-cCCCCEEEEECCCcchhhh-hHhh---hh-cccccccccccchhhhhhhhccccccccccccccccccccC
Confidence            44455442 2577899999999999994 4543   23 59999999999999999887  4467888999999877665


Q ss_pred             cccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEecc
Q psy11646        100 IFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                         ++||+|++..+++|++  ++..+++++.++|||||.+++....
T Consensus       101 ---~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         101 ---KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             ---TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ---cCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence               8999999999999985  6778999999999999999887643

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.75  E-value=3.2e-18  Score=162.31  Aligned_cols=121  Identities=16%  Similarity=0.192  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEec
Q psy11646         16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVAN   91 (433)
Q Consensus        16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~D   91 (433)
                      +..+.++..+.....++++.+|||||||+|..+. .+++..  + .+|+|+|+|+.|++.|+++.    ...++++.++|
T Consensus        50 ~~~~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~-~la~~~--~-~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d  125 (282)
T d2o57a1          50 RTDEWLASELAMTGVLQRQAKGLDLGAGYGGAAR-FLVRKF--G-VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGS  125 (282)
T ss_dssp             HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHH-HHHHHH--C-CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECC
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHh-hhhccC--C-cEEEEEeccchhhhhhhcccccccccccccccccc
Confidence            3445566666666678899999999999999984 444332  2 48999999999999999886    23689999999


Q ss_pred             ccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         92 IADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        92 i~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      +.+.++++   ++||+|++..+++|++++..++++++++|||||++++..+.
T Consensus       126 ~~~l~~~~---~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~  174 (282)
T d2o57a1         126 FLEIPCED---NSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPM  174 (282)
T ss_dssp             TTSCSSCT---TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cccccccc---cccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEee
Confidence            99887665   89999999999999999999999999999999999987643

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=1.4e-17  Score=153.60  Aligned_cols=115  Identities=23%  Similarity=0.423  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc
Q psy11646         17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN   96 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~   96 (433)
                      ...+.+..++.... +++.+|||+|||+|.++. .++.   .+ .+|+|+|+|+.|++.|+++.   ...++.+|+++.+
T Consensus        27 ~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~-~l~~---~~-~~v~giD~s~~~l~~a~~~~---~~~~~~~~~~~l~   97 (246)
T d2avna1          27 LYHRLIGSFLEEYL-KNPCRVLDLGGGTGKWSL-FLQE---RG-FEVVLVDPSKEMLEVAREKG---VKNVVEAKAEDLP   97 (246)
T ss_dssp             HHHHHHHHHHHHHC-CSCCEEEEETCTTCHHHH-HHHT---TT-CEEEEEESCHHHHHHHHHHT---CSCEEECCTTSCC
T ss_pred             HHHHHHHHHHHHhc-CCCCEEEEECCCCchhcc-cccc---cc-eEEEEeeccccccccccccc---ccccccccccccc
Confidence            34455555554443 467899999999999994 5553   23 59999999999999999985   2246788998876


Q ss_pred             ccccccCcEeEEEEc-ccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         97 LESIFLAKFNKIFSF-YCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        97 l~~~~~~~fD~Vis~-~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      +++   ++||+|++. .++||++|+..+++++.++|||||.+++.++.
T Consensus        98 ~~~---~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~  142 (246)
T d2avna1          98 FPS---GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN  142 (246)
T ss_dssp             SCT---TCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             ccc---ccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECC
Confidence            654   899999985 58999999999999999999999999988753

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.7e-17  Score=151.57  Aligned_cols=106  Identities=22%  Similarity=0.357  Sum_probs=88.3

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeE
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      ..++.+|||||||+|..+..++.+    .+.+|+|+|+|+.|++.|++++   ...+++|.++|+++.+++.   ++||+
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~----~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~---~~fD~  130 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLP----LFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEP---DSYDV  130 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTT----TCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCS---SCEEE
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHh----cCCEEEEeecCHHHhhcccccccccccccccccccccccccccc---ccccc
Confidence            346789999999999998444442    2358999999999999999987   2356899999998876544   89999


Q ss_pred             EEEcccccchhhH--HHHHHHHHHhccCCCEEEEEecc
Q psy11646        108 IFSFYCLHWVQDQ--RQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       108 Vis~~~l~~~~d~--~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      |++..++||+++.  ..++++++++|+|||.+++.+..
T Consensus       131 I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~  168 (222)
T d2ex4a1         131 IWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM  168 (222)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcc
Confidence            9999999999764  57999999999999999987643

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.72  E-value=4.6e-17  Score=150.93  Aligned_cols=131  Identities=23%  Similarity=0.415  Sum_probs=100.5

Q ss_pred             chhhhhhhhhhc---HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhh
Q psy11646          3 KATLYETNNSMQ---QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH   79 (433)
Q Consensus         3 ~a~~Y~~~~~~~---~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~   79 (433)
                      -|+.|+......   .......+..++.....+++.+|||||||+|..+.. +++   .+ .+|+|+|+|+.|++.|+++
T Consensus         8 ~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~-l~~---~~-~~v~gvD~s~~mi~~a~~~   82 (251)
T d1wzna1           8 LAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLE-LAE---RG-YEVVGLDLHEEMLRVARRK   82 (251)
T ss_dssp             TGGGHHHHTHHHHHTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHH-HHH---TT-CEEEEEESCHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchh-hcc---cc-eEEEEEeeccccccccccc
Confidence            356666632111   122344566777777777888999999999999944 443   23 5899999999999999998


Q ss_pred             c--CCCCeEEEEecccCCcccccccCcEeEEEEc-ccccch--hhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         80 H--TNPKLEFVVANIADQNLESIFLAKFNKIFSF-YCLHWV--QDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        80 ~--~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~-~~l~~~--~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      .  ...++++.++|+++.+++    ++||+|++. .+++|+  ++...++++++++|||||.+++...
T Consensus        83 ~~~~~~~i~~~~~d~~~l~~~----~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~  146 (251)
T d1wzna1          83 AKERNLKIEFLQGDVLEIAFK----NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP  146 (251)
T ss_dssp             HHHTTCCCEEEESCGGGCCCC----SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccccchheehhhhhcccc----cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            7  345799999999987654    689999996 466665  5677899999999999999998754

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.71  E-value=2.9e-17  Score=155.61  Aligned_cols=117  Identities=20%  Similarity=0.389  Sum_probs=97.2

Q ss_pred             HHHHHHHHhc-CCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCc
Q psy11646         20 KLLSQYIDQF-KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQN   96 (433)
Q Consensus        20 ~ll~~l~~~l-~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~   96 (433)
                      .+++.++..+ ...++.+|||||||+|.++ ..++...+.+ .+|+|+|+|+.|++.|+++.  ...+++|.+.|+...+
T Consensus        13 d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~-~~la~~~~~~-~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~   90 (281)
T d2gh1a1          13 DYVSFLVNTVWKITKPVHIVDYGCGYGYLG-LVLMPLLPEG-SKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE   90 (281)
T ss_dssp             HHHHHHHHTTSCCCSCCEEEEETCTTTHHH-HHHTTTSCTT-CEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCC
T ss_pred             HHHHHHHHHHhccCCcCEEEEecCcCCHHH-HHHHHhCCCC-CEEEEEecchhHhhhhhccccccccccccccccccccc
Confidence            3455555544 3456789999999999999 5666666654 58999999999999999987  3347899999998765


Q ss_pred             ccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         97 LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        97 l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ++    ++||+|++..++||++++..++++++++|||||.+++.++
T Consensus        91 ~~----~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1          91 LN----DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             CS----SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cc----CCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence            43    6899999999999999999999999999999999998764

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.68  E-value=9e-17  Score=146.99  Aligned_cols=117  Identities=22%  Similarity=0.422  Sum_probs=89.7

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCC
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQ   95 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~   95 (433)
                      +.+..++... .+++.+|||||||+|..+..++ +.....+.+|+|+|+|+.|++.|+++.    ...++++...|+.+.
T Consensus        27 ~~i~~~~~~~-~~~~~~vLDlGCGtG~~~~~l~-~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~  104 (225)
T d1im8a_          27 TAIGMLAERF-VTADSNVYDLGCSRGAATLSAR-RNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV  104 (225)
T ss_dssp             HHHHHHHHHH-CCTTCEEEEESCTTCHHHHHHH-HTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC
T ss_pred             HHHHHHHHHh-cCCCCEEEEeccchhhHHHHHH-HhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc
Confidence            3444444433 3678899999999999994444 433323369999999999999999976    234566777776553


Q ss_pred             cccccccCcEeEEEEcccccch--hhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         96 NLESIFLAKFNKIFSFYCLHWV--QDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        96 ~l~~~~~~~fD~Vis~~~l~~~--~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      +  .   +.+|+|+++.++||+  +++..++++++++|||||.+++.+..
T Consensus       105 ~--~---~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~  149 (225)
T d1im8a_         105 E--I---KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF  149 (225)
T ss_dssp             C--C---CSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             c--c---ccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccc
Confidence            2  2   679999999999998  47889999999999999999997644

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.68  E-value=1.2e-16  Score=149.04  Aligned_cols=116  Identities=20%  Similarity=0.288  Sum_probs=97.0

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcccc
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLES   99 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~   99 (433)
                      ....+++.+...++.+|||+|||+|.++..++.+.    +.+|+++|+|+.|++.|+++. ...++++.+.|+++.++++
T Consensus        81 ~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~----~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~  156 (254)
T d1xtpa_          81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL----YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPP  156 (254)
T ss_dssp             HHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH----CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCS
T ss_pred             HHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhc----CceEEEEcCCHHHHHhhhccccccccceeEEccccccccCC
Confidence            44566777776778899999999999996666532    248999999999999999988 4466899999998876554


Q ss_pred             cccCcEeEEEEcccccchhhH--HHHHHHHHHhccCCCEEEEEecc
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQ--RQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~--~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                         ++||+|++..++||+++.  ..++++++++|+|||.+++.+..
T Consensus       157 ---~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~  199 (254)
T d1xtpa_         157 ---NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC  199 (254)
T ss_dssp             ---SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             ---CccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecC
Confidence               899999999999999764  57899999999999999987643

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.67  E-value=2e-16  Score=144.78  Aligned_cols=113  Identities=18%  Similarity=0.322  Sum_probs=92.9

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccc
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIF  101 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~  101 (433)
                      +..+...   .++.+|||||||+|.++ ..+++   .+ .+|+|+|+|+.+++.|+++.. .++.+.++|+++.+++   
T Consensus        12 ~~~~~~~---~~~~~VLDiGcG~G~~~-~~l~~---~g-~~v~giD~s~~~i~~a~~~~~-~~~~~~~~~~~~~~~~---   79 (225)
T d2p7ia1          12 VRAFTPF---FRPGNLLELGSFKGDFT-SRLQE---HF-NDITCVEASEEAISHAQGRLK-DGITYIHSRFEDAQLP---   79 (225)
T ss_dssp             HHHHGGG---CCSSCEEEESCTTSHHH-HHHTT---TC-SCEEEEESCHHHHHHHHHHSC-SCEEEEESCGGGCCCS---
T ss_pred             HHHhhhh---CCCCcEEEEeCCCcHHH-HHHHH---cC-CeEEEEeCcHHHhhhhhcccc-cccccccccccccccc---
Confidence            3444444   34678999999999999 55553   23 589999999999999999863 4799999998876443   


Q ss_pred             cCcEeEEEEcccccchhhHHHHHHHHH-HhccCCCEEEEEeccCCch
Q psy11646        102 LAKFNKIFSFYCLHWVQDQRQAISNIY-NLLMPGGEVLLLLNAFNPI  147 (433)
Q Consensus       102 ~~~fD~Vis~~~l~~~~d~~~~l~~i~-~~LkpGG~lll~~~~~~p~  147 (433)
                       ++||+|++..++||++|+..++.+++ ++|+|||.+++..+.....
T Consensus        80 -~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~  125 (225)
T d2p7ia1          80 -RRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAV  125 (225)
T ss_dssp             -SCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCH
T ss_pred             -cccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCCcccH
Confidence             78999999999999999999999998 7999999999988765543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.67  E-value=1.9e-16  Score=147.45  Aligned_cols=110  Identities=25%  Similarity=0.385  Sum_probs=88.1

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      +++.+|||||||+|..+..++. .   +..+|+|+|+|+.|++.|++++    ...++.+.++|+...++.  ..++||+
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~-~---~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~--~~~~fD~   96 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYER-A---GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD--LGKEFDV   96 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHH-H---TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC--CSSCEEE
T ss_pred             CCcCEEEEecccCcHHHHHHHH-c---CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc--ccccceE
Confidence            6789999999999998855543 2   2248999999999999999887    224688999998765432  2378999


Q ss_pred             EEEcccccch----hhHHHHHHHHHHhccCCCEEEEEeccCCch
Q psy11646        108 IFSFYCLHWV----QDQRQAISNIYNLLMPGGEVLLLLNAFNPI  147 (433)
Q Consensus       108 Vis~~~l~~~----~d~~~~l~~i~~~LkpGG~lll~~~~~~p~  147 (433)
                      |+|..++||+    ++...+++++.++|||||+++++.+....+
T Consensus        97 V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i  140 (252)
T d1ri5a_          97 ISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVI  140 (252)
T ss_dssp             EEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHH
T ss_pred             EEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHH
Confidence            9999999997    345689999999999999999887654443

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=4.8e-16  Score=146.89  Aligned_cols=125  Identities=15%  Similarity=0.255  Sum_probs=99.7

Q ss_pred             hhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCe
Q psy11646         10 NNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKL   85 (433)
Q Consensus        10 ~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i   85 (433)
                      .......+..+.++.+++++.++||.+|||||||+|.++. .+++..  + .+|+|+|+|+.+++.|+++.    ...++
T Consensus        29 ~~~tL~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~-~~a~~~--g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~  104 (280)
T d2fk8a1          29 PELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMR-RAVERF--D-VNVIGLTLSKNQHARCEQVLASIDTNRSR  104 (280)
T ss_dssp             TTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHH-HHHHHH--C-CEEEEEESCHHHHHHHHHHHHTSCCSSCE
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHH-HHHHhC--c-eeEEEecchHHHHHHHHHHHHhhccccch
Confidence            3334445667789999999999999999999999999984 444332  2 49999999999999999987    22456


Q ss_pred             EEEEecccCCcccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646         86 EFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        86 ~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      .+...|....      +++||.|++..+++|+.  +...++++++++|||||++++.....
T Consensus       105 ~~~~~d~~~~------~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~  159 (280)
T d2fk8a1         105 QVLLQGWEDF------AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS  159 (280)
T ss_dssp             EEEESCGGGC------CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred             hhhhhhhhhh------ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeec
Confidence            6666665432      27899999999999995  45899999999999999999976443

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.65  E-value=4e-16  Score=144.43  Aligned_cols=112  Identities=23%  Similarity=0.380  Sum_probs=87.1

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCccc
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLE   98 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~   98 (433)
                      .+.+++.... .++.+|||||||+|.++. .+++.   + .+++|+|+|+.|++.|+++.  ...++++.++|+...+++
T Consensus        26 ~~~~~~~~~~-~~~~~vLDiGCG~G~~~~-~l~~~---g-~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~   99 (246)
T d1y8ca_          26 FIIEKCVENN-LVFDDYLDLACGTGNLTE-NLCPK---F-KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN   99 (246)
T ss_dssp             HHHHHHHTTT-CCTTEEEEETCTTSTTHH-HHGGG---S-SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS
T ss_pred             HHHHHHHHhC-CCCCeEEEEeCcCCHHHH-HHHHh---C-CccEeeccchhhhhhccccccccCccceeeccchhhhccc
Confidence            3444444432 346799999999999994 44432   3 58999999999999999987  345799999999876543


Q ss_pred             ccccCcEeEEEEc-ccccch---hhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         99 SIFLAKFNKIFSF-YCLHWV---QDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        99 ~~~~~~fD~Vis~-~~l~~~---~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                          ++||+|+|. .+++|+   +++..++++++++|+|||.+++...
T Consensus       100 ----~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  143 (246)
T d1y8ca_         100 ----RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             ----CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             ----ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence                789999985 566665   4677899999999999999988654

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=99.64  E-value=5.6e-16  Score=140.54  Aligned_cols=88  Identities=19%  Similarity=0.184  Sum_probs=78.4

Q ss_pred             CCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEee--cCCHHHHHHHHhcccceeEEecCCC
Q psy11646        199 DEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFR--SRNVVCLETKFQIFFENVSIAKPKS  276 (433)
Q Consensus       199 ~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~--g~~~~~~~~~l~~~F~~v~~~KP~~  276 (433)
                      ...+|+|+||++|+ +|...+|+.++.++    +++|..+|++||.||+|+|.  ++++...+..++..|..+.+.+| +
T Consensus       130 ~~~~D~vlcDm~es-s~~~~vd~~Rtl~v----Lela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~~fgg~lVR~P-~  203 (257)
T d2p41a1         130 PERCDTLLCDIGES-SPNPTVEAGRTLRV----LNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHGGALVRNP-L  203 (257)
T ss_dssp             CCCCSEEEECCCCC-CSSHHHHHHHHHHH----HHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHHCCEEECCT-T
T ss_pred             CCcCCEEEeeCCCC-CCCchhhhhhHHHH----HHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHHHhCCeeEcCC-C
Confidence            45799999999998 99999999998765    67778899999999999999  55577888999999999999999 9


Q ss_pred             CcccccceeEEEeecc
Q psy11646        277 SRNSSIESFIVCQNYR  292 (433)
Q Consensus       277 sr~~s~E~~~v~~~~~  292 (433)
                      ||++|.|.|+||....
T Consensus       204 SRnst~EmY~Vs~~~~  219 (257)
T d2p41a1         204 SRNSTHEMYWVSNASG  219 (257)
T ss_dssp             SCTTCCCEEEETTCCC
T ss_pred             CccccceeEEeecccc
Confidence            9999999999986643

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1.7e-15  Score=142.30  Aligned_cols=118  Identities=25%  Similarity=0.425  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcc
Q psy11646         18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL   97 (433)
Q Consensus        18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l   97 (433)
                      ...++..+...+ ..++.+|||||||+|.++ ..++...+.  .+++|+|+|+.|++.|+++.  +++.+.++|+.+.++
T Consensus        70 ~~~~~~~l~~~~-~~~~~~iLDiGcG~G~~~-~~l~~~~~~--~~~~giD~s~~~~~~a~~~~--~~~~~~~~d~~~l~~  143 (268)
T d1p91a_          70 RDAIVAQLRERL-DDKATAVLDIGCGEGYYT-HAFADALPE--ITTFGLDVSKVAIKAAAKRY--PQVTFCVASSHRLPF  143 (268)
T ss_dssp             HHHHHHHHHHHS-CTTCCEEEEETCTTSTTH-HHHHHTCTT--SEEEEEESCHHHHHHHHHHC--TTSEEEECCTTSCSB
T ss_pred             HHHHHHHHHHhc-CCCCCEEEEeCCCCcHHH-HHHHHHCCC--CEEEEecchHhhhhhhhccc--ccccceeeehhhccC
Confidence            344444444444 346789999999999999 555555554  49999999999999999986  689999999999877


Q ss_pred             cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHH
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLY  151 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~  151 (433)
                      ++   ++||+|++..+++++       +++.|+|||||.+++..++.....+..
T Consensus       144 ~~---~sfD~v~~~~~~~~~-------~e~~rvLkpgG~l~~~~p~~~~l~el~  187 (268)
T d1p91a_         144 SD---TSMDAIIRIYAPCKA-------EELARVVKPGGWVITATPGPRHLMELK  187 (268)
T ss_dssp             CT---TCEEEEEEESCCCCH-------HHHHHHEEEEEEEEEEEECTTTTHHHH
T ss_pred             CC---CCEEEEeecCCHHHH-------HHHHHHhCCCcEEEEEeeCCcchHHHH
Confidence            65   899999999998874       578999999999999988776655544

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.64  E-value=7.4e-16  Score=145.69  Aligned_cols=128  Identities=20%  Similarity=0.251  Sum_probs=105.9

Q ss_pred             hhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----C
Q psy11646          6 LYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----T   81 (433)
Q Consensus         6 ~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~   81 (433)
                      .|.........+..+.++.+++++.++||.+|||||||.|..+..+++ ..  + .+|+|+++|+.+++.|+++.    .
T Consensus        35 ~~~~~~~tL~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~-~~--g-~~v~git~s~~Q~~~a~~~~~~~g~  110 (285)
T d1kpga_          35 YFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVE-KY--D-VNVVGLTLSKNQANHVQQLVANSEN  110 (285)
T ss_dssp             CCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHH-HH--C-CEEEEEESCHHHHHHHHHHHHTCCC
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHh-cC--C-cceEEEeccHHHHHHHHHHHHhhhh
Confidence            344444455667888999999999999999999999999999954444 32  2 59999999999999999986    3


Q ss_pred             CCCeEEEEecccCCcccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         82 NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        82 ~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      ..++++...|....+      ++||.|++..+++|+.  +...+++++.++|||||++++...+
T Consensus       111 ~~~v~~~~~d~~~~~------~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         111 LRSKRVLLAGWEQFD------EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             CSCEEEEESCGGGCC------CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             hhhhHHHHhhhhccc------ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence            468889988876532      7899999999999994  5688999999999999999997655

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.64  E-value=8.5e-16  Score=145.69  Aligned_cols=128  Identities=20%  Similarity=0.294  Sum_probs=103.0

Q ss_pred             hhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CC
Q psy11646          7 YETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TN   82 (433)
Q Consensus         7 Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~   82 (433)
                      |.........+..+.++.+++++.+++|.+|||||||.|..+..++. ..+   .+++|+++|+++++.|+++.    ..
T Consensus        35 ~~~~~~tL~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~-~~g---~~v~git~s~~q~~~a~~~~~~~~l~  110 (291)
T d1kpia_          35 FERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVA-EYD---VNVIGLTLSENQYAHDKAMFDEVDSP  110 (291)
T ss_dssp             CSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHH-HHC---CEEEEEESCHHHHHHHHHHHHHSCCS
T ss_pred             ecCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHH-hcC---cceeeccchHHHHHHHHHHHHhhccc
Confidence            43344455567778899999999999999999999999999844444 322   49999999999999999887    23


Q ss_pred             CCeEEEEecccCCcccccccCcEeEEEEcccccchhh---------HHHHHHHHHHhccCCCEEEEEeccC
Q psy11646         83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQD---------QRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        83 ~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d---------~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      .++.+...|...   .   +++||.|+|..+++|+.+         .+..++++.++|||||++++...+.
T Consensus       111 ~~v~~~~~d~~~---~---~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~  175 (291)
T d1kpia_         111 RRKEVRIQGWEE---F---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI  175 (291)
T ss_dssp             SCEEEEECCGGG---C---CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEEC
T ss_pred             hhhhhhhhcccc---c---ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEec
Confidence            567777776532   2   388999999999999864         5789999999999999999987654

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.64  E-value=5e-16  Score=137.89  Aligned_cols=115  Identities=14%  Similarity=0.176  Sum_probs=91.9

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC---------------CCCeE
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT---------------NPKLE   86 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~---------------~~~i~   86 (433)
                      +.++...+..+|+.||||+|||+|..+ ..|+.   .+ .+|+|+|+|+.|++.|+++..               ...+.
T Consensus         9 ~~~~~~~l~~~~~~rvLd~GCG~G~~a-~~la~---~G-~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T d1pjza_           9 LQQYWSSLNVVPGARVLVPLCGKSQDM-SWLSG---QG-YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE   83 (201)
T ss_dssp             HHHHHHHHCCCTTCEEEETTTCCSHHH-HHHHH---HC-CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred             HHHHHHHcCCCCCCEEEEecCcCCHHH-HHHHH---cC-CceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccc
Confidence            445677777889999999999999999 45553   23 699999999999999999862               23456


Q ss_pred             EEEecccCCcccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         87 FVVANIADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        87 ~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      +.++|+...+  ......||+|++..+++++.  +....++++.++|||||.+++....
T Consensus        84 ~~~~d~~~l~--~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~  140 (201)
T d1pjza_          84 IWCGDFFALT--ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLE  140 (201)
T ss_dssp             EEEECCSSST--HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred             eecccccccc--cccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcc
Confidence            7888876643  22347899999999999985  4678999999999999998876543

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.63  E-value=9.8e-16  Score=137.19  Aligned_cols=103  Identities=17%  Similarity=0.333  Sum_probs=85.6

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKI  108 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~V  108 (433)
                      .++.+|||||||+|..+. .+++   .+ .+|+|+|+|+.|++.|+++.   +..++++...|+.....+    ++||+|
T Consensus        29 ~~~grvLDiGcG~G~~~~-~la~---~g-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~----~~fD~I   99 (198)
T d2i6ga1          29 VAPGRTLDLGCGNGRNSL-YLAA---NG-YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFD----GEYDFI   99 (198)
T ss_dssp             SCSCEEEEETCTTSHHHH-HHHH---TT-CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCC----CCEEEE
T ss_pred             CCCCcEEEECCCCCHHHH-HHHH---Hh-hhhccccCcHHHHHHHHHHhhhccccchhhhheeccccccc----ccccEE
Confidence            345699999999999994 4443   23 69999999999999998877   346789999998876543    789999


Q ss_pred             EEcccccchh--hHHHHHHHHHHhccCCCEEEEEecc
Q psy11646        109 FSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       109 is~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      ++..++||++  +..++++++.++|+|||.+++....
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1         100 LSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             EEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             EEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            9999999985  4568999999999999999987543

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.62  E-value=1.4e-15  Score=135.10  Aligned_cols=140  Identities=17%  Similarity=0.242  Sum_probs=102.5

Q ss_pred             hhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-
Q psy11646          6 LYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-   81 (433)
Q Consensus         6 ~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-   81 (433)
                      .|.+......+-..++-..++..+...++.+|||+|||+|.++..+ +..    +.+|+|+|+++.+++.|++++   + 
T Consensus         6 ~f~~~~~~~~~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~l-A~~----~~~V~avD~~~~~l~~a~~n~~~~gl   80 (186)
T d1l3ia_           6 EFIKNPSVPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLEL-AGR----VRRVYAIDRNPEAISTTEMNLQRHGL   80 (186)
T ss_dssp             GSCCCTTSCCCCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHH-HTT----SSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             hhccCCCCCCCChHHHHHHHHHhcCCCCCCEEEEEECCeEcccccc-ccc----ceEEEEecCCHHHHHHHHHHHHHcCC
Confidence            3443333332333455556677788889999999999999999554 422    259999999999999999987   2 


Q ss_pred             CCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhc
Q psy11646         82 NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSR  156 (433)
Q Consensus        82 ~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~  156 (433)
                      ..+++++++|+.+....   ...||.|++....++.   ...++.+.+.|||||++++.....+........+..
T Consensus        81 ~~~v~~~~gda~~~~~~---~~~~D~v~~~~~~~~~---~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~  149 (186)
T d1l3ia_          81 GDNVTLMEGDAPEALCK---IPDIDIAVVGGSGGEL---QEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRD  149 (186)
T ss_dssp             CTTEEEEESCHHHHHTT---SCCEEEEEESCCTTCH---HHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHH
T ss_pred             CcceEEEECchhhcccc---cCCcCEEEEeCccccc---hHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHH
Confidence            36899999998765333   3789999998877654   568999999999999998876555444444444433

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.6e-16  Score=146.91  Aligned_cols=130  Identities=18%  Similarity=0.227  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHhcCC-CCCCEEEEECCCCChhHHHHhcc---cCCCCCcEEEEEeCCHHHHHHHHhhc-CC---CCeEE-
Q psy11646         17 DAAKLLSQYIDQFKW-TDNESVLDVGCGPGNVTSKLLLP---NLPKSVVKLVGLDVSPNMIKHAKNHH-TN---PKLEF-   87 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~---~~~~~~~~v~gvDiS~~~l~~A~~~~-~~---~~i~~-   87 (433)
                      ...+.+..++..+.. ++..+|||||||+|.++..++..   ..+....+++|+|+|+.|++.|+++. ..   .++.+ 
T Consensus        23 ~~~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~  102 (280)
T d1jqea_          23 FMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFA  102 (280)
T ss_dssp             HHHHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEE
T ss_pred             HHHHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcccccccccc
Confidence            444445555555543 35568999999999988555432   23333357899999999999999986 22   33333 


Q ss_pred             -EEecccCCc---ccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646         88 -VVANIADQN---LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus        88 -~~~Di~~~~---l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                       ...+++...   ......++||+|++.+++||++|+..++++++++|+|||.++++.....+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~  165 (280)
T d1jqea_         103 WHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS  165 (280)
T ss_dssp             EECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTS
T ss_pred             chhhhhhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcc
Confidence             333332110   11123489999999999999999999999999999999999988765443

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.59  E-value=1.6e-15  Score=141.34  Aligned_cols=131  Identities=21%  Similarity=0.371  Sum_probs=106.9

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc------CCCCeEEEEecccCC
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH------TNPKLEFVVANIADQ   95 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~------~~~~i~~~~~Di~~~   95 (433)
                      +..++..+..+||.+|||+|||+|.++..++....+.+  +|+++|+++++++.|++++      ...++.+.+.|+.+.
T Consensus        85 ~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G--~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~  162 (264)
T d1i9ga_          85 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAG--QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS  162 (264)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTS--EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred             HHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCc--EEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc
Confidence            34567777889999999999999999955555445655  9999999999999999876      246899999999876


Q ss_pred             cccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccc
Q psy11646         96 NLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTE  162 (433)
Q Consensus        96 ~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~  162 (433)
                      ++++   ++||.|++     +++++..++.++.++|||||.+++..++..........+...+.|..
T Consensus       163 ~~~~---~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~~  221 (264)
T d1i9ga_         163 ELPD---GSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTE  221 (264)
T ss_dssp             CCCT---TCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCC
T ss_pred             cccC---CCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCeec
Confidence            6655   89999986     57788899999999999999999988877777777777654455654

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.58  E-value=3.5e-15  Score=136.78  Aligned_cols=111  Identities=9%  Similarity=0.118  Sum_probs=92.5

Q ss_pred             HHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcccccccCc
Q psy11646         26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLESIFLAK  104 (433)
Q Consensus        26 ~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~~~~~~  104 (433)
                      ++.+..+||.+|||+|||+|..+ ..++...+.+  .|+|+|+|+.|++.|+++. ..+++..+..|.....  ...+..
T Consensus        67 l~~l~ikpG~~VLDlGcGsG~~~-~~la~~~~~g--~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~--~~~~~~  141 (230)
T d1g8sa_          67 LKVMPIKRDSKILYLGASAGTTP-SHVADIADKG--IVYAIEYAPRIMRELLDACAERENIIPILGDANKPQ--EYANIV  141 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCSSHHH-HHHHHHTTTS--EEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGG--GGTTTC
T ss_pred             HHhCCCCCCCEEEEeCEEcCHHH-HHHHHhCCCC--EEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCc--cccccc
Confidence            45667889999999999999999 5555666665  9999999999999999988 5578888888876542  223467


Q ss_pred             EeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        105 FNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       105 fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +|+++++..+++.++...++.++++.|||||.+++..
T Consensus       142 ~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~  178 (230)
T d1g8sa_         142 EKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEe
Confidence            7888888889999999999999999999999998875

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.58  E-value=2.7e-15  Score=135.63  Aligned_cols=110  Identities=15%  Similarity=0.163  Sum_probs=88.4

Q ss_pred             HhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcccccccCcE
Q psy11646         27 DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLESIFLAKF  105 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~~~~~~f  105 (433)
                      ..+..+||.+|||+|||+|..+ ..++...+.+  +|+|+|+|+.|++.|+++. ...++.++..|+............+
T Consensus        50 ~~l~lkpg~~VLDlGcG~G~~~-~~la~~v~~g--~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v  126 (209)
T d1nt2a_          50 HRLKLRGDERVLYLGAASGTTV-SHLADIVDEG--IIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKV  126 (209)
T ss_dssp             CCCCCCSSCEEEEETCTTSHHH-HHHHHHTTTS--EEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCE
T ss_pred             ccCCCCCCCEEEEeCCcCCHHH-HHHHHhccCC--eEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceE
Confidence            3567789999999999999988 6667777765  9999999999999999887 4578999999988754443223445


Q ss_pred             eEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        106 NKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       106 D~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |+|+.  .+++..+...+++++.++|||||.+++..
T Consensus       127 d~v~~--~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         127 DLIYQ--DIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEe--cccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            55543  46666778899999999999999999875

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.1e-14  Score=133.46  Aligned_cols=115  Identities=17%  Similarity=0.198  Sum_probs=90.9

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC--------------------C
Q psy11646         23 SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT--------------------N   82 (433)
Q Consensus        23 ~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~--------------------~   82 (433)
                      +.+.+.+..+++.+|||+|||+|..+ ..++.   .| .+|+|+|+|+.+++.|+++..                    .
T Consensus        35 ~~~~~~l~~~~~~rvLd~GCG~G~~a-~~LA~---~G-~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (229)
T d2bzga1          35 KHLDTFLKGKSGLRVFFPLCGKAVEM-KWFAD---RG-HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSS  109 (229)
T ss_dssp             HHHHHHHTTCCSCEEEETTCTTCTHH-HHHHH---TT-CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETT
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCcHHH-HHHHh---CC-CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecC
Confidence            33445556678999999999999999 45553   34 699999999999999988651                    2


Q ss_pred             CCeEEEEecccCCcccccccCcEeEEEEcccccch--hhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646         83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWV--QDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus        83 ~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~--~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      .++++.++|+...+  ....+.||+|+...++|++  ++....++++.++|||||++++.....
T Consensus       110 ~~v~~~~~d~~~l~--~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~  171 (229)
T d2bzga1         110 GNISLYCCSIFDLP--RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSY  171 (229)
T ss_dssp             SSEEEEESCGGGGG--GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEEC
T ss_pred             CcEEEEEcchhhcc--ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEccc
Confidence            46888999987642  2334789999999999988  457789999999999999988876543

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.55  E-value=2.7e-14  Score=127.33  Aligned_cols=109  Identities=21%  Similarity=0.358  Sum_probs=88.4

Q ss_pred             HHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-----CCCCeEEEEecccCCcccc
Q psy11646         25 YIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-----TNPKLEFVVANIADQNLES   99 (433)
Q Consensus        25 l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-----~~~~i~~~~~Di~~~~l~~   99 (433)
                      +++.+...++.+|||+|||+|.++. .++...    .+++++|+|+.+++.|++++     ...++++..+|+.+. +++
T Consensus        44 Li~~l~~~~~~~VLDiGcG~G~~~~-~la~~~----~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~-~~~  117 (194)
T d1dusa_          44 LVENVVVDKDDDILDLGCGYGVIGI-ALADEV----KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN-VKD  117 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCTTSHHHH-HHGGGS----SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-CTT
T ss_pred             HHHhCCcCCCCeEEEEeecCChhHH-HHHhhc----cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh-hcc
Confidence            4556667789999999999999994 455432    48999999999999999876     234689999998653 443


Q ss_pred             cccCcEeEEEEcccccchhh-HHHHHHHHHHhccCCCEEEEEec
Q psy11646        100 IFLAKFNKIFSFYCLHWVQD-QRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d-~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                         ++||+|+++.++|+..+ .+.+++++.++|+|||.+++...
T Consensus       118 ---~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  158 (194)
T d1dusa_         118 ---RKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             ---SCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ---CCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence               89999999999988766 47789999999999999887653

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.55  E-value=1.2e-14  Score=131.68  Aligned_cols=111  Identities=18%  Similarity=0.262  Sum_probs=89.7

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQN   96 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~   96 (433)
                      .++..+++.+..++|.+|||||||+|..+ ..+++..... .+|+++|+++.+++.|++++   ...++.+.++|.....
T Consensus        62 ~~~a~~l~~l~l~~g~~VLdiG~GtG~~s-~~la~~~~~~-g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~  139 (213)
T d1dl5a1          62 SLMALFMEWVGLDKGMRVLEIGGGTGYNA-AVMSRVVGEK-GLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV  139 (213)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHH-HHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred             hhhHHHHHhhhccccceEEEecCccchhH-HHHHHHhCCC-CcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc
Confidence            34556677788899999999999999999 5565554333 49999999999999999988   4578899999987654


Q ss_pred             ccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         97 LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        97 l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ...   ++||+|++..+++++++      ++.+.|||||++++..
T Consensus       140 ~~~---~~fD~I~~~~~~~~~p~------~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         140 PEF---SPYDVIFVTVGVDEVPE------TWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             GGG---CCEEEEEECSBBSCCCH------HHHHHEEEEEEEEEEB
T ss_pred             ccc---cchhhhhhhccHHHhHH------HHHHhcCCCcEEEEEE
Confidence            443   78999999999998753      4678899999998753

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.54  E-value=1.2e-14  Score=135.16  Aligned_cols=114  Identities=20%  Similarity=0.351  Sum_probs=91.6

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCc
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQN   96 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~   96 (433)
                      ....+++.+.+.+..+|||||||+|.++ ..+++..|..  +++++|+ +.+++.|+++.    ...+++++.+|+.+. 
T Consensus        68 ~~~~~~~~~d~~~~~~VLDvGcG~G~~~-~~la~~~p~~--~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-  142 (253)
T d1tw3a2          68 AFDAPAAAYDWTNVRHVLDVGGGKGGFA-AAIARRAPHV--SATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-  142 (253)
T ss_dssp             TTHHHHHHSCCTTCSEEEEETCTTSHHH-HHHHHHCTTC--EEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-
T ss_pred             HHHHHHhhcCCccCCEEEEeCCCCCHHH-HHHHHhccee--EEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh-
Confidence            3445667777778889999999999999 4555566654  8999998 67899998877    246899999998653 


Q ss_pred             ccccccCcEeEEEEcccccchhhH--HHHHHHHHHhccCCCEEEEEecc
Q psy11646         97 LESIFLAKFNKIFSFYCLHWVQDQ--RQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        97 l~~~~~~~fD~Vis~~~l~~~~d~--~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      .+    .+||+|++..++|++++.  ..++++++++|||||++++.+..
T Consensus       143 ~~----~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~  187 (253)
T d1tw3a2         143 LP----RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  187 (253)
T ss_dssp             CS----SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cc----cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence            22    579999999999998654  47799999999999999987643

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.7e-14  Score=132.20  Aligned_cols=116  Identities=13%  Similarity=0.127  Sum_probs=86.7

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCc
Q psy11646         19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQN   96 (433)
Q Consensus        19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~   96 (433)
                      +.+...+...+. .+|.+|||||||+|..+. .+++..   ..+++|+|+|+.+++.|+++.  ...++.+...++... 
T Consensus        40 ~~~~~~la~~~~-~~g~~VLdIGcG~G~~a~-~~a~~~---~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~-  113 (229)
T d1zx0a1          40 TPYMHALAAAAS-SKGGRVLEVGFGMAIAAS-KVQEAP---IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV-  113 (229)
T ss_dssp             HHHHHHHHHHHT-TTCEEEEEECCTTSHHHH-HHHTSC---EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH-
T ss_pred             HHHHHHHHHhhc-cCCCeEEEeeccchHHHH-HHHHcC---CCeEEEeCCCHHHHHHHHHHhhhccccccccccccccc-
Confidence            344445555443 568899999999999984 444332   248999999999999999988  335567777765542 


Q ss_pred             ccccccCcEeEEE-----EcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646         97 LESIFLAKFNKIF-----SFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        97 l~~~~~~~fD~Vi-----s~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      ......++||.|+     +...++|..+...++++++++|||||.+++.
T Consensus       114 ~~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         114 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             GGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ccccccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            1223347898887     4677788889999999999999999998763

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.51  E-value=1.4e-14  Score=133.95  Aligned_cols=124  Identities=20%  Similarity=0.287  Sum_probs=93.6

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCccc
Q psy11646         23 SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLE   98 (433)
Q Consensus        23 ~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~   98 (433)
                      ..++..+..+||.+|||+|||+|.++..++....+.+  +|+++|+++++++.|++++    ...++++...|+.+. ++
T Consensus        75 ~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g--~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~  151 (250)
T d1yb2a1          75 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKG--TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-IS  151 (250)
T ss_dssp             ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSS--EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CC
T ss_pred             HHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCc--EEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cc
Confidence            3567778889999999999999999944444334444  9999999999999999986    347899999998765 33


Q ss_pred             ccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcC
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRK  157 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~  157 (433)
                      +   +.||.|++     +++++..++.++.++|||||++++..++..........+...
T Consensus       152 ~---~~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~  202 (250)
T d1yb2a1         152 D---QMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSAS  202 (250)
T ss_dssp             S---CCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGG
T ss_pred             c---ceeeeeee-----cCCchHHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHC
Confidence            3   78999987     355777899999999999999998777655555555555443

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.50  E-value=4.2e-14  Score=131.20  Aligned_cols=116  Identities=18%  Similarity=0.297  Sum_probs=87.6

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEec
Q psy11646         14 QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVAN   91 (433)
Q Consensus        14 ~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~D   91 (433)
                      .++.++-+++.+....  +++.+|||+|||+|.++. .+++.   + .+|+|+|+|+.|++.|++++  ..-++++.++|
T Consensus       103 ~H~TT~l~l~~l~~~~--~~g~~VLDiGcGsG~l~i-~aa~~---g-~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d  175 (254)
T d2nxca1         103 HHETTRLALKALARHL--RPGDKVLDLGTGSGVLAI-AAEKL---G-GKALGVDIDPMVLPQAEANAKRNGVRPRFLEGS  175 (254)
T ss_dssp             CSHHHHHHHHHHHHHC--CTTCEEEEETCTTSHHHH-HHHHT---T-CEEEEEESCGGGHHHHHHHHHHTTCCCEEEESC
T ss_pred             ccchhhHHHHHHHhhc--CccCEEEEcccchhHHHH-HHHhc---C-CEEEEEECChHHHHHHHHHHHHcCCceeEEecc
Confidence            4445556666655543  689999999999999984 44432   3 58999999999999999987  34467788888


Q ss_pred             ccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         92 IADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        92 i~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      +... ++   .++||+|+++...+.   ....+..+.++|||||+++++...
T Consensus       176 ~~~~-~~---~~~fD~V~ani~~~~---l~~l~~~~~~~LkpGG~lilSgil  220 (254)
T d2nxca1         176 LEAA-LP---FGPFDLLVANLYAEL---HAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             HHHH-GG---GCCEEEEEEECCHHH---HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cccc-cc---ccccchhhhcccccc---HHHHHHHHHHhcCCCcEEEEEecc
Confidence            7643 33   379999999866554   456788999999999999987543

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=7.4e-15  Score=139.44  Aligned_cols=110  Identities=22%  Similarity=0.323  Sum_probs=78.3

Q ss_pred             cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCC-----CeEEEEecccCCcccccc
Q psy11646         29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNP-----KLEFVVANIADQNLESIF  101 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~-----~i~~~~~Di~~~~l~~~~  101 (433)
                      ++.+++.+|||+|||+|..+..++.    .+ .+|+|+|+|+.|++.|+++.  ...     ...+..+++.........
T Consensus        52 l~~~~~~~vLD~GcG~G~~~~~la~----~g-~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (292)
T d1xvaa_          52 LRQHGCHRVLDVACGTGVDSIMLVE----EG-FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA  126 (292)
T ss_dssp             HHHTTCCEEEESSCTTSHHHHHHHH----TT-CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC
T ss_pred             hhhcCCCEEEEecCCCcHHHHHHHH----cC-CeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCC
Confidence            3335678999999999999955443    23 59999999999999998876  111     233444444332111112


Q ss_pred             cCcEeEEEEc-ccccchh-------hHHHHHHHHHHhccCCCEEEEEecc
Q psy11646        102 LAKFNKIFSF-YCLHWVQ-------DQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       102 ~~~fD~Vis~-~~l~~~~-------d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      .++||.|++. .+++|+.       +...++++++++|||||.+++....
T Consensus       127 ~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  176 (292)
T d1xvaa_         127 GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  176 (292)
T ss_dssp             TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence            3789999975 4777763       4678999999999999999987543

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.6e-14  Score=130.72  Aligned_cols=119  Identities=17%  Similarity=0.229  Sum_probs=82.2

Q ss_pred             HHHHHHHhcCC--CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCe-------------
Q psy11646         21 LLSQYIDQFKW--TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKL-------------   85 (433)
Q Consensus        21 ll~~l~~~l~~--~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i-------------   85 (433)
                      ++..+.+.+..  .++.+|||||||+|.++ .+++.   .++.+|+|+|+|+.|++.|++++.....             
T Consensus        37 ~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~-~~~~~---~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~  112 (257)
T d2a14a1          37 NLECLHKTFGPGGLQGDTLIDIGSGPTIYQ-VLAAC---DSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACE  112 (257)
T ss_dssp             HHHHHHHHHSTTSCCEEEEEESSCTTCCGG-GTTGG---GTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCCEEEEECCCCCHhH-HHHhc---cccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHH
Confidence            33444444432  35789999999999987 34432   2335799999999999999988611111             


Q ss_pred             --------------------EEEEecccCCc-ccccccCcEeEEEEcccccchh----hHHHHHHHHHHhccCCCEEEEE
Q psy11646         86 --------------------EFVVANIADQN-LESIFLAKFNKIFSFYCLHWVQ----DQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        86 --------------------~~~~~Di~~~~-l~~~~~~~fD~Vis~~~l~~~~----d~~~~l~~i~~~LkpGG~lll~  140 (433)
                                          .....++.... ......++||+|++..++||+.    +...+++++.++|||||.+++.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~  192 (257)
T d2a14a1         113 LEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT  192 (257)
T ss_dssp             HTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEE
Confidence                                11112222211 1123458899999999999984    6778999999999999999997


Q ss_pred             ecc
Q psy11646        141 LNA  143 (433)
Q Consensus       141 ~~~  143 (433)
                      ...
T Consensus       193 ~~~  195 (257)
T d2a14a1         193 VTL  195 (257)
T ss_dssp             EES
T ss_pred             Eec
Confidence            654

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.45  E-value=1.8e-13  Score=124.69  Aligned_cols=129  Identities=16%  Similarity=0.233  Sum_probs=94.2

Q ss_pred             hhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccC-CCCCcEEEEEeCCHHHHHHHHhhc-CCCC
Q psy11646          7 YETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNL-PKSVVKLVGLDVSPNMIKHAKNHH-TNPK   84 (433)
Q Consensus         7 Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~-~~~~~~v~gvDiS~~~l~~A~~~~-~~~~   84 (433)
                      |...++.+...+..++. -++.+..+||.+|||+|||+|..+ ..++... +.+  +|+|+|+|+.|++.++++. ...+
T Consensus        48 ~R~w~p~rSKlaa~i~~-~l~~l~i~pG~~VLDlGaGsG~~t-~~la~~VG~~G--~V~aVD~s~~~l~~a~~~a~~~~~  123 (227)
T d1g8aa_          48 YRIWNPNRSKLGAAIMN-GLKNFPIKPGKSVLYLGIASGTTA-SHVSDIVGWEG--KIFGIEFSPRVLRELVPIVEERRN  123 (227)
T ss_dssp             EEECCTTTCHHHHHHHT-TCCCCCCCTTCEEEEETTTSTTHH-HHHHHHHCTTS--EEEEEESCHHHHHHHHHHHSSCTT
T ss_pred             EEEECCCccHHHHHHHc-cccccccCCCCEEEEeccCCCHHH-HHHHHHhCCCC--EEEEEeCcHHHHHHHHHHHHhcCC
Confidence            33344444433333322 245567889999999999999999 4555554 444  9999999999999999988 5567


Q ss_pred             eEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         85 LEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        85 i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +..+..|.............+|.|++  .+++.++...+++++.+.|||||.++++.
T Consensus       124 ~~~i~~d~~~~~~~~~~~~~vD~i~~--d~~~~~~~~~~l~~~~~~LkpgG~lvi~~  178 (227)
T d1g8aa_         124 IVPILGDATKPEEYRALVPKVDVIFE--DVAQPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             EEEEECCTTCGGGGTTTCCCEEEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceEEEEECCCcccccccccceEEEEE--EccccchHHHHHHHHHHhcccCCeEEEEE
Confidence            88888888654322233467888876  45556678889999999999999998875

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2e-13  Score=124.37  Aligned_cols=107  Identities=21%  Similarity=0.337  Sum_probs=84.5

Q ss_pred             HHHHhc--CCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--------CCCCeEEEEeccc
Q psy11646         24 QYIDQF--KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--------TNPKLEFVVANIA   93 (433)
Q Consensus        24 ~l~~~l--~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--------~~~~i~~~~~Di~   93 (433)
                      .+++.+  ..+||.+|||||||+|..+ .++++..... .+|+++|+++++++.|++++        ...++.+..+|..
T Consensus        65 ~~le~L~~~l~~g~~VLdiG~GsGy~t-a~la~l~~~~-g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~  142 (224)
T d1i1na_          65 YALELLFDQLHEGAKALDVGSGSGILT-ACFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR  142 (224)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHH-HHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG
T ss_pred             HHHHHHhhccCCCCeEEEecCCCCHHH-HHHHHHhCCC-ceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecc
Confidence            444444  4578999999999999998 5666554333 49999999999999998876        1357889999987


Q ss_pred             CCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         94 DQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        94 ~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ....+.   +.||.|++..+++++++      .+.+.|||||++++..
T Consensus       143 ~~~~~~---~~fD~I~~~~~~~~ip~------~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         143 MGYAEE---APYDAIHVGAAAPVVPQ------ALIDQLKPGGRLILPV  181 (224)
T ss_dssp             GCCGGG---CCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred             cccchh---hhhhhhhhhcchhhcCH------HHHhhcCCCcEEEEEE
Confidence            654443   78999999999988753      4678999999999865

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.1e-13  Score=126.19  Aligned_cols=107  Identities=18%  Similarity=0.229  Sum_probs=78.1

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCC--C-------------------------
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNP--K-------------------------   84 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~--~-------------------------   84 (433)
                      ..|.+|||||||+|.++...+.+    .+.+|+|+|+|+.|++.|++++...  .                         
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~----~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  128 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACS----HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER  128 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGG----GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcc----cCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHH
Confidence            35889999999999876222322    2248999999999999999876211  1                         


Q ss_pred             ------eEEEEecccCCccc---ccccCcEeEEEEcccccchh----hHHHHHHHHHHhccCCCEEEEEec
Q psy11646         85 ------LEFVVANIADQNLE---SIFLAKFNKIFSFYCLHWVQ----DQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        85 ------i~~~~~Di~~~~l~---~~~~~~fD~Vis~~~l~~~~----d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                            ......|+......   ....++||+|++.+++||+.    +...++++++++|||||.+++...
T Consensus       129 ~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~  199 (263)
T d2g72a1         129 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA  199 (263)
T ss_dssp             HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             HhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence                  12344565443211   12246899999999999984    578899999999999999998764

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.42  E-value=2.1e-13  Score=127.38  Aligned_cols=123  Identities=17%  Similarity=0.285  Sum_probs=95.6

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccC-CCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCc
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNL-PKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQN   96 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~-~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~   96 (433)
                      ...++..+..+||.+|||+|||+|..+. .+++.. +.+  +|+++|+++++++.|++++   + ..++.+...|+... 
T Consensus        92 ~~~Ii~~l~i~pG~~VLDiG~GsG~lt~-~lA~~~~~~G--~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~-  167 (266)
T d1o54a_          92 SSFIAMMLDVKEGDRIIDTGVGSGAMCA-VLARAVGSSG--KVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-  167 (266)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHH-HHHHHTTTTC--EEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-
T ss_pred             HHHHHHhhCCCCCCEEEECCCCCCHHHH-HHHHHhCCCc--EEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc-
Confidence            3356777888999999999999999994 555444 444  9999999999999999988   2 35777777776443 


Q ss_pred             ccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhc
Q psy11646         97 LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSR  156 (433)
Q Consensus        97 l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~  156 (433)
                      +.   ...||.|+.     +++++..+++++.++|||||++++..++...+......+..
T Consensus       168 ~~---~~~~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~  219 (266)
T d1o54a_         168 FD---EKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQE  219 (266)
T ss_dssp             CS---CCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred             cc---ccceeeeEe-----cCCCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHH
Confidence            22   367898864     67788999999999999999999887766655555555554

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.42  E-value=3.2e-13  Score=121.15  Aligned_cols=105  Identities=12%  Similarity=0.287  Sum_probs=86.5

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      ++..|||||||+|.++ ..+++..|..  .++|+|+++.++..|.++.   +..|+.+.++|+.... ..+.++++|.|+
T Consensus        29 ~~PlvLeIGcG~G~~~-~~lA~~~p~~--~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~-~~~~~~~~d~v~  104 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFI-SGMAKQNPDI--NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT-DVFEPGEVKRVY  104 (204)
T ss_dssp             CCCEEEEECCTTSHHH-HHHHHHCTTS--EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH-HHCCTTSCCEEE
T ss_pred             CCceEEEEEecCcHHH-HHHHHhCCCC--cEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhh-cccCchhhhccc
Confidence            3457999999999999 5556667765  9999999999999998877   5578999999987642 224568999999


Q ss_pred             EcccccchhhH--------HHHHHHHHHhccCCCEEEEEe
Q psy11646        110 SFYCLHWVQDQ--------RQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       110 s~~~l~~~~d~--------~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +++...|....        ...++.++++|||||.+++.+
T Consensus       105 i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         105 LNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             EESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             cccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            99988876542        478999999999999998864

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.41  E-value=4e-13  Score=124.98  Aligned_cols=112  Identities=18%  Similarity=0.302  Sum_probs=90.0

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcc
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNL   97 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l   97 (433)
                      ...+++.+.+.+..+|||||||+|.++ ..+++..|..  +++++|+ +.+++.|+++.    ...++.+..+|..+. .
T Consensus        70 ~~~~~~~~d~~~~~~vlDvG~G~G~~~-~~l~~~~P~~--~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~-~  144 (256)
T d1qzza2          70 YEAPADAYDWSAVRHVLDVGGGNGGML-AAIALRAPHL--RGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP-L  144 (256)
T ss_dssp             THHHHHTSCCTTCCEEEEETCTTSHHH-HHHHHHCTTC--EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C
T ss_pred             HHHHHhcCCCccCCEEEEECCCCCHHH-HHHHHhhcCc--EEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc-c
Confidence            345666677777889999999999999 4555566654  9999997 78899988876    346799999987652 3


Q ss_pred             cccccCcEeEEEEcccccchhhH--HHHHHHHHHhccCCCEEEEEec
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQDQ--RQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d~--~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      +    ..||+|++.+++|++++.  ..+++++++.|||||++++.+.
T Consensus       145 p----~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         145 P----VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             S----CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             c----ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence            3    569999999999998654  5679999999999999998764

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.41  E-value=5.8e-13  Score=120.98  Aligned_cols=106  Identities=17%  Similarity=0.270  Sum_probs=86.7

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCccccc
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLESI  100 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~~  100 (433)
                      ...+++.+..+++.+|||||||+|..+ .+++.+.    .+|+++|+++.+++.|+++. ...++.+..+|........ 
T Consensus        59 ~a~ml~~L~l~~g~~VLdIG~GsGy~t-a~La~l~----~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~-  132 (224)
T d1vbfa_          59 GIFMLDELDLHKGQKVLEIGTGIGYYT-ALIAEIV----DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEE-  132 (224)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHH-HHHHHHS----SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGG-
T ss_pred             HHHHHHHhhhcccceEEEecCCCCHHH-HHHHHHh----cccccccccHHHHHHHHHHHhcccccccccCchhhcchhh-
Confidence            345667778899999999999999999 6777553    38999999999999999987 5579999999986643333 


Q ss_pred             ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                        ++||.|++..+++++++      .+.+.|+|||+|++..
T Consensus       133 --~pfD~Iiv~~a~~~ip~------~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         133 --KPYDRVVVWATAPTLLC------KPYEQLKEGGIMILPI  165 (224)
T ss_dssp             --CCEEEEEESSBBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred             --hhHHHHHhhcchhhhhH------HHHHhcCCCCEEEEEE
Confidence              78999999999887753      4568899999998754

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.1e-13  Score=130.60  Aligned_cols=131  Identities=15%  Similarity=0.244  Sum_probs=96.1

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--------------CCCCeEEEE
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--------------TNPKLEFVV   89 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--------------~~~~i~~~~   89 (433)
                      .++..+..+||.+|||+|||+|.++..++....+.+  +|+++|+++++++.|++++              ...++.+..
T Consensus        89 ~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G--~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~  166 (324)
T d2b25a1          89 MILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQG--RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  166 (324)
T ss_dssp             HHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTC--EEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCc--EEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence            456667789999999999999999954444444555  9999999999999999875              135799999


Q ss_pred             ecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcC-CCccc
Q psy11646         90 ANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRK-PKWTE  162 (433)
Q Consensus        90 ~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~-~~W~~  162 (433)
                      .|+.... .......||.|+.     .++++..++.++.++|||||++++..++...+......+... ..|..
T Consensus       167 ~di~~~~-~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~  234 (324)
T d2b25a1         167 KDISGAT-EDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSC  234 (324)
T ss_dssp             SCTTCCC--------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEE
T ss_pred             cchhhcc-cccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCcee
Confidence            9987642 2233478999986     456677799999999999999998877766666665555432 24543

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=6.3e-13  Score=128.04  Aligned_cols=118  Identities=17%  Similarity=0.250  Sum_probs=91.4

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc------------CCCCeE
Q psy11646         19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH------------TNPKLE   86 (433)
Q Consensus        19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~------------~~~~i~   86 (433)
                      ...+.++++.+..+++.+|||||||+|..+..+ +...+.  .+++|+|+|+.+++.|+++.            ...+++
T Consensus       137 ~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~-a~~~~~--~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~  213 (328)
T d1nw3a_         137 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQV-AAATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT  213 (328)
T ss_dssp             HHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHH-HHHCCC--SEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred             HHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHH-HHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceE
Confidence            355677888898999999999999999998444 444333  48999999999999988753            235799


Q ss_pred             EEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         87 FVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        87 ~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ++++|+.+.++.+.. ...|+|+++.. .+.++...++.++.+.|||||+++...
T Consensus       214 ~~~gd~~~~~~~~~~-~~advi~~~~~-~f~~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         214 LERGDFLSEEWRERI-ANTSVIFVNNF-AFGPEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             EEECCTTSHHHHHHH-HHCSEEEECCT-TTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             EEECccccccccccc-CcceEEEEcce-ecchHHHHHHHHHHHhCCCCcEEEEec
Confidence            999999876554311 23577887654 456788899999999999999998753

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.34  E-value=3.9e-12  Score=113.95  Aligned_cols=105  Identities=15%  Similarity=0.343  Sum_probs=85.8

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      ....|||||||+|.++ ..+++..|..  .++|+|+++.++..|.++.   ...|+.+..+|+.... ..+...++|.|+
T Consensus        31 ~~plvLdIGcG~G~~~-~~lA~~~p~~--~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~-~~~~~~~~~~i~  106 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFV-SGMAKQNPDI--NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT-DYFEDGEIDRLY  106 (204)
T ss_dssp             CCCEEEEESCTTSHHH-HHHHHHCTTS--EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGG-GTSCTTCCSEEE
T ss_pred             CCCeEEEEeccCCHHH-HHHHHHCCCC--ceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHh-hhccCCceehhc
Confidence            3457999999999999 5566666765  8999999999999998877   5579999999998742 234558999999


Q ss_pred             EcccccchhhH--------HHHHHHHHHhccCCCEEEEEe
Q psy11646        110 SFYCLHWVQDQ--------RQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       110 s~~~l~~~~d~--------~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +++.-.|....        ...++.+.++|||||.+.+.+
T Consensus       107 i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         107 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             EESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            99887766432        578999999999999998864

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=3.7e-12  Score=118.94  Aligned_cols=119  Identities=21%  Similarity=0.288  Sum_probs=92.2

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEe
Q psy11646         14 QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVA   90 (433)
Q Consensus        14 ~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~   90 (433)
                      -|++++.+++..+.... ..+.+|||+|||+|+.+ ..++...|..  +++++|+|+.+++.|++++   +..++++.++
T Consensus        90 PRpeTE~lv~~~l~~~~-~~~~~vlDlGtGSG~I~-i~la~~~p~~--~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~  165 (274)
T d2b3ta1          90 PRPDTECLVEQALARLP-EQPCRILDLGTGTGAIA-LALASERPDC--EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQS  165 (274)
T ss_dssp             CCTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHH-HHHHHHCTTS--EEEEECSSHHHHHHHHHHHHHHTCCSEEEECC
T ss_pred             cccchhhhhhhHhhhhc-ccccceeeeehhhhHHH-HHHHhhCCcc--eeeeccchhHHHhHHHHHHHHhCcccceeeec
Confidence            34567778877777654 45678999999999999 4555666654  9999999999999999998   4467999999


Q ss_pred             cccCCcccccccCcEeEEEEcccccch-------------------------hhHHHHHHHHHHhccCCCEEEEE
Q psy11646         91 NIADQNLESIFLAKFNKIFSFYCLHWV-------------------------QDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        91 Di~~~~l~~~~~~~fD~Vis~~~l~~~-------------------------~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      |+.+. ++   .++||+|+|+...-..                         ......+.+..+.|+|||.+++-
T Consensus       166 d~~~~-~~---~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE  236 (274)
T d2b3ta1         166 DWFSA-LA---GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE  236 (274)
T ss_dssp             STTGG-GT---TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ccccc-cC---CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence            98653 33   3789999998765321                         11346788999999999998874

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.29  E-value=7.6e-12  Score=112.73  Aligned_cols=108  Identities=13%  Similarity=0.248  Sum_probs=88.7

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcc
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNL   97 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l   97 (433)
                      +...+++.+..+++.+|||||||+|..+ .+++....   .+|+++|.++.+++.|++++   +..++.+.++|......
T Consensus        66 ~~a~ml~~L~l~~g~~VLeIGsGsGY~t-aila~l~g---~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~  141 (215)
T d1jg1a_          66 MVAIMLEIANLKPGMNILEVGTGSGWNA-ALISEIVK---TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFP  141 (215)
T ss_dssp             HHHHHHHHHTCCTTCCEEEECCTTSHHH-HHHHHHHC---SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred             hHHHHHHhhccCccceEEEecCCCChhH-HHHHHhhC---ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCc
Confidence            4456677777899999999999999999 67766543   37999999999999999988   56899999999876543


Q ss_pred             cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ..   +.||.|++..++.++++      .+.+.|+|||++++..
T Consensus       142 ~~---~pfD~Iiv~~a~~~ip~------~l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         142 PK---APYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIPV  176 (215)
T ss_dssp             GG---CCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred             cc---CcceeEEeecccccCCH------HHHHhcCCCCEEEEEE
Confidence            33   88999999999987754      2567899999998754

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.26  E-value=8.6e-12  Score=122.35  Aligned_cols=118  Identities=15%  Similarity=0.226  Sum_probs=84.5

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC------------CCCeEE
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT------------NPKLEF   87 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~------------~~~i~~   87 (433)
                      ..+.++++.+.++++.+|||||||+|..+..+ +...+.  .+++|+|+|+.|++.|+++..            ...+.+
T Consensus       203 ~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~a-A~~~g~--~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~  279 (406)
T d1u2za_         203 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQA-ALECGC--ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF  279 (406)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHH-HHHHCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred             HHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHH-HHHcCC--CeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccccee
Confidence            56778888899999999999999999999444 433332  489999999999999988651            112222


Q ss_pred             -EEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         88 -VVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        88 -~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                       ..++....+........+|+|+++. +++.++...++.++.+.|||||+++...
T Consensus       280 ~~~~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         280 SLKKSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             EESSCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             eeeechhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence             2233322211112225678888765 4567788999999999999999988753

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=1.2e-11  Score=118.82  Aligned_cols=99  Identities=23%  Similarity=0.384  Sum_probs=78.3

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      .++.+|||||||+|.++ .++++.   +..+|+|+|.|+ +++.|++..    ...++.++++|+.+.++++   ++||+
T Consensus        37 ~~~~~VLDlGcGtG~ls-~~aa~~---Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~---~~~D~  108 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILS-MFAAKH---GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPF---PKVDI  108 (328)
T ss_dssp             HTTCEEEEETCTTSHHH-HHHHHT---CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSS---SCEEE
T ss_pred             CCcCEEEEeCCCCCHHH-HHHHHh---CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcc---cceeE
Confidence            46889999999999998 455543   324899999996 666776655    3468999999999877665   89999


Q ss_pred             EEEcccccch---hhHHHHHHHHHHhccCCCEEE
Q psy11646        108 IFSFYCLHWV---QDQRQAISNIYNLLMPGGEVL  138 (433)
Q Consensus       108 Vis~~~l~~~---~d~~~~l~~i~~~LkpGG~ll  138 (433)
                      |++....+++   .....++..+.++|||||.++
T Consensus       109 i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         109 IISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            9997665544   457788999999999999875

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.23  E-value=9.2e-12  Score=112.96  Aligned_cols=108  Identities=18%  Similarity=0.291  Sum_probs=83.6

Q ss_pred             HHHHhc--CCCCCCEEEEECCCCChhHHHHhcccCCCC----CcEEEEEeCCHHHHHHHHhhc--------CCCCeEEEE
Q psy11646         24 QYIDQF--KWTDNESVLDVGCGPGNVTSKLLLPNLPKS----VVKLVGLDVSPNMIKHAKNHH--------TNPKLEFVV   89 (433)
Q Consensus        24 ~l~~~l--~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~----~~~v~gvDiS~~~l~~A~~~~--------~~~~i~~~~   89 (433)
                      .+++.+  ..+++.+|||||||+|..+ .++++.....    ..+|+++|+++++++.|+++.        ...++.+..
T Consensus        69 ~~l~~L~~~l~~g~~VLeIGtGsGY~t-a~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~  147 (223)
T d1r18a_          69 FALEYLRDHLKPGARILDVGSGSGYLT-ACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE  147 (223)
T ss_dssp             HHHHHTTTTCCTTCEEEEESCTTSHHH-HHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHhhccCCCCeEEEecCCCCHHH-HHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence            344444  4578999999999999998 6666553221    148999999999999998874        235899999


Q ss_pred             ecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         90 ANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        90 ~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +|......+.   +.||.|++..++.++++      .+.+.|||||++++..
T Consensus       148 ~d~~~~~~~~---~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         148 GDGRKGYPPN---APYNAIHVGAAAPDTPT------ELINQLASGGRLIVPV  190 (223)
T ss_dssp             SCGGGCCGGG---CSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred             cccccccccc---cceeeEEEEeechhchH------HHHHhcCCCcEEEEEE
Confidence            9987654443   78999999999887754      4678999999998754

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.4e-11  Score=114.81  Aligned_cols=110  Identities=19%  Similarity=0.263  Sum_probs=81.5

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccc
Q psy11646         23 SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLES   99 (433)
Q Consensus        23 ~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~   99 (433)
                      +.+.+.....++.+|||||||+|.++ .++++.   +..+|+|+|.|+.+...++...   ...++.++.+|+++..++.
T Consensus        25 ~ai~~~~~~~~~~~VLDiGcG~G~ls-l~aa~~---Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~  100 (311)
T d2fyta1          25 DFIYQNPHIFKDKVVLDVGCGTGILS-MFAAKA---GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPV  100 (311)
T ss_dssp             HHHHHCGGGTTTCEEEEETCTTSHHH-HHHHHT---TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSC
T ss_pred             HHHHhccccCCcCEEEEECCCCCHHH-HHHHHc---CCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCcc
Confidence            33444444457899999999999998 444443   2248999999998875444332   4578999999999876654


Q ss_pred             cccCcEeEEEEcccccchh---hHHHHHHHHHHhccCCCEEEE
Q psy11646        100 IFLAKFNKIFSFYCLHWVQ---DQRQAISNIYNLLMPGGEVLL  139 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~---d~~~~l~~i~~~LkpGG~lll  139 (433)
                         ++||+|++....++..   ..+.++....++|||||.++-
T Consensus       101 ---~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         101 ---EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             ---SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             ---ccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence               8999999977666553   356777778899999999874

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.19  E-value=3.2e-11  Score=115.27  Aligned_cols=100  Identities=18%  Similarity=0.238  Sum_probs=77.5

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      .++.+|||||||+|.++ .++++.   +..+|+|+|.|+.+ ..|++..    ...++.++++|+.+.+++.   ++||+
T Consensus        32 ~~~~~VLDiGcG~G~ls-~~aa~~---Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~---~~~D~  103 (316)
T d1oria_          32 FKDKVVLDVGSGTGILC-MFAAKA---GARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVELPV---EKVDI  103 (316)
T ss_dssp             HTTCEEEEETCTTSHHH-HHHHHT---TCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCCSS---SCEEE
T ss_pred             CCcCEEEEEecCCcHHH-HHHHHh---CCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHccccc---ceeEE
Confidence            47899999999999998 444443   22489999999865 4444433    3467999999999876665   89999


Q ss_pred             EEEcccccch---hhHHHHHHHHHHhccCCCEEEE
Q psy11646        108 IFSFYCLHWV---QDQRQAISNIYNLLMPGGEVLL  139 (433)
Q Consensus       108 Vis~~~l~~~---~d~~~~l~~i~~~LkpGG~lll  139 (433)
                      |++....+++   ...+.++..+.++|||||.++-
T Consensus       104 ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         104 IISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             EEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             EeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            9997766655   3578899999999999998863

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.12  E-value=1.2e-10  Score=102.87  Aligned_cols=118  Identities=17%  Similarity=0.376  Sum_probs=91.7

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcc--
Q psy11646         22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNL--   97 (433)
Q Consensus        22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l--   97 (433)
                      ++++++.+...++..+||++||+|..+..++. ..+.+  +++|+|.++.|++.|++++  ...++.+.++++.+...  
T Consensus        12 l~evi~~l~~~~~~~~lD~t~G~Gghs~~il~-~~~~~--~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~   88 (192)
T d1m6ya2          12 VREVIEFLKPEDEKIILDCTVGEGGHSRAILE-HCPGC--RIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL   88 (192)
T ss_dssp             HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHH-HCTTC--EEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH
T ss_pred             HHHHHHhhCCCCCCEEEEecCCCcHHHHHHHh-cCCCC--eEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHH
Confidence            55677777778999999999999999966655 44654  9999999999999999988  34689999998865321  


Q ss_pred             cccccCcEeEEEEccccc---------chhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         98 ESIFLAKFNKIFSFYCLH---------WVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~---------~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      .....++||.|+.-..+.         .+......+..+.++|+|||.+++...
T Consensus        89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f  142 (192)
T d1m6ya2          89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF  142 (192)
T ss_dssp             HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred             HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence            122347899998765542         234467889999999999999988654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.02  E-value=3.3e-10  Score=108.41  Aligned_cols=108  Identities=19%  Similarity=0.206  Sum_probs=81.7

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCcccc--cccCcE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNLES--IFLAKF  105 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l~~--~~~~~f  105 (433)
                      +++.+|||+|||+|.++..++.    .+..+|+++|+|+.+++.|++++   + ..++++.++|+.+. +..  ....+|
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~----~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~-~~~~~~~~~~f  218 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAI----AGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEE-MEKLQKKGEKF  218 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHH----TTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH-HHHHHHTTCCE
T ss_pred             CCCCeeecccCcccchhhhhhh----cCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhh-hHHHHhccCCC
Confidence            5789999999999999955543    23248999999999999999998   2 25789999998653 211  234789


Q ss_pred             eEEEEcccccch---------hhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646        106 NKIFSFYCLHWV---------QDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       106 D~Vis~~~l~~~---------~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      |+|++.......         .+....+..+.++|+|||.+++...+.
T Consensus       219 D~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~  266 (324)
T d2as0a2         219 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  266 (324)
T ss_dssp             EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             CchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            999996654321         234567888899999999999876544

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.01  E-value=5.6e-10  Score=94.86  Aligned_cols=102  Identities=13%  Similarity=0.148  Sum_probs=76.7

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNKI  108 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~V  108 (433)
                      .|.+|||+|||+|.++..++.    .+..+|+++|.++.+++.+++++    ...+++++++|+... + ....++||+|
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~----rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~-l-~~~~~~fDiI   87 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVS----RGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA-I-DCLTGRFDLV   87 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHH----TTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH-H-HHBCSCEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHH----hCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccccc-c-ccccccccee
Confidence            688999999999999966654    33359999999999999999987    235689999998763 2 2345889999


Q ss_pred             EEcccccchhhHHHHHHHHH--HhccCCCEEEEEe
Q psy11646        109 FSFYCLHWVQDQRQAISNIY--NLLMPGGEVLLLL  141 (433)
Q Consensus       109 is~~~l~~~~d~~~~l~~i~--~~LkpGG~lll~~  141 (433)
                      ++..++.. ......+..+.  ++|+|||.+++..
T Consensus        88 f~DPPy~~-~~~~~~l~~i~~~~~L~~~g~iiiE~  121 (152)
T d2esra1          88 FLDPPYAK-ETIVATIEALAAKNLLSEQVMVVCET  121 (152)
T ss_dssp             EECCSSHH-HHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             Eechhhcc-chHHHHHHHHHHCCCcCCCeEEEEEe
Confidence            99876542 23344555543  5799999988753

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.99  E-value=1.6e-09  Score=99.22  Aligned_cols=116  Identities=19%  Similarity=0.282  Sum_probs=87.0

Q ss_pred             cHHHHHHHHHHHHHhcC-CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecc
Q psy11646         14 QQLDAAKLLSQYIDQFK-WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANI   92 (433)
Q Consensus        14 ~~~~~~~ll~~l~~~l~-~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di   92 (433)
                      +...+......+++.+. +....+|||||||+|.++.. +++..|..  +++..|+ |..++.+.   ...++++..+|+
T Consensus        61 M~~~s~~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~-l~~~~P~l--~~~v~Dl-p~vi~~~~---~~~ri~~~~gd~  133 (244)
T d1fp1d2          61 MVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLEL-IISKYPLI--KGINFDL-PQVIENAP---PLSGIEHVGGDM  133 (244)
T ss_dssp             HHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHH-HHHHCTTC--EEEEEEC-HHHHTTCC---CCTTEEEEECCT
T ss_pred             HHHHHHHHHHHHHHhcccccCCcEEEEecCCCcHHHHH-HHHHCCCC--eEEEecc-hhhhhccC---CCCCeEEecCCc
Confidence            33344455666777776 45678999999999999954 45566664  9999997 44443322   347899999998


Q ss_pred             cCCcccccccCcEeEEEEcccccchhh--HHHHHHHHHHhccCCCEEEEEec
Q psy11646         93 ADQNLESIFLAKFNKIFSFYCLHWVQD--QRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        93 ~~~~l~~~~~~~fD~Vis~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      .+. .+     ..|++++.+++|+.++  ...+++++++.|+|||++++.+.
T Consensus       134 ~~~-~p-----~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~  179 (244)
T d1fp1d2         134 FAS-VP-----QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEF  179 (244)
T ss_dssp             TTC-CC-----CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccc-cc-----cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            653 33     3599999999998865  45789999999999999999864

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.98  E-value=3.3e-10  Score=108.05  Aligned_cols=107  Identities=17%  Similarity=0.084  Sum_probs=80.8

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcc-cccccCcEeE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNL-ESIFLAKFNK  107 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l-~~~~~~~fD~  107 (433)
                      .+|.+|||++||+|.++..+ +.    ++.+|+++|+|+.+++.|++++   +..+++++++|+.+..- .....++||+
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~-a~----g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~  218 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHL-AL----GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDL  218 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHH-HH----HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hCCCeeeccCCCCcHHHHHH-Hh----cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCE
Confidence            36889999999999999544 32    2368999999999999999998   44679999999865311 1123478999


Q ss_pred             EEEcccccc---------hhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646        108 IFSFYCLHW---------VQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus       108 Vis~~~l~~---------~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      |++......         ..+...++..+.++|+|||.+++....
T Consensus       219 Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs  263 (318)
T d1wxxa2         219 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  263 (318)
T ss_dssp             EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            999764321         234556788999999999999887654

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.95  E-value=2e-09  Score=96.68  Aligned_cols=119  Identities=13%  Similarity=0.135  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEe
Q psy11646         15 QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVA   90 (433)
Q Consensus        15 ~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~   90 (433)
                      .+..-++|..++...   .+.+|||||||+|..+ ..++..++.+ .+++++|+++.+++.|++++    ...+++++.+
T Consensus        41 ~~~~G~lL~~lv~~~---kpk~ILEiGt~~G~St-i~la~al~~~-g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~G  115 (214)
T d2cl5a1          41 GDAKGQIMDAVIREY---SPSLVLELGAYCGYSA-VRMARLLQPG-ARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNG  115 (214)
T ss_dssp             HHHHHHHHHHHHHHH---CCSEEEEECCTTSHHH-HHHHTTCCTT-CEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES
T ss_pred             CHHHHHHHHHHHHhh---CCCEEEEEccCchhHH-HHHHHhCCCc-cEEEEEeccHHHHHHHHHHHHHcCCCccceeeec
Confidence            455667788877775   3569999999999999 4555555544 59999999999999999877    2357999999


Q ss_pred             cccCCcccc----cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646         91 NIADQNLES----IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        91 Di~~~~l~~----~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      |..+. ++.    ...++||+|+.-.. +........+.+..++|+|||.+++-
T Consensus       116 d~~e~-l~~l~~~~~~~~~D~ifiD~~-~~~~~~~~~l~~~~~lLkpGGvIv~D  167 (214)
T d2cl5a1         116 ASQDL-IPQLKKKYDVDTLDMVFLDHW-KDRYLPDTLLLEKCGLLRKGTVLLAD  167 (214)
T ss_dssp             CHHHH-GGGHHHHSCCCCEEEEEECSC-GGGHHHHHHHHHHTTCEEEEEEEEES
T ss_pred             ccccc-ccchhhcccccccceeeeccc-ccccccHHHHHHHhCccCCCcEEEEe
Confidence            98653 222    22367999998632 22112234577778999999987664

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.95  E-value=2.4e-09  Score=94.57  Aligned_cols=72  Identities=22%  Similarity=0.387  Sum_probs=58.4

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSF  111 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~  111 (433)
                      -.|.+|||+|||+|.++..++.    .+..+|+|+|+++.+++.|+++.  .++++.+.|+...  +    ++||+|+++
T Consensus        47 l~Gk~VLDlGcGtG~l~i~a~~----~ga~~V~~vDid~~a~~~ar~N~--~~~~~~~~D~~~l--~----~~fD~Vi~N  114 (197)
T d1ne2a_          47 IGGRSVIDAGTGNGILACGSYL----LGAESVTAFDIDPDAIETAKRNC--GGVNFMVADVSEI--S----GKYDTWIMN  114 (197)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHH----TTBSEEEEEESCHHHHHHHHHHC--TTSEEEECCGGGC--C----CCEEEEEEC
T ss_pred             CCCCEEEEeCCCCcHHHHHHHH----cCCCcccccccCHHHHHHHHHcc--ccccEEEEehhhc--C----CcceEEEeC
Confidence            3689999999999998743332    22248999999999999999997  6789999998763  2    789999999


Q ss_pred             cccc
Q psy11646        112 YCLH  115 (433)
Q Consensus       112 ~~l~  115 (433)
                      ..+.
T Consensus       115 PPfg  118 (197)
T d1ne2a_         115 PPFG  118 (197)
T ss_dssp             CCC-
T ss_pred             cccc
Confidence            8864

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.92  E-value=4e-09  Score=93.71  Aligned_cols=89  Identities=13%  Similarity=0.190  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCC
Q psy11646         18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQ   95 (433)
Q Consensus        18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~   95 (433)
                      +..++ ..+....--.|.+|||+|||+|.++..++.    .+..+|+|+|+++.+++.|++++  ...+.++..+|+...
T Consensus        32 a~~~~-~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~----~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~  106 (201)
T d1wy7a1          32 ASELL-WLAYSLGDIEGKVVADLGAGTGVLSYGALL----LGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF  106 (201)
T ss_dssp             HHHHH-HHHHHTTSSTTCEEEEETCTTCHHHHHHHH----TTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC
T ss_pred             HHHHH-HHHHhcCCCCCCEEEECcCcchHHHHHHHH----cCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh
Confidence            33433 333444334688999999999999854443    23248999999999999999988  345678888887653


Q ss_pred             cccccccCcEeEEEEcccccch
Q psy11646         96 NLESIFLAKFNKIFSFYCLHWV  117 (433)
Q Consensus        96 ~l~~~~~~~fD~Vis~~~l~~~  117 (433)
                            .++||+|+++..+...
T Consensus       107 ------~~~fD~Vi~nPP~~~~  122 (201)
T d1wy7a1         107 ------NSRVDIVIMNPPFGSQ  122 (201)
T ss_dssp             ------CCCCSEEEECCCCSSS
T ss_pred             ------CCcCcEEEEcCccccc
Confidence                  2789999999887544

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.92  E-value=1.3e-09  Score=100.89  Aligned_cols=98  Identities=14%  Similarity=0.193  Sum_probs=76.1

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      ++|.+|||+|||+|.++..++. . +.  .+|+++|+++.+++.+++++    ...++++.++|+.+... .   +.||.
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~-~-~~--~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~---~~~D~  177 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAV-Y-GK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-E---NIADR  177 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHH-H-TC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-C---SCEEE
T ss_pred             CCccEEEECcceEcHHHHHHHH-h-CC--cEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-C---CCCCE
Confidence            6899999999999999955543 2 22  48999999999999999988    23569999999987532 2   78999


Q ss_pred             EEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |++...-.    ....+..+.++|+|||.+.+..
T Consensus       178 Ii~~~p~~----~~~~l~~a~~~l~~gG~lh~~~  207 (260)
T d2frna1         178 ILMGYVVR----THEFIPKALSIAKDGAIIHYHN  207 (260)
T ss_dssp             EEECCCSS----GGGGHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCCCc----hHHHHHHHHhhcCCCCEEEEEe
Confidence            99875532    2345667788999999986643

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.89  E-value=4.6e-09  Score=99.83  Aligned_cols=108  Identities=13%  Similarity=0.110  Sum_probs=81.8

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-----CCCCeEEEEecccCCcccc--cccCc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-----TNPKLEFVVANIADQNLES--IFLAK  104 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-----~~~~i~~~~~Di~~~~l~~--~~~~~  104 (433)
                      .+|.+|||++||+|.++..+++    .+..+|+++|+|+.+++.|++++     ...+++++++|+.+. +..  ....+
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~----~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~-l~~~~~~~~~  217 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAM----GGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY-FKYARRHHLT  217 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHH----TTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH-HHHHHHTTCC
T ss_pred             hCCCceeecCCCCcHHHHHHHh----CCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHH-HHHHHhhcCC
Confidence            4789999999999999854443    23348999999999999999988     235789999998653 222  22368


Q ss_pred             EeEEEEccccc---------chhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646        105 FNKIFSFYCLH---------WVQDQRQAISNIYNLLMPGGEVLLLLNAF  144 (433)
Q Consensus       105 fD~Vis~~~l~---------~~~d~~~~l~~i~~~LkpGG~lll~~~~~  144 (433)
                      ||+|++...-.         ...+....++.+.++|+|||.++++....
T Consensus       218 fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~  266 (317)
T d2b78a2         218 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  266 (317)
T ss_dssp             EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            99999865421         22356678899999999999999876543

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.88  E-value=1.8e-09  Score=93.57  Aligned_cols=103  Identities=17%  Similarity=0.120  Sum_probs=68.7

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCC-cccccccCcEeEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQ-NLESIFLAKFNKI  108 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~-~l~~~~~~~fD~V  108 (433)
                      ..+.+|||+|||+|.++..++.    .+ .+++++|.++.+++.+++++  ..-..++...+.... +......++||+|
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~~----~g-a~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~I  114 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAAS----EG-WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVA  114 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHH----TT-CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCeEEEeccccchhhhhhhh----cc-chhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCcccee
Confidence            5688999999999999865554    33 58999999999999999987  111223444443221 1111234789999


Q ss_pred             EEcccccchhhHHHHHHHH--HHhccCCCEEEEEe
Q psy11646        109 FSFYCLHWVQDQRQAISNI--YNLLMPGGEVLLLL  141 (433)
Q Consensus       109 is~~~l~~~~d~~~~l~~i--~~~LkpGG~lll~~  141 (433)
                      ++..+++.  +....+..+  ..+|+|||.+++..
T Consensus       115 f~DPPY~~--~~~~~l~~l~~~~ll~~~g~ivie~  147 (171)
T d1ws6a1         115 FMAPPYAM--DLAALFGELLASGLVEAGGLYVLQH  147 (171)
T ss_dssp             EECCCTTS--CTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred             EEcccccc--CHHHHHHHHHHcCCcCCCeEEEEEe
Confidence            99877653  222233333  35799999887753

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=9.9e-09  Score=94.21  Aligned_cols=96  Identities=11%  Similarity=0.050  Sum_probs=66.3

Q ss_pred             HHHHHHHHHhcCC--CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecc
Q psy11646         19 AKLLSQYIDQFKW--TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANI   92 (433)
Q Consensus        19 ~~ll~~l~~~l~~--~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di   92 (433)
                      ...+..++.....  .+..+|||+|||+|+.+ .+++...+.  ++++|+|+|+.+++.|+++.    ...++.+...+.
T Consensus        45 ~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~-~~l~~~~~~--~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~  121 (250)
T d2h00a1          45 IHWVEDLIGHQDSDKSTLRRGIDIGTGASCIY-PLLGATLNG--WYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQ  121 (250)
T ss_dssp             HHHHHHHHCCCCGGGCCCCEEEEESCTTTTHH-HHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             HHHHHHHhhhhccCccccceEEEeCCCchHHH-HHHHHhCCC--ccccceecCHHHHHHHHHHHHHhCCCcceeeeeecc
Confidence            3444454433322  23569999999999999 555555554  59999999999999999998    345677777665


Q ss_pred             cCCccc---ccccCcEeEEEEcccccch
Q psy11646         93 ADQNLE---SIFLAKFNKIFSFYCLHWV  117 (433)
Q Consensus        93 ~~~~l~---~~~~~~fD~Vis~~~l~~~  117 (433)
                      ...-+.   ....++||+|+|+..++..
T Consensus       122 ~~~~~~~~~~~~~~~fD~ivsNPPY~~~  149 (250)
T d2h00a1         122 KTLLMDALKEESEIIYDFCMCNPPFFAN  149 (250)
T ss_dssp             TCSSTTTSTTCCSCCBSEEEECCCCC--
T ss_pred             HHhhhhhhhhcccCceeEEEecCccccc
Confidence            443222   1234689999999988753

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.88  E-value=5.6e-09  Score=98.31  Aligned_cols=118  Identities=12%  Similarity=0.081  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-----CCCCeEEEEec
Q psy11646         17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-----TNPKLEFVVAN   91 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-----~~~~i~~~~~D   91 (433)
                      ..++.+...+...  .++.+|||++||+|.++..++.    .+ .+|+++|.|+.+++.|++++     ...+++|++.|
T Consensus       118 ~nr~~~~~~~~~~--~~~~rVLdlf~~tG~~sl~aa~----~G-A~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D  190 (309)
T d2igta1         118 VHWEWLKNAVETA--DRPLKVLNLFGYTGVASLVAAA----AG-AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICED  190 (309)
T ss_dssp             HHHHHHHHHHHHS--SSCCEEEEETCTTCHHHHHHHH----TT-CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSC
T ss_pred             HHHHHHHHHHhhc--cCCCeEEEecCCCcHHHHHHHh----CC-CeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCC
Confidence            4445555555443  4688999999999999955443    33 58999999999999999987     23468999999


Q ss_pred             ccCCcccc--cccCcEeEEEEccccc---------ch-hhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         92 IADQNLES--IFLAKFNKIFSFYCLH---------WV-QDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        92 i~~~~l~~--~~~~~fD~Vis~~~l~---------~~-~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      +.+. +..  ....+||+|++...-.         .+ .+....+..+.++|+|||.+++...
T Consensus       191 ~~~~-l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~  252 (309)
T d2igta1         191 AMKF-IQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA  252 (309)
T ss_dssp             HHHH-HHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             HHHh-HHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence            8654 221  2247899999854421         12 2345667788899999997666543

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=3.3e-09  Score=92.86  Aligned_cols=102  Identities=12%  Similarity=0.044  Sum_probs=78.3

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKIF  109 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi  109 (433)
                      .+.+|||++||+|.++..++.    .+..+|+++|.++.+++.+++++   ...+..++..|+... +. ....+||+|+
T Consensus        43 ~~~~vLDlfaGsG~~gieals----rGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~-l~-~~~~~fDlIf  116 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALS----RYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSF-LA-QKGTPHNIVF  116 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHH----TTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHH-HS-SCCCCEEEEE
T ss_pred             chhhhhhhhccccceeeeEEe----cCcceeEEEEEeechhhHHHHHHhhccccceeeeeeccccc-cc-ccccccCEEE
Confidence            578999999999999977775    44468999999999999999987   456788888887653 22 2347899999


Q ss_pred             EcccccchhhHHHHHHHHHH--hccCCCEEEEEe
Q psy11646        110 SFYCLHWVQDQRQAISNIYN--LLMPGGEVLLLL  141 (433)
Q Consensus       110 s~~~l~~~~d~~~~l~~i~~--~LkpGG~lll~~  141 (433)
                      +..++.. ......+..+.+  +|+++|.+++..
T Consensus       117 ~DPPY~~-~~~~~~l~~l~~~~~L~~~~iIiiE~  149 (183)
T d2fpoa1         117 VDPPFRR-GLLEETINLLEDNGWLADEALIYVES  149 (183)
T ss_dssp             ECCSSST-TTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             EcCcccc-chHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            9888653 234555655554  699999888753

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.81  E-value=9.4e-09  Score=95.17  Aligned_cols=122  Identities=13%  Similarity=0.161  Sum_probs=82.9

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEE
Q psy11646         14 QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVV   89 (433)
Q Consensus        14 ~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~   89 (433)
                      -|++++.+++..++.....+..+|+|+|||+|..+.. ++. .+.  .+|+++|+|+.+++.|++++    ...++.+..
T Consensus        91 PRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~-la~-~~~--~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~  166 (271)
T d1nv8a_          91 PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVS-VAK-FSD--AIVFATDVSSKAVEIARKNAERHGVSDRFFVRK  166 (271)
T ss_dssp             CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHH-HHH-HSS--CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred             chhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhh-hhh-ccc--ceeeechhhhhHHHHHHHHHHHcCCCceeEEee
Confidence            3456777777777665545567899999999999844 443 354  49999999999999999998    234677777


Q ss_pred             ecccCCcccccccCcEeEEEEcccccchh---------hHH----------HHH-HHHHHhccCCCEEEEEe
Q psy11646         90 ANIADQNLESIFLAKFNKIFSFYCLHWVQ---------DQR----------QAI-SNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        90 ~Di~~~~l~~~~~~~fD~Vis~~~l~~~~---------d~~----------~~l-~~i~~~LkpGG~lll~~  141 (433)
                      .|+... .. ...++||+|+|+...-...         ++.          ..+ +-+.++|+|||.+++-.
T Consensus       167 ~~~~~~-~~-~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei  236 (271)
T d1nv8a_         167 GEFLEP-FK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI  236 (271)
T ss_dssp             SSTTGG-GG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred             cccccc-cc-cccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEE
Confidence            887553 22 2237899999987532110         111          112 22467899999877643

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.4e-08  Score=91.33  Aligned_cols=116  Identities=18%  Similarity=0.216  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEec
Q psy11646         16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVAN   91 (433)
Q Consensus        16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~D   91 (433)
                      +..-++|..+++..   ...+|||||||+|..+. .++...+.+ .+++.+|.++...+.|++.+    ...++++..+|
T Consensus        45 ~~~g~lL~~L~~~~---~~k~vLEiGt~~GyStl-~~a~al~~~-g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gd  119 (219)
T d2avda1          45 CEQAQLLANLARLI---QAKKALDLGTFTGYSAL-ALALALPAD-GRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKP  119 (219)
T ss_dssp             HHHHHHHHHHHHHT---TCCEEEEECCTTSHHHH-HHHTTSCTT-CEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred             HHHHHHHHHHHHcc---CCCeEEEEechhhHHHH-HHHHhCCCC-ceEEEEeechhHHHHHHHHHHhcCccceEEEEEee
Confidence            45567777777664   46799999999999994 555555544 59999999999999999987    34679999999


Q ss_pred             ccCCcccc----cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646         92 IADQNLES----IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        92 i~~~~l~~----~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +.+. ++.    ...++||+|+.-.-=   .+....+..+.++|+|||.+++.
T Consensus       120 a~e~-l~~~~~~~~~~~fD~ifiD~dk---~~y~~~~~~~~~lL~~GGvii~D  168 (219)
T d2avda1         120 ALET-LDELLAAGEAGTFDVAVVDADK---ENCSAYYERCLQLLRPGGILAVL  168 (219)
T ss_dssp             HHHH-HHHHHHTTCTTCEEEEEECSCS---TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhc-chhhhhhcccCCccEEEEeCCH---HHHHHHHHHHHHHhcCCcEEEEe
Confidence            7553 221    224789999986432   24456778888999999998875

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.76  E-value=2.9e-08  Score=87.40  Aligned_cols=107  Identities=17%  Similarity=0.274  Sum_probs=72.1

Q ss_pred             CCCCEEEEECCCCChhH--HHH-hcccC--CCCCcEEEEEeCCHHHHHHHHhhc-C--------------------C---
Q psy11646         32 TDNESVLDVGCGPGNVT--SKL-LLPNL--PKSVVKLVGLDVSPNMIKHAKNHH-T--------------------N---   82 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~--~~~-l~~~~--~~~~~~v~gvDiS~~~l~~A~~~~-~--------------------~---   82 (433)
                      .+..|||++|||+|.-.  ..+ +....  .....+++|+|+|+.+++.|++.. .                    .   
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            45679999999999732  122 22111  111258999999999999997533 0                    0   


Q ss_pred             ----------CCeEEEEecccCCcccccccCcEeEEEEcccccchhh--HHHHHHHHHHhccCCCEEEEE
Q psy11646         83 ----------PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQD--QRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        83 ----------~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~  140 (433)
                                ..+.+...+......  ...+.||+|+|.++|.+++.  ..++++++++.|+|||.|++.
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQY--NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSC--CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeehHHHHHHHHHHhhhhcccccc--CCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                      012334444332211  12378999999999999865  468999999999999988863

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.74  E-value=8.8e-09  Score=89.97  Aligned_cols=111  Identities=14%  Similarity=0.122  Sum_probs=81.7

Q ss_pred             HHHHhcCC-CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCccc
Q psy11646         24 QYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLE   98 (433)
Q Consensus        24 ~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~   98 (433)
                      .+...+.. ..+.+|||++||+|.++..++.    .|..+|+++|.++.+++.+++++    ...++++.+.|+... +.
T Consensus        31 alFn~l~~~~~~~~vLDlfaGsG~~g~ea~s----rGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~-l~  105 (182)
T d2fhpa1          31 SIFNMIGPYFDGGMALDLYSGSGGLAIEAVS----RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA-LE  105 (182)
T ss_dssp             HHHHHHCSCCSSCEEEETTCTTCHHHHHHHH----TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH-HH
T ss_pred             HHHHHHHHhcCCCEEEEcccccccccceeee----cchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhh-hh
Confidence            33344432 3689999999999999977776    44458999999999999999987    234789999998653 22


Q ss_pred             c--cccCcEeEEEEcccccchhhHHHHHHHHH--HhccCCCEEEEE
Q psy11646         99 S--IFLAKFNKIFSFYCLHWVQDQRQAISNIY--NLLMPGGEVLLL  140 (433)
Q Consensus        99 ~--~~~~~fD~Vis~~~l~~~~d~~~~l~~i~--~~LkpGG~lll~  140 (433)
                      .  ....+||+|++-.++.. .+....+..+.  .+|+|+|.+++-
T Consensus       106 ~~~~~~~~fDlIflDPPY~~-~~~~~~l~~i~~~~~L~~~giIi~E  150 (182)
T d2fhpa1         106 QFYEEKLQFDLVLLDPPYAK-QEIVSQLEKMLERQLLTNEAVIVCE  150 (182)
T ss_dssp             HHHHTTCCEEEEEECCCGGG-CCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             hhcccCCCcceEEechhhhh-hHHHHHHHHHHHCCCCCCCEEEEEE
Confidence            2  12368999999887542 34455666664  479999988764

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.71  E-value=2.2e-08  Score=91.51  Aligned_cols=116  Identities=21%  Similarity=0.322  Sum_probs=84.4

Q ss_pred             cHHHHHHHHHHHHHhcCCCC-CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecc
Q psy11646         14 QQLDAAKLLSQYIDQFKWTD-NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANI   92 (433)
Q Consensus        14 ~~~~~~~ll~~l~~~l~~~~-~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di   92 (433)
                      +...+......++..+.+.. ..+|||||||+|.++..+ ++..|..  ++++.|+.+. ++.++   ...++++..+|+
T Consensus        61 M~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l-~~~~P~l--~~~v~Dlp~v-i~~~~---~~~r~~~~~~d~  133 (243)
T d1kyza2          61 MSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTI-VSKYPTI--KGINFDLPHV-IEDAP---SYPGVEHVGGDM  133 (243)
T ss_dssp             HHHHHHHHHHHHHHHCCTTSSCSEEEEETCTTSHHHHHH-HHHCTTS--EEEEEECTTT-TTTCC---CCTTEEEEECCT
T ss_pred             HhHhhhhHHHHHHHhcccccCCcEEEEecCCCcHHHHHH-HHHCCCC--eEEEcccHHh-hhhcc---cCCceEEecccc
Confidence            33344445566677666543 578999999999999544 5566764  9999998653 33322   347899999998


Q ss_pred             cCCcccccccCcEeEEEEcccccchhh--HHHHHHHHHHhccCCCEEEEEec
Q psy11646         93 ADQNLESIFLAKFNKIFSFYCLHWVQD--QRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        93 ~~~~l~~~~~~~fD~Vis~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      .+. .+     ..|.++..+++|...+  ...+++++++.|+|||++++.+.
T Consensus       134 ~~~-~P-----~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~  179 (243)
T d1kyza2         134 FVS-IP-----KADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAEC  179 (243)
T ss_dssp             TTC-CC-----CCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred             ccc-CC-----CcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEE
Confidence            653 33     2467788889987754  56789999999999999998764

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.69  E-value=2.7e-08  Score=90.85  Aligned_cols=97  Identities=21%  Similarity=0.381  Sum_probs=75.4

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcc
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFY  112 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~  112 (433)
                      ...+|||||||+|.++. .+++..|..  ++++.|. |..++.+.   ...+++++.+|+.+. .     ..+|++++.+
T Consensus        80 ~~~~vvDvGGG~G~~~~-~l~~~~P~l--~~~v~Dl-p~vi~~~~---~~~rv~~~~gD~f~~-~-----p~aD~~~l~~  146 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAK-IICETFPKL--KCIVFDR-PQVVENLS---GSNNLTYVGGDMFTS-I-----PNADAVLLKY  146 (244)
T ss_dssp             TCSEEEEETCTTSHHHH-HHHHHCTTC--EEEEEEC-HHHHTTCC---CBTTEEEEECCTTTC-C-----CCCSEEEEES
T ss_pred             CceEEEEecCCccHHHH-HHHHhCCCC--eEEEecC-HHHHHhCc---ccCceEEEecCcccC-C-----CCCcEEEEEe
Confidence            45689999999999994 455566664  9999998 44554433   347999999998753 2     3579999999


Q ss_pred             cccchhhH--HHHHHHHHHhccCC---CEEEEEec
Q psy11646        113 CLHWVQDQ--RQAISNIYNLLMPG---GEVLLLLN  142 (433)
Q Consensus       113 ~l~~~~d~--~~~l~~i~~~LkpG---G~lll~~~  142 (433)
                      +||+.++.  ...|+++++.|+||   |++++.+.
T Consensus       147 vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~  181 (244)
T d1fp2a2         147 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM  181 (244)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             ecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEe
Confidence            99988764  57899999999998   77777653

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.63  E-value=6.1e-08  Score=87.87  Aligned_cols=90  Identities=12%  Similarity=0.302  Sum_probs=72.6

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCccc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLE   98 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~   98 (433)
                      .+++.+++.+...++++|||||||+|.+|..++. .   + .+++++|+++.+++.+++++ ..++++++.+|+.+.+++
T Consensus         8 ~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~-~---~-~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~   82 (235)
T d1qama_           8 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQ-R---C-NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFP   82 (235)
T ss_dssp             HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHH-H---S-SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCC
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHh-C---c-CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcccc
Confidence            5677788888888999999999999999955554 2   2 48999999999999999988 568999999999887655


Q ss_pred             ccccCcEeEEEEcccccch
Q psy11646         99 SIFLAKFNKIFSFYCLHWV  117 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~  117 (433)
                      .   .....|+++...+-.
T Consensus        83 ~---~~~~~vv~NLPYnIs   98 (235)
T d1qama_          83 K---NQSYKIFGNIPYNIS   98 (235)
T ss_dssp             S---SCCCEEEEECCGGGH
T ss_pred             c---cccceeeeeehhhhh
Confidence            3   334567788777643

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.62  E-value=5.4e-08  Score=87.73  Aligned_cols=115  Identities=14%  Similarity=0.203  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecc
Q psy11646         17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANI   92 (433)
Q Consensus        17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di   92 (433)
                      ..-++|..++...   ...+|||||+++|..+ ..++..++.. .+++.+|.++...+.|++.+    ...+++++.+++
T Consensus        46 ~~g~~L~~L~~~~---~~k~iLEiGT~~GySt-l~la~al~~~-g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a  120 (227)
T d1susa1          46 DEGQFLSMLLKLI---NAKNTMEIGVYTGYSL-LATALAIPED-GKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA  120 (227)
T ss_dssp             HHHHHHHHHHHHH---TCCEEEEECCGGGHHH-HHHHHHSCTT-CEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             HHHHHHHHHHHhc---CCCcEEEecchhhhhH-HHHHhhCCCC-cEEEEEeccchhHHHHHHHHHHhccccceeeeehHH
Confidence            3446676666664   4679999999999999 4555555554 59999999999999999988    235799999998


Q ss_pred             cCCccccc-----ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646         93 ADQNLESI-----FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        93 ~~~~l~~~-----~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      .+. ++..     ..++||+|+.-.-   -......+..+.++|+|||.+++-
T Consensus       121 ~~~-L~~l~~~~~~~~~fD~iFiDa~---k~~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         121 LPV-LDEMIKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             HHH-HHHHHHCGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             HHH-HHHHHhccccCCceeEEEeccc---hhhhHHHHHHHHhhcCCCcEEEEc
Confidence            653 3321     2368999998532   134566788888999999998875

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.62  E-value=7.7e-08  Score=91.57  Aligned_cols=120  Identities=18%  Similarity=0.235  Sum_probs=82.5

Q ss_pred             HHHHHHHH-hcCCCCCCEEEEECCCCChhHHHHhcccCCC--CCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccC
Q psy11646         20 KLLSQYID-QFKWTDNESVLDVGCGPGNVTSKLLLPNLPK--SVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIAD   94 (433)
Q Consensus        20 ~ll~~l~~-~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~--~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~   94 (433)
                      .++..++. .+..+++.+|||.|||+|.++..++......  ...+++|+|+++.++..|+.+.  ......+...|...
T Consensus       103 ~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~  182 (328)
T d2f8la1         103 FIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLA  182 (328)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS
T ss_pred             HHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence            34444443 3344678899999999999985554322111  1247999999999999998876  33556677777544


Q ss_pred             CcccccccCcEeEEEEcccccchhh------------------HHHHHHHHHHhccCCCEEEEEecc
Q psy11646         95 QNLESIFLAKFNKIFSFYCLHWVQD------------------QRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        95 ~~l~~~~~~~fD~Vis~~~l~~~~d------------------~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      ..    ...+||+|+++.++.....                  ....+..+.+.|+|||++.+..+.
T Consensus       183 ~~----~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~  245 (328)
T d2f8la1         183 NL----LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD  245 (328)
T ss_dssp             CC----CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             cc----ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence            32    2378999999988642211                  123588899999999998887653

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.53  E-value=3.9e-07  Score=84.51  Aligned_cols=103  Identities=14%  Similarity=0.169  Sum_probs=76.4

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-------------CCCCeEEEEecccCCcc
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-------------TNPKLEFVVANIADQNL   97 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-------------~~~~i~~~~~Di~~~~l   97 (433)
                      ++.+.+||-||+|.|..+..+++ . +.  .+++++|+++.+++.|++.+             ..++++++.+|.... +
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~-~-~~--~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~-l  144 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQ-H-DV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF-I  144 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTT-S-CC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHH-H
T ss_pred             CCCCceEEEecCCchHHHHHHHH-h-CC--ceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHH-H
Confidence            35678999999999999855554 2 22  48999999999999999765             146899999998654 2


Q ss_pred             cccccCcEeEEEEcccccchh--h--HHHHHHHHHHhccCCCEEEEE
Q psy11646         98 ESIFLAKFNKIFSFYCLHWVQ--D--QRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        98 ~~~~~~~fD~Vis~~~l~~~~--d--~~~~l~~i~~~LkpGG~lll~  140 (433)
                      ..  .++||+|++-..-..-.  .  ....++.+++.|+|||.++..
T Consensus       145 ~~--~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q  189 (276)
T d1mjfa_         145 KN--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  189 (276)
T ss_dssp             HH--CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             hc--cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence            22  37899999744322111  1  256899999999999988764

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.52  E-value=5e-07  Score=85.14  Aligned_cols=105  Identities=20%  Similarity=0.247  Sum_probs=77.7

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--------CCCCeEEEEecccCCccccccc
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--------TNPKLEFVVANIADQNLESIFL  102 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--------~~~~i~~~~~Di~~~~l~~~~~  102 (433)
                      ++.+.+||.||.|.|..+..+++ ..+.  .+++++|+++.+++.|++.+        ..++++++.+|.... +. ...
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~-~~~~--~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~-l~-~~~  149 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLK-HPTV--EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY-LE-RTE  149 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTT-STTC--CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH-HH-HCC
T ss_pred             CCCcceEEEeCCCchHHHHHHHh-cCCc--ceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHH-hh-hcC
Confidence            35578999999999999855543 3333  49999999999999999876        247899999998764 22 233


Q ss_pred             CcEeEEEEccc--ccc--h-hh--HHHHHHHHHHhccCCCEEEEE
Q psy11646        103 AKFNKIFSFYC--LHW--V-QD--QRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       103 ~~fD~Vis~~~--l~~--~-~d--~~~~l~~i~~~LkpGG~lll~  140 (433)
                      ++||+|++-..  ...  . ..  ...+++.+++.|+|||.++..
T Consensus       150 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         150 ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             CcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence            78999997432  111  1 11  256889999999999988764

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.50  E-value=7.7e-09  Score=94.52  Aligned_cols=92  Identities=20%  Similarity=0.366  Sum_probs=74.4

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCccc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLE   98 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~   98 (433)
                      .+++.+++.+...++.+|||||||+|.+|..++. .   + .+++++|+++.+++.+++++ ...+++++.+|+.+.+++
T Consensus        16 ~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~-~---~-~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~   90 (245)
T d1yuba_          16 KVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAK-I---S-KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFP   90 (245)
T ss_dssp             TTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHH-H---S-SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCC
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHh-h---c-CceeEeeecccchhhhhhhhhhccchhhhhhhhhccccc
Confidence            4456677778778899999999999999955443 2   2 48999999999999999887 557899999999887665


Q ss_pred             ccccCcEeEEEEcccccchhh
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQD  119 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~d  119 (433)
                      .   ..++.|+++..++....
T Consensus        91 ~---~~~~~vv~NLPY~Ist~  108 (245)
T d1yuba_          91 N---KQRYKIVGNIPYHLSTQ  108 (245)
T ss_dssp             C---SSEEEEEEECCSSSCHH
T ss_pred             c---ceeeeEeeeeehhhhHH
Confidence            4   67788999998776543

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.49  E-value=1.1e-07  Score=82.81  Aligned_cols=104  Identities=19%  Similarity=0.207  Sum_probs=75.5

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C--CCCeEEEEecccCCcccccccCcEeE
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T--NPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~--~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      .+.+|||+.||||.++.+++.    .|..+++.+|.+..+++..+++.   .  .....+...|+.+.........+||+
T Consensus        43 ~~~~vLDlFaGsG~~glEalS----RGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDl  118 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALS----RQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDV  118 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHH----TTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred             ccceEeecccCccceeeeeee----ecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccE
Confidence            578999999999999988876    45569999999999999999887   2  23455666665432111122367999


Q ss_pred             EEEcccccchhhHHHHHHHHH--HhccCCCEEEEEe
Q psy11646        108 IFSFYCLHWVQDQRQAISNIY--NLLMPGGEVLLLL  141 (433)
Q Consensus       108 Vis~~~l~~~~d~~~~l~~i~--~~LkpGG~lll~~  141 (433)
                      |++-.+... .....++..+.  .+|+++|.+++-.
T Consensus       119 IFlDPPY~~-~~~~~~l~~l~~~~~L~~~~liiiE~  153 (183)
T d2ifta1         119 VFLDPPFHF-NLAEQAISLLCENNWLKPNALIYVET  153 (183)
T ss_dssp             EEECCCSSS-CHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             EEechhHhh-hhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence            999888754 33455666665  4799999888754

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.46  E-value=1.1e-06  Score=81.26  Aligned_cols=104  Identities=18%  Similarity=0.190  Sum_probs=77.5

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-------CCCCeEEEEecccCCcccccccCc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-------TNPKLEFVVANIADQNLESIFLAK  104 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-------~~~~i~~~~~Di~~~~l~~~~~~~  104 (433)
                      +.+.+||-||.|.|..+..+++ ..+.  .+++.+|+++..++.|++.+       ..++++++..|.... +. ...++
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~-~~~~--~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~-l~-~~~~~  148 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILK-HPSV--KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH-IA-KSENQ  148 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTT-CTTC--SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH-HH-TCCSC
T ss_pred             CCcceEEecCCCCcHHHHHHHh-cCCc--ceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHH-Hh-hcCCC
Confidence            4578999999999999955543 3222  49999999999999999876       357899999997653 22 12378


Q ss_pred             EeEEEEcccccch--hh--HHHHHHHHHHhccCCCEEEEE
Q psy11646        105 FNKIFSFYCLHWV--QD--QRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       105 fD~Vis~~~l~~~--~d--~~~~l~~i~~~LkpGG~lll~  140 (433)
                      ||+|++-..-..-  ..  ....++.+++.|+|||.++..
T Consensus       149 yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q  188 (274)
T d1iy9a_         149 YDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ  188 (274)
T ss_dssp             EEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence            9999975322111  11  356899999999999998765

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.46  E-value=6.1e-07  Score=77.79  Aligned_cols=116  Identities=19%  Similarity=0.312  Sum_probs=88.1

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc--cc
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN--LE   98 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~--l~   98 (433)
                      ++++++..+..++++.++|..+|.|+.+..+|..   .  .+|+|+|..+.+++.|++.. ..++.+++.+.....  +.
T Consensus         6 ll~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~---~--~~viaiD~D~~ai~~a~~~~-~~~~~~~~~~f~~~~~~l~   79 (182)
T d1wg8a2           6 LYQEALDLLAVRPGGVYVDATLGGAGHARGILER---G--GRVIGLDQDPEAVARAKGLH-LPGLTVVQGNFRHLKRHLA   79 (182)
T ss_dssp             THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT---T--CEEEEEESCHHHHHHHHHTC-CTTEEEEESCGGGHHHHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc---c--CcEEEEhhhhhHHHHHhhcc-ccceeEeehHHHHHHHHHH
Confidence            3567777777889999999999999999777763   3  49999999999999998874 468999988876532  11


Q ss_pred             ccccCcEeEEEEcccccch---------hhHHHHHHHHHHhccCCCEEEEEec
Q psy11646         99 SIFLAKFNKIFSFYCLHWV---------QDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~---------~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ....+.+|.|+.-..+...         ......|....++|+|||.+++...
T Consensus        80 ~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f  132 (182)
T d1wg8a2          80 ALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF  132 (182)
T ss_dssp             HTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence            1223679999986554322         1245578889999999999988754

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=9.2e-07  Score=82.13  Aligned_cols=108  Identities=15%  Similarity=0.130  Sum_probs=77.8

Q ss_pred             cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-------CCCCeEEEEecccCCcccccc
Q psy11646         29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-------TNPKLEFVVANIADQNLESIF  101 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-------~~~~i~~~~~Di~~~~l~~~~  101 (433)
                      +.++.+.+||-||.|.|..+..+++ ..+.  .+++++|+++.+++.|++.+       ..++++++..|.... +.. .
T Consensus        74 ~~~~~pk~vLiiGgG~G~~~~~~l~-~~~~--~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~-l~~-~  148 (285)
T d2o07a1          74 CSHPNPRKVLIIGGGDGGVLREVVK-HPSV--ESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF-MKQ-N  148 (285)
T ss_dssp             TTSSSCCEEEEEECTTSHHHHHHTT-CTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-HHT-C
T ss_pred             hhCcCcCeEEEeCCCchHHHHHHHH-cCCc--ceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHH-Hhc-C
Confidence            3345678999999999999955543 3232  49999999999999999876       358999999997654 222 2


Q ss_pred             cCcEeEEEEcccccch-h---hHHHHHHHHHHhccCCCEEEEEe
Q psy11646        102 LAKFNKIFSFYCLHWV-Q---DQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       102 ~~~fD~Vis~~~l~~~-~---d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .++||+|++-..-..- .   -....++.+++.|+|||.++...
T Consensus       149 ~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         149 QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             SSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence            3789999985321110 1   12457899999999999987753

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.41  E-value=2.9e-07  Score=81.93  Aligned_cols=110  Identities=16%  Similarity=0.227  Sum_probs=76.1

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccccc
Q psy11646         21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESI  100 (433)
Q Consensus        21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~  100 (433)
                      +.+.+++.+...++.+|||.|||+|.++..+..... .. ..++|+|+++.++..+      ....+..+|.....    
T Consensus         7 i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~-~~-~~i~g~ei~~~~~~~~------~~~~~~~~~~~~~~----   74 (223)
T d2ih2a1           7 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHG-TA-YRFVGVEIDPKALDLP------PWAEGILADFLLWE----   74 (223)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHC-SC-SEEEEEESCTTTCCCC------TTEEEEESCGGGCC----
T ss_pred             HHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhcc-cc-ceEEeeecCHHHHhhc------ccceeeeeehhccc----
Confidence            445566667777899999999999999855544433 33 5899999998765433      24466677754432    


Q ss_pred             ccCcEeEEEEcccccchh-----------------------------hHHHHHHHHHHhccCCCEEEEEec
Q psy11646        101 FLAKFNKIFSFYCLHWVQ-----------------------------DQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~-----------------------------d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ....||+|+++..+....                             -....+....+.|+|||++.+..+
T Consensus        75 ~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p  145 (223)
T d2ih2a1          75 PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP  145 (223)
T ss_dssp             CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence            237899999987753210                             012446788899999999888764

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.38  E-value=1.8e-06  Score=80.42  Aligned_cols=104  Identities=22%  Similarity=0.219  Sum_probs=76.9

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-------CCCCeEEEEecccCCcccccccCc
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-------TNPKLEFVVANIADQNLESIFLAK  104 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-------~~~~i~~~~~Di~~~~l~~~~~~~  104 (433)
                      +.+.+||-||.|.|..+..+++ ..+.  .+++++|+++.+++.|++.+       ..++++++..|.... +. ...++
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~-~~~~--~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~-l~-~~~~~  162 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLK-HDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEY-VR-KFKNE  162 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTT-STTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-GG-GCSSC
T ss_pred             CCCceEEEecCCchHHHHHHHh-cCCC--ceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHH-Hh-cCCCC
Confidence            4568999999999999855543 3332  48999999999999999876       257999999998764 22 23478


Q ss_pred             EeEEEEcccccch-h----hHHHHHHHHHHhccCCCEEEEE
Q psy11646        105 FNKIFSFYCLHWV-Q----DQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       105 fD~Vis~~~l~~~-~----d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      ||+|++-..-... +    -....++.+++.|+|||.++..
T Consensus       163 yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q  203 (295)
T d1inla_         163 FDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE  203 (295)
T ss_dssp             EEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence            9999975332211 1    1357899999999999998765

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.27  E-value=3.7e-06  Score=78.63  Aligned_cols=105  Identities=18%  Similarity=0.175  Sum_probs=75.4

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-------CCCCeEEEEecccCCcccccccC
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-------TNPKLEFVVANIADQNLESIFLA  103 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-------~~~~i~~~~~Di~~~~l~~~~~~  103 (433)
                      ++.+.+||-||.|.|..+..+++ ..+-  .+++.+|+++.+++.|++.+       ..++++++..|.... +. ...+
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk-~~~v--~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~-l~-~~~~  178 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLK-HESV--EKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF-LK-NHKN  178 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTT-CTTC--CEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH-HH-HCTT
T ss_pred             CCCCCeEEEeCCCchHHHHHHHH-cCCc--ceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHH-HH-hCCC
Confidence            35577999999999999955554 3222  48999999999999999876       247899999998654 22 2347


Q ss_pred             cEeEEEEcccccch--h--hHHHHHHHHHHhccCCCEEEEE
Q psy11646        104 KFNKIFSFYCLHWV--Q--DQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       104 ~fD~Vis~~~l~~~--~--d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +||+|++-..-..-  .  -....++.+++.|+|||.++..
T Consensus       179 ~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q  219 (312)
T d2b2ca1         179 EFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ  219 (312)
T ss_dssp             CEEEEEECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred             CCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence            89999984332111  0  1256789999999999998875

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=3.8e-06  Score=74.11  Aligned_cols=100  Identities=19%  Similarity=0.210  Sum_probs=78.1

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeE
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNK  107 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~  107 (433)
                      .-++.+|+|+|+|.|--+ ..++-..|..  +++.+|.+..-+.+.++..   +..++++....++... .   ..+||+
T Consensus        63 ~~~~~~ilDiGsGaG~PG-i~laI~~p~~--~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~---~~~fD~  135 (207)
T d1jsxa_          63 YLQGERFIDVGTGPGLPG-IPLSIVRPEA--HFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-S---EPPFDG  135 (207)
T ss_dssp             GCCSSEEEEETCTTTTTH-HHHHHHCTTS--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-C---CSCEEE
T ss_pred             hhcCCceeeeeccCCcee-eehhhhcccc--eEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-c---ccccce
Confidence            345679999999999888 4455455664  9999999998888877654   5578999999988753 2   268999


Q ss_pred             EEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |++..+    .+....+.-+...++++|.+++.-
T Consensus       136 V~sRA~----~~~~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         136 VISRAF----ASLNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             EECSCS----SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             ehhhhh----cCHHHHHHHHHHhcCCCcEEEEEC
Confidence            988665    346678888899999999988763

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.21  E-value=5e-06  Score=77.24  Aligned_cols=107  Identities=14%  Similarity=0.227  Sum_probs=78.9

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-------CCCCeEEEEecccCCcccccccC
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-------TNPKLEFVVANIADQNLESIFLA  103 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-------~~~~i~~~~~Di~~~~l~~~~~~  103 (433)
                      ++...+||=||.|.|..+..+++ ..+-  .+++++|+++.+++.|++.+       ..++++++..|.... +.....+
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~-~~~~--~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~-l~~~~~~  153 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVAR-HASI--EQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF-LKNAAEG  153 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTT-CTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH-HHTSCTT
T ss_pred             CCCCcceEEecCCchHHHHHHHh-cccc--eeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHH-Hhhcccc
Confidence            35567999999999999955543 3332  48999999999999999876       358999999997654 2222236


Q ss_pred             cEeEEEEcccc--cchhh--HHHHHHHHHHhccCCCEEEEEe
Q psy11646        104 KFNKIFSFYCL--HWVQD--QRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       104 ~fD~Vis~~~l--~~~~d--~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +||+|++-..-  .....  ....++.+++.|+|||.++...
T Consensus       154 ~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         154 SYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             CEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            89999974321  11111  3568999999999999998864

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=1.1e-05  Score=77.23  Aligned_cols=120  Identities=18%  Similarity=0.250  Sum_probs=87.2

Q ss_pred             hhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEE
Q psy11646         12 SMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFV   88 (433)
Q Consensus        12 ~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~   88 (433)
                      +.....++.+++.+.+.+...++.+|||+-||.|.++. .|++    .+.+|+|+|+++.+++.|++++   +..+++|+
T Consensus       191 Q~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl-~La~----~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~  265 (358)
T d1uwva2         191 QVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTL-PLAT----QAASVVGVEGVPALVEKGQQNARLNGLQNVTFY  265 (358)
T ss_dssp             CSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHH-HHHT----TSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             ccchhhhhHHHHHHHHhhccCCCceEEEecccccccch-hccc----cccEEEeccCcHHHHHHHHHhHHhcccccceee
Confidence            34455677788888888877788999999999999994 4442    2359999999999999999987   55789999


Q ss_pred             EecccCCccc-ccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646         89 VANIADQNLE-SIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus        89 ~~Di~~~~l~-~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      .++.+..... ......+|+|+....=...   ..++..+.+. +|.-.++++
T Consensus       266 ~~~~~~~~~~~~~~~~~~d~vilDPPR~G~---~~~~~~l~~~-~~~~ivYVS  314 (358)
T d1uwva2         266 HENLEEDVTKQPWAKNGFDKVLLDPARAGA---AGVMQQIIKL-EPIRIVYVS  314 (358)
T ss_dssp             ECCTTSCCSSSGGGTTCCSEEEECCCTTCC---HHHHHHHHHH-CCSEEEEEE
T ss_pred             ecchhhhhhhhhhhhccCceEEeCCCCccH---HHHHHHHHHc-CCCEEEEEe
Confidence            9998764211 1234679999997765443   2355665554 566555554

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.11  E-value=4.2e-06  Score=75.21  Aligned_cols=118  Identities=10%  Similarity=0.083  Sum_probs=76.7

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhccc----CCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEE
Q psy11646         14 QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPN----LPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVV   89 (433)
Q Consensus        14 ~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~----~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~   89 (433)
                      |.+.-..++.+++..++   +.+|||||++.|..+ .+++..    ...  .+++|+|+.+.....+..  ...++++.+
T Consensus        64 k~p~d~~~~~eli~~~K---Pk~ILEIGv~~GgS~-~~~a~~l~~~~~~--~kI~giDId~~~~~~~~~--~~~~I~~i~  135 (232)
T d2bm8a1          64 KDPDTQAVYHDMLWELR---PRTIVELGVYNGGSL-AWFRDLTKIMGID--CQVIGIDRDLSRCQIPAS--DMENITLHQ  135 (232)
T ss_dssp             SCHHHHHHHHHHHHHHC---CSEEEEECCTTSHHH-HHHHHHHHHTTCC--CEEEEEESCCTTCCCCGG--GCTTEEEEE
T ss_pred             cCHHHHHHHHHHHHHhC---CCEEEEECCCCchHH-HHHHHHHHhcCCC--ceEEecCcChhhhhhhhc--cccceeeee
Confidence            34555566777887763   568999999999876 443322    233  499999998765433332  237899999


Q ss_pred             ecccCCcccc-cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         90 ANIADQNLES-IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        90 ~Di~~~~l~~-~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +|..+...-. .....+|+|+.-.. |+-......+ +...+|++||.+++.+
T Consensus       136 gDs~~~~~~~~l~~~~~dlIfID~~-H~~~~v~~~~-~~~~lLk~GG~iIveD  186 (232)
T d2bm8a1         136 GDCSDLTTFEHLREMAHPLIFIDNA-HANTFNIMKW-AVDHLLEEGDYFIIED  186 (232)
T ss_dssp             CCSSCSGGGGGGSSSCSSEEEEESS-CSSHHHHHHH-HHHHTCCTTCEEEECS
T ss_pred             cccccHHHHHHHHhcCCCEEEEcCC-cchHHHHHHH-HHhcccCcCCEEEEEc
Confidence            9976543322 33356788876544 4433222223 4678999999998865

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=3e-06  Score=77.14  Aligned_cols=94  Identities=11%  Similarity=0.176  Sum_probs=70.1

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCccc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLE   98 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~   98 (433)
                      .+++.+++.+...++..|||||||+|.+|..++. .   + .+++++|+++.+++..+++. ...+++++.+|+....+.
T Consensus         8 ~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~-~---~-~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~   82 (252)
T d1qyra_           8 FVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGE-R---L-DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFG   82 (252)
T ss_dssp             HHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHT-T---C-SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHH
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHc-c---C-CceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhccc
Confidence            4566677777778899999999999999955543 2   2 58999999999999999876 457899999999876554


Q ss_pred             cccc--CcEeEEEEcccccchh
Q psy11646         99 SIFL--AKFNKIFSFYCLHWVQ  118 (433)
Q Consensus        99 ~~~~--~~fD~Vis~~~l~~~~  118 (433)
                      +...  +.--.|+++..++-..
T Consensus        83 ~~~~~~~~~~~vvgNlPY~Iss  104 (252)
T d1qyra_          83 ELAEKMGQPLRVFGNLPYNIST  104 (252)
T ss_dssp             HHHHHHTSCEEEEEECCTTTHH
T ss_pred             ccccccCCCeEEEecchHHHHH
Confidence            3211  2223677777766543

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.08  E-value=8.1e-06  Score=76.73  Aligned_cols=113  Identities=19%  Similarity=0.287  Sum_probs=79.9

Q ss_pred             cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcE
Q psy11646         29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKF  105 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~f  105 (433)
                      +..++|.+|||++||+|.-+..+ +...... ..+++.|+++.-++..+++.   +..++.....|....+   .....|
T Consensus       112 l~~~~g~~vlD~CAapGgKt~~l-~~~~~~~-~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~---~~~~~f  186 (313)
T d1ixka_         112 LDPKPGEIVADMAAAPGGKTSYL-AQLMRND-GVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIG---ELNVEF  186 (313)
T ss_dssp             HCCCTTCEEEECCSSCSHHHHHH-HHHTTTC-SEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGG---GGCCCE
T ss_pred             ccCCccceeeecccchhhhhHhh-hhhcccc-cceeeeccCHHHHHHHHHHHHHHHhhccccccccccccc---cccccc
Confidence            45578999999999999988444 4333333 48999999999999888776   5567776666654432   223789


Q ss_pred             eEEEEcc------ccc------c---hh-------hHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        106 NKIFSFY------CLH------W---VQ-------DQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       106 D~Vis~~------~l~------~---~~-------d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      |.|++-.      ++.      |   ..       -+.+.+.+..+.|||||.++.++.+..+
T Consensus       187 D~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~  249 (313)
T d1ixka_         187 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP  249 (313)
T ss_dssp             EEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG
T ss_pred             cEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCCh
Confidence            9999722      111      0   01       1346788999999999999988766554

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=2.2e-05  Score=72.24  Aligned_cols=88  Identities=24%  Similarity=0.403  Sum_probs=69.5

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC----CCCeEEEEecccCC
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----NPKLEFVVANIADQ   95 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~----~~~i~~~~~Di~~~   95 (433)
                      .+++.+++.+...++..|||||+|+|.+|..++. .   + .+++++++++.+++..++.+.    ..+++++.+|+...
T Consensus         8 ~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~-~---~-~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~   82 (278)
T d1zq9a1           8 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLE-K---A-KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT   82 (278)
T ss_dssp             HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHH-H---S-SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred             HHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHh-c---C-CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhh
Confidence            4566777777778899999999999999966554 2   2 499999999999999998872    25899999999876


Q ss_pred             cccccccCcEeEEEEcccccch
Q psy11646         96 NLESIFLAKFNKIFSFYCLHWV  117 (433)
Q Consensus        96 ~l~~~~~~~fD~Vis~~~l~~~  117 (433)
                      .++     .++.|+++..++-.
T Consensus        83 ~~~-----~~~~vV~NLPY~Is   99 (278)
T d1zq9a1          83 DLP-----FFDTCVANLPYQIS   99 (278)
T ss_dssp             CCC-----CCSEEEEECCGGGH
T ss_pred             hhh-----hhhhhhcchHHHHH
Confidence            543     35688898887643

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=3.9e-05  Score=71.24  Aligned_cols=115  Identities=13%  Similarity=0.070  Sum_probs=77.6

Q ss_pred             cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcE
Q psy11646         29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKF  105 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~f  105 (433)
                      +...+|.+|||++||+|.-+..+ +.+.... .+++++|+++.-++.+++++   +..++.+...|...........+.|
T Consensus        90 L~~~~g~~vLD~cAapGgKt~~l-a~l~~~~-~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~f  167 (293)
T d2b9ea1          90 LDPPPGSHVIDACAAPGNKTSHL-AALLKNQ-GKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEV  167 (293)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHH-HHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTE
T ss_pred             cCCCccceEEecccchhhHHHHH-HHHhcCC-ceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccccccccee
Confidence            44578999999999999988444 4333333 49999999999999988877   5578888888876543222223679


Q ss_pred             eEEEEccccc------------ch-----------h-hHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        106 NKIFSFYCLH------------WV-----------Q-DQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       106 D~Vis~~~l~------------~~-----------~-d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      |.|+.-....            |.           . -+...+.+.. .++|||.++-++.+..+
T Consensus       168 D~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~  231 (293)
T d2b9ea1         168 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQ  231 (293)
T ss_dssp             EEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCG
T ss_pred             eEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCCh
Confidence            9999742211            00           0 1223444444 47899998888765544

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.00  E-value=7.1e-06  Score=80.49  Aligned_cols=120  Identities=18%  Similarity=0.185  Sum_probs=84.5

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCC----------CcEEEEEeCCHHHHHHHHhhc-----CCC
Q psy11646         19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKS----------VVKLVGLDVSPNMIKHAKNHH-----TNP   83 (433)
Q Consensus        19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~----------~~~v~gvDiS~~~l~~A~~~~-----~~~   83 (433)
                      +.+.+.+++.+...++.+|+|-+||+|.++..++.......          ...+.|+|+++.+...|+-+.     ...
T Consensus       148 ~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~  227 (425)
T d2okca1         148 RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD  227 (425)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSS
T ss_pred             hhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccc
Confidence            34555666667667789999999999999865544322111          025899999999999998776     223


Q ss_pred             CeEEEEecccCCcccccccCcEeEEEEcccccchh-----------------hHHHHHHHHHHhccCCCEEEEEec
Q psy11646         84 KLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ-----------------DQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus        84 ~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~-----------------d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ...+...|.....    ...+||+|+++.++....                 .....+..+.+.|++||++.+..+
T Consensus       228 ~~~i~~~d~l~~~----~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p  299 (425)
T d2okca1         228 RSPIVCEDSLEKE----PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  299 (425)
T ss_dssp             CCSEEECCTTTSC----CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cceeecCchhhhh----cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence            4556666654432    237899999998874211                 123478899999999999888764

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.00  E-value=9.4e-06  Score=72.98  Aligned_cols=103  Identities=12%  Similarity=0.075  Sum_probs=77.7

Q ss_pred             CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEE
Q psy11646         32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKI  108 (433)
Q Consensus        32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~V  108 (433)
                      ..+.+|+|||+|.|--+ ..++-..|..  +++.+|.+..-+.+.+.-.   +-.++.++...++.........++||+|
T Consensus        69 ~~~~~ilDiGSGaGfPG-i~laI~~p~~--~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v  145 (239)
T d1xdza_          69 NQVNTICDVGAGAGFPS-LPIKICFPHL--HVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIV  145 (239)
T ss_dssp             GGCCEEEEECSSSCTTH-HHHHHHCTTC--EEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             cCCCeEEeecCCCchHH-HHHHHhCCCc--cceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEE
Confidence            35779999999999888 4455455654  9999999998887766543   5578888888887643222233789999


Q ss_pred             EEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        109 FSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       109 is~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ++-.+    ......+.-...++++||.+++.-
T Consensus       146 ~sRAv----a~l~~ll~~~~~~l~~~g~~i~~K  174 (239)
T d1xdza_         146 TARAV----ARLSVLSELCLPLVKKNGLFVALK  174 (239)
T ss_dssp             EEECC----SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEhhh----hCHHHHHHHHhhhcccCCEEEEEC
Confidence            99755    346778889999999999988753

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=1.1e-05  Score=74.66  Aligned_cols=113  Identities=17%  Similarity=0.215  Sum_probs=76.8

Q ss_pred             cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcE
Q psy11646         29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKF  105 (433)
Q Consensus        29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~f  105 (433)
                      +...++.+|||+++|+|.-+..+ +.....+  .++++|+++.-++..+++.   +..++.....|...  ......+.|
T Consensus        98 L~~~~g~~vLD~CAaPGgKt~~l-a~l~~~~--~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~--~~~~~~~~f  172 (284)
T d1sqga2          98 LAPQNGEHILDLCAAPGGKTTHI-LEVAPEA--QVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYP--SQWCGEQQF  172 (284)
T ss_dssp             HCCCTTCEEEEESCTTCHHHHHH-HHHCTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCT--HHHHTTCCE
T ss_pred             cCccccceeEeccCccccchhhh-hhhhhhh--hhhhhhcchhhhhhHhhhhhcccccceeeecccccc--chhcccccc
Confidence            45578999999999999999444 4454444  8999999999998888877   33344333333221  111233689


Q ss_pred             eEEEEcc------cccch----------------hhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646        106 NKIFSFY------CLHWV----------------QDQRQAISNIYNLLMPGGEVLLLLNAFNP  146 (433)
Q Consensus       106 D~Vis~~------~l~~~----------------~d~~~~l~~i~~~LkpGG~lll~~~~~~p  146 (433)
                      |.|+.-.      ++..-                .-+...+.++.++|||||+++.++.+..+
T Consensus       173 d~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~  235 (284)
T d1sqga2         173 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP  235 (284)
T ss_dssp             EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred             cEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCch
Confidence            9999722      22100                11456788999999999999998876555

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.0001  Score=73.91  Aligned_cols=122  Identities=16%  Similarity=0.139  Sum_probs=79.1

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCC---------------CcEEEEEeCCHHHHHHHHhhc--C
Q psy11646         19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKS---------------VVKLVGLDVSPNMIKHAKNHH--T   81 (433)
Q Consensus        19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~---------------~~~v~gvDiS~~~l~~A~~~~--~   81 (433)
                      +.+...+++.+...++.+|+|-+||+|.+...+........               ...++|+|+++.+...|+-+.  .
T Consensus       150 ~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~  229 (524)
T d2ar0a1         150 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH  229 (524)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred             cchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhh
Confidence            34555666667777888999999999999855433221111               025899999999999998766  1


Q ss_pred             CC------CeEEEEecccCCcccccccCcEeEEEEcccccchh-------------h-HHHHHHHHHHhccCCCEEEEEe
Q psy11646         82 NP------KLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ-------------D-QRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        82 ~~------~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~-------------d-~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ..      +-.+...+....  ......+||+|+++.++....             + .-..+..+.+.|+|||++.++.
T Consensus       230 ~~~~~i~~~~~~~~~~~l~~--d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIl  307 (524)
T d2ar0a1         230 DIEGNLDHGGAIRLGNTLGS--DGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV  307 (524)
T ss_dssp             TCCCBGGGTBSEEESCTTSH--HHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccccchhhhhhhhhh--cccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEE
Confidence            11      111222222211  112236799999998773211             1 2347899999999999998876


Q ss_pred             c
Q psy11646        142 N  142 (433)
Q Consensus       142 ~  142 (433)
                      +
T Consensus       308 P  308 (524)
T d2ar0a1         308 P  308 (524)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.26  E-value=0.00068  Score=64.66  Aligned_cols=100  Identities=12%  Similarity=0.002  Sum_probs=71.7

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC---------------CCeEEEEecccC
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN---------------PKLEFVVANIAD   94 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~---------------~~i~~~~~Di~~   94 (433)
                      .+.+|||..||+|..+.+++... +  ..+|++.|+|+.+++.++++.   ..               ..+.+...|+..
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~-~--~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~  121 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALET-P--AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANR  121 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHS-S--CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhC-C--CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhh
Confidence            46799999999999997666543 2  248999999999999999987   11               124455555433


Q ss_pred             CcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         95 QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        95 ~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .  .......||+|..-.    ...+...+....+.++.||.+.++.
T Consensus       122 ~--~~~~~~~fDvIDiDP----fGs~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         122 L--MAERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             H--HHHSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             h--hHhhcCcCCcccCCC----CCCcHHHHHHHHHHhccCCEEEEEe
Confidence            2  111236799988754    2345667888889999999998874

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=96.93  E-value=0.0023  Score=60.29  Aligned_cols=138  Identities=16%  Similarity=0.182  Sum_probs=81.5

Q ss_pred             hhhhhhhhhcHHH---HHHHHHHHHHhcC-C---CCCCEEEEECCCCChhHHHHhccc-------------CCCCCcEEE
Q psy11646          5 TLYETNNSMQQLD---AAKLLSQYIDQFK-W---TDNESVLDVGCGPGNVTSKLLLPN-------------LPKSVVKLV   64 (433)
Q Consensus         5 ~~Y~~~~~~~~~~---~~~ll~~l~~~l~-~---~~~~~VLDIGcG~G~~~~~~l~~~-------------~~~~~~~v~   64 (433)
                      ..|.+....|+..   +..++++.+..+. .   ....+|.|+||.+|..+..++...             .+..-.+|.
T Consensus        16 ~SYa~NS~~Q~~~i~~~kp~leeai~~~~~~~~~~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf   95 (359)
T d1m6ex_          16 NSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIF   95 (359)
T ss_dssp             TTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEE
Confidence            5788888888763   4455555555542 1   123579999999999883222211             011114667


Q ss_pred             EEeCCHHHHHHHHhhcC----CCCeEEE---EecccCCcccccccCcEeEEEEcccccchh-------------------
Q psy11646         65 GLDVSPNMIKHAKNHHT----NPKLEFV---VANIADQNLESIFLAKFNKIFSFYCLHWVQ-------------------  118 (433)
Q Consensus        65 gvDiS~~~l~~A~~~~~----~~~i~~~---~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~-------------------  118 (433)
                      .-|.-..-....=+.+.    ..+--|.   -+.+-..-+   +.++.|+++|+.++||+.                   
T Consensus        96 ~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~rLf---P~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~  172 (359)
T d1m6ex_          96 LNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLF---PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTC  172 (359)
T ss_dssp             EEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSSCCS---CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSS
T ss_pred             eCCCCcchHHHHHHhccccccCCCCeEEEecCCchhhhcC---CCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCC
Confidence            77765443333322220    0111122   222222223   348999999999999962                   


Q ss_pred             --------------hHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646        119 --------------DQRQAISNIYNLLMPGGEVLLLLNAFN  145 (433)
Q Consensus       119 --------------d~~~~l~~i~~~LkpGG~lll~~~~~~  145 (433)
                                    |+...|+.=.+-|+|||+++++..+..
T Consensus       173 ~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~  213 (359)
T d1m6ex_         173 PQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRR  213 (359)
T ss_dssp             CCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeccC
Confidence                          344567777888999999999887653

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.006  Score=50.89  Aligned_cols=106  Identities=17%  Similarity=0.112  Sum_probs=70.4

Q ss_pred             HHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc-----cccc
Q psy11646         26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN-----LESI  100 (433)
Q Consensus        26 ~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~-----l~~~  100 (433)
                      +++.+.+++.+||=+|||+.......+++....  .+++++|.++.-++.|++.- ..  .+...+-++..     +...
T Consensus        19 ~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~--~~Vi~~d~~~~rl~~a~~~G-a~--~~~~~~~~~~~~~~~~~~~~   93 (171)
T d1pl8a2          19 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGA--AQVVVTDLSATRLSKAKEIG-AD--LVLQISKESPQEIARKVEGQ   93 (171)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTT-CS--EEEECSSCCHHHHHHHHHHH
T ss_pred             HHHhCCCCCCEEEEECCCccHHHHHHHHHHcCC--ceEEeccCCHHHHHHHHHhC-Cc--cccccccccccccccccccc
Confidence            455667899999999998877665555555432  48999999999999998752 11  12221111100     0011


Q ss_pred             ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646        101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ....+|+|+-.-.-      ...+....+++++||++++...
T Consensus        94 ~g~g~Dvvid~~G~------~~~~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          94 LGCKPEVTIECTGA------EASIQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             HTSCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCCCceEEEeccCC------chhHHHHHHHhcCCCEEEEEec
Confidence            22568998875542      4467888999999999988654

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.81  E-value=0.0014  Score=61.18  Aligned_cols=59  Identities=17%  Similarity=0.183  Sum_probs=48.6

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccC
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD   94 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~   94 (433)
                      .+..|||||+|.|.+|..++....+   .+++++|+++...+..++++...++.++.+|+..
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~---~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~  101 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCP---RQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD  101 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCC---SEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCC---CEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence            5778999999999999666643322   3899999999999999998866789999998754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.53  E-value=0.00072  Score=58.43  Aligned_cols=109  Identities=14%  Similarity=0.106  Sum_probs=70.8

Q ss_pred             HHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc-----c
Q psy11646         26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES-----I  100 (433)
Q Consensus        26 ~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~-----~  100 (433)
                      ++....++|.+||-+|||........+++....  .+++++|.++..++.|++.-    ..... +-....+.+     .
T Consensus        18 ~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga--~~Vi~~d~~~~rl~~a~~~G----a~~~~-~~~~~~~~~~i~~~t   90 (195)
T d1kola2          18 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGA--AVVIVGDLNPARLAHAKAQG----FEIAD-LSLDTPLHEQIAALL   90 (195)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTT----CEEEE-TTSSSCHHHHHHHHH
T ss_pred             HHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcc--cceeeecccchhhHhhhhcc----ccEEE-eCCCcCHHHHHHHHh
Confidence            345567899999999999855443444444333  49999999999999998862    22222 221211211     1


Q ss_pred             ccCcEeEEEEcccc------cch---hhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        101 FLAKFNKIFSFYCL------HWV---QDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       101 ~~~~fD~Vis~~~l------~~~---~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ....+|+++-.-..      ++.   ......++...+.++|||++.+..
T Consensus        91 ~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G  140 (195)
T d1kola2          91 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  140 (195)
T ss_dssp             SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             CCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence            12468999964331      111   124568999999999999998874

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.38  E-value=0.0016  Score=54.85  Aligned_cols=105  Identities=14%  Similarity=0.091  Sum_probs=69.8

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc----c
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE----S   99 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~----~   99 (433)
                      .+.+..+.+++.+||=+|||.-......+++....  .+++++|.++.-++.|++.-   -.+++.  ..+....    .
T Consensus        19 a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~--~~v~~~~~~~~k~~~a~~~G---a~~~i~--~~~~~~~~~i~~   91 (174)
T d1f8fa2          19 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGA--SIIIAVDIVESRLELAKQLG---ATHVIN--SKTQDPVAAIKE   91 (174)
T ss_dssp             HHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTC--SEEEEEESCHHHHHHHHHHT---CSEEEE--TTTSCHHHHHHH
T ss_pred             HHHHhhCCCCCCEEEEeCCCHHHhhhhhccccccc--ceeeeeccHHHHHHHHHHcC---CeEEEe--CCCcCHHHHHHH
Confidence            34555667899999999998765554445544333  48899999999999998762   223332  2221111    1


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      ..++.+|+|+-.-.      ....++...++++|+|++++..
T Consensus        92 ~t~gg~D~vid~~G------~~~~~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2          92 ITDGGVNFALESTG------SPEILKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             HTTSCEEEEEECSC------CHHHHHHHHHTEEEEEEEEECC
T ss_pred             HcCCCCcEEEEcCC------cHHHHHHHHhcccCceEEEEEe
Confidence            12367999986544      2446778899999999998764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.33  E-value=0.0026  Score=53.22  Aligned_cols=103  Identities=12%  Similarity=0.137  Sum_probs=63.9

Q ss_pred             HhcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcE
Q psy11646         27 DQFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKF  105 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~f  105 (433)
                      .+...+++.+||-+|+|. |..+ ..+++..  + .+++++|.+++.++.|++.- ..  .++.. .++........+.|
T Consensus        21 ~~~~~~~g~~vlI~GaG~vG~~a-~q~ak~~--G-~~vi~~~~~~~k~~~a~~lG-a~--~~i~~-~~~~~~~~~~~~~~   92 (168)
T d1piwa2          21 VRNGCGPGKKVGIVGLGGIGSMG-TLISKAM--G-AETYVISRSSRKREDAMKMG-AD--HYIAT-LEEGDWGEKYFDTF   92 (168)
T ss_dssp             HHTTCSTTCEEEEECCSHHHHHH-HHHHHHH--T-CEEEEEESSSTTHHHHHHHT-CS--EEEEG-GGTSCHHHHSCSCE
T ss_pred             HHhCcCCCCEEEEECCCCcchhH-HHHhhhc--c-ccccccccchhHHHHhhccC-Cc--EEeec-cchHHHHHhhhccc
Confidence            345668999999999984 3444 3333332  3 58999999999999998862 11  22221 11111222234679


Q ss_pred             eEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        106 NKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       106 D~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |.|+..-.-.+-    ..+....++|+|+|++++..
T Consensus        93 d~vi~~~~~~~~----~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          93 DLIVVCASSLTD----IDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             EEEEECCSCSTT----CCTTTGGGGEEEEEEEEECC
T ss_pred             ceEEEEecCCcc----chHHHHHHHhhccceEEEec
Confidence            998875432221    12345678999999998864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.32  E-value=0.018  Score=47.62  Aligned_cols=106  Identities=21%  Similarity=0.178  Sum_probs=67.8

Q ss_pred             HHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcc-------c
Q psy11646         26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL-------E   98 (433)
Q Consensus        26 ~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l-------~   98 (433)
                      +++...+++.+||=+|||+-......+++..  + .+++++|.++.-++.|++..  .... ...+-.....       .
T Consensus        19 ~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~--G-a~vi~v~~~~~r~~~a~~~g--a~~~-~~~~~~~~~~~~~~~~~~   92 (170)
T d1e3ja2          19 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAY--G-AFVVCTARSPRRLEVAKNCG--ADVT-LVVDPAKEEESSIIERIR   92 (170)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHT--T-CEEEEEESCHHHHHHHHHTT--CSEE-EECCTTTSCHHHHHHHHH
T ss_pred             HHHhCCCCCCEEEEEcccccchhhHhhHhhh--c-ccccccchHHHHHHHHHHcC--CcEE-Eeccccccccchhhhhhh
Confidence            4556678999999999985444334444443  3 58999999999999999863  1112 2222111111       1


Q ss_pred             ccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA  143 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~  143 (433)
                      ......+|+|+-.-.      ....+....++++|+|++++....
T Consensus        93 ~~~g~g~D~vid~~g------~~~~~~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2          93 SAIGDLPNVTIDCSG------NEKCITIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             HHSSSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             cccccCCceeeecCC------ChHHHHHHHHHHhcCCceEEEecC
Confidence            111356898886543      235677888999999999886543

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0039  Score=52.29  Aligned_cols=99  Identities=20%  Similarity=0.208  Sum_probs=63.4

Q ss_pred             HHhcCCCCCCEEEEECCC--CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc----
Q psy11646         26 IDQFKWTDNESVLDVGCG--PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES----   99 (433)
Q Consensus        26 ~~~l~~~~~~~VLDIGcG--~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~----   99 (433)
                      .+..+.+++.+||-.|++  .|..+..++ +..  + .++++++.+++..+.+++.- ..  .+  .|..+..+.+    
T Consensus        21 ~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a-~~~--G-~~vi~~~~~~~~~~~~~~~G-a~--~v--i~~~~~~~~~~i~~   91 (174)
T d1yb5a2          21 IHSACVKAGESVLVHGASGGVGLAACQIA-RAY--G-LKILGTAGTEEGQKIVLQNG-AH--EV--FNHREVNYIDKIKK   91 (174)
T ss_dssp             HTTSCCCTTCEEEEETCSSHHHHHHHHHH-HHT--T-CEEEEEESSHHHHHHHHHTT-CS--EE--EETTSTTHHHHHHH
T ss_pred             HHHhCCCCCCEEEEEeccccccccccccc-ccc--C-cccccccccccccccccccC-cc--cc--cccccccHHHHhhh
Confidence            344566799999999972  334443333 332  3 58999999999889888752 11  22  2333322221    


Q ss_pred             -cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        100 -IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       100 -~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                       .....+|+|+....       ...+.+..++|+|+|+++..
T Consensus        92 ~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          92 YVGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             HHCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEEC
T ss_pred             hhccCCceEEeeccc-------HHHHHHHHhccCCCCEEEEE
Confidence             12356999997543       23577788999999998875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.56  E-value=0.0041  Score=52.34  Aligned_cols=102  Identities=15%  Similarity=0.170  Sum_probs=66.1

Q ss_pred             HHhcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc----c
Q psy11646         26 IDQFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES----I  100 (433)
Q Consensus        26 ~~~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~----~  100 (433)
                      ++....+++.+||=+|||. |..+ ..+++...  ..+|+++|.++.-++.|++.-   -.+++  |..+....+    .
T Consensus        20 ~~~a~~~~g~~VlI~GaG~vGl~~-~q~ak~~G--a~~Vi~~d~~~~r~~~a~~lG---a~~~i--~~~~~~~~~~v~~~   91 (174)
T d1jqba2          20 AELADIEMGSSVVVIGIGAVGLMG-IAGAKLRG--AGRIIGVGSRPICVEAAKFYG---ATDIL--NYKNGHIEDQVMKL   91 (174)
T ss_dssp             HHHTTCCTTCCEEEECCSHHHHHH-HHHHHTTT--CSCEEEECCCHHHHHHHHHHT---CSEEE--CGGGSCHHHHHHHH
T ss_pred             HHHhCCCCCCEEEEEcCCcchhhh-hhhhhccc--ccccccccchhhhHHHHHhhC---ccccc--cccchhHHHHHHHH
Confidence            3555678999999999987 5555 33444432  247999999999999998752   11222  222221111    1


Q ss_pred             -ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        101 -FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       101 -~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                       ....+|+|+-.-.-      ...+.+..++++|+|++++..
T Consensus        92 t~g~G~D~vid~~g~------~~~~~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          92 TNGKGVDRVIMAGGG------SETLSQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             TTTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECC
T ss_pred             hhccCcceEEEccCC------HHHHHHHHHHHhcCCEEEEEe
Confidence             12459999876542      235677789999999998864

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.51  E-value=0.043  Score=45.78  Aligned_cols=107  Identities=11%  Similarity=0.109  Sum_probs=68.9

Q ss_pred             HHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc----cc
Q psy11646         25 YIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE----SI  100 (433)
Q Consensus        25 l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~----~~  100 (433)
                      +.+..+.++|.+||=+|||.-......+++....  ..++.+|.++.-++.|++.-   ...++...-.+....    ..
T Consensus        20 ~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga--~~Vi~~d~~~~r~~~a~~~G---a~~~i~~~~~~~~~~~~~~~~   94 (174)
T d1e3ia2          20 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGA--SRIIAIDINGEKFPKAKALG---ATDCLNPRELDKPVQDVITEL   94 (174)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEECSCGGGHHHHHHTT---CSEEECGGGCSSCHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCC--ceeeeeccchHHHHHHHHhC---CCcccCCccchhhhhhhHhhh
Confidence            3455667899999999999844433445555433  48999999999999999862   122221111111111    11


Q ss_pred             ccCcEeEEEEcccccchhhHHHHHHHHHHhccCC-CEEEEEec
Q psy11646        101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPG-GEVLLLLN  142 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpG-G~lll~~~  142 (433)
                      ..+.+|+|+-.-.      ...++.+..+.+++| |++++...
T Consensus        95 ~~~G~d~vie~~G------~~~~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2          95 TAGGVDYSLDCAG------TAQTLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             HTSCBSEEEESSC------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             hcCCCcEEEEecc------cchHHHHHHHHhhcCCeEEEecCC
Confidence            2366899987544      245788889999996 99988643

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.39  E-value=0.044  Score=44.90  Aligned_cols=101  Identities=17%  Similarity=0.171  Sum_probs=64.1

Q ss_pred             HhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc----cccc
Q psy11646         27 DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE----SIFL  102 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~----~~~~  102 (433)
                      .....+|+.+||=.|+|+-......+++..  + .+++++|.++.-++.+++.-    ..... +..+....    ....
T Consensus        21 ~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~--g-~~v~~~~~~~~r~~~~k~~G----a~~~~-~~~~~~~~~~~~~~~~   92 (168)
T d1rjwa2          21 KVTGAKPGEWVAIYGIGGLGHVAVQYAKAM--G-LNVVAVDIGDEKLELAKELG----ADLVV-NPLKEDAAKFMKEKVG   92 (168)
T ss_dssp             HHHTCCTTCEEEEECCSTTHHHHHHHHHHT--T-CEEEEECSCHHHHHHHHHTT----CSEEE-CTTTSCHHHHHHHHHS
T ss_pred             HHhCCCCCCEEEEeecccchhhhhHHHhcC--C-CeEeccCCCHHHhhhhhhcC----cceec-ccccchhhhhcccccC
Confidence            345568999999999988776644444432  2 58999999999999998852    22222 22221111    1112


Q ss_pred             CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646        103 AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      +.+|.|+....       ...+....+.|+|+|.+++...
T Consensus        93 ~~~~~v~~~~~-------~~~~~~a~~~l~~~G~i~~~g~  125 (168)
T d1rjwa2          93 GVHAAVVTAVS-------KPAFQSAYNSIRRGGACVLVGL  125 (168)
T ss_dssp             SEEEEEESSCC-------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCceEEeecCC-------HHHHHHHHHHhccCCceEeccc
Confidence            44454443221       3567888999999999988643

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.34  E-value=0.0049  Score=51.32  Aligned_cols=102  Identities=16%  Similarity=0.223  Sum_probs=64.4

Q ss_pred             HHhcCCCCCCEEEEECC-C-CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc----
Q psy11646         26 IDQFKWTDNESVLDVGC-G-PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES----   99 (433)
Q Consensus        26 ~~~l~~~~~~~VLDIGc-G-~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~----   99 (433)
                      +.+.+.+++.+||=+|| | .|..+..+++ ..  +..+|+++|.++.-++.+++.- .  ..++  +.......+    
T Consensus        20 l~~~~~~~g~~vlV~G~~G~vG~~~~~~~~-~~--g~~~V~~~~~~~~~~~~~~~~G-a--~~~i--~~~~~~~~~~~~~   91 (170)
T d1jvba2          20 VRKASLDPTKTLLVVGAGGGLGTMAVQIAK-AV--SGATIIGVDVREEAVEAAKRAG-A--DYVI--NASMQDPLAEIRR   91 (170)
T ss_dssp             HHHTTCCTTCEEEEETTTSHHHHHHHHHHH-HH--TCCEEEEEESSHHHHHHHHHHT-C--SEEE--ETTTSCHHHHHHH
T ss_pred             HHHhCCCCCCEEEEEeccccceeeeeeccc-cc--ccccccccccchhhHHHHHHcC-C--ceee--ccCCcCHHHHHHH
Confidence            34566789999999997 3 3333433333 22  2258999999999999998762 1  1222  222211111    


Q ss_pred             -cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        100 -IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       100 -~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                       ...+.||+|+-...      -...++...+.++|||++++..
T Consensus        92 ~~~~~~~d~vid~~g------~~~~~~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          92 ITESKGVDAVIDLNN------SEKTLSVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             HTTTSCEEEEEESCC------CHHHHTTGGGGEEEEEEEEECC
T ss_pred             Hhhcccchhhhcccc------cchHHHhhhhhcccCCEEEEec
Confidence             12356999987554      2345667789999999998764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.34  E-value=0.0084  Score=49.63  Aligned_cols=100  Identities=12%  Similarity=0.088  Sum_probs=62.8

Q ss_pred             HhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc----ccc
Q psy11646         27 DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES----IFL  102 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~----~~~  102 (433)
                      ++...+++.+||=+|+|.-......+++..  + .+++++|.++.-++.+++.-   ...++  |..+....+    ...
T Consensus        21 ~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~--G-~~Vi~~~~~~~~~~~a~~~G---a~~~i--~~~~~~~~~~~~~~~~   92 (166)
T d1llua2          21 KQTNARPGQWVAISGIGGLGHVAVQYARAM--G-LHVAAIDIDDAKLELARKLG---ASLTV--NARQEDPVEAIQRDIG   92 (166)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHT--T-CEEEEEESCHHHHHHHHHTT---CSEEE--ETTTSCHHHHHHHHHS
T ss_pred             HHhCCCCCCEEEEeeccccHHHHHHHHHHc--C-CccceecchhhHHHhhhccC---ccccc--cccchhHHHHHHHhhc
Confidence            445668999999999986555434455443  3 59999999999999998752   12222  222221111    112


Q ss_pred             CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        103 AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +.++.|++...       ...+....+.|+|||++++..
T Consensus        93 g~~~~i~~~~~-------~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          93 GAHGVLVTAVS-------NSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             SEEEEEECCSC-------HHHHHHHHTTEEEEEEEEECC
T ss_pred             CCccccccccc-------chHHHHHHHHhcCCcEEEEEE
Confidence            33444443332       346778889999999988764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.01  E-value=0.016  Score=48.65  Aligned_cols=105  Identities=10%  Similarity=0.104  Sum_probs=64.1

Q ss_pred             HHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc-cc---c-
Q psy11646         25 YIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN-LE---S-   99 (433)
Q Consensus        25 l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~-l~---~-   99 (433)
                      +.+..+.+++.+||=+|||........+++....  .+|+++|.+++-++.|++.-.   ..++. .-+... ..   . 
T Consensus        21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~--~~Vi~vd~~~~kl~~Ak~~GA---~~~in-~~~~~~~~~~~~~~   94 (176)
T d1d1ta2          21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGA--SRIIGIDLNKDKFEKAMAVGA---TECIS-PKDSTKPISEVLSE   94 (176)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEECSCGGGHHHHHHHTC---SEEEC-GGGCSSCHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCC--ceEEEecCcHHHHHHHHhcCC---cEEEC-ccccchHHHHHHHH
Confidence            3455567899999999999877664455544332  499999999999999999741   12221 111111 11   0 


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHH-hccCCCEEEEEe
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYN-LLMPGGEVLLLL  141 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~-~LkpGG~lll~~  141 (433)
                      .....+|.|+-.-.-      ...+.+... +++++|++++..
T Consensus        95 ~~g~G~d~vi~~~g~------~~~~~~a~~~~~~~~G~~v~vG  131 (176)
T d1d1ta2          95 MTGNNVGYTFEVIGH------LETMIDALASCHMNYGTSVVVG  131 (176)
T ss_dssp             HHTSCCCEEEECSCC------HHHHHHHHTTSCTTTCEEEECS
T ss_pred             hccccceEEEEeCCc------hHHHHHHHHHhhcCCeEEEEEE
Confidence            123568888765442      223344444 445668888764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.98  E-value=0.009  Score=50.32  Aligned_cols=101  Identities=19%  Similarity=0.119  Sum_probs=63.5

Q ss_pred             HhcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc-------
Q psy11646         27 DQFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE-------   98 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~-------   98 (433)
                      +....++|.+||-+|+|+ |..+ ..+++..  +..+|+++|.++..++.|++.- .  ..+  .+..+....       
T Consensus        22 ~~~~~~~G~~VlV~GaG~iG~~~-~~~ak~~--Ga~~Vi~~~~~~~~~~~a~~lG-a--~~v--i~~~~~~~~~~~~~i~   93 (182)
T d1vj0a2          22 EYPESFAGKTVVIQGAGPLGLFG-VVIARSL--GAENVIVIAGSPNRLKLAEEIG-A--DLT--LNRRETSVEERRKAIM   93 (182)
T ss_dssp             TCSSCCBTCEEEEECCSHHHHHH-HHHHHHT--TBSEEEEEESCHHHHHHHHHTT-C--SEE--EETTTSCHHHHHHHHH
T ss_pred             HHhCCCCCCEEEEECCCccchhh-eeccccc--cccccccccccccccccccccc-c--eEE--EeccccchHHHHHHHH
Confidence            334567899999999874 4444 3333333  3238999999999999998752 1  111  233222111       


Q ss_pred             c-cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646         99 S-IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus        99 ~-~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      + .....+|+|+-.-.-      ...++...+.|+|||++++..
T Consensus        94 ~~~~~~g~Dvvid~vG~------~~~~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2          94 DITHGRGADFILEATGD------SRALLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             HHTTTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECC
T ss_pred             HhhCCCCceEEeecCCc------hhHHHHHHHHhcCCCEEEEEe
Confidence            1 112459999865432      235677889999999988764

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.97  E-value=0.07  Score=44.31  Aligned_cols=106  Identities=10%  Similarity=0.028  Sum_probs=65.7

Q ss_pred             HHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc----c
Q psy11646         25 YIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES----I  100 (433)
Q Consensus        25 l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~----~  100 (433)
                      +.+....+++.+||=+|||........+++....  .+|+++|.+++-++.|++.-   ...++...-.+.....    .
T Consensus        19 ~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~--~~Vi~~d~~~~kl~~a~~lG---a~~~i~~~~~d~~~~~~~~~~   93 (174)
T d1p0fa2          19 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGA--SRIIGVGTHKDKFPKAIELG---ATECLNPKDYDKPIYEVICEK   93 (174)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTC--SEEEEECSCGGGHHHHHHTT---CSEEECGGGCSSCHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCC--ceeeccCChHHHHHHHHHcC---CcEEEcCCCchhHHHHHHHHh
Confidence            3455667899999999999877664445544333  48999999999999998862   1222211111111111    1


Q ss_pred             ccCcEeEEEEcccccchhhHHHHHHHHHHhccC-CCEEEEEe
Q psy11646        101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMP-GGEVLLLL  141 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~Lkp-GG~lll~~  141 (433)
                      ..+.+|+|+-.-.-      ...+.+....+++ +|.+++..
T Consensus        94 ~~~G~d~vid~~g~------~~~~~~~~~~~~~~~G~~v~vG  129 (174)
T d1p0fa2          94 TNGGVDYAVECAGR------IETMMNALQSTYCGSGVTVVLG  129 (174)
T ss_dssp             TTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             cCCCCcEEEEcCCC------chHHHHHHHHHHHhcCceEEEE
Confidence            22568888865442      3455666666655 68888764

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.88  E-value=0.011  Score=49.21  Aligned_cols=99  Identities=17%  Similarity=0.126  Sum_probs=65.3

Q ss_pred             CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc----cccCcEe
Q psy11646         31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES----IFLAKFN  106 (433)
Q Consensus        31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~----~~~~~fD  106 (433)
                      .+|+.+||=+|+|........+++....  ..++++|.++.-++.+++..   ..+++  +..+.....    .....+|
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~--~~vv~~~~~~~k~~~~~~~g---a~~~i--~~~~~~~~~~~~~~~~~g~d  102 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTP--ATVIALDVKEEKLKLAERLG---ADHVV--DARRDPVKQVMELTRGRGVN  102 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCC--CEEEEEESSHHHHHHHHHTT---CSEEE--ETTSCHHHHHHHHTTTCCEE
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcC--cccccccchhHHHHHHhhcc---cceee--cCcccHHHHHHHhhCCCCce
Confidence            4789999999998776653444443332  48999999999999998863   22332  222221111    1124589


Q ss_pred             EEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646        107 KIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       107 ~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      +|+-.-.-      ...+....+.+++||++++...
T Consensus       103 ~vid~~g~------~~~~~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         103 VAMDFVGS------QATVDYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             EEEESSCC------HHHHHHGGGGEEEEEEEEECCC
T ss_pred             EEEEecCc------chHHHHHHHHHhCCCEEEEEeC
Confidence            98876552      3457788899999999998643

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=94.80  E-value=0.027  Score=51.09  Aligned_cols=55  Identities=16%  Similarity=0.215  Sum_probs=44.0

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH   80 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~   80 (433)
                      .+++++++... ++|+.|||.=||+|+.+.++..  +  + -+.+|+|++++.++.|++|+
T Consensus       238 ~L~~rlI~~~s-~~gdiVlDpF~GSGTT~~AA~~--l--g-R~~Ig~El~~~y~~~a~~Rl  292 (320)
T d1booa_         238 KLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAER--E--S-RKWISFEMKPEYVAASAFRF  292 (320)
T ss_dssp             HHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHH--T--T-CEEEEEESCHHHHHHHHGGG
T ss_pred             HHHHHhhhhcc-cCCCEEEecCCCCcHHHHHHHH--c--C-CcEEEEeCCHHHHHHHHHHH
Confidence            56777776654 6899999999999998844333  1  2 48999999999999999987

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=94.07  E-value=0.052  Score=47.45  Aligned_cols=55  Identities=22%  Similarity=0.283  Sum_probs=43.6

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH   80 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~   80 (433)
                      .+++.+++... .+|+.|||.=||+|+.+.+...  . .  -+.+|+|++++.++.|++|+
T Consensus       200 ~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~--~-~--R~~ig~El~~~y~~~a~~Rl  254 (256)
T d1g60a_         200 DLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKK--L-G--RNFIGCDMNAEYVNQANFVL  254 (256)
T ss_dssp             HHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHH--T-T--CEEEEEESCHHHHHHHHHHH
T ss_pred             hHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHH--c-C--CeEEEEeCCHHHHHHHHHHH
Confidence            56777777664 6799999999999998833332  1 1  48999999999999999875

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.66  E-value=0.027  Score=47.59  Aligned_cols=95  Identities=24%  Similarity=0.237  Sum_probs=66.8

Q ss_pred             cCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCC
Q psy11646        175 TGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRN  254 (433)
Q Consensus       175 ~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~  254 (433)
                      +++.++++.+.+   ..++...++...+|.|+.|.......+.+.+.-  ......+|+.+..+|++||.+++..|.+.+
T Consensus        62 ~~~~~~~~~f~~---~~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re--~~~~~~~L~~~~~~lk~gg~~~ii~fhs~E  136 (182)
T d1wg8a2          62 PGLTVVQGNFRH---LKRHLAALGVERVDGILADLGVSSFHLDDPSDE--LNALKEFLEQAAEVLAPGGRLVVIAFHSLE  136 (182)
T ss_dssp             TTEEEEESCGGG---HHHHHHHTTCSCEEEEEEECSCCHHHHHCGGTH--HHHHHHHHHHHHHHEEEEEEEEEEECSHHH
T ss_pred             cceeEeehHHHH---HHHHHHHcCCCccCEEEEEccCCHHHhhcchHH--HHHHHHHHHHHHhhhCCCCeEEEEecccch
Confidence            356666766554   566677777889999999997766655444333  344556899999999999999999999887


Q ss_pred             HHHHHHHHhcccceeEEecC
Q psy11646        255 VVCLETKFQIFFENVSIAKP  274 (433)
Q Consensus       255 ~~~~~~~l~~~F~~v~~~KP  274 (433)
                      ...+...++....+....||
T Consensus       137 d~ivk~~~~e~~~k~i~kK~  156 (182)
T d1wg8a2         137 DRVVKRFLRESGLKVLTKKP  156 (182)
T ss_dssp             HHHHHHHHHHHCSEESCSSC
T ss_pred             hHHHHHHHhhccceeccCCC
Confidence            65555555554444444444

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.64  E-value=0.38  Score=38.87  Aligned_cols=90  Identities=16%  Similarity=0.103  Sum_probs=54.8

Q ss_pred             CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcccc
Q psy11646         35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCL  114 (433)
Q Consensus        35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l  114 (433)
                      ++|.=||+|.  .+..++..+...+ .+|++.|.+++.++.|++.-   .+.....+++.       -...|+|+..-..
T Consensus         1 MkI~iIG~G~--mG~~lA~~l~~~g-~~V~~~d~~~~~~~~a~~~~---~~~~~~~~~~~-------~~~~DiIilavp~   67 (165)
T d2f1ka2           1 MKIGVVGLGL--IGASLAGDLRRRG-HYLIGVSRQQSTCEKAVERQ---LVDEAGQDLSL-------LQTAKIIFLCTPI   67 (165)
T ss_dssp             CEEEEECCSH--HHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHTT---SCSEEESCGGG-------GTTCSEEEECSCH
T ss_pred             CEEEEEeecH--HHHHHHHHHHHCC-CEEEEEECCchHHHHHHHhh---ccceeeeeccc-------ccccccccccCcH
Confidence            3577787764  3322222222233 69999999999999888763   11111112211       1467999875543


Q ss_pred             cchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        115 HWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       115 ~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                         ...+.+++++...++++-.++-.
T Consensus        68 ---~~~~~vl~~l~~~l~~~~iv~~~   90 (165)
T d2f1ka2          68 ---QLILPTLEKLIPHLSPTAIVTDV   90 (165)
T ss_dssp             ---HHHHHHHHHHGGGSCTTCEEEEC
T ss_pred             ---hhhhhhhhhhhhhcccccceeec
Confidence               34567889999999888765543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.55  E-value=0.26  Score=40.44  Aligned_cols=104  Identities=11%  Similarity=0.103  Sum_probs=64.8

Q ss_pred             HHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEe-cccCCccc----c
Q psy11646         25 YIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVA-NIADQNLE----S   99 (433)
Q Consensus        25 l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~-Di~~~~l~----~   99 (433)
                      +.+..+.++|++||=+|+|.+..+...+++...  +.+|+++|.+++-.+.+++.-   ....+.. +-.+ ...    .
T Consensus        20 l~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g--~~~Vi~~~~~~~k~~~a~~~G---a~~~i~~~~~~~-~~~~~~~~   93 (176)
T d2jhfa2          20 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAG--AARIIGVDINKDKFAKAKEVG---ATECVNPQDYKK-PIQEVLTE   93 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHHTT---CSEEECGGGCSS-CHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcC--CceEEeecCcHHHHHHHHHhC---CeeEEecCCchh-HHHHHHHH
Confidence            345556789999999999876655444444433  359999999999999998873   1122111 1111 111    1


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCC-EEEEE
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGG-EVLLL  140 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG-~lll~  140 (433)
                      ...+.+|+|+-.....      ..++.....+++|| .+++.
T Consensus        94 ~~~~G~D~vid~~G~~------~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2          94 MSNGGVDFSFEVIGRL------DTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             HTTSCBSEEEECSCCH------HHHHHHHHHBCTTTCEEEEC
T ss_pred             HhcCCCCEEEecCCch------hHHHHHHHHHhcCCcceEEe
Confidence            1235789998866543      34566677888864 54443

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.45  E-value=0.22  Score=40.80  Aligned_cols=105  Identities=10%  Similarity=0.105  Sum_probs=65.0

Q ss_pred             HHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc----ccc
Q psy11646         26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE----SIF  101 (433)
Q Consensus        26 ~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~----~~~  101 (433)
                      .+..+.+||.+||=.|||........+++...  ...|+++|.++.-++.+++.-   ...++...-......    ...
T Consensus        21 ~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G--~~~vi~~~~~~~k~~~ak~lG---a~~~i~~~~~~~~~~~~~~~~~   95 (176)
T d2fzwa2          21 VNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAG--ASRIIGVDINKDKFARAKEFG---ATECINPQDFSKPIQEVLIEMT   95 (176)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECSCGGGHHHHHHHT---CSEEECGGGCSSCHHHHHHHHT
T ss_pred             HHhhCCCCCCEEEEecchhHHHHHHHHHHHHh--cCceEEEcccHHHHHHHHHhC---CcEEEeCCchhhHHHHHHHHHc
Confidence            44556789999999999844433233333332  248999999999999998763   112221111111111    112


Q ss_pred             cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        102 LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       102 ~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .+.+|+|+-.-.-      ..+++....++++||.+++..
T Consensus        96 ~~g~D~vid~~G~------~~~~~~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2          96 DGGVDYSFECIGN------VKVMRAALEACHKGWGVSVVV  129 (176)
T ss_dssp             TSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCCcEeeecCCC------HHHHHHHHHhhcCCceeEEEE
Confidence            3568999886542      346778889999998776653

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=93.37  E-value=0.036  Score=49.09  Aligned_cols=77  Identities=13%  Similarity=0.141  Sum_probs=53.9

Q ss_pred             CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-----C-------CCCeEEEEecccCCcccccc
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-----T-------NPKLEFVVANIADQNLESIF  101 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-----~-------~~~i~~~~~Di~~~~l~~~~  101 (433)
                      ..+|||.-||.|..+ ..++..   + .+|+++|.++.+....+..+     .       ..+++++.+|..+. +.. .
T Consensus        89 ~~~VlD~TaGlG~Da-~vlA~~---G-~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~-L~~-~  161 (250)
T d2oyra1          89 LPDVVDATAGLGRDA-FVLASV---G-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA-LTD-I  161 (250)
T ss_dssp             CCCEEETTCTTCHHH-HHHHHH---T-CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH-STT-C
T ss_pred             CCEEEECCCcccHHH-HHHHhC---C-CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHH-Hhc-c
Confidence            348999999999999 445533   2 58999999997765544332     1       13789999997553 221 2


Q ss_pred             cCcEeEEEEcccccch
Q psy11646        102 LAKFNKIFSFYCLHWV  117 (433)
Q Consensus       102 ~~~fD~Vis~~~l~~~  117 (433)
                      .++||+|+.-.++.+-
T Consensus       162 ~~~~DvIYlDPMFp~~  177 (250)
T d2oyra1         162 TPRPQVVYLDPMFPHK  177 (250)
T ss_dssp             SSCCSEEEECCCCCCC
T ss_pred             CCCCCEEEECCCCccc
Confidence            3679999997777544

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=92.81  E-value=0.39  Score=44.55  Aligned_cols=88  Identities=8%  Similarity=0.087  Sum_probs=56.4

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCC----CCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCccc
Q psy11646         24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPK----SVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLE   98 (433)
Q Consensus        24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~----~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~   98 (433)
                      .+...+..++..+|+|+|+|+|.++..++......    ...+++.+|.|+.+.+.-++++ ...++++. .+++..  +
T Consensus        70 ~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~~~i~w~-~~~~~~--~  146 (365)
T d1zkda1          70 SVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWH-DSFEDV--P  146 (365)
T ss_dssp             HHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEE-SSGGGS--C
T ss_pred             HHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcccccceec-cChhhc--c
Confidence            33444554456789999999999986665532111    1257999999999888777776 33455543 344332  1


Q ss_pred             ccccCcEeEEEEcccccchh
Q psy11646         99 SIFLAKFNKIFSFYCLHWVQ  118 (433)
Q Consensus        99 ~~~~~~fD~Vis~~~l~~~~  118 (433)
                          ...-+|+++..+..++
T Consensus       147 ----~~~g~iiaNE~fDAlP  162 (365)
T d1zkda1         147 ----EGPAVILANEYFDVLP  162 (365)
T ss_dssp             ----CSSEEEEEESSGGGSC
T ss_pred             ----cCCeEEEecccCcccc
Confidence                1225788888877664

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=92.61  E-value=0.44  Score=38.82  Aligned_cols=104  Identities=13%  Similarity=0.137  Sum_probs=63.5

Q ss_pred             HHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc----c
Q psy11646         25 YIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES----I  100 (433)
Q Consensus        25 l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~----~  100 (433)
                      +.+..+.+++.+||=+|+|.+......+++....  ..|+++|.+++-++.|++.-   -.+++...-++.....    .
T Consensus        20 ~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~--~~Vi~~~~~~~rl~~a~~~G---Ad~~in~~~~~~~~~~~~~~~   94 (175)
T d1cdoa2          20 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGA--KRIIAVDLNPDKFEKAKVFG---ATDFVNPNDHSEPISQVLSKM   94 (175)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEECSCGGGHHHHHHTT---CCEEECGGGCSSCHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEEecCCccchHHHHHHHHhh--chheeecchHHHHHHHHHcC---CcEEEcCCCcchhHHHHHHhh
Confidence            3455567899999999999977664545444333  48999999999999999862   1222211111111111    1


Q ss_pred             ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEE
Q psy11646        101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL  139 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll  139 (433)
                      ....+|+|+-.-.-      ..++.....++++||..++
T Consensus        95 ~~~G~d~vid~~G~------~~~~~~a~~~~~~g~~~~~  127 (175)
T d1cdoa2          95 TNGGVDFSLECVGN------VGVMRNALESCLKGWGVSV  127 (175)
T ss_dssp             HTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEE
T ss_pred             ccCCcceeeeecCC------HHHHHHHHHHhhCCCccee
Confidence            12568988775542      3456666777777654443

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.45  E-value=0.089  Score=46.52  Aligned_cols=55  Identities=13%  Similarity=0.221  Sum_probs=43.6

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc
Q psy11646         20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH   80 (433)
Q Consensus        20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~   80 (433)
                      .+++.+++... .+|+.|||.=||+|..+.+. ..+  .  -+++|+|+++...+.|++|+
T Consensus       195 ~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa-~~l--g--R~~ig~El~~~y~~~a~~Ri  249 (279)
T d1eg2a_         195 AVIERLVRALS-HPGSTVLDFFAGSGVTARVA-IQE--G--RNSICTDAAPVFKEYYQKQL  249 (279)
T ss_dssp             HHHHHHHHHHS-CTTCEEEETTCTTCHHHHHH-HHH--T--CEEEEEESSTHHHHHHHHHH
T ss_pred             hHHHHHHHhhc-CCCCEEEecCCCCcHHHHHH-HHh--C--CeEEEEeCCHHHHHHHHHHH
Confidence            56667776653 68999999999999987333 322  2  38999999999999999987

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.29  E-value=0.036  Score=46.22  Aligned_cols=99  Identities=13%  Similarity=0.102  Sum_probs=61.2

Q ss_pred             HHhcCCCCCCEEEEECC--CCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc----
Q psy11646         26 IDQFKWTDNESVLDVGC--GPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES----   99 (433)
Q Consensus        26 ~~~l~~~~~~~VLDIGc--G~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~----   99 (433)
                      .+..+.+++.+||=.|+  |.|..+..+++ ..  + .++++++.+++-.+.+++.. ..  ..  .|..+..+.+    
T Consensus        18 ~~~~~~~~g~~VlI~ga~g~vG~~~iqla~-~~--g-~~vi~~~~~~~~~~~l~~~G-a~--~v--i~~~~~~~~~~v~~   88 (183)
T d1pqwa_          18 CEVGRLSPGERVLIHSATGGVGMAAVSIAK-MI--G-ARIYTTAGSDAKREMLSRLG-VE--YV--GDSRSVDFADEILE   88 (183)
T ss_dssp             HTTSCCCTTCEEEETTTTSHHHHHHHHHHH-HH--T-CEEEEEESSHHHHHHHHTTC-CS--EE--EETTCSTHHHHHHH
T ss_pred             HHHhCCCCCCEEEEECCCCCcccccchhhc-cc--c-ccceeeeccccccccccccc-cc--cc--ccCCccCHHHHHHH
Confidence            34445678999999874  23344433333 21  2 58888888888888888652 11  11  2323322221    


Q ss_pred             -cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        100 -IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       100 -~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                       .....||+|+..-.       ...++...++|+++|+++..
T Consensus        89 ~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          89 LTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             HTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEEC
T ss_pred             HhCCCCEEEEEeccc-------chHHHHHHHHhcCCCEEEEE
Confidence             12356999998655       23566778999999998875

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=92.15  E-value=0.058  Score=45.03  Aligned_cols=102  Identities=13%  Similarity=0.065  Sum_probs=63.3

Q ss_pred             HHHhcCCCCCCEEEEECCCCCh--hHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc---ccc
Q psy11646         25 YIDQFKWTDNESVLDVGCGPGN--VTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN---LES   99 (433)
Q Consensus        25 l~~~l~~~~~~~VLDIGcG~G~--~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~---l~~   99 (433)
                      +.+..+.++|++||=.|++.|.  .+.. +++.   .+.++++++.+++..+.+++.-   .-+.+.-+-+...   ...
T Consensus        21 l~~~~~v~~G~~VlV~ga~ggvG~~aiq-lak~---~Ga~vi~~~~~~~~~~~~~~~G---a~~vi~~~~~~~~~~~~~~   93 (182)
T d1v3va2          21 LLEVCGVKGGETVLVSAAAGAVGSVVGQ-IAKL---KGCKVVGAAGSDEKIAYLKQIG---FDAAFNYKTVNSLEEALKK   93 (182)
T ss_dssp             HHTTTCCCSSCEEEESSTTSHHHHHHHH-HHHH---TTCEEEEEESSHHHHHHHHHTT---CSEEEETTSCSCHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEEeCCCchhHHHHH-HHHc---cCCEEEEeCCCHHHHHHHHhhh---hhhhcccccccHHHHHHHH
Confidence            3445566899999988876643  3322 3332   2369999999999888888763   1122211111110   111


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      .....+|+|+-.-.       ...+....+.|+|+|.++..
T Consensus        94 ~~~~Gvd~v~D~vG-------~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          94 ASPDGYDCYFDNVG-------GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             HCTTCEEEEEESSC-------HHHHHHHGGGEEEEEEEEEC
T ss_pred             hhcCCCceeEEecC-------chhhhhhhhhccCCCeEEee
Confidence            12356999887543       34677889999999998875

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=91.76  E-value=0.09  Score=46.40  Aligned_cols=125  Identities=10%  Similarity=0.059  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhccc--CCCC----------------------------------
Q psy11646         16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPN--LPKS----------------------------------   59 (433)
Q Consensus        16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~--~~~~----------------------------------   59 (433)
                      +.+..++...+....+..+..++|--||+|++.++...-.  .+.+                                  
T Consensus        33 ~Laa~il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~  112 (249)
T d1o9ga_          33 RLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERR  112 (249)
T ss_dssp             HHHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhcccc
Confidence            3566777777766667777789999999999986553311  0000                                  


Q ss_pred             -CcEEEEEeCCHHHHHHHH---hhc----CCCCeEEEEecccCCcc-cc-cccCcEeEEEEcccccc-hh--------hH
Q psy11646         60 -VVKLVGLDVSPNMIKHAK---NHH----TNPKLEFVVANIADQNL-ES-IFLAKFNKIFSFYCLHW-VQ--------DQ  120 (433)
Q Consensus        60 -~~~v~gvDiS~~~l~~A~---~~~----~~~~i~~~~~Di~~~~l-~~-~~~~~fD~Vis~~~l~~-~~--------d~  120 (433)
                       ...+.|.|+++.+++.|+   ++.    ....+++.+.|+.+... .+ ......++|++|...-. +.        ..
T Consensus       113 ~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~  192 (249)
T d1o9ga_         113 EQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPV  192 (249)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHH
T ss_pred             ccCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHH
Confidence             024678999999998884   344    34678899999865321 11 12356789999987632 21        23


Q ss_pred             HHHHHHHHHhccCCCEEEEE
Q psy11646        121 RQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       121 ~~~l~~i~~~LkpGG~lll~  140 (433)
                      ..+...+.+.+.....++++
T Consensus       193 ~~~~~~l~~~~p~~s~~~it  212 (249)
T d1o9ga_         193 AGLLRSLASALPAHAVIAVT  212 (249)
T ss_dssp             HHHHHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHHHccCCCCcEEEEe
Confidence            45566677777555555554

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.56  E-value=0.83  Score=36.82  Aligned_cols=101  Identities=20%  Similarity=0.117  Sum_probs=60.4

Q ss_pred             EEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcccc
Q psy11646         36 SVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCL  114 (433)
Q Consensus        36 ~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l  114 (433)
                      +|+=||||. |......+.+....  .+++|+|.+++.++.|++.-   .+.....+...     ......|+|+..-..
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~--~~I~~~D~~~~~~~~a~~~~---~~~~~~~~~~~-----~~~~~~dlIila~p~   72 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFK--GKIYGYDINPESISKAVDLG---IIDEGTTSIAK-----VEDFSPDFVMLSSPV   72 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCC--SEEEEECSCHHHHHHHHHTT---SCSEEESCGGG-----GGGTCCSEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCC--eEEEEEECChHHHHHHHHhh---cchhhhhhhhh-----hhccccccccccCCc
Confidence            578899986 33222333332222  48999999999999999863   22222222211     111457999887664


Q ss_pred             cchhhHHHHHHHHHHhccCCCEEEEEeccCCchhh
Q psy11646        115 HWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYD  149 (433)
Q Consensus       115 ~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~  149 (433)
                      .   ....++.++.+.++++..+.-+.....+..+
T Consensus        73 ~---~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~  104 (171)
T d2g5ca2          73 R---TFREIAKKLSYILSEDATVTDQGSVKGKLVY  104 (171)
T ss_dssp             H---HHHHHHHHHHHHSCTTCEEEECCSCCTHHHH
T ss_pred             h---hhhhhhhhhhccccccccccccccccHHHHH
Confidence            3   3466788899999988765544333344333

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=91.54  E-value=0.038  Score=45.88  Aligned_cols=99  Identities=12%  Similarity=0.070  Sum_probs=63.4

Q ss_pred             HhcCCCCCCEEEEECCCC--ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc-----
Q psy11646         27 DQFKWTDNESVLDVGCGP--GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES-----   99 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~--G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~-----   99 (433)
                      +..+.+++.+||=.|+|.  |..+..+ ++.  . +.++++++.|++-.+.+++.- ..  ++  .|..+..+.+     
T Consensus        22 ~~~~l~~g~~Vlv~ga~g~vG~~~iql-ak~--~-Ga~Vi~~~~s~~k~~~~~~lG-a~--~v--i~~~~~d~~~~v~~~   92 (179)
T d1qora2          22 KTYEIKPDEQFLFHAAAGGVGLIACQW-AKA--L-GAKLIGTVGTAQKAQSALKAG-AW--QV--INYREEDLVERLKEI   92 (179)
T ss_dssp             TTSCCCTTCEEEESSTTBHHHHHHHHH-HHH--H-TCEEEEEESSHHHHHHHHHHT-CS--EE--EETTTSCHHHHHHHH
T ss_pred             HHhCCCCCCEEEEEccccccchHHHHH-HHH--h-CCeEeecccchHHHHHHHhcC-Ce--EE--EECCCCCHHHHHHHH
Confidence            444568899999997775  3444333 333  2 259999999999999998763 11  22  2333332222     


Q ss_pred             cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      .....+|+|+-...-.       .+....+.++++|++++..
T Consensus        93 t~g~g~d~v~d~~g~~-------~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          93 TGGKKVRVVYDSVGRD-------TWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             TTTCCEEEEEECSCGG-------GHHHHHHTEEEEEEEEECC
T ss_pred             hCCCCeEEEEeCccHH-------HHHHHHHHHhcCCeeeecc
Confidence            1235689888755422       4567788999999887643

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=90.31  E-value=0.51  Score=38.25  Aligned_cols=100  Identities=19%  Similarity=0.180  Sum_probs=62.8

Q ss_pred             HhcCCCCCCEEEEECCCCC-hhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcE
Q psy11646         27 DQFKWTDNESVLDVGCGPG-NVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKF  105 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGcG~G-~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~f  105 (433)
                      +..+.++|.+||=+|||.= ..+ ..+++..  + .+++++|.+++-++.+++.-   .-.++  |..+..........+
T Consensus        24 ~~~~~~~G~~VlI~GaG~vG~~a-~qlak~~--G-a~~i~~~~~~~~~~~a~~lG---ad~~i--~~~~~~~~~~~~~~~   94 (168)
T d1uufa2          24 RHWQAGPGKKVGVVGIGGLGHMG-IKLAHAM--G-AHVVAFTTSEAKREAAKALG---ADEVV--NSRNADEMAAHLKSF   94 (168)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHH-HHHHHHT--T-CEEEEEESSGGGHHHHHHHT---CSEEE--ETTCHHHHHTTTTCE
T ss_pred             HHhCCCCCCEEEEeccchHHHHH-HHHhhcc--c-ccchhhccchhHHHHHhccC---CcEEE--ECchhhHHHHhcCCC
Confidence            4566789999999998753 333 3333332  2 57789999999888888762   11222  222221111223579


Q ss_pred             eEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        106 NKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       106 D~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      |.++-.-.-.      ..+....++++++|++++..
T Consensus        95 D~vid~~g~~------~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          95 DFILNTVAAP------HNLDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             EEEEECCSSC------CCHHHHHTTEEEEEEEEECC
T ss_pred             ceeeeeeecc------hhHHHHHHHHhcCCEEEEec
Confidence            9988765422      23556778999999998864

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.40  E-value=0.22  Score=40.91  Aligned_cols=97  Identities=12%  Similarity=0.211  Sum_probs=59.5

Q ss_pred             HhcCCCCCCEEEEECC-CC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCc
Q psy11646         27 DQFKWTDNESVLDVGC-GP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAK  104 (433)
Q Consensus        27 ~~l~~~~~~~VLDIGc-G~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~  104 (433)
                      +..+.+++++||=.|+ |. |..+.. +++..  + .++++++.+++..+.+++.- ...  .  .|..+..........
T Consensus        21 ~~~~~~~g~~VlI~ga~G~vG~~aiq-lak~~--G-~~vi~~~~~~~~~~~~~~lG-a~~--~--i~~~~~~~~~~~~~g   91 (171)
T d1iz0a2          21 KRAQARPGEKVLVQAAAGALGTAAVQ-VARAM--G-LRVLAAASRPEKLALPLALG-AEE--A--ATYAEVPERAKAWGG   91 (171)
T ss_dssp             HHTTCCTTCEEEESSTTBHHHHHHHH-HHHHT--T-CEEEEEESSGGGSHHHHHTT-CSE--E--EEGGGHHHHHHHTTS
T ss_pred             HHhCCCCCCEEEEEeccccchhhhhh-hhccc--c-cccccccccccccccccccc-cce--e--eehhhhhhhhhcccc
Confidence            4456689999999885 33 334423 33332  3 58999999999888888752 111  1  132221111122356


Q ss_pred             EeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        105 FNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       105 fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      +|+|+-...    +    .+....+.|+|+|+++..
T Consensus        92 ~D~v~d~~G----~----~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          92 LDLVLEVRG----K----EVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             EEEEEECSC----T----THHHHHTTEEEEEEEEEC
T ss_pred             ccccccccc----h----hHHHHHHHHhcCCcEEEE
Confidence            999987432    1    245677899999998875

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.60  E-value=0.31  Score=40.33  Aligned_cols=107  Identities=9%  Similarity=0.018  Sum_probs=62.7

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCCh--hHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccccc
Q psy11646         23 SQYIDQFKWTDNESVLDVGCGPGN--VTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESI  100 (433)
Q Consensus        23 ~~l~~~l~~~~~~~VLDIGcG~G~--~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~  100 (433)
                      ..+.+.-..+++.+||=-|++.|.  .+..+++ .   .+.+|+++.-|++-.+.+++.-...-+.... +... .....
T Consensus        21 ~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak-~---~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~-~~~~-~~~~~   94 (176)
T d1xa0a2          21 HRLEEHGLTPERGPVLVTGATGGVGSLAVSMLA-K---RGYTVEASTGKAAEHDYLRVLGAKEVLARED-VMAE-RIRPL   94 (176)
T ss_dssp             HHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHH-H---TTCCEEEEESCTTCHHHHHHTTCSEEEECC-----------C
T ss_pred             HHHHHhCCCCCCCEEEEEeccchHHHHHHHHHH-H---cCCceEEecCchHHHHHHHhcccceeeecch-hHHH-HHHHh
Confidence            344444455678899998866553  4433333 2   2368999999999999998763111111111 1100 01111


Q ss_pred             ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646        101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      ..+.+|+|+-.-.=       ..+....+.|+|||+++....
T Consensus        95 ~~~gvD~vid~vgg-------~~~~~~l~~l~~~Griv~~G~  129 (176)
T d1xa0a2          95 DKQRWAAAVDPVGG-------RTLATVLSRMRYGGAVAVSGL  129 (176)
T ss_dssp             CSCCEEEEEECSTT-------TTHHHHHHTEEEEEEEEECSC
T ss_pred             hccCcCEEEEcCCc-------hhHHHHHHHhCCCceEEEeec
Confidence            23679998875442       246677899999999987653

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.36  E-value=0.23  Score=45.10  Aligned_cols=80  Identities=18%  Similarity=0.147  Sum_probs=53.0

Q ss_pred             CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEccc
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYC  113 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~  113 (433)
                      +.+|+|+-||.|.++. -+.... -...-+.++|+.+.+++..+.++  +...+...|+.+..........+|+++....
T Consensus         2 p~kv~~lF~G~Gg~~~-gl~~aG-~~~~~~~a~E~~~~a~~~~~~n~--~~~~~~~~di~~~~~~~~~~~~~Dll~ggpP   77 (343)
T d1g55a_           2 PLRVLELYSGVGGMHH-ALRESC-IPAQVVAAIDVNTVANEVYKYNF--PHTQLLAKTIEGITLEEFDRLSFDMILMSPP   77 (343)
T ss_dssp             CEEEEEETCTTCHHHH-HHHHHT-CSEEEEEEECCCHHHHHHHHHHC--TTSCEECSCGGGCCHHHHHHHCCSEEEECCC
T ss_pred             CCEEEEcCcCccHHHH-HHHHcC-CCCeEEEEEECCHHHHHHHHHHC--CCCCcccCchhhCCHhHcCCCCccEEEeecc
Confidence            4689999999999873 343221 11123679999999999999887  4556677888865433333346899998766


Q ss_pred             ccch
Q psy11646        114 LHWV  117 (433)
Q Consensus       114 l~~~  117 (433)
                      ...+
T Consensus        78 Cq~f   81 (343)
T d1g55a_          78 CQPF   81 (343)
T ss_dssp             ----
T ss_pred             cccc
Confidence            5433

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.81  E-value=0.25  Score=38.57  Aligned_cols=92  Identities=11%  Similarity=0.027  Sum_probs=56.3

Q ss_pred             EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc-cccCcEeEEEEcccc
Q psy11646         36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES-IFLAKFNKIFSFYCL  114 (433)
Q Consensus        36 ~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~-~~~~~fD~Vis~~~l  114 (433)
                      +|+=+|+  |.++..++..+...+ ..|+.+|.+++.++.+++.+   ++.++.+|..+...-. ..-...|.+++...-
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g-~~v~vid~d~~~~~~~~~~~---~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~   75 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKG-HDIVLIDIDKDICKKASAEI---DALVINGDCTKIKTLEDAGIEDADMYIAVTGK   75 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC---SSEEEESCTTSHHHHHHTTTTTCSEEEECCSC
T ss_pred             EEEEECC--CHHHHHHHHHHHHCC-CCcceecCChhhhhhhhhhh---hhhhccCcccchhhhhhcChhhhhhhcccCCc
Confidence            5666665  667644443333333 79999999999999888764   5778889987643322 223567888874332


Q ss_pred             cchhhHHHHHHHHHHhccCCCE
Q psy11646        115 HWVQDQRQAISNIYNLLMPGGE  136 (433)
Q Consensus       115 ~~~~d~~~~l~~i~~~LkpGG~  136 (433)
                      .   +.........+.+.+...
T Consensus        76 d---~~N~~~~~~~k~~~~~~i   94 (132)
T d1lssa_          76 E---EVNLMSSLLAKSYGINKT   94 (132)
T ss_dssp             H---HHHHHHHHHHHHTTCCCE
T ss_pred             H---HHHHHHHHHHHHcCCceE
Confidence            1   112233444556666643

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=87.72  E-value=2  Score=37.91  Aligned_cols=94  Identities=12%  Similarity=0.107  Sum_probs=62.1

Q ss_pred             CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcccc
Q psy11646         35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCL  114 (433)
Q Consensus        35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l  114 (433)
                      ++|||+=||.|.+.. -+...   ++..+.++|+++.+.+..+.++.   -.....|+.+.....  ....|+++.....
T Consensus         1 mk~~~lF~G~Gg~~~-gl~~a---G~~~~~a~e~d~~a~~~~~~N~~---~~~~~~Di~~~~~~~--~~~~dll~~g~PC   71 (324)
T d1dcta_           1 MNLISLFSGAGGLDL-GFQKA---GFRIICANEYDKSIWKTYESNHS---AKLIKGDISKISSDE--FPKCDGIIGGPPC   71 (324)
T ss_dssp             CEEEEESCSSCHHHH-HHHHH---TCEEEEEEECCHHHHHHHHHHCC---SEEEESCTTTSCGGG--SCCCSEEEECCCC
T ss_pred             CeEEEeCcCcCHHHH-HHHHC---CCEEEEEEeCCHHHHHHHHHHCC---CCCccCChhhCCHhH--cccccEEeecccc
Confidence            479999999999984 34332   43457799999999999888872   356778998754332  2468999986554


Q ss_pred             cch---------hhHH-HH---HHHHHHhccCCCEE
Q psy11646        115 HWV---------QDQR-QA---ISNIYNLLMPGGEV  137 (433)
Q Consensus       115 ~~~---------~d~~-~~---l~~i~~~LkpGG~l  137 (433)
                      ..+         .|.. ..   +-++.+.++|.-.+
T Consensus        72 q~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk~~~  107 (324)
T d1dcta_          72 QSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFL  107 (324)
T ss_dssp             TTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCSEEE
T ss_pred             cccccccccccccccccchHHHHHHHHHhhCCceee
Confidence            332         2222 22   34456677786433

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=84.64  E-value=4.5  Score=35.83  Aligned_cols=104  Identities=11%  Similarity=0.093  Sum_probs=65.8

Q ss_pred             CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc------CCCCeEEEEecccCCccccccc-----
Q psy11646         34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH------TNPKLEFVVANIADQNLESIFL-----  102 (433)
Q Consensus        34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~------~~~~i~~~~~Di~~~~l~~~~~-----  102 (433)
                      ...|+.+|||-=.-...+ .  .+.+ .+++-+|. |.+++.-++.+      ...+..+...|+.+........     
T Consensus        90 ~~qvV~LGaGlDTr~~Rl-~--~~~~-~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~  164 (297)
T d2uyoa1          90 IRQFVILASGLDSRAYRL-D--WPTG-TTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDP  164 (297)
T ss_dssp             CCEEEEETCTTCCHHHHS-C--CCTT-CEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCT
T ss_pred             CCeEEEeCcccCChhhhc-C--CCcC-ceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCC
Confidence            346777999887655222 1  2223 57888884 66766544443      1245677778887542221211     


Q ss_pred             CcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEec
Q psy11646        103 AKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLN  142 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~  142 (433)
                      +.--++++-.++.+++  +...+++.+.+...||..+++...
T Consensus       165 ~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~  206 (297)
T d2uyoa1         165 SARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS  206 (297)
T ss_dssp             TSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             CCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence            3334666667777774  467889999999999999887643

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.99  E-value=1.3  Score=36.36  Aligned_cols=100  Identities=9%  Similarity=0.086  Sum_probs=59.7

Q ss_pred             HhcCCCCC--CEEEEEC--CCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc---
Q psy11646         27 DQFKWTDN--ESVLDVG--CGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES---   99 (433)
Q Consensus        27 ~~l~~~~~--~~VLDIG--cG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~---   99 (433)
                      +..+.+++  .+||=.|  .|.|..+..++ +....  ..++++..+++......+..+..    ...|..+..+.+   
T Consensus        22 ~~~~~~~G~~etVLI~gaaGgVG~~aiQla-k~~Ga--~~vi~~~~~~e~~~~l~~~~gad----~vi~~~~~~~~~~~~   94 (187)
T d1vj1a2          22 EKGHISAGSNQTMVVSGAAGACGSLAGQIG-HLLGC--SRVVGICGTQEKCLFLTSELGFD----AAVNYKTGNVAEQLR   94 (187)
T ss_dssp             HHSCCCTTSCCEEEESSTTSTTGGGHHHHH-HHTTC--SEEEEEESSHHHHHHHHHHSCCS----EEEETTSSCHHHHHH
T ss_pred             HHhCCCCCCCCEEEEECCCchhhHHHHHHH-HHcCC--cceecccchHHHHhhhhhcccce----EEeeccchhHHHHHH
Confidence            33344555  7899877  45666774444 44332  37888887877666555443221    122333332221   


Q ss_pred             -cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        100 -IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       100 -~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                       .....+|+|+-.-.       ...+....+.|+|+|+++..
T Consensus        95 ~~~~~GvDvv~D~vG-------g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2          95 EACPGGVDVYFDNVG-------GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             HHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEEC
T ss_pred             HHhccCceEEEecCC-------chhHHHHhhhccccccEEEe
Confidence             12356999986554       34677889999999998865

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=83.74  E-value=0.32  Score=39.94  Aligned_cols=101  Identities=11%  Similarity=0.135  Sum_probs=64.6

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcc
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFY  112 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~  112 (433)
                      ++.+|+=||+|.-.......+..+   +.+|+.+|.+++.++..+..+. .++++...+-+.  +.+ .-...|+|+..-
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l---GA~V~~~D~~~~~l~~l~~~~~-~~~~~~~~~~~~--l~~-~~~~aDivI~aa  103 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL---GAQVQIFDINVERLSYLETLFG-SRVELLYSNSAE--IET-AVAEADLLIGAV  103 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHG-GGSEEEECCHHH--HHH-HHHTCSEEEECC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC---CCEEEEEeCcHHHHHHHHHhhc-ccceeehhhhhh--HHH-hhccCcEEEEee
Confidence            467999999997554423333322   2699999999999998887752 234444333221  221 124579999876


Q ss_pred             cccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646        113 CLHWVQDQRQAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       113 ~l~~~~d~~~~l~~i~~~LkpGG~lll~  140 (433)
                      .+.--+-+.-.-+++.+.+|||..++-.
T Consensus       104 lipG~~aP~lIt~~mv~~Mk~GSVIVDv  131 (168)
T d1pjca1         104 LVPGRRAPILVPASLVEQMRTGSVIVDV  131 (168)
T ss_dssp             CCTTSSCCCCBCHHHHTTSCTTCEEEET
T ss_pred             ecCCcccCeeecHHHHhhcCCCcEEEEe
Confidence            5543333344457888999999987653

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=83.22  E-value=1.6  Score=39.02  Aligned_cols=72  Identities=8%  Similarity=0.020  Sum_probs=51.0

Q ss_pred             CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcc
Q psy11646         33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFY  112 (433)
Q Consensus        33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~  112 (433)
                      .+.+|||+=||.|.++. -+..   .++..+.++|+++.+++..+.++...    .+.|+.+.....  ...+|+++...
T Consensus        10 ~~lrv~~lFsG~Gg~~~-gl~~---aG~~~v~a~e~d~~a~~~~~~N~~~~----~~~Di~~~~~~~--~~~~Dll~ggp   79 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRL-ALES---CGAECVYSNEWDKYAQEVYEMNFGEK----PEGDITQVNEKT--IPDHDILCAGF   79 (327)
T ss_dssp             TTCEEEEETCTTTHHHH-HHHH---TTCEEEEEECCCHHHHHHHHHHHSCC----CBSCGGGSCGGG--SCCCSEEEEEC
T ss_pred             CCCeEEEECccccHHHH-HHHH---CCCeEEEEEeCCHHHHHHHHHHCCCC----CcCchhcCchhh--cceeeeeeccc
Confidence            57899999999999984 4443   23345778999999999999987321    247887653222  24689999865


Q ss_pred             cc
Q psy11646        113 CL  114 (433)
Q Consensus       113 ~l  114 (433)
                      ..
T Consensus        80 PC   81 (327)
T d2c7pa1          80 PC   81 (327)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=82.95  E-value=1.6  Score=38.00  Aligned_cols=121  Identities=15%  Similarity=0.119  Sum_probs=66.1

Q ss_pred             HHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeeccccCceEEEccccccchHHHHHHhcCCCCCeE
Q psy11646        125 SNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQGDITKESTIKEIFSHFDDEKVDL  204 (433)
Q Consensus       125 ~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~pl~gv~~iqgDi~~~~t~~~il~~~~~~~~dl  204 (433)
                      ..+.+.+.|+|.++..+..........+.+..              ......+.+..+|+.+         .+....+|.
T Consensus       101 ~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~--------------~~~~~nv~~~~~Di~~---------~~~~~~fD~  157 (250)
T d1yb2a1         101 SYILYALNGKGTLTVVERDEDNLKKAMDNLSE--------------FYDIGNVRTSRSDIAD---------FISDQMYDA  157 (250)
T ss_dssp             HHHHHHHTTSSEEEEECSCHHHHHHHHHHHHT--------------TSCCTTEEEECSCTTT---------CCCSCCEEE
T ss_pred             HHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH--------------hcCCCceEEEEeeeec---------ccccceeee
Confidence            34667778888887765443222222221211              1112345566666544         244568999


Q ss_pred             EEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHHHHHHHHhcc-cceeEE---------ecC
Q psy11646        205 VVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIF-FENVSI---------AKP  274 (433)
Q Consensus       205 VvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~~~~~~l~~~-F~~v~~---------~KP  274 (433)
                      |+.|+.-.                ..++.-+.+.|+|||.+++-.=.-.........++.. |..+.+         .++
T Consensus       158 V~ld~p~p----------------~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~~i~~~E~~~R~~~~~~  221 (250)
T d1yb2a1         158 VIADIPDP----------------WNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETVELMKRRILVRE  221 (250)
T ss_dssp             EEECCSCG----------------GGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEEEEEECCCCCCT
T ss_pred             eeecCCch----------------HHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCceeEEEEEEeEEEEEcC
Confidence            99986321                1357778899999999976322222244555555433 654432         235


Q ss_pred             CCCcccccce
Q psy11646        275 KSSRNSSIES  284 (433)
Q Consensus       275 ~~sr~~s~E~  284 (433)
                      .+.|++.+-+
T Consensus       222 ~~~RP~~~mv  231 (250)
T d1yb2a1         222 GATRPASDDL  231 (250)
T ss_dssp             TCCCCGGGGS
T ss_pred             CccCCCCCCc
Confidence            5566655443

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=81.68  E-value=0.84  Score=37.17  Aligned_cols=104  Identities=13%  Similarity=0.115  Sum_probs=60.1

Q ss_pred             HHHhcCCCCCCEEEEECCCCC--hhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccccccc
Q psy11646         25 YIDQFKWTDNESVLDVGCGPG--NVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFL  102 (433)
Q Consensus        25 l~~~l~~~~~~~VLDIGcG~G--~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~  102 (433)
                      +.+.-..+++.+||=-|++.|  ..+..+++ ..   +.+|+++.-|++-.+.+++.-. ..+ +..-|...........
T Consensus        15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk-~~---Ga~Viat~~s~~k~~~~~~lGa-d~v-i~~~~~~~~~~~~~~~   88 (167)
T d1tt7a2          15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLN-KR---GYDVVASTGNREAADYLKQLGA-SEV-ISREDVYDGTLKALSK   88 (167)
T ss_dssp             HHHTTCCGGGCCEEEESTTSHHHHHHHHHHH-HH---TCCEEEEESSSSTHHHHHHHTC-SEE-EEHHHHCSSCCCSSCC
T ss_pred             HHHhcCCCCCCEEEEeCCcchHHHHHHHHHH-Hc---CCceEEEecCHHHHHHHHhhcc-cce-EeccchhchhhhcccC
Confidence            333333345777887664333  34433333 22   2589999999988888887631 111 1111211111211223


Q ss_pred             CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646        103 AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL  141 (433)
Q Consensus       103 ~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~  141 (433)
                      +.+|+|+-.-.       ...+.+..+.|+|+|+++...
T Consensus        89 ~gvd~vid~vg-------g~~~~~~~~~l~~~G~iv~~G  120 (167)
T d1tt7a2          89 QQWQGAVDPVG-------GKQLASLLSKIQYGGSVAVSG  120 (167)
T ss_dssp             CCEEEEEESCC-------THHHHHHHTTEEEEEEEEECC
T ss_pred             CCceEEEecCc-------HHHHHHHHHHhccCceEEEee
Confidence            67999876543       336778899999999988764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=81.25  E-value=1.4  Score=33.82  Aligned_cols=90  Identities=10%  Similarity=0.112  Sum_probs=51.1

Q ss_pred             CCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc-cccCcEeEEEEcccccchhhHH
Q psy11646         43 GPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES-IFLAKFNKIFSFYCLHWVQDQR  121 (433)
Q Consensus        43 G~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~-~~~~~fD~Vis~~~l~~~~d~~  121 (433)
                      |.|.++..+...+...+ ..|+.+|.+++.++.++..    ....+.+|..+...-. ..-...|.|++...=.   +..
T Consensus         7 G~G~~G~~la~~L~~~g-~~vvvid~d~~~~~~~~~~----~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~---~~~   78 (134)
T d2hmva1           7 GLGRFGGSIVKELHRMG-HEVLAVDINEEKVNAYASY----ATHAVIANATEENELLSLGIRNFEYVIVAIGAN---IQA   78 (134)
T ss_dssp             CCSHHHHHHHHHHHHTT-CCCEEEESCHHHHHHTTTT----CSEEEECCTTCTTHHHHHTGGGCSEEEECCCSC---HHH
T ss_pred             CCCHHHHHHHHHHHHCC-CeEEEecCcHHHHHHHHHh----CCcceeeecccchhhhccCCccccEEEEEcCch---HHh
Confidence            44667644443333333 7899999999999988654    4567788887654322 1125678777644421   112


Q ss_pred             HHHHHHHHhccCCCEEEEE
Q psy11646        122 QAISNIYNLLMPGGEVLLL  140 (433)
Q Consensus       122 ~~l~~i~~~LkpGG~lll~  140 (433)
                      ..+-.+.+.+.|.+.++..
T Consensus        79 ~~~~~~~~~~~~~~~iiar   97 (134)
T d2hmva1          79 STLTTLLLKELDIPNIWVK   97 (134)
T ss_dssp             HHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHHHHHHcCCCcEEee
Confidence            2233333344456665543