Psyllid ID: psy11652

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
Protein Sequence
MDKSKNDEYVSGIQYGPCSENVQISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVMEDQFSMRH
Secondary Structure (PSIPRED)
ccccccHHccccccccccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccEEEcccccccccccccccccccEEEccccccccccccccccccEEEccccccccccccccccccccEEcccccccccccccccccccccEEEccccccccccHHHHHcHHccccEEEccccccccccHHccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccEEEccccccccccccccccHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHEccccccccccccccccEEEEEEEccccccHccccccccHHHHHHccEEcccccccccHHHHHccccccEEEccccccHHccccccccEEEEcccccccccccHcccccccEEEccccccccccHHHHccccEEEccccccccccHHHHccccccEEEccccccccccHHHHHcccccEEEccccccccccHHHHHHHHHHccEEEcccccHHHccHHHHccccccEEEccccccccccHHHHHHHccccEEEccccccccccccccccccEEEEcccccccccccHcccccccccHHHHccccccccccHccccc
Coil and Loop (DISEMBL)
mdkskndeyvsgiqygpcsenvQISCILLMSAENEDNQIAEletanwspeiQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNyikefvipnrkhiekldlsNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLksislsgnkltripdfihnkrlshlnlgyNFLNELILESSIveneiidqnmlfnsnavmedqfsmrh
Flexible Loop (DISEMBL)
mdkskndeyvsgiqygpcseNVQISCILLMSAENEDNQIAELetanwspeIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNmlfnsnavmedqfsmrh
Low Complexity Region (SEG)
MDKSKNDEYVSGIQYGPCSENVQISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDlsnnlistinlnlnntYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRnlkklkylylhnnnIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVMEDQFSMRH
Disordered region (IsUnstruct)
********YVSGIQYGPCSENVQISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNS************
Disordered Region (DISOPRED)
MDKSKNDEYVSGIQYGPCSENVQISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVME***SM**
Disordered Region (DISEMBL)
********YVSGIQYGPCSENVQISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVMEDQFSMRH
Disordered Region (DISPRO)
**KSKNDEYVSGIQYGPCSENVQISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNS************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDKSKNDEYVSGIQYGPCSENVQISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVMEDQFSMRH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	325	2.2.26 [Sep-21-2011]
Q6P1C6	1117	Leucine-rich repeats and	yes	N/A	0.630	0.183	0.308	2e-12
Q52KR2	1054	Leucine-rich repeats and	no	N/A	0.587	0.181	0.330	2e-11
O94898	1065	Leucine-rich repeats and	yes	N/A	0.553	0.169	0.325	1e-10
O75094	1523	Slit homolog 3 protein OS	no	N/A	0.507	0.108	0.331	8e-10
O75473	907	Leucine-rich repeat-conta	no	N/A	0.661	0.237	0.278	1e-09
D4A7P2	515	Leucine-rich repeat trans	no	N/A	0.430	0.271	0.372	1e-09
Q8BGA3	515	Leucine-rich repeat trans	no	N/A	0.430	0.271	0.372	1e-09
O43300	516	Leucine-rich repeat trans	no	N/A	0.430	0.271	0.372	1e-09
Q9DE67	343	Lumican OS=Coturnix cotur	N/A	N/A	0.633	0.600	0.334	2e-09
Q32Q07	716	Leucine-rich repeat neuro	no	N/A	0.723	0.328	0.291	3e-09

>sp|Q6P1C6|LRIG3_MOUSE Leucine-rich repeats and immunoglobulin-like domains protein 3 OS=Mus musculus GN=Lrig3 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 67/217 (30%), Positives = 110/217 (50%), Gaps = 12/217 (5%)

Query: 86  LLQTLDSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPN----RKH 139
           L++  D LP  +  L +++N L  +    L+ + SL+ + L+NN ++   IPN      +
Sbjct: 65  LVRLPDPLPAWVTRLDLSHNRLSFIQTSSLSHLQSLQEVKLNNNELE--TIPNLGSISAN 122

Query: 140 IEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISE 198
           I +L L+ N I  I    L     ++ L LS N IS+L    F  L +  LY+  N++S 
Sbjct: 123 IRQLSLAGNAIDKILPEQLEAFQSLETLDLSNNNISELRT-AFPPLQLKYLYINNNRVSS 181

Query: 199 IHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNL 258
           +    F+ L STL  L L  NR++ I      L +L++L L+ N I+ +   TF+ L  L
Sbjct: 182 MEPGYFDNLASTLLVLKLNRNRISAIPPKMFKLPQLQHLELNRNKIKNVDGLTFQGLGAL 241

Query: 259 KSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
           KS+ +  N +T++ D  F     +  L L +N L E+
Sbjct: 242 KSLKMQRNGVTKLMDGAFWGLSNMEVLQLDHNNLTEI 278

Mus musculus (taxid: 10090)

>sp|Q52KR2|LRIG2_MOUSE Leucine-rich repeats and immunoglobulin-like domains protein 2 OS=Mus musculus GN=Lrig2 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 109/203 (53%), Gaps = 12/203 (5%)

Query: 96  TMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEK----LDLSNNL 149
            +E+L +++N +  +      RM SLK++ LSNN I         ++      + L+ N 
Sbjct: 144 ALESLDLSSNIISEIKTSSFPRM-SLKYLNLSNNRISTLEAGCFDNLSDSLLVVKLNRNR 202

Query: 150 ISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFR-LYLKFNKISEIHDFAFNGLN 208
           IS I   +    +++ L L  N+I  +   TF+ L+  R L ++ N IS++ D AF GLN
Sbjct: 203 ISMIPPKVFKLPHLQFLELKRNRIKIVEGLTFQGLDSLRSLKMQRNGISKLKDGAFFGLN 262

Query: 209 STLEFLDLENNRLTNINQCF-RNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNK 267
           + +E L+LE+N LT +N+ +   L+ L+ LY+  N IE I  + +E    L  + LS N+
Sbjct: 263 N-MEELELEHNNLTGVNKGWLYGLRMLQQLYMSQNAIEKISPDAWEFCQRLSELDLSYNQ 321

Query: 268 LTRIPD--FIHNKRLSHLNLGYN 288
           LTR+ +  F+    L  LNLG N
Sbjct: 322 LTRLDESAFVGLSLLERLNLGDN 344

Mus musculus (taxid: 10090)

>sp|O94898|LRIG2_HUMAN Leucine-rich repeats and immunoglobulin-like domains protein 2 OS=Homo sapiens GN=LRIG2 PE=2 SV=3

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 105/212 (49%), Gaps = 32/212 (15%)

Query: 108 VNYLELNRMTSLKWIVLSNNYIKEFVIPN--RKHIEKLDLSNNLIST------------- 152
           +N   L    +L+ + LS+N I E    +  R  ++ L+LSNN I+T             
Sbjct: 135 INAQALQFYPALESLDLSSNIISEIKTSSFPRMQLKYLNLSNNRITTLEAGCFDNLSSSL 194

Query: 153 --INLNLNNTYYIKDLI----------LSYNQISKLNANTFRNLNVFR-LYLKFNKISEI 199
             + LN N    I   I          L  N+I  +   TF+ L+  R L ++ N IS++
Sbjct: 195 LVVKLNRNRMSMIPPKIFKLPHLQFLELKRNRIKIVEGLTFQGLDSLRSLKMQRNGISKL 254

Query: 200 HDFAFNGLNSTLEFLDLENNRLTNINQCF-RNLKKLKYLYLHNNNIEFIQNNTFEHLVNL 258
            D AF GLN+ +E L+LE+N LT +N+ +   L+ L+ LY+  N IE I  + +E    L
Sbjct: 255 KDGAFFGLNN-MEELELEHNNLTRVNKGWLYGLRMLQQLYVSQNAIERISPDAWEFCQRL 313

Query: 259 KSISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
             + LS N+LTR+ +  F+    L  LNLG N
Sbjct: 314 SELDLSYNQLTRLDESAFVGLSLLERLNLGDN 345

Homo sapiens (taxid: 9606)

>sp|O75094|SLIT3_HUMAN Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE=2 SV=3

 Score = 64.7 bits (156), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 90/175 (51%), Gaps = 10/175 (5%)

Query: 124 LSNNYIKEFVIPNRKHIEK--LDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNAN-T 180
            S+    + V P +   E   +D SN  +  I  +L    Y+ DL L+ N++S L A   
Sbjct: 495 FSSECFMDLVCPEKCRCEGTIVDCSNQKLVRIPSHLPE--YVTDLRLNDNEVSVLEATGI 552

Query: 181 FRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLY 238
           F+ L N+ ++ L  NKI E+ + AF+G  S  E + L  N+L  ++ + FR L  LK L 
Sbjct: 553 FKKLPNLRKINLSNNKIKEVREGAFDGAASVQELM-LTGNQLETVHGRVFRGLSGLKTLM 611

Query: 239 LHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLN 291
           L +N I  + N+TF  L +++ +SL  N++T I    F     LS +NL  N  N
Sbjct: 612 LRSNLIGCVSNDTFAGLSSVRLLSLYDNRITTITPGAFTTLVSLSTINLLSNPFN 666

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Homo sapiens (taxid: 9606)

>sp|O75473|LGR5_HUMAN Leucine-rich repeat-containing G-protein coupled receptor 5 OS=Homo sapiens GN=LGR5 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 122/276 (44%), Gaps = 61/276 (22%)

Query: 69  ENLNGFRSILWLNMD--SNLLQ-TLDSLPKTMETLSVANNYLVNYLELNRMT---SLKWI 122
            NL+ F S L L+M+  S LL   L SL + +E L +A N L  Y+     T   SLK +
Sbjct: 62  SNLSVFTSYLDLSMNNISQLLPNPLPSL-RFLEELRLAGNAL-TYIPKGAFTGLYSLKVL 119

Query: 123 VLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNA 178
           +L NN ++      + N + ++ L L  N IS +  +  +  + ++ L L  N ++++  
Sbjct: 120 MLQNNQLRHVPTEALQNLRSLQSLRLDANHISYVPPSCFSGLHSLRHLWLDDNALTEIPV 179

Query: 179 NTFRNLNVFR-LYLKFNKISEIHDFAFNGLNS-----------------------TLEFL 214
             FR+L+  + + L  NKI  I D+AF  L+S                       +LE L
Sbjct: 180 QAFRSLSALQAMTLALNKIHHIPDYAFGNLSSLVVLHLHNNRIHSLGKKCFDGLHSLETL 239

Query: 215 DLENNRLTNINQCFRNLKKLKYLYLHNNN------------------------IEFIQNN 250
           DL  N L       R L  LK L  H+NN                        I+F+  +
Sbjct: 240 DLNYNNLDEFPTAIRTLSNLKELGFHSNNIRSIPEKAFVGNPSLITIHFYDNPIQFVGRS 299

Query: 251 TFEHLVNLKSISLSG-NKLTRIPDFIHNKRLSHLNL 285
            F+HL  L++++L+G +++T  PD      L  L L
Sbjct: 300 AFQHLPELRTLTLNGASQITEFPDLTGTANLESLTL 335

Orphan receptor. Stem cell marker of the intestinal epithelium and the hair follicule. Target gene of Wnt signaling.

Homo sapiens (taxid: 9606)

>sp|D4A7P2|LRRT2_RAT Leucine-rich repeat transmembrane neuronal protein 2 OS=Rattus norvegicus GN=Lrrtm2 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 80/145 (55%), Gaps = 5/145 (3%)

Query: 143 LDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIH 200
           L L +N IST+  +     Y +K+LILS N+I  L   TF  L N+  L L FN++S +H
Sbjct: 90  LHLDHNQISTVKEDAFQGLYKLKELILSSNKIFYLPNTTFTQLINLQNLDLSFNQLSSLH 149

Query: 201 DFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK 259
              F GL   L+ L L +N L  I  + F + + L++L L  N +  +  N F  L+ L+
Sbjct: 150 PELFYGLRK-LQTLHLRSNSLRTIPVRLFWDCRSLEFLDLSTNRLRSLARNGFAGLIKLR 208

Query: 260 SISLSGNKLTRIPDFIHNKRLSHLN 284
            + L  N+LT+I +F H  RLS L+
Sbjct: 209 ELHLEHNQLTKI-NFAHFLRLSSLH 232

Involved in the development and maintenance of excitatory synapse in the vertebrate nervous system. Regulates surface expression of AMPA receptors. Acts as a ligand for the presynaptic receptors NRXN1-A and NRXN1-B.

Rattus norvegicus (taxid: 10116)

>sp|Q8BGA3|LRRT2_MOUSE Leucine-rich repeat transmembrane neuronal protein 2 OS=Mus musculus GN=Lrrtm2 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 80/145 (55%), Gaps = 5/145 (3%)

Query: 143 LDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIH 200
           L L +N IST+  +     Y +K+LILS N+I  L   TF  L N+  L L FN++S +H
Sbjct: 90  LHLDHNQISTVKEDAFQGLYKLKELILSSNKIFYLPNTTFTQLINLQNLDLSFNQLSSLH 149

Query: 201 DFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK 259
              F GL   L+ L L +N L  I  + F + + L++L L  N +  +  N F  L+ L+
Sbjct: 150 PELFYGLRK-LQTLHLRSNSLRTIPVRLFWDCRSLEFLDLSTNRLRSLARNGFAGLIKLR 208

Query: 260 SISLSGNKLTRIPDFIHNKRLSHLN 284
            + L  N+LT+I +F H  RLS L+
Sbjct: 209 ELHLEHNQLTKI-NFAHFLRLSSLH 232

Involved in the development and maintenance of excitatory synapse in the vertebrate nervous system. Regulates surface expression of AMPA receptors. Acts as a ligand for the presynaptic receptors NRXN1-A and NRXN1-B.

Mus musculus (taxid: 10090)

>sp|O43300|LRRT2_HUMAN Leucine-rich repeat transmembrane neuronal protein 2 OS=Homo sapiens GN=LRRTM2 PE=2 SV=3

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 80/145 (55%), Gaps = 5/145 (3%)

Query: 143 LDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIH 200
           L L +N IST+  +     Y +K+LILS N+I  L   TF  L N+  L L FN++S +H
Sbjct: 90  LHLDHNQISTVKEDAFQGLYKLKELILSSNKIFYLPNTTFTQLINLQNLDLSFNQLSSLH 149

Query: 201 DFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK 259
              F GL   L+ L L +N L  I  + F + + L++L L  N +  +  N F  L+ L+
Sbjct: 150 PELFYGLRK-LQTLHLRSNSLRTIPVRLFWDCRSLEFLDLSTNRLRSLARNGFAGLIKLR 208

Query: 260 SISLSGNKLTRIPDFIHNKRLSHLN 284
            + L  N+LT+I +F H  RLS L+
Sbjct: 209 ELHLEHNQLTKI-NFAHFLRLSSLH 232

Involved in the development and maintenance of excitatory synapse in the vertebrate nervous system. Regulates surface expression of AMPA receptors. Acts as a ligand for the presynaptic receptors NRXN1-A and NRXN1-B.

Homo sapiens (taxid: 9606)

>sp|Q9DE67|LUM_COTJA Lumican OS=Coturnix coturnix japonica GN=LUM PE=2 SV=1

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 118/233 (50%), Gaps = 27/233 (11%)

Query: 87  LQTLDSLPKTMETLSVANNYLVNYLE--LNRMTSLKWIVLSNNY-----IKEFVIPNRKH 139
           L+T+  +P  ++ L + NN + +  E   + +T L+W++L +N+     IK  V    K+
Sbjct: 61  LKTIPIVPSGIKYLYLRNNMIESIEENTFDNVTDLQWLILDHNHLENSKIKGRVFSKLKN 120

Query: 140 IEKLDLS-NNLISTINLNLNNTYYIKDLILSYNQISKLNANTFR---NLNVFRLY---LK 192
           ++KL ++ NNL   +   L  T  + DL LS+N+I+K+N        NL V  L    LK
Sbjct: 121 LKKLHINYNNLTEAVG-PLPKT--LDDLQLSHNKITKVNPGALEGLVNLTVIHLQNNQLK 177

Query: 193 FNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTF 252
            + IS     AF GLNS L +LDL  N+LT +     +   L  LY  NN I  I +  F
Sbjct: 178 ADSISG----AFKGLNSLL-YLDLSFNQLTKLPTGLPH--SLLMLYFDNNQISNIPDEYF 230

Query: 253 EHLVNLKSISLSGNKLT--RIPDFIHN-KRLSHLNLGYNFLNELILESSIVEN 302
           +    L+ + LS NKLT   IP  + N   L  L+L +N L  +   S  +EN
Sbjct: 231 QGFKTLQYLRLSHNKLTDSGIPGNVFNITSLVELDLSFNQLKSIPTVSENLEN 283

Coturnix coturnix japonica (taxid: 93934)

>sp|Q32Q07|LRRN1_RAT Leucine-rich repeat neuronal protein 1 OS=Rattus norvegicus GN=Lrrn1 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 129/261 (49%), Gaps = 26/261 (9%)

Query: 35  EDNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDS 92
           E+NQI+E+   ++  +  + L  L+I  N I  I     +G +++L L+++SN L+ +DS
Sbjct: 127 EENQISEM--TDYCLQDLSNLQELYINHNQISSISANAFSGLKNLLRLHLNSNKLKVIDS 184

Query: 93  L----PKTMETLSVANNYLVNYLELN--RMTSLKWIVLSNNYIKEFVIPNRK-----HIE 141
                   +E L +  N ++  L++N   +++L+ +VL+  Y+ +  IP         +E
Sbjct: 185 RWFDSTPNLEILMIGENPVIGILDMNFRPLSNLRSLVLAGMYLTD--IPGNALVGLDSLE 242

Query: 142 KLDL-SNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLY-LKFNKISEI 199
            L    N LI    L L     +K L L+ N I K+    F+N+   RL  L  N + E+
Sbjct: 243 SLSFYDNKLIKVPQLALQKVPNLKFLDLNKNPIHKIQEGDFKNM--LRLKELGINNMGEL 300

Query: 200 HDFAFNGLNSTLEFLDLE---NNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHL 255
                  L++  E   LE   N +L+ I++  FR++  L+ L L+NN +  +   T E L
Sbjct: 301 VSVDRYALDNLPELTKLEATNNPKLSYIHRLAFRSVPALESLMLNNNALNAVYQKTVESL 360

Query: 256 VNLKSISLSGNKLTRIPDFIH 276
            NL+ IS+  N L R    IH
Sbjct: 361 PNLREISIHSNPL-RCDCVIH 380

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
91079120	1219	PREDICTED: similar to putative GPCR clas	0.784	0.209	0.339	1e-31
242012034	1248	chaoptin, putative [Pediculus humanus co	0.689	0.179	0.391	4e-30
350420805	1257	PREDICTED: slit homolog 3 protein-like [	0.747	0.193	0.388	6e-30
345485654	1230	PREDICTED: chaoptin-like [Nasonia vitrip	0.769	0.203	0.376	2e-29
340724237	1257	PREDICTED: chaoptin-like [Bombus terrest	0.747	0.193	0.384	3e-29
383852914	1318	PREDICTED: chaoptin-like [Megachile rotu	0.747	0.184	0.364	4e-29
307214706	1258	Chaoptin [Harpegnathos saltator]	0.747	0.193	0.346	8e-28
380027546	1240	PREDICTED: chaoptin-like [Apis florea]	0.747	0.195	0.364	1e-27
328777687	1205	PREDICTED: chaoptin-like [Apis mellifera	0.747	0.201	0.364	2e-27
307178582	1206	Chaoptin [Camponotus floridanus]	0.744	0.200	0.343	2e-26

>gi|91079120|ref|XP_975409.1| PREDICTED: similar to putative GPCR class b orphan receptor 1 (AGAP009007-PA) [Tribolium castaneum] gi|270004885|gb|EFA01333.1| chaoptic-like protein [Tribolium castaneum]

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 163/280 (58%), Gaps = 25/280 (8%)

Query: 37  NQIAELETANWSPEIQNKLTTLFIGENHIHQIEN------------LNGFRSILWLNMDS 84
           NQI+ +  + WS  ++N LTTLF+GEN I ++ +            L  F+S++W+N+D 
Sbjct: 114 NQISSI-GSEWS-HVKNTLTTLFLGENDITEVADEQPDHSSKVSHGLREFKSLIWVNLDG 171

Query: 85  NLLQTLD--SLPKTMETLSVANNYLVNY-LEL-NRMTSLKWIVLSNNYIK---EFVIPNR 137
           N +  +   SLP T++T S+++N + N+ LE+ + +  L+W+ L  N+IK   E     +
Sbjct: 172 NRMYKIHKHSLPLTLQTASISHNLIENFPLEIVSGLPHLQWLYLRGNHIKTIPEHTFARK 231

Query: 138 KHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKI 196
             +EK+DL  N + ++  +  N++ YI+DL L++N    L++ +F  L   R+ L +N +
Sbjct: 232 VWLEKIDLGENYLKSLPRSPFNSSVYIRDLNLAFNDFKTLSSQSFAGLQCGRIILSYNML 291

Query: 197 SEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLV 256
            ++    F G+  TLE+LD ++N    I      L  LKYLYL +N +  I    F+   
Sbjct: 292 EDLEIRTFEGIEDTLEYLDFDHNNFQRIPYALGQLNSLKYLYLSSNLLSEIPERAFDTFC 351

Query: 257 -NLKSISLSGNKLTRIP-DFIHN-KRLSHLNLGYNFLNEL 293
            +LK++SLSGN+LTRIP + + N  ++SH N+G+N + E+
Sbjct: 352 SSLKAVSLSGNRLTRIPVETLQNCSKISHFNIGFNEIYEI 391

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012034|ref|XP_002426747.1| chaoptin, putative [Pediculus humanus corporis] gi|212510923|gb|EEB14009.1| chaoptin, putative [Pediculus humanus corporis]

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/235 (39%), Positives = 138/235 (58%), Gaps = 11/235 (4%)

Query: 65  IHQIENLNGFRSILWLNMDSNLLQTL--DSLPKTMETLSVANNYLVNYL--ELNRMTSLK 120
           ++ +++   F S+ W+N+D N L T+  +SLP T++TLS ++N+L ++    + +M SL 
Sbjct: 174 VYNVQSFADFESLTWINLDDNKLTTIPENSLPITLQTLSASHNFLSHFPMEAIEKMPSLS 233

Query: 121 WIVLSNNYIKEFVIPNRKH---IEKLDLSNNLISTINLNL-NNTYYIKDLILSYNQISKL 176
           W+ L+ NYI+       KH   ++KLDL  N I  +   + N +  IKDL+L +N I  L
Sbjct: 234 WLYLNGNYIENIPHVGFKHKTKLDKLDLRENDIRELTKTIFNGSITIKDLLLDFNYIQTL 293

Query: 177 NANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKY 236
               FR LN+  L++  N++ EI   +F GL   LE LDLENN L  I +  + LK+LK 
Sbjct: 294 PPQVFRGLNLRSLHMTNNRLKEISSKSFIGLGPYLELLDLENNYLNGIPKALKQLKRLKL 353

Query: 237 LYLHNNNIEFIQNNTFEHLVN-LKSISLSGNKLTRIP--DFIHNKRLSHLNLGYN 288
            Y+ NNNI  I ++ FE   N LK++SL+ N L  IP        +LSHLN+GYN
Sbjct: 354 FYIPNNNITEINDDDFESFSNVLKALSLARNNLDFIPFNALRDCVKLSHLNIGYN 408

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350420805|ref|XP_003492631.1| PREDICTED: slit homolog 3 protein-like [Bombus impatiens]

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 99/255 (38%), Positives = 143/255 (56%), Gaps = 12/255 (4%)

Query: 45  ANWSPEIQNKLTTLFIGENHIHQIENL-NGFRSILWLNMDSNLLQTL--DSLPKTMETLS 101
            +W    ++ LT  F G+N I +I  + N F S+ WLN+D+N ++ L  DSLP  + TLS
Sbjct: 168 GDWG-HSKDALTNAFFGDNSIIEIPKIFNTFESLAWLNLDNNNIEELLEDSLPPNIHTLS 226

Query: 102 VANNYLVNYLE-LNRMTSLKWIVLSNNYIKEFVIPN--RKHIEKLDLSNNLISTIN-LNL 157
           + +N L ++   L  +  L W+ L  N  K   +P+    ++E +D+S N I  I  L+L
Sbjct: 227 LNSNLLKSFPSSLKSLRHLTWLYLRGNDFKSLELPDFQSSNLELVDVSENCIEWIGTLSL 286

Query: 158 NN-TYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDL 216
            N T  IKD  L  N+++ L A  F  L   R++L  N I  + D AF GL   LE+L+L
Sbjct: 287 TNRTLKIKDFNLDSNKLTSLTAGIFDGLETKRIHLSSNTIKNVDDDAFRGLEDMLEYLNL 346

Query: 217 ENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTF-EHLVNLKSISLSGNKLTRIP--D 273
           ENN L+++      LKKL YLYL NN+I  I  + F E   NL+++SL+ N L  +P   
Sbjct: 347 ENNDLSSVPAAVSRLKKLSYLYLANNDIRNISGDAFYEFAENLRALSLATNSLDAVPVAA 406

Query: 274 FIHNKRLSHLNLGYN 288
               +RL HLNLGYN
Sbjct: 407 VTRCQRLLHLNLGYN 421

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485654|ref|XP_001604537.2| PREDICTED: chaoptin-like [Nasonia vitripennis]

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/263 (37%), Positives = 152/263 (57%), Gaps = 13/263 (4%)

Query: 37  NQIAELETANWSPEIQNKLTTLFIGENHIHQI-ENLNGFRSILWLNMDSNLLQTL--DSL 93
           N +  LE  +W   + + L   F G+N I  I  + + F +++WLN+D+N ++ L   +L
Sbjct: 144 NHLTTLE-GDWG-YVSDTLLHAFFGDNSISAIPRSFSTFATLIWLNLDNNNIEQLQESTL 201

Query: 94  PKTMETLSVANNYLVNYLE-LNRMTSLKWIVLSNNYIKEFVIPNRKH--IEKLDLSNNLI 150
           P  + TLS+  N L      L  +  L W+ L  N IK    P+ K+  IE +DLS N I
Sbjct: 202 PPNLVTLSLNTNLLKALPSCLAELHDLAWLYLRGNDIKHLEFPDFKNPNIEMIDLSENSI 261

Query: 151 STIN-LNLNN-TYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLN 208
            +I  L+ +N T  +KDL LS N++S L  ++F N++V R++L  NKI  + D  F+GL 
Sbjct: 262 ESITYLSFSNKTLRVKDLNLSGNRLSNLGKSSFLNMSVRRIHLSLNKIQSMDDNVFDGLE 321

Query: 209 STLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVN-LKSISLSGNK 267
            +LE+L+LENN LT + +  R+L++L YLYL NN +  + N++F      LK++SL+ N+
Sbjct: 322 ESLEYLNLENNELTMLPKAVRSLRRLSYLYLANNAVRELYNDSFADFGQELKALSLATNQ 381

Query: 268 LTRIP--DFIHNKRLSHLNLGYN 288
              +P    I    L HLNLGYN
Sbjct: 382 FETVPVDALIGCSNLLHLNLGYN 404

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724237|ref|XP_003400490.1| PREDICTED: chaoptin-like [Bombus terrestris]

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/255 (38%), Positives = 142/255 (55%), Gaps = 12/255 (4%)

Query: 45  ANWSPEIQNKLTTLFIGENHIHQIENL-NGFRSILWLNMDSNLLQTL--DSLPKTMETLS 101
            +W    ++ LT  F G+N I +I  + N F S+ WLN+D+N ++ L   SLP  + TLS
Sbjct: 168 GDWG-HSKDALTNAFFGDNSIIEIPKIFNTFESLAWLNLDNNNIEELLEGSLPPNIHTLS 226

Query: 102 VANNYLVNYLE-LNRMTSLKWIVLSNNYIKEFVIPN--RKHIEKLDLSNNLISTIN-LNL 157
           + +N L ++   L  +  L W+ L  N  K   +P+    ++E +D+S N I  I  L+L
Sbjct: 227 LNSNLLKSFPSSLKSLRHLTWLYLRGNDFKSLELPDFQSSNLELVDVSENCIEWIGTLSL 286

Query: 158 NN-TYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDL 216
            N T  IKD  L  N+++ L A  F  L   R++L  N I  + D AF GL   LE+L+L
Sbjct: 287 TNRTLKIKDFNLDSNKLTSLTAGIFDGLETKRIHLSSNSIKNVDDDAFRGLEDMLEYLNL 346

Query: 217 ENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTF-EHLVNLKSISLSGNKLTRIP--D 273
           ENN L+++      LKKL YLYL NN+I  I  + F E   NL+++SL+ N L  +P   
Sbjct: 347 ENNDLSSVPAAVSRLKKLSYLYLANNDIRNISGDAFYEFAENLRALSLATNSLDAVPVAA 406

Query: 274 FIHNKRLSHLNLGYN 288
               +RL HLNLGYN
Sbjct: 407 VTRCQRLLHLNLGYN 421

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852914|ref|XP_003701970.1| PREDICTED: chaoptin-like [Megachile rotundata]

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/255 (36%), Positives = 145/255 (56%), Gaps = 12/255 (4%)

Query: 45  ANWSPEIQNKLTTLFIGENHIHQIENL-NGFRSILWLNMDSNLLQTL--DSLPKTMETLS 101
            +W    ++ LT  F G+N I +I  + + F S++WLN+D+N ++ +  +SLP  M TLS
Sbjct: 236 GDWG-HTRDTLTNAFFGDNSIIEIPKVFSTFESLVWLNLDNNNIEEISEESLPPNMHTLS 294

Query: 102 VANNYLVNYLE-LNRMTSLKWIVLSNNYIKEFVIPN--RKHIEKLDLSNNLISTINLNL- 157
           + +N L ++ + L  +  L W+ L  N  K   +P+    ++E +D+S N I  I+ ++ 
Sbjct: 295 LNSNLLKSFPQSLKMLKDLTWLYLRGNDFKNLELPDFQSSNLELVDVSENCIEWIHTSIP 354

Query: 158 -NNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDL 216
            N +  IKD  L  N+++ L A  F  L   R++L  N I  I + AF GL + LE+L+L
Sbjct: 355 NNRSLKIKDFNLDSNKLTSLTAGMFDRLETKRIHLSSNSIKNIDEDAFRGLENVLEYLNL 414

Query: 217 ENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLV-NLKSISLSGNKLTRIP--D 273
           ENN L N+     +L+KL YLYL NN+I  I    F+    NL+++SL+ N L  +P   
Sbjct: 415 ENNDLPNVPSAVGHLRKLSYLYLANNDIRNISGEAFQEFAENLRALSLATNSLDAVPVAA 474

Query: 274 FIHNKRLSHLNLGYN 288
               +RL HLNLGYN
Sbjct: 475 LSRCQRLLHLNLGYN 489

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214706|gb|EFN89635.1| Chaoptin [Harpegnathos saltator]

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/254 (34%), Positives = 140/254 (55%), Gaps = 11/254 (4%)

Query: 45  ANWSPEIQNKLTTLFIGENHIHQIENL-NGFRSILWLNMDSNLLQTL--DSLPKTMETLS 101
            +W    ++ L+  F G+N I ++  L + F +++WLN+DSN ++    + LP  M TLS
Sbjct: 177 GDWG-RTRDTLSNAFFGDNSITEVPRLFSSFGALVWLNVDSNNIEEFPKECLPPNMHTLS 235

Query: 102 VANNYLVNYLE-LNRMTSLKWIVLSNNYIKEFVIPNRKH--IEKLDLSNNLISTINLNLN 158
           + NN L  + + L  + SL W+ +  N I    +P+ +   +E +D+S N I  +   L+
Sbjct: 236 INNNLLKEFPQSLGGLKSLTWLYMRGNNIGYLELPDFRSSSLELIDISENSIEWMKTTLS 295

Query: 159 N-TYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLE 217
           N T  + D  L+ N+++ L    F  L + RL+L  N +  + D AF+GL   LE+L+LE
Sbjct: 296 NRTLKVVDFNLAGNKLTSLPGRMFDRLEIKRLHLSSNGVRNVDDEAFHGLEDILEYLNLE 355

Query: 218 NNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLV-NLKSISLSGNKLTRIP--DF 274
           NN L+ +      L+ L YLYL NN I  I +  F+    +LK++SL+ N L  +P    
Sbjct: 356 NNDLSAVPSAVSQLRTLSYLYLANNEIRNISSEAFQEFAEHLKALSLATNSLDAVPVAAL 415

Query: 275 IHNKRLSHLNLGYN 288
              +RL HLNLGYN
Sbjct: 416 SRCQRLLHLNLGYN 429

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027546|ref|XP_003697483.1| PREDICTED: chaoptin-like [Apis florea]

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/255 (36%), Positives = 142/255 (55%), Gaps = 12/255 (4%)

Query: 45  ANWSPEIQNKLTTLFIGENHIHQIENL-NGFRSILWLNMDSNLLQTL--DSLPKTMETLS 101
            +W    ++ LT  F G+N I +I  + N F S++WLN+D+N ++ +  D+LP  + TLS
Sbjct: 158 GDWG-HSKDALTNAFFGDNSIIEIPKIFNTFESLVWLNLDNNNIEEISEDTLPPNIHTLS 216

Query: 102 VANNYLVNYLE-LNRMTSLKWIVLSNNYIKEFVIPN--RKHIEKLDLSNNLISTINLN-- 156
           + +N L ++   L  +  L W+ L  N  K   +P+     +E +D+S N I  I  +  
Sbjct: 217 LNSNLLKSFPSTLKFLKQLTWLYLRGNDFKNLELPDFQTSDLELVDVSENCIEWIRTSSL 276

Query: 157 LNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDL 216
            N T  IK+  L  N+++ L A  F +L + R++L  N I  + D AF GL   LE+L+L
Sbjct: 277 ANRTLKIKEFNLDSNKLTLLPAGIFDHLEIKRIHLSSNSIKNVDDDAFRGLEDMLEYLNL 336

Query: 217 ENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTF-EHLVNLKSISLSGNKLTRIP--D 273
           ENN L ++      L+KL YLYL NN+I  I  + F E   NL+++SL+ N L  +P   
Sbjct: 337 ENNDLPSVPGAVSRLRKLSYLYLANNDIRNISGDIFHEFGENLRALSLATNSLDAVPVAA 396

Query: 274 FIHNKRLSHLNLGYN 288
               +RL HLNLGYN
Sbjct: 397 LSRCQRLLHLNLGYN 411

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777687|ref|XP_001121376.2| PREDICTED: chaoptin-like [Apis mellifera]

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/255 (36%), Positives = 142/255 (55%), Gaps = 12/255 (4%)

Query: 45  ANWSPEIQNKLTTLFIGENHIHQIENL-NGFRSILWLNMDSNLLQTL--DSLPKTMETLS 101
            +W    ++ LT  F G+N I +I  + N F S++WLN+D+N ++ +  D+LP  + TLS
Sbjct: 123 GDWG-HSKDALTNAFFGDNSIIEIPKIFNTFESLVWLNLDNNNIEEISEDTLPPNIHTLS 181

Query: 102 VANNYLVNYLE-LNRMTSLKWIVLSNNYIKEFVIPN--RKHIEKLDLSNNLISTINLNL- 157
           + +N L ++   L  +  L W+ L  N  K   +P+     +E +D+S N I  I  +  
Sbjct: 182 LNSNLLKSFPSTLKFLKQLTWLYLRGNDFKNLELPDFQTSDLELVDVSENCIEWIRTSSL 241

Query: 158 -NNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDL 216
            N T  IK+  L  N+++ L A  F +L + R++L  N I  + D AF GL   LE+L+L
Sbjct: 242 SNRTLKIKEFNLDSNKLTLLPAGIFDHLEIKRIHLSSNSIKNVDDDAFRGLEDMLEYLNL 301

Query: 217 ENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTF-EHLVNLKSISLSGNKLTRIP--D 273
           ENN L ++      L+KL YLYL NN+I  I  + F E   NL+++SL+ N L  +P   
Sbjct: 302 ENNDLPSVPGAVSRLRKLSYLYLANNDIRNISGDIFHEFGENLRALSLATNSLDAVPVAA 361

Query: 274 FIHNKRLSHLNLGYN 288
               +RL HLNLGYN
Sbjct: 362 LSRCQRLLHLNLGYN 376

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178582|gb|EFN67258.1| Chaoptin [Camponotus floridanus]

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/256 (34%), Positives = 137/256 (53%), Gaps = 14/256 (5%)

Query: 45  ANWSPEIQNKLTTLFIGENHIHQIENL-NGFRSILWLNMDSNLLQTL--DSLPKTMETLS 101
            +W    +  LT  F G+N I ++  + + F +++WLN+D+N ++    DSLP  M TLS
Sbjct: 124 GDWG-RTKETLTNAFFGDNSITEVPRIFSSFAALVWLNLDNNNIEKFSEDSLPPNMHTLS 182

Query: 102 VANNYLVNYLE-LNRMTSLKWIVLSNNYIKEFVIPNRKH--IEKLDLSNN---LISTINL 155
           + NN L  + + L  +  L W+ +  N +K   +P+ +   +E +D+S N    I T  L
Sbjct: 183 INNNLLKEFPQSLRDLKKLTWLYMRGNELKYLELPDFRSSGLELIDVSENSIEWIKTPTL 242

Query: 156 NLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLD 215
           N N T  ++D  L+ N+++ L    F  L   R++L  N I  +   AF+GL   +E+L+
Sbjct: 243 N-NRTLKVRDFNLAGNKLASLPGRMFDRLETRRIHLSSNSIRNVDSEAFHGLEDIVEYLN 301

Query: 216 LENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLV-NLKSISLSGNKLTRIP-- 272
           LENN L  +      L+ L YLYL NN I  I    F+    +LK++SL+ N L  +P  
Sbjct: 302 LENNDLPAVPTAISRLRILSYLYLANNEIRNISGEAFQEFAEHLKALSLATNSLDAVPVA 361

Query: 273 DFIHNKRLSHLNLGYN 288
                +RL HLNLGYN
Sbjct: 362 ALSRCQRLLHLNLGYN 377

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
FB|FBgn0028888	1443	CG4168 [Drosophila melanogaste	0.670	0.151	0.293	5.6e-19
UNIPROTKB|P51890	343	LUM "Lumican" [Gallus gallus (	0.683	0.647	0.273	2e-10
WB|WBGene00002282	773	let-4 [Caenorhabditis elegans	0.763	0.320	0.239	3.3e-10
FB|FBgn0034083	1252	lbk "lambik" [Drosophila melan	0.701	0.182	0.235	1.4e-09
UNIPROTKB|Q86VH5	581	LRRTM3 "Leucine-rich repeat tr	0.390	0.218	0.340	7.5e-08
MGI|MGI:2389177	582	Lrrtm3 "leucine rich repeat tr	0.390	0.218	0.340	7.5e-08
RGD|1304866	582	Lrrtm3 "leucine rich repeat tr	0.390	0.218	0.340	7.5e-08
RGD|1564145	716	Lrrn1 "leucine rich repeat neu	0.729	0.331	0.270	7.7e-08
UNIPROTKB|F1SQ09	341	LUM "Uncharacterized protein"	0.68	0.648	0.262	7.8e-08
MGI|MGI:2443718	1054	Lrig2 "leucine-rich repeats an	0.738	0.227	0.263	1e-07

FB|FBgn0028888 CG4168 [Drosophila melanogaster (taxid:7227)]

 Score = 242 (90.2 bits), Expect = 5.6e-19, P = 5.6e-19
 Identities = 69/235 (29%), Positives = 115/235 (48%)

Query:    75 RSILWLNMDSNLLQTL--DSLPKTMETLSVANNYLVNYLE--LNRMTSLKWIVLSNNYI- 129
             + +LWL++ +N +  +  + LP+++ T+ +++N L  + +    ++  L+ + L +N I 
Sbjct:   377 QKLLWLDLSNNRIYHVAGNYLPRSLVTMDLSSNLLTVFPQQLFEQLPELRIVSLRDNLIR 436

Query:   130 ----KEFVI-PNRKHIEKLDXXXXXXXXXXXXXXXXYY----IKDLILSYNQISKLNANT 180
                 KE  + P R H+E+LD                 Y    ++ L L  N +++L    
Sbjct:   437 SVQWKELQVRPLRMHLERLDLGQNCIENLESDYFQQNYSDVHLRALNLEQNFVTQLPEAV 496

Query:   181 FRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRXXXXXXXXXXX 240
             F+   +  L L FN IS +H  AF GL  TLE+LDLE NRLT +                
Sbjct:   497 FKATGIAHLVLAFNAISRVHPSAFEGLTETLEYLDLERNRLTTVPVALSSLHHLKYLYLT 556

Query:   241 XXXIEFIQNNTFEHLVNLKSISLSGNKLTRIPDF-IHN-KRLSHLNLGYNFLNEL 293
                I  + NN      NL+ +SLSGN  + IP   + N  +LS+LN+GYN + ++
Sbjct:   557 SNQISQL-NNLPSFTENLRVLSLSGNNFSMIPVLGLKNYTQLSYLNMGYNSITDI 610

GO:0004930 "G-protein coupled receptor activity" evidence=ISS

UNIPROTKB|P51890 LUM "Lumican" [Gallus gallus (taxid:9031)]

 Score = 169 (64.5 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 66/241 (27%), Positives = 114/241 (47%)

Query:    83 DSNLLQTLDSLPKTMETLSVANNYLVNYLELN---RMTSLKWIVLSNNYIKEFVIPNR-- 137
             D+  L+T+  +P  ++ L + NN ++  +E N    +T L+W++L +N+++   I  R  
Sbjct:    57 DNLKLKTIPIVPSGIKYLYLRNN-MIEAIEENTFDNVTDLQWLILDHNHLENSKIKGRVF 115

Query:   138 ---KHIEKLDXXXXXXXXXXXXXXXXYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKF 193
                K+++KL                   + DL LS+N+I+K+N      L N+  ++L+ 
Sbjct:   116 SKLKNLKKLHINYNNLTEAVGPLPKT--LDDLQLSHNKITKVNPGALEGLVNLTVIHLQN 173

Query:   194 NKI-SEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRXXXXXXXXXXXXXXIEFIQNNTF 252
             N++ ++    AF GLNS L +LDL  N+LT +                   I  I +  F
Sbjct:   174 NQLKTDSISGAFKGLNSLL-YLDLSFNQLTKLPTGLPHSLLMLYFDNNQ--ISNIPDEYF 230

Query:   253 EHLVNLKSISLSGNKLTR--IPDFIHN-KRLSHLNLGYNFLNELILESSIVENEIIDQNM 309
             +    L+ + LS NKLT   IP  + N   L  L+L +N L  +   S  +EN  +  N 
Sbjct:   231 QGFKTLQYLRLSHNKLTDSGIPGNVFNITSLVELDLSFNQLKSIPTVSENLENFYLQVNK 290

Query:   310 L 310
             +
Sbjct:   291 I 291

GO:0007601 "visual perception" evidence=IEA

GO:0030199 "collagen fibril organization" evidence=IEA

GO:0005518 "collagen binding" evidence=IEA

GO:0005583 "fibrillar collagen" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

WB|WBGene00002282 let-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 173 (66.0 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 64/267 (23%), Positives = 120/267 (44%)

Query:    37 NQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLP 94
             N+I  + T+ +   ++N + T+ +G N++  + +  + G + +  L++  N ++ LD+L 
Sbjct:   169 NKIFSIHTSTFQ-NVKNSIQTINLGHNNMTAVPSSAIRGLKQLQSLHLHKNRIEQLDAL- 226

Query:    95 KTMETLSVAN--NYLVNYL-ELNRMT-----SLKWIVLSNNYIKE---FVIPNRKHIEKL 143
                  L V N  N   N + ELNR       SL+++ LS N I +   +     + +E L
Sbjct:   227 -NFLNLPVLNLLNLAGNQIHELNRQAFLNVPSLRYLYLSGNKITKLTAYQFQTFEQLEML 285

Query:   144 DXXXXXXXXXXXXXXXXY-YIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDF 202
             D                   ++ L L++N+IS +++N F N ++  L L  N++  +   
Sbjct:   286 DLTNNEIGAIPANSLSGLKQLRQLYLAHNKISNISSNAFTNSSIVVLVLSSNELKTLTAG 345

Query:   203 AFNGLNSTLEFLDLENNRLTNINQ-CFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSI 261
               +GL + L+ +   +N++  IN+  F               +  I   TF   +NL  +
Sbjct:   346 IISGLPN-LQQVSFRDNQIKTINRNAFYDAASLVMLDLAKNQLTEIAPTTFLAQLNLLLV 404

Query:   262 SLSGNKLTRIPDFIHNKRLSHLNLGYN 288
              LS NKL + P    N R+  + L  N
Sbjct:   405 DLSENKLPKTPYSAFNSRVGTVLLKEN 431

GO:0016021 "integral to membrane" evidence=IEA

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IGI;IMP

GO:0002064 "epithelial cell development" evidence=IMP

GO:0035150 "regulation of tube size" evidence=IMP

GO:0045177 "apical part of cell" evidence=IDA

FB|FBgn0034083 lbk "lambik" [Drosophila melanogaster (taxid:7227)]

 Score = 170 (64.9 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 57/242 (23%), Positives = 116/242 (47%)

Query:    87 LQTLDSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIK---EFV-IPNRKHI 140
             L+ +  LP  ++TL +ANN L     LE+  + +L  + L  N ++   +F+ +   KH+
Sbjct:   283 LERVPVLPSYVQTLHLANNKLNDTTVLEIRNLLNLTKVSLKRNLLEVIPKFIGLSGLKHL 342

Query:   141 EKLDXXXXXXXXXXXXXXXXYYIKDLILSYNQISKLNANTF-RNLNVFRLYLKFNKISEI 199
                +                  ++ L LS N++  +  N+F ++ N+  L L FN+I+ +
Sbjct:   343 VLANNHITSISSESLAALPL--LRTLDLSRNKLHTIELNSFPKSNNLVHLILSFNEITNV 400

Query:   200 HDFAFNGLNSTLEFLDLENNRLTNIN-QCFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNL 258
             ++ +F  LN+  + L+L NNRL+ +  + F+              +E I  +TF  L ++
Sbjct:   401 NEHSFATLNNLTD-LELSNNRLSTLPIRVFKNLNQLKKLALNFNQLE-INWSTFRGLESM 458

Query:   259 KSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAV 316
             K++ L  NK+  + D  F    ++  ++L  N ++ L  +      ++   N+ FN+ + 
Sbjct:   459 KNLQLKSNKIRALQDGVFYVMHKIETIDLAMNQISSLSRQGLFNLTKLRHLNLSFNAISR 518

Query:   317 ME 318
             +E
Sbjct:   519 IE 520

GO:0048477 "oogenesis" evidence=IMP

GO:0008407 "chaeta morphogenesis" evidence=IMP

UNIPROTKB|Q86VH5 LRRTM3 "Leucine-rich repeat transmembrane neuronal protein 3" [Homo sapiens (taxid:9606)]

 Score = 151 (58.2 bits), Expect = 7.5e-08, P = 7.5e-08
 Identities = 45/132 (34%), Positives = 61/132 (46%)

Query:   166 LILSYNQISKLNANTFRNLNVFR-LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN- 223
             L L YN + KL  N F+ LN    LYL  N IS I + AFNG+    E + L +NR++  
Sbjct:    66 LSLRYNSLQKLKYNQFKGLNQLTWLYLDHNHISNIDENAFNGIRRLKELI-LSSNRISYF 124

Query:   224 INQCFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHN--KRLS 281
             +N  FR              +  + +  F  L  L S+ L  N L  IP  I    + L 
Sbjct:   125 LNNTFRPVTNLRNLDLSYNQLHSLGSEQFRGLRKLLSLHLRSNSLRTIPVRIFQDCRNLE 184

Query:   282 HLNLGYNFLNEL 293
              L+LGYN +  L
Sbjct:   185 LLDLGYNRIRSL 196

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

MGI|MGI:2389177 Lrrtm3 "leucine rich repeat transmembrane neuronal 3" [Mus musculus (taxid:10090)]

 Score = 151 (58.2 bits), Expect = 7.5e-08, P = 7.5e-08
 Identities = 45/132 (34%), Positives = 61/132 (46%)

Query:   166 LILSYNQISKLNANTFRNLNVFR-LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN- 223
             L L YN + KL  N F+ LN    LYL  N IS I + AFNG+    E + L +NR++  
Sbjct:    66 LSLRYNSLQKLKYNQFKGLNQLTWLYLDHNHISNIDENAFNGIRRLKELI-LSSNRISYF 124

Query:   224 INQCFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHN--KRLS 281
             +N  FR              +  + +  F  L  L S+ L  N L  IP  I    + L 
Sbjct:   125 LNNTFRPVTNLRNLDLSYNQLHSLGSEQFRGLRKLLSLHLRSNSLRTIPVRIFQDCRNLE 184

Query:   282 HLNLGYNFLNEL 293
              L+LGYN +  L
Sbjct:   185 LLDLGYNRIRSL 196

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISS

GO:0030054 "cell junction" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:1902004 "positive regulation of beta-amyloid formation" evidence=ISO;IMP

RGD|1304866 Lrrtm3 "leucine rich repeat transmembrane neuronal 3" [Rattus norvegicus (taxid:10116)]

 Score = 151 (58.2 bits), Expect = 7.5e-08, P = 7.5e-08
 Identities = 45/132 (34%), Positives = 61/132 (46%)

Query:   166 LILSYNQISKLNANTFRNLNVFR-LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN- 223
             L L YN + KL  N F+ LN    LYL  N IS I + AFNG+    E + L +NR++  
Sbjct:    66 LSLRYNSLQKLKYNQFKGLNQLTWLYLDHNHISNIDENAFNGIRRLKELI-LSSNRISYF 124

Query:   224 INQCFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHN--KRLS 281
             +N  FR              +  + +  F  L  L S+ L  N L  IP  I    + L 
Sbjct:   125 LNNTFRPVTNLRNLDLSYNQLHSLGSEQFRGLRKLLSLHLRSNSLRTIPVRIFQDCRNLE 184

Query:   282 HLNLGYNFLNEL 293
              L+LGYN +  L
Sbjct:   185 LLDLGYNRIRSL 196

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

RGD|1564145 Lrrn1 "leucine rich repeat neuronal 1" [Rattus norvegicus (taxid:10116)]

 Score = 152 (58.6 bits), Expect = 7.7e-08, P = 7.7e-08
 Identities = 70/259 (27%), Positives = 118/259 (45%)

Query:    35 EDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE-N-LNGFRSILWLNMDSNLLQTLDS 92
             E+NQI+E+ T     ++ N L  L+I  N I  I  N  +G +++L L+++SN L+ +DS
Sbjct:   127 EENQISEM-TDYCLQDLSN-LQELYINHNQISSISANAFSGLKNLLRLHLNSNKLKVIDS 184

Query:    93 --LPKT--METLSVANNYLVNYLELN-R-MTSLKWIVLSNNYIKEF---VIPNRKHIEKL 143
                  T  +E L +  N ++  L++N R +++L+ +VL+  Y+ +     +     +E L
Sbjct:   185 RWFDSTPNLEILMIGENPVIGILDMNFRPLSNLRSLVLAGMYLTDIPGNALVGLDSLESL 244

Query:   144 DXXXXXXXXXXXXXXXXY-YIKDLILSYNQISKLNANTFRNLNVFRLY-LKFNKISEIHD 201
                                 +K L L+ N I K+    F+N+   RL  L  N + E+  
Sbjct:   245 SFYDNKLIKVPQLALQKVPNLKFLDLNKNPIHKIQEGDFKNM--LRLKELGINNMGELVS 302

Query:   202 FAFNGLNSTLEFLDLE--NN-RLTNINQ-CFRXXXXXXXXXXXXXXIEFIQNNTFEHLVN 257
                  L++  E   LE  NN +L+ I++  FR              +  +   T E L N
Sbjct:   303 VDRYALDNLPELTKLEATNNPKLSYIHRLAFRSVPALESLMLNNNALNAVYQKTVESLPN 362

Query:   258 LKSISLSGNKLTRIPDFIH 276
             L+ IS+  N L R    IH
Sbjct:   363 LREISIHSNPL-RCDCVIH 380

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1SQ09 LUM "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 147 (56.8 bits), Expect = 7.8e-08, P = 7.8e-08
 Identities = 63/240 (26%), Positives = 108/240 (45%)

Query:    83 DSNLLQTLDSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPNR--- 137
             D   L+++  +P  ++ L + NN +  ++      +T L+W++L +N ++   I  R   
Sbjct:    57 DELKLKSVPMVPPGIKYLYLRNNQIDHIDDKAFENVTDLEWLILDHNLLENSKIKGRVFS 116

Query:   138 --KHIEKLDXXXXXXXXXXXXXXXXYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFN 194
               K ++KL                   + DL L+ N+ISKL +  F  L N+  ++L+ N
Sbjct:   117 KLKQLKKLHINYNNLTESVGPLPKS--LVDLQLTNNKISKLGS--FDGLVNLTFIHLQHN 172

Query:   195 KISE-IHDFAFNGLNSTLEFLDLENNRLTNINQCFRXXXXXXXXXXXXXXIEFIQNNTFE 253
             ++ E     AF GL   LE+LDL  N++T +                   I  I +  F+
Sbjct:   173 QLKEDAVSAAFRGLKG-LEYLDLSFNQMTKLPSGLPVSLLTLYLDNNK--ISNIPDEYFK 229

Query:   254 HLVNLKSISLSGNKL--TRIPDFIHN-KRLSHLNLGYNFLNELILESSIVENEIIDQNML 310
             H   L+ + LS N+L  + IP    N   L  L+L YN L  +   +  +EN  ++ N L
Sbjct:   230 HFSGLQYLRLSHNELADSGIPGNSFNLSSLLELDLSYNKLKNIPTVNENLENYYLEVNEL 289

GO:0031012 "extracellular matrix" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005583 "fibrillar collagen" evidence=IEA

GO:0005518 "collagen binding" evidence=IEA

GO:0030199 "collagen fibril organization" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

MGI|MGI:2443718 Lrig2 "leucine-rich repeats and immunoglobulin-like domains 2" [Mus musculus (taxid:10090)]

 Score = 153 (58.9 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 69/262 (26%), Positives = 124/262 (47%)

Query:    45 ANWSPEIQNK-LTTLFIGENHIHQIENLNG-FRSILWLNMDSNLLQTLDS----LPKTME 98
             +NW+  ++++ L  + +  N + +I        +I  L++  NL+  +++    L   +E
Sbjct:    87 SNWNNTLESQTLQEVKMNYNELTEIPYFGEPTPNITLLSLVHNLIPEINAEAFELYSALE 146

Query:    99 TLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFV------IPNRKHIEKLDXXXXXX 150
             +L +++N +  +      RM SLK++ LSNN I          + +   + KL+      
Sbjct:   147 SLDLSSNIISEIKTSSFPRM-SLKYLNLSNNRISTLEAGCFDNLSDSLLVVKLNRNRISM 205

Query:   151 XXXXXXXXXXYYIKDLILSYNQISKLNANTFRNLNVFR-LYLKFNKISEIHDFAFNGLNS 209
                        +++ L L  N+I  +   TF+ L+  R L ++ N IS++ D AF GLN+
Sbjct:   206 IPPKVFKLP--HLQFLELKRNRIKIVEGLTFQGLDSLRSLKMQRNGISKLKDGAFFGLNN 263

Query:   210 TLEFLDLENNRLTNINQCFRXXXXXXXXXXXXX-XIEFIQNNTFEHLVNLKSISLSGNKL 268
              +E L+LE+N LT +N+ +                IE I  + +E    L  + LS N+L
Sbjct:   264 -MEELELEHNNLTGVNKGWLYGLRMLQQLYMSQNAIEKISPDAWEFCQRLSELDLSYNQL 322

Query:   269 TRIPD--FIHNKRLSHLNLGYN 288
             TR+ +  F+    L  LNLG N
Sbjct:   323 TRLDESAFVGLSLLERLNLGDN 344

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	325
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	0.004

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 53.7 bits (130), Expect = 9e-10
 Identities = 28/59 (47%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 211 LEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL 268
           L+ LDL NNRLT I    F+ L  LK L L  NN+  I    F  L +L+S+ LSGN L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 57.3 bits (138), Expect = 3e-09
 Identities = 62/202 (30%), Positives = 100/202 (49%), Gaps = 6/202 (2%)

Query: 104 NNYLVNYLELNRMTSLKWIVLSNNYIKE---FVIPNRKHIEKLDLSNNLISTINLNLNNT 160
           N    N  EL  +T+L  + L NN I +    +   + ++++LDLS+N I ++   L N 
Sbjct: 103 NRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNL 162

Query: 161 YYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNR 220
             +K+L LS+N +S L        N+  L L  NKIS++       L S LE LDL NN 
Sbjct: 163 PNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEI--ELLSALEELDLSNNS 220

Query: 221 LTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRL 280
           +  +     NLK L  L L NN +E +   +  +L NL+++ LS N+++ I        L
Sbjct: 221 IIELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISSLGSLTNL 279

Query: 281 SHLNLGYNFLNELILESSIVEN 302
             L+L  N L+  +   +++  
Sbjct: 280 RELDLSGNSLSNALPLIALLLL 301

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 233 KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
            LK L L NN +  I +  F+ L NLK + LSGN LT I    F     L  L+L  N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 188 RLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNI 244
            L L  N+++ I D AF GL + L+ LDL  N LT+I+ + F  L  L+ L L  NN+
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPN-LKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.1 bits (104), Expect = 8e-05
 Identities = 73/222 (32%), Positives = 104/222 (46%), Gaps = 27/222 (12%)

Query: 96  TMETLSVANNYLVNYL--ELNRMTSLKWIVLS-NNYIKEFVIPNR----KHIEKLDLS-N 147
           ++E L++A+N LV  +  EL +M SLKWI L  NN   E  IP        +  LDL  N
Sbjct: 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE--IPYEIGGLTSLNHLDLVYN 246

Query: 148 NLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKIS-EIHDFAFN 205
           NL   I  +L N   ++ L L  N++S     +  +L  +  L L  N +S EI +    
Sbjct: 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306

Query: 206 GLNSTLEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNIEF-IQNNTFEHLVNLKSISL 263
             N  LE L L +N  T  I     +L +L+ L L +N     I  N  +H  NL  + L
Sbjct: 307 LQN--LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDL 363

Query: 264 SGNKLT-RIPDFIHNKRLSHLNLGYNFLNELILESSIVENEI 304
           S N LT  IP+ + +            L +LIL S+ +E EI
Sbjct: 364 STNNLTGEIPEGLCSS---------GNLFKLILFSNSLEGEI 396

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 62/214 (28%), Positives = 99/214 (46%), Gaps = 39/214 (18%)

Query: 97  METLSVANNYLVNYLELNRMT---SLKWIVLSNNY----IKEFVIPNRKHIEKLDLSNNL 149
           ++T++++NN L   +  +  T   SL+++ LSNN     I    IPN   +E LDLSNN+
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN---LETLDLSNNM 151

Query: 150 IS-------------------------TINLNLNNTYYIKDLILSYNQ-ISKLNANTFRN 183
           +S                          I  +L N   ++ L L+ NQ + ++     + 
Sbjct: 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211

Query: 184 LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN-INQCFRNLKKLKYLYLHNN 242
            ++  +YL +N +S    +   GL S L  LDL  N LT  I     NLK L+YL+L+ N
Sbjct: 212 KSLKWIYLGYNNLSGEIPYEIGGLTS-LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270

Query: 243 NIEFIQNNTFEHLVNLKSISLSGNKLT-RIPDFI 275
            +      +   L  L S+ LS N L+  IP+ +
Sbjct: 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV 304

Length = 968

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 8/95 (8%)

Query: 197 SEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHL 255
           + I D+AF   +  L  + + ++ +T+I    F     LK + L  +++  I +  F + 
Sbjct: 1   TSIGDYAFYNCS--LTSITIPSS-VTSIGEYAFSGCTSLKSITL-PSSLTSIGSYAFYNC 56

Query: 256 VNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
            +L SI++  + LT I +  F +   L+ + +  N
Sbjct: 57  SSLTSITIPSS-LTSIGEYAFSNCSSLTSITIPSN 90

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	325
KOG4194|consensus	873		99.97
KOG4194|consensus	873		99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
KOG0444|consensus	1255		99.9
KOG0444|consensus	1255		99.9
KOG0472|consensus	565		99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
KOG0472|consensus	565		99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.84
KOG4237|consensus	498		99.84
KOG0618|consensus	1081		99.83
KOG0618|consensus	1081		99.79
KOG4237|consensus	498		99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.77
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.76
KOG0617|consensus	264		99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.64
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.63
KOG0617|consensus	264		99.62
KOG1259|consensus	490		99.37
KOG3207|consensus	505		99.33
KOG1259|consensus	490		99.29
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.29
KOG3207|consensus	505		99.28
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.27
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.26
KOG1909|consensus	382		99.23
KOG1909|consensus	382		99.2
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.17
KOG0532|consensus	722		99.1
KOG0531|consensus	414		99.04
KOG0532|consensus	722		99.04
KOG0531|consensus	414		98.93
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.89
KOG1859|consensus	1096		98.67
KOG4658|consensus	889		98.65
KOG2982|consensus	418		98.61
KOG1859|consensus	1096		98.58
KOG4658|consensus	889		98.57
PLN03150	623	hypothetical protein; Provisional	98.57
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.56
KOG2982|consensus	418		98.55
KOG2120|consensus	419		98.5
PLN03150	623	hypothetical protein; Provisional	98.46
KOG1644|consensus	233		98.44
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.44
KOG4579|consensus	177		98.41
KOG3665|consensus	699		98.4
KOG2120|consensus	419		98.34
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.32
KOG4341|consensus	483		98.24
PRK15386	426	type III secretion protein GogB; Provisional	98.2
KOG1644|consensus	233		98.2
KOG4579|consensus	177		98.18
PRK15386	426	type III secretion protein GogB; Provisional	97.99
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.97
KOG4341|consensus	483		97.97
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.94
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.84
KOG3665|consensus	699		97.73
KOG2123|consensus	388		97.58
KOG2123|consensus	388		97.57
KOG2739|consensus	260		97.4
KOG2739|consensus	260		97.31
KOG1947|consensus	482		96.44
KOG1947|consensus	482		96.19
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.48
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.16
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.89
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.87
smart00370	26	LRR Leucine-rich repeats, outliers.	93.87
KOG3864|consensus	221		93.27
KOG4308|consensus	478		93.02
KOG4308|consensus	478		92.98
KOG3864|consensus	221		91.44
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.13
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	85.56

>KOG4194|consensus

Probab=99.97  E-value=2e-31  Score=233.29  Aligned_cols=295  Identities=23%  Similarity=0.359  Sum_probs=245.9

Q ss_pred             hccc-ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCcccccc---cCCc
Q psy11652         24 ISCI-LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTLDSL---PKTM   97 (325)
Q Consensus        24 ~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l---~~~L   97 (325)
                      ..|+ .-+.||+++..+..+.-..+.+-+++..+.|++++|++..+.  .|.++++|+.+++..|.++.++.|   ..+|
T Consensus        48 a~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl  127 (873)
T KOG4194|consen   48 ATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHL  127 (873)
T ss_pred             CcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccce
Confidence            3455 556788999988877654553445567888999999999877  788999999999999999888666   5669


Q ss_pred             cEEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCC
Q psy11652         98 ETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYN  171 (325)
Q Consensus        98 ~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~  171 (325)
                      ++|++.+|.++.+  ..+..++.|+.|+|+.|.++.++   +..-.++++|++++|.|+.+ ...|.++.+|..|.++.|
T Consensus       128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN  207 (873)
T KOG4194|consen  128 EKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN  207 (873)
T ss_pred             eEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC
Confidence            9999999998888  78889999999999999999877   44456899999999999988 778888889999999999


Q ss_pred             cCcccccCccC-CccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCccccccc
Q psy11652        172 QISKLNANTFR-NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQN  249 (325)
Q Consensus       172 ~l~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~  249 (325)
                      +++.+|...|+ +++|+.|++..|.+.-+.-..|.+++ +++.+.+..|++..+.. .|..+.++++|++..|++..+..
T Consensus       208 rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~-Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~  286 (873)
T KOG4194|consen  208 RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLP-SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE  286 (873)
T ss_pred             cccccCHHHhhhcchhhhhhccccceeeehhhhhcCch-hhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc
Confidence            99999988888 59999999999988877667888888 89999999988887765 77888889999999888888877


Q ss_pred             chhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcccccccccchhhhcccccccccceeecc
Q psy11652        250 NTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVMED  319 (325)
Q Consensus       250 ~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (325)
                      ..+-++++|+.|++++|.|..+..  ++.+++|++|++++|.|+.++++.+....++..+++.-|.+.++.+
T Consensus       287 g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e  358 (873)
T KOG4194|consen  287 GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE  358 (873)
T ss_pred             ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh
Confidence            777788888888888888886654  8888888888888888888888888777777788888887766543

>KOG4194|consensus

Probab=99.97  E-value=1.2e-31  Score=234.60  Aligned_cols=286  Identities=24%  Similarity=0.307  Sum_probs=126.3

Q ss_pred             cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCcc
Q psy11652         25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTME   98 (325)
Q Consensus        25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~   98 (325)
                      ++++|+++++..|.++.+|.  | +...-+|+.|+|.+|.|.++.  .+.-++.|+++|++.|.+..+  ..|  -.+++
T Consensus       100 nl~nLq~v~l~~N~Lt~IP~--f-~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~  176 (873)
T KOG4194|consen  100 NLPNLQEVNLNKNELTRIPR--F-GHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIK  176 (873)
T ss_pred             cCCcceeeeeccchhhhccc--c-cccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence            55555555555555555555  2 222234555555555444443  333344444444444444443  333  23344


Q ss_pred             EEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCC------------------------c
Q psy11652         99 TLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNN------------------------L  149 (325)
Q Consensus        99 ~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~------------------------~  149 (325)
                      +|++++|.++.+  ..|..+.+|.+|.|+.|.++.+|   +..+++|+.|++..|                        +
T Consensus       177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~  256 (873)
T KOG4194|consen  177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND  256 (873)
T ss_pred             EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC
Confidence            444444444433  33333334444444444443333   222333333333333                        3


Q ss_pred             cccc-hhhccCCCCccEEEccCCcCccccc-CccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-
Q psy11652        150 ISTI-NLNLNNTYYIKDLILSYNQISKLNA-NTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-  226 (325)
Q Consensus       150 ~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-  226 (325)
                      +..+ ...|..+.++++|++..|++..+.. ++++++.|+.|+++.|.|..+.+..+...+ +|++|+++.|.++.+++ 
T Consensus       257 I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq-kL~~LdLs~N~i~~l~~~  335 (873)
T KOG4194|consen  257 ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ-KLKELDLSSNRITRLDEG  335 (873)
T ss_pred             cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc-cceeEeccccccccCChh
Confidence            3222 2233444444444444444443222 223335555555555555554444444444 55555555555554443 


Q ss_pred             hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCc-ccCC----CCCCCCCCEEECCCCcCcccccccccch
Q psy11652        227 CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT-RIPD----FIHNKRLSHLNLGYNFLNELILESSIVE  301 (325)
Q Consensus       227 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~l~~----~~~~~~L~~L~l~~n~i~~~~~~~~~~~  301 (325)
                      .|..+..|++|++++|.+..+....|.++++|+.|||+.|.++ .+.+    |..+++|+.|++.||+++.|+...+...
T Consensus       336 sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl  415 (873)
T KOG4194|consen  336 SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGL  415 (873)
T ss_pred             HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccC
Confidence            4444444455555555444444444444444555555544444 2211    4444445555555555555444444333


Q ss_pred             hhhcccccccccc
Q psy11652        302 NEIIDQNMLFNSN  314 (325)
Q Consensus       302 ~~~~~~~~~~~~~  314 (325)
                      ..+-.+|+..|-|
T Consensus       416 ~~LE~LdL~~Nai  428 (873)
T KOG4194|consen  416 EALEHLDLGDNAI  428 (873)
T ss_pred             cccceecCCCCcc
Confidence            3344444444444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=9.3e-28  Score=238.73  Aligned_cols=295  Identities=22%  Similarity=0.237  Sum_probs=206.5

Q ss_pred             ccchhhhhccc---ccceEEcCCCceeeecCCCcCcccccCccEEECCCCccc-ccc--cccCCCCccEEEccCCCCccc
Q psy11652         17 PCSENVQISCI---LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIH-QIE--NLNGFRSILWLNMDSNLLQTL   90 (325)
Q Consensus        17 ~~~~~~~~~~~---~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~--~~~~~~~L~~L~l~~~~~~~~   90 (325)
                      .|+.|.++.|.   .++.|+++++.++......| ..+ ++|+.|++++|.+. .+|  .+.++++|++|++++|.+...
T Consensus        56 ~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~-~~l-~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~  133 (968)
T PLN00113         56 DVCLWQGITCNNSSRVVSIDLSGKNISGKISSAI-FRL-PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS  133 (968)
T ss_pred             CCCcCcceecCCCCcEEEEEecCCCccccCChHH-hCC-CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccc
Confidence            46678888885   68999999998885555467 666 89999999999887 566  455889999999999887654


Q ss_pred             -c-cccCCccEEEeecCcccch--hhhccCCCCCEEEccCCcce-eec--CCCCCCccEEEccCCccccc-hhhccCCCC
Q psy11652         91 -D-SLPKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIK-EFV--IPNRKHIEKLDLSNNLISTI-NLNLNNTYY  162 (325)
Q Consensus        91 -~-~l~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~-~~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~  162 (325)
                       + ..+++|++|++++|.+...  ..+..+++|++|++++|.+. .+|  +..+++|++|++++|.+... |..++++++
T Consensus       134 ~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  213 (968)
T PLN00113        134 IPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKS  213 (968)
T ss_pred             cCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCC
Confidence             2 2378888888888877654  56778888888888888775 455  55777888888888877655 777777788


Q ss_pred             ccEEEccCCcCc-ccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCc-CchHhhhCCCCCCEEeCC
Q psy11652        163 IKDLILSYNQIS-KLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT-NINQCFRNLKKLKYLYLH  240 (325)
Q Consensus       163 L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~  240 (325)
                      |+.|++.+|.+. .++..+...++|+.|++++|.+.+..+..+..++ +|+.|++++|.+. .+|..+..+++|++|+++
T Consensus       214 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  292 (968)
T PLN00113        214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK-NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS  292 (968)
T ss_pred             ccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC-CCCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence            888888777766 3444455557777777777777666666677776 7777777777665 455566667777777777


Q ss_pred             CCcccccccchhccCccCCEEEccCCCCc-ccCC-CCCCCCCCEEECCCCcCcccccccccchhhhcccccccccc
Q psy11652        241 NNNIEFIQNNTFEHLVNLKSISLSGNKLT-RIPD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSN  314 (325)
Q Consensus       241 ~~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~  314 (325)
                      +|.+.+..+..+..+++|+.|++++|.+. .+|. +..+++|+.|++++|.+++..+........+..+++..|.+
T Consensus       293 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l  368 (968)
T PLN00113        293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL  368 (968)
T ss_pred             CCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence            77666555555666666777777666665 3344 66666666666666666644443333333444445545444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=6.1e-27  Score=232.90  Aligned_cols=269  Identities=22%  Similarity=0.267  Sum_probs=164.1

Q ss_pred             hcccccceEEcCCCcee-eecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCccc--ccc--cCCcc
Q psy11652         24 ISCILLMSAENEDNQIA-ELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTL--DSL--PKTME   98 (325)
Q Consensus        24 ~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~   98 (325)
                      ..+++|++|++++|.+. .+|...+ ..+ ++|++|++++|.+.+......+++|++|++++|.+...  ..+  +++|+
T Consensus        90 ~~l~~L~~L~Ls~n~~~~~ip~~~~-~~l-~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~  167 (968)
T PLN00113         90 FRLPYIQTINLSNNQLSGPIPDDIF-TTS-SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLK  167 (968)
T ss_pred             hCCCCCCEEECCCCccCCcCChHHh-ccC-CCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence            36778888888888776 5666333 344 77777777777665422234466677777777766543  334  66777


Q ss_pred             EEEeecCcccch--hhhccCCCCCEEEccCCcce-eec--CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCc
Q psy11652         99 TLSVANNYLVNY--LELNRMTSLKWIVLSNNYIK-EFV--IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQ  172 (325)
Q Consensus        99 ~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~-~~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~  172 (325)
                      .|++++|.+...  ..+.++++|++|++++|.+. .+|  +..+.+|+.|++++|.+... |..++++++|+.|++.+|.
T Consensus       168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  247 (968)
T PLN00113        168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN  247 (968)
T ss_pred             EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence            777776665543  45666667777777666665 334  45566666666666666544 5666666666666666666


Q ss_pred             Ccc-cccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCc-CchHhhhCCCCCCEEeCCCCcccccccc
Q psy11652        173 ISK-LNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNIEFIQNN  250 (325)
Q Consensus       173 l~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~  250 (325)
                      +.. ++..+...++|+.|++++|.+.+..+..+..++ +|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..+.
T Consensus       248 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~  326 (968)
T PLN00113        248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ-KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV  326 (968)
T ss_pred             eccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc-CcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence            552 333444446666666666666555555555555 6666666666554 4555556666666666666666555555


Q ss_pred             hhccCccCCEEEccCCCCc-ccCC-CCCCCCCCEEECCCCcCccccc
Q psy11652        251 TFEHLVNLKSISLSGNKLT-RIPD-FIHNKRLSHLNLGYNFLNELIL  295 (325)
Q Consensus       251 ~l~~~~~L~~L~l~~n~l~-~l~~-~~~~~~L~~L~l~~n~i~~~~~  295 (325)
                      .+..+++|+.|++++|.+. .+|. +..+++|+.|++++|.+++..+
T Consensus       327 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p  373 (968)
T PLN00113        327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP  373 (968)
T ss_pred             hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence            5555666666666666665 3444 5555666666666665554333

>KOG0444|consensus

Probab=99.90  E-value=5.4e-26  Score=201.25  Aligned_cols=270  Identities=25%  Similarity=0.275  Sum_probs=206.2

Q ss_pred             cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc-ccc--cCCccE
Q psy11652         25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL-DSL--PKTMET   99 (325)
Q Consensus        25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~-~~l--~~~L~~   99 (325)
                      .+..|+.||++.|+++..|. .+ ... +++-.|+|++|.|.++|  .|-++.-|-.||++.|++..+ +.+  +..|++
T Consensus       101 ~l~dLt~lDLShNqL~EvP~-~L-E~A-Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lqt  177 (1255)
T KOG0444|consen  101 RLKDLTILDLSHNQLREVPT-NL-EYA-KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQT  177 (1255)
T ss_pred             ccccceeeecchhhhhhcch-hh-hhh-cCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhh
Confidence            56677788888888888777 55 444 77888888888888887  566777788888888877777 444  777888


Q ss_pred             EEeecCcccch--hhhccCCCCCEEEccCCcce--eec--CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcC
Q psy11652        100 LSVANNYLVNY--LELNRMTSLKWIVLSNNYIK--EFV--IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQI  173 (325)
Q Consensus       100 L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~--~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l  173 (325)
                      |.+++|++...  ..+..+++|++|.+++.+-+  .+|  ...+.+|+.++++.|.+..+|.++.++++|+.|++++|++
T Consensus       178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i  257 (1255)
T KOG0444|consen  178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI  257 (1255)
T ss_pred             hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce
Confidence            88888877666  56666777777888777554  666  5577888888888888888888888888888888888888


Q ss_pred             cccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCc--CchHhhhCCCCCCEEeCCCCcccccccch
Q psy11652        174 SKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT--NINQCFRNLKKLKYLYLHNNNIEFIQNNT  251 (325)
Q Consensus       174 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  251 (325)
                      +.+........++++|+++.|.++.++ .++..++ .|+.|.+.+|+++  .+|..++++.+|..+...+|.+.-+| ..
T Consensus       258 teL~~~~~~W~~lEtLNlSrNQLt~LP-~avcKL~-kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVP-Eg  334 (1255)
T KOG0444|consen  258 TELNMTEGEWENLETLNLSRNQLTVLP-DAVCKLT-KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVP-EG  334 (1255)
T ss_pred             eeeeccHHHHhhhhhhccccchhccch-HHHhhhH-HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCc-hh
Confidence            877665555578888888888887764 5777787 8888888888776  78888888888888888887765444 46


Q ss_pred             hccCccCCEEEccCCCCcccCC-CCCCCCCCEEECCCCcCcccccccccc
Q psy11652        252 FEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELILESSIV  300 (325)
Q Consensus       252 l~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~  300 (325)
                      ++.|.+|+.|.|+.|.+..+|+ +--++.|+.|+++.|+=--.||...-.
T Consensus       335 lcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da  384 (1255)
T KOG0444|consen  335 LCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDA  384 (1255)
T ss_pred             hhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCCcchh
Confidence            7888888888888888888887 666788888888888755556555433

>KOG0444|consensus

Probab=99.90  E-value=4.7e-26  Score=201.65  Aligned_cols=144  Identities=19%  Similarity=0.222  Sum_probs=65.5

Q ss_pred             cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc---c-cc-cCCcc
Q psy11652         25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL---D-SL-PKTME   98 (325)
Q Consensus        25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~---~-~l-~~~L~   98 (325)
                      .++.++-|.+..+.+..+|. .+ +.+ ++|++|.+.+|.+.++- .++.++.|+.+.+..|++...   . -| +..|+
T Consensus        30 qMt~~~WLkLnrt~L~~vPe-EL-~~l-qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt  106 (1255)
T KOG0444|consen   30 QMTQMTWLKLNRTKLEQVPE-EL-SRL-QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLT  106 (1255)
T ss_pred             HhhheeEEEechhhhhhChH-HH-HHH-hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccce
Confidence            34455555555555555555 44 444 45555555555444443 444455555555554444332   1 22 44455


Q ss_pred             EEEeecCcccch-hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccchhhccCCCCccEEEccCC
Q psy11652         99 TLSVANNYLVNY-LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYN  171 (325)
Q Consensus        99 ~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  171 (325)
                      .|++++|.+... ..+..-+++-.|++++|++..+|   +.++.-|-+|++++|.+..+|.-+..+..|++|.+++|
T Consensus       107 ~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N  183 (1255)
T KOG0444|consen  107 ILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN  183 (1255)
T ss_pred             eeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC
Confidence            555555544444 34444444444444444444444   33333444444444444444333333333334444333

>KOG0472|consensus

Probab=99.88  E-value=1.1e-24  Score=183.47  Aligned_cols=266  Identities=25%  Similarity=0.322  Sum_probs=173.9

Q ss_pred             cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc-cc-c-cCCccEE
Q psy11652         25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL-DS-L-PKTMETL  100 (325)
Q Consensus        25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~-l-~~~L~~L  100 (325)
                      +...+..++++.+.+..++. .+ +++ -.|+.++-.+|.+.+.| ++.++.++..+++.+|.+... +. + ++.|+++
T Consensus       112 s~~~l~~l~~s~n~~~el~~-~i-~~~-~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~l  188 (565)
T KOG0472|consen  112 SLISLVKLDCSSNELKELPD-SI-GRL-LDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHL  188 (565)
T ss_pred             hhhhhhhhhccccceeecCc-hH-HHH-hhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhc
Confidence            44556666666666666666 44 444 45666666666666666 566666666666666666555 22 2 5666666


Q ss_pred             EeecCcccch-hhhccCCCCCEEEccCCcceeec-C------------------------CCCCCccEEEccCCccccch
Q psy11652        101 SVANNYLVNY-LELNRMTSLKWIVLSNNYIKEFV-I------------------------PNRKHIEKLDLSNNLISTIN  154 (325)
Q Consensus       101 ~l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~-~------------------------~~~~~L~~L~l~~~~~~~~~  154 (325)
                      +...|.++.+ +.++.+.+|.-|++..|++..+| +                        ..++++..||+.+|+++++|
T Consensus       189 d~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~P  268 (565)
T KOG0472|consen  189 DCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVP  268 (565)
T ss_pred             ccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCc
Confidence            6666655555 55555555555555555555444 2                        25667777777777877777


Q ss_pred             hhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCccc-----------------------------------
Q psy11652        155 LNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEI-----------------------------------  199 (325)
Q Consensus       155 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~-----------------------------------  199 (325)
                      ..+.-+.+|+.|++++|.++.++....+. +|+.|.+.||.+..+                                   
T Consensus       269 de~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~  347 (565)
T KOG0472|consen  269 DEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA  347 (565)
T ss_pred             hHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence            77777777788888888777777776666 677776666654321                                   


Q ss_pred             -------------------------------------------------------------------------------C
Q psy11652        200 -------------------------------------------------------------------------------H  200 (325)
Q Consensus       200 -------------------------------------------------------------------------------~  200 (325)
                                                                                                     .
T Consensus       348 ~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv  427 (565)
T KOG0472|consen  348 MTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFV  427 (565)
T ss_pred             CCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccc
Confidence                                                                                           1


Q ss_pred             hhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccc-----------------------cccchhccCcc
Q psy11652        201 DFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEF-----------------------IQNNTFEHLVN  257 (325)
Q Consensus       201 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~-----------------------~~~~~l~~~~~  257 (325)
                      +..++.++ ++..|++++|-+.++|..++.+..|+.++++.|+|..                       +++..+.++.+
T Consensus       428 ~~~l~~l~-kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n  506 (565)
T KOG0472|consen  428 PLELSQLQ-KLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN  506 (565)
T ss_pred             hHHHHhhh-cceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence            12223333 7777788888777888777777778888888776542                       33434666777


Q ss_pred             CCEEEccCCCCcccCC-CCCCCCCCEEECCCCcCcccccc
Q psy11652        258 LKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELILE  296 (325)
Q Consensus       258 L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~~  296 (325)
                      |..||+.+|.+..+|+ ++++.+|++|.++||+|+ .|+.
T Consensus       507 L~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr-~Pr~  545 (565)
T KOG0472|consen  507 LTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR-QPRH  545 (565)
T ss_pred             cceeccCCCchhhCChhhccccceeEEEecCCccC-CCHH
Confidence            7888888888888887 788888888888888887 5544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.2e-21  Score=184.25  Aligned_cols=246  Identities=23%  Similarity=0.243  Sum_probs=148.6

Q ss_pred             cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccccCCccEEEeecCc
Q psy11652         27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNY  106 (325)
Q Consensus        27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~L~~L~l~~~~  106 (325)
                      .+-..|+++++.++.+|. .+    .++|+.|.+.+|.++.+|.+  .++|++|++++|.++.++.++++|+.|++.+|.
T Consensus       201 ~~~~~LdLs~~~LtsLP~-~l----~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~  273 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPD-CL----PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNP  273 (788)
T ss_pred             CCCcEEEcCCCCCCcCCc-ch----hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCcccccceeeccCCc
Confidence            466788999988888887 44    25788888888888887732  578888888888888775567788888888887


Q ss_pred             ccchhhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccc
Q psy11652        107 LVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNV  186 (325)
Q Consensus       107 l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L  186 (325)
                      +..+..  ...+|+.|++++|.++.+|. .+++|+.|++++|.++.+|...   .+|+.|++.+|.++.++..   ..+|
T Consensus       274 L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~-~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~~L  344 (788)
T PRK15387        274 LTHLPA--LPSGLCKLWIFGNQLTSLPV-LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLPTL---PSGL  344 (788)
T ss_pred             hhhhhh--chhhcCEEECcCCccccccc-cccccceeECCCCccccCCCCc---ccccccccccCcccccccc---cccc
Confidence            766532  12456677777777776662 2456777777777766653321   2344455555555444321   1345


Q ss_pred             cEEEcccCCCcccChhh---------------hhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccch
Q psy11652        187 FRLYLKFNKISEIHDFA---------------FNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNT  251 (325)
Q Consensus       187 ~~L~l~~~~l~~~~~~~---------------~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  251 (325)
                      +.|++++|.++.++...               +...+++|+.|++++|.+..+|..   .++|+.|++++|.++.++.. 
T Consensus       345 q~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l-  420 (788)
T PRK15387        345 QELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML-  420 (788)
T ss_pred             ceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc-
Confidence            55555555554432100               001112455555555555554432   24556666666665554431 


Q ss_pred             hccCccCCEEEccCCCCcccCC-CCCCCCCCEEECCCCcCccccc
Q psy11652        252 FEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELIL  295 (325)
Q Consensus       252 l~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~  295 (325)
                         ..+|+.|++++|.++.+|. +..+++|+.|++++|++++..+
T Consensus       421 ---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        421 ---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTL  462 (788)
T ss_pred             ---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHH
Confidence               1345566666666666665 6666666666666666665443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.5e-21  Score=183.65  Aligned_cols=217  Identities=22%  Similarity=0.254  Sum_probs=146.8

Q ss_pred             ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccccCCccEEEeecCcc
Q psy11652         28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYL  107 (325)
Q Consensus        28 ~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~L~~L~l~~~~l  107 (325)
                      +|+.|++.+|.++.+|.      .+++|++|++++|.++.+|.+  .++|+.|++++|.+..++.++.+|+.|++++|.+
T Consensus       223 ~L~~L~L~~N~Lt~LP~------lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~L  294 (788)
T PRK15387        223 HITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQL  294 (788)
T ss_pred             CCCEEEccCCcCCCCCC------CCCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhchhhcCEEECcCCcc
Confidence            67888888888887776      136788888888877777622  2456666666665554433344555555555544


Q ss_pred             cchhhhccCCCCCEEEccCCcce--------------------eecCCCCCCccEEEccCCccccchhhccCCCCccEEE
Q psy11652        108 VNYLELNRMTSLKWIVLSNNYIK--------------------EFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLI  167 (325)
Q Consensus       108 ~~~~~~~~~~~L~~L~l~~~~~~--------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  167 (325)
                      ..++.  ..++|+.|++++|.++                    .+|. ...+|+.|++++|.++.+|..   ..+|+.|+
T Consensus       295 t~LP~--~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~-lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~  368 (788)
T PRK15387        295 TSLPV--LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPT-LPSGLQELSVSDNQLASLPTL---PSELYKLW  368 (788)
T ss_pred             ccccc--cccccceeECCCCccccCCCCcccccccccccCccccccc-cccccceEecCCCccCCCCCC---Ccccceeh
Confidence            44321  1234555555555444                    4441 124677777777777766432   24566677


Q ss_pred             ccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCccccc
Q psy11652        168 LSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFI  247 (325)
Q Consensus       168 l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~  247 (325)
                      +.+|.+..++..   ..+|+.|++++|.++.++..    . ++|+.|++++|.+..+|..   ..+|+.|++++|.++.+
T Consensus       369 Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l----~-s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~L  437 (788)
T PRK15387        369 AYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL----P-SELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRL  437 (788)
T ss_pred             hhccccccCccc---ccccceEEecCCcccCCCCc----c-cCCCEEEccCCcCCCCCcc---hhhhhhhhhccCccccc
Confidence            777777665542   25789999999998876531    2 3899999999999988753   34688899999999987


Q ss_pred             ccchhccCccCCEEEccCCCCcc
Q psy11652        248 QNNTFEHLVNLKSISLSGNKLTR  270 (325)
Q Consensus       248 ~~~~l~~~~~L~~L~l~~n~l~~  270 (325)
                      |. .+..+++|+.|++++|.++.
T Consensus       438 P~-sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        438 PE-SLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             Ch-HHhhccCCCeEECCCCCCCc
Confidence            65 67889999999999999983

>KOG0472|consensus

Probab=99.85  E-value=1.7e-24  Score=182.42  Aligned_cols=263  Identities=23%  Similarity=0.267  Sum_probs=231.1

Q ss_pred             ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc-ccc--cCCccEEEee
Q psy11652         28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL-DSL--PKTMETLSVA  103 (325)
Q Consensus        28 ~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~l--~~~L~~L~l~  103 (325)
                      .++.+.++.|.++.+.. .+ .++ +.|..|.+.++.+...| +++.+..++.++.+.|++..+ +.+  ...+.+++.+
T Consensus        46 ~l~~lils~N~l~~l~~-dl-~nL-~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLRE-DL-KNL-ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS  122 (565)
T ss_pred             chhhhhhccCchhhccH-hh-hcc-cceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc
Confidence            47788899999887766 45 555 88999999999999988 888899999999999998888 555  8899999999


Q ss_pred             cCcccch-hhhccCCCCCEEEccCCcceeec--CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCc
Q psy11652        104 NNYLVNY-LELNRMTSLKWIVLSNNYIKEFV--IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANT  180 (325)
Q Consensus       104 ~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  180 (325)
                      +|.+... +.++.+-.++.++..+|+++.+|  ..++.++..+++.+|.++..|...-.+..|++++...|.++.+|+.+
T Consensus       123 ~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~l  202 (565)
T KOG0472|consen  123 SNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPEL  202 (565)
T ss_pred             ccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhh
Confidence            9998888 88999999999999999999888  77889999999999999998444444999999999999999999999


Q ss_pred             cCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhh-hCCCCCCEEeCCCCcccccccchhccCccCC
Q psy11652        181 FRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCF-RNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK  259 (325)
Q Consensus       181 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~  259 (325)
                      ..+.+|..|++..|++..++  .|.++. .|+++.++.|.+.-+|... ..++++..|+++.|++.+.|. .+.-+.+|+
T Consensus       203 g~l~~L~~LyL~~Nki~~lP--ef~gcs-~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd-e~clLrsL~  278 (565)
T KOG0472|consen  203 GGLESLELLYLRRNKIRFLP--EFPGCS-LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD-EICLLRSLE  278 (565)
T ss_pred             cchhhhHHHHhhhcccccCC--CCCccH-HHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCch-HHHHhhhhh
Confidence            98899999999999998886  688887 9999999999999888754 488999999999999999877 566688999


Q ss_pred             EEEccCCCCcccCC-CCCCCCCCEEECCCCcCcccccccc
Q psy11652        260 SISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELILESS  298 (325)
Q Consensus       260 ~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~  298 (325)
                      +||+++|.++++|. ++++ .|+.|-+-||+++++..+..
T Consensus       279 rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii  317 (565)
T KOG0472|consen  279 RLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREII  317 (565)
T ss_pred             hhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHH
Confidence            99999999999998 8888 89999999999999887753

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.84  E-value=1.7e-20  Score=177.28  Aligned_cols=244  Identities=20%  Similarity=0.260  Sum_probs=200.3

Q ss_pred             cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc-ccccCCccEEEeec
Q psy11652         27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL-DSLPKTMETLSVAN  104 (325)
Q Consensus        27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~l~~~L~~L~l~~  104 (325)
                      .+...|++++..++.+|. .+    +++|+.|++++|.++.+| .+.  .+|++|++++|.+..+ ..++++|+.|++++
T Consensus       178 ~~~~~L~L~~~~LtsLP~-~I----p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~  250 (754)
T PRK15370        178 NNKTELRLKILGLTTIPA-CI----PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELSI  250 (754)
T ss_pred             cCceEEEeCCCCcCcCCc-cc----ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhhccccEEECcC
Confidence            467899999999999987 34    478999999999999998 443  5899999999999888 55678999999999


Q ss_pred             Ccccch-hhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCC
Q psy11652        105 NYLVNY-LELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRN  183 (325)
Q Consensus       105 ~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~  183 (325)
                      |.+..+ ..+  ..+|+.|++++|.+..+|.....+|+.|++++|.++.+|..+.  ++|+.|++.+|.++.++...  .
T Consensus       251 N~L~~LP~~l--~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~  324 (754)
T PRK15370        251 NRITELPERL--PSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETL--P  324 (754)
T ss_pred             CccCcCChhH--hCCCCEEECcCCccCccccccCCCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCccc--c
Confidence            998877 333  2589999999999998883334689999999999998865442  47899999999998876543  2


Q ss_pred             ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEc
Q psy11652        184 LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISL  263 (325)
Q Consensus       184 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l  263 (325)
                      ++|+.|++++|.++.++. .+   +++|+.|++++|.+..+|..+.  ++|+.|++++|.++.+++. +.  ..|+.|++
T Consensus       325 ~sL~~L~Ls~N~Lt~LP~-~l---~~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~-l~--~sL~~LdL  395 (754)
T PRK15370        325 PGLKTLEAGENALTSLPA-SL---PPELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPEN-LP--AALQIMQA  395 (754)
T ss_pred             ccceeccccCCccccCCh-hh---cCcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHh-HH--HHHHHHhh
Confidence            789999999999988753 22   3499999999999998887553  6899999999999988764 33  36899999


Q ss_pred             cCCCCcccCC-----CCCCCCCCEEECCCCcCcc
Q psy11652        264 SGNKLTRIPD-----FIHNKRLSHLNLGYNFLNE  292 (325)
Q Consensus       264 ~~n~l~~l~~-----~~~~~~L~~L~l~~n~i~~  292 (325)
                      ++|++..+|.     ....+++..+++.+|+++.
T Consensus       396 s~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        396 SRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             ccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            9999998876     3445888999999999873

>KOG4237|consensus

Probab=99.84  E-value=8.6e-23  Score=171.73  Aligned_cols=290  Identities=21%  Similarity=0.273  Sum_probs=178.1

Q ss_pred             ccccchhhhhccccc--ceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc
Q psy11652         15 YGPCSENVQISCILL--MSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL   90 (325)
Q Consensus        15 ~~~~~~~~~~~~~~L--~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~   90 (325)
                      ..+||  +++.|+..  -..++++..++.+|. .+    ++.-..++|..|.|+.+|  +|+.+++|+.||++.|.|..+
T Consensus        34 ~~~CP--~pC~Cs~~~g~~VdCr~~GL~eVP~-~L----P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I  106 (498)
T KOG4237|consen   34 ASACP--APCTCSDVEGGIVDCRGKGLTEVPA-NL----PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI  106 (498)
T ss_pred             cccCC--CCcccCCCCCceEEccCCCcccCcc-cC----CCcceEEEeccCCcccCChhhccchhhhceecccccchhhc
Confidence            34555  44566653  355778888888888 45    577888899999999998  899999999999999998888


Q ss_pred             --ccc--cCCccEEEee-cCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-hhhccC
Q psy11652         91 --DSL--PKTMETLSVA-NNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNN  159 (325)
Q Consensus        91 --~~l--~~~L~~L~l~-~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~  159 (325)
                        ++|  ++.+.+|-+. +|.++.+  ..|.++..++.|.+.-|++.-+.   +..++++..|.+.+|.+..+ ...|..
T Consensus       107 ~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~  186 (498)
T KOG4237|consen  107 APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQG  186 (498)
T ss_pred             ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccc
Confidence              667  5666555554 4788888  78888888888888888877555   56788888888888888877 457888


Q ss_pred             CCCccEEEccCCcCc---ccc---------cCccCC-ccccEEEcccCCCcccChhhhhCccccCCEE--Ec-cCC-CCc
Q psy11652        160 TYYIKDLILSYNQIS---KLN---------ANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFL--DL-ENN-RLT  222 (325)
Q Consensus       160 ~~~L~~L~l~~~~l~---~~~---------~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L--~l-~~~-~l~  222 (325)
                      +..++.+++..|..-   .++         +..++. ..+....+...++..+....|...   ++.+  .+ +.+ -..
T Consensus       187 l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~---~esl~s~~~~~d~~d~  263 (498)
T KOG4237|consen  187 LAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS---LESLPSRLSSEDFPDS  263 (498)
T ss_pred             hhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh---HHhHHHhhccccCcCC
Confidence            888888887766511   111         111111 222222233333333322222211   1111  01 111 112


Q ss_pred             CchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCccccccccc
Q psy11652        223 NINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSI  299 (325)
Q Consensus       223 ~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~~~  299 (325)
                      ..|. .|.++++|+.+++++|+++++.+..|.+...++.|.|..|++..+..  |.++.+|+.|++.+|+|+.+.+..+.
T Consensus       264 ~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~  343 (498)
T KOG4237|consen  264 ICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ  343 (498)
T ss_pred             cChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence            3332 45556666666666666666555556666666666666666654443  55555666666666666666665555


Q ss_pred             chhhhcccccccccc
Q psy11652        300 VENEIIDQNMLFNSN  314 (325)
Q Consensus       300 ~~~~~~~~~~~~~~~  314 (325)
                      ....+..+++..|.+
T Consensus       344 ~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  344 TLFSLSTLNLLSNPF  358 (498)
T ss_pred             ccceeeeeehccCcc
Confidence            555555555555544

>KOG0618|consensus

Probab=99.83  E-value=4.5e-22  Score=183.24  Aligned_cols=238  Identities=23%  Similarity=0.278  Sum_probs=175.3

Q ss_pred             CCccEEEccCCCCccc-ccc-cCCccEEEeecCcccch-hhhccCCCCCEEEccCCcceeec--CCCCCCccEEEccCCc
Q psy11652         75 RSILWLNMDSNLLQTL-DSL-PKTMETLSVANNYLVNY-LELNRMTSLKWIVLSNNYIKEFV--IPNRKHIEKLDLSNNL  149 (325)
Q Consensus        75 ~~L~~L~l~~~~~~~~-~~l-~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~L~~L~l~~~~  149 (325)
                      ++++.|+.+.|.+... ..+ +.+|+.++++++.++.+ ..+..+++|+.+....|.++.+|  +....+|++|.+..|.
T Consensus       219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne  298 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE  298 (1081)
T ss_pred             cchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh
Confidence            4555666666665544 334 88888888888888888 77788888888888888888777  5566677777777777


Q ss_pred             cccchhhccCCCCccEEEccCCcCcccccCccCC--------------------------ccccEEEcccCCCcccChhh
Q psy11652        150 ISTINLNLNNTYYIKDLILSYNQISKLNANTFRN--------------------------LNVFRLYLKFNKISEIHDFA  203 (325)
Q Consensus       150 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~--------------------------~~L~~L~l~~~~l~~~~~~~  203 (325)
                      +..+|.......+|++|++..|.+..++...+..                          +.|+.|++.+|.+++..-..
T Consensus       299 l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~  378 (1081)
T KOG0618|consen  299 LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV  378 (1081)
T ss_pred             hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh
Confidence            7777666666777777777777766555433221                          33555666666666655556


Q ss_pred             hhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCCCCCCCCCCE
Q psy11652        204 FNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSH  282 (325)
Q Consensus       204 ~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~  282 (325)
                      +.+++ .|+.|++++|.+..+|. .+.+++.|+.|+++||+++.++. .+..+..|+.|...+|++..+|.+..+++|+.
T Consensus       379 l~~~~-hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~-tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~  456 (1081)
T KOG0618|consen  379 LVNFK-HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPD-TVANLGRLHTLRAHSNQLLSFPELAQLPQLKV  456 (1081)
T ss_pred             hcccc-ceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhH-HHHhhhhhHHHhhcCCceeechhhhhcCcceE
Confidence            66777 88888888888887776 66778888888888888887764 66777888888888888888888888888888


Q ss_pred             EECCCCcCcccccccccchhhhcccccccccc
Q psy11652        283 LNLGYNFLNELILESSIVENEIIDQNMLFNSN  314 (325)
Q Consensus       283 L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~  314 (325)
                      +|++.|+++.+......+..++.++|++.|..
T Consensus       457 lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  457 LDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             EecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            88888888887777666667777888887764

>KOG0618|consensus

Probab=99.79  E-value=5.6e-21  Score=176.08  Aligned_cols=263  Identities=23%  Similarity=0.284  Sum_probs=208.4

Q ss_pred             cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc-ccc--cCCccEEEe
Q psy11652         27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL-DSL--PKTMETLSV  102 (325)
Q Consensus        27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~l--~~~L~~L~l  102 (325)
                      +.++.|+.+.|.++.+..    .-.+.+|++++++.+.+..+| .++.|.+|..+....|.+..+ .++  ..+|+.|.+
T Consensus       219 ~~l~~L~a~~n~l~~~~~----~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~  294 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDV----HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSA  294 (1081)
T ss_pred             cchheeeeccCcceeecc----ccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHh
Confidence            355555556666654444    223468999999999999998 788899999999999988776 444  888999999


Q ss_pred             ecCcccch-hhhccCCCCCEEEccCCcceeec---CCCC-CCccEEEccCCccccch-hhccCCCCccEEEccCCcCccc
Q psy11652        103 ANNYLVNY-LELNRMTSLKWIVLSNNYIKEFV---IPNR-KHIEKLDLSNNLISTIN-LNLNNTYYIKDLILSYNQISKL  176 (325)
Q Consensus       103 ~~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~---~~~~-~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~  176 (325)
                      .+|.+..+ +...+.+.|++|++..|.+..+|   +... ..+..+..+.+.+...| ..=..++.|+.|++.+|.+++-
T Consensus       295 ~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~  374 (1081)
T KOG0618|consen  295 AYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS  374 (1081)
T ss_pred             hhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc
Confidence            99988888 66667999999999999999888   2222 34677777777777663 1123356799999999999854


Q ss_pred             ccCcc-CCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccC
Q psy11652        177 NANTF-RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHL  255 (325)
Q Consensus       177 ~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~  255 (325)
                      -...+ ..++|+.|++++|++..++...+..+. .|++|++++|+++.+|..+..++.|++|...+|++..+|  .+..+
T Consensus       375 c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle-~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP--e~~~l  451 (1081)
T KOG0618|consen  375 CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLE-ELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP--ELAQL  451 (1081)
T ss_pred             chhhhccccceeeeeecccccccCCHHHHhchH-HhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech--hhhhc
Confidence            33344 449999999999999999999999998 999999999999999999999999999999999999887  57788


Q ss_pred             ccCCEEEccCCCCc--ccCCCCCCCCCCEEECCCCcCcccccc
Q psy11652        256 VNLKSISLSGNKLT--RIPDFIHNKRLSHLNLGYNFLNELILE  296 (325)
Q Consensus       256 ~~L~~L~l~~n~l~--~l~~~~~~~~L~~L~l~~n~i~~~~~~  296 (325)
                      +.|+.+|++.|.++  .+|.-..-++|+.|+++||.-...+-+
T Consensus       452 ~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~  494 (1081)
T KOG0618|consen  452 PQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHK  494 (1081)
T ss_pred             CcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchh
Confidence            99999999999998  444422228999999999986444433

>KOG4237|consensus

Probab=99.79  E-value=2.5e-21  Score=163.03  Aligned_cols=261  Identities=25%  Similarity=0.335  Sum_probs=192.9

Q ss_pred             ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccC-CCCccc--ccc--cCCccEE
Q psy11652         28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDS-NLLQTL--DSL--PKTMETL  100 (325)
Q Consensus        28 ~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~-~~~~~~--~~l--~~~L~~L  100 (325)
                      .-..++|..|.|+.+|..+| +.+ ++|+.|+|++|.|+.+.  +|.+++++.+|-+.+ |+|+++  ..|  +.+++.|
T Consensus        68 ~tveirLdqN~I~~iP~~aF-~~l-~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAF-KTL-HRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccCCcccCChhhc-cch-hhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            56789999999999999999 888 99999999999999886  999999988877766 899999  667  8999999


Q ss_pred             EeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-------------hhhccCCCC
Q psy11652        101 SVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-------------NLNLNNTYY  162 (325)
Q Consensus       101 ~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-------------~~~~~~~~~  162 (325)
                      .+.-|.+..+  ..+..++++..|.+.+|.+..++   +..+..++.+.+..|.+...             +..+++..-
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence            9999988888  89999999999999999988777   55677777777766552111             222333333


Q ss_pred             ccEEEccCCcCcccccCccCCc--cccEEEcccC-CCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEe
Q psy11652        163 IKDLILSYNQISKLNANTFRNL--NVFRLYLKFN-KISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLY  238 (325)
Q Consensus       163 L~~L~l~~~~l~~~~~~~~~~~--~L~~L~l~~~-~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~  238 (325)
                      .....+.+.++.++.+.-+...  .+..-..+.+ .....+...|..++ +|+.+++++|+++.+.+ +|.+..+++.|.
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~-~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~  304 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLP-NLRKLNLSNNKITRIEDGAFEGAAELQELY  304 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcc-cceEeccCCCccchhhhhhhcchhhhhhhh
Confidence            3333333333433333322221  2221112222 33344556788887 88888888888886665 788888888888


Q ss_pred             CCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCc
Q psy11652        239 LHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLN  291 (325)
Q Consensus       239 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~  291 (325)
                      +..|++..+...+|.++..|+.|+|++|+|+.+.+  |....+|.+|++-.|++.
T Consensus       305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            88888887777788888888888888888886655  777888888888887764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=4.4e-19  Score=167.81  Aligned_cols=243  Identities=23%  Similarity=0.255  Sum_probs=184.0

Q ss_pred             cCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc-ccccCCccEEEeecCcccch-hhhccCCCCCEEEccCCcc
Q psy11652         53 NKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL-DSLPKTMETLSVANNYLVNY-LELNRMTSLKWIVLSNNYI  129 (325)
Q Consensus        53 ~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~l~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~~~  129 (325)
                      .+...|+++++.++.+| .+.  +.++.|++++|.+..+ ..++++|+.|++++|.++.+ ..+  .++|+.|++++|.+
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L  253 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATL--PDTIQEMELSINRI  253 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhh--hccccEEECcCCcc
Confidence            56788999988888888 343  5789999999988877 44577899999999988777 322  25799999999999


Q ss_pred             eeecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccc
Q psy11652        130 KEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNS  209 (325)
Q Consensus       130 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  209 (325)
                      ..+|.....+|+.|++++|.++.+|..+.  ++|+.|++++|.++.++..+.  ++|+.|++++|.++.++..    .++
T Consensus       254 ~~LP~~l~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~----l~~  325 (754)
T PRK15370        254 TELPERLPSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPET----LPP  325 (754)
T ss_pred             CcCChhHhCCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcc----ccc
Confidence            88883334689999999999887765543  579999999998887765432  5788899999988876532    223


Q ss_pred             cCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC-CCCCCCCCEEECCCC
Q psy11652        210 TLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYN  288 (325)
Q Consensus       210 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n  288 (325)
                      +|+.|++++|.++.+|..+.  ++|+.|++++|.++.++. .+.  ++|+.|++++|.++.+|+ +.  .+|+.|++++|
T Consensus       326 sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~-~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N  398 (754)
T PRK15370        326 GLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPE-TLP--PTITTLDVSRNALTNLPENLP--AALQIMQASRN  398 (754)
T ss_pred             cceeccccCCccccCChhhc--CcccEEECCCCCCCcCCh-hhc--CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccC
Confidence            89999999999888887553  689999999999887654 332  689999999999998887 43  46889999999


Q ss_pred             cCcccccccccch---hhhcccccccccc
Q psy11652        289 FLNELILESSIVE---NEIIDQNMLFNSN  314 (325)
Q Consensus       289 ~i~~~~~~~~~~~---~~~~~~~~~~~~~  314 (325)
                      .++.+|.......   .....+++..|.+
T Consensus       399 ~L~~LP~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        399 NLVRLPESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence            9998876543211   2234456666665

>PLN03210 Resistant to P

Probab=99.77  E-value=1.8e-17  Score=166.48  Aligned_cols=254  Identities=19%  Similarity=0.209  Sum_probs=139.8

Q ss_pred             ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc-cccCCCCccEEEccCCC-Ccccccc--cCCccEEEee
Q psy11652         28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNL-LQTLDSL--PKTMETLSVA  103 (325)
Q Consensus        28 ~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~-~~~~~~l--~~~L~~L~l~  103 (325)
                      +|+.|.+.++.++.+|. .|   .+.+|+.|++.++.+..++ .+..+++|+.++++++. +..++.+  +++|+.|+++
T Consensus       590 ~Lr~L~~~~~~l~~lP~-~f---~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~  665 (1153)
T PLN03210        590 KLRLLRWDKYPLRCMPS-NF---RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLS  665 (1153)
T ss_pred             ccEEEEecCCCCCCCCC-cC---CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEec
Confidence            57777777777777776 44   2367777777777777666 56667777777777653 3333444  6777777777


Q ss_pred             cCc-ccch-hhhccCCCCCEEEccCC-cceeec-CCCCCCccEEEccCCcccc-chhhccCCCCccEEEccCCcCccccc
Q psy11652        104 NNY-LVNY-LELNRMTSLKWIVLSNN-YIKEFV-IPNRKHIEKLDLSNNLIST-INLNLNNTYYIKDLILSYNQISKLNA  178 (325)
Q Consensus       104 ~~~-l~~~-~~~~~~~~L~~L~l~~~-~~~~~~-~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~  178 (325)
                      +|. +..+ ..+..+++|+.|++++| .+..+| ...+.+|+.|++++|.... .|..   ..+|+.|++.++.+..+|.
T Consensus       666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~  742 (1153)
T PLN03210        666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPS  742 (1153)
T ss_pred             CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccc
Confidence            653 3333 55667777777777765 345566 3356667777776664322 2321   2345556666555554443


Q ss_pred             CccCC-------------------------------ccccEEEcccCCCcccChhhhhCccccCCEEEccCC-CCcCchH
Q psy11652        179 NTFRN-------------------------------LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENN-RLTNINQ  226 (325)
Q Consensus       179 ~~~~~-------------------------------~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~  226 (325)
                      .. ..                               ++|+.|++++|......|..+..++ +|+.|++++| .+..+|.
T Consensus       743 ~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~-~L~~L~Ls~C~~L~~LP~  820 (1153)
T PLN03210        743 NL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH-KLEHLEIENCINLETLPT  820 (1153)
T ss_pred             cc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCC-CCCEEECCCCCCcCeeCC
Confidence            21 11                               3455555555533322333455555 5566655554 3444443


Q ss_pred             hhhCCCCCCEEeCCCCccc-ccccchhccCccCCEEEccCCCCcccCC-CCCCCCCCEEECCC-CcCccccc
Q psy11652        227 CFRNLKKLKYLYLHNNNIE-FIQNNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGY-NFLNELIL  295 (325)
Q Consensus       227 ~~~~~~~L~~L~l~~~~l~-~~~~~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~-n~i~~~~~  295 (325)
                      .+ .+++|+.|++++|... .++.    ..++|+.|++++|.+..+|. +..+++|+.|++++ +.++.++.
T Consensus       821 ~~-~L~sL~~L~Ls~c~~L~~~p~----~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~  887 (1153)
T PLN03210        821 GI-NLESLESLDLSGCSRLRTFPD----ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL  887 (1153)
T ss_pred             CC-CccccCEEECCCCCccccccc----cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence            32 3445555555544221 1111    11345556666666665555 55556666666655 34554444

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.76  E-value=5.1e-17  Score=163.20  Aligned_cols=266  Identities=22%  Similarity=0.244  Sum_probs=198.0

Q ss_pred             hhhhcccccceEEcCCCce------e-eecCCCcCcccccCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc-c
Q psy11652         21 NVQISCILLMSAENEDNQI------A-ELETANWSPEIQNKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL-D   91 (325)
Q Consensus        21 ~~~~~~~~L~~L~l~~~~i------~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~   91 (325)
                      .+...|++|+.|.+..+..      . .+|. .| ..+++.|+.|.+.++.+..+| .| ...+|+.|++.++.+..+ .
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~-~~-~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~  628 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPE-GF-DYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWD  628 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCc-ch-hhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccc
Confidence            4466899999999965432      2 4555 56 556578999999999999999 44 678999999999998887 5


Q ss_pred             cc--cCCccEEEeecCc-ccchhhhccCCCCCEEEccCCc-ceeec--CCCCCCccEEEccCCc-cccchhhccCCCCcc
Q psy11652         92 SL--PKTMETLSVANNY-LVNYLELNRMTSLKWIVLSNNY-IKEFV--IPNRKHIEKLDLSNNL-ISTINLNLNNTYYIK  164 (325)
Q Consensus        92 ~l--~~~L~~L~l~~~~-l~~~~~~~~~~~L~~L~l~~~~-~~~~~--~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~  164 (325)
                      ++  +++|+.|+++++. +..++.+..+++|++|++++|. +..+|  +..+.+|+.|++++|. ++.+|..+ ++++|+
T Consensus       629 ~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~  707 (1153)
T PLN03210        629 GVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY  707 (1153)
T ss_pred             ccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence            55  8999999999864 5555778889999999999875 55777  6788999999999875 55556554 789999


Q ss_pred             EEEccCCc-CcccccCccCCccccEEEcccCCCcccChhh----------------------------hhCccccCCEEE
Q psy11652        165 DLILSYNQ-ISKLNANTFRNLNVFRLYLKFNKISEIHDFA----------------------------FNGLNSTLEFLD  215 (325)
Q Consensus       165 ~L~l~~~~-l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~----------------------------~~~~~~~L~~L~  215 (325)
                      .|++.+|. +..++.   ...+|+.|+++++.+..++...                            ....+++|+.|+
T Consensus       708 ~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~  784 (1153)
T PLN03210        708 RLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLF  784 (1153)
T ss_pred             EEeCCCCCCcccccc---ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchhee
Confidence            99999984 334432   1368999999999877654310                            001123777888


Q ss_pred             ccCCC-CcCchHhhhCCCCCCEEeCCCCc-ccccccchhccCccCCEEEccCCC-CcccCCCCCCCCCCEEECCCCcCcc
Q psy11652        216 LENNR-LTNINQCFRNLKKLKYLYLHNNN-IEFIQNNTFEHLVNLKSISLSGNK-LTRIPDFIHNKRLSHLNLGYNFLNE  292 (325)
Q Consensus       216 l~~~~-l~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~~n~-l~~l~~~~~~~~L~~L~l~~n~i~~  292 (325)
                      +++|. +..+|..++.+++|+.|++.+|. +..++.. + .+++|+.|++++|. +..+|..  .++|+.|++++|.++.
T Consensus       785 Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~-~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~~  860 (1153)
T PLN03210        785 LSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG-I-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIEE  860 (1153)
T ss_pred             CCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC-C-CccccCEEECCCCCcccccccc--ccccCEeECCCCCCcc
Confidence            88774 44778888888889999988874 4445442 2 57888899988864 4456552  3578899999999988


Q ss_pred             ccccc
Q psy11652        293 LILES  297 (325)
Q Consensus       293 ~~~~~  297 (325)
                      +|...
T Consensus       861 iP~si  865 (1153)
T PLN03210        861 VPWWI  865 (1153)
T ss_pred             ChHHH
Confidence            87653

syringae 6; Provisional

>KOG0617|consensus

Probab=99.70  E-value=7e-20  Score=137.81  Aligned_cols=165  Identities=28%  Similarity=0.368  Sum_probs=123.2

Q ss_pred             eec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccc
Q psy11652        131 EFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNS  209 (325)
Q Consensus       131 ~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  209 (325)
                      .++ ...+.+++.|.+++|.++.+|..+..+.+|+.|++++|+++.+|..+.++++|+.|.++.|++... |..|+.+| 
T Consensus        25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~l-prgfgs~p-  102 (264)
T KOG0617|consen   25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNIL-PRGFGSFP-  102 (264)
T ss_pred             hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcC-ccccCCCc-
Confidence            344 446667777777777777776667777777777777777777777777777777777777766544 45677777 


Q ss_pred             cCCEEEccCCCCc--CchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC-CCCCCCCCEEECC
Q psy11652        210 TLEFLDLENNRLT--NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLG  286 (325)
Q Consensus       210 ~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~  286 (325)
                      .|+.||+++|.+.  .+|..|..++.|+.|+++.|++.-+++ .++.+++|+.|.+..|.+.++|. ++.+..|++|+++
T Consensus       103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~-dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiq  181 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP-DVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQ  181 (264)
T ss_pred             hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh-hhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcc
Confidence            7888888887776  667777777778888888887766555 56778888888888888888887 7778888888888


Q ss_pred             CCcCcccccccc
Q psy11652        287 YNFLNELILESS  298 (325)
Q Consensus       287 ~n~i~~~~~~~~  298 (325)
                      +|+++-+|++..
T Consensus       182 gnrl~vlppel~  193 (264)
T KOG0617|consen  182 GNRLTVLPPELA  193 (264)
T ss_pred             cceeeecChhhh
Confidence            888888888753

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.64  E-value=1.6e-16  Score=138.91  Aligned_cols=218  Identities=25%  Similarity=0.253  Sum_probs=101.4

Q ss_pred             cCccEEECCCCccccc-----c-cccCCCCccEEEccCCCCccc--------ccc--cCCccEEEeecCcccch--hhhc
Q psy11652         53 NKLTTLFIGENHIHQI-----E-NLNGFRSILWLNMDSNLLQTL--------DSL--PKTMETLSVANNYLVNY--LELN  114 (325)
Q Consensus        53 ~~L~~L~l~~~~~~~~-----~-~~~~~~~L~~L~l~~~~~~~~--------~~l--~~~L~~L~l~~~~l~~~--~~~~  114 (325)
                      ..|++|+++++.++..     + .+...+++++++++++.+...        ..+  .++|+.|++++|.+...  ..+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            5677777777776432     2 445566677777776655421        112  45666666666555422  2222


Q ss_pred             cC---CCCCEEEccCCcceeec-------CCCC-CCccEEEccCCccccc-----hhhccCCCCccEEEccCCcCccccc
Q psy11652        115 RM---TSLKWIVLSNNYIKEFV-------IPNR-KHIEKLDLSNNLISTI-----NLNLNNTYYIKDLILSYNQISKLNA  178 (325)
Q Consensus       115 ~~---~~L~~L~l~~~~~~~~~-------~~~~-~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~l~~~~~  178 (325)
                      .+   ++|++|++++|.+....       ...+ ++|+.|++++|.++..     ...+..+++|+.|++          
T Consensus       103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l----------  172 (319)
T cd00116         103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL----------  172 (319)
T ss_pred             HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEEC----------
Confidence            22   33555555555544100       1122 4455555555544411     223334444444444          


Q ss_pred             CccCCccccEEEcccCCCcccC----hhhhhCccccCCEEEccCCCCc-----CchHhhhCCCCCCEEeCCCCccccccc
Q psy11652        179 NTFRNLNVFRLYLKFNKISEIH----DFAFNGLNSTLEFLDLENNRLT-----NINQCFRNLKKLKYLYLHNNNIEFIQN  249 (325)
Q Consensus       179 ~~~~~~~L~~L~l~~~~l~~~~----~~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~l~~~~~  249 (325)
                                   ++|.+++..    ...+...+ +|+.|++++|.+.     .++..+..+++|++|++++|.++....
T Consensus       173 -------------~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~  238 (319)
T cd00116         173 -------------ANNGIGDAGIRALAEGLKANC-NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA  238 (319)
T ss_pred             -------------cCCCCchHHHHHHHHHHHhCC-CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence                         444443211    11222333 5555555555443     122234445555555555555543211


Q ss_pred             chhc-----cCccCCEEEccCCCCc-----ccCC-CCCCCCCCEEECCCCcCcccc
Q psy11652        250 NTFE-----HLVNLKSISLSGNKLT-----RIPD-FIHNKRLSHLNLGYNFLNELI  294 (325)
Q Consensus       250 ~~l~-----~~~~L~~L~l~~n~l~-----~l~~-~~~~~~L~~L~l~~n~i~~~~  294 (325)
                      ..+.     ..+.|+.|++++|.++     .+.. +..+++|+.+++++|.++..+
T Consensus       239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~  294 (319)
T cd00116         239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG  294 (319)
T ss_pred             HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence            1111     1245556666655554     1112 334455666666666655443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.63  E-value=7.9e-16  Score=134.53  Aligned_cols=221  Identities=19%  Similarity=0.187  Sum_probs=142.2

Q ss_pred             hhcccccceEEcCCCceeeecCCCc---CcccccCccEEECCCCcccc-------cc-cccCCCCccEEEccCCCCccc-
Q psy11652         23 QISCILLMSAENEDNQIAELETANW---SPEIQNKLTTLFIGENHIHQ-------IE-NLNGFRSILWLNMDSNLLQTL-   90 (325)
Q Consensus        23 ~~~~~~L~~L~l~~~~i~~~~~~~~---~~~~~~~L~~L~l~~~~~~~-------~~-~~~~~~~L~~L~l~~~~~~~~-   90 (325)
                      ...+.+|++++++++.++......+   .... +.+++|+++++.+..       ++ .+..+++|+.|++++|.+... 
T Consensus        19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~-~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~   97 (319)
T cd00116          19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQ-PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG   97 (319)
T ss_pred             HHHHhhccEEeecCCCCcHHHHHHHHHHHhhC-CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence            3466679999999999864322122   0222 679999999987763       12 577799999999999988754 


Q ss_pred             -ccc--cC---CccEEEeecCcccch------hhhccC-CCCCEEEccCCccee-----ec--CCCCCCccEEEccCCcc
Q psy11652         91 -DSL--PK---TMETLSVANNYLVNY------LELNRM-TSLKWIVLSNNYIKE-----FV--IPNRKHIEKLDLSNNLI  150 (325)
Q Consensus        91 -~~l--~~---~L~~L~l~~~~l~~~------~~~~~~-~~L~~L~l~~~~~~~-----~~--~~~~~~L~~L~l~~~~~  150 (325)
                       ..+  ..   +|++|++++|.+...      ..+..+ ++|++|++++|.++.     +.  +..+.+|++|++++|.+
T Consensus        98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l  177 (319)
T cd00116          98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI  177 (319)
T ss_pred             HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence             333  33   499999999987733      456677 899999999999872     22  44667899999999998


Q ss_pred             ccc-----hhhccCCCCccEEEccCCcCccc-----ccCccCCccccEEEcccCCCcccChhhhhC-----ccccCCEEE
Q psy11652        151 STI-----NLNLNNTYYIKDLILSYNQISKL-----NANTFRNLNVFRLYLKFNKISEIHDFAFNG-----LNSTLEFLD  215 (325)
Q Consensus       151 ~~~-----~~~~~~~~~L~~L~l~~~~l~~~-----~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-----~~~~L~~L~  215 (325)
                      +..     +..+..+++|+.|++++|.++..     ...+...++|+.|++++|.+++.....+..     .+ .|+.|+
T Consensus       178 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~-~L~~L~  256 (319)
T cd00116         178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI-SLLTLS  256 (319)
T ss_pred             chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCC-CceEEE
Confidence            742     34456667899999988876522     222222356666666666655432222221     12 555555


Q ss_pred             ccCCCCc-----CchHhhhCCCCCCEEeCCCCccc
Q psy11652        216 LENNRLT-----NINQCFRNLKKLKYLYLHNNNIE  245 (325)
Q Consensus       216 l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~l~  245 (325)
                      +.+|.++     .+...+..+++|+++++++|.++
T Consensus       257 l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         257 LSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             ccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            5555543     12223334445555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617|consensus

Probab=99.62  E-value=6.1e-18  Score=127.43  Aligned_cols=178  Identities=22%  Similarity=0.269  Sum_probs=134.3

Q ss_pred             hhhccCCCCCEEEccCCcceeec--CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccE
Q psy11652        111 LELNRMTSLKWIVLSNNYIKEFV--IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFR  188 (325)
Q Consensus       111 ~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~  188 (325)
                      ..+..+.+++.|.+++|+++.+|  ++.+.+|+.|++.+|+++.+|..++.+++|+.|+++.|++...|..+.+.+.|+.
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev  106 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV  106 (264)
T ss_pred             ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence            34445566777778888888777  6677888888888888888877788888888888888888777777777788888


Q ss_pred             EEcccCCCcc-cChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCC
Q psy11652        189 LYLKFNKISE-IHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNK  267 (325)
Q Consensus       189 L~l~~~~l~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~  267 (325)
                      ||+.+|.+.+ ..|..|-.+. .|+.|++++|.+.-+|...+++++|+.|.++.|.+-..+. .++.+.+|+.|++.+|+
T Consensus       107 ldltynnl~e~~lpgnff~m~-tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpk-eig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMT-TLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPK-EIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hhccccccccccCCcchhHHH-HHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcH-HHHHHHHHHHHhcccce
Confidence            8888887753 3455566676 7888888888888888888888888888888888877665 67778888888888888


Q ss_pred             CcccCC-CCCC---CCCCEEECCCCcC
Q psy11652        268 LTRIPD-FIHN---KRLSHLNLGYNFL  290 (325)
Q Consensus       268 l~~l~~-~~~~---~~L~~L~l~~n~i  290 (325)
                      ++.+|+ ++++   .+-+...+..|++
T Consensus       185 l~vlppel~~l~l~~~k~v~r~E~NPw  211 (264)
T KOG0617|consen  185 LTVLPPELANLDLVGNKQVMRMEENPW  211 (264)
T ss_pred             eeecChhhhhhhhhhhHHHHhhhhCCC
Confidence            888887 4433   2333445555554

>KOG1259|consensus

Probab=99.37  E-value=1.3e-13  Score=113.26  Aligned_cols=199  Identities=21%  Similarity=0.187  Sum_probs=139.3

Q ss_pred             cCCccEEEeecCcccch-hhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCc-cccc-hhhccCCCCccEEEcc
Q psy11652         94 PKTMETLSVANNYLVNY-LELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNL-ISTI-NLNLNNTYYIKDLILS  169 (325)
Q Consensus        94 ~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~L~~L~l~  169 (325)
                      +.+|+.+.++++.-..+ .....-|.|.++......++..| ......+.....+.-. .++. -..+...+.|++++++
T Consensus       213 f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS  292 (490)
T KOG1259|consen  213 FRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLS  292 (490)
T ss_pred             hhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcccc
Confidence            45566666665544444 22223355555555544444433 2122222222221111 1111 1122334678899999


Q ss_pred             CCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCccccccc
Q psy11652        170 YNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQN  249 (325)
Q Consensus       170 ~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~  249 (325)
                      +|.++.+...+--.++++.|+++.|.+..+.  .+..++ +|+.||+++|.++.+..+-.++.+++.|.+.+|.+.... 
T Consensus       293 ~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~-~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-  368 (490)
T KOG1259|consen  293 GNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELP-QLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS-  368 (490)
T ss_pred             ccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcc-cceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh-
Confidence            9998888876644499999999999998775  477888 999999999999988888889999999999999887654 


Q ss_pred             chhccCccCCEEEccCCCCcccCC---CCCCCCCCEEECCCCcCccccccc
Q psy11652        250 NTFEHLVNLKSISLSGNKLTRIPD---FIHNKRLSHLNLGYNFLNELILES  297 (325)
Q Consensus       250 ~~l~~~~~L~~L~l~~n~l~~l~~---~~~~~~L~~L~l~~n~i~~~~~~~  297 (325)
                       .++.+-+|..||+.+|+|..+..   ++.+|.|+.+.+.+|++..+++..
T Consensus       369 -GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYR  418 (490)
T KOG1259|consen  369 -GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYR  418 (490)
T ss_pred             -hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHH
Confidence             36677899999999999986554   899999999999999999998875

>KOG3207|consensus

Probab=99.33  E-value=1.7e-13  Score=117.64  Aligned_cols=151  Identities=18%  Similarity=0.207  Sum_probs=92.7

Q ss_pred             ccCCCCccEEEccCCCCccc--ccc---cCCccEEEeecCcccch----hhhccCCCCCEEEccCCcceeec----CCCC
Q psy11652         71 LNGFRSILWLNMDSNLLQTL--DSL---PKTMETLSVANNYLVNY----LELNRMTSLKWIVLSNNYIKEFV----IPNR  137 (325)
Q Consensus        71 ~~~~~~L~~L~l~~~~~~~~--~~l---~~~L~~L~l~~~~l~~~----~~~~~~~~L~~L~l~~~~~~~~~----~~~~  137 (325)
                      -.++.+|+.+.++++.+...  .+.   +++++.|++++|-+...    ....++|+|+.|+++.|.+....    ...+
T Consensus       117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            34577888888888776665  223   88888888888877666    56778888888888888776322    4467


Q ss_pred             CCccEEEccCCccccc--hhhccCCCCccEEEccCCc-CcccccCccCCccccEEEcccCCCcccC-hhhhhCccccCCE
Q psy11652        138 KHIEKLDLSNNLISTI--NLNLNNTYYIKDLILSYNQ-ISKLNANTFRNLNVFRLYLKFNKISEIH-DFAFNGLNSTLEF  213 (325)
Q Consensus       138 ~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~~L~~  213 (325)
                      ++++.|.++.|+++.-  ......+|+|+.|++.+|. +.......--.+.|+.|++++|.+-..+ ......+| .|..
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~-~L~~  275 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP-GLNQ  275 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccccc-chhh
Confidence            7788888888877643  3344566777777777774 2111111111255556666665443322 12233344 5555


Q ss_pred             EEccCCCCc
Q psy11652        214 LDLENNRLT  222 (325)
Q Consensus       214 L~l~~~~l~  222 (325)
                      |+++.+++.
T Consensus       276 Lnls~tgi~  284 (505)
T KOG3207|consen  276 LNLSSTGIA  284 (505)
T ss_pred             hhccccCcc
Confidence            555555544

>KOG1259|consensus

Probab=99.29  E-value=9e-13  Score=108.29  Aligned_cols=124  Identities=27%  Similarity=0.287  Sum_probs=52.8

Q ss_pred             CCCCEEEccCCcceeec--CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccC
Q psy11652        117 TSLKWIVLSNNYIKEFV--IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFN  194 (325)
Q Consensus       117 ~~L~~L~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~  194 (325)
                      ..|+++++++|.++.+.  ..-.+.++.|+++.|.+..+.. +..+++|+.|++++|.+..+..+-..+-++++|.+++|
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N  362 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN  362 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence            34444555555444333  2334445555555555444411 44444555555555544444433333344444444444


Q ss_pred             CCcccChhhhhCccccCCEEEccCCCCcCchH--hhhCCCCCCEEeCCCCcc
Q psy11652        195 KISEIHDFAFNGLNSTLEFLDLENNRLTNINQ--CFRNLKKLKYLYLHNNNI  244 (325)
Q Consensus       195 ~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~l  244 (325)
                      .+..+.  .+..+. +|..||+++|.|..+..  .+++++.|..+.+.+|.+
T Consensus       363 ~iE~LS--GL~KLY-SLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  363 KIETLS--GLRKLY-SLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hHhhhh--hhHhhh-hheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            443331  223333 44444444444443322  333344444444444433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.29  E-value=1.9e-12  Score=101.15  Aligned_cols=116  Identities=25%  Similarity=0.318  Sum_probs=32.1

Q ss_pred             CccEEECCCCccccccccc-CCCCccEEEccCCCCcccccc--cCCccEEEeecCcccch-hhh-ccCCCCCEEEccCCc
Q psy11652         54 KLTTLFIGENHIHQIENLN-GFRSILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNY-LEL-NRMTSLKWIVLSNNY  128 (325)
Q Consensus        54 ~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l~~~~l~~~-~~~-~~~~~L~~L~l~~~~  128 (325)
                      .+++|+|+++.|+.+..+. .+.+|+.|++++|.+..++.+  +++|+.|++++|.++.+ ..+ ..+++|++|++++|.
T Consensus        20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~   99 (175)
T PF14580_consen   20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNK   99 (175)
T ss_dssp             ----------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS-
T ss_pred             ccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCc
Confidence            4455555555555444333 344555555555555554444  45555555555555544 222 235555555555555


Q ss_pred             ceeec----CCCCCCccEEEccCCccccc----hhhccCCCCccEEEcc
Q psy11652        129 IKEFV----IPNRKHIEKLDLSNNLISTI----NLNLNNTYYIKDLILS  169 (325)
Q Consensus       129 ~~~~~----~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~L~~L~l~  169 (325)
                      +..+.    ...+++|+.|++.+|+++..    ...+..+|+|+.|+-.
T Consensus       100 I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen  100 ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             --SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            54322    33455555555555555433    2335556666666543

>KOG3207|consensus

Probab=99.28  E-value=5.7e-13  Score=114.43  Aligned_cols=172  Identities=20%  Similarity=0.171  Sum_probs=95.5

Q ss_pred             hcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc----cccCCCCccEEEccCCCCccc-cc----cc
Q psy11652         24 ISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE----NLNGFRSILWLNMDSNLLQTL-DS----LP   94 (325)
Q Consensus        24 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~-~~----l~   94 (325)
                      .+..+|+...+.++.+...+.... .+.+++++.|+|+.|-+..+.    ....+|+|+.|+++.|++... ++    ..
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~-~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEY-SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCccccccchhhh-hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            355666666666666665554333 344466777777666555443    344566677777766665544 11    16


Q ss_pred             CCccEEEeecCcccch---hhhccCCCCCEEEccCCcce---eecCCCCCCccEEEccCCccccch--hhccCCCCccEE
Q psy11652         95 KTMETLSVANNYLVNY---LELNRMTSLKWIVLSNNYIK---EFVIPNRKHIEKLDLSNNLISTIN--LNLNNTYYIKDL  166 (325)
Q Consensus        95 ~~L~~L~l~~~~l~~~---~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L  166 (325)
                      +.|+.|.++.|.++.-   ..+..+|+|++|++..|...   ..+...++.|+.|++++|.+...+  ...+.++.|+.|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            6666666666666533   44555666666666666321   222445566666666666655542  334556666666


Q ss_pred             EccCCcCcccccCcc-------CCccccEEEcccCCC
Q psy11652        167 ILSYNQISKLNANTF-------RNLNVFRLYLKFNKI  196 (325)
Q Consensus       167 ~l~~~~l~~~~~~~~-------~~~~L~~L~l~~~~l  196 (325)
                      ++..+.+.++.....       ..++|++|++..|.+
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            666665553322111       124555555555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.27  E-value=4.2e-12  Score=99.31  Aligned_cols=119  Identities=23%  Similarity=0.318  Sum_probs=39.3

Q ss_pred             cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCccc-ccc---cCCccEE
Q psy11652         25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTL-DSL---PKTMETL  100 (325)
Q Consensus        25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~l---~~~L~~L  100 (325)
                      ++.++++|+++++.|+.+..  + +....+|+.|++++|.+..++.+..++.|++|++++|.+.++ +.+   +++|++|
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~--L-~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIEN--L-GATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S-----TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             cccccccccccccccccccc--h-hhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            44456777777777776654  2 222266777777777777666666677777777777777666 333   5677777


Q ss_pred             EeecCcccch---hhhccCCCCCEEEccCCcceeec------CCCCCCccEEEcc
Q psy11652        101 SVANNYLVNY---LELNRMTSLKWIVLSNNYIKEFV------IPNRKHIEKLDLS  146 (325)
Q Consensus       101 ~l~~~~l~~~---~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~L~~L~l~  146 (325)
                      ++++|.+...   ..+..+++|+.|++.+|.++.-+      +..+|+|+.||-.
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            7777766555   56666677777777777666333      3356666666543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.26  E-value=9.3e-12  Score=112.09  Aligned_cols=195  Identities=33%  Similarity=0.368  Sum_probs=140.6

Q ss_pred             EEEeecCcc-cchhhhccCCCCCEEEccCCcceeec-CC-CC-CCccEEEccCCccccchhhccCCCCccEEEccCCcCc
Q psy11652         99 TLSVANNYL-VNYLELNRMTSLKWIVLSNNYIKEFV-IP-NR-KHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQIS  174 (325)
Q Consensus        99 ~L~l~~~~l-~~~~~~~~~~~L~~L~l~~~~~~~~~-~~-~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  174 (325)
                      .+....+.+ .....+...+.++.+.+.++.++.++ .. .. ++|+.|++++|.+..++..+..+++|+.|++..|++.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~  176 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS  176 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence            466666665 33355555677888888888888777 33 33 2788888888888877666778888888888888888


Q ss_pred             ccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhcc
Q psy11652        175 KLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEH  254 (325)
Q Consensus       175 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~  254 (325)
                      .++......+.++.|++++|.+..+++..  ..+..++++.+++|.+...+..+..+.++..+.+.+|++...+ ..++.
T Consensus       177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~--~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~-~~~~~  253 (394)
T COG4886         177 DLPKLLSNLSNLNNLDLSGNKISDLPPEI--ELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLP-ESIGN  253 (394)
T ss_pred             hhhhhhhhhhhhhheeccCCccccCchhh--hhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeecc-chhcc
Confidence            77776556688888888888888776431  2332588888888865556666777778888887777766542 25666


Q ss_pred             CccCCEEEccCCCCcccCCCCCCCCCCEEECCCCcCcccccc
Q psy11652        255 LVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILE  296 (325)
Q Consensus       255 ~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~i~~~~~~  296 (325)
                      ++.++.|++++|.++.++.++...+++.+++++|.+..+++.
T Consensus       254 l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         254 LSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             ccccceeccccccccccccccccCccCEEeccCccccccchh
Confidence            777888888888888777777778888888888877765444

>KOG1909|consensus

Probab=99.23  E-value=8.1e-13  Score=110.48  Aligned_cols=130  Identities=24%  Similarity=0.277  Sum_probs=59.6

Q ss_pred             CCCccEEEccCCcCcccccC----ccC-CccccEEEcccCCCccc----ChhhhhCccccCCEEEccCCCCc-----Cch
Q psy11652        160 TYYIKDLILSYNQISKLNAN----TFR-NLNVFRLYLKFNKISEI----HDFAFNGLNSTLEFLDLENNRLT-----NIN  225 (325)
Q Consensus       160 ~~~L~~L~l~~~~l~~~~~~----~~~-~~~L~~L~l~~~~l~~~----~~~~~~~~~~~L~~L~l~~~~l~-----~~~  225 (325)
                      .+.|+.++..+|++...+..    .++ .+.|+.+.++.|.|..-    ....|..++ .|+.|++.+|-++     .+.
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~-~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP-HLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCC-cceeeecccchhhhHHHHHHH
Confidence            34455555555554422211    111 14455555555544321    123344444 5555555555444     222


Q ss_pred             HhhhCCCCCCEEeCCCCcccccc-----cchhccCccCCEEEccCCCCc-----ccCC-CCCCCCCCEEECCCCcC
Q psy11652        226 QCFRNLKKLKYLYLHNNNIEFIQ-----NNTFEHLVNLKSISLSGNKLT-----RIPD-FIHNKRLSHLNLGYNFL  290 (325)
Q Consensus       226 ~~~~~~~~L~~L~l~~~~l~~~~-----~~~l~~~~~L~~L~l~~n~l~-----~l~~-~~~~~~L~~L~l~~n~i  290 (325)
                      ..+..+++|+.++++.|.+..-.     ...-...++|+.+.+.+|.++     .+.. +...+.|..|++++|.+
T Consensus       235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            34555555666666555544211     111122355666666666555     1111 34455566666666665

>KOG1909|consensus

Probab=99.20  E-value=1.5e-11  Score=103.05  Aligned_cols=220  Identities=17%  Similarity=0.162  Sum_probs=156.2

Q ss_pred             cCCccEEEeecCcccch------hhhccCCCCCEEEccCCcce----eec---------CCCCCCccEEEccCCccccc-
Q psy11652         94 PKTMETLSVANNYLVNY------LELNRMTSLKWIVLSNNYIK----EFV---------IPNRKHIEKLDLSNNLISTI-  153 (325)
Q Consensus        94 ~~~L~~L~l~~~~l~~~------~~~~~~~~L~~L~l~~~~~~----~~~---------~~~~~~L~~L~l~~~~~~~~-  153 (325)
                      ...++.+++++|.+..-      ..+.+.+.|+..++++-...    .+|         ...+++|++|++++|.+..- 
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            56677777777765433      45566667777776643211    222         23566888889888887643 


Q ss_pred             ----hhhccCCCCccEEEccCCcCcccc--------------cCccCCccccEEEcccCCCcccCh----hhhhCccccC
Q psy11652        154 ----NLNLNNTYYIKDLILSYNQISKLN--------------ANTFRNLNVFRLYLKFNKISEIHD----FAFNGLNSTL  211 (325)
Q Consensus       154 ----~~~~~~~~~L~~L~l~~~~l~~~~--------------~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~~L  211 (325)
                          ...++++.+|++|++.+|.+....              ..+...++|+.+...+|++.....    ..|...+ +|
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~-~l  187 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP-TL  187 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc-cc
Confidence                234677888999999998876222              223334889999999999876543    4556676 99


Q ss_pred             CEEEccCCCCc--C---chHhhhCCCCCCEEeCCCCccccc----ccchhccCccCCEEEccCCCCcc-----cCC--CC
Q psy11652        212 EFLDLENNRLT--N---INQCFRNLKKLKYLYLHNNNIEFI----QNNTFEHLVNLKSISLSGNKLTR-----IPD--FI  275 (325)
Q Consensus       212 ~~L~l~~~~l~--~---~~~~~~~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~L~l~~n~l~~-----l~~--~~  275 (325)
                      +.+.+..|.|.  .   +...+..|++|+.|+++.|-++.-    ....++.|++|+.+++++|.+..     +..  -.
T Consensus       188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~  267 (382)
T KOG1909|consen  188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE  267 (382)
T ss_pred             ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence            99999999886  2   234789999999999999988742    23466778999999999998872     222  34


Q ss_pred             CCCCCCEEECCCCcCcccccccc----cchhhhcccccccccc
Q psy11652        276 HNKRLSHLNLGYNFLNELILESS----IVENEIIDQNMLFNSN  314 (325)
Q Consensus       276 ~~~~L~~L~l~~n~i~~~~~~~~----~~~~~~~~~~~~~~~~  314 (325)
                      ..|+|+++.+.+|.|+.-.....    .....+..+++.+|++
T Consensus       268 ~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  268 SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            47899999999999986544432    1234577788888888

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.17  E-value=3.8e-11  Score=108.18  Aligned_cols=188  Identities=26%  Similarity=0.353  Sum_probs=124.8

Q ss_pred             EEECCCCccc-ccccccCCCCccEEEccCCCCccccc-c--cC-CccEEEeecCcccch-hhhccCCCCCEEEccCCcce
Q psy11652         57 TLFIGENHIH-QIENLNGFRSILWLNMDSNLLQTLDS-L--PK-TMETLSVANNYLVNY-LELNRMTSLKWIVLSNNYIK  130 (325)
Q Consensus        57 ~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-l--~~-~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~  130 (325)
                      .++...+.+. ........+.++.+++.++.+.++.. .  .. +|+.|++++|.+..+ ..+..+++|+.|+++.|.+.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~  176 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS  176 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence            4666666553 32244555677777777777777722 2  42 777777777777777 57777777777777777777


Q ss_pred             eec-CC-CCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCcc
Q psy11652        131 EFV-IP-NRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLN  208 (325)
Q Consensus       131 ~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~  208 (325)
                      .++ .. ..+.|+.|++++|.+..+|........|+.+.+.+|.+...+.......++..+.+.++.+... +..+..++
T Consensus       177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~  255 (394)
T COG4886         177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLS  255 (394)
T ss_pred             hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec-cchhcccc
Confidence            777 22 6777777777777777775544455557777777775555555555556677777777666543 23445555


Q ss_pred             ccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCccccc
Q psy11652        209 STLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFI  247 (325)
Q Consensus       209 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~  247 (325)
                       +++.+++++|.+..++. ++...+++.|+++++.+...
T Consensus       256 -~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         256 -NLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             -ccceecccccccccccc-ccccCccCEEeccCcccccc
Confidence             67777777777776666 66777777777777766544

>KOG0532|consensus

Probab=99.10  E-value=1.8e-12  Score=114.83  Aligned_cols=174  Identities=23%  Similarity=0.267  Sum_probs=104.3

Q ss_pred             cCCccEEEeecCcccch-hhhccCCCCCEEEccCCcceeec--CCCCCCccEEEccCCccccchhhccCCCCccEEEccC
Q psy11652         94 PKTMETLSVANNYLVNY-LELNRMTSLKWIVLSNNYIKEFV--IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSY  170 (325)
Q Consensus        94 ~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  170 (325)
                      +..-...+++.|.+..+ ..+..+..|+.+.++.|.+..+|  ...+..|++++++.|.+..+|..+..++ |+.|.+++
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence            33444556666666666 55555566666666666666655  5566667777777776666655554444 66666666


Q ss_pred             CcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccc
Q psy11652        171 NQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNN  250 (325)
Q Consensus       171 ~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  250 (325)
                      |+++.++..+.....|..|+++.|.+..+++ .+..+. +|+.+.+..|++..+|..+. .-.|..|+++.|++..+|. 
T Consensus       153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slps-ql~~l~-slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv-  228 (722)
T KOG0532|consen  153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPS-QLGYLT-SLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPV-  228 (722)
T ss_pred             CccccCCcccccchhHHHhhhhhhhhhhchH-HhhhHH-HHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecch-
Confidence            6666666666533666666666666655543 344554 56666666666666665554 3345556666666655544 


Q ss_pred             hhccCccCCEEEccCCCCcccC
Q psy11652        251 TFEHLVNLKSISLSGNKLTRIP  272 (325)
Q Consensus       251 ~l~~~~~L~~L~l~~n~l~~l~  272 (325)
                      .|..+..|++|-|.+|.+++=|
T Consensus       229 ~fr~m~~Lq~l~LenNPLqSPP  250 (722)
T KOG0532|consen  229 DFRKMRHLQVLQLENNPLQSPP  250 (722)
T ss_pred             hhhhhhhheeeeeccCCCCCCh
Confidence            4555666666666666666433

>KOG0531|consensus

Probab=99.04  E-value=2.2e-11  Score=110.11  Aligned_cols=238  Identities=27%  Similarity=0.314  Sum_probs=164.5

Q ss_pred             cCccEEECCCCcccccc-cccCCCCccEEEccCCCCccccc-c--cCCccEEEeecCcccchhhhccCCCCCEEEccCCc
Q psy11652         53 NKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTLDS-L--PKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNY  128 (325)
Q Consensus        53 ~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-l--~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~  128 (325)
                      ..++.+.++.+.+..+. .+..+.+|..+++.+|.+..+.. +  +++|++|++++|.++.+..+..++.|+.|++.+|.
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~  151 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNL  151 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCc
Confidence            56777777777777644 57778888888888888887755 5  88888888888888888777777778888888888


Q ss_pred             ceeec-CCCCCCccEEEccCCccccchhh-ccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhC
Q psy11652        129 IKEFV-IPNRKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNG  206 (325)
Q Consensus       129 ~~~~~-~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~  206 (325)
                      +..+. +..+..|+.+++++|.+..+... ...+.+++.+.+.+|.+..+... -....+..+++..|.++.+.+..  .
T Consensus       152 i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~-~~~~~l~~~~l~~n~i~~~~~l~--~  228 (414)
T KOG0531|consen  152 ISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGL-DLLKKLVLLSLLDNKISKLEGLN--E  228 (414)
T ss_pred             chhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccch-HHHHHHHHhhcccccceeccCcc--c
Confidence            88777 55688888888888888777321 46677888888888876654432 12345555577777776554221  2


Q ss_pred             cccc--CCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCc---c-cCC--CCCCC
Q psy11652        207 LNST--LEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT---R-IPD--FIHNK  278 (325)
Q Consensus       207 ~~~~--L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~---~-l~~--~~~~~  278 (325)
                      .. .  |+.+++.++.+...+..+..+..+..+++..+.+.....  +...+.+..+....+.+.   . ...  ....+
T Consensus       229 ~~-~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (414)
T KOG0531|consen  229 LV-MLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLALSEAISQEYITSAAP  305 (414)
T ss_pred             ch-hHHHHHHhcccCccccccccccccccccccchhhcccccccc--ccccchHHHhccCcchhcchhhhhccccccccc
Confidence            22 2  778888888877665556677778888888877665433  334456666666666655   1 111  45567


Q ss_pred             CCCEEECCCCcCcccccc
Q psy11652        279 RLSHLNLGYNFLNELILE  296 (325)
Q Consensus       279 ~L~~L~l~~n~i~~~~~~  296 (325)
                      .++.+.+.+|++......
T Consensus       306 ~~~~~~~~~~~~~~~~~~  323 (414)
T KOG0531|consen  306 TLVTLTLELNPIRKISSL  323 (414)
T ss_pred             cccccccccCcccccccc
Confidence            788888888887765543

>KOG0532|consensus

Probab=99.04  E-value=8.2e-12  Score=110.78  Aligned_cols=188  Identities=18%  Similarity=0.250  Sum_probs=131.4

Q ss_pred             EECCCCcccccc--cc-cCCCCccEEEccCCCCccc-ccc--cCCccEEEeecCcccch-hhhccCCCCCEEEccCCcce
Q psy11652         58 LFIGENHIHQIE--NL-NGFRSILWLNMDSNLLQTL-DSL--PKTMETLSVANNYLVNY-LELNRMTSLKWIVLSNNYIK  130 (325)
Q Consensus        58 L~l~~~~~~~~~--~~-~~~~~L~~L~l~~~~~~~~-~~l--~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~  130 (325)
                      |.|++-.+...|  +. -.+.--...|++.|++..+ .++  +..|..+.+..|.+..+ ..+.++..|..++++.|.++
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS  134 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS  134 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh
Confidence            444444444444  11 2233445566777777666 444  66777777777777777 77777778888888888887


Q ss_pred             eec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccc
Q psy11652        131 EFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNS  209 (325)
Q Consensus       131 ~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  209 (325)
                      .+| -...--|+.|-+++|.++.+|..++..+.|..|+.+.|.+..+++.+....+|+.|.+..|.+..++++ +..+  
T Consensus       135 ~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~E-l~~L--  211 (722)
T KOG0532|consen  135 HLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEE-LCSL--  211 (722)
T ss_pred             cCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHH-HhCC--
Confidence            777 344556777777888887777777777777788888887777777777777888888888877777653 3455  


Q ss_pred             cCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccc
Q psy11652        210 TLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQ  248 (325)
Q Consensus       210 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~  248 (325)
                      .|..||++.|++..+|..|.++..|++|-+.+|.+..-+
T Consensus       212 pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPP  250 (722)
T KOG0532|consen  212 PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPP  250 (722)
T ss_pred             ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCCh
Confidence            377788888888888878888888888888888776533

>KOG0531|consensus

Probab=98.93  E-value=8.8e-11  Score=106.18  Aligned_cols=237  Identities=28%  Similarity=0.359  Sum_probs=162.0

Q ss_pred             cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCccccccc-ccCCCCccEEEccCCCCcccccc--cCCccEEE
Q psy11652         25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN-LNGFRSILWLNMDSNLLQTLDSL--PKTMETLS  101 (325)
Q Consensus        25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~  101 (325)
                      .+..+..+++..+.|+.+.. .+ +.+ .+|+.|++.++.+..+.. +..+++|++|++++|.+.++..+  ++.|+.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~-~l-~~~-~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~  146 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILN-HL-SKL-KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELN  146 (414)
T ss_pred             HhHhHHhhccchhhhhhhhc-cc-ccc-cceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhhe
Confidence            56677777788888877333 34 445 899999999999998885 88899999999999999988666  77799999


Q ss_pred             eecCcccchhhhccCCCCCEEEccCCcceeecC---CCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCccccc
Q psy11652        102 VANNYLVNYLELNRMTSLKWIVLSNNYIKEFVI---PNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNA  178 (325)
Q Consensus       102 l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  178 (325)
                      +.+|.++.+..+..++.|+.+++++|.+..+..   ..+.+++.+++.+|.+..+ ..+..+..+..+++..|.+..+..
T Consensus       147 l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i-~~~~~~~~l~~~~l~~n~i~~~~~  225 (414)
T KOG0531|consen  147 LSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI-EGLDLLKKLVLLSLLDNKISKLEG  225 (414)
T ss_pred             eccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc-cchHHHHHHHHhhcccccceeccC
Confidence            999999988777779999999999999887774   6778888889999888765 123333444445667776665443


Q ss_pred             CccCCc--cccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccc---ccc-chh
Q psy11652        179 NTFRNL--NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEF---IQN-NTF  252 (325)
Q Consensus       179 ~~~~~~--~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~---~~~-~~l  252 (325)
                      .. ...  +|+.++++++++.... ..+..+. .+..+++..+.+..+.. +.....+..+....+.+..   ... ...
T Consensus       226 l~-~~~~~~L~~l~l~~n~i~~~~-~~~~~~~-~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (414)
T KOG0531|consen  226 LN-ELVMLHLRELYLSGNRISRSP-EGLENLK-NLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKLALSEAISQEYIT  301 (414)
T ss_pred             cc-cchhHHHHHHhcccCcccccc-ccccccc-cccccchhhcccccccc-ccccchHHHhccCcchhcchhhhhccccc
Confidence            22 122  3788888888877652 2344555 77777777776654432 2233444444444444331   111 113


Q ss_pred             ccCccCCEEEccCCCCc
Q psy11652        253 EHLVNLKSISLSGNKLT  269 (325)
Q Consensus       253 ~~~~~L~~L~l~~n~l~  269 (325)
                      +..+.++...+.++.+.
T Consensus       302 ~~~~~~~~~~~~~~~~~  318 (414)
T KOG0531|consen  302 SAAPTLVTLTLELNPIR  318 (414)
T ss_pred             cccccccccccccCccc
Confidence            34456677777766655

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=2.5e-09  Score=68.91  Aligned_cols=59  Identities=20%  Similarity=0.388  Sum_probs=53.3

Q ss_pred             cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCC
Q psy11652         27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLL   87 (325)
Q Consensus        27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~   87 (325)
                      |+|++|++++|.++.++...| ..+ ++|++|++++|.+..++  .|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f-~~l-~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSF-SNL-PNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTT-TTG-TTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHH-cCC-CCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            578999999999999998778 777 99999999999999888  899999999999999864

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.89  E-value=1.5e-09  Score=69.97  Aligned_cols=58  Identities=40%  Similarity=0.543  Sum_probs=35.3

Q ss_pred             CCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcC
Q psy11652        233 KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFL  290 (325)
Q Consensus       233 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i  290 (325)
                      +|++|++++|+++.+++..|.++++|+.|++++|.++.+++  |..+++|+.|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            45566666666666655566666666666666666665554  56666666666666653

...

>KOG1859|consensus

Probab=98.67  E-value=9.9e-10  Score=100.49  Aligned_cols=131  Identities=24%  Similarity=0.255  Sum_probs=86.5

Q ss_pred             ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEc
Q psy11652        184 LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISL  263 (325)
Q Consensus       184 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l  263 (325)
                      ..|.+.+++.|.+..+. ..+.-++ .++.|++++|++..+. .+..|++|++|+++-|+++.++.....++. |+.|.+
T Consensus       164 n~L~~a~fsyN~L~~mD-~SLqll~-ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  164 NKLATASFSYNRLVLMD-ESLQLLP-ALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hhHhhhhcchhhHHhHH-HHHHHHH-HhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence            45666677777665443 3455555 7777777777777665 466777777777777777776665555554 777777


Q ss_pred             cCCCCcccCCCCCCCCCCEEECCCCcCcccccc-cccchhhhcccccccccceeec
Q psy11652        264 SGNKLTRIPDFIHNKRLSHLNLGYNFLNELILE-SSIVENEIIDQNMLFNSNAVME  318 (325)
Q Consensus       264 ~~n~l~~l~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  318 (325)
                      +||.++.+-.+.++.+|+.||+++|-|.+-..- ..+...++..+.+.+|.+++-|
T Consensus       240 rnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  240 RNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             cccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            777777666667777777777777766554333 2344556666777777776543

>KOG4658|consensus

Probab=98.65  E-value=2.8e-08  Score=96.61  Aligned_cols=100  Identities=15%  Similarity=0.178  Sum_probs=53.6

Q ss_pred             cccccceEEcCCCc--eeeecCCCcCcccccCccEEECCCC-cccccc-cccCCCCccEEEccCCCCccc-ccc--cCCc
Q psy11652         25 SCILLMSAENEDNQ--IAELETANWSPEIQNKLTTLFIGEN-HIHQIE-NLNGFRSILWLNMDSNLLQTL-DSL--PKTM   97 (325)
Q Consensus        25 ~~~~L~~L~l~~~~--i~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~l--~~~L   97 (325)
                      .|++|++|-+..+.  +..++..-| ..+ |.|+.|++++| .+..+| .++++-+||+|+++++.+..+ .++  +..|
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff-~~m-~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFF-RSL-PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKL  620 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHH-hhC-cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhh
Confidence            55566666666554  455555222 333 66666666654 345556 556666666666666666555 444  5566


Q ss_pred             cEEEeecCccc-ch-hhhccCCCCCEEEccC
Q psy11652         98 ETLSVANNYLV-NY-LELNRMTSLKWIVLSN  126 (325)
Q Consensus        98 ~~L~l~~~~l~-~~-~~~~~~~~L~~L~l~~  126 (325)
                      .+|++..+... .+ .....+.+|++|.+..
T Consensus       621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  621 IYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             heeccccccccccccchhhhcccccEEEeec
Confidence            66666554321 11 2333355666665543

>KOG2982|consensus

Probab=98.61  E-value=2.1e-08  Score=82.82  Aligned_cols=196  Identities=17%  Similarity=0.178  Sum_probs=98.7

Q ss_pred             cCCccEEEeecCcccch----hhhccCCCCCEEEccCCccee-ec--CCCCCCccEEEccCCccccc--hhhccCCCCcc
Q psy11652         94 PKTMETLSVANNYLVNY----LELNRMTSLKWIVLSNNYIKE-FV--IPNRKHIEKLDLSNNLISTI--NLNLNNTYYIK  164 (325)
Q Consensus        94 ~~~L~~L~l~~~~l~~~----~~~~~~~~L~~L~l~~~~~~~-~~--~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~  164 (325)
                      .+.++.+++.+|.++..    ..+.++|.|++|+++.|.+.. +.  .....+|+.|-+.+..+...  -..+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            55666666666655544    345566666666666665542 22  13455666666655554322  23345566666


Q ss_pred             EEEccCCcCccccc--CccC--CccccEEEcccCCCcc-cChhhhh-CccccCCEEEccCCCCcCchH--hhhCCCCCCE
Q psy11652        165 DLILSYNQISKLNA--NTFR--NLNVFRLYLKFNKISE-IHDFAFN-GLNSTLEFLDLENNRLTNINQ--CFRNLKKLKY  236 (325)
Q Consensus       165 ~L~l~~~~l~~~~~--~~~~--~~~L~~L~l~~~~l~~-~~~~~~~-~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~  236 (325)
                      +|+++.|.+..+..  .-..  .+.++++.+-+|.... .....+. .+| ++..+-+-.+.+.....  .+..++.+..
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp-nv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP-NVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc-cchheeeecCcccchhhcccCCCCCcchh
Confidence            66666664432211  1111  1345555554443321 1111111 233 66666666665543322  3444555666


Q ss_pred             EeCCCCccccccc-chhccCccCCEEEccCCCCc-cc----CC---CCCCCCCCEEECCCCcCcc
Q psy11652        237 LYLHNNNIEFIQN-NTFEHLVNLKSISLSGNKLT-RI----PD---FIHNKRLSHLNLGYNFLNE  292 (325)
Q Consensus       237 L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~l~-~l----~~---~~~~~~L~~L~l~~n~i~~  292 (325)
                      |+++.+++..+.. ..+.++++|..|.+.++.+. .+    +.   ++.+++++.|+=  .+|+.
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG--skIss  291 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG--SKISS  291 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC--cccch
Confidence            6777666665332 24556677777777776665 11    11   566666666543  25543

>KOG1859|consensus

Probab=98.58  E-value=3.5e-10  Score=103.33  Aligned_cols=126  Identities=26%  Similarity=0.283  Sum_probs=97.8

Q ss_pred             CccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCC
Q psy11652        162 YIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLH  240 (325)
Q Consensus       162 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~  240 (325)
                      .|...+.+.|.+..+...+.-.+.++.|+++.|+++...  ++..++ .|+.||+++|.+..+|. ...+|. |..|.++
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~-~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLP-KLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcc-cccccccccchhccccccchhhhh-heeeeec
Confidence            466677777777766655443488999999999988774  778888 99999999999888876 334444 8999999


Q ss_pred             CCcccccccchhccCccCCEEEccCCCCcccCC---CCCCCCCCEEECCCCcCccc
Q psy11652        241 NNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD---FIHNKRLSHLNLGYNFLNEL  293 (325)
Q Consensus       241 ~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~---~~~~~~L~~L~l~~n~i~~~  293 (325)
                      +|.++.+..  +.++.+|+.||+++|-+.....   ++.+..|+.|.+.||++-.=
T Consensus       241 nN~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  241 NNALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             ccHHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            998876543  6778899999999998885443   67777889999999988543

>KOG4658|consensus

Probab=98.57  E-value=4.3e-08  Score=95.31  Aligned_cols=78  Identities=15%  Similarity=0.279  Sum_probs=40.5

Q ss_pred             cccccceEEcCC-CceeeecCCCcCcccccCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc-ccc---cCCcc
Q psy11652         25 SCILLMSAENED-NQIAELETANWSPEIQNKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL-DSL---PKTME   98 (325)
Q Consensus        25 ~~~~L~~L~l~~-~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~l---~~~L~   98 (325)
                      .++.|+.||+++ ..+..+|. .+ +++ -+|++|+++++.+..+| .+.+++.|.+|++..+..... ...   +++|+
T Consensus       569 ~m~~LrVLDLs~~~~l~~LP~-~I-~~L-i~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  569 SLPLLRVLDLSGNSSLSKLPS-SI-GEL-VHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             hCcceEEEECCCCCccCcCCh-HH-hhh-hhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence            455566666653 34445555 44 444 45566666655555555 555555566665554432222 111   55555


Q ss_pred             EEEeecC
Q psy11652         99 TLSVANN  105 (325)
Q Consensus        99 ~L~l~~~  105 (325)
                      +|.+...
T Consensus       646 ~L~l~~s  652 (889)
T KOG4658|consen  646 VLRLPRS  652 (889)
T ss_pred             EEEeecc
Confidence            5555444

>PLN03150 hypothetical protein; Provisional

Probab=98.57  E-value=2.6e-07  Score=87.73  Aligned_cols=103  Identities=21%  Similarity=0.276  Sum_probs=62.4

Q ss_pred             ccEEEcccCCCcccChhhhhCccccCCEEEccCCCCc-CchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEcc
Q psy11652        186 VFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS  264 (325)
Q Consensus       186 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~  264 (325)
                      +..|+++++.+.+..+..+..++ +|+.|++++|.+. .+|..+..+++|+.|++++|.+++..+..++.+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            55566666666655555666666 6666666666665 555566666666666666666665555566666666666666


Q ss_pred             CCCCc-ccCC-CCC-CCCCCEEECCCCc
Q psy11652        265 GNKLT-RIPD-FIH-NKRLSHLNLGYNF  289 (325)
Q Consensus       265 ~n~l~-~l~~-~~~-~~~L~~L~l~~n~  289 (325)
                      +|.++ .+|. +.. ..++..+++.+|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCc
Confidence            66665 5554 322 2344555666554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.56  E-value=5e-09  Score=85.34  Aligned_cols=184  Identities=21%  Similarity=0.194  Sum_probs=98.0

Q ss_pred             hhhccCCCCCEEEccCCcce-eec------CCCCCCccEEEccCCccccc-h-------------hhccCCCCccEEEcc
Q psy11652        111 LELNRMTSLKWIVLSNNYIK-EFV------IPNRKHIEKLDLSNNLISTI-N-------------LNLNNTYYIKDLILS  169 (325)
Q Consensus       111 ~~~~~~~~L~~L~l~~~~~~-~~~------~~~~~~L~~L~l~~~~~~~~-~-------------~~~~~~~~L~~L~l~  169 (325)
                      .++.+||.|+.++++.|.|. .+|      +.....|.+|.+++|++..+ .             .-..+-|.|+.+++.
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            44555566666666666554 222      23444555555555554433 0             113445678888888


Q ss_pred             CCcCcccccC----ccCC-ccccEEEcccCCCccc--Chhhh---hCccccCCEEEccCCCCcC-----chHhhhCCCCC
Q psy11652        170 YNQISKLNAN----TFRN-LNVFRLYLKFNKISEI--HDFAF---NGLNSTLEFLDLENNRLTN-----INQCFRNLKKL  234 (325)
Q Consensus       170 ~~~l~~~~~~----~~~~-~~L~~L~l~~~~l~~~--~~~~~---~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L  234 (325)
                      .|++...+..    .+.. ..++.+.+..|.|...  ..-.+   ..+. +|+.|++.+|.++.     +...+..++.|
T Consensus       166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~-~LevLDlqDNtft~~gS~~La~al~~W~~l  244 (388)
T COG5238         166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSH-SLEVLDLQDNTFTLEGSRYLADALCEWNLL  244 (388)
T ss_pred             cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhC-cceeeeccccchhhhhHHHHHHHhcccchh
Confidence            8777644322    1122 4677777777766532  11111   1233 67777777776652     22255566667


Q ss_pred             CEEeCCCCcccccccc-hhc-----cCccCCEEEccCCCCc-------ccCC--CCCCCCCCEEECCCCcCccccc
Q psy11652        235 KYLYLHNNNIEFIQNN-TFE-----HLVNLKSISLSGNKLT-------RIPD--FIHNKRLSHLNLGYNFLNELIL  295 (325)
Q Consensus       235 ~~L~l~~~~l~~~~~~-~l~-----~~~~L~~L~l~~n~l~-------~l~~--~~~~~~L~~L~l~~n~i~~~~~  295 (325)
                      +.|++..|-++.-... .+.     ..++|..|...+|.+.       .++.  -..+|-|..+.+.||+|+...+
T Consensus       245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~d  320 (388)
T COG5238         245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELAD  320 (388)
T ss_pred             hhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHHH
Confidence            7777777755421110 111     1356667776666543       1222  3445566666677777765443

>KOG2982|consensus

Probab=98.55  E-value=2.1e-08  Score=82.77  Aligned_cols=77  Identities=21%  Similarity=0.207  Sum_probs=38.3

Q ss_pred             ccCccEEECCCCcccccc----cccCCCCccEEEccCCCCccc-ccc---cCCccEEEeecCcccch---hhhccCCCCC
Q psy11652         52 QNKLTTLFIGENHIHQIE----NLNGFRSILWLNMDSNLLQTL-DSL---PKTMETLSVANNYLVNY---LELNRMTSLK  120 (325)
Q Consensus        52 ~~~L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~-~~l---~~~L~~L~l~~~~l~~~---~~~~~~~~L~  120 (325)
                      +.+++.++|.+|.++++.    .+.++|.|++|+++.|.+... ..+   ..+|+.|-+.+..+.-.   ..+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            355555555555555544    344555555555555555444 222   45555555555433211   3444445555


Q ss_pred             EEEccCCc
Q psy11652        121 WIVLSNNY  128 (325)
Q Consensus       121 ~L~l~~~~  128 (325)
                      +|.++.|.
T Consensus       150 elHmS~N~  157 (418)
T KOG2982|consen  150 ELHMSDNS  157 (418)
T ss_pred             hhhhccch
Confidence            55555543

>KOG2120|consensus

Probab=98.50  E-value=5.1e-09  Score=86.40  Aligned_cols=75  Identities=16%  Similarity=0.162  Sum_probs=37.6

Q ss_pred             ccEEECCCCcccccc---cccCCCCccEEEccCCCCccc--ccc--cCCccEEEeecC-cccch---hhhccCCCCCEEE
Q psy11652         55 LTTLFIGENHIHQIE---NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLSVANN-YLVNY---LELNRMTSLKWIV  123 (325)
Q Consensus        55 L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l~~~-~l~~~---~~~~~~~~L~~L~  123 (325)
                      |++|+|++..++.-.   .+..|.+|+.|.+.++++.+.  ..+  -.+|+.|+++.+ .++..   ..+..++.|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            555555555544322   345555555555555555443  222  455555555554 23222   3445555555555


Q ss_pred             ccCCcc
Q psy11652        124 LSNNYI  129 (325)
Q Consensus       124 l~~~~~  129 (325)
                      +++|..
T Consensus       267 lsWc~l  272 (419)
T KOG2120|consen  267 LSWCFL  272 (419)
T ss_pred             chHhhc
Confidence            555544

>PLN03150 hypothetical protein; Provisional

Probab=98.46  E-value=3.9e-07  Score=86.52  Aligned_cols=103  Identities=23%  Similarity=0.202  Sum_probs=83.7

Q ss_pred             CCEEEccCCCCc-CchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCc-ccCC-CCCCCCCCEEECCC
Q psy11652        211 LEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT-RIPD-FIHNKRLSHLNLGY  287 (325)
Q Consensus       211 L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~l~~-~~~~~~L~~L~l~~  287 (325)
                      ++.|+++++.+. .+|..+..+++|+.|++++|.+.+..+..++.+++|+.|++++|.++ .+|. +..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            778999999887 77888999999999999999999877778899999999999999998 6777 99999999999999


Q ss_pred             CcCcccccccccc-hhhhccccccccc
Q psy11652        288 NFLNELILESSIV-ENEIIDQNMLFNS  313 (325)
Q Consensus       288 n~i~~~~~~~~~~-~~~~~~~~~~~~~  313 (325)
                      |.+++..+..... ......+++..|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            9998655543221 1223344555544

>KOG1644|consensus

Probab=98.44  E-value=4.1e-07  Score=71.14  Aligned_cols=120  Identities=15%  Similarity=0.223  Sum_probs=88.5

Q ss_pred             cceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCccc-ccc---cCCccEEEeec
Q psy11652         29 LMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTL-DSL---PKTMETLSVAN  104 (325)
Q Consensus        29 L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~l---~~~L~~L~l~~  104 (325)
                      =+++++.+..+..+..  . +....+...++|++|.+..++.|..++.|.+|.+.+|+++.+ +.+   +++|+.|.+.+
T Consensus        21 e~e~~LR~lkip~ien--l-g~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIEN--L-GATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             ccccccccccccchhh--c-cccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            3455566555554444  2 334478888999999888888888899999999999999888 444   88899999999


Q ss_pred             Ccccch---hhhccCCCCCEEEccCCcceeec------CCCCCCccEEEccCCccc
Q psy11652        105 NYLVNY---LELNRMTSLKWIVLSNNYIKEFV------IPNRKHIEKLDLSNNLIS  151 (325)
Q Consensus       105 ~~l~~~---~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~L~~L~l~~~~~~  151 (325)
                      |.+..+   ..+..+|.|++|.+-+|.++.-+      ...+++|+.||+.+-...
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence            877666   67778888888888888777433      346777777777655443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.44  E-value=3.5e-07  Score=74.82  Aligned_cols=201  Identities=13%  Similarity=0.159  Sum_probs=141.4

Q ss_pred             cCCccEEEeecCcccch------hhhccCCCCCEEEccCCcce----ee--------c-CCCCCCccEEEccCCccccc-
Q psy11652         94 PKTMETLSVANNYLVNY------LELNRMTSLKWIVLSNNYIK----EF--------V-IPNRKHIEKLDLSNNLISTI-  153 (325)
Q Consensus        94 ~~~L~~L~l~~~~l~~~------~~~~~~~~L~~L~l~~~~~~----~~--------~-~~~~~~L~~L~l~~~~~~~~-  153 (325)
                      +..+..+++++|.+..-      ..+.+..+|+..+++.-...    .+        + ...+++++.+++++|.+... 
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            66777777777766543      45556677777777653222    11        1 45889999999999998654 


Q ss_pred             ----hhhccCCCCccEEEccCCcCccccc--------------CccCCccccEEEcccCCCcccCh----hhhhCccccC
Q psy11652        154 ----NLNLNNTYYIKDLILSYNQISKLNA--------------NTFRNLNVFRLYLKFNKISEIHD----FAFNGLNSTL  211 (325)
Q Consensus       154 ----~~~~~~~~~L~~L~l~~~~l~~~~~--------------~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~~L  211 (325)
                          ...+++...|++|.+.+|.+..+..              .+...+.|++++...|++..-+.    ..+.... ++
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~-~l  187 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE-NL  187 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc-Cc
Confidence                3457888999999999998874332              12233789999999998875433    2333444 89


Q ss_pred             CEEEccCCCCc--CchH----hhhCCCCCCEEeCCCCcccc----cccchhccCccCCEEEccCCCCcc--cCC------
Q psy11652        212 EFLDLENNRLT--NINQ----CFRNLKKLKYLYLHNNNIEF----IQNNTFEHLVNLKSISLSGNKLTR--IPD------  273 (325)
Q Consensus       212 ~~L~l~~~~l~--~~~~----~~~~~~~L~~L~l~~~~l~~----~~~~~l~~~~~L~~L~l~~n~l~~--l~~------  273 (325)
                      +++.+..|+|.  .+..    .+..+.+|..|+++.|-++.    .....++.|+.|+.|.+..|.++.  ...      
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~  267 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN  267 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence            99999999987  2222    45677899999999998874    333456678889999999998872  111      


Q ss_pred             CCCCCCCCEEECCCCcCccccc
Q psy11652        274 FIHNKRLSHLNLGYNFLNELIL  295 (325)
Q Consensus       274 ~~~~~~L~~L~l~~n~i~~~~~  295 (325)
                      --..|+|..|...+|.+..-..
T Consensus       268 e~~~p~l~~L~~~Yne~~~~~i  289 (388)
T COG5238         268 EKFVPNLMPLPGDYNERRGGII  289 (388)
T ss_pred             hhcCCCccccccchhhhcCcee
Confidence            2344789999999997765433

>KOG4579|consensus

Probab=98.41  E-value=9.4e-09  Score=75.21  Aligned_cols=109  Identities=17%  Similarity=0.149  Sum_probs=72.7

Q ss_pred             ccEEEccCCcCccccc---CccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeC
Q psy11652        163 IKDLILSYNQISKLNA---NTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYL  239 (325)
Q Consensus       163 L~~L~l~~~~l~~~~~---~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l  239 (325)
                      +..++++.|.+..++.   .......|..+++++|.+...++..-..+| .++.+++.+|.+.++|..+..++.|+.+++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~-t~t~lNl~~neisdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFP-TATTLNLANNEISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccc-hhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence            3445555665553332   222336666777777777776655444455 778888888888888877778888888888


Q ss_pred             CCCcccccccchhccCccCCEEEccCCCCcccCC
Q psy11652        240 HNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD  273 (325)
Q Consensus       240 ~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~  273 (325)
                      +.|.+...+...+. +.++-.|+..+|.+..+|.
T Consensus       108 ~~N~l~~~p~vi~~-L~~l~~Lds~~na~~eid~  140 (177)
T KOG4579|consen  108 RFNPLNAEPRVIAP-LIKLDMLDSPENARAEIDV  140 (177)
T ss_pred             ccCccccchHHHHH-HHhHHHhcCCCCccccCcH
Confidence            88877776664444 6777777777777776664

>KOG3665|consensus

Probab=98.40  E-value=1.4e-07  Score=89.61  Aligned_cols=144  Identities=15%  Similarity=0.144  Sum_probs=102.0

Q ss_pred             cccccceEEcCCCcee--eecCCCcCcccccCccEEECCCCcccccc---cccCCCCccEEEccCCCCcccccc--cCCc
Q psy11652         25 SCILLMSAENEDNQIA--ELETANWSPEIQNKLTTLFIGENHIHQIE---NLNGFRSILWLNMDSNLLQTLDSL--PKTM   97 (325)
Q Consensus        25 ~~~~L~~L~l~~~~i~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~l--~~~L   97 (325)
                      .-.+|++|++++...-  ..+. .+ +.++|.|+.|.+.+-.+....   .+.++|+|..||++++++..+.++  +++|
T Consensus       120 sr~nL~~LdI~G~~~~s~~W~~-ki-g~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknL  197 (699)
T KOG3665|consen  120 SRQNLQHLDISGSELFSNGWPK-KI-GTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNL  197 (699)
T ss_pred             HHHhhhhcCccccchhhccHHH-HH-hhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccH
Confidence            3448889999875333  3333 55 556699999999887666543   567889999999999988888666  8889


Q ss_pred             cEEEeecCcccch---hhhccCCCCCEEEccCCcceeec---------CCCCCCccEEEccCCccccc--hhhccCCCCc
Q psy11652         98 ETLSVANNYLVNY---LELNRMTSLKWIVLSNNYIKEFV---------IPNRKHIEKLDLSNNLISTI--NLNLNNTYYI  163 (325)
Q Consensus        98 ~~L~l~~~~l~~~---~~~~~~~~L~~L~l~~~~~~~~~---------~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L  163 (325)
                      +.|.+.+-.+...   ..+..+++|+.||+|.......+         ...+++|+.||++++.+...  ...+...++|
T Consensus       198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L  277 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL  277 (699)
T ss_pred             HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence            9888888766654   67778899999999876543211         23588999999998887654  3334455666


Q ss_pred             cEEEccC
Q psy11652        164 KDLILSY  170 (325)
Q Consensus       164 ~~L~l~~  170 (325)
                      +.+...+
T Consensus       278 ~~i~~~~  284 (699)
T KOG3665|consen  278 QQIAALD  284 (699)
T ss_pred             hhhhhhh
Confidence            6655443

>KOG2120|consensus

Probab=98.34  E-value=3.4e-08  Score=81.64  Aligned_cols=169  Identities=17%  Similarity=0.108  Sum_probs=84.3

Q ss_pred             CCEEEccCCccee--ec--CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCC-cCcccc--cCccCCccccEEE
Q psy11652        119 LKWIVLSNNYIKE--FV--IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYN-QISKLN--ANTFRNLNVFRLY  190 (325)
Q Consensus       119 L~~L~l~~~~~~~--~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~-~l~~~~--~~~~~~~~L~~L~  190 (325)
                      |+.++++...++.  +.  ...+.+|+.|.+.++.+..- ...++...+|+.++++++ .++...  ..+.+++.|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            5556665555541  11  23455566666666555543 445555566666666554 333211  1122235666666


Q ss_pred             cccCCCcccCh-hhhhCccccCCEEEccCCCC----cCchHhhhCCCCCCEEeCCCCc-ccccccchhccCccCCEEEcc
Q psy11652        191 LKFNKISEIHD-FAFNGLNSTLEFLDLENNRL----TNINQCFRNLKKLKYLYLHNNN-IEFIQNNTFEHLVNLKSISLS  264 (325)
Q Consensus       191 l~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~l----~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~  264 (325)
                      +++|.+..... -.......+++.|+++|+.-    ..+......|+++..|+++.+. ++.-....+-.++.|++|.++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence            66665432111 12223333566666665421    1333344566677777766652 332222234455666777766


Q ss_pred             CCCCc---ccCCCCCCCCCCEEECCC
Q psy11652        265 GNKLT---RIPDFIHNKRLSHLNLGY  287 (325)
Q Consensus       265 ~n~l~---~l~~~~~~~~L~~L~l~~  287 (325)
                      .|..-   .+-.+...|+|..|++.|
T Consensus       347 RCY~i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  347 RCYDIIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             hhcCCChHHeeeeccCcceEEEEecc
Confidence            66433   111255566677777665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.32  E-value=6e-07  Score=53.11  Aligned_cols=40  Identities=30%  Similarity=0.462  Sum_probs=28.7

Q ss_pred             ccCCEEEccCCCCcccCC-CCCCCCCCEEECCCCcCccccc
Q psy11652        256 VNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELIL  295 (325)
Q Consensus       256 ~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~  295 (325)
                      ++|++|++++|+++++|+ +..+++|+.|++++|+|+++++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            357777888888777777 7778888888888887776654

...

>KOG4341|consensus

Probab=98.24  E-value=3.5e-08  Score=85.02  Aligned_cols=236  Identities=18%  Similarity=0.074  Sum_probs=126.2

Q ss_pred             cCccEEECCCCccc-ccc---cccCCCCccEEEccCCC-Cccc--ccc---cCCccEEEeecC-cccch---hhhccCCC
Q psy11652         53 NKLTTLFIGENHIH-QIE---NLNGFRSILWLNMDSNL-LQTL--DSL---PKTMETLSVANN-YLVNY---LELNRMTS  118 (325)
Q Consensus        53 ~~L~~L~l~~~~~~-~~~---~~~~~~~L~~L~l~~~~-~~~~--~~l---~~~L~~L~l~~~-~l~~~---~~~~~~~~  118 (325)
                      -.|+.|+++++.=. .-+   .-.+|++++.|.+.+|. +++.  .++   +++|+++++..| .++..   .....+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            36788888887432 222   34568888888888775 2222  222   788888888775 33333   35567788


Q ss_pred             CCEEEccCCcce---eec--CCCCCCccEEEccCCccccc-----------------------------hhhccCCCCcc
Q psy11652        119 LKWIVLSNNYIK---EFV--IPNRKHIEKLDLSNNLISTI-----------------------------NLNLNNTYYIK  164 (325)
Q Consensus       119 L~~L~l~~~~~~---~~~--~~~~~~L~~L~l~~~~~~~~-----------------------------~~~~~~~~~L~  164 (325)
                      |++++++++.-.   .+.  ..+...++.+...+|.-.+.                             -..-.++..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            888888877432   222  23344444444444322111                             11112344555


Q ss_pred             EEEccCCc-Cccccc-CccC-CccccEEEcccCC-CcccChhhhhCccccCCEEEccCCCCc---CchHhhhCCCCCCEE
Q psy11652        165 DLILSYNQ-ISKLNA-NTFR-NLNVFRLYLKFNK-ISEIHDFAFNGLNSTLEFLDLENNRLT---NINQCFRNLKKLKYL  237 (325)
Q Consensus       165 ~L~l~~~~-l~~~~~-~~~~-~~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~~~l~---~~~~~~~~~~~L~~L  237 (325)
                      .+..+++. +++..- .+.. ..+|+.+-+.++. ++...-..++...+.|+.+++.++...   .+...-.+|+.|+.+
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l  377 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL  377 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence            55555442 222111 1112 2666777776663 444333344433336777777766543   233344567777777


Q ss_pred             eCCCCcc-cccc----cchhccCccCCEEEccCCCCc--ccCC-CCCCCCCCEEECCCC
Q psy11652        238 YLHNNNI-EFIQ----NNTFEHLVNLKSISLSGNKLT--RIPD-FIHNKRLSHLNLGYN  288 (325)
Q Consensus       238 ~l~~~~l-~~~~----~~~l~~~~~L~~L~l~~n~l~--~l~~-~~~~~~L~~L~l~~n  288 (325)
                      .++++.. +...    ...-.++..++.+.++++...  ..-. ...|++|+.+++-++
T Consensus       378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            7776642 2221    112233467777777777665  1112 667777777776554

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.20  E-value=8.2e-06  Score=72.00  Aligned_cols=132  Identities=13%  Similarity=0.129  Sum_probs=89.0

Q ss_pred             cccccceEEcCCCceeeecCCCcCcccccCccEEECCCC-cccccc-cccCCCCccEEEccCC-CCcccccccCCccEEE
Q psy11652         25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGEN-HIHQIE-NLNGFRSILWLNMDSN-LLQTLDSLPKTMETLS  101 (325)
Q Consensus        25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~-~~~~~~~L~~L~l~~~-~~~~~~~l~~~L~~L~  101 (325)
                      .|.+++.|++++|.++.+|.  +    ++.|+.|.+++| .++.+| .+  .++|++|++++| .+   ..++++|+.|+
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~--L----P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L---~sLP~sLe~L~  118 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV--L----PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEI---SGLPESVRSLE  118 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC--C----CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccc---cccccccceEE
Confidence            57899999999999998884  4    568999999886 566666 33  358999999987 33   34588899999


Q ss_pred             eecCcccchhhhccC-CCCCEEEccCCcce---eecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCc
Q psy11652        102 VANNYLVNYLELNRM-TSLKWIVLSNNYIK---EFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQ  172 (325)
Q Consensus       102 l~~~~l~~~~~~~~~-~~L~~L~l~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  172 (325)
                      +.++....+   ..+ ++|+.|.+.++...   .++..-+++|++|.+++|.....|..+  ..+|+.|.+..+.
T Consensus       119 L~~n~~~~L---~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~L--P~SLk~L~ls~n~  188 (426)
T PRK15386        119 IKGSATDSI---KNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKL--PESLQSITLHIEQ  188 (426)
T ss_pred             eCCCCCccc---ccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcccc--cccCcEEEecccc
Confidence            876544332   333 35777776443211   122223468888888887765544333  2578888887653

>KOG1644|consensus

Probab=98.20  E-value=2.4e-06  Score=66.97  Aligned_cols=101  Identities=18%  Similarity=0.160  Sum_probs=50.4

Q ss_pred             cCCccEEEeecCcccchhhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc--hhhccCCCCccEEEc
Q psy11652         94 PKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI--NLNLNNTYYIKDLIL  168 (325)
Q Consensus        94 ~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l  168 (325)
                      ......+++++|.+.....+.+++.|++|.+++|.++.+.   ...+++|+.|.+.+|.+..+  -..+..++.|++|.+
T Consensus        41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            4444555555555555555555555555555555555444   22345555555555555444  233455556666666


Q ss_pred             cCCcCccccc----CccCCccccEEEcccC
Q psy11652        169 SYNQISKLNA----NTFRNLNVFRLYLKFN  194 (325)
Q Consensus       169 ~~~~l~~~~~----~~~~~~~L~~L~l~~~  194 (325)
                      -+|.+++...    .+...++|+.||+.+-
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhhh
Confidence            5555543221    1122255555555543

>KOG4579|consensus

Probab=98.18  E-value=2.2e-07  Score=68.12  Aligned_cols=115  Identities=20%  Similarity=0.205  Sum_probs=86.0

Q ss_pred             ccccEEEcccCCCcccCh--hhhhCccccCCEEEccCCCCcCchHhhh-CCCCCCEEeCCCCcccccccchhccCccCCE
Q psy11652        184 LNVFRLYLKFNKISEIHD--FAFNGLNSTLEFLDLENNRLTNINQCFR-NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKS  260 (325)
Q Consensus       184 ~~L~~L~l~~~~l~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~  260 (325)
                      ..+..+++++|.+..+..  ..+.+.. .|+..++++|.+..+|..|. .++.+..+++.+|.++.+|.. +..++.|+.
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~-el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~  104 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGY-ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRS  104 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCc-eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhh
Confidence            345567777776654321  2233333 67778899999888888664 456888999999999888775 888899999


Q ss_pred             EEccCCCCcccCC-CCCCCCCCEEECCCCcCcccccccccc
Q psy11652        261 ISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELILESSIV  300 (325)
Q Consensus       261 L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~  300 (325)
                      ++++.|.+...|. +..+.++..|+..+|.+..++....+.
T Consensus       105 lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s  145 (177)
T KOG4579|consen  105 LNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYS  145 (177)
T ss_pred             cccccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhcc
Confidence            9999999998887 666888888888889888888764433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.99  E-value=7e-05  Score=66.28  Aligned_cols=135  Identities=16%  Similarity=0.156  Sum_probs=68.4

Q ss_pred             hccCCCCCEEEccCCcceeecCCCCCCccEEEccCCc-cccchhhccCCCCccEEEccCC-cCcccccCccCCccccEEE
Q psy11652        113 LNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNL-ISTINLNLNNTYYIKDLILSYN-QISKLNANTFRNLNVFRLY  190 (325)
Q Consensus       113 ~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~L~~L~  190 (325)
                      +..+++++.|++++|.++.+| .-..+|+.|.+++|. ++.+|..+  ..+|+.|.+.+| .+..+|      ..|+.|+
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L~  118 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLP-VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRSLE  118 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccceEE
Confidence            334466666666666666666 223456666665533 33334333  245677777666 333322      3456666


Q ss_pred             cccCCCcccChhhhhCccccCCEEEccCCC-Cc--CchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCC
Q psy11652        191 LKFNKISEIHDFAFNGLNSTLEFLDLENNR-LT--NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN  266 (325)
Q Consensus       191 l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-l~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n  266 (325)
                      +.++....     +..+|++|+.|.+.++. ..  .++.  .-.++|++|.+.+|.....+. .+.  .+|+.|+++.+
T Consensus       119 L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~-~LP--~SLk~L~ls~n  187 (426)
T PRK15386        119 IKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPE-KLP--ESLQSITLHIE  187 (426)
T ss_pred             eCCCCCcc-----cccCcchHhheecccccccccccccc--ccCCcccEEEecCCCcccCcc-ccc--ccCcEEEeccc
Confidence            65444322     23455566666664322 11  1111  112467777777665443322 222  46777777655

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.97  E-value=1.4e-05  Score=47.18  Aligned_cols=38  Identities=45%  Similarity=0.547  Sum_probs=18.8

Q ss_pred             cCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCccccc
Q psy11652        210 TLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFI  247 (325)
Q Consensus       210 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~  247 (325)
                      +|++|++++|.++.+|..++.+++|+.|++++|.++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            45555555555555554455555555555555554443

...

>KOG4341|consensus

Probab=97.97  E-value=2.5e-07  Score=79.87  Aligned_cols=262  Identities=16%  Similarity=0.045  Sum_probs=156.9

Q ss_pred             hhcccccceEEcCCC-ceeeecCCCcCcccccCccEEECCCC-cccccc---cccCCCCccEEEccCCC-Cccc--ccc-
Q psy11652         23 QISCILLMSAENEDN-QIAELETANWSPEIQNKLTTLFIGEN-HIHQIE---NLNGFRSILWLNMDSNL-LQTL--DSL-   93 (325)
Q Consensus        23 ~~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~---~~~~~~~L~~L~l~~~~-~~~~--~~l-   93 (325)
                      ...|++++.|.+-++ .|++.....+ .+.+++|++|++..| .+++..   ....|++|++|++++|. +.+-  ..+ 
T Consensus       160 ~~~CpnIehL~l~gc~~iTd~s~~sl-a~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~  238 (483)
T KOG4341|consen  160 ASNCPNIEHLALYGCKKITDSSLLSL-ARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ  238 (483)
T ss_pred             hhhCCchhhhhhhcceeccHHHHHHH-HHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence            447778888777664 3444433345 566678888888775 455443   34568888888888774 3321  233 


Q ss_pred             --cCCccEEEeecCcccch----hhhccCCCCCEEEccCCc-ceeec----CCCCCCccEEEccCCccccc---hhhccC
Q psy11652         94 --PKTMETLSVANNYLVNY----LELNRMTSLKWIVLSNNY-IKEFV----IPNRKHIEKLDLSNNLISTI---NLNLNN  159 (325)
Q Consensus        94 --~~~L~~L~l~~~~l~~~----~~~~~~~~L~~L~l~~~~-~~~~~----~~~~~~L~~L~l~~~~~~~~---~~~~~~  159 (325)
                        ...++.+.+.+|.-...    ..-..+..+..+++..|. ++...    ...+.+|+.+..+++.-.+.   ..--.+
T Consensus       239 rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~  318 (483)
T KOG4341|consen  239 RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH  318 (483)
T ss_pred             ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC
Confidence              45566666665533322    333444556666665553 33222    34677889998877764322   222456


Q ss_pred             CCCccEEEccCCc-Cccc--ccCccCCccccEEEcccCCCcccC-hhhhh-CccccCCEEEccCCCC-cCc-----hHhh
Q psy11652        160 TYYIKDLILSYNQ-ISKL--NANTFRNLNVFRLYLKFNKISEIH-DFAFN-GLNSTLEFLDLENNRL-TNI-----NQCF  228 (325)
Q Consensus       160 ~~~L~~L~l~~~~-l~~~--~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~-~~~~~L~~L~l~~~~l-~~~-----~~~~  228 (325)
                      +++|+.+.+.+|+ ++..  .....+...|+.+++.++...... -..++ .++ .++.+.++++.. ++-     ...-
T Consensus       319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~-~lr~lslshce~itD~gi~~l~~~~  397 (483)
T KOG4341|consen  319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP-RLRVLSLSHCELITDEGIRHLSSSS  397 (483)
T ss_pred             CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc-hhccCChhhhhhhhhhhhhhhhhcc
Confidence            7899999999885 3332  222223488999999888654322 12222 445 899999987743 222     1122


Q ss_pred             hCCCCCCEEeCCCCccc-ccccchhccCccCCEEEccCCCCc---ccCC-CCCCCCCCEEECC
Q psy11652        229 RNLKKLKYLYLHNNNIE-FIQNNTFEHLVNLKSISLSGNKLT---RIPD-FIHNKRLSHLNLG  286 (325)
Q Consensus       229 ~~~~~L~~L~l~~~~l~-~~~~~~l~~~~~L~~L~l~~n~l~---~l~~-~~~~~~L~~L~l~  286 (325)
                      .....+..+-++++... +.....+..++.|+.+++.+++-.   .+.+ ..++|++++..+.
T Consensus       398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~  460 (483)
T KOG4341|consen  398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF  460 (483)
T ss_pred             ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence            34566888888888544 444456677889999988876532   3333 5667777665443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.94  E-value=3.3e-05  Score=57.79  Aligned_cols=16  Identities=13%  Similarity=0.139  Sum_probs=5.7

Q ss_pred             hhccCCCCccEEEccC
Q psy11652        155 LNLNNTYYIKDLILSY  170 (325)
Q Consensus       155 ~~~~~~~~L~~L~l~~  170 (325)
                      ..|.++.+|+.+.+..
T Consensus        29 ~~F~~~~~l~~i~~~~   44 (129)
T PF13306_consen   29 NAFSNCTSLKSINFPN   44 (129)
T ss_dssp             TTTTT-TT-SEEEESS
T ss_pred             hhcccccccccccccc
Confidence            3344444444444433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.84  E-value=0.00012  Score=54.73  Aligned_cols=119  Identities=27%  Similarity=0.442  Sum_probs=56.7

Q ss_pred             hhccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCC
Q psy11652        155 LNLNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLK  232 (325)
Q Consensus       155 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~  232 (325)
                      ..|.++.+|+.+.+.. .+..+....+.. ++++.+.+..+ +..+....|..++ +++.+.+.. .+..++. .|..++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~-~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK-SLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T-T-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccc-ccccccccc-cccccccccccccc
Confidence            4566666777777664 455666666655 47777777663 6666666666666 677777754 3443443 455677


Q ss_pred             CCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCC
Q psy11652        233 KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRL  280 (325)
Q Consensus       233 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L  280 (325)
                      +++.+.+..+ +..+....+.++ .++.+.+.. .+..++.  |.++++|
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            7777777654 555555566665 677776654 4445554  6665555

>KOG3665|consensus

Probab=97.73  E-value=1.8e-05  Score=75.40  Aligned_cols=108  Identities=14%  Similarity=0.114  Sum_probs=85.1

Q ss_pred             hhhcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCccc----ccc-cCC
Q psy11652         22 VQISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTL----DSL-PKT   96 (325)
Q Consensus        22 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~l-~~~   96 (325)
                      .+.-+|.|++|.+++..+..-.-.++ +.-+|+|..||+++++++.+..++.+++|+.|.+.+-.+...    +-| +++
T Consensus       143 ig~~LPsL~sL~i~~~~~~~~dF~~l-c~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~  221 (699)
T KOG3665|consen  143 IGTMLPSLRSLVISGRQFDNDDFSQL-CASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKK  221 (699)
T ss_pred             HhhhCcccceEEecCceecchhHHHH-hhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccC
Confidence            46789999999999987774443334 444599999999999999888888999999999988777654    334 999


Q ss_pred             ccEEEeecCcccch--------hhhccCCCCCEEEccCCcce
Q psy11652         97 METLSVANNYLVNY--------LELNRMTSLKWIVLSNNYIK  130 (325)
Q Consensus        97 L~~L~l~~~~l~~~--------~~~~~~~~L~~L~l~~~~~~  130 (325)
                      |+.||++.......        ..-..+|.|+.|+.+++.+.
T Consensus       222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             CCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            99999987533222        44556899999999988766

>KOG2123|consensus

Probab=97.58  E-value=3.2e-06  Score=69.55  Aligned_cols=77  Identities=18%  Similarity=0.175  Sum_probs=50.4

Q ss_pred             cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc-----cCCccE
Q psy11652         25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL-----PKTMET   99 (325)
Q Consensus        25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l-----~~~L~~   99 (325)
                      ++.+++.|++.++.++++..    ++-++.|+.|.|+=|+|+++..+..|.+|++|+|..|.+.+++++     +++|+.
T Consensus        17 dl~~vkKLNcwg~~L~DIsi----c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDISI----CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHHhhhhcccCCCccHHHH----HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            34466677777777776665    443477777777777777666666777777777777766666333     566666


Q ss_pred             EEeecC
Q psy11652        100 LSVANN  105 (325)
Q Consensus       100 L~l~~~  105 (325)
                      |.|..|
T Consensus        93 LWL~EN   98 (388)
T KOG2123|consen   93 LWLDEN   98 (388)
T ss_pred             HhhccC
Confidence            666554

>KOG2123|consensus

Probab=97.57  E-value=2.7e-06  Score=69.95  Aligned_cols=92  Identities=17%  Similarity=0.164  Sum_probs=75.3

Q ss_pred             cCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEEeecCcccch---hhhccCCCCCEEEccCC
Q psy11652         53 NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNY---LELNRMTSLKWIVLSNN  127 (325)
Q Consensus        53 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l~~~~l~~~---~~~~~~~~L~~L~l~~~  127 (325)
                      .+.++|++.+|.+.++.....++.|+.|.|+-|++..+..|  +.+|++|+|..|.+..+   ..+.++|+|+.|.|..|
T Consensus        19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN   98 (388)
T ss_pred             HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence            57788999999999887777899999999999999888777  99999999999988888   78889999999999877


Q ss_pred             ccee-ec-------CCCCCCccEEE
Q psy11652        128 YIKE-FV-------IPNRKHIEKLD  144 (325)
Q Consensus       128 ~~~~-~~-------~~~~~~L~~L~  144 (325)
                      .-.. .+       ...+++|++||
T Consensus        99 PCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   99 PCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             CcccccchhHHHHHHHHcccchhcc
Confidence            5431 11       33677777775

>KOG2739|consensus

Probab=97.40  E-value=9.3e-05  Score=60.56  Aligned_cols=95  Identities=16%  Similarity=0.193  Sum_probs=54.2

Q ss_pred             cCccEEECCCCcccccccccCCCCccEEEccCCCCccc---ccc---cCCccEEEeecCcccch---hhhccCCCCCEEE
Q psy11652         53 NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTL---DSL---PKTMETLSVANNYLVNY---LELNRMTSLKWIV  123 (325)
Q Consensus        53 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~l---~~~L~~L~l~~~~l~~~---~~~~~~~~L~~L~  123 (325)
                      ..|+.|++.++.++++..|..+++||.|.++.|.....   ..+   +++|+++++++|.+..+   ..+..+.+|..|+
T Consensus        43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld  122 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD  122 (260)
T ss_pred             cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence            45566666666555555555666666666666633322   111   56666777666655544   5555666666666


Q ss_pred             ccCCcceeec------CCCCCCccEEEccC
Q psy11652        124 LSNNYIKEFV------IPNRKHIEKLDLSN  147 (325)
Q Consensus       124 l~~~~~~~~~------~~~~~~L~~L~l~~  147 (325)
                      +..|..+...      +..+++|++|+-..
T Consensus       123 l~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  123 LFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             cccCCccccccHHHHHHHHhhhhccccccc
Confidence            6666555322      33556666665433

>KOG2739|consensus

Probab=97.31  E-value=9.6e-05  Score=60.47  Aligned_cols=79  Identities=24%  Similarity=0.327  Sum_probs=37.4

Q ss_pred             CCCccEEEccCCCCcccccc--cCCccEEEeecCcccch----hhhccCCCCCEEEccCCcceeec----CCCCCCccEE
Q psy11652         74 FRSILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNY----LELNRMTSLKWIVLSNNYIKEFV----IPNRKHIEKL  143 (325)
Q Consensus        74 ~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l~~~~l~~~----~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~L~~L  143 (325)
                      +..|+.+++.+..++.+..|  +++|+.|.++.|.....    .....+|+|+++++++|++..+.    ...+.+|..|
T Consensus        42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL  121 (260)
T ss_pred             ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence            34445555555555544333  55555555555522211    23333355555555555554222    3344455555


Q ss_pred             EccCCcccc
Q psy11652        144 DLSNNLIST  152 (325)
Q Consensus       144 ~l~~~~~~~  152 (325)
                      ++.+|..+.
T Consensus       122 dl~n~~~~~  130 (260)
T KOG2739|consen  122 DLFNCSVTN  130 (260)
T ss_pred             hcccCCccc
Confidence            555554433

>KOG1947|consensus

Probab=96.44  E-value=0.00085  Score=62.03  Aligned_cols=31  Identities=23%  Similarity=0.277  Sum_probs=14.5

Q ss_pred             CCEEEccCCCCcccCC---CCC-CCCCCEEECCCC
Q psy11652        258 LKSISLSGNKLTRIPD---FIH-NKRLSHLNLGYN  288 (325)
Q Consensus       258 L~~L~l~~n~l~~l~~---~~~-~~~L~~L~l~~n  288 (325)
                      ++.|++..+.......   ... +..+..+++.++
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~  437 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGC  437 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCc
Confidence            5666666555432222   111 445555555554

>KOG1947|consensus

Probab=96.19  E-value=0.00096  Score=61.67  Aligned_cols=116  Identities=21%  Similarity=0.188  Sum_probs=57.4

Q ss_pred             cCccEEECCCC-cccc--cc-cccCCCCccEEEccCC-CCccc-----ccc---cCCccEEEeecCc-ccch--hh-hcc
Q psy11652         53 NKLTTLFIGEN-HIHQ--IE-NLNGFRSILWLNMDSN-LLQTL-----DSL---PKTMETLSVANNY-LVNY--LE-LNR  115 (325)
Q Consensus        53 ~~L~~L~l~~~-~~~~--~~-~~~~~~~L~~L~l~~~-~~~~~-----~~l---~~~L~~L~l~~~~-l~~~--~~-~~~  115 (325)
                      +.|+.|.+.++ .+..  +. ....++.|+.|+++++ .....     ..+   +++|+.++++++. ++..  .. ...
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~  267 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR  267 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence            56666666655 3333  21 4455666666666652 11111     011   5666666666665 3333  22 223


Q ss_pred             CCCCCEEEccCCc-ceeec----CCCCCCccEEEccCCcccc---chhhccCCCCccEEEc
Q psy11652        116 MTSLKWIVLSNNY-IKEFV----IPNRKHIEKLDLSNNLIST---INLNLNNTYYIKDLIL  168 (325)
Q Consensus       116 ~~~L~~L~l~~~~-~~~~~----~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l  168 (325)
                      +++|+.|.+..|. ++...    ...++.|++|+++++....   +.....++++++.+.+
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence            6667776665554 34211    3355567777776655421   1222344555555443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.48  E-value=0.0095  Score=27.11  Aligned_cols=16  Identities=38%  Similarity=0.412  Sum_probs=7.1

Q ss_pred             CCCEEECCCCcCcccc
Q psy11652        279 RLSHLNLGYNFLNELI  294 (325)
Q Consensus       279 ~L~~L~l~~n~i~~~~  294 (325)
                      +|+.|++++|+++.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4566666666655543

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.16  E-value=0.018  Score=28.20  Aligned_cols=17  Identities=12%  Similarity=0.155  Sum_probs=12.5

Q ss_pred             ccceEEcCCCceeeecC
Q psy11652         28 LLMSAENEDNQIAELET   44 (325)
Q Consensus        28 ~L~~L~l~~~~i~~~~~   44 (325)
                      +|++|++++|.++.+|.
T Consensus         1 ~L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             TESEEEETSSEESEEGT
T ss_pred             CccEEECCCCcCEeCCh
Confidence            46777777777777777

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.89  E-value=0.016  Score=28.39  Aligned_cols=20  Identities=20%  Similarity=0.336  Sum_probs=13.8

Q ss_pred             CccEEECCCCcccccc-cccC
Q psy11652         54 KLTTLFIGENHIHQIE-NLNG   73 (325)
Q Consensus        54 ~L~~L~l~~~~~~~~~-~~~~   73 (325)
                      +|++|++++|.++.+| .|++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            4677888888777776 5443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.87  E-value=0.049  Score=27.75  Aligned_cols=21  Identities=29%  Similarity=0.256  Sum_probs=15.4

Q ss_pred             CCCCEEECCCCcCcccccccc
Q psy11652        278 KRLSHLNLGYNFLNELILESS  298 (325)
Q Consensus       278 ~~L~~L~l~~n~i~~~~~~~~  298 (325)
                      ++|+.|++++|.|+.+|+..+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            567788888888888776643

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.87  E-value=0.049  Score=27.75  Aligned_cols=21  Identities=29%  Similarity=0.256  Sum_probs=15.4

Q ss_pred             CCCCEEECCCCcCcccccccc
Q psy11652        278 KRLSHLNLGYNFLNELILESS  298 (325)
Q Consensus       278 ~~L~~L~l~~n~i~~~~~~~~  298 (325)
                      ++|+.|++++|.|+.+|+..+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            567788888888888776643

>KOG3864|consensus

Probab=93.27  E-value=0.019  Score=45.51  Aligned_cols=73  Identities=16%  Similarity=0.206  Sum_probs=53.2

Q ss_pred             CccEEECCCCcccccc--cccCCCCccEEEccCCCCccc---ccc---cCCccEEEeecCc-ccch--hhhccCCCCCEE
Q psy11652         54 KLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL---DSL---PKTMETLSVANNY-LVNY--LELNRMTSLKWI  122 (325)
Q Consensus        54 ~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~---~~l---~~~L~~L~l~~~~-l~~~--~~~~~~~~L~~L  122 (325)
                      .++.++-+++.|....  -+.+++.++.|.+.+|.--+.   +.+   .++|+.|++++|. ++..  ..+.++++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            6788888888877665  778888888888888753332   233   7889999998774 4444  677778888877


Q ss_pred             EccC
Q psy11652        123 VLSN  126 (325)
Q Consensus       123 ~l~~  126 (325)
                      .+++
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            7654

>KOG4308|consensus

Probab=93.02  E-value=0.0018  Score=59.36  Aligned_cols=38  Identities=32%  Similarity=0.331  Sum_probs=17.4

Q ss_pred             CCCCEEeCCCCccccc----ccchhccCccCCEEEccCCCCc
Q psy11652        232 KKLKYLYLHNNNIEFI----QNNTFEHLVNLKSISLSGNKLT  269 (325)
Q Consensus       232 ~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~L~l~~n~l~  269 (325)
                      ..++.++++.|.++..    ....+..++.++.+.+.+|.+.
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            3445555555555431    1122333445555555555544

>KOG4308|consensus

Probab=92.98  E-value=0.0012  Score=60.61  Aligned_cols=188  Identities=22%  Similarity=0.196  Sum_probs=122.7

Q ss_pred             ccEEECCCCcccccc------cccCCCCccEEEccCCCCccc------ccc--c-CCccEEEeecCcccch------hhh
Q psy11652         55 LTTLFIGENHIHQIE------NLNGFRSILWLNMDSNLLQTL------DSL--P-KTMETLSVANNYLVNY------LEL  113 (325)
Q Consensus        55 L~~L~l~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~------~~l--~-~~L~~L~l~~~~l~~~------~~~  113 (325)
                      +..|.+.+|.+.+-+      ++.....|..+++++|.+.+.      ..+  + ..++.|.+..|.++..      ..+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            777888888777544      677788888888988887754      222  3 5677777777766655      556


Q ss_pred             ccCCCCCEEEccCCccee-----ec--C----CCCCCccEEEccCCccccc-----hhhccCCCC-ccEEEccCCcCccc
Q psy11652        114 NRMTSLKWIVLSNNYIKE-----FV--I----PNRKHIEKLDLSNNLISTI-----NLNLNNTYY-IKDLILSYNQISKL  176 (325)
Q Consensus       114 ~~~~~L~~L~l~~~~~~~-----~~--~----~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~-L~~L~l~~~~l~~~  176 (325)
                      .....++.++++.|.+..     ++  .    ....++++|.+.+|.++..     ...+...+. +..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            667788888888887641     11  1    2467888888888887643     233444555 66688888876632


Q ss_pred             -----ccCccCC-ccccEEEcccCCCcccChh----hhhCccccCCEEEccCCCCcCchH-----hhhCCCCCCEEeCCC
Q psy11652        177 -----NANTFRN-LNVFRLYLKFNKISEIHDF----AFNGLNSTLEFLDLENNRLTNINQ-----CFRNLKKLKYLYLHN  241 (325)
Q Consensus       177 -----~~~~~~~-~~L~~L~l~~~~l~~~~~~----~~~~~~~~L~~L~l~~~~l~~~~~-----~~~~~~~L~~L~l~~  241 (325)
                           .+..... ..++.++++.|.++.....    .+...+ .++++.++.|.+.....     .......+..+.+.+
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~-~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~  327 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCR-QLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG  327 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhH-HHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence                 2233333 5778899999988765443    334455 78888888888773322     333444555566655


Q ss_pred             Cc
Q psy11652        242 NN  243 (325)
Q Consensus       242 ~~  243 (325)
                      +.
T Consensus       328 ~~  329 (478)
T KOG4308|consen  328 TG  329 (478)
T ss_pred             cC
Confidence            54

>KOG3864|consensus

Probab=91.44  E-value=0.075  Score=42.29  Aligned_cols=81  Identities=16%  Similarity=0.044  Sum_probs=40.2

Q ss_pred             ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCC-c--CchHhhhCCCCCCEEeCCCC-cccccccchhccCccCC
Q psy11652        184 LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRL-T--NINQCFRNLKKLKYLYLHNN-NIEFIQNNTFEHLVNLK  259 (325)
Q Consensus       184 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l-~--~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~  259 (325)
                      ..++.++.+++.|....-..+..++ .++.|.+.++.- .  .+...-+..++|+.|++++| +|++.....+..+++|+
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~-~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLR-SIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccc-hhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            4555566666655554444555555 555555555432 1  11111123355666666655 45544444455555555


Q ss_pred             EEEccC
Q psy11652        260 SISLSG  265 (325)
Q Consensus       260 ~L~l~~  265 (325)
                      .|.+.+
T Consensus       180 ~L~l~~  185 (221)
T KOG3864|consen  180 RLHLYD  185 (221)
T ss_pred             HHHhcC
Confidence            555543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.13  E-value=0.37  Score=23.88  Aligned_cols=17  Identities=29%  Similarity=0.413  Sum_probs=10.7

Q ss_pred             CCCCCEEECCCCcCccc
Q psy11652        277 NKRLSHLNLGYNFLNEL  293 (325)
Q Consensus       277 ~~~L~~L~l~~n~i~~~  293 (325)
                      +++|++|++++|+|+..
T Consensus         1 ~~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDE   17 (24)
T ss_dssp             -TT-SEEE-TSSBEHHH
T ss_pred             CCCCCEEEccCCcCCHH
Confidence            46788888888887654

...

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=85.56  E-value=0.6  Score=23.78  Aligned_cols=18  Identities=33%  Similarity=0.313  Sum_probs=13.4

Q ss_pred             CCCCEEECCCCcCccccc
Q psy11652        278 KRLSHLNLGYNFLNELIL  295 (325)
Q Consensus       278 ~~L~~L~l~~n~i~~~~~  295 (325)
                      ++|+.|++++|+++.+|.
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            467777888888877775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	325
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		8e-05
1g9u_A	454	Crystal Structure Of Yopm-leucine Rich Effector Pro		6e-04

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 111/252 (44%), Gaps = 58/252 (23%)
Query: 35  EDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP 94
            D+  AE   AN    ++ K  T  + +N ++ I+       I+  N D   +Q +  LP
Sbjct: 14  PDDAFAETIKAN----LKKKSVTDAVTQNELNSIDQ------IIANNSDIKSVQGIQYLP 63
Query: 95  KTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDXXXXXXXXXX 154
             +  L++  N L +   L  +T+L +++L+ N ++   +PN    +KL           
Sbjct: 64  N-VRYLALGGNKLHDISALKELTNLTYLILTGNQLQS--LPN-GVFDKLTN--------- 110
Query: 155 XXXXXXYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEF 213
                   +K+L+L  NQ+  L    F  L N+  LYL  N++  +    F+ L + L  
Sbjct: 111 --------LKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKL-TNLTR 161
Query: 214 LDLENNRLTNINQCFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLTRIPD 273
           LDL+NN+L ++ +                         F+ L  LK +SL+ N+L  +PD
Sbjct: 162 LDLDNNQLQSLPE-----------------------GVFDKLTQLKQLSLNDNQLKSVPD 198
Query: 274 FIHNK--RLSHL 283
            + ++   L+H+
Sbjct: 199 GVFDRLTSLTHI 210

>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein From Yersinia Pestis Length = 454

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 49  PEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLV 108
           P++   L ++  G N + ++  L     +  +  D+NLL+TL  LP ++E L+V +NYL 
Sbjct: 211 PDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLT 270
Query: 109 NYLELNRMTSLKWIVLSNN 127
           +  EL +  SL ++ +S N
Sbjct: 271 DLPELPQ--SLTFLDVSEN 287

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	325
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-36
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-35
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-32
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-35
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-32
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-34
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-32
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-34
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-32
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-32
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-32
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-30
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-30
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-28
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-21
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-28
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-24
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-25
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-18
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-16
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-25
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-24
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-21
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-15
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-24
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-24
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-22
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-24
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-24
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-24
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-23
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-21
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-20
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-20
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-16
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-19
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-18
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-17
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-15
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-14
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-16
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-13
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-15
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-14
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-13
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-09
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-09
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-09
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	6e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	4e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	8e-05
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	7e-04

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  134 bits (340), Expect = 3e-36
 Identities = 60/278 (21%), Positives = 114/278 (41%), Gaps = 27/278 (9%)

Query: 36  DNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTL--- 90
            N+I  L    ++      L  L + EN +  +E    N   ++  L + SN L+ +   
Sbjct: 41  KNRIKTLNQDEFAS--FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG 98

Query: 91  --DSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPNR-----KHIE 141
               L   +  L ++ N +  +       + +LK + + +N +    I +R       +E
Sbjct: 99  VFTGLSN-LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY--ISHRAFSGLNSLE 155

Query: 142 KLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNK-ISE 198
           +L L    +++I    L++ + +  L L +  I+ +   +F+ L  +  L +     +  
Sbjct: 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215

Query: 199 IHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVN 257
           +      GLN  L  L + +  LT +     R+L  L++L L  N I  I+ +    L+ 
Sbjct: 216 MTPNCLYGLN--LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR 273

Query: 258 LKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
           L+ I L G +L  +    F     L  LN+  N L  L
Sbjct: 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  124 bits (312), Expect = 3e-32
 Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 6/160 (3%)

Query: 139 HIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKI 196
               LDL  N I T+N +   +  ++++L L+ N +S +    F NL N+  L L+ N++
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 197 SEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHL 255
             I    F GL++ L  LD+  N++  + +  F++L  LK L + +N++ +I +  F  L
Sbjct: 93  KLIPLGVFTGLSN-LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151

Query: 256 VNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
            +L+ ++L    LT IP     H   L  L L +  +N +
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  116 bits (292), Expect = 2e-29
 Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 7/155 (4%)

Query: 143 LDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHD 201
           +         +   +      + L L  N+I  LN + F +  ++  L L  N +S +  
Sbjct: 16  VLCHRKRFVAVPEGIPTE--TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP 73

Query: 202 FAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKS 260
            AFN L + L  L L +NRL  I    F  L  L  L +  N I  + +  F+ L NLKS
Sbjct: 74  GAFNNLFN-LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132

Query: 261 ISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
           + +  N L  I    F     L  L L    L  +
Sbjct: 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  130 bits (329), Expect = 1e-35
 Identities = 65/256 (25%), Positives = 111/256 (43%), Gaps = 24/256 (9%)

Query: 54  KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDS-LPKTMETLSVANNYLVNY 110
            L TL +  N I +I          +  L +  N L+ L   +PKT++ L V  N +   
Sbjct: 77  NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV 136

Query: 111 LE--LNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKLDLSNNLISTINLNLNNTYYI 163
            +   N +  +  + L  N +K   I N      K +  + +++  I+TI   L  +  +
Sbjct: 137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS--L 194

Query: 164 KDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT 222
            +L L  N+I+K++A + + L N+ +L L FN IS + + +       L  L L NN+L 
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT-PHLRELHLNNNKLV 253

Query: 223 NINQCFRNLKKLKYLYLHNNNIEFIQNNTF------EHLVNLKSISLSGNKL--TRIPD- 273
            +     + K ++ +YLHNNNI  I +N F          +   +SL  N +    I   
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313

Query: 274 -FIHNKRLSHLNLGYN 288
            F      + + LG  
Sbjct: 314 TFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  122 bits (308), Expect = 1e-32
 Identities = 45/253 (17%), Positives = 102/253 (40%), Gaps = 30/253 (11%)

Query: 49  PEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNY 106
            ++      L +  N I +I++      +++  L + +N +  +   P            
Sbjct: 48  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--PGA---------- 95

Query: 107 LVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLN-LNNTYYIKD 165
                    +  L+ + LS N +KE      K +++L +  N I+ +  +  N    +  
Sbjct: 96  ------FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 149

Query: 166 LILSYNQI--SKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT 222
           + L  N +  S +    F+ +  +  + +    I+ I          +L  L L+ N++T
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP----PSLTELHLDGNKIT 205

Query: 223 NIN-QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRL 280
            ++    + L  L  L L  N+I  + N +  +  +L+ + L+ NKL ++P     +K +
Sbjct: 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 265

Query: 281 SHLNLGYNFLNEL 293
             + L  N ++ +
Sbjct: 266 QVVYLHNNNISAI 278

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.9 bits (208), Expect = 2e-18
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 7/116 (6%)

Query: 185 NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNN 243
           +   L L+ NKI+EI D  F  L + L  L L NN+++ I    F  L KL+ LYL  N 
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKN-LHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 244 IEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILES 297
           ++ +     +    L+ + +  N++T++    F    ++  + LG N L    +E+
Sbjct: 112 LKELPEKMPK---TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  132 bits (335), Expect = 1e-35
 Identities = 47/215 (21%), Positives = 94/215 (43%), Gaps = 16/215 (7%)

Query: 91  DSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKL 143
             +P     L++  N +  +       +  L+ + L  N I++  I          +  L
Sbjct: 71  QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ--IEVGAFNGLASLNTL 128

Query: 144 DLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYL-KFNKISEIH 200
           +L +N ++ I          +++L L  N I  + +  F  + ++ RL L +  K+  I 
Sbjct: 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188

Query: 201 DFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKS 260
           + AF GL + L++L+L    + ++      L  L+ L +  N+   I+  +F  L +LK 
Sbjct: 189 EGAFEGLFN-LKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246

Query: 261 ISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
           + +  ++++ I    F     L  LNL +N L+ L
Sbjct: 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  122 bits (308), Expect = 7e-32
 Identities = 56/253 (22%), Positives = 101/253 (39%), Gaps = 36/253 (14%)

Query: 49  PEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNY 106
             I +    L + EN+I  I+         +  L +  N ++ ++               
Sbjct: 71  QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE--VGA---------- 118

Query: 107 LVNYLELNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKLDLSNNLISTINLN-LNNT 160
                  N + SL  + L +N++    IP+        + +L L NN I +I     N  
Sbjct: 119 ------FNGLASLNTLELFDNWLTV--IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170

Query: 161 YYIKDLILS-YNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLEN 218
             +  L L    ++  ++   F  L N+  L L    I ++ +     L   LE L++  
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLT--PLVG-LEELEMSG 227

Query: 219 NRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FI 275
           N    I    F  L  LK L++ N+ +  I+ N F+ L +L  ++L+ N L+ +P   F 
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287

Query: 276 HNKRLSHLNLGYN 288
             + L  L+L +N
Sbjct: 288 PLRYLVELHLHHN 300

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  128 bits (323), Expect = 1e-34
 Identities = 55/255 (21%), Positives = 102/255 (40%), Gaps = 23/255 (9%)

Query: 54  KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDS-LPKTMETLSVANNYL--V 108
            L  L +  N I +I     +  R +  L +  N L  +   LP ++  L + +N +  V
Sbjct: 79  HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKV 138

Query: 109 NYLELNRMTSLKWIVLSNNYIKEFVIPNRK----HIEKLDLSNNLISTINLNLNNTYYIK 164
                + + ++  I +  N ++             +  L +S   ++ I  +L  T  + 
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET--LN 196

Query: 165 DLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN 223
           +L L +N+I  +          ++RL L  N+I  I + + + L + L  L L+NN+L+ 
Sbjct: 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT-LRELHLDNNKLSR 255

Query: 224 INQCFRNLKKLKYLYLHNNNIEFIQNNTFEHL------VNLKSISLSGNKLT--RIPD-- 273
           +     +LK L+ +YLH NNI  +  N F  +           ISL  N +    +    
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315

Query: 274 FIHNKRLSHLNLGYN 288
           F        +  G  
Sbjct: 316 FRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  122 bits (308), Expect = 1e-32
 Identities = 48/246 (19%), Positives = 93/246 (37%), Gaps = 29/246 (11%)

Query: 55  LTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLE 112
            T L +  N I ++      G + +  L + +N +  +    K                 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH--EKA---------------- 97

Query: 113 LNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYN 171
            + +  L+ + +S N++ E        + +L + +N I  +     +    +  + +  N
Sbjct: 98  FSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157

Query: 172 QI--SKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CF 228
            +  S      F  L +  L +   K++ I          TL  L L++N++  I     
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP----ETLNELHLDHNKIQAIELEDL 213

Query: 229 RNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGY 287
               KL  L L +N I  I+N +   L  L+ + L  NKL+R+P      K L  + L  
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHT 273

Query: 288 NFLNEL 293
           N + ++
Sbjct: 274 NNITKV 279

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.2 bits (232), Expect = 7e-22
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 11/161 (6%)

Query: 138 KHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNK 195
                LDL NN IS +  +      ++  L+L  N+ISK++   F  L  + +LY+  N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 196 ISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIE--FIQNNTF 252
           + EI         S+L  L + +NR+  + +  F  L+ +  + +  N +E    +   F
Sbjct: 114 LVEIPPNLP----SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 253 EHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
           + L  L  + +S  KLT IP  +  + L+ L+L +N +  +
Sbjct: 170 DGL-KLNYLRISEAKLTGIPKDLP-ETLNELHLDHNKIQAI 208

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.9 bits (208), Expect = 1e-18
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 7/116 (6%)

Query: 185 NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNN 243
           +   L L+ N ISE+    F GL   L  L L NN+++ I  + F  L+KL+ LY+  N+
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQH-LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 244 IEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILES 297
           +  I  N    LV L    +  N++ ++P   F   + ++ + +G N L     E 
Sbjct: 114 LVEIPPNLPSSLVEL---RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  130 bits (328), Expect = 1e-34
 Identities = 52/215 (24%), Positives = 100/215 (46%), Gaps = 16/215 (7%)

Query: 91  DSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKL 143
           D +      L++  N +  +       +  L+ + LS N+I+   I         ++  L
Sbjct: 60  DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT--IEIGAFNGLANLNTL 117

Query: 144 DLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYL-KFNKISEIH 200
           +L +N ++TI          +K+L L  N I  + +  F  + ++ RL L +  ++S I 
Sbjct: 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177

Query: 201 DFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKS 260
           + AF GL++ L +L+L    L  I      L KL  L L  N++  I+  +F+ L++L+ 
Sbjct: 178 EGAFEGLSN-LRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235

Query: 261 ISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
           + +  +++  I    F + + L  +NL +N L  L
Sbjct: 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  122 bits (309), Expect = 5e-32
 Identities = 62/253 (24%), Positives = 106/253 (41%), Gaps = 36/253 (14%)

Query: 49  PEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNY 106
             I      L + EN I  I+       R +  L +  N ++T++               
Sbjct: 60  DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE--IGA---------- 107

Query: 107 LVNYLELNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKLDLSNNLISTINLNL-NNT 160
                  N + +L  + L +N +    IPN        +++L L NN I +I     N  
Sbjct: 108 ------FNGLANLNTLELFDNRLTT--IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159

Query: 161 YYIKDLILS-YNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLEN 218
             ++ L L    ++S ++   F  L N+  L L    + EI +     L   L+ LDL  
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLT--PL-IKLDELDLSG 216

Query: 219 NRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FI 275
           N L+ I    F+ L  L+ L++  + I+ I+ N F++L +L  I+L+ N LT +P   F 
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276

Query: 276 HNKRLSHLNLGYN 288
               L  ++L +N
Sbjct: 277 PLHHLERIHLHHN 289

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  120 bits (303), Expect = 2e-32
 Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 14/188 (7%)

Query: 117 TSLKWIVLSNNYIKEFVIPNR-----KHIEKLDLSNNLISTINLN-LNNTYYIKDLILSY 170
            + + I L  N I    +P       +++  L L +N+++ I+         ++ L LS 
Sbjct: 32  AASQRIFLHGNRISH--VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 171 N-QISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQC 227
           N Q+  ++  TF  L  +  L+L    + E+    F GL + L++L L++N L  + +  
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA-LQYLYLQDNALQALPDDT 148

Query: 228 FRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNL 285
           FR+L  L +L+LH N I  +    F  L +L  + L  N++  +    F    RL  L L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 286 GYNFLNEL 293
             N L+ L
Sbjct: 209 FANNLSAL 216

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  120 bits (302), Expect = 4e-32
 Identities = 50/211 (23%), Positives = 89/211 (42%), Gaps = 16/211 (7%)

Query: 91  DSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKL 143
             +P   + + +  N +  V         +L  + L +N +    I          +E+L
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR--IDAAAFTGLALLEQL 85

Query: 144 DLSNNL-ISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIH 200
           DLS+N  + +++    +    +  L L    + +L    FR L  +  LYL+ N +  + 
Sbjct: 86  DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145

Query: 201 DFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK 259
           D  F  L + L  L L  NR++++  + FR L  L  L LH N +  +  + F  L  L 
Sbjct: 146 DDTFRDLGN-LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 260 SISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
           ++ L  N L+ +P       + L +L L  N
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  101 bits (255), Expect = 2e-25
 Identities = 53/236 (22%), Positives = 93/236 (39%), Gaps = 46/236 (19%)

Query: 36  DNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSL 93
            N+I+ +  A++       LT L++  N + +I+     G   +  L++  N    L S+
Sbjct: 41  GNRISHVPAASFRA--CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ--LRSV 96

Query: 94  PKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI 153
                               + +  L                       L L    +  +
Sbjct: 97  DPAT---------------FHGLGRLHT---------------------LHLDRCGLQEL 120

Query: 154 NLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTL 211
                     ++ L L  N +  L  +TFR+L N+  L+L  N+IS + + AF GL+S L
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS-L 179

Query: 212 EFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN 266
           + L L  NR+ ++    FR+L +L  LYL  NN+  +       L  L+ + L+ N
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  118 bits (297), Expect = 3e-30
 Identities = 65/259 (25%), Positives = 103/259 (39%), Gaps = 30/259 (11%)

Query: 53  NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLE 112
            +   L +  N +  I           LN        L     T++ ++           
Sbjct: 154 RRFHVLDLTFNKVKSICEE------DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 113 LNRMTSLKWIVLSNNYIKE------FVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKD- 165
             + TS+  + LS N  KE      F       I+ L LSN+     +    N     + 
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 166 ------------LILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLE 212
                         LS ++I  L  + F +  ++ +L L  N+I++I D AF GL   L 
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH-LL 326

Query: 213 FLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRI 271
            L+L  N L +I ++ F NL KL+ L L  N+I  + + +F  L NLK ++L  N+L  +
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386

Query: 272 PD--FIHNKRLSHLNLGYN 288
           PD  F     L  + L  N
Sbjct: 387 PDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 95.6 bits (238), Expect = 3e-22
 Identities = 62/304 (20%), Positives = 106/304 (34%), Gaps = 48/304 (15%)

Query: 35  EDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFR---SILWLNMDSNLLQTL- 90
             N IAEL   ++S      L  L + +     +   N FR   S++ L +D N    L 
Sbjct: 38  SLNSIAELNETSFSR--LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE 95

Query: 91  ----DSLPKTMETLSVANNYLVNYL----ELNRMTSLKWIVLSNNYIKEF----VIPNRK 138
               + L   +E L++    L   +        +TSL+ +VL +N IK+        N +
Sbjct: 96  TGAFNGLAN-LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154

Query: 139 HIEKLDLSNNLISTI-----------NLNLNNTYYIKDLILSYNQISKLNANTFRNLNVF 187
               LDL+ N + +I           +  L     I    ++   +              
Sbjct: 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSI 214

Query: 188 R-LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLK-------------- 232
             L L  N   E     F    +  +   L  +   N+   F +                
Sbjct: 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274

Query: 233 -KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNF 289
             +K   L  + I  +  + F H  +L+ ++L+ N++ +I D  F     L  LNL  NF
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334

Query: 290 LNEL 293
           L  +
Sbjct: 335 LGSI 338

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 95.6 bits (238), Expect = 4e-22
 Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 12/166 (7%)

Query: 139 HIEKLDLSNNLISTIN-LNLNNTYYIKDLILSYNQIS-KLNANTFRNL-NVFRLYLKFNK 195
           H+  +DLS N I+ +N  + +    ++ L +        +  NTFR L ++  L L +N+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 196 ISEIHDFAFNGLNSTLEFLDLENNRLTNI---NQCFRNLKKLKYLYLHNNNIEFIQNNT- 251
             ++   AFNGL + LE L L    L         F+ L  L+ L L +NNI+ IQ  + 
Sbjct: 91  FLQLETGAFNGLAN-LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 252 FEHLVNLKSISLSGNKLTRIP----DFIHNKRLSHLNLGYNFLNEL 293
           F ++     + L+ NK+  I          K  + L L    L ++
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 84.0 bits (208), Expect = 3e-18
 Identities = 50/293 (17%), Positives = 102/293 (34%), Gaps = 52/293 (17%)

Query: 49  PEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQT------LDSLPKTMETL 100
           PE+   +  + +  N I ++     +  + + +L ++               L   +  L
Sbjct: 26  PELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS-LIIL 84

Query: 101 SVANNYLVNYLE--LNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKLDLSNNLISTI 153
            +  N  +       N + +L+ + L+   +   V+          +E L L +N I  I
Sbjct: 85  KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144

Query: 154 NL-----NLNNTYYIKDLILSYNQISKLNANTFRNL---NVFRLYLKFNKISEIHDFAFN 205
                  N+        L L++N++  +      N    +   L L    + +++++   
Sbjct: 145 QPASFFLNMRR---FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201

Query: 206 GL-------NSTLEFLDLENNRLTNINQ----CFRNLKKLKYLYLHN----------NNI 244
                    N+++  LDL  N                 K++ L L N           N 
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261

Query: 245 EFIQNNTFEHLV--NLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
           +   N TF+ L    +K+  LS +K+  +    F H   L  L L  N +N++
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 75.9 bits (187), Expect = 1e-15
 Identities = 44/196 (22%), Positives = 84/196 (42%), Gaps = 8/196 (4%)

Query: 54  KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLEL 113
            +TTL +  N   +      F   +      +L+ +      +    +   +      + 
Sbjct: 213 SITTLDLSGNGFKESMA-KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 114 NRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLN-LNNTYYIKDLILS 169
              + +K   LS + I      V  +   +E+L L+ N I+ I+ N      ++  L LS
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331

Query: 170 YNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQC 227
            N +  +++  F NL  +  L L +N I  + D +F GL + L+ L L+ N+L ++ +  
Sbjct: 332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN-LKELALDTNQLKSVPDGI 390

Query: 228 FRNLKKLKYLYLHNNN 243
           F  L  L+ ++LH N 
Sbjct: 391 FDRLTSLQKIWLHTNP 406

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  115 bits (290), Expect = 3e-30
 Identities = 44/216 (20%), Positives = 92/216 (42%), Gaps = 14/216 (6%)

Query: 91  DSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKL 143
             +P +   L + +N L  + +   +++T L  + LS+N +      ++       ++ L
Sbjct: 24  TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 144 DLSNNLISTINLNLNNTYYIKDLILSYNQISKLNA-NTFRNL-NVFRLYLKFNKISEIHD 201
           DLS N + T++ N      ++ L   ++ + +++  + F +L N+  L +         +
Sbjct: 84  DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143

Query: 202 FAFNGLNSTLEFLDLENNRLTN--INQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK 259
             FNGL+S LE L +  N      +   F  L+ L +L L    +E +    F  L +L+
Sbjct: 144 GIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202

Query: 260 SISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
            +++S N    +    +     L  L+   N +   
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  108 bits (272), Expect = 1e-27
 Identities = 50/251 (19%), Positives = 94/251 (37%), Gaps = 39/251 (15%)

Query: 55  LTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLE 112
            T L +  N +  + +   +    +  L++ SN L       ++                
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT------------ 77

Query: 113 LNRMTSLKWIVLSNNYIKEFVIPNR----KHIEKLDLSNNLISTIN-----LNLNNTYYI 163
               TSLK++ LS N +    + +     + +E LD  ++ +  ++     L+L N   +
Sbjct: 78  ----TSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN---L 128

Query: 164 KDLILSYNQISKLNANTFRNL-NVFRLYLKFNK-ISEIHDFAFNGLNSTLEFLDLENNRL 221
             L +S+          F  L ++  L +  N          F  L + L FLDL   +L
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN-LTFLDLSQCQL 187

Query: 222 TNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIH-N 277
             +    F +L  L+ L + +NN   +    ++ L +L+ +  S N +         H  
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247

Query: 278 KRLSHLNLGYN 288
             L+ LNL  N
Sbjct: 248 SSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.8 bits (218), Expect = 5e-20
 Identities = 43/212 (20%), Positives = 88/212 (41%), Gaps = 25/212 (11%)

Query: 54  KLTTLFIGENHIHQIE----NLNGFRSILWLNMDSNLLQTLDS----LPKTMETLSVANN 105
           +LT L +  N +        +  G  S+ +L++  N + T+ S    L + +E L   ++
Sbjct: 53  QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ-LEHLDFQHS 111

Query: 106 YLVNYLELN---RMTSLKWIVLSNNYIKEFVIPNR-----KHIEKLDLS-NNLISTINLN 156
            L    E +    + +L ++ +S+ + +  V  N        +E L ++ N+       +
Sbjct: 112 NLKQMSEFSVFLSLRNLIYLDISHTHTR--VAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

Query: 157 -LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFL 214
                  +  L LS  Q+ +L+   F +L ++  L +  N    +  F +  LNS L+ L
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS-LQVL 228

Query: 215 DLENNRLTNINQ-CFRNL-KKLKYLYLHNNNI 244
           D   N +    +   ++    L +L L  N+ 
Sbjct: 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 81.2 bits (201), Expect = 8e-18
 Identities = 37/201 (18%), Positives = 80/201 (39%), Gaps = 16/201 (7%)

Query: 36  DNQIAELETANWSPEIQNKLTTLFIGENHIHQI-ENLNGFRSILWLNMDSNLLQTL---- 90
            N ++     + S      L  L +  N +  +  N  G   +  L+   + L+ +    
Sbjct: 61  SNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 120

Query: 91  --DSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPNR----KHIEK 142
              SL   +  L +++ +         N ++SL+ + ++ N  +E  +P+     +++  
Sbjct: 121 VFLSLRN-LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179

Query: 143 LDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIH 200
           LDLS   +  ++    N+   ++ L +S+N    L+   ++ L ++  L    N I    
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239

Query: 201 DFAFNGLNSTLEFLDLENNRL 221
                   S+L FL+L  N  
Sbjct: 240 KQELQHFPSSLAFLNLTQNDF 260

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  117 bits (295), Expect = 1e-29
 Identities = 50/248 (20%), Positives = 106/248 (42%), Gaps = 13/248 (5%)

Query: 53  NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL-PKTMETLSVANNYLVNYL 111
             +++  +    I ++++ +       L + +       +L  K+++ L+  +N   N  
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341

Query: 112 ELNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKLDLSNNLISTINLNLNNTYYIKDL 166
               + SL+++ LS N +      ++       ++ LDLS N + T++ N      ++ L
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 401

Query: 167 ILSYNQISKL-NANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI 224
              ++ + ++   + F +L N+  L +         +  FNGL+S LE L +  N     
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQEN 460

Query: 225 --NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRL 280
                F  L+ L +L L    +E +    F  L +L+ ++++ N+L  +PD  F     L
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520

Query: 281 SHLNLGYN 288
             + L  N
Sbjct: 521 QKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 97.9 bits (244), Expect = 9e-23
 Identities = 48/262 (18%), Positives = 104/262 (39%), Gaps = 22/262 (8%)

Query: 50  EIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP----------KTMET 99
           E+   +   F  E ++ + +  +    +  L ++   L  LD               + +
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDK-SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286

Query: 100 LSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNN 159
            S+ +  +    + +     + + L N    +F     K +++L  ++N        ++ 
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346

Query: 160 TYYIKDLILSYNQISK--LNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDL 216
              ++ L LS N +S     + +     ++  L L FN +  +    F GL   LE LD 
Sbjct: 347 PS-LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQ-LEHLDF 403

Query: 217 ENNRLTNINQ--CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD- 273
           +++ L  +++   F +L+ L YL + + +     N  F  L +L+ + ++GN        
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 274 --FIHNKRLSHLNLGYNFLNEL 293
             F   + L+ L+L    L +L
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQL 485

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 95.9 bits (239), Expect = 4e-22
 Identities = 55/268 (20%), Positives = 98/268 (36%), Gaps = 29/268 (10%)

Query: 54  KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSL----PKTMETLSVANNYL 107
           +L  L +    I  IE+        +  L +  N +Q+L         +++ L      L
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

Query: 108 --VNYLELNRMTSLKWIVLSNNYIKEFVIPNR----KHIEKLDLSNNLISTINLNL---- 157
             +    +  + +LK + +++N I+ F +P       ++E LDLS+N I +I        
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 158 -NNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKIS-EIHDFAFNGLNSTLEFLD 215
                    L LS N ++ +    F+ + + +L L+ N  S  +      GL   LE   
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG-LEVHR 231

Query: 216 LENNRLTNINQ-------CFRNLKKLKYLYLHNNNIEFIQNN---TFEHLVNLKSISLSG 265
           L      N              L  L         +++  ++    F  L N+ S SL  
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 266 NKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
             + R+ DF +N    HL L      + 
Sbjct: 292 VTIERVKDFSYNFGWQHLELVNCKFGQF 319

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 95.6 bits (238), Expect = 5e-22
 Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 8/155 (5%)

Query: 144 DLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDF 202
                    I  NL  +   K+L LS+N +  L + +F +   +  L L   +I  I D 
Sbjct: 13  QCMELNFYKIPDNLPFS--TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 203 AFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSI 261
           A+  L+  L  L L  N + ++    F  L  L+ L     N+  ++N    HL  LK +
Sbjct: 71  AYQSLSH-LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 262 SLSGNKLTRIPD---FIHNKRLSHLNLGYNFLNEL 293
           +++ N +        F +   L HL+L  N +  +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 81.7 bits (202), Expect = 2e-17
 Identities = 48/230 (20%), Positives = 92/230 (40%), Gaps = 13/230 (5%)

Query: 82  MDSNLLQTLDSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEF---VIPN 136
           M+ N  +  D+LP + + L ++ N L  +          L+ + LS   I+        +
Sbjct: 15  MELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74

Query: 137 RKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFN 194
             H+  L L+ N I ++ L   +    ++ L+     ++ L      +L  +  L +  N
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 195 KISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKY----LYLHNNNIEFIQN 249
            I       +    + LE LDL +N++ +I     R L ++      L L  N + FIQ 
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 250 NTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSI 299
             F+ +  L  ++L  N  +        + L+ L +    L E   E ++
Sbjct: 195 GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 81.7 bits (202), Expect = 2e-17
 Identities = 59/291 (20%), Positives = 106/291 (36%), Gaps = 46/291 (15%)

Query: 54  KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLP----KTMETLSVANNYL 107
            L+TL +  N I  +     +G  S+  L      L +L++ P    KT++ L+VA+N +
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 108 VNY---LELNRMTSLKWIVLSNNYIKEFVIPN-------RKHIEKLDLSNNLISTINLNL 157
            ++      + +T+L+ + LS+N I+     +             LDLS N ++ I    
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 158 NNTYYIKDLILSYNQIS-KLNANTFRNL-------NVFRLYLKFNKISEIHDFAFNGL-N 208
                +  L L  N  S  +     + L        V   +     + +    A  GL N
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 209 STLEFLDLENNRL--TNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEH------------ 254
            T+E   L        +I   F  L  +    L +  IE +++ ++              
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316

Query: 255 -------LVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESS 298
                  L +LK ++ + NK       +    L  L+L  N L+     S 
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.4 bits (196), Expect = 1e-16
 Identities = 43/247 (17%), Positives = 85/247 (34%), Gaps = 18/247 (7%)

Query: 54  KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVN-YLE 112
           +L  L +  N           + +  L +   +L    +     +    A   L N  +E
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 113 LNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQ 172
             R+  L + +         +     ++    L +  I  +  + +  +  + L L   +
Sbjct: 261 EFRLAYLDYYLDDIID----LFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCK 315

Query: 173 ISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQC---FR 229
             +      ++L   RL    NK              +LEFLDL  N L+    C     
Sbjct: 316 FGQFPTLKLKSLK--RLTFTSNKGGNAFSEVDL---PSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD---FIHNKRLSHLNLG 286
               LKYL L  N +  + +N F  L  L+ +    + L ++ +   F+  + L +L++ 
Sbjct: 371 GTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 287 YNFLNEL 293
           +      
Sbjct: 430 HTHTRVA 436

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  117 bits (295), Expect = 1e-29
 Identities = 47/253 (18%), Positives = 99/253 (39%), Gaps = 13/253 (5%)

Query: 54  KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP-KTMETLSVANNYLVNYLE 112
            ++ + +    I  +E++        L++    L+   +L    +++L++  N      +
Sbjct: 286 NVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFK 345

Query: 113 LNRMTSLKWIVLSNNYIKE-----FVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLI 167
              + SL ++ LS N +       +       +  LDLS N    ++ N      ++ L 
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405

Query: 168 LSYNQISKL-NANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI- 224
             ++ + ++   + F +L  +  L + +       D  F GL S L  L +  N   +  
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS-LNTLKMAGNSFKDNT 464

Query: 225 -NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLS 281
            +  F N   L +L L    +E I    F+ L  L+ +++S N L  +    +     LS
Sbjct: 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524

Query: 282 HLNLGYNFLNELI 294
            L+  +N +    
Sbjct: 525 TLDCSFNRIETSK 537

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  103 bits (259), Expect = 1e-24
 Identities = 47/261 (18%), Positives = 94/261 (36%), Gaps = 19/261 (7%)

Query: 50  EIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLPKT------METLS 101
            +   +   F  E ++   E   + G   +                         +  +S
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291

Query: 102 VANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTY 161
           +A   +    ++ +    + + +    +K+F   +   ++ L L+ N  S          
Sbjct: 292 LAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSIS-FKKVALP 350

Query: 162 YIKDLILSYNQISKLNANTFRNLNVFR---LYLKFNKISEIHDFAFNGLNSTLEFLDLEN 218
            +  L LS N +S     ++ +L       L L FN    I    F GL   L+ LD ++
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEE-LQHLDFQH 408

Query: 219 NRLTNIN--QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--- 273
           + L  +     F +L+KL YL +   N +   +  F  L +L ++ ++GN          
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

Query: 274 FIHNKRLSHLNLGYNFLNELI 294
           F +   L+ L+L    L ++ 
Sbjct: 469 FANTTNLTFLDLSKCQLEQIS 489

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  101 bits (253), Expect = 6e-24
 Identities = 52/267 (19%), Positives = 96/267 (35%), Gaps = 28/267 (10%)

Query: 54  KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLP----KTMETLSVANNYL 107
           +L  L +    I  IE+   +G   +  L +  N +Q+          ++E L      L
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 108 --VNYLELNRMTSLKWIVLSNNYIKEFVIP----NRKHIEKLDLSNNLISTINLNL---- 157
             +    + ++ +LK + +++N+I    +P    N  ++  +DLS N I TI +N     
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 158 -NNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKIS-EIHDFAFNGLNSTLEFLD 215
             N      L +S N I  +    F+ + +  L L+ N  S  I       L   L    
Sbjct: 177 RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAG-LHVHR 235

Query: 216 LENNRLTNINQ-------CFRNLKKLKY--LYLHNNNIEFIQNNTFEHLVNLKSISLSGN 266
           L      +              L  +      L   N        F  L N+ ++SL+G 
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

Query: 267 KLTRIPDFIHNKRLSHLNLGYNFLNEL 293
            +  + D   + +   L++    L + 
Sbjct: 296 SIKYLEDVPKHFKWQSLSIIRCQLKQF 322

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  100 bits (252), Expect = 7e-24
 Identities = 34/160 (21%), Positives = 73/160 (45%), Gaps = 8/160 (5%)

Query: 143 LDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHD 201
               +  +S +  ++ ++   K++ LS+N +  L + +F N   +  L L   +I  I D
Sbjct: 16  YQCMDQKLSKVPDDIPSS--TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED 73

Query: 202 FAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKS 260
            A++GL+  L  L L  N + + +   F  L  L+ L      +  +++     L+ LK 
Sbjct: 74  KAWHGLHH-LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 261 ISLSGNKLTRIPD---FIHNKRLSHLNLGYNFLNELILES 297
           ++++ N +        F +   L H++L YN++  + +  
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 90.5 bits (225), Expect = 2e-20
 Identities = 62/289 (21%), Positives = 108/289 (37%), Gaps = 45/289 (15%)

Query: 54  KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLP----KTMETLSVANNYL 107
            L+ L +  N I        +G  S+  L      L +L+S P     T++ L+VA+N++
Sbjct: 81  HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140

Query: 108 VNYLE---LNRMTSLKWIVLSNNYIKE-------FVIPNRKHIEKLDLSNNLISTINLNL 157
            +       + +T+L  + LS NYI+        F+  N +    LD+S N I  I    
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200

Query: 158 NNTYYIKDLILSYNQIS----KLNANTFRNLNVFRL----YLKFNKISEIHDFAFNGL-N 208
                + +L L  N  S    K        L+V RL    +     +         GL +
Sbjct: 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260

Query: 209 STLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEF-------------------IQ 248
            T++   L      + +   F  L  +  + L   +I++                   ++
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK 320

Query: 249 NNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILES 297
                 L  LKS++L+ NK +     +    LS+L+L  N L+     S
Sbjct: 321 QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCS 369

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 86.6 bits (215), Expect = 5e-19
 Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 6/135 (4%)

Query: 168 LSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQ 226
               ++SK+  +   +     + L FN +  +  ++F+   S L++LDL    +  I ++
Sbjct: 18  CMDQKLSKVPDDIPSSTK--NIDLSFNPLKILKSYSFSNF-SELQWLDLSRCEIETIEDK 74

Query: 227 CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLN 284
            +  L  L  L L  N I+     +F  L +L+++     KL  +          L  LN
Sbjct: 75  AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134

Query: 285 LGYNFLNELILESSI 299
           + +NF++   L +  
Sbjct: 135 VAHNFIHSCKLPAYF 149

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.8 bits (200), Expect = 5e-17
 Identities = 39/208 (18%), Positives = 75/208 (36%), Gaps = 18/208 (8%)

Query: 54  KLTTLFIGENHIHQIENLN----GFRSILWLNMDSNLLQTLDSLPKTM---ETLSVANNY 106
            L+ L +  N +      +    G  S+  L++  N    + +    +   + L   ++ 
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST 410

Query: 107 LVNYLE---LNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLN--LN 158
           L    E      +  L ++ +S    K     +      +  L ++ N      L+    
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470

Query: 159 NTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLE 217
           NT  +  L LS  Q+ +++   F  L  +  L +  N +  +    +N L S L  LD  
Sbjct: 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS-LSTLDCS 529

Query: 218 NNRLTNI-NQCFRNLKKLKYLYLHNNNI 244
            NR+           K L +  L NN++
Sbjct: 530 FNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.5 bits (199), Expect = 6e-17
 Identities = 46/230 (20%), Positives = 97/230 (42%), Gaps = 13/230 (5%)

Query: 82  MDSNLLQTLDSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIK---EFVIPN 136
           MD  L +  D +P + + + ++ N L  +     +  + L+W+ LS   I+   +     
Sbjct: 19  MDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG 78

Query: 137 RKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFN 194
             H+  L L+ N I + +    +    +++L+    +++ L +     L  + +L +  N
Sbjct: 79  LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138

Query: 195 KISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLK----YLYLHNNNIEFIQN 249
            I      A+    + L  +DL  N +  I     + L++       L +  N I+FIQ+
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198

Query: 250 NTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSI 299
             F+ +  L  ++L GN  +        + L+ L++    L E   E ++
Sbjct: 199 QAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  115 bits (289), Expect = 1e-28
 Identities = 58/290 (20%), Positives = 123/290 (42%), Gaps = 21/290 (7%)

Query: 29  LMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNL 86
           L     ED    ++  A +    +  + ++ + +++   I +   + F  +  L++ +  
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289

Query: 87  LQTLDSLPKTM---ETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPNR---- 137
           L  L S    +   + L ++ N    +  +  +   SL  + +  N  +  +        
Sbjct: 290 LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349

Query: 138 KHIEKLDLSNNLISTINLN---LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKF 193
           +++ +LDLS++ I T +     L N  +++ L LSYN+   L    F+    +  L L F
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409

Query: 194 NKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFI---QN 249
            ++      +       L+ L+L ++ L   + Q F  L  L++L L  N+       + 
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469

Query: 250 NTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILES 297
           N+ + L  L+ + LS   L+ I    F   K ++H++L +N L    +E+
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  107 bits (269), Expect = 5e-26
 Identities = 49/289 (16%), Positives = 102/289 (35%), Gaps = 46/289 (15%)

Query: 54  KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLP----KTMETLSVANNYL 107
           +L TL +  N +  +    L+G +++  L      + ++D +P    KT+E+L + +N++
Sbjct: 82  RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141

Query: 108 --VNYLELNRMTSLKWIVLSNNYIKE-----FVIPNRKHIEKLDLSNNLISTI------- 153
             +   +      LK +   NN I            +     L+L+ N I+ I       
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201

Query: 154 -------------------NLNLNNTYYIKDLILSYNQISKLNANTF---RNLNVFRLYL 191
                               L  +    +            ++   F     ++V  + L
Sbjct: 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261

Query: 192 KFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNT 251
           + +    I    F+  +  L+ LDL    L+ +      L  LK L L  N  E +   +
Sbjct: 262 QKHYFFNISSNTFHCFSG-LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS 320

Query: 252 FEHLVNLKSISLSGNKL-TRIPD--FIHNKRLSHLNLGYNFLNELILES 297
             +  +L  +S+ GN     +      + + L  L+L ++ +      +
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  107 bits (268), Expect = 7e-26
 Identities = 53/269 (19%), Positives = 108/269 (40%), Gaps = 24/269 (8%)

Query: 54  KLTTLFIGENHIHQI--ENLNGFRS--ILWLNMDSNLLQTLDSLP---KTMETLSVANNY 106
           KL  L    N IH +  E+++  +    L LN++ N +  ++         ++L+     
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213

Query: 107 L----VNYLELNRMTSLKWIVLSNNYIKE-----FVIPNRKHIEKLDLSNNLISTINLN- 156
                   L+ + + SL      +   ++     F       +E ++L  +    I+ N 
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273

Query: 157 LNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDL 216
            +    +++L L+   +S+L +       + +L L  NK   +   + +   S L  L +
Sbjct: 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS-LTHLSI 332

Query: 217 ENNRL--TNINQCFRNLKKLKYLYLHNNNIEFIQ--NNTFEHLVNLKSISLSGNKLTRIP 272
           + N         C  NL+ L+ L L +++IE     N    +L +L+S++LS N+   + 
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392

Query: 273 D--FIHNKRLSHLNLGYNFLNELILESSI 299
              F    +L  L+L +  L     +S  
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPF 421

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  102 bits (256), Expect = 2e-24
 Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 7/161 (4%)

Query: 141 EKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEI 199
           +  +  N  ++ I   L N+   + L  S+N +  +   TF  L N+  L L   +I  I
Sbjct: 15  KTYNCENLGLNEIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 200 HDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNL 258
           H+  F   +  L+ L L  N L  + +      K LK+L+     I  I      +   L
Sbjct: 73  HEDTFQSQHR-LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 259 KSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILES 297
           +S+ L  N ++ I        ++L  L+   N ++ L  E 
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  101 bits (253), Expect = 5e-24
 Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 8/162 (4%)

Query: 139 HIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKI 196
             E L+ S N++ TI N   +    +  L L+  QI  ++ +TF++   +  L L  N +
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 197 SEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHL 255
             + + A +G  + L+ L      +++I      N K L+ LYL +N+I  I+       
Sbjct: 94  IFMAETALSGPKA-LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 256 VNLKSISLSGNKLTRIP----DFIHNKRLSHLNLGYNFLNEL 293
             LK +    N +  +       +       LNL  N +  +
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  101 bits (253), Expect = 6e-24
 Identities = 38/190 (20%), Positives = 71/190 (37%), Gaps = 10/190 (5%)

Query: 117 TSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQ 172
            S + +  S N +            ++  LDL+   I  I+ +   + + +  L+L+ N 
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 173 ISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRN 230
           +  +          +  L+     IS I     +   + LE L L +N +++I       
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT-LESLYLGSNHISSIKLPKGFP 151

Query: 231 LKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISL--SGNKLTRIPDFI-HNKRLSHLNLGY 287
            +KLK L   NN I ++       L    ++SL  +GN +  I      +     LN G 
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

Query: 288 NFLNELILES 297
                +I + 
Sbjct: 212 TQNLLVIFKG 221

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 99.7 bits (249), Expect = 2e-23
 Identities = 57/266 (21%), Positives = 98/266 (36%), Gaps = 22/266 (8%)

Query: 49  PEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLD-----SLPKTMETLS 101
             + N    L    N +  I+N   +   ++ +L++    +  +      S  + ++TL 
Sbjct: 29  GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR-LDTLV 87

Query: 102 VANNYL--VNYLELNRMTSLKWIVLSNNYIK---EFVIPNRKHIEKLDLSNNLISTINLN 156
           +  N L  +    L+   +LK +      I       + N+K +E L L +N IS+I L 
Sbjct: 88  LTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147

Query: 157 -LNNTYYIKDLILSYNQISKLNANTF---RNLNVFRLYLKFNKISEIHDFAFNGLNSTLE 212
               T  +K L    N I  L+       +      L L  N I+ I   AF+       
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207

Query: 213 FLDLENNRLTNINQC-FRNLKKLKYLYLHNNNIEFIQNNTFEHL--VNLKSISLSGNKLT 269
                 N L          ++ L      + + E I    FE L  ++++SI+L  +   
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

Query: 270 RIPD--FIHNKRLSHLNLGYNFLNEL 293
            I    F     L  L+L    L+EL
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLSEL 293

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 87.4 bits (217), Expect = 3e-19
 Identities = 54/262 (20%), Positives = 100/262 (38%), Gaps = 49/262 (18%)

Query: 54  KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQT------LDSLPKTMETLSVANN 105
            L  L +  N    +     + F S+  L++  N  +       L++L   +  L ++++
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN-LRELDLSHD 360

Query: 106 YL----VNYLELNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLN-- 156
            +       L+L  ++ L+ + LS N               +E LDL+   +   +    
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 157 LNNTYYIKDLILSYNQISKLNANTFRNL----------------------------NVFR 188
             N + +K L LS++ +   +   F  L                             +  
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 189 LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFI 247
           L L F  +S I   AF  L   +  +DL +NRLT+ + +   +LK + YL L +N+I  I
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKM-MNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII 538

Query: 248 QNNTFEHLVNLKSISLSGNKLT 269
             +    L   ++I+L  N L 
Sbjct: 539 LPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.8 bits (213), Expect = 8e-19
 Identities = 40/251 (15%), Positives = 96/251 (38%), Gaps = 22/251 (8%)

Query: 36  DNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSL 93
            + I   +  N      + L +L +  N    ++         +  L++    L+  D+ 
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418

Query: 94  -----PKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEF------VIPNRKHI 140
                   ++ L+++++ L   +    + + +L+ + L  N+  +        +     +
Sbjct: 419 SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478

Query: 141 EKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEI 199
           E L LS   +S+I+ +   +   +  + LS+N+++  +     +L    L L  N IS I
Sbjct: 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISII 538

Query: 200 HDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKL-KYLYLHNNNIEFIQNNTFEHLVNL 258
                  L+     ++L  N L     C  +     ++   +   +E  ++   E+   L
Sbjct: 539 LPSLLPILSQ-QRTINLRQNPLD----CTCSNIYFLEWYKENMQKLEDTEDTLCENPPLL 593

Query: 259 KSISLSGNKLT 269
           + + LS   L+
Sbjct: 594 RGVRLSDVTLS 604

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  114 bits (288), Expect = 1e-28
 Identities = 71/289 (24%), Positives = 118/289 (40%), Gaps = 17/289 (5%)

Query: 36  DNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLN----GFRSILWLNMDSNLLQTLD 91
            NQI  L   + S    N L ++    N I  +          +++ + ++ +N L +  
Sbjct: 132 KNQIRSLY-LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190

Query: 92  SLPKTMETLSVANNYL-VNYLELNRMTSLKWIVLSNN--YIKEFVIPNRKHIEKLDLSNN 148
           S+          N  L +  +  N  T       SN     + F +    HI       +
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250

Query: 149 LISTINLNL---NNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAF 204
            I   + N         ++ L LS+  +  LN+  F  L ++  L L +NKI++I D AF
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310

Query: 205 NGLNSTLEFLDLENNRLTNINQC-FRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISL 263
            GL++ L+ L+L  N L  +    F  L K+ Y+ L  N+I  IQ+ TF+ L  L+++ L
Sbjct: 311 YGLDN-LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369

Query: 264 SGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFN 312
             N LT I        +  + L  N L  L   +       + +N L N
Sbjct: 370 RDNALTTIHFI---PSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN 415

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  109 bits (275), Expect = 8e-27
 Identities = 59/289 (20%), Positives = 112/289 (38%), Gaps = 32/289 (11%)

Query: 36  DNQIAELETANWSPEIQNKLTTLFIGENHIHQIE---NLNGFRSILWLNMDSNLLQTLDS 92
              +++    +        LT L + +N I  +    +     S+  ++  SN +  +  
Sbjct: 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165

Query: 93  L------PKTMETLSVANNYLVNYLELN--------RMTSLKWIVLSNNYIKEFVIPNRK 138
                   KT+   S+A N L + + ++        R   L+ + +S N     +  N  
Sbjct: 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN-- 223

Query: 139 HIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNL---NVFRLYLKFNK 195
                  SN +  +   +L   ++I      ++ I   + NTF  L   +V  L L    
Sbjct: 224 ------FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF 277

Query: 196 ISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEH 254
           +  ++   F  L   L+ L+L  N++  I ++ F  L  L+ L L  N +  + ++ F  
Sbjct: 278 VFSLNSRVFETLKD-LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336

Query: 255 LVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVE 301
           L  +  I L  N +  I D  F   ++L  L+L  N L  +    SI +
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  106 bits (266), Expect = 1e-25
 Identities = 57/304 (18%), Positives = 111/304 (36%), Gaps = 43/304 (14%)

Query: 29  LMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNL 86
           +M A    + I + +   ++   ++ +  L +    +  + +      + +  LN+  N 
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301

Query: 87  LQTLD----SLPKTMETLSVANNYLVNYLE--LNRMTSLKWIVLSNNYIKEF---VIPNR 137
           +  +          ++ L+++ N L          +  + +I L  N+I           
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361

Query: 138 KHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVF---------- 187
           + ++ LDL +N ++TI+   +    I D+ LS N++  L         +           
Sbjct: 362 EKLQTLDLRDNALTTIHFIPS----IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLD 417

Query: 188 ------------RLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQC------FR 229
                        L L  N+ S          N +LE L L  N L    +       F 
Sbjct: 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477

Query: 230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNF 289
            L  L+ LYL++N +  +    F HL  L+ +SL+ N+LT +        L  L++  N 
Sbjct: 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQ 537

Query: 290 LNEL 293
           L   
Sbjct: 538 LLAP 541

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 95.6 bits (238), Expect = 5e-22
 Identities = 53/276 (19%), Positives = 96/276 (34%), Gaps = 50/276 (18%)

Query: 51  IQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNY 110
               +T  F       Q  +L     I+      + ++  D                 N 
Sbjct: 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ----------------NT 259

Query: 111 LELNRMTSLKWIVLSNNYIK---EFVIPNRKHIEKLDLSNNLISTINLN-LNNTYYIKDL 166
                 +S++ + LS+ ++      V    K ++ L+L+ N I+ I          ++ L
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319

Query: 167 ILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN 225
            LSYN + +L ++ F  L  V  + L+ N I+ I D  F  L   L+ LDL +N LT I+
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK-LQTLDLRDNALTTIH 378

Query: 226 QCFRNLKKLKYLYLHNNNIEFIQNNT---------------------FEHLVNLKSISLS 264
                +  +  ++L  N +  +                            + +L+ + L+
Sbjct: 379 ----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434

Query: 265 GNKLTRIPD---FIHNKRLSHLNLGYNFLNELILES 297
            N+ +          N  L  L LG N L       
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE 470

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 95.6 bits (238), Expect = 6e-22
 Identities = 53/287 (18%), Positives = 99/287 (34%), Gaps = 43/287 (14%)

Query: 49  PEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQ------TLDSLPKTMETL 100
           P++ N    L +  N+I  +          +  L + S             +LP  +  L
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN-LRIL 78

Query: 101 SVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKLDLSNNLISTI 153
            + ++ +  ++      +  L  + L    + + V+ +      K + +LDLS N I ++
Sbjct: 79  DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138

Query: 154 NLN--LNNTYYIKDLILSYNQISKLNANTFRNL---NVFRLYLKFNKISEIHDFAFNGL- 207
            L+        +K +  S NQI  +  +    L    +    L  N +       +    
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 208 ----NSTLEFLDLENNRLTNI-------------NQCFRNLKKLKYLYLHNNNIEFIQNN 250
               N  LE LD+  N  T                        +       +NI+    N
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258

Query: 251 TFEHLV--NLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
           TF  L   +++ + LS   +  +    F   K L  LNL YN +N++
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 93.3 bits (232), Expect = 3e-21
 Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 21/227 (9%)

Query: 116 MTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLIS-TINLN-LNNTYYIKDLILSY 170
           + + + ++LS NYI+       P  + ++ L+L +     TI+     N   ++ L L  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 171 NQISKLNANTFRNL-NVFRLYLKFNKISE--IHDFAFNGLNSTLEFLDLENNRLTNI--N 225
           ++I  L+ + F+ L ++F L L F  +S+  + D  F  L + L  LDL  N++ ++  +
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA-LTRLDLSKNQIRSLYLH 141

Query: 226 QCFRNLKKLKYLYLHNNNIEFIQNNTFEHL--VNLKSISLSGNKLTRIPDF--------I 275
             F  L  LK +   +N I  +  +  E L    L   SL+ N L               
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201

Query: 276 HNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVMEDQFS 322
            N  L  L++  N     I  +            L  ++ +M   F 
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 90.2 bits (224), Expect = 4e-20
 Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 12/161 (7%)

Query: 141 EKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKIS-E 198
                    ++ +   LN T   + L+LS+N I  + A++F  L  +  L L        
Sbjct: 7   RIAFYRFCNLTQVPQVLNTT---ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 199 IHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIE--FIQNNTFEHL 255
           I   AF  L + L  LDL ++++  ++   F+ L  L  L L+   +    +++  F +L
Sbjct: 64  IDKEAFRNLPN-LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122

Query: 256 VNLKSISLSGNKLTRIPD---FIHNKRLSHLNLGYNFLNEL 293
             L  + LS N++  +     F     L  ++   N +  +
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 83.7 bits (207), Expect = 6e-18
 Identities = 49/229 (21%), Positives = 102/229 (44%), Gaps = 22/229 (9%)

Query: 54  KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYL 111
           K+  + + +NHI  I++        +  L++  N L T+  +P ++  + ++ N LV   
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIP-SIPDIFLSGNKLVTLP 397

Query: 112 ELNRMTSLKWIVLSNNYIKEF----VIPNRKHIEKLDLSNNLISTINLN--LNNTYYIKD 165
           ++N   +   I LS N ++       +    H++ L L+ N  S+ + +   +    ++ 
Sbjct: 398 KINL--TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455

Query: 166 LILSYNQI-----SKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENN 219
           L L  N +     ++L  + F  L ++  LYL  N ++ +    F+ L + L  L L +N
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA-LRGLSLNSN 514

Query: 220 RLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL 268
           RLT ++        L+ L +  N +     + F    +L  + ++ NK 
Sbjct: 515 RLTVLSHND-LPANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 78.7 bits (194), Expect = 3e-16
 Identities = 49/243 (20%), Positives = 96/243 (39%), Gaps = 20/243 (8%)

Query: 81  NMDSNLLQTLDSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPNR- 137
               NL Q    L  T E L ++ NY+  V       +  L+ + L + Y    +     
Sbjct: 11  YRFCNLTQVPQVLNTT-ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69

Query: 138 ---KHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISK--LNANTFRNL-NVFRLY 190
               ++  LDL ++ I  ++ +     +++ +L L +  +S   L    FRNL  + RL 
Sbjct: 70  RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129

Query: 191 LKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNL--KKLKYLYLHNNNIEFI 247
           L  N+I  ++     G  ++L+ +D  +N++  +       L  K L +  L  N++   
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189

Query: 248 QNNTFEHLVN------LKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVE 301
            +  +   +N      L+ + +SGN  T       +  +S        L   I+ +    
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249

Query: 302 NEI 304
           + I
Sbjct: 250 HNI 252

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 68.7 bits (168), Expect = 5e-13
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 10/112 (8%)

Query: 201 DFAFNGLNS------TLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEF-IQNNTF 252
            + F  L        T E L L  N +  +    F  L++L+ L L +      I    F
Sbjct: 10  FYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69

Query: 253 EHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVEN 302
            +L NL+ + L  +K+  +    F     L  L L +  L++ +L+     N
Sbjct: 70  RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  110 bits (277), Expect = 5e-28
 Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 6/136 (4%)

Query: 163 IKDLILSYNQISKLNANT-FRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNR 220
              L LS+N +S+L A      L N+  L L  N ++ I   AF  + + L +LDL +N 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN-LRYLDLSSNH 99

Query: 221 LTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHN 277
           L  +    F +L+ L+ L L+NN+I  +  N FE +  L+ + LS N+++R P       
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159

Query: 278 KRLSHLNLGYNFLNEL 293
            +L  L L     N+L
Sbjct: 160 NKLPKLMLLDLSSNKL 175

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 92.6 bits (230), Expect = 1e-21
 Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 13/162 (8%)

Query: 117 TSLKWIVLSNNYI----KEFVIPNRKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYN 171
           +    + LS+N +     E+      ++  L LS+N ++ I+         ++ L LS N
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 172 QISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN----Q 226
            +  L+   F +L  +  L L  N I  +   AF  +   L+ L L  N+++       +
Sbjct: 99  HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ-LQKLYLSQNQISRFPVELIK 157

Query: 227 CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK--SISLSGN 266
               L KL  L L +N ++ +     + L       + L  N
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.6 bits (160), Expect = 3e-12
 Identities = 45/216 (20%), Positives = 74/216 (34%), Gaps = 71/216 (32%)

Query: 35  EDNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDS 92
             N ++ L  A W+P     L +L +  NH++ I +       ++ +L++ SN L TLD 
Sbjct: 47  SHNNLSRLR-AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE 105

Query: 93  LPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLIST 152
                   S              + +L+ ++L N                          
Sbjct: 106 -----FLFS-------------DLQALEVLLLYN-------------------------- 121

Query: 153 INLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLN--S 209
                             N I  ++ N F ++  + +LYL  N+IS          N   
Sbjct: 122 ------------------NHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163

Query: 210 TLEFLDLENNRLTNI-NQCFRNLKKLK--YLYLHNN 242
            L  LDL +N+L  +     + L       LYLHNN
Sbjct: 164 KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  109 bits (274), Expect = 8e-28
 Identities = 63/254 (24%), Positives = 111/254 (43%), Gaps = 26/254 (10%)

Query: 54  KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLEL 113
            +  L +  N + QI               +  L     L    E L++++N L   L+L
Sbjct: 35  NVKELDLSGNPLSQIS--------------AADLAPFTKL----ELLNLSSNVLYETLDL 76

Query: 114 NRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQI 173
             +++L+ + L+NNY++E  +     IE L  +NN IS ++ +       K++ L+ N+I
Sbjct: 77  ESLSTLRTLDLNNNYVQE--LLVGPSIETLHAANNNISRVSCSRGQG--KKNIYLANNKI 132

Query: 174 SKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLK 232
           + L          V  L LK N+I  ++       + TLE L+L+ N + ++        
Sbjct: 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFA 191

Query: 233 KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLN 291
           KLK L L +N + F+    F+    +  ISL  NKL  I      ++ L H +L  N  +
Sbjct: 192 KLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250

Query: 292 ELILESSIVENEII 305
              L     +N+ +
Sbjct: 251 CGTLRDFFSKNQRV 264

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  102 bits (256), Expect = 3e-25
 Identities = 54/246 (21%), Positives = 102/246 (41%), Gaps = 11/246 (4%)

Query: 54  KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLEL 113
           KL  L +  N +++  +L    ++  L++++N +Q L   P  +ETL  ANN + + +  
Sbjct: 59  KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPS-IETLHAANNNI-SRVSC 116

Query: 114 NRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLN--LNNTYYIKDLIL 168
           +R    K I L+NN I          R  ++ LDL  N I T+N      ++  ++ L L
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 169 SYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCF 228
            YN I  +         +  L L  NK++ +    F      + ++ L NN+L  I +  
Sbjct: 177 QYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGP-EFQSAAG-VTWISLRNNKLVLIEKAL 233

Query: 229 RNLKKLKYLYLHNNNIEFIQN-NTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGY 287
           R  + L++  L  N        + F     +++++    K     +       +  + G 
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

Query: 288 NFLNEL 293
               +L
Sbjct: 294 YCCEDL 299

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.7 bits (231), Expect = 8e-22
 Identities = 40/214 (18%), Positives = 87/214 (40%), Gaps = 16/214 (7%)

Query: 87  LQTLDSLPKTMETLSVANNYLVNYLE--LNRMTSLKWIVLSNNYIKEF---VIPNRKHIE 141
           +  +       +   V ++ L   L        ++K + LS N + +     +     +E
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 142 KLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHD 201
            L+LS+N++    L+L +   ++ L L+ N + +L        ++  L+   N IS +  
Sbjct: 62  LLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQELLVGP----SIETLHAANNNISRVSC 116

Query: 202 FAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTF-EHLVNLK 259
               G     + + L NN++T + +       +++YL L  N I+ +           L+
Sbjct: 117 SRGQGK----KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 260 SISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
            ++L  N +  +   +   +L  L+L  N L  +
Sbjct: 173 HLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM 206

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 85.0 bits (211), Expect = 5e-19
 Identities = 37/171 (21%), Positives = 73/171 (42%), Gaps = 14/171 (8%)

Query: 133 VIPNRKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLY 190
           +  N    +   ++++ +     +   + + +K+L LS N +S+++A        +  L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 191 LKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNN 250
           L  N + E  D       STL  LDL NN +  +         ++ L+  NNNI  +  +
Sbjct: 65  LSSNVLYETLDL---ESLSTLRTLDLNNNYVQEL----LVGPSIETLHAANNNISRVSCS 117

Query: 251 TFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSI 299
             +     K+I L+ NK+T + D       R+ +L+L  N ++ +      
Sbjct: 118 RGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 28/219 (12%), Positives = 71/219 (32%), Gaps = 10/219 (4%)

Query: 54  KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP----KTMETLSVANNYLV- 108
            + TL    N+I ++   +  +    + + +N +  L  L       ++ L +  N +  
Sbjct: 100 SIETLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

Query: 109 --NYLELNRMTSLKWIVLSNNYIKEF-VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKD 165
                      +L+ + L  N+I +         ++ LDLS+N ++ +     +   +  
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTW 218

Query: 166 LILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN 225
           + L  N++  +      + N+    L+ N         F   N  ++ +  +  +     
Sbjct: 219 ISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278

Query: 226 QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264
                       +      E +     + L+ L      
Sbjct: 279 N-EEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  108 bits (271), Expect = 8e-28
 Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 13/189 (6%)

Query: 117 TSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLNL-NNTYYIKDLILSYNQ 172
            S K + LS N ++        +   ++ LDLS   I TI      +  ++  LIL+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 173 ISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI--NQCFR 229
           I  L    F  L ++ +L      ++ + +F    L  TL+ L++ +N + +    + F 
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFS 146

Query: 230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLK----SISLSGNKLTRIPDFI-HNKRLSHLN 284
           NL  L++L L +N I+ I       L  +     S+ LS N +  I        RL  L 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA 206

Query: 285 LGYNFLNEL 293
           L  N L  +
Sbjct: 207 LDTNQLKSV 215

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 98.9 bits (247), Expect = 3e-24
 Identities = 52/214 (24%), Positives = 90/214 (42%), Gaps = 23/214 (10%)

Query: 93  LPKTMETLSVANNYLVNYLE---LNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKLD 144
           LP + + L ++ N L + L          L+ + LS   I+   I +       H+  L 
Sbjct: 26  LPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLI 82

Query: 145 LSNNLISTINLNL-NNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIH-D 201
           L+ N I ++ L   +    ++ L+     ++ L      +L  +  L +  N I      
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 202 FAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKY----LYLHNNNIEFIQNNTFEHLV 256
             F+ L + LE LDL +N++ +I     R L ++      L L  N + FIQ   F+ + 
Sbjct: 143 EYFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI- 200

Query: 257 NLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
            LK ++L  N+L  +PD  F     L  + L  N
Sbjct: 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 87.3 bits (217), Expect = 4e-20
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 4/111 (3%)

Query: 188 RLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEF 246
            L L FN +  +  ++F      L+ LDL    +  I +  +++L  L  L L  N I+ 
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 247 IQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELIL 295
           +    F  L +L+ +      L  + +    H K L  LN+ +N +    L
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 82.7 bits (205), Expect = 2e-18
 Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 31/210 (14%)

Query: 80  LNMDSNLLQTL-----DSLPKTMETLSVANNYLVNYLE---LNRMTSLKWIVLSNNYIKE 131
           L++  N L+ L      S P+ ++ L ++   +   +E      ++ L  ++L+ N I+ 
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 132 FVIPNR-----KHIEKLDLSNNLISTINL----NLNNTYYIKDLILSYNQISKL-NANTF 181
             +          ++KL      ++++      +L      K+L +++N I        F
Sbjct: 91  --LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL---KELNVAHNLIQSFKLPEYF 145

Query: 182 RNL-NVFRLYLKFNKISEIHDFAFNGLNS---TLEFLDLENNRLTNI-NQCFRNLKKLKY 236
            NL N+  L L  NKI  I+      L+        LDL  N +  I    F+ ++ LK 
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKE 204

Query: 237 LYLHNNNIEFIQNNTFEHLVNLKSISLSGN 266
           L L  N ++ + +  F+ L +L+ I L  N
Sbjct: 205 LALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.5 bits (181), Expect = 3e-15
 Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 24/203 (11%)

Query: 36  DNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTL--- 90
            N +  L + ++      +L  L +    I  IE+        +  L +  N +Q+L   
Sbjct: 37  FNPLRHLGSYSFFS--FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94

Query: 91  --DSLPKTMETLSVANNYLVNYLE---LNRMTSLKWIVLSNNYIKEFVIP----NRKHIE 141
               L    + L      L + LE   +  + +LK + +++N I+ F +P    N  ++E
Sbjct: 95  AFSGLSSL-QKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 142 KLDLSNNLISTINLNL-----NNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKI 196
            LDLS+N I +I                 L LS N ++ +    F+ + +  L L  N++
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQL 212

Query: 197 SEIHDFAFNGLNSTLEFLDLENN 219
             + D  F+ L S L+ + L  N
Sbjct: 213 KSVPDGIFDRLTS-LQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 3/91 (3%)

Query: 206 GLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264
            L  + + LDL  N L ++ +  F +  +L+ L L    I+ I++  ++ L +L ++ L+
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 265 GNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
           GN +  +    F     L  L      L  L
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  112 bits (281), Expect = 1e-27
 Identities = 47/256 (18%), Positives = 105/256 (41%), Gaps = 13/256 (5%)

Query: 54  KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP-KTMETLSVANNYLVNYLE 112
            +++  +    I ++++ +       L + +       +L  K+++ L+  +N   N   
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342

Query: 113 LNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKLDLSNNLISTINLNLNNTYYIKDLI 167
              + SL+++ LS N +      ++       ++ LDLS N + T++ N      ++ L 
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402

Query: 168 LSYNQISKL-NANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN-- 223
             ++ + ++   + F +L N+  L +         +  FNGL+S LE L +  N      
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENF 461

Query: 224 INQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLS 281
           +   F  L+ L +L L    +E +    F  L +L+ +++S N    +    +     L 
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521

Query: 282 HLNLGYNFLNELILES 297
            L+   N +     + 
Sbjct: 522 VLDYSLNHIMTSKKQE 537

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 97.8 bits (244), Expect = 8e-23
 Identities = 57/269 (21%), Positives = 102/269 (37%), Gaps = 29/269 (10%)

Query: 54  KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLP----KTMETLSVANNYL 107
           +L  L +    I  IE+        +  L +  N +Q+L         +++ L      L
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

Query: 108 VNYLE--LNRMTSLKWIVLSNNYIKEFVIP----NRKHIEKLDLSNNLISTIN----LNL 157
            +     +  + +LK + +++N I+ F +P    N  ++E LDLS+N I +I       L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 158 NN-TYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKIS-EIHDFAFNGLNSTLEFLD 215
           +        L LS N ++ +    F+ + + +L L+ N  S  +      GL + LE   
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL-AGLEVHR 231

Query: 216 LENNRLTNINQC-------FRNLKKLKYLYLHNNNIEFIQNN---TFEHLVNLKSISLSG 265
           L      N              L  L         +++  ++    F  L N+ S SL  
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 266 NKLTRIPDFIHNKRLSHLNLGYNFLNELI 294
             + R+ DF +N    HL L      +  
Sbjct: 292 VTIERVKDFSYNFGWQHLELVNCKFGQFP 320

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 93.9 bits (234), Expect = 2e-21
 Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 13/196 (6%)

Query: 116 MTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYN 171
             S K + LS N ++        +   ++ LDLS   I TI      +  ++  LIL+ N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 172 QISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN--QCF 228
            I  L    F  L ++ +L      ++ + +F    L + L+ L++ +N + +    + F
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT-LKELNVAHNLIQSFKLPEYF 145

Query: 229 RNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK----SISLSGNKLTRIPDFI-HNKRLSHL 283
            NL  L++L L +N I+ I       L  +     S+ LS N +  I        RL  L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205

Query: 284 NLGYNFLNELILESSI 299
            L  NF +  ++++ I
Sbjct: 206 TLRNNFDSLNVMKTCI 221

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 91.6 bits (228), Expect = 1e-20
 Identities = 49/266 (18%), Positives = 105/266 (39%), Gaps = 22/266 (8%)

Query: 50  EIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTM----------ET 99
           E+   +   F  E ++ +  + +    +  L ++   L  LD     +           +
Sbjct: 228 EVHRLVLGEFRNEGNLEKF-DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286

Query: 100 LSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNN 159
            S+ +  +    + +     + + L N    +F     K +++L  ++N        ++ 
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346

Query: 160 TYYIKDLILSYNQISKLN--ANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDL 216
              ++ L LS N +S     + +     ++  L L FN +  +    F GL   LE LD 
Sbjct: 347 P-SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQ-LEHLDF 403

Query: 217 ENNRLTNI--NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTR--IP 272
           +++ L  +     F +L+ L YL + + +     N  F  L +L+ + ++GN      +P
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 273 DFIHN-KRLSHLNLGYNFLNELILES 297
           D     + L+ L+L    L +L   +
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTA 489

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 88.2 bits (219), Expect = 1e-19
 Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 8/161 (4%)

Query: 142 KLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIH 200
                      I  NL  +   K+L LS+N +  L + +F +   +  L L   +I  I 
Sbjct: 11  TYQCMELNFYKIPDNLPFS--TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 201 DFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK 259
           D A+  L+  L  L L  N + ++    F  L  L+ L     N+  ++N    HL  LK
Sbjct: 69  DGAYQSLSH-LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 260 SISLSGNKLTRIP---DFIHNKRLSHLNLGYNFLNELILES 297
            ++++ N +        F +   L HL+L  N +  +    
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.5 bits (194), Expect = 3e-16
 Identities = 51/296 (17%), Positives = 104/296 (35%), Gaps = 53/296 (17%)

Query: 54  KLTTLFIGENHIHQI---ENLNGFRSILWLNMDSNLLQT--------LDSLPKTMETLSV 102
            L  L +  N I      E  +   ++  L++ SN +Q+        L  +P    +L +
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 103 ANNYLVNY-LELNRMTSLKWIVLSNNYIKEFVIPNR----KHIEKLDLSNNLISTIN--- 154
           + N +        +   L  + L NN+    V+         +E   L            
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 155 -LNLNNTYYIKDLILSYNQISKLNA------NTFRNL-NVFRLYLKFNKISEIHDFAFNG 206
             + +    + +L +   +++ L+       + F  L NV    L    I  + DF++N 
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN- 303

Query: 207 LNSTLEFLDLENNRLT--------------------NINQCFRNLKKLKYLYLHNNNIEF 246
                + L+L N +                             +L  L++L L  N + F
Sbjct: 304 --FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 361

Query: 247 IQ--NNTFEHLVNLKSISLSGNKLTRIP-DFIHNKRLSHLNLGYNFLNELILESSI 299
               + +     +LK + LS N +  +  +F+  ++L HL+  ++ L ++   S  
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 74.7 bits (184), Expect = 5e-15
 Identities = 38/227 (16%), Positives = 87/227 (38%), Gaps = 17/227 (7%)

Query: 36  DNQIAELETANWSPEIQNKLTTLFIGENHIHQI-ENLNGFRSILWLNMDSNLLQTLDSLP 94
            N ++     + S      L  L +  N +  +  N  G   +  L+   + L+ +    
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

Query: 95  -----KTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPNR----KHIEKL 143
                + +  L +++ +         N ++SL+ + ++ N  +E  +P+     +++  L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 144 DLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHD 201
           DLS   +  ++    N+   ++ L +S+N    L+   ++ L ++  L    N I     
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

Query: 202 FAFNGLNSTLEFLDLENNRLT---NINQCFRNLKKLKYLYLHNNNIE 245
                  S+L FL+L  N            + +K  + L +    +E
Sbjct: 536 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 582

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  108 bits (271), Expect = 4e-27
 Identities = 48/245 (19%), Positives = 107/245 (43%), Gaps = 12/245 (4%)

Query: 53  NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTMETLSVANNYLVNY 110
             +T L +    +  I+ +    ++ +LN++ N +  +  L     +  L +  N + + 
Sbjct: 44  ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI 103

Query: 111 LELNRMTSLKWIVLSNNYIKEF-VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILS 169
             L  +T+L+ + L+ + I +   + N   +  L+L  N   +    L+N   +  L ++
Sbjct: 104 SALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVT 163

Query: 170 YNQISKLNA-NTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCF 228
            +++  +       +L    L L +N+I +I       L S L +     N++T+I    
Sbjct: 164 ESKVKDVTPIANLTDLYS--LSLNYNQIEDIS--PLASLTS-LHYFTAYVNQITDI-TPV 217

Query: 229 RNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYN 288
            N+ +L  L + NN I  +      +L  L  + +  N+++ I       +L  LN+G N
Sbjct: 218 ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN 275

Query: 289 FLNEL 293
            ++++
Sbjct: 276 QISDI 280

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  108 bits (271), Expect = 4e-27
 Identities = 51/245 (20%), Positives = 108/245 (44%), Gaps = 14/245 (5%)

Query: 54  KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQT----LDSLPKTMETLSVANNYLVN 109
            L  L++ E++I  I  L     +  LN+ +N   +    L ++   +  L+V  + + +
Sbjct: 111 NLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTG-LNYLTVTESKVKD 169

Query: 110 YLELNRMTSLKWIVLSNNYIKEF-VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLIL 168
              +  +T L  + L+ N I++   + +   +       N I+ I   + N   +  L +
Sbjct: 170 VTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT-PVANMTRLNSLKI 228

Query: 169 SYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQC 227
             N+I+ L+     NL  +  L +  N+IS+I+        + L+ L++ +N++++I   
Sbjct: 229 GNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDL---TKLKMLNVGSNQISDI-SV 282

Query: 228 FRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGY 287
             NL +L  L+L+NN +          L NL ++ LS N +T I       ++   +   
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFAN 342

Query: 288 NFLNE 292
             + +
Sbjct: 343 QVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  107 bits (270), Expect = 6e-27
 Identities = 51/250 (20%), Positives = 108/250 (43%), Gaps = 14/250 (5%)

Query: 53  NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTMETLSVANNYLVNY 110
             L  L +  N I  I  L+    +  L + +N +  + +L     +  L +  + + + 
Sbjct: 66  TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI 125

Query: 111 LELNRMTSLKWIVLSNNYIKEFV--IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLIL 168
             L  +T +  + L  N+    +  + N   +  L ++ + +  +   + N   +  L L
Sbjct: 126 SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT-PIANLTDLYSLSL 184

Query: 169 SYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQC 227
           +YNQI  ++     +L ++       N+I++I       +   L  L + NN++T+++  
Sbjct: 185 NYNQIEDISP--LASLTSLHYFTAYVNQITDIT--PVANMTR-LNSLKIGNNKITDLS-P 238

Query: 228 FRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGY 287
             NL +L +L +  N I  I  N  + L  LK +++  N+++ I    +  +L+ L L  
Sbjct: 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNN 296

Query: 288 NFLNELILES 297
           N L    +E 
Sbjct: 297 NQLGNEDMEV 306

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  103 bits (259), Expect = 2e-25
 Identities = 51/244 (20%), Positives = 103/244 (42%), Gaps = 12/244 (4%)

Query: 55  LTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNYLE 112
             TL      I+QI         +   +    +  + +    +++  L VA   + +   
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG 61

Query: 113 LNRMTSLKWIVLSNNYIKEF-VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYN 171
           +  +T+L+++ L+ N I +   + N   +  L +  N I+ I+  L N   +++L L+ +
Sbjct: 62  IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNED 120

Query: 172 QISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRN 230
            IS ++     NL  ++ L L  N          + +   L +L +  +++ ++     N
Sbjct: 121 NISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTG-LNYLTVTESKVKDVTP-IAN 175

Query: 231 LKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFL 290
           L  L  L L+ N IE I       L +L   +   N++T I    +  RL+ L +G N +
Sbjct: 176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKI 233

Query: 291 NELI 294
            +L 
Sbjct: 234 TDLS 237

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  109 bits (274), Expect = 1e-26
 Identities = 47/291 (16%), Positives = 96/291 (32%), Gaps = 31/291 (10%)

Query: 54  KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDS----LPKTMETLSVANNYLV- 108
           KL  L    N +  +E       +  L +D N ++ +          +E L  ++N L  
Sbjct: 574 KLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY 633

Query: 109 --NYLELNRMTSLKWIVLSNNYIKEFV--------IPNRKHIEKLDLSNNLISTINLN-L 157
             N      +  +  +  S N I                 +   + LS N I        
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693

Query: 158 NNTYYIKDLILSYNQISKLNANTFRNLNVF--------RLYLKFNKISEIHDFAFNGLNS 209
                I  +ILS N ++ +  N+ +  +           + L+FNK++ + D        
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753

Query: 210 TLEFLDLENNRLTNINQCFRNLKKLKYLYL------HNNNIEFIQNNTFEHLVNLKSISL 263
            L  +D+  N  ++      N  +LK   +        N I            +L  + +
Sbjct: 754 YLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

Query: 264 SGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSN 314
             N + ++ + +   +L  L++  N    + + S     E     +L++  
Sbjct: 814 GSNDIRKVDEKL-TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 91.5 bits (227), Expect = 2e-20
 Identities = 46/285 (16%), Positives = 96/285 (33%), Gaps = 22/285 (7%)

Query: 33  ENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQI-ENLNGFRSILWLNMDSNLLQTLD 91
           ++  N+  E++       I  K T +    N I  I + +     +  +   ++     +
Sbjct: 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDN 464

Query: 92  SLPKTMETLSVANNYLVNY-LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSN 147
                 +  S       N  L  + +  L  + L N      +   + +   ++ L+++ 
Sbjct: 465 IAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524

Query: 148 NLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGL 207
           N   +      +   + D   +  +I                Y+ +N + E    A    
Sbjct: 525 NRGISAAQLKADWTRLADDEDTGPKIQIF-------------YMGYNNLEEFPASASLQK 571

Query: 208 NSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNK 267
              L  LD  +N++ ++   F    KL  L L  N IE I  +       ++ +  S NK
Sbjct: 572 MVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK 630

Query: 268 LTRIPDFIHNKRLSHL---NLGYNFLNELILESSIVENEIIDQNM 309
           L  IP+  + K +  +   +  YN +       S   ++    N 
Sbjct: 631 LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 88.0 bits (218), Expect = 2e-19
 Identities = 40/276 (14%), Positives = 90/276 (32%), Gaps = 35/276 (12%)

Query: 48  SPEIQN--KLTTLFIGENHIHQIENLNGFRSI-------LWLNMDSNLLQTLDSLPKTME 98
              I    +L  L  G +       L G   +           +  +  +      + + 
Sbjct: 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399

Query: 99  TLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEF---------VIPNRKHIEKLDLSNNL 149
              +  + +    E+  +     I L +  I             I     ++ +  +N+ 
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP 459

Query: 150 ISTINLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLN 208
            +  N+ ++     +D    Y +  +    ++ NL ++  + L               L 
Sbjct: 460 FTYDNIAVDW----EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515

Query: 209 STLEFLDLENNRLT----------NINQCFRNLKKLKYLYLHNNNIEFI-QNNTFEHLVN 257
             L+ L++  NR             +        K++  Y+  NN+E    + + + +V 
Sbjct: 516 E-LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK 574

Query: 258 LKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
           L  +    NK+  +  F  N +L+ L L YN + E+
Sbjct: 575 LGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEI 610

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.9 bits (184), Expect = 5e-15
 Identities = 37/253 (14%), Positives = 86/253 (33%), Gaps = 35/253 (13%)

Query: 53  NKLTTLFIGENHIHQIENLNGFRS---ILWLNMDSNLLQTL---------DSLPKTMETL 100
           +++  L    N +  I N+   +S   +  ++   N + +          D       T+
Sbjct: 619 DQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678

Query: 101 SVANNYLVN--YLELNRMTSLKWIVLSNNYIKEF----------VIPNRKHIEKLDLSNN 148
           +++ N +           + +  I+LSNN +                N   +  +DL  N
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738

Query: 149 LISTI--NLNLNNTYYIKDLILSYNQISKL-----NANTFRNLNVFR-LYLKFNKISEIH 200
            ++++  +       Y+ ++ +SYN  S       N++  +   +      + N+I    
Sbjct: 739 KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798

Query: 201 DFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKS 260
                   S L  L + +N +  +++      +L  L + +N    I   +    +    
Sbjct: 799 PTGITTCPS-LIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGM 855

Query: 261 ISLSGNKLTRIPD 273
             L  +K   I  
Sbjct: 856 YVLLYDKTQDIRG 868

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.4 bits (175), Expect = 6e-14
 Identities = 37/246 (15%), Positives = 79/246 (32%), Gaps = 46/246 (18%)

Query: 98  ETLSVANNYLVNYL--ELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINL 155
             LS+A       +   + ++T LK +    +                D+S      I +
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385

Query: 156 NLNNTY-----------YIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAF 204
           +    +            ++D I    ++  +  ++  +L   ++    N+I+ I   A 
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK-AI 444

Query: 205 NGLNSTLEFLDLENNRLTNINQC--------------------FRNLKKLKYLYLHNNNI 244
             L   L+ +   N+  T  N                      + NLK L  + L+N   
Sbjct: 445 QRLTK-LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 245 EFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHN-----------KRLSHLNLGYNFLNEL 293
                +    L  L+S++++ N+         +            ++    +GYN L E 
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563

Query: 294 ILESSI 299
              +S+
Sbjct: 564 PASASL 569

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.6 bits (126), Expect = 8e-08
 Identities = 17/164 (10%), Positives = 46/164 (28%), Gaps = 10/164 (6%)

Query: 156 NLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFL 214
           +L+N   +  L L+         +    L  +  L    +  +       +   +     
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 215 DLENNRLTNINQCF-------RNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNK 267
           + ++    +  + F            L+     N  ++ I+ ++   L +   I    N+
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT-QIGNLTNR 436

Query: 268 LTRIPDFIHN-KRLSHLNLGYNFLNELILESSIVENEIIDQNML 310
           +T I   I    +L  +    +      +     +         
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 14/111 (12%), Positives = 33/111 (29%), Gaps = 4/111 (3%)

Query: 208 NSTLEFLDLENNRLTN-INQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN 266
           N  +  L L        +      L +LK L    ++         +  +         +
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH 381

Query: 267 KLTRIPD---FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSN 314
           ++          +++RL+  +L  + +N       I ++  I        N
Sbjct: 382 RIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN 432

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  105 bits (264), Expect = 6e-26
 Identities = 52/296 (17%), Positives = 110/296 (37%), Gaps = 35/296 (11%)

Query: 28  LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSN 85
             +  +   +   +     +     N    +    + + ++    L+ FR +  LN++  
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 79

Query: 86  LLQTLD----SLPKTMETLSVANNYLVNYLE--LNRMTSLKWIVLSNNYIKEF---VIPN 136
            ++ +D    +   T++ L +  N +          +  L  +VL  N +      +  N
Sbjct: 80  QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139

Query: 137 RKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL----------- 184
              +  L +SNN +  I  +    T  +++L LS N+++ ++ +   +L           
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS 199

Query: 185 ------NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLY 238
                  V  L    N I+ +       L      L L++N LT+      N   L  + 
Sbjct: 200 TLAIPIAVEELDASHNSINVVRGPVNVEL----TILKLQHNNLTDTAW-LLNYPGLVEVD 254

Query: 239 LHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHN-KRLSHLNLGYNFLNEL 293
           L  N +E I  + F  +  L+ + +S N+L  +  +      L  L+L +N L  +
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV 310

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  100 bits (250), Expect = 5e-24
 Identities = 59/257 (22%), Positives = 118/257 (45%), Gaps = 15/257 (5%)

Query: 36  DNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLD-S 92
            N ++ L    +      KLTTL +  N++ +IE+       S+  L + SN L  +D S
Sbjct: 126 RNDLSSLPRGIFHN--TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS 183

Query: 93  LPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLIST 152
           L  ++   +V+ N L     L    +++ +  S+N I     P    +  L L +N ++ 
Sbjct: 184 LIPSLFHANVSYNLLST---LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD 240

Query: 153 INLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTL 211
               L N   + ++ LSYN++ K+  + F  +  + RLY+  N++  + +     + + L
Sbjct: 241 TA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPT-L 297

Query: 212 EFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRI 271
           + LDL +N L ++ +      +L+ LYL +N+I  ++ +T      LK+++LS N     
Sbjct: 298 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHH---TLKNLTLSHNDWDCN 354

Query: 272 PDFIHNKRLSHLNLGYN 288
                 + ++   +   
Sbjct: 355 SLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.8 bits (174), Expect = 5e-14
 Identities = 38/206 (18%), Positives = 77/206 (37%), Gaps = 14/206 (6%)

Query: 54  KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTL-DSLPKTMETLSVANNYLVNYLE 112
            L    +  N +  +       ++  L+   N +  +   +   +  L + +N L +   
Sbjct: 187 SLFHANVSYNLLSTLAIP---IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAW 243

Query: 113 LNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILS 169
           L     L  + LS N +++         + +E+L +SNN +  +NL       +K L LS
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 303

Query: 170 YNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFR 229
           +N +  +  N  +   +  LYL  N I  +     + L +    L L +N         R
Sbjct: 304 HNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKN----LTLSHNDWDCN--SLR 357

Query: 230 NL-KKLKYLYLHNNNIEFIQNNTFEH 254
            L + +    + + +     +   EH
Sbjct: 358 ALFRNVARPAVDDADQHCKIDYQLEH 383

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  105 bits (264), Expect = 1e-25
 Identities = 63/262 (24%), Positives = 118/262 (45%), Gaps = 16/262 (6%)

Query: 53  NKLTTLFIGENHIHQI--ENLNGFRSILWLNMDSNLLQTLD-----SLPKTMETLSVANN 105
           N+     + ++ + Q          ++  L++  N L  +         K +E L++++N
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSN 68

Query: 106 YLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKD 165
            L   L+L  +++L+ + L+NNY++E  +     IE L  +NN IS ++ +       K+
Sbjct: 69  VLYETLDLESLSTLRTLDLNNNYVQE--LLVGPSIETLHAANNNISRVSCSRGQG--KKN 124

Query: 166 LILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI 224
           + L+ N+I+ L          V  L LK N+I  ++       + TLE L+L+ N + ++
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184

Query: 225 NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHL 283
                   KLK L L +N + F+    F+    +  ISL  NKL  I      ++ L H 
Sbjct: 185 KGQV-VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF 242

Query: 284 NLGYNFLNELILESSIVENEII 305
           +L  N  +   L     +N+ +
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRV 264

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  100 bits (251), Expect = 7e-24
 Identities = 54/246 (21%), Positives = 102/246 (41%), Gaps = 11/246 (4%)

Query: 54  KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLEL 113
           KL  L +  N +++  +L    ++  L++++N +Q L   P  +ETL  ANN + + +  
Sbjct: 59  KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPS-IETLHAANNNI-SRVSC 116

Query: 114 NRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLN--LNNTYYIKDLIL 168
           +R    K I L+NN I          R  ++ LDL  N I T+N      ++  ++ L L
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 169 SYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCF 228
            YN I  +         +  L L  NK++ +    F      + ++ L NN+L  I +  
Sbjct: 177 QYNFIYDVKGQVVFA-KLKTLDLSSNKLAFMGP-EFQSAAG-VTWISLRNNKLVLIEKAL 233

Query: 229 RNLKKLKYLYLHNNNIEFIQN-NTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGY 287
           R  + L++  L  N        + F     +++++    K     +       +  + G 
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

Query: 288 NFLNEL 293
               +L
Sbjct: 294 YCCEDL 299

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 79.1 bits (195), Expect = 1e-16
 Identities = 39/186 (20%), Positives = 84/186 (45%), Gaps = 18/186 (9%)

Query: 116 MTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYN 171
               K   ++++ +K+    +  +  ++++LDLS N +S I+   L     ++ L LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 172 QISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRN 230
            + +       +L  +  L L  N + E+       +  ++E L   NN ++ ++     
Sbjct: 69  VLYETLD--LESLSTLRTLDLNNNYVQEL------LVGPSIETLHAANNNISRVS--CSR 118

Query: 231 LKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIP--DFIHN-KRLSHLNLGY 287
            +  K +YL NN I  +++        ++ + L  N++  +   +   +   L HLNL Y
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 288 NFLNEL 293
           NF+ ++
Sbjct: 179 NFIYDV 184

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.7 bits (194), Expect = 2e-16
 Identities = 37/171 (21%), Positives = 73/171 (42%), Gaps = 14/171 (8%)

Query: 133 VIPNRKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLY 190
           +  N    +   ++++ +     +   + + +K+L LS N +S+++A        +  L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 191 LKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNN 250
           L  N + E  D       STL  LDL NN +  +         ++ L+  NNNI  +  +
Sbjct: 65  LSSNVLYETLDL---ESLSTLRTLDLNNNYVQEL----LVGPSIETLHAANNNISRVSCS 117

Query: 251 TFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSI 299
             +     K+I L+ NK+T + D       R+ +L+L  N ++ +      
Sbjct: 118 RGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 73.7 bits (181), Expect = 1e-14
 Identities = 33/295 (11%), Positives = 82/295 (27%), Gaps = 45/295 (15%)

Query: 36  DNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLD-- 91
           +N I+ +     S         +++  N I  + +        + +L++  N + T++  
Sbjct: 108 NNNISRV-----SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 92  ---SLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEF--VIPNRKHIEKLDLS 146
              +   T+E L++  N++ +         LK + LS+N +        +   +  + L 
Sbjct: 163 ELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222

Query: 147 NNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNG 206
           NN +  I   L  +  ++   L  N         F + N     +    + ++       
Sbjct: 223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

Query: 207 L----------------------------NSTLEFLDLENNRLTNINQCFRNLKKLKYLY 238
                                              L  + +    +     N  + + + 
Sbjct: 283 CTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREID 342

Query: 239 LHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
                   + +          ++      L        N R +H  L       +
Sbjct: 343 ALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVS---NGRRAHAELDGTLQQAV 394

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.5 bits (126), Expect = 8e-08
 Identities = 29/266 (10%), Positives = 75/266 (28%), Gaps = 18/266 (6%)

Query: 54  KLTTLFIGENHIHQI-ENLNGFRSILWLNMDSNLLQTLD---SLPKTMETLSVANNYLV- 108
           KL TL +  N +  +         + W+++ +N L  ++      + +E   +  N    
Sbjct: 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC 251

Query: 109 NYLELNRMTSLKWIVLSNNYIKE---FVIPNRKHIEKLDLSNNLISTI------NLNLNN 159
             L      + +   ++   +K+                        +       L    
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALK 311

Query: 160 TYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENN 219
                 L    ++  +L            +     +   + D       +    L+ +  
Sbjct: 312 RKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQA-KITLEQKKK 370

Query: 220 RLTNINQC-FRNLKKLKYLYLHNNNIEFIQNNTFE--HLVNLKSISLSGNKLTRIPDFIH 276
            L        R   +L            +Q+ T E   L  L++I     ++      + 
Sbjct: 371 ALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQ 430

Query: 277 NKRLSHLNLGYNFLNELILESSIVEN 302
           N  +   ++  +   +L  E++ ++ 
Sbjct: 431 NNAIRDWDMYQHKETQLAEENARLKK 456

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  101 bits (253), Expect = 1e-25
 Identities = 41/130 (31%), Positives = 72/130 (55%), Gaps = 6/130 (4%)

Query: 164 KDLILSYNQISKLNAN-TFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRL 221
            +L L+ N+ + L A   F+ L  + ++    NKI++I + AF G +  +  + L +NRL
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG-VNEILLTSNRL 93

Query: 222 TNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNK 278
            N+ ++ F+ L+ LK L L +N I  + N++F  L +++ +SL  N++T +    F    
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153

Query: 279 RLSHLNLGYN 288
            LS LNL  N
Sbjct: 154 SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 79.7 bits (197), Expect = 8e-18
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 5/110 (4%)

Query: 185 NVFRLYLKFNKISEIHDFA-FNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNN 242
               L L  N+ + +     F  L   L  ++  NN++T+I +  F     +  + L +N
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQ-LRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 243 NIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFL 290
            +E +Q+  F+ L +LK++ L  N++T + +  FI    +  L+L  N +
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 74.3 bits (183), Expect = 7e-16
 Identities = 31/129 (24%), Positives = 61/129 (47%), Gaps = 14/129 (10%)

Query: 124 LSNNYIKEF----VIPNRKHIEKLDLSNNLISTINLN----LNNTYYIKDLILSYNQISK 175
           L+NN         +      + K++ SNN I+ I        +    + +++L+ N++  
Sbjct: 39  LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG---VNEILLTSNRLEN 95

Query: 176 LNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKK 233
           +    F+ L ++  L L+ N+I+ + + +F GL+S +  L L +N++T +    F  L  
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS-VRLLSLYDNQITTVAPGAFDTLHS 154

Query: 234 LKYLYLHNN 242
           L  L L  N
Sbjct: 155 LSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 68.5 bits (168), Expect = 8e-14
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 206 GLNSTLEFLDLENNRLTNI--NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISL 263
            +      L L NN  T +     F+ L +L+ +   NN I  I+   FE    +  I L
Sbjct: 29  HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88

Query: 264 SGNKLTRIP--DFIHNKRLSHLNLGYNFLNEL 293
           + N+L  +    F   + L  L L  N +  +
Sbjct: 89  TSNRLENVQHKMFKGLESLKTLMLRSNRITCV 120

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  106 bits (266), Expect = 1e-25
 Identities = 61/268 (22%), Positives = 115/268 (42%), Gaps = 22/268 (8%)

Query: 54  KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLD----SLPKTMETLSVANNYL 107
           +LT+L +G N I ++E         +  LN+  N L  L     +    +  L + +N +
Sbjct: 50  QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109

Query: 108 --VNYLELNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTIN---LNLNN 159
             +      +  +L  + LS+N +           +++++L LSNN I  +    L++  
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169

Query: 160 TYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIH--DFAFNGLNSTLEFLDL 216
              +K L LS NQI + +   F  +  +F L+L   ++             N+++  L L
Sbjct: 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229

Query: 217 ENNRLTNINQ-CFRNLK--KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD 273
            N++L+  +   F  LK   L  L L  NN+  + N++F  L  L+   L  N +  +  
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289

Query: 274 --FIHNKRLSHLNLGYNFLNELILESSI 299
                   + +LNL  +F  + I  +S+
Sbjct: 290 HSLHGLFNVRYLNLKRSFTKQSISLASL 317

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  105 bits (263), Expect = 4e-25
 Identities = 47/231 (20%), Positives = 87/231 (37%), Gaps = 17/231 (7%)

Query: 80  LNMDSNLLQTL-DSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIK---EFV 133
            +     L  + D LP  +  L++ +N L  +      R + L  + +  N I      +
Sbjct: 9   ADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL 68

Query: 134 IPNRKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYL 191
                 ++ L+L +N +S ++         + +L L  N I K+  N F    N+  L L
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128

Query: 192 KFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ---CFRNLKKLKYLYLHNNNIEFIQ 248
             N +S         L + L+ L L NN++  +            LK L L +N I+   
Sbjct: 129 SHNGLSSTKLGTQVQLEN-LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS 187

Query: 249 NNTFEHLVNLKSISLSGNKLTRIPD-----FIHNKRLSHLNLGYNFLNELI 294
              F  +  L  + L+  +L           + N  + +L+L  + L+   
Sbjct: 188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  104 bits (262), Expect = 5e-25
 Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 8/188 (4%)

Query: 117 TSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISK 175
            S +    S+  + +       +I  L+L++N +  +   N      +  L + +N ISK
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 176 LNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKK 233
           L     + L  +  L L+ N++S++ D  F    + L  L L +N +  I N  F   K 
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN-LTELHLMSNSIQKIKNNPFVKQKN 122

Query: 234 LKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD----FIHNKRLSHLNLGYNF 289
           L  L L +N +   +  T   L NL+ + LS NK+  +         N  L  L L  N 
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

Query: 290 LNELILES 297
           + E     
Sbjct: 183 IKEFSPGC 190

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  103 bits (259), Expect = 1e-24
 Identities = 70/284 (24%), Positives = 122/284 (42%), Gaps = 41/284 (14%)

Query: 54  KLTTLFIGENHIHQIEN-----------LNGFRSILWLNMDSNLLQTLDSLP----KTME 98
           +L   F+  N+I  + +           LN  RS    ++    L  +D       K +E
Sbjct: 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332

Query: 99  TLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPNR-------KHIEKLDLSNNL 149
            L++ +N +  +       + +LK++ LSN++     + N          +  L+L+ N 
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392

Query: 150 ISTINLN-LNNTYYIKDLILSYNQISK-LNANTFRNL-NVFRLYLKFNKISEIHDFAFNG 206
           IS I  +  +   +++ L L  N+I + L    +R L N+F +YL +NK  ++   +F  
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452

Query: 207 LNSTLEFLDLENNRLTNINQC---FRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISL 263
           + S L+ L L    L N++     F+ L+ L  L L NNNI  I ++  E L  L+ + L
Sbjct: 453 VPS-LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDL 511

Query: 264 SGNKLTRIPD----------FIHNKRLSHLNLGYNFLNELILES 297
             N L R+                  L  LNL  N  +E+ +E 
Sbjct: 512 QHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  103 bits (258), Expect = 1e-24
 Identities = 57/306 (18%), Positives = 122/306 (39%), Gaps = 33/306 (10%)

Query: 36  DNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSL 93
           ++Q++      +       LT L +  N+++ + N        + +  ++ N +Q L S 
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

Query: 94  P----KTMETLSVANNYLVNYLELNR-----------MTSLKWIVLSNNYIKE---FVIP 135
                  +  L++  ++    + L             +  L+ + + +N I      +  
Sbjct: 291 SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350

Query: 136 NRKHIEKLDLSNNLISTINLNLNN-----TYYIKDLILSYNQISKLNANTFRNL-NVFRL 189
              +++ L LSN+  S   L            +  L L+ N+ISK+ ++ F  L ++  L
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410

Query: 190 YLKFNKIS-EIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFI 247
            L  N+I  E+    + GL + +  + L  N+   +    F  +  L+ L L    ++ +
Sbjct: 411 DLGLNEIGQELTGQEWRGLEN-IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 248 QN--NTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVENE 303
            +  + F+ L NL  + LS N +  I D      ++L  L+L +N L  L   ++     
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 304 IIDQNM 309
              + +
Sbjct: 530 YFLKGL 535

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  103 bits (258), Expect = 2e-24
 Identities = 60/270 (22%), Positives = 110/270 (40%), Gaps = 26/270 (9%)

Query: 49  PEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLD-----SLPKTMETLS 101
            ++   +T L +  N + ++       +  +  L++  N +  L+      LP  ++ L+
Sbjct: 21  DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPM-LKVLN 79

Query: 102 VANNYL--VNYLELNRMTSLKWIVLSNNYIK---EFVIPNRKHIEKLDLSNNLISTINLN 156
           + +N L  ++       T+L  + L +N I+         +K++  LDLS+N +S+  L 
Sbjct: 80  LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

Query: 157 -LNNTYYIKDLILSYNQISKLNANTFRNLNVFRL---YLKFNKISEIHDFAFNGLNSTLE 212
                  +++L+LS N+I  L +          L    L  N+I E     F+ +   L 
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR-LF 198

Query: 213 FLDLENNRLTNIN----QCFRNLKKLKYLYLHNNNIEFIQNNTFEHL--VNLKSISLSGN 266
            L L N +L                ++ L L N+ +    N TF  L   NL  + LS N
Sbjct: 199 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258

Query: 267 KLTRIPD--FIHNKRLSHLNLGYNFLNELI 294
            L  + +  F    +L +  L YN +  L 
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  102 bits (255), Expect = 3e-24
 Identities = 62/275 (22%), Positives = 111/275 (40%), Gaps = 32/275 (11%)

Query: 54  KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQ-------TLDSLPKTM-ETLSVA 103
            L  L + +N I  I++    G  ++ +L++ ++          T  SL  +    L++ 
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389

Query: 104 NNYLVNYLE--LNRMTSLKWIVLSNNYIKEFV----IPNRKHIEKLDLSNNLISTINLN- 156
            N +        + +  L+ + L  N I + +        ++I ++ LS N    +  N 
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449

Query: 157 LNNTYYIKDLILSYNQISKLN--ANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEF 213
                 ++ L+L    +  ++   + F+ L N+  L L  N I+ I+D    GL   LE 
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK-LEI 508

Query: 214 LDLENNRLTNI---------NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264
           LDL++N L  +             + L  L  L L +N  + I    F+ L  LK I L 
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568

Query: 265 GNKLTRIPD--FIHNKRLSHLNLGYNFLNELILES 297
            N L  +P   F +   L  LNL  N +  +  + 
Sbjct: 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  102 bits (255), Expect = 4e-24
 Identities = 56/283 (19%), Positives = 103/283 (36%), Gaps = 34/283 (12%)

Query: 54  KLTTLFIGENHIH-----QIENLNGFRSILWLNMDSNLLQTLDSL------PKTMETLSV 102
           +L  LF+    +      ++       SI  L++ ++ L T  +          +  L +
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 103 ANNYL--VNYLELNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLIST----- 152
           + N L  V       +  L++  L  N I+      +    ++  L+L  +         
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315

Query: 153 -----INLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKIS--EIHDFAF 204
                 + +      ++ L +  N I  + +N F  L N+  L L  +  S   + +  F
Sbjct: 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375

Query: 205 NGL-NSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEF-IQNNTFEHLVNLKSI 261
             L +S L  L+L  N+++ I +  F  L  L+ L L  N I   +    +  L N+  I
Sbjct: 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435

Query: 262 SLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVEN 302
            LS NK  ++    F     L  L L    L  +    S  + 
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  101 bits (254), Expect = 4e-24
 Identities = 53/272 (19%), Positives = 108/272 (39%), Gaps = 37/272 (13%)

Query: 37  NQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLP 94
             +  L    +     + L  L + +N I +IE+   +    +  L++  N +       
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE---- 420

Query: 95  KTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLIS 151
                        +   E   + ++  I LS N   +           +++L L    + 
Sbjct: 421 -------------LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 152 TINLN---LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGL 207
            ++ +         +  L LS N I+ +N +    L  +  L L+ N ++ +   A  G 
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 208 N-------STLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK 259
                   S L  L+LE+N    I  + F++L +LK + L  NN+  +  + F + V+LK
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587

Query: 260 SISLSGNKLTRIPDFI---HNKRLSHLNLGYN 288
           S++L  N +T +   +     + L+ L++ +N
Sbjct: 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 99.7 bits (249), Expect = 2e-23
 Identities = 64/274 (23%), Positives = 111/274 (40%), Gaps = 32/274 (11%)

Query: 52  QNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLP----KTMETLSVANN 105
           +   T   I    + +I++      + +  LNM+ N +  + S        ++ LS++N+
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 106 YL------VNYLELNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTI--N 154
           +                + L  + L+ N I +          H+E LDL  N I      
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 155 LNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHD--FAFNGLNSTL 211
                   I ++ LSYN+  +L  N+F  + ++ RL L+   +  +      F  L + L
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN-L 482

Query: 212 EFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNT--------FEHLVNLKSIS 262
             LDL NN + NI +     L+KL+ L L +NN+  +  +          + L +L  ++
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 263 LSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELI 294
           L  N    IP   F     L  ++LG N LN L 
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.7 bits (192), Expect = 5e-16
 Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 25/222 (11%)

Query: 54  KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLPKTM------ETLSVANN 105
            +  +++  N   Q+         S+  L +    L+ +DS P           L ++NN
Sbjct: 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490

Query: 106 YL--VNYLELNRMTSLKWIVLSNNYIKEF-----------VIPNRKHIEKLDLSNNLIST 152
            +  +N   L  +  L+ + L +N +               +    H+  L+L +N    
Sbjct: 491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550

Query: 153 INLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNST 210
           I +    + + +K + L  N ++ L A+ F N  ++  L L+ N I+ +    F      
Sbjct: 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN 610

Query: 211 LEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTF 252
           L  LD+  N       C      + ++   + NI  + ++  
Sbjct: 611 LTELDMRFNPFDCT--CESIAWFVNWINETHTNIPELSSHYL 650

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.2 bits (144), Expect = 7e-10
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 208 NSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNK 267
             + E  D  + +LT +         +  L L +N +  +    F     L S+ +  N 
Sbjct: 3   TVSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 268 LTRIPD--FIHNKRLSHLNLGYNFLNELILES 297
           ++++          L  LNL +N L++L  ++
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKT 92

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  103 bits (258), Expect = 2e-25
 Identities = 37/190 (19%), Positives = 81/190 (42%), Gaps = 9/190 (4%)

Query: 117 TSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLNL-NNTYYIKDLILSYNQ 172
            ++K + LSNN I       +    +++ L L++N I+TI  +  ++   ++ L LSYN 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 173 ISKLNANTFRNL-NVFRLYLKFNKISEIHDF-AFNGLNSTLEFLDLENNRLTNI-NQCFR 229
           +S L+++ F+ L ++  L L  N    + +   F+ L           +  T I  + F 
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGY 287
            L  L+ L +  ++++  +  + + + N+  + L   +   + +        +  L L  
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231

Query: 288 NFLNELILES 297
             L+      
Sbjct: 232 TDLDTFHFSE 241

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  100 bits (252), Expect = 1e-24
 Identities = 45/257 (17%), Positives = 89/257 (34%), Gaps = 26/257 (10%)

Query: 36  DNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTL--- 90
           +N+I  +  ++        L  L +  N I+ IE    +   S+  L++  N L  L   
Sbjct: 61  NNRITYISNSDLQR--CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS 118

Query: 91  --DSLPKTMETLSVANNYLVNYLE---LNRMTSLKWIVLSNNY----IKEFVIPNRKHIE 141
               L   +  L++  N      E    + +T L+ + + N      I+         +E
Sbjct: 119 WFKPLSS-LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177

Query: 142 KLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL------NVFRLYLKFN 194
           +L++  + + +     L +   +  LIL   Q   L               +    L   
Sbjct: 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237

Query: 195 KISEIHDFAFNGL--NSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTF 252
             SE+     N L    T   + + +  L  + +    +  L  L    N ++ + +  F
Sbjct: 238 HFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF 297

Query: 253 EHLVNLKSISLSGNKLT 269
           + L +L+ I L  N   
Sbjct: 298 DRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 88.3 bits (219), Expect = 5e-20
 Identities = 45/262 (17%), Positives = 100/262 (38%), Gaps = 32/262 (12%)

Query: 55  LTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTL-----DSLPKTMETLSVANNYL 107
           + +L +  N I  I N  L    ++  L + SN + T+      SL   +E L ++ NYL
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS-LEHLDLSYNYL 112

Query: 108 --VNYLELNRMTSLKWIVLSNNYIKE------FVIPNRKHIEKLDLSNNLISTINLN-LN 158
             ++      ++SL ++ L  N  K       F    +  I ++  + +  + I      
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV-GNMDTFTKIQRKDFA 171

Query: 159 NTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLE 217
              ++++L +  + +      + +++ NV  L L   +   + +   +  +S +E L+L 
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS-VECLELR 230

Query: 218 NNRLTNIN---------QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL 268
           +  L   +                  + + + + ++  +       +  L  +  S N+L
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQL 289

Query: 269 TRIPD--FIHNKRLSHLNLGYN 288
             +PD  F     L  + L  N
Sbjct: 290 KSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.9 bits (187), Expect = 1e-15
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 206 GLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264
           GL   ++ LDL NNR+T I+    +    L+ L L +N I  I+ ++F  L +L+ + LS
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108

Query: 265 GNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
            N L+ +    F     L+ LNL  N    L
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL 139

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  103 bits (258), Expect = 7e-25
 Identities = 58/245 (23%), Positives = 109/245 (44%), Gaps = 12/245 (4%)

Query: 53  NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTMETLSVANNYLVNY 110
           +++TTL      I  I+ +    ++  +N  +N L  +  L     +  + + NN + + 
Sbjct: 46  DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI 105

Query: 111 LELNRMTSLKWIVLSNNYIKEF-VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILS 169
             L  +T+L  + L NN I +   + N  ++ +L+LS+N IS I+  L+    ++ L   
Sbjct: 106 TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG 164

Query: 170 YNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFR 229
                         L   RL +  NK+S+I         + LE L   NN++++I     
Sbjct: 165 NQVTDLKPLANLTTLE--RLDISSNKVSDISVL---AKLTNLESLIATNNQISDI-TPLG 218

Query: 230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNF 289
            L  L  L L+ N ++ I   T   L NL  + L+ N+++ +       +L+ L LG N 
Sbjct: 219 ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 276

Query: 290 LNELI 294
           ++ + 
Sbjct: 277 ISNIS 281

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 99.7 bits (249), Expect = 1e-23
 Identities = 56/249 (22%), Positives = 115/249 (46%), Gaps = 14/249 (5%)

Query: 53  NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTMETLSVANNYLVNY 110
             L  L  G N +  ++ L    ++  L++ SN +  +  L     +E+L   NN + + 
Sbjct: 156 TSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI 214

Query: 111 LELNRMTSLKWIVLSNNYIKEF-VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILS 169
             L  +T+L  + L+ N +K+   + +  ++  LDL+NN IS +   L+    + +L L 
Sbjct: 215 TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLG 273

Query: 170 YNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCF 228
            NQIS ++      L  +  L L  N++ +I   +       L +L L  N +++I+   
Sbjct: 274 ANQISNISP--LAGLTALTNLELNENQLEDISPISNL---KNLTYLTLYFNNISDISP-V 327

Query: 229 RNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYN 288
            +L KL+ L+ +NN +  +  ++  +L N+  +S   N+++ +    +  R++ L L   
Sbjct: 328 SSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 385

Query: 289 FLNELILES 297
                 +  
Sbjct: 386 AWTNAPVNY 394

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 97.7 bits (244), Expect = 6e-23
 Identities = 59/245 (24%), Positives = 111/245 (45%), Gaps = 14/245 (5%)

Query: 54  KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNYL 111
           +     +G+ ++    +      +  L  D   ++++D +     +  ++ +NN L +  
Sbjct: 25  EKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT 84

Query: 112 ELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSY 170
            L  +T L  I+++NN I +   + N  ++  L L NN I+ I+  L N   +  L LS 
Sbjct: 85  PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSS 143

Query: 171 NQISKLNA-NTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFR 229
           N IS ++A +   +L       +   +  + +       +TLE LD+ +N++++I+    
Sbjct: 144 NTISDISALSGLTSLQQLSFGNQVTDLKPLANL------TTLERLDISSNKVSDISV-LA 196

Query: 230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNF 289
            L  L+ L   NN I  I       L NL  +SL+GN+L  I        L+ L+L  N 
Sbjct: 197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 254

Query: 290 LNELI 294
           ++ L 
Sbjct: 255 ISNLA 259

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 94.3 bits (235), Expect = 9e-22
 Identities = 47/244 (19%), Positives = 102/244 (41%), Gaps = 11/244 (4%)

Query: 54  KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTMETLSVANNYLVNYL 111
            L +L    N I  I  L    ++  L+++ N L+ + +L     +  L +ANN + N  
Sbjct: 200 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA 259

Query: 112 ELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSY 170
            L+ +T L  + L  N I     +     +  L+L+ N +  I+  ++N   +  L L +
Sbjct: 260 PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYF 318

Query: 171 NQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFR 229
           N IS ++     +L  + RL+   NK+S++   A     + + +L   +N+++++     
Sbjct: 319 NNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANL---TNINWLSAGHNQISDLTP-LA 372

Query: 230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNF 289
           NL ++  L L++        N   ++    ++      L            +  ++ +N 
Sbjct: 373 NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNL 432

Query: 290 LNEL 293
            +  
Sbjct: 433 PSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 77.3 bits (191), Expect = 5e-16
 Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 11/177 (6%)

Query: 122 IVLSNNYIKE-FVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNA-N 179
            +  +  I + F         K  L    ++   ++  +   +  L      I  ++   
Sbjct: 7   TITQDTPINQIFTDTALAEKMKTVLGKTNVTDT-VSQTDLDQVTTLQADRLGIKSIDGVE 65

Query: 180 TFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYL 239
              NL   ++    N++++I         + L  + + NN++ +I     NL  L  L L
Sbjct: 66  YLNNLT--QINFSNNQLTDITPL---KNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119

Query: 240 HNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILE 296
            NN I  I     ++L NL  + LS N ++ I        L  L+ G    +   L 
Sbjct: 120 FNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLA 174

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 98.6 bits (246), Expect = 1e-24
 Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 5/127 (3%)

Query: 166 LILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI 224
           + L  N I  +    F     + R+ L  N+ISE+   AF GL S L  L L  N++T +
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS-LNSLVLYGNKITEL 95

Query: 225 -NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLS 281
               F  L  L+ L L+ N I  ++ + F+ L NL  +SL  NKL  I    F   + + 
Sbjct: 96  PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155

Query: 282 HLNLGYN 288
            ++L  N
Sbjct: 156 TMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 89.3 bits (222), Expect = 3e-21
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 4/109 (3%)

Query: 188 RLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEF 246
            + L+ N I  I   AF+     L  +DL NN+++ +    F+ L+ L  L L+ N I  
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKK-LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 247 IQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
           +  + FE L +L+ + L+ NK+  +    F     L+ L+L  N L  +
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI 143

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 72.0 bits (177), Expect = 5e-15
 Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 17/137 (12%)

Query: 117 TSLKWIVLSNNYIKEFVIPNR-----KHIEKLDLSNNLISTIN----LNLNNTYYIKDLI 167
            ++  I L  N IK   IP       K + ++DLSNN IS +       L +   +  L+
Sbjct: 32  ETITEIRLEQNTIKV--IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS---LNSLV 86

Query: 168 LSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-N 225
           L  N+I++L  + F  L ++  L L  NKI+ +   AF  L++ L  L L +N+L  I  
Sbjct: 87  LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN-LNLLSLYDNKLQTIAK 145

Query: 226 QCFRNLKKLKYLYLHNN 242
             F  L+ ++ ++L  N
Sbjct: 146 GTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 71.2 bits (175), Expect = 9e-15
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 206 GLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264
            L  T+  + LE N +  I    F   KKL+ + L NN I  +  + F+ L +L S+ L 
Sbjct: 29  NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88

Query: 265 GNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
           GNK+T +P   F     L  L L  N +N L
Sbjct: 89  GNKITELPKSLFEGLFSLQLLLLNANKINCL 119

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  100 bits (250), Expect = 1e-24
 Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 10/157 (6%)

Query: 141 EKLDLSNNLISTINLNL-NNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISE 198
            +++     ++ +  +L  +T     L LS N +   +  T      + +L L   ++++
Sbjct: 13  LEVNCDKRNLTALPPDLPKDT---TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK 69

Query: 199 IHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNL 258
           +       L   L  LDL +N+L ++    + L  L  L +  N +  +       L  L
Sbjct: 70  LQ--VDGTLPV-LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126

Query: 259 KSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
           + + L GN+L  +P        +L  L+L  N L EL
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 99.0 bits (247), Expect = 3e-24
 Identities = 42/178 (23%), Positives = 72/178 (40%), Gaps = 9/178 (5%)

Query: 117 TSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQI 173
                + LS N +  F    +     + +L+L    ++ + ++      +  L LS+NQ+
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-LGTLDLSHNQL 89

Query: 174 SKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNL 231
             L     + L  +  L + FN+++ +   A  GL   L+ L L+ N L  +        
Sbjct: 90  QSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPT 147

Query: 232 KKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFI-HNKRLSHLNLGYN 288
            KL+ L L NNN+  +       L NL ++ L  N L  IP     +  L    L  N
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 93.6 bits (233), Expect = 3e-22
 Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 9/155 (5%)

Query: 141 EKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISE 198
             L LS NL+ T +L  L     +  L L   +++KL       L  +  L L  N++  
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQS 91

Query: 199 IHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVN 257
           +       L   L  LD+  NRLT++     R L +L+ LYL  N ++ +          
Sbjct: 92  L-PLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 258 LKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFL 290
           L+ +SL+ N LT +P       + L  L L  N L
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.5 bits (173), Expect = 4e-14
 Identities = 41/209 (19%), Positives = 76/209 (36%), Gaps = 45/209 (21%)

Query: 36  DNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPK 95
           +N +     A   P    +LT L +    + +++       +  L++  N LQ+L  L +
Sbjct: 40  ENLLYTFSLATLMP--YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ 97

Query: 96  TMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINL 155
           T+  L                                          LD+S N ++++ L
Sbjct: 98  TLPAL----------------------------------------TVLDVSFNRLTSLPL 117

Query: 156 NL-NNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEF 213
                   +++L L  N++  L          + +L L  N ++E+     NGL + L+ 
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN-LDT 176

Query: 214 LDLENNRLTNINQCFRNLKKLKYLYLHNN 242
           L L+ N L  I + F     L + +LH N
Sbjct: 177 LLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  101 bits (252), Expect = 2e-24
 Identities = 49/233 (21%), Positives = 89/233 (38%), Gaps = 21/233 (9%)

Query: 74  FRSILWLNMDSNLLQTLDS-----LPKTMETLSVANNYLVNYLELN---RMTSLKWIVLS 125
            R+ + L      L+ +           +E + ++ N ++  +E +    +  L  I + 
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGD-LEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 126 NN----YIKEFVIPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYN-QISKLNAN 179
                 YI      N  +++ L +SN  I  + +++  ++     L +  N  I  +  N
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

Query: 180 TFRNL--NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKY 236
           +F  L      L+L  N I EIH+ AFNG     E    +NN L  + N  F        
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQL-DELNLSDNNNLEELPNDVFHGASGPVI 206

Query: 237 LYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNF 289
           L +    I  + +   E+L  L++ S     L ++P       L   +L Y  
Sbjct: 207 LDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  100 bits (251), Expect = 2e-24
 Identities = 41/211 (19%), Positives = 76/211 (36%), Gaps = 13/211 (6%)

Query: 91  DSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIP----NRKHIEKLD 144
             LP+    L      L  +     +    L+ I +S N + E +      N   + ++ 
Sbjct: 26  SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85

Query: 145 LSN-NLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFN-KISEIH 200
           +   N +  IN     N   ++ L++S   I  L      +      L ++ N  I  I 
Sbjct: 86  IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145

Query: 201 DFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK 259
             +F GL+     L L  N +  I N  F   +  +     NNN+E + N+ F       
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205

Query: 260 SISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
            + +S  ++  +P     + K+L   +    
Sbjct: 206 ILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  102 bits (255), Expect = 3e-24
 Identities = 52/294 (17%), Positives = 114/294 (38%), Gaps = 31/294 (10%)

Query: 28  LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSN 85
             +  +   +   +     +     N    +    + + ++    L+ FR +  LN++  
Sbjct: 26  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 85

Query: 86  LLQTLD----SLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEF---VIPN 136
            ++ +D    +   T++ L +  N +  +       +  L  +VL  N +      +  N
Sbjct: 86  QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145

Query: 137 RKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNK 195
              +  L +SNN +  I  +    T  +++L LS N+++ ++ +   +L  F   + +N 
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL--FHANVSYNL 203

Query: 196 ISEIHDFAF---------------NGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLH 240
           +S +                      +N  L  L L++N LT+      N   L  + L 
Sbjct: 204 LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAW-LLNYPGLVEVDLS 262

Query: 241 NNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHN-KRLSHLNLGYNFLNEL 293
            N +E I  + F  +  L+ + +S N+L  +  +      L  L+L +N L  +
Sbjct: 263 YNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV 316

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 66.9 bits (163), Expect = 2e-12
 Identities = 38/213 (17%), Positives = 81/213 (38%), Gaps = 18/213 (8%)

Query: 36  DNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTL-DSLP 94
            N++  ++ +         L    +  N +  +       ++  L+   N +  +   + 
Sbjct: 180 SNRLTHVDLSLIP-----SLFHANVSYNLLSTLAIP---IAVEELDASHNSINVVRGPVN 231

Query: 95  KTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLIS 151
             +  L + +N L +   L     L  + LS N +++         + +E+L +SNN + 
Sbjct: 232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291

Query: 152 TINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTL 211
            +NL       +K L LS+N +  +  N  +   +  LYL  N I  +     + L +  
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKN-- 349

Query: 212 EFLDLENNRLT--NINQCFRNLKKLKYLYLHNN 242
             L L +N     ++   FRN+ +        +
Sbjct: 350 --LTLSHNDWDCNSLRALFRNVARPAVDDADQH 380

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 98.1 bits (245), Expect = 4e-24
 Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 9/180 (5%)

Query: 117 TSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLNL-NNTYYIKDLILSYNQ 172
              K + L +N +             +  L L++N + T+   +      ++ L ++ N+
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 173 ISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRN 230
           +  L    F  L N+  L L  N++  +    F+ L + L +L L  N L ++    F  
Sbjct: 97  LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL-TKLTYLSLGYNELQSLPKGVFDK 155

Query: 231 LKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
           L  LK L L+NN ++ +    F+ L  LK++ L  N+L R+P+  F   ++L  L L  N
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 97.7 bits (244), Expect = 5e-24
 Identities = 47/158 (29%), Positives = 81/158 (51%), Gaps = 6/158 (3%)

Query: 141 EKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISE 198
           +KLDL +N +S++     +    ++ L L+ N++  L A  F+ L N+  L++  NK+  
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99

Query: 199 IHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVN 257
           +    F+ L   L  L L+ N+L ++  + F +L KL YL L  N ++ +    F+ L +
Sbjct: 100 LPIGVFDQL-VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158

Query: 258 LKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
           LK + L  N+L R+P+  F     L  L L  N L  +
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 28/91 (30%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 206 GLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264
            + +  + LDL++N+L+++ ++ F  L KL+ LYL++N ++ +    F+ L NL+++ ++
Sbjct: 34  NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93

Query: 265 GNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
            NKL  +P   F     L+ L L  N L  L
Sbjct: 94  DNKLQALPIGVFDQLVNLAELRLDRNQLKSL 124

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 99.4 bits (247), Expect = 2e-23
 Identities = 56/272 (20%), Positives = 111/272 (40%), Gaps = 14/272 (5%)

Query: 55  LTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTMETLSVANNYLVNYLE 112
           +         I QI   + F   +  N+    +    +     +++ +   N+ + +   
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG 60

Query: 113 LNRMTSLKWIVLSNNYIKEF-VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYN 171
           +  + ++  + L+ N + +   + N K++  L L  N I  ++ +L +   +K L L +N
Sbjct: 61  IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHN 119

Query: 172 QISKLNA-NTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRN 230
            IS +N       L    LYL  NKI++I   +     + L+ L LE+N++++I      
Sbjct: 120 GISDINGLVHLPQLE--SLYLGNNKITDITVLSR---LTKLDTLSLEDNQISDI-VPLAG 173

Query: 231 LKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFL 290
           L KL+ LYL  N+I  ++      L NL  + L   +    P   H   L   N   N  
Sbjct: 174 LTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPI-NHQSNLVVPNTVKNTD 230

Query: 291 NELILESSIVENEIIDQNMLFNSNAVMEDQFS 322
             L+    I ++   ++  +        ++ S
Sbjct: 231 GSLVTPEIISDDGDYEKPNVKWHLPEFTNEVS 262

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 99.4 bits (247), Expect = 3e-23
 Identities = 50/272 (18%), Positives = 104/272 (38%), Gaps = 11/272 (4%)

Query: 54  KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNYL 111
           +     + +  +      N   SI  +  +++ ++++  +     +  L +  N L +  
Sbjct: 22  ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK 81

Query: 112 ELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSY 170
            L  + +L W+ L  N IK+   + + K ++ L L +N IS IN  L +   ++ L L  
Sbjct: 82  PLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN 140

Query: 171 NQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFR 229
           N+I+ +       L  +  L L+ N+IS+I   A     + L+ L L  N ++++ +   
Sbjct: 141 NKITDITV--LSRLTKLDTLSLEDNQISDIVPLAGL---TKLQNLYLSKNHISDL-RALA 194

Query: 230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNF 289
            LK L  L L +        N   +LV   ++  +   L        +      N+ ++ 
Sbjct: 195 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHL 254

Query: 290 LNELILESSIVENEIIDQNMLFNSNAVMEDQF 321
                  S I    +         +  +    
Sbjct: 255 PEFTNEVSFIFYQPVTIGKAKARFHGRVTQPL 286

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 93.6 bits (233), Expect = 4e-22
 Identities = 52/253 (20%), Positives = 108/253 (42%), Gaps = 14/253 (5%)

Query: 54  KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNYL 111
               +  G++++           I  L+     + T++ +     +  L + +N + +  
Sbjct: 20  NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA 79

Query: 112 ELNRMTSLKWIVLSNNYIKEF-VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSY 170
            L  +T +  + LS N +K    I   + I+ LDL++  I+ +   L     ++ L L  
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDL 138

Query: 171 NQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFR 229
           NQI+ ++      L N+  L +   ++S++   A     S L  L  ++N++++I     
Sbjct: 139 NQITNISP--LAGLTNLQYLSIGNAQVSDLTPLAN---LSKLTTLKADDNKISDI-SPLA 192

Query: 230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNF 289
           +L  L  ++L NN I  +      +  NL  ++L+   +T  P F +N  L   N+    
Sbjct: 193 SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNN-LVVPNVVKGP 249

Query: 290 LNELILESSIVEN 302
               I  ++I +N
Sbjct: 250 SGAPIAPATISDN 262

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 83.2 bits (206), Expect = 2e-18
 Identities = 51/245 (20%), Positives = 96/245 (39%), Gaps = 11/245 (4%)

Query: 53  NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTMETLSVANNYLVNY 110
           + +TTL      +  IE +    +++ L +  N +  L  L     +  L ++ N L N 
Sbjct: 41  DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV 100

Query: 111 LELNRMTSLKWIVLSNNYIKEF-VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILS 169
             +  + S+K + L++  I +   +    +++ L L  N I+ I+  L     ++ L + 
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIG 159

Query: 170 YNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCF 228
             Q+S L      NL  +  L    NKIS+I   A       L  + L+NN+++++    
Sbjct: 160 NAQVSDLTP--LANLSKLTTLKADDNKISDISPLA---SLPNLIEVHLKNNQISDV-SPL 213

Query: 229 RNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYN 288
            N   L  + L N  I         +LV    +               N   +  NL +N
Sbjct: 214 ANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWN 273

Query: 289 FLNEL 293
             + +
Sbjct: 274 LTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.5 bits (173), Expect = 4e-14
 Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 11/173 (6%)

Query: 123 VLSNNYIKE-FVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNA-NT 180
           +     I   F  P   +  K+    + ++       +   I  L      ++ +     
Sbjct: 3   ITQPTAINVIFPDPALANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIEGVQY 61

Query: 181 FRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLH 240
             NL    L LK N+I+++         + +  L+L  N L N++     L+ +K L L 
Sbjct: 62  LNNLI--GLELKDNQITDLAPLKN---LTKITELELSGNPLKNVSA-IAGLQSIKTLDLT 115

Query: 241 NNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
           +  I  +       L NL+ + L  N++T I        L +L++G   +++L
Sbjct: 116 STQITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL 166

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 95.1 bits (237), Expect = 7e-22
 Identities = 51/270 (18%), Positives = 93/270 (34%), Gaps = 34/270 (12%)

Query: 54  KLTTLFIGENHIHQI--ENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYL 111
            LT + +            L     +  +N+  N   + + L    + L+          
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA---------- 299

Query: 112 ELNRMTSLKWIVLSNNYIKEFVIPNR----KHIEKLDLSNNLISTINLNLNNTYYIKDLI 167
           +      ++ I +  N +K F +       K +  L+   N +        +   +  L 
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLN 359

Query: 168 LSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ 226
           L+YNQI+++ AN       V  L    NK+  I +       S +  +D   N + +++ 
Sbjct: 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

Query: 227 C--------FRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD----- 273
                          +  + L NN I       F     L SI+L GN LT IP      
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479

Query: 274 ----FIHNKRLSHLNLGYNFLNELILESSI 299
               F +   L+ ++L +N L +L  +   
Sbjct: 480 ENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.0 bits (234), Expect = 2e-21
 Identities = 49/294 (16%), Positives = 101/294 (34%), Gaps = 34/294 (11%)

Query: 54  KLTTLFIGENHIH-QIENLNGFRSILWLNMDSNLLQTLD----SLPKTMETLSVANNYL- 107
           KL  L    N +  ++        +  LN+  N +  +        + +E LS A+N L 
Sbjct: 331 KLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK 390

Query: 108 --VNYLELNRMTSLKWIVLSNNYIKEFV----------IPNRKHIEKLDLSNNLIST-IN 154
              N  +   ++ +  I  S N I                   ++  ++LSNN IS    
Sbjct: 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450

Query: 155 LNLNNTYYIKDLILSYNQISKLNANTFRNL--------NVFRLYLKFNKISEIHDFAFNG 206
              +    +  + L  N ++++  N+ ++          +  + L+FNK++++ D     
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510

Query: 207 LNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHN------NNIEFIQNNTFEHLVNLKS 260
               L  +DL  N  +       N   LK   + N      N              +L  
Sbjct: 511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 261 ISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSN 314
           + +  N + ++ + I    +S L++  N    + L       E     + ++  
Sbjct: 571 LQIGSNDIRKVNEKITPN-ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 79.3 bits (196), Expect = 1e-16
 Identities = 37/290 (12%), Positives = 90/290 (31%), Gaps = 25/290 (8%)

Query: 27  ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNL 86
              M    +   +      ++S  I++ + +           ++         +   SN 
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ---QKSIKKSSRITLKDTQIGQLSNN 194

Query: 87  LQTLDSLPKTM------ETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHI 140
           +     + K +          + N+  V         +           ++    N K +
Sbjct: 195 IT---FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL 251

Query: 141 EKLDLS-NNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVF---------RLY 190
             +++     ++ +   L     ++ + ++ N+             +           +Y
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 191 LKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNN 250
           + +N +              L  L+   N+L      F +  KL  L L  N I  I  N
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN 371

Query: 251 TFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHL---NLGYNFLNELILES 297
                  ++++S + NKL  IP+    K +S +   +  YN +  +  ++
Sbjct: 372 FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.9 bits (169), Expect = 4e-13
 Identities = 33/264 (12%), Positives = 83/264 (31%), Gaps = 32/264 (12%)

Query: 48  SPEIQN--KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANN 105
              I    +L  L +G +     E L G + I     D    +      KT         
Sbjct: 98  PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKT--------- 148

Query: 106 YLVNYLELNRMTSLKWIVLSNNYIKEFVIP---NRKHIEKLDLSNNLISTINLNLNNTYY 162
             V+Y      + L    ++++  ++ +           ++   +N I+ ++  +     
Sbjct: 149 -FVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTK 207

Query: 163 IKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDL-ENNRL 221
           ++   +  +     N              ++ +  +  D  ++ L   L  +++     L
Sbjct: 208 LRQFYMGNSPFVAENICEAWEN----ENSEYAQQYKTEDLKWDNLKD-LTDVEVYNCPNL 262

Query: 222 TNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEH--------LVNLKSISLSGNKLTR--I 271
           T +    + L +++ + +  N     +    +            ++ I +  N L    +
Sbjct: 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV 322

Query: 272 PDFIHN-KRLSHLNLGYNFLNELI 294
              +   K+L  L   YN L   +
Sbjct: 323 ETSLQKMKKLGMLECLYNQLEGKL 346

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 39/255 (15%), Positives = 84/255 (32%), Gaps = 37/255 (14%)

Query: 53  NKLTTLFIGENHIHQI---ENLNGFRSILWLNMDSNLLQTLD-----SLPKT------ME 98
            ++  L    N +  I    +      +  ++   N + ++D      L  T      + 
Sbjct: 377 EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436

Query: 99  TLSVANNYLVN--YLELNRMTSLKWIVLSNNYIKEF----------VIPNRKHIEKLDLS 146
           +++++NN +        +  + L  I L  N + E              N   +  +DL 
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 147 NNLISTI--NLNLNNTYYIKDLILSYNQISKL-----NANTFRNLNVFR-LYLKFNKISE 198
            N ++ +  +       Y+  + LSYN  SK      N++T +   +      + N+   
Sbjct: 497 FNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556

Query: 199 IHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNL 258
                     S L  L + +N +  +N+       +  L + +N    I  +     +  
Sbjct: 557 EWPEGITLCPS-LTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEA 613

Query: 259 KSISLSGNKLTRIPD 273
               L  +K   I  
Sbjct: 614 GMYMLFYDKTQDIRG 628

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 4e-10
 Identities = 27/228 (11%), Positives = 65/228 (28%), Gaps = 37/228 (16%)

Query: 98  ETLSVANNYLVNYL--ELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINL 155
             LS+        +   + ++T L+ + L ++  K       + +      +  +S    
Sbjct: 84  TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK-----VNERLFGPKGISANMSDEQK 138

Query: 156 NLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLD 215
                     +      +       F +L    +     + S         +      + 
Sbjct: 139 QKMR------MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS---RITLKDTQIG 189

Query: 216 LENNRLTNINQCFRNLKKLKYLYLHNNNI------EFIQNNTFEHLVNLKSISLSGNKLT 269
             +N +T +++    L KL+  Y+ N+        E  +N   E+    K+  L  + L 
Sbjct: 190 QLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK 249

Query: 270 R--------------IPDFIHN-KRLSHLNLGYNFLNELILESSIVEN 302
                          +P F+     +  +N+  N            + 
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA 297

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 29/213 (13%), Positives = 66/213 (30%), Gaps = 29/213 (13%)

Query: 54  KLTTLFIGENHIHQI--ENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYL 111
            ++++ +  N I +   E  +    +  +N+  N+L  +             N+      
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP-----------KNSLKDENE 482

Query: 112 ELNRMTSLKWIVLSNNYI----KEFVIPNRKHIEKLDLSNNLISTI-----NL-NLNNTY 161
                  L  I L  N +     +F      ++  +DLS N  S       N   L    
Sbjct: 483 NFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFG 542

Query: 162 YIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNR 220
                    N+  +          ++ +L +  N I ++       +   +  LD+++N 
Sbjct: 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV----NEKITPNISVLDIKDNP 598

Query: 221 LTNIN-QCFRNLKKLKYLYLHNNNIEFIQNNTF 252
             +I+        +     L  +  + I+    
Sbjct: 599 NISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDA 631

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 16/102 (15%)

Query: 208 NSTLEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNIEF---------IQNNTFEHLVN 257
           N  +  L LE    +  +      L +L+ L L ++  +          I  N  +    
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 258 LKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSI 299
              +      +   P      R    +L  + +N    + SI
Sbjct: 140 KMRMHYQKTFVDYDP------REDFSDLIKDCINSDPQQKSI 175

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 93.3 bits (232), Expect = 2e-21
 Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 30/222 (13%)

Query: 54  KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYL 111
           K+  + +  + +  +        +S+ +L++  NL+                  YL N  
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE---------------YLKNSA 355

Query: 112 ELNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKLDLSNNLISTINLNLNNTYYIKDL 166
                 SL+ +VLS N+++            K++  LD+S N    +  +      ++ L
Sbjct: 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFL 415

Query: 167 ILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ 226
            LS   I  +     + L V  L +  N +     F        L+ L +  N+L  +  
Sbjct: 416 NLSSTGIRVVKTCIPQTLEV--LDVSNNNLDSFSLFLPR-----LQELYISRNKLKTLPD 468

Query: 227 CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL 268
                  L  + +  N ++ + +  F+ L +L+ I L  N  
Sbjct: 469 AS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 92.9 bits (231), Expect = 4e-21
 Identities = 38/285 (13%), Positives = 99/285 (34%), Gaps = 28/285 (9%)

Query: 36  DNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPK 95
           D  +A  + +    +  +           +   E+ N    +L   ++ + ++  D    
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264

Query: 96  TMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLIST 152
            +   + + + +V+ L      +++ + +   Y+      V    + ++++ + N+ +  
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL 324

Query: 153 INLN-LNNTYYIKDLILSYNQISKLNANTFRNLNVF----RLYLKFNKISEIHD--FAFN 205
           +  +   +   ++ L LS N + +           +     L L  N +  +        
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384

Query: 206 GLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTF------------- 252
            L + L  LD+  N    +    +  +K+++L L +  I  ++                 
Sbjct: 385 TLKN-LTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNL 443

Query: 253 ----EHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
                 L  L+ + +S NKL  +PD      L  + +  N L  +
Sbjct: 444 DSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSV 488

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.1 bits (216), Expect = 3e-19
 Identities = 51/240 (21%), Positives = 101/240 (42%), Gaps = 12/240 (5%)

Query: 91  DSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDL 145
             L   M++L ++ N +  + + +L    +L+ ++L ++ I         +   +E LDL
Sbjct: 22  SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81

Query: 146 SNNLISTINLN-LNNTYYIKDLILSYNQISKLNAN-TFRNL-NVFRLYL-KFNKISEIHD 201
           S+N +S+++ +       +K L L  N    L     F NL N+  L +      SEI  
Sbjct: 82  SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141

Query: 202 FAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKS 260
             F GL S L  L+++   L N  +Q  ++++ + +L LH +   F+     + L +++ 
Sbjct: 142 IDFAGLTS-LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200

Query: 261 ISLSGNKLTRIPDFIHNKRLSHLNL-GYNFLNELILESSIVENEIIDQNMLFNSNAVMED 319
           + L    L R              +    F   ++ + S  E   + + +L  S    +D
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.1 bits (216), Expect = 3e-19
 Identities = 50/284 (17%), Positives = 108/284 (38%), Gaps = 35/284 (12%)

Query: 54  KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLP-----KTMETLSVANNY 106
            L  L + +NH+  + +       S+ +LN+  N  QTL           ++TL + N  
Sbjct: 75  SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134

Query: 107 LVNYLE---LNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTI-NLNLNN 159
             + +       +TSL  + +    ++ +    + + + I  L L  +  + +  +  + 
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194

Query: 160 TYYIKDLILSYNQISKLNANTFRNLNVFR-LYLKFNKISEIHDFAFNGL---------NS 209
              ++ L L    +++   +      V   +     + S + D +FN L          S
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254

Query: 210 TLEFLDLENNRLTNINQ---------CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKS 260
            +EF D   N L + N                 ++ L++    + +  +  +  L  +K 
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314

Query: 261 ISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVEN 302
           I++  +K+  +P     H K L  L+L  N + E  L++S  + 
Sbjct: 315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 84.8 bits (210), Expect = 2e-18
 Identities = 51/233 (21%), Positives = 94/233 (40%), Gaps = 32/233 (13%)

Query: 76  SILWLNMDSNLLQTLD----SLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYI 129
           +I  L++    L        SL + ++ ++V N+ +  V       + SL+++ LS N +
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346

Query: 130 KEFVIPNR------KHIEKLDLSNNLISTIN------LNLNNTYYIKDLILSYNQISKLN 177
            E  + N         ++ L LS N + ++       L L N   +  L +S N    + 
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN---LTSLDISRNTFHPMP 403

Query: 178 ANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYL 237
            +      +  L L    I  +       +  TLE LD+ NN L +       L +L+ L
Sbjct: 404 DSCQWPEKMRFLNLSSTGIRVV----KTCIPQTLEVLDVSNNNLDSF---SLFLPRLQEL 456

Query: 238 YLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
           Y+  N ++ + + +      L  + +S N+L  +PD  F     L  + L  N
Sbjct: 457 YISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 78.2 bits (193), Expect = 3e-16
 Identities = 36/270 (13%), Positives = 88/270 (32%), Gaps = 29/270 (10%)

Query: 49  PEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNY 106
             +   + +L +  N I  I +  L    ++  L + S+ + T++               
Sbjct: 22  SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA------------ 69

Query: 107 LVNYLELNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLN--LNNTY 161
                    + SL+ + LS+N++             ++ L+L  N   T+ +     N  
Sbjct: 70  ------FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 162 YIKDLILS-YNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENN 219
            ++ L +      S++    F  L ++  L +K   +      +   +   +  L L  +
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD-IHHLTLHLS 182

Query: 220 RLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNK 278
               +       L  ++YL L + N+   Q +          +     + + + D   N+
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242

Query: 279 RLSHLNLGYNFLNELILESSIVENEIIDQN 308
            L  L            + ++      + +
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPS 272

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.1 bits (190), Expect = 7e-16
 Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 7/136 (5%)

Query: 168 LSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQ 226
                 + + +     +    L L FNKI+ I         + L+ L L+++R+  I   
Sbjct: 12  GRSRSFTSIPSGLTAAMKS--LDLSFNKITYIGHGDLRAC-ANLQVLILKSSRINTIEGD 68

Query: 227 CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD---FIHNKRLSHL 283
            F +L  L++L L +N++  + ++ F  L +LK ++L GN    +     F +   L  L
Sbjct: 69  AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128

Query: 284 NLGYNFLNELILESSI 299
            +G       I     
Sbjct: 129 RIGNVETFSEIRRIDF 144

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 90.5 bits (225), Expect = 4e-21
 Identities = 47/244 (19%), Positives = 99/244 (40%), Gaps = 11/244 (4%)

Query: 54  KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNYL 111
           +     + +  +      N   SI  +  +++ ++++  +     +  L +  N L +  
Sbjct: 25  ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK 84

Query: 112 ELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSY 170
            L  + +L W+ L  N +K+   + + K ++ L L +N IS IN  L +   ++ L L  
Sbjct: 85  PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN 143

Query: 171 NQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFR 229
           N+I+ +       L  +  L L+ N+IS+I   A     + L+ L L  N ++++ +   
Sbjct: 144 NKITDITV--LSRLTKLDTLSLEDNQISDIVPLAGL---TKLQNLYLSKNHISDL-RALA 197

Query: 230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNF 289
            LK L  L L +        N   +LV   ++  +   L        +      N+ ++ 
Sbjct: 198 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHL 257

Query: 290 LNEL 293
               
Sbjct: 258 PEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 81.6 bits (202), Expect = 5e-18
 Identities = 55/243 (22%), Positives = 94/243 (38%), Gaps = 31/243 (12%)

Query: 56  TTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELNR 115
           +        I QI + + F   +  N+    +    +                     N 
Sbjct: 5   SETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQ--------------------NE 44

Query: 116 MTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQIS 174
           + S+  I+ +N+ IK    I    ++ KL L+ N ++ I   L N   +  L L  N++ 
Sbjct: 45  LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVK 103

Query: 175 KLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKK 233
            L++   ++L  +  L L+ N IS+I+          LE L L NN++T+I      L K
Sbjct: 104 DLSS--LKDLKKLKSLSLEHNGISDINGLVHL---PQLESLYLGNNKITDI-TVLSRLTK 157

Query: 234 LKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
           L  L L +N I  I       L  L+++ LS N ++ +      K L  L L        
Sbjct: 158 LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNK 215

Query: 294 ILE 296
            + 
Sbjct: 216 PIN 218

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 90.8 bits (226), Expect = 1e-20
 Identities = 53/245 (21%), Positives = 107/245 (43%), Gaps = 19/245 (7%)

Query: 49  PEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLV 108
            ++   L  L +  N + ++  L     +  +++D+N L+ L  LP ++E ++  NN L 
Sbjct: 127 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 186

Query: 109 NYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLIL 168
              EL  +  L  I   NN +K+        +E +   NN++  +   L N  ++  +  
Sbjct: 187 ELPELQNLPFLTAIYADNNSLKKL-PDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYA 244

Query: 169 SYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCF 228
             N +  L  +   +L    L ++ N ++++ +     L  +L FLD+  N  + +++  
Sbjct: 245 DNNLLKTLP-DLPPSLE--ALNVRDNYLTDLPE-----LPQSLTFLDVSENIFSGLSEL- 295

Query: 229 RNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYN 288
                L YL   +N I  +     +   +L+ +++S NKL  +P       L  L   +N
Sbjct: 296 --PPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLIELPALPPR--LERLIASFN 347

Query: 289 FLNEL 293
            L E+
Sbjct: 348 HLAEV 352

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 85.0 bits (211), Expect = 1e-18
 Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 21/242 (8%)

Query: 54  KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLEL 113
            L  +  G N + ++  L     +  +  D+N L+ L  LP ++E++   NN L    EL
Sbjct: 174 SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPEL 233

Query: 114 NRMTSLKWIVLSNNYIKEFVIPNR-KHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQ 172
             +  L  I   NN +K   +P+    +E L++ +N ++ +     +   +  L +S N 
Sbjct: 234 QNLPFLTTIYADNNLLKT--LPDLPPSLEALNVRDNYLTDLPELPQS---LTFLDVSENI 288

Query: 173 ISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLK 232
            S L   +    N++ L    N+I  + D     L  +LE L++ NN+L  +        
Sbjct: 289 FSGL---SELPPNLYYLNASSNEIRSLCD-----LPPSLEELNVSNNKLIEL---PALPP 337

Query: 233 KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNE 292
           +L+ L    N++  +     E   NLK + +  N L   PD   +     +N     + E
Sbjct: 338 RLERLIASFNHLAEVP----ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393

Query: 293 LI 294
           L 
Sbjct: 394 LP 395

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 59/259 (22%), Positives = 117/259 (45%), Gaps = 32/259 (12%)

Query: 36  DNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPK 95
           +N + +L      P++   L ++  G N + ++  L     +  +  D+NLL+TL  LP 
Sbjct: 204 NNSLKKL------PDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPP 257

Query: 96  TMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNR-KHIEKLDLSNNLISTIN 154
           ++E L+V +NYL +  EL    SL ++ +S N      +     ++  L+ S+N I ++ 
Sbjct: 258 SLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSG--LSELPPNLYYLNASSNEIRSLC 313

Query: 155 LNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFL 214
               +   +++L +S N++ +L A     L   RL   FN ++E+ +     L   L+ L
Sbjct: 314 DLPPS---LEELNVSNNKLIELPA-LPPRLE--RLIASFNHLAEVPE-----LPQNLKQL 362

Query: 215 DLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDF 274
            +E N L        +++ L+     N+++  +     E   NLK + +  N L   PD 
Sbjct: 363 HVEYNPLREFPDIPESVEDLR----MNSHLAEV----PELPQNLKQLHVETNPLREFPDI 414

Query: 275 IHNKRLSHLNLGYNFLNEL 293
             +  +  L +    + + 
Sbjct: 415 PES--VEDLRMNSERVVDP 431

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 75.0 bits (185), Expect = 3e-15
 Identities = 36/205 (17%), Positives = 81/205 (39%), Gaps = 16/205 (7%)

Query: 90  LDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNL 149
           L  +P   E +     Y   + E  R             +        +   +L+L+N  
Sbjct: 23  LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82

Query: 150 ISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNS 209
           +S++     +   ++ L+ S N +++L        ++         +S+        L  
Sbjct: 83  LSSLPELPPH---LESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD--------LPP 131

Query: 210 TLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT 269
            LE+L + NN+L  + +  +N   LK + + NN+++ +     +   +L+ I+   N+L 
Sbjct: 132 LLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKL----PDLPPSLEFIAAGNNQLE 186

Query: 270 RIPDFIHNKRLSHLNLGYNFLNELI 294
            +P+  +   L+ +    N L +L 
Sbjct: 187 ELPELQNLPFLTAIYADNNSLKKLP 211

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 40/221 (18%), Positives = 90/221 (40%), Gaps = 20/221 (9%)

Query: 49  PEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLV 108
           P++   L  L + +N++  +  L   +S+ +L++  N+   L  LP  +  L+ ++N + 
Sbjct: 253 PDLPPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR 310

Query: 109 NYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLIL 168
           +  +L    SL+ + +SNN + E        +E+L  S N ++ +     N   +K L +
Sbjct: 311 SLCDL--PPSLEELNVSNNKLIELP-ALPPRLERLIASFNHLAEVPELPQN---LKQLHV 364

Query: 169 SYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCF 228
            YN + +   +   ++   R+     ++ E        L   L+ L +E N L       
Sbjct: 365 EYNPLREF-PDIPESVEDLRMNSHLAEVPE--------LPQNLKQLHVETNPLREFPDI- 414

Query: 229 RNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT 269
              + ++ L +++  +        E    L+      +   
Sbjct: 415 --PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 44/204 (21%), Positives = 90/204 (44%), Gaps = 31/204 (15%)

Query: 36  DNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPK 95
           DN + +L      PE+   LT L + EN    +  L    ++ +LN  SN +++L  LP 
Sbjct: 266 DNYLTDL------PELPQSLTFLDVSENIFSGLSEL--PPNLYYLNASSNEIRSLCDLPP 317

Query: 96  TMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-- 153
           ++E L+V+NN L+    L     L+ ++ S N++ E V    +++++L +  N +     
Sbjct: 318 SLEELNVSNNKLIELPAL--PPRLERLIASFNHLAE-VPELPQNLKQLHVEYNPLREFPD 374

Query: 154 ------NLNLNNTYY--------IKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEI 199
                 +L +N+           +K L +  N + +         +V  L +   ++ + 
Sbjct: 375 IPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE---SVEDLRMNSERVVDP 431

Query: 200 HDFAFNGLNSTLEFLDLENNRLTN 223
           ++FA    +  LE    E++   +
Sbjct: 432 YEFAHETTDK-LEDDVFEHHHHHH 454

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 15/102 (14%)

Query: 205 NGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLV-------- 256
           N  N+ L+     ++ LT +     N+K     Y   +  E                   
Sbjct: 7   NVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 257 -----NLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
                    + L+   L+ +P+   +  L  L    N L EL
Sbjct: 67  DCLDRQAHELELNNLGLSSLPELPPH--LESLVASCNSLTEL 106

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.7 bits (225), Expect = 2e-20
 Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 28/243 (11%)

Query: 53  NKLTTLFIGENHIHQI-ENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNY- 110
           N    L +GE+ +  + + L     I  L +  N L +L +LP  + TL V+ N L +  
Sbjct: 40  NGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLP 97

Query: 111 LELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSY 170
           +    +  L        ++          + KL +  N ++++ +       +++L +S 
Sbjct: 98  VLPPGLLELSIFSNPLTHLPALP----SGLCKLWIFGNQLTSLPVLPPG---LQELSVSD 150

Query: 171 NQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRN 230
           NQ++ L A     L   +L+   N+++ +       L S L+ L + +N+L ++      
Sbjct: 151 NQLASLPAL-PSELC--KLWAYNNQLTSL-----PMLPSGLQELSVSDNQLASLPTLPSE 202

Query: 231 LKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFL 290
           L K   L+ +NN +  +          LK + +SGN+LT +P       L  L +  N L
Sbjct: 203 LYK---LWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLPVLPSE--LKELMVSGNRL 253

Query: 291 NEL 293
             L
Sbjct: 254 TSL 256

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 81.1 bits (200), Expect = 4e-17
 Identities = 50/246 (20%), Positives = 98/246 (39%), Gaps = 21/246 (8%)

Query: 49  PEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLV 108
           P + + L  L+I  N +  +  L     +  L++  N L +L +LP  +  L   NN L 
Sbjct: 117 PALPSGLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT 174

Query: 109 NYLELNRMTSLKWIVLSNNYIKEFVIPNR-KHIEKLDLSNNLISTINLNLNNTYYIKDLI 167
           +   L   + L+ + +S+N +    +P     + KL   NN ++++    +    +K+LI
Sbjct: 175 SLPML--PSGLQELSVSDNQLAS--LPTLPSELYKLWAYNNRLTSLPALPSG---LKELI 227

Query: 168 LSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQC 227
           +S N+++ L       L    L +  N+++ +       L S L  L +  N+LT + + 
Sbjct: 228 VSGNRLTSLPV-LPSELK--ELMVSGNRLTSLPM-----LPSGLLSLSVYRNQLTRLPES 279

Query: 228 FRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGY 287
             +L     + L  N +      T + L  + S       + R      +       L  
Sbjct: 280 LIHLSSETTVNLEGNPLSER---TLQALREITSAPGYSGPIIRFDMAGASAPRETRALHL 336

Query: 288 NFLNEL 293
              + L
Sbjct: 337 AAADWL 342

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 28/156 (17%), Positives = 53/156 (33%), Gaps = 11/156 (7%)

Query: 36  DNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPK 95
           +N++  L      P + + L  L +  N +  +  L     +  L +  N L +L  LP 
Sbjct: 210 NNRLTSL------PALPSGLKELIVSGNRLTSLPVLPS--ELKELMVSGNRLTSLPMLPS 261

Query: 96  TMETLSVANNYLVNYL--ELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI 153
            + +LSV  N L   L   L  ++S   + L  N + E  +   + I      +  I   
Sbjct: 262 GLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRF 320

Query: 154 NLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRL 189
           ++   +       +        + A         R 
Sbjct: 321 DMAGASAPRETRALHLAAADWLVPAREGEPAPADRW 356

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 86.2 bits (214), Expect = 6e-20
 Identities = 43/213 (20%), Positives = 88/213 (41%), Gaps = 21/213 (9%)

Query: 49  PEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNL-LQTL-----DSLPKTMETL 100
           P +     TL + E H+  I +   +   +I  + +  ++ LQ L      +L K +  +
Sbjct: 27  PSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK-VTHI 85

Query: 101 SVANNYLVNYLE---LNRMTSLKWIVLSNNYIKEF----VIPNRKHIEKLDLS-NNLIST 152
            + N   + Y++   L  +  LK++ + N  +K F     + +      L+++ N  +++
Sbjct: 86  EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS 145

Query: 153 INLNL--NNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNK-ISEIHDFAFNGLNS 209
           I +N           L L  N  + +    F    +  +YL  NK ++ I   AF G+ S
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205

Query: 210 TLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHN 241
               LD+    +T + ++   +LK+L       
Sbjct: 206 GPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 85.8 bits (213), Expect = 8e-20
 Identities = 42/221 (19%), Positives = 85/221 (38%), Gaps = 15/221 (6%)

Query: 80  LNMDSNLLQTLDSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNN----YIKEFV 133
             +    +Q + SLP + +TL +   +L  +     + + ++  I +S +     ++   
Sbjct: 16  FRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS 75

Query: 134 IPNRKHIEKLDLSNN-LISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYL 191
             N   +  +++ N   ++ I+ + L     +K L +    +      T          L
Sbjct: 76  FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFIL 135

Query: 192 KF---NKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNN-IEFI 247
           +      ++ I   AF GL +    L L NN  T++     N  KL  +YL+ N  +  I
Sbjct: 136 EITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVI 195

Query: 248 QNNTFEHLVN-LKSISLSGNKLTRIPD--FIHNKRLSHLNL 285
             + F  + +    + +S   +T +P     H K L   N 
Sbjct: 196 DKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 77.0 bits (190), Expect = 1e-16
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 188 RLYLKFNKISEIHDFAFNGLNSTLEFLDL-ENNRLTNI-NQCFRNLKKLKYLYLHNNN-I 244
            L L    +  I   AF+ L + +  + +  +  L  + +  F NL K+ ++ + N   +
Sbjct: 35  TLKLIETHLRTIPSHAFSNLPN-ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93

Query: 245 EFIQNNTFEHLVNLKSISLSGNKLTRIPDFI---HNKRLSHLNLGYNFLNELI 294
            +I  +  + L  LK + +    L   PD            L +  N     I
Sbjct: 94  TYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI 146

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 84.4 bits (209), Expect = 3e-19
 Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 5/131 (3%)

Query: 164 KDLILSYNQISKLNANTFRNLNVFR-LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT 222
           + L L    ++ L+  TFR L     L L +N++  +    F+ L + L  L L NN+L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL-TELGTLGLANNQLA 96

Query: 223 NI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNK--R 279
           ++    F +L +L  LYL  N ++ + +  F+ L  LK + L+ N+L  IP    +K   
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156

Query: 280 LSHLNLGYNFL 290
           L  L+L  N L
Sbjct: 157 LQTLSLSTNQL 167

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 82.8 bits (205), Expect = 1e-18
 Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 6/153 (3%)

Query: 141 EKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISE 198
           EKLDL +  ++T++         +  L L YNQ+  L+A  F +L  +  L L  N+++ 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 199 IHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVN 257
           +    F+ L + L+ L L  N+L ++ +  F  L KLK L L+ N ++ I    F+ L N
Sbjct: 98  LPLGVFDHL-TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156

Query: 258 LKSISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
           L+++SLS N+L  +P   F    +L  + L  N
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 84.6 bits (209), Expect = 2e-18
 Identities = 44/274 (16%), Positives = 93/274 (33%), Gaps = 21/274 (7%)

Query: 28  LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLL 87
             +  EN +  ++ L+         N+ + L +   ++  + + N    I  L +  N L
Sbjct: 39  QALPGENRNEAVSLLKECLI-----NQFSELQLNRLNLSSLPD-NLPPQITVLEITQNAL 92

Query: 88  QTLDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEF--VIPNRKHIEKLDL 145
            +L  LP ++E L   +N L    EL    SLK + + NN +     +      +E ++ 
Sbjct: 93  ISLPELPASLEYLDACDNRLSTLPEL--PASLKHLDVDNNQLTMLPELPAL---LEYINA 147

Query: 146 SNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFN 205
            NN ++ +     +   ++ L +  NQ++ L      +L    L +  N +  +      
Sbjct: 148 DNNQLTMLPELPTS---LEVLSVRNNQLTFL-PELPESLE--ALDVSTNLLESLPAVPVR 201

Query: 206 --GLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISL 263
                 T  F     NR+T+I +   +L     + L +N +      +            
Sbjct: 202 NHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261

Query: 264 SGNKLTRIPDFIHNKRLSHLNLGYNFLNELILES 297
                +      +       +    +  E     
Sbjct: 262 PRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSD 295

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.0 bits (208), Expect = 3e-18
 Identities = 52/241 (21%), Positives = 92/241 (38%), Gaps = 15/241 (6%)

Query: 54  KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLD-SLPKTMETLSVANNYLVNYLE 112
           KLT L    N + ++ +++    + +LN   N L  +D S    +  L    N  +  L+
Sbjct: 107 KLTYLNCDTNKLTKL-DVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD 165

Query: 113 LNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQ 172
           +   T L  +  S N I E  +   K + +L+   N I+ ++LN N    +  L  S N+
Sbjct: 166 VTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNI--QLTFLDCSSNK 223

Query: 173 ISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLK 232
           +++++      L         N ++E+         S L  L      L  I+    +  
Sbjct: 224 LTEIDVTPLTQLTY--FDCSVNPLTELDV----STLSKLTTLHCIQTDLLEID--LTHNT 275

Query: 233 KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNE 292
           +L Y          I+     H   L  +      +T + D   N +L +L L    L E
Sbjct: 276 QLIYFQAEGCRK--IKELDVTHNTQLYLLDCQAAGITEL-DLSQNPKLVYLYLNNTELTE 332

Query: 293 L 293
           L
Sbjct: 333 L 333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.0 bits (208), Expect = 3e-18
 Identities = 51/242 (21%), Positives = 96/242 (39%), Gaps = 15/242 (6%)

Query: 53  NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLD-SLPKTMETLSVANNYLVNYL 111
             LT+L    + I  +  +     +  L   SN + TLD S    +  L+  +N L N L
Sbjct: 42  ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTN-L 100

Query: 112 ELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYN 171
           ++  +T L ++    N + +  +     +  L+ + N ++ I+++ N    + +L    N
Sbjct: 101 DVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNT--QLTELDCHLN 158

Query: 172 QISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNL 231
           +       T     +  L   FNKI+E+        N  L  L+ + N +T ++      
Sbjct: 159 KKITKLDVT-PQTQLTTLDCSFNKITELDV----SQNKLLNRLNCDTNNITKLD--LNQN 211

Query: 232 KKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLN 291
            +L +L   +N +  I       L  L     S N LT +       +L+ L+     L 
Sbjct: 212 IQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQTDLL 267

Query: 292 EL 293
           E+
Sbjct: 268 EI 269

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 77.8 bits (192), Expect = 4e-16
 Identities = 46/243 (18%), Positives = 92/243 (37%), Gaps = 29/243 (11%)

Query: 74  FRSILWLNMDSNLLQTLD-SLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEF 132
           F S +    +     T+      T+ +L   N+ + +   + ++T L  ++ ++N I   
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL 79

Query: 133 VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLK 192
            +    ++  L   +N ++ +++       +  L    N+++KL+ +    L    L   
Sbjct: 80  DLSQNTNLTYLACDSNKLTNLDVTPLTK--LTYLNCDTNKLTKLDVSQNPLLTY--LNCA 135

Query: 193 FNKISEIHDFAFNGL------------------NSTLEFLDLENNRLTNINQCFRNLKKL 234
            N ++EI       L                   + L  LD   N++T ++      K L
Sbjct: 136 RNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLL 193

Query: 235 KYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELI 294
             L    NNI  +        + L  +  S NKLT I D     +L++ +   N L EL 
Sbjct: 194 NRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-DVTPLTQLTYFDCSVNPLTELD 249

Query: 295 LES 297
           + +
Sbjct: 250 VST 252

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 26/213 (12%), Positives = 65/213 (30%), Gaps = 7/213 (3%)

Query: 54  KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLD-SLPKTMETLSVANNYLVNYLE 112
           +LT      N + ++ +++    +  L+     L  +D +    +          +  L+
Sbjct: 234 QLTYFDCSVNPLTEL-DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELD 292

Query: 113 LNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQ 172
           +   T L  +      I E  +     +  L L+N  ++ ++++ N    +K L      
Sbjct: 293 VTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTK--LKSLSCVNAH 350

Query: 173 ISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLK 232
           I   ++       +   +    +   +        + T+       ++  N         
Sbjct: 351 IQDFSSVGK-IPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNI--EPG 407

Query: 233 KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSG 265
                    N I +   +T    V     S +G
Sbjct: 408 DGGVYDQATNTITWENLSTDNPAVTYTFTSENG 440

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 32/163 (19%), Positives = 63/163 (38%), Gaps = 13/163 (7%)

Query: 133 VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNA-NTFRNLNVFRLYL 191
             P+     ++  +  + +T  ++      +  L    + I+ +        L   +L  
Sbjct: 14  WFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLT--KLIC 71

Query: 192 KFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNT 251
             N I+ +        N+ L +L  ++N+LTN++     L KL YL    N +  +    
Sbjct: 72  TSNNITTLDL----SQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKL---D 122

Query: 252 FEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELI 294
                 L  ++ + N LT I D  HN +L+ L+   N     +
Sbjct: 123 VSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKL 164

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 81.2 bits (201), Expect = 6e-18
 Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 11/202 (5%)

Query: 94  PKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEF-VIPNRKHIEKLDLSNNLIST 152
                  ++    + + +  N + S+  I+ +N+ IK    I    ++  L L  N +  
Sbjct: 18  FAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD 77

Query: 153 INL--NLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNS 209
           I+    L N      LIL+ NQ+  L    F  L N+  L L  N++  + D  F+ L +
Sbjct: 78  ISALKELTNL---TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL-T 133

Query: 210 TLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL 268
            L +L+L +N+L ++    F  L  L  L L  N ++ +    F+ L  LK + L  N+L
Sbjct: 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193

Query: 269 TRIPD--FIHNKRLSHLNLGYN 288
             +PD  F     L ++ L  N
Sbjct: 194 KSVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 214 LDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD 273
            +L+   +T+       L  +  +  +N++I+ +Q    ++L N++ ++L GNKL  I  
Sbjct: 24  ANLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDISA 80

Query: 274 FIHNKRLSHLNLGYNFLNEL 293
                 L++L L  N L  L
Sbjct: 81  LKELTNLTYLILTGNQLQSL 100

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 77.7 bits (192), Expect = 3e-17
 Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 5/104 (4%)

Query: 188 RLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEF 246
            LYL  N+ + +     +     L  +DL NNR++ + NQ F N+ +L  L L  N +  
Sbjct: 35  ELYLDGNQFTLVPK-ELSNYKH-LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 247 IQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
           I   TF+ L +L+ +SL GN ++ +P+  F     LSHL +G N
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 71.2 bits (175), Expect = 7e-15
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 141 EKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEI 199
            +L L  N  + +   L+N  ++  + LS N+IS L+  +F N+  +  L L +N++  I
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 200 HDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNN 242
               F+GL S L  L L  N ++ +    F +L  L +L +  N
Sbjct: 94  PPRTFDGLKS-LRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 206 GLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSG 265
           G+   +  L L+ N+ T + +   N K L  + L NN I  + N +F ++  L ++ LS 
Sbjct: 28  GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87

Query: 266 NKLTRIPDFIHNK--RLSHLNLGYN 288
           N+L  IP    +    L  L+L  N
Sbjct: 88  NRLRCIPPRTFDGLKSLRLLSLHGN 112

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 76.6 bits (189), Expect = 2e-16
 Identities = 42/235 (17%), Positives = 88/235 (37%), Gaps = 12/235 (5%)

Query: 63  NHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTMETLSVANNYLVNYLELNRMTSLK 120
             I+Q+    G  + +  N+    +  L S      ++  +  N+ + +   +   T+LK
Sbjct: 7   TPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLK 66

Query: 121 WIVLSNNYIKEF-VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNA- 178
            + LS+N I +   + +   +E+L ++ N +  +N   +    +  L L  N++   ++ 
Sbjct: 67  ELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC--LSRLFLDNNELRDTDSL 124

Query: 179 NTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLY 238
              +NL +  L ++ NK+  I    F    S LE LDL  N +TN       LKK+ ++ 
Sbjct: 125 IHLKNLEI--LSIRNNKLKSIVMLGFL---SKLEVLDLHGNEITNTGG-LTRLKKVNWID 178

Query: 239 LHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
           L               L    ++     +        +        + +      
Sbjct: 179 LTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 41/173 (23%), Positives = 69/173 (39%), Gaps = 12/173 (6%)

Query: 123 VLSNNYIKE-FVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKL-NANT 180
           +     I + F  P   +  K +L    ++ +  +      +++     + I  L     
Sbjct: 3   IQRPTPINQVFPDPGLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLAGMQF 61

Query: 181 FRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLH 240
           F NL    L+L  N+IS++         + LE L +  NRL N+N        L  L+L 
Sbjct: 62  FTNLKE--LHLSHNQISDLSPLKDL---TKLEELSVNRNRLKNLNGI--PSACLSRLFLD 114

Query: 241 NNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
           NN +    +    HL NL+ +S+  NKL  I       +L  L+L  N +   
Sbjct: 115 NNELRDTDS--LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT 165

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 30/224 (13%), Positives = 81/224 (36%), Gaps = 12/224 (5%)

Query: 54  KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNYL 111
                 +G+  +  + +      +   N D++ +Q+L  +     ++ L +++N + +  
Sbjct: 20  NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS 79

Query: 112 ELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYN 171
            L  +T L+ + ++ N +K         + +L L NN +   + +L +   ++ L +  N
Sbjct: 80  PLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN 138

Query: 172 QISKLNA-NTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRN 230
           ++  +        L V  L L  N+I+             + ++DL   +  N       
Sbjct: 139 KLKSIVMLGFLSKLEV--LDLHGNEITNTGGLTR---LKKVNWIDLTGQKCVNEPVK--Y 191

Query: 231 LKKLKYL-YLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD 273
             +L     + + +  +I      +  +     +         +
Sbjct: 192 QPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDE 235

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 75.0 bits (185), Expect = 2e-16
 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 188 RLYLKFNKISEIHDFA-FNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIE 245
            L L  N++  I     F  L   L  L+L+ N+LT I    F     ++ L L  N I+
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPH-LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 246 FIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
            I N  F  L  LK+++L  N+++ +    F H   L+ LNL  N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 66.2 bits (162), Expect = 3e-13
 Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 5/106 (4%)

Query: 141 EKLDLSNNLISTINLN--LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKIS 197
            +L L++N +  I+ +       ++  L L  NQ++ +  N F    ++  L L  NKI 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 198 EIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNN 242
           EI +  F GL+  L+ L+L +N+++ +    F +L  L  L L +N
Sbjct: 92  EISNKMFLGLHQ-LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 63.1 bits (154), Expect = 4e-12
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 206 GLNSTLEFLDLENNRLTNI--NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISL 263
            +      L L +N L  I  +  F  L  L  L L  N +  I+ N FE   +++ + L
Sbjct: 26  DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85

Query: 264 SGNKLTRIPD--FIHNKRLSHLNLGYN 288
             NK+  I +  F+   +L  LNL  N
Sbjct: 86  GENKIKEISNKMFLGLHQLKTLNLYDN 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 76.3 bits (187), Expect = 7e-16
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 203 AFNGLNSTLEFLDLE-NNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKS 260
              G  + L  L +E    L ++  +  R L +L+ L +  + + F+  + F     L  
Sbjct: 26  HLPGAEN-LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 261 ISLSGNKLTRIP-DFIHNKRLSHLNLGYNFLN 291
           ++LS N L  +    +    L  L L  N L+
Sbjct: 85  LNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 69.8 bits (170), Expect = 1e-13
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 214 LDLENNRLTNINQCFRNLKKLKYLYLHNNN-IEFIQNNTFEHLVNLKSISLSGNKLTRIP 272
           L    +   +        + L  LY+ N   ++ ++      L  L+++++  + L  + 
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72

Query: 273 D--FIHNKRLSHLNLGYNFLNEL 293
              F    RLS LNL +N L  L
Sbjct: 73  PDAFHFTPRLSRLNLSFNALESL 95

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 64.0 bits (155), Expect = 1e-11
 Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 142 KLDLSNNLISTINLNLNNTYYIKDLILSYNQ-ISKLNANTFRNL-NVFRLYLKFNKISEI 199
            L  + +       +L     + +L +   Q +  L     R L  +  L +  + +  +
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 200 HDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNN 242
              AF+     L  L+L  N L +++        L+ L L  N
Sbjct: 72  APDAFHFTPR-LSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 75.3 bits (185), Expect = 3e-15
 Identities = 45/227 (19%), Positives = 89/227 (39%), Gaps = 15/227 (6%)

Query: 72  NGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKE 131
              +  L          +L +L  ++  +                +++     + +  + 
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKAL--SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314

Query: 132 FVIP---NRKHIEKLDLSNNLISTINL-NLNNTYYIKDLILSYNQISKLN--ANTFRNL- 184
             +           LD SNNL++     N  +   ++ LIL  NQ+ +L+  A     + 
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374

Query: 185 NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNL-KKLKYLYLHNNN 243
           ++ +L +  N +S            +L  L++ +N LT+    FR L  ++K L LH+N 
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI--FRCLPPRIKVLDLHSNK 432

Query: 244 IEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
           I+ I       L  L+ ++++ N+L  +PD  F     L  + L  N
Sbjct: 433 IKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 73.7 bits (181), Expect = 9e-15
 Identities = 41/269 (15%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 18  CSENVQISCILLMSAENEDNQIAELETANWSPEIQN-KLTTLFIGENHIHQIENL--NGF 74
              N ++S + L + E   N    +    W   +    ++ + +      +  +      
Sbjct: 216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL 275

Query: 75  RSILWLNMDSNLLQTLDSLPK------TMETLSVANNYLVNYLELNRMTSLKWIVLSNNY 128
           +++    + S++     S          ++  +V+   +V+ L  ++++    +  SNN 
Sbjct: 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 335

Query: 129 IKEF---VIPNRKHIEKLDLSNNLISTIN------LNLNNTYYIKDLILSYNQISK-LNA 178
           + +       +   +E L L  N +  ++        + +      L +S N +S     
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ---LDISQNSVSYDEKK 392

Query: 179 NTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYL 237
                  ++  L +  N +++     F  L   ++ LDL +N++ +I +    L+ L+ L
Sbjct: 393 GDCSWTKSLLSLNMSSNILTDT---IFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQEL 449

Query: 238 YLHNNNIEFIQNNTFEHLVNLKSISLSGN 266
            + +N ++ + +  F+ L +L+ I L  N
Sbjct: 450 NVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 69.1 bits (169), Expect = 3e-13
 Identities = 35/228 (15%), Positives = 82/228 (35%), Gaps = 15/228 (6%)

Query: 80  LNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKH 139
           L++ + L         T+  +    N  +  L+L   T++ +  +SN  ++  +      
Sbjct: 210 LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFD 269

Query: 140 IEKLDLSNNLISTINLNLNNTYY---------IKDLILSYNQISKLNANTFRNLNVFR-L 189
                L    I  +  ++              +     + +    ++      ++ F  L
Sbjct: 270 YSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHL 329

Query: 190 YLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQC---FRNLKKLKYLYLHNNNIEF 246
               N +++        L   LE L L+ N+L  +++       +K L+ L +  N++ +
Sbjct: 330 DFSNNLLTDTVFENCGHLTE-LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388

Query: 247 IQN-NTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
            +         +L S+++S N LT         R+  L+L  N +  +
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSI 436

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 68.7 bits (168), Expect = 4e-13
 Identities = 39/273 (14%), Positives = 83/273 (30%), Gaps = 18/273 (6%)

Query: 42  LETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLS 101
           L       E    L        HI    N      +         L+  +      +   
Sbjct: 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206

Query: 102 VANNYLVNYLELNRMTSL----KWIVLSNNYIKEFVIPNRKHIEKLDLSNNLI------S 151
                ++  L+ N   S           N++I+   +     +    +SN  +       
Sbjct: 207 SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR 266

Query: 152 TINLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNST 210
             + +  +   +    +  +      +  +    N+       +    +H    + + S 
Sbjct: 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI-SP 325

Query: 211 LEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNT--FEHLVNLKSISLSGNK 267
              LD  NN LT+   +   +L +L+ L L  N ++ +         + +L+ + +S N 
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385

Query: 268 LTRIP---DFIHNKRLSHLNLGYNFLNELILES 297
           ++      D    K L  LN+  N L + I   
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.2 bits (164), Expect = 1e-12
 Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 8/164 (4%)

Query: 138 KHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNK 195
           +    L++S N IS +  + + +   ++ LI+S+N+I  L+ + F+    +  L L  NK
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 196 ISEIHDFAFNGLNSTLEFLDLENNRLTNINQC--FRNLKKLKYLYLHNNNIEFIQNNTFE 253
           + +I   + +   + L+ LDL  N    +  C  F N+ +LK+L L   ++E        
Sbjct: 81  LVKI---SCHPTVN-LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 254 HLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILES 297
           HL   K + + G       D    +  +  +L   F        
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF 180

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.3 bits (154), Expect = 2e-11
 Identities = 31/250 (12%), Positives = 75/250 (30%), Gaps = 12/250 (4%)

Query: 53  NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL----PKTMETLSVANNYLV 108
           N    L +      + E+  G +     ++        +             ++  + + 
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198

Query: 109 NYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTY-YIKDLI 167
             LE N+ +    I+       +       +IE    S   I  +  +    Y  I ++ 
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258

Query: 168 LSYNQISKLNANTFRNLNVFRL-YLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-N 225
           L      +    +  +L    +  +  +       + +    S +   +   +    +  
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF-SNMNIKNFTVSGTRMVHM 317

Query: 226 QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD----FIHNKRLS 281
            C   +    +L   NN +         HL  L+++ L  N+L  +          K L 
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ 377

Query: 282 HLNLGYNFLN 291
            L++  N ++
Sbjct: 378 QLDISQNSVS 387

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.0 bits (153), Expect = 3e-11
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 2/89 (2%)

Query: 206 GLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264
            L+     L++  N ++ +      +L KL+ L + +N I+++  + F+    L+ + LS
Sbjct: 18  DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77

Query: 265 GNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
            NKL +I        L HL+L +N  + L
Sbjct: 78  HNKLVKIS-CHPTVNLKHLDLSFNAFDAL 105

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 33/252 (13%), Positives = 71/252 (28%), Gaps = 15/252 (5%)

Query: 54  KLTTLFIGENHIHQIENLNGF---RSILWLNMDSNLLQTLDSLPKT-METLSVANNYLVN 109
            L  L +  N    +     F     + +L + +  L+    LP   +    V       
Sbjct: 91  NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET 150

Query: 110 YLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILS 169
           Y E      L+     + +I          I  + +       ++         K     
Sbjct: 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210

Query: 170 YNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN------ 223
                        NL +  +   +N    I        ++T+ +  + N +L        
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV---WHTTVWYFSISNVKLQGQLDFRD 267

Query: 224 INQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLS 281
            +    +LK L    + ++   F Q+  +E   N+   + + +    +            
Sbjct: 268 FDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL 327

Query: 282 HLNLGYNFLNEL 293
           HL+   N L + 
Sbjct: 328 HLDFSNNLLTDT 339

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 57.6 bits (139), Expect = 2e-09
 Identities = 42/228 (18%), Positives = 82/228 (35%), Gaps = 22/228 (9%)

Query: 35  EDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENL-----NGFRSILWLNMDSNLLQT 89
            + ++               L  L I +                F ++   N   +  + 
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314

Query: 90  LDSL----PKTMETLSVANNYLVNYL--ELNRMTSLKWIVLSNNYIKE-----FVIPNRK 138
           +  L          L  +NN L + +      +T L+ ++L  N +KE      +    K
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374

Query: 139 HIEKLDLSNNLISTI--NLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKI 196
            +++LD+S N +S      + + T  +  L +S N ++           +  L L  NKI
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP-RIKVLDLHSNKI 433

Query: 197 SEIHDFAFNGLNSTLEFLDLENNRLTNINQC-FRNLKKLKYLYLHNNN 243
             I           L+ L++ +N+L ++    F  L  L+ ++LH N 
Sbjct: 434 KSIPKQVVKLEA--LQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 44/271 (16%), Positives = 85/271 (31%), Gaps = 41/271 (15%)

Query: 37  NQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLP 94
           N I+EL T++      +KL  L I  N I  ++       + + +L++  N L  +    
Sbjct: 31  NYISELWTSDILS--LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC-- 86

Query: 95  KTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEF----VIPNRKHIEKLDLSNNLI 150
                              +   +LK + LS N            N   ++ L LS   +
Sbjct: 87  -------------------HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127

Query: 151 STINLNL--NNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLN 208
              ++    +       L+L      K +    ++ N   L++ F    E H      + 
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187

Query: 209 STLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL 268
           +           +   N+C   L  L  L          Q N     + L +I  + N  
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLSILAKL----------QTNPKLSNLTLNNIETTWNSF 237

Query: 269 TRIPDFIHNKRLSHLNLGYNFLNELILESSI 299
            RI   + +  + + ++    L   +     
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 72.8 bits (179), Expect = 3e-15
 Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 188 RLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEF 246
            LYL  N+I+++    F+ L + L+ L L +N+L  +    F +L +L  L L  N +  
Sbjct: 44  ILYLHDNQITKLEPGVFDSLIN-LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 247 IQNNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFL 290
           + +  F+ LV+LK + +  NKLT +P        L+HL L  N L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 63.9 bits (156), Expect = 4e-12
 Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 6/129 (4%)

Query: 164 KDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT 222
           + L L  NQI+KL    F +L N+  LYL  N++  +    F+ L + L  LDL  N+LT
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL-TQLTVLDLGTNQLT 101

Query: 223 NI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKR 279
            + +  F  L  LK L++  N +  +     E L +L  ++L  N+L  IP   F     
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSS 160

Query: 280 LSHLNLGYN 288
           L+H  L  N
Sbjct: 161 LTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 60.5 bits (147), Expect = 5e-11
 Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 3/128 (2%)

Query: 141 EKLDLSNNLISTINLNL-NNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISE 198
           + L L +N I+ +   + ++   +K+L L  NQ+  L    F +L  +  L L  N+++ 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 199 IHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNL 258
           +    F+ L   L+ L +  N+LT + +    L  L +L L  N ++ I +  F+ L +L
Sbjct: 103 LPSAVFDRL-VHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161

Query: 259 KSISLSGN 266
               L GN
Sbjct: 162 THAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 235 KYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNE 292
           + LYLH+N I  ++   F+ L+NLK + L  N+L  +P   F    +L+ L+LG N L  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 293 L 293
           L
Sbjct: 103 L 103

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 74.8 bits (183), Expect = 4e-15
 Identities = 48/260 (18%), Positives = 92/260 (35%), Gaps = 15/260 (5%)

Query: 33  ENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDS 92
                 + +L  A+ + ++      +    +   +   L   R   W   DS   + L  
Sbjct: 295 RPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWC-RDSATDEQLFR 353

Query: 93  LPKTMETLSVANNYLVNYLELNRM-TSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLIS 151
              ++E  +V  + L +  EL  +    KW +L+   +   + P     E L   + L +
Sbjct: 354 CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 413

Query: 152 TINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTL 211
              +       ++   L  N + K+     R L+     L    ++ +           +
Sbjct: 414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLH-----LAHKDLTVLCHL---EQLLLV 465

Query: 212 EFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRI 271
             LDL +NRL  +      L+ L+ L   +N +E +      +L  L+ + L  N+L + 
Sbjct: 466 THLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQS 523

Query: 272 PDFIH---NKRLSHLNLGYN 288
                     RL  LNL  N
Sbjct: 524 AAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.9 bits (160), Expect = 3e-12
 Identities = 43/243 (17%), Positives = 82/243 (33%), Gaps = 15/243 (6%)

Query: 24  ISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMD 83
           +          +     +L     S E    L +       + ++E  N +   L + + 
Sbjct: 333 LLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCL-LTIILL 391

Query: 84  SNLLQTLDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKL 143
              L  L    +T++  S      +  ++  R   L  +          +      +  L
Sbjct: 392 MRALDPLLYEKETLQYFS-----TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL 446

Query: 144 DLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFA 203
            L++  ++ +  +L     +  L LS+N++  L         +  L    N +  +   A
Sbjct: 447 HLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 505

Query: 204 FNGLNSTLEFLDLENNRLTNIN--QCFRNLKKLKYLYLHNNNI---EFIQNNTFEHLVNL 258
                  L+ L L NNRL      Q   +  +L  L L  N++   E IQ    E L ++
Sbjct: 506 NL---PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562

Query: 259 KSI 261
            SI
Sbjct: 563 SSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.5 bits (159), Expect = 4e-12
 Identities = 33/247 (13%), Positives = 80/247 (32%), Gaps = 11/247 (4%)

Query: 47  WSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNY 106
            +P+ +N+ + +++ +     + +     +   +   S+  +    L    E     +  
Sbjct: 288 RTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSAT 347

Query: 107 LVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDL 166
                      S++   +  + ++          E       +I  +   L+   Y K+ 
Sbjct: 348 DEQLFRCE--LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR-ALDPLLYEKET 404

Query: 167 ILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ 226
           +  ++ +  ++      L+  R            ++A          L L +  LT +  
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADV------RVLHLAHKDLTVLC- 457

Query: 227 CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLG 286
               L  + +L L +N +  +       L  L+ +  S N L  +    +  RL  L L 
Sbjct: 458 HLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDGVANLPRLQELLLC 516

Query: 287 YNFLNEL 293
            N L + 
Sbjct: 517 NNRLQQS 523

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.2 bits (183), Expect = 7e-15
 Identities = 69/282 (24%), Positives = 107/282 (37%), Gaps = 48/282 (17%)

Query: 54  KLTTLFIGENHIH-QIENLNGFRSILWLNMDSNLL-----QTLDSLPKTMETLSVANNYL 107
           +L  L I  N     I  L   +S+ +L++  N         L     T+  L ++ N+ 
Sbjct: 248 ELKLLNISSNQFVGPIPPLP-LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306

Query: 108 VNYL--ELNRMTSLKWIVLSNNY----IKEFVIPNRKHIEKLDLSNNLIS-TINLNL-NN 159
              +       + L+ + LS+N     +    +   + ++ LDLS N  S  +  +L N 
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366

Query: 160 TYYIKDLILSYNQIS-----KLNANTFRNLNVFRLYLKFNKIS-------------EIHD 201
           +  +  L LS N  S      L  N    L    LYL+ N  +                 
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQE--LYLQNNGFTGKIPPTLSNCSELVSLH 424

Query: 202 FAFNGLN----------STLEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNIEFIQNN 250
            +FN L+          S L  L L  N L   I Q    +K L+ L L  N++     +
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

Query: 251 TFEHLVNLKSISLSGNKLT-RIPDFIHN-KRLSHLNLGYNFL 290
              +  NL  ISLS N+LT  IP +I   + L+ L L  N  
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 51/287 (17%), Positives = 105/287 (36%), Gaps = 49/287 (17%)

Query: 54  KLTTLFIGENHIH---QIENLNGFRSILWLNMDSNLL--------QTLDSLPKTMETLSV 102
            L  L +  N +    ++       S+  L++ +N +           D   + ++ L++
Sbjct: 127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE-LKHLAI 185

Query: 103 ANNYLVNYLELNRMTSLKWIVLSNNYIKEFV--IPNRKHIEKLDLSNNLIS-TINLNLNN 159
           + N +   ++++R  +L+++ +S+N     +  + +   ++ LD+S N +S   +  ++ 
Sbjct: 186 SGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIST 245

Query: 160 TYYIKDLILSYNQIS-KLNANTFRNLNVFRLYLKFNKIS--------------EIHDFAF 204
              +K L +S NQ    +     ++L    L L  NK +                 D + 
Sbjct: 246 CTELKLLNISSNQFVGPIPPLPLKSLQY--LSLAENKFTGEIPDFLSGACDTLTGLDLSG 303

Query: 205 NGLN----------STLEFLDLENNRLTNI--NQCFRNLKKLKYLYLHNNNIE-FIQNNT 251
           N             S LE L L +N  +          ++ LK L L  N     +  + 
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363

Query: 252 FEHLVNLKSISLSGNKLT-RIPDFIHN---KRLSHLNLGYNFLNELI 294
                +L ++ LS N  +  I   +       L  L L  N     I
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.4 bits (168), Expect = 7e-13
 Identities = 59/280 (21%), Positives = 111/280 (39%), Gaps = 38/280 (13%)

Query: 48  SPEIQN--KLTTLFIGENHIH-QIENLNGFRSILWLNMDSNLLQ-------TLDSLPKTM 97
           S  + +   L +LF+  +HI+  +       S+  L++  N L        +L S    +
Sbjct: 70  SSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG-L 128

Query: 98  ETLSVANNYLVNYLE---LNRMTSLKWIVLSNNYI------KEFVIPNRKHIEKLDLSNN 148
           + L+V++N L    +     ++ SL+ + LS N I         +      ++ L +S N
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188

Query: 149 LIS-TINL-NLNNTYYIKDLILSYNQIS-KLNANTFRNL-NVFRLYLKFNKIS-EIHDFA 203
            IS  +++    N   ++ L +S N  S  +      +   +  L +  NK+S +     
Sbjct: 189 KISGDVDVSRCVN---LEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAI 243

Query: 204 FNGLNSTLEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNIE-FIQNNTFEHLVNLKSI 261
                + L+ L++ +N+    I      LK L+YL L  N     I +        L  +
Sbjct: 244 ST--CTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299

Query: 262 SLSGNKLT-RIPDFIHN-KRLSHLNLGYNFLNELILESSI 299
            LSGN     +P F  +   L  L L  N  +  +   ++
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 57/264 (21%), Positives = 102/264 (38%), Gaps = 25/264 (9%)

Query: 48  SPEIQN--KLTTLFIGENHIH-QI-ENLNGFRSILWLNMDSNLL-----QTLDSLPKTME 98
            P + N  +L +L +  N++   I  +L     +  L +  N+L     Q L  +   +E
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT-LE 469

Query: 99  TLSVANNYLVNYL--ELNRMTSLKWIVLSNNYIKEFVIP----NRKHIEKLDLSNNLIS- 151
           TL +  N L   +   L+  T+L WI LSNN +    IP      +++  L LSNN  S 
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG-EIPKWIGRLENLAILKLSNNSFSG 528

Query: 152 TINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKIS-EIHDFAFNGLNST 210
            I   L +   +  L L+ N  +                +  N I+ + + +  N     
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ---SGKIAANFIAGKRYVYIKNDGMKK 585

Query: 211 LEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT 269
                          ++    L       + +       + TF++  ++  + +S N L+
Sbjct: 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645

Query: 270 -RIPDFIHN-KRLSHLNLGYNFLN 291
             IP  I +   L  LNLG+N ++
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDIS 669

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 30/169 (17%), Positives = 62/169 (36%), Gaps = 38/169 (22%)

Query: 136 NRKHIEKLDLSNN----LISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYL 191
               +  +DLS+       S ++ +L +   ++ L LS + I+                 
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN----------------- 90

Query: 192 KFNKISEIHDFAFNGLNSTLEFLDLENNRLTN---INQCFRNLKKLKYLYLHNNNIEF-I 247
                  +  F     +++L  LDL  N L+          +   LK+L + +N ++F  
Sbjct: 91  -----GSVSGF---KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142

Query: 248 QNNTFEHLVNLKSISLSGNKLT-RIPDFIHN----KRLSHLNLGYNFLN 291
           + +    L +L+ + LS N ++               L HL +  N ++
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 54/264 (20%), Positives = 96/264 (36%), Gaps = 50/264 (18%)

Query: 53  NKLTTLFIGENHIH-QI-ENLNGFRSILWLNMDSNLL-----QTLDSLPKTMETLSVANN 105
             L TL +  N +  +I   L+   ++ W+++ +N L     + +  L   +  L ++NN
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN-LAILKLSNN 524

Query: 106 YLVNYL--ELNRMTSLKWIVLSNNYI-----------------------KEFVIPNRKHI 140
                +  EL    SL W+ L+ N                         +   I N    
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584

Query: 141 EKLDLSNNLIS---TINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFR-LYLKFNKI 196
           ++   + NL+      +  LN         ++        + TF N      L + +N +
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644

Query: 197 S-----EIHDFAFNGLNSTLEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNIEFIQNN 250
           S     EI      G    L  L+L +N ++ +I     +L+ L  L L +N ++     
Sbjct: 645 SGYIPKEI------GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698

Query: 251 TFEHLVNLKSISLSGNKLT-RIPD 273
               L  L  I LS N L+  IP+
Sbjct: 699 AMSALTMLTEIDLSNNNLSGPIPE 722

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 74.1 bits (182), Expect = 7e-15
 Identities = 47/235 (20%), Positives = 92/235 (39%), Gaps = 15/235 (6%)

Query: 66  HQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLEL--NRMTSLKWIV 123
             +E LN +   +   +D       ++  K++    V N   +   E   +    +   +
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335

Query: 124 LSNNYIKEFVIP---NRKHIEKLDLSNNLISTINL-NLNNTYYIKDLILSYNQISKLNAN 179
           LS +      +    +      L+ + N+ +       +    ++ LIL  N +      
Sbjct: 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395

Query: 180 TFRNLNVFRLYLKFNKISEIHDFAFNGL---NSTLEFLDLENNRLTNINQCFRNL-KKLK 235
                N+  L      ++ ++  A++       ++  L+L +N LT     FR L  K+K
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS--VFRCLPPKVK 453

Query: 236 YLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
            L LHNN I  I  +   HL  L+ ++++ N+L  +PD  F     L ++ L  N
Sbjct: 454 VLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 71.8 bits (176), Expect = 4e-14
 Identities = 39/234 (16%), Positives = 93/234 (39%), Gaps = 24/234 (10%)

Query: 54  KLTTLFIGENHIHQIENLNGF-------RSILWLNMDSNLLQTL-----DSLPK-TMETL 100
            +  L I    I +  +   F       +S++  ++ + +             +  ++ L
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 101 SVANNYLVNYLELNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLNL 157
           S+++   ++ +     +S  ++  + N   +         K ++ L L  N +       
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA 396

Query: 158 NNTYYIKDLILSYNQISKLNANTFRNL-----NVFRLYLKFNKISEIHDFAFNGLNSTLE 212
             T  +  L      ++ LN++ +        ++  L L  N ++      F  L   ++
Sbjct: 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS---VFRCLPPKVK 453

Query: 213 FLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN 266
            LDL NNR+ +I +   +L+ L+ L + +N ++ + +  F+ L +L+ I L  N
Sbjct: 454 VLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.4 bits (154), Expect = 3e-11
 Identities = 32/268 (11%), Positives = 76/268 (28%), Gaps = 19/268 (7%)

Query: 37  NQIAELE----TANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDS 92
            +  +L+           I   L +  I       ++  N     L  + +S     ++ 
Sbjct: 156 AKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM 215

Query: 93  LPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLIST 152
               +  L ++N  L N     R+ +    +     +    + +      ++ +      
Sbjct: 216 SVNALGHLQLSNIKL-NDENCQRLMTFLSELTRGPTLLNVTLQH------IETTWKCSVK 268

Query: 153 INLNLNNTY----YIKDLILSYNQISKLNANTFRNLNVFRL-YLKFNKISEIHDFAFNGL 207
           +             I +L ++     +    +   L    + ++K        +  ++  
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328

Query: 208 NSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN 266
            + +    L  +    I   C  +     +L    N            L  L+++ L  N
Sbjct: 329 -AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387

Query: 267 KLTRIPD-FIHNKRLSHLNLGYNFLNEL 293
            L       +  K +S L      LN L
Sbjct: 388 GLKNFFKVALMTKNMSSLETLDVSLNSL 415

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.2 bits (151), Expect = 5e-11
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 206 GLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264
            L    + L L  N ++ +       L +L+ L L +N I  +  + F    +L+ + +S
Sbjct: 49  DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108

Query: 265 GNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
            N+L  I        L HL+L +N  + L
Sbjct: 109 HNRLQNIS-CCPMASLRHLDLSFNDFDVL 136

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 59.1 bits (143), Expect = 6e-10
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 18/281 (6%)

Query: 19  SENVQISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSIL 78
             ++Q+S I L     +       E       +   L  +        ++      R + 
Sbjct: 220 LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279

Query: 79  WLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRK 138
           +LN+ +  +       +   + +   + ++ +++       K  +        + +    
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEAL--------YSVFAEM 331

Query: 139 HIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKIS 197
           +I+ L + ++      +   +      L  + N  +         L  +  L L+ N + 
Sbjct: 332 NIKMLSI-SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

Query: 198 EIHDFAFNGLNST-LEFLDLENNRLTNI--NQCFRNLKKLKYLYLHNNNIEFIQNNTFEH 254
                A    N + LE LD+  N L +   ++     + +  L L +N +     + F  
Sbjct: 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML---TGSVFRC 447

Query: 255 LV-NLKSISLSGNKLTRIPDFIHN-KRLSHLNLGYNFLNEL 293
           L   +K + L  N++  IP  + + + L  LN+  N L  +
Sbjct: 448 LPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSV 488

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.4 bits (136), Expect = 5e-09
 Identities = 50/273 (18%), Positives = 93/273 (34%), Gaps = 27/273 (9%)

Query: 55  LTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTL-----DSLPKTMETLSVANNYL 107
              L + +N I ++    ++    +  L +  N +++L           +E L V++N L
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD-LEYLDVSHNRL 112

Query: 108 VNYLELNRMTSLKWIVLSNNYIKEF----VIPNRKHIEKLDLSNNLISTINLN--LNNTY 161
            N +    M SL+ + LS N            N   +  L LS      ++L    +   
Sbjct: 113 QN-ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL 171

Query: 162 YIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRL 221
               L L    I      + +  N   L+L F+  S         +N  L  L L N +L
Sbjct: 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN-ALGHLQLSNIKL 230

Query: 222 TNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLS 281
            N   C R +  L  L      +             L+ I  +     ++  F   + + 
Sbjct: 231 -NDENCQRLMTFLSELTRGPTLLNVT----------LQHIETTWKCSVKLFQFFWPRPVE 279

Query: 282 HLNLGYNFLNELILESSIVENEIIDQNMLFNSN 314
           +LN+    + E I       +E   ++++    
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHV 312

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 26/230 (11%)

Query: 35  EDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENL-----NGFRSILWLNMDSNLLQT 89
            +  I E          +  L +L I                + F  +    +  +    
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 90  L----DSLPKTMETLSVANNYLVNYLE--LNRMTSLKWIVLSNNYIKE-----FVIPNRK 138
           +       P +   L+   N   + +    + +  L+ ++L  N +K       +  N  
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403

Query: 139 HIEKLDLSNNLISTI--NLNLNNTYYIKDLILSYNQISKLNANTFRNL--NVFRLYLKFN 194
            +E LD+S N +++   +        I  L LS N ++      FR L   V  L L  N
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS---VFRCLPPKVKVLDLHNN 460

Query: 195 KISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNN 243
           +I  I       L + L+ L++ +N+L ++    F  L  L+Y++LH+N 
Sbjct: 461 RIMSIPK-DVTHLQA-LQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 47/234 (20%), Positives = 86/234 (36%), Gaps = 11/234 (4%)

Query: 93  LPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSN 147
           LP   + LS++ N +  +   +++ ++ L+ + LS+N I+     V    + +E LD+S+
Sbjct: 50  LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109

Query: 148 NLISTINL-NLNNTYYIKDLILSYNQISKL-NANTFRNL-NVFRLYLKFNKISEIHDFAF 204
           N +  I+   + +   ++ L LS+N    L     F NL  +  L L   K  ++     
Sbjct: 110 NRLQNISCCPMAS---LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166

Query: 205 NGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264
             L+ +   LDL +  +         +     L+L  +            +  L  + LS
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 265 GNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVME 318
             KL           LS L  G   LN  +          +     F    V  
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 70.5 bits (173), Expect = 2e-14
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 4/106 (3%)

Query: 188 RLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEF 246
            L L+ N +  + +  F+ L S L  L L  N+L ++ N  F  L  L YL L  N ++ 
Sbjct: 32  YLDLETNSLKSLPNGVFDELTS-LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 247 IQNNTFEHLVNLKSISLSGNKLTRIPDFIHNK--RLSHLNLGYNFL 290
           + N  F+ L  LK ++L+ N+L  +PD + +K  +L  L L  N L
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 68.9 bits (169), Expect = 4e-14
 Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 5/129 (3%)

Query: 164 KDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT 222
             L L  N +  L    F  L ++ +LYL  NK+  + +  FN L ++L +L+L  N+L 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL-TSLTYLNLSTNQLQ 89

Query: 223 NI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKR 279
           ++ N  F  L +LK L L+ N ++ + +  F+ L  LK + L  N+L  +PD  F     
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149

Query: 280 LSHLNLGYN 288
           L ++ L  N
Sbjct: 150 LQYIWLHDN 158

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.4 bits (168), Expect = 5e-14
 Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 9/168 (5%)

Query: 124 LSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNA-NTFR 182
           L  +            +  + L+N  ++ +   +   + IKDL ++    +  N  +   
Sbjct: 30  LGQSSTANITEAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLS 88

Query: 183 NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYL-H 240
           NL   RL +    ++       +GL S L  LD+ ++   +        L K+  + L +
Sbjct: 89  NLE--RLRIMGKDVTSDKIPNLSGLTS-LTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145

Query: 241 NNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYN 288
           N  I  I     + L  LKS+++  + +          +L+ L     
Sbjct: 146 NGAITDIMP--LKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.4 bits (160), Expect = 6e-13
 Identities = 25/170 (14%), Positives = 58/170 (34%), Gaps = 6/170 (3%)

Query: 104 NNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYY 162
                  +   +M SL +I L+N  + +   I    +I+ L ++N   +  N  ++    
Sbjct: 31  GQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSN 89

Query: 163 IKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRL 221
           ++ L +    ++         L ++  L +  +   +      N L   +  +DL  N  
Sbjct: 90  LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK-VNSIDLSYNGA 148

Query: 222 TNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRI 271
                  + L +LK L +  + +   +    E    L  +      +   
Sbjct: 149 ITDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 27/172 (15%), Positives = 57/172 (33%), Gaps = 12/172 (6%)

Query: 126 NNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKL-NANTFRN 183
           +           K      L  +  + I    +N+   +  + L+   ++ L       N
Sbjct: 11  SQDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNS---LTYITLANINVTDLTGIEYAHN 67

Query: 184 LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNN 242
           +    L +     +  +  +     S LE L +    +T+        L  L  L + ++
Sbjct: 68  IKD--LTINNIHATNYNPIS---GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 243 NIEFIQNNTFEHLVNLKSISLSGN-KLTRIPDFIHNKRLSHLNLGYNFLNEL 293
             +         L  + SI LS N  +T I        L  LN+ ++ +++ 
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY 174

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 6e-09
 Identities = 28/194 (14%), Positives = 67/194 (34%), Gaps = 27/194 (13%)

Query: 54  KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTMETLSVANNYLVNYL 111
                 +G++    I       S+ ++ + +  +  L  +     ++ L++ N +  NY 
Sbjct: 24  AYLNGLLGQSSTANITEAQ-MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN 82

Query: 112 ELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYN 171
            ++ +++L+ + +    +    IPN   +  L                      L +S++
Sbjct: 83  PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL--------------------TLLDISHS 122

Query: 172 QISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRN 230
                       L  V  + L +N    I D         L+ L+++ + + +      +
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYN--GAITDIMPLKTLPELKSLNIQFDGVHDYR-GIED 179

Query: 231 LKKLKYLYLHNNNI 244
             KL  LY  +  I
Sbjct: 180 FPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 4/84 (4%)

Query: 214 LDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD 273
             L  +   NI +    +  L Y+ L N N+  +     E+  N+K ++++    T    
Sbjct: 28  GLLGQSSTANITEA--QMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP 83

Query: 274 FIHNKRLSHLNLGYNFLNELILES 297
                 L  L +    +    + +
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPN 107

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 65.4 bits (160), Expect = 4e-13
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 4/104 (3%)

Query: 188 RLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEF 246
           RL L+ NK+  +    F+ L   L  L L  N++ ++ +  F  L KL  LYLH N ++ 
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQ-LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 247 IQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
           + N  F+ L  LK ++L  N+L  +PD  F     L  + L  N
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 3/103 (2%)

Query: 166 LILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI 224
           L L  N++  L    F  L  + +L L  N+I  + D  F+ L + L  L L  N+L ++
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL-TKLTILYLHENKLQSL 91

Query: 225 -NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN 266
            N  F  L +LK L L  N ++ + +  F+ L +L+ I L  N
Sbjct: 92  PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 58.0 bits (141), Expect = 2e-10
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 206 GLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264
           G+ S+   L+LE+N+L ++ +  F  L +L  L L  N I+ + +  F+ L  L  + L 
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84

Query: 265 GNKLTRIPDFIHNK--RLSHLNLGYNFL 290
            NKL  +P+ + +K  +L  L L  N L
Sbjct: 85  ENKLQSLPNGVFDKLTQLKELALDTNQL 112

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.6 bits (165), Expect = 5e-13
 Identities = 42/249 (16%), Positives = 88/249 (35%), Gaps = 26/249 (10%)

Query: 70  NLNGFRSILWLNMDSNLLQTLDSLPK------TMETLSVANNYLVNYLELNRMTSLKWIV 123
             +    +  ++ +++L Q  D +        T+    + +  L   L +  ++ L+ + 
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 124 LSNNYI-----KEFVIPNRKHIEKLDLSNNLISTINLNLNNTY-----YIKDLILSYNQI 173
           L N  +        +      +  L+L N   +T +  L          +K L ++    
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161

Query: 174 SKLNANTFRNLNVFR-LYLKFNKIS---EIHDFAFNGLNSTLEFLDLENNRLTNIN---- 225
              +    R       L L  N       +          TL+ L L N  +   +    
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221

Query: 226 QCFRNLKKLKYLYLHNNNI-EFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLN 284
                  +L+ L L +N++ +     + +    L S++LS   L ++P  +   +LS L+
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL-PAKLSVLD 280

Query: 285 LGYNFLNEL 293
           L YN L+  
Sbjct: 281 LSYNRLDRN 289

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.7 bits (160), Expect = 2e-12
 Identities = 42/281 (14%), Positives = 83/281 (29%), Gaps = 36/281 (12%)

Query: 27  ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNL 86
            LL   + E +     +        +  +    I    +     + G   +  L +++  
Sbjct: 47  YLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106

Query: 87  L------QTLDSLPKTMETLSVANNYLVNY------LELNRMTSLKWIVLSNNYIKEFVI 134
           +        L++    +  L++ N            L+      LK + ++  +   F  
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 135 P---NRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYL 191
                   +  LDLS+N        ++         L   +   L     RN        
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISA--------LCPLKFPTLQVLALRNAG------ 212

Query: 192 KFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI--NQCFRNLKKLKYLYLHNNNIEFIQN 249
                S +           L+ LDL +N L +           +L  L L    ++ +  
Sbjct: 213 -METPSGVCSALAAARVQ-LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270

Query: 250 NTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFL 290
                   L  + LS N+L R P      ++ +L+L  N  
Sbjct: 271 GLPA---KLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.5 bits (118), Expect = 5e-07
 Identities = 30/179 (16%), Positives = 63/179 (35%), Gaps = 29/179 (16%)

Query: 55  LTTLFIGENHIHQI--ENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLE 112
           L  L I + H      E +  F ++  L++  N                     L++ L 
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG--------------ERGLISALC 196

Query: 113 LNRMTSLKWIVLSNNYIKEF------VIPNRKHIEKLDLSNNLISTI--NLNLNNTYYIK 164
             +  +L+ + L N  ++        +   R  ++ LDLS+N +       + +    + 
Sbjct: 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256

Query: 165 DLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN 223
            L LS+  + ++       L+V  L L +N++              +  L L+ N   +
Sbjct: 257 SLNLSFTGLKQVPKGLPAKLSV--LDLSYNRLDRNPSPDEL---PQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 33/201 (16%), Positives = 61/201 (30%), Gaps = 23/201 (11%)

Query: 109 NYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLIL 168
            + ++ +  SLK + +    I   ++     +  L +S        L L N      L +
Sbjct: 60  QFTDIIKSLSLKRLTVRAARIPSRILFG--ALRVLGISGLQ----ELTLEN------LEV 107

Query: 169 SYNQISKLNANTFRNLNVFRLY-LKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQ 226
           +      L   T  +LN+  L  + +             L   L+ L +      N   +
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167

Query: 227 CFRNLKKLKYLYLHNNNI----EFIQNNTFEHLVNLKSISLSGNKLTRIPD-----FIHN 277
             R    L  L L +N        I          L+ ++L    +              
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 278 KRLSHLNLGYNFLNELILESS 298
            +L  L+L +N L +     S
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPS 248

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 44/259 (16%), Positives = 90/259 (34%), Gaps = 28/259 (10%)

Query: 52  QNKLTTLF--IGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVN 109
              L      + +   H   + N + S  W   +SN  Q      + ++  +       +
Sbjct: 22  STALRPYHDVLSQWQRHYNADRNRWHSA-WRQANSNNPQIETRTGRALKATA-------D 73

Query: 110 YLELNRMTSLKWIVLSNNYIKEF--VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLI 167
            LE         + L +  + +F        H++ + +    +  +   +     ++ L 
Sbjct: 74  LLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLT 133

Query: 168 LSYNQISKLNANTFRNL-NVFRLYL-KFNKISEI--------HDFAFNGLNSTLEFLDLE 217
           L+ N +  L   +  +L  +  L +    +++E+              GL + L+ L LE
Sbjct: 134 LARNPLRAL-PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN-LQSLRLE 191

Query: 218 NNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSG-NKLTRIPDFIH 276
              + ++     NL+ LK L + N+ +  +      HL  L+ + L G   L   P    
Sbjct: 192 WTGIRSLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFG 250

Query: 277 N-KRLSHLNL-GYNFLNEL 293
               L  L L   + L  L
Sbjct: 251 GRAPLKRLILKDCSNLLTL 269

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.1 bits (136), Expect = 4e-09
 Identities = 23/195 (11%), Positives = 60/195 (30%), Gaps = 16/195 (8%)

Query: 112 ELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYN 171
             +  +  + +    +             ++   ++           N+   +    +  
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 172 QISKLNAN--TFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFR 229
            +                 L L+   + +  D AF  L+  L+ + ++   L  +    +
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR-LSH-LQHMTIDAAGLMELPDTMQ 124

Query: 230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSG-NKLTRIPDFIHN----------K 278
               L+ L L  N +  +   +   L  L+ +S+    +LT +P+ + +           
Sbjct: 125 QFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 279 RLSHLNLGYNFLNEL 293
            L  L L +  +  L
Sbjct: 184 NLQSLRLEWTGIRSL 198

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 43/268 (16%), Positives = 83/268 (30%), Gaps = 55/268 (20%)

Query: 52  QNKLTTLFIGENHIHQI-ENLNGFRSILWLNMDSNLLQTLDSLPKTM------ETLSVAN 104
           Q     L +    + Q  +       +  + +D+  L     LP TM      ETL++A 
Sbjct: 80  QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM---ELPDTMQQFAGLETLTLAR 136

Query: 105 NYLVNYL--ELNRMTSLKWIVLS-NNYIKEF-----------VIPNRKHIEKLDLSNNLI 150
           N L   L   +  +  L+ + +     + E                  +++ L L    I
Sbjct: 137 NPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195

Query: 151 STINLNLNNTYYIKDLILSYNQISKLNAN--TFRNLNVFRLYLKFNKISEIHDFAFNGLN 208
            ++  ++ N   +K L +  + +S L         L    L      +       F G  
Sbjct: 196 RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR-GCTALRNYPP-IFGGRA 253

Query: 209 STLEFLDLEN-NRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNK 267
             L+ L L++ + L  +      L +L+ L L                            
Sbjct: 254 P-LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC-----------------------VN 289

Query: 268 LTRIPDFIHN-KRLSHLNLGYNFLNELI 294
           L+R+P  I        + +  +   +L 
Sbjct: 290 LSRLPSLIAQLPANCIILVPPHLQAQLD 317

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 10/136 (7%)

Query: 143 LDLSNNLISTINLNLNNTYYIKDLILSYNQISKLN--ANTFRNLNVFRLYLKFNKISEIH 200
           + L+  LI        N    ++L L   +I  +     T    +   +    N+I ++ 
Sbjct: 2   VKLTAELIEQA-AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDA--IDFSDNEIRKLD 58

Query: 201 DFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQN-NTFEHLVNL 258
            F    L   L+ L + NNR+  I     + L  L  L L NN++  + + +    L +L
Sbjct: 59  GFP---LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115

Query: 259 KSISLSGNKLTRIPDF 274
             + +  N +T    +
Sbjct: 116 TYLCILRNPVTNKKHY 131

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 56.6 bits (137), Expect = 6e-10
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 211 LEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTR 270
              LDL   ++  I      L +   +   +N I  +    F  L  LK++ ++ N++ R
Sbjct: 21  DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICR 78

Query: 271 IPDFIHN--KRLSHLNLGYNFLNEL 293
           I + +      L+ L L  N L EL
Sbjct: 79  IGEGLDQALPDLTELILTNNSLVEL 103

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 32/130 (24%), Positives = 47/130 (36%), Gaps = 7/130 (5%)

Query: 124 LSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKL-NANTF 181
           L+   I++     N     +LDL    I  I            +  S N+I KL      
Sbjct: 4   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 63

Query: 182 RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN--QCFRNLKKLKYLYL 239
           R L    L +  N+I  I +     L   L  L L NN L  +       +LK L YL +
Sbjct: 64  RRLKT--LLVNNNRICRIGEGLDQALPD-LTELILTNNSLVELGDLDPLASLKSLTYLCI 120

Query: 240 HNNNIEFIQN 249
             N +   ++
Sbjct: 121 LRNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 214 LDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD 273
           + L    +    Q + N  + + L L    I  I+N     L    +I  S N++ ++  
Sbjct: 2   VKLTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLDG 59

Query: 274 FIHNKRLSHLNLGYNFLNEL 293
           F   +RL  L +  N +  +
Sbjct: 60  FPLLRRLKTLLVNNNRICRI 79

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.4 bits (121), Expect = 9e-08
 Identities = 19/128 (14%), Positives = 49/128 (38%), Gaps = 8/128 (6%)

Query: 58  LFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTM---ETLSVANNYLVNYLELN 114
           + +    I Q            L++    +  +++L  T+   + +  ++N +       
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 61

Query: 115 RMTSLKWIVLSNNYIK---EFVIPNRKHIEKLDLSNNLISTIN--LNLNNTYYIKDLILS 169
            +  LK ++++NN I    E +      + +L L+NN +  +     L +   +  L + 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 170 YNQISKLN 177
            N ++   
Sbjct: 122 RNPVTNKK 129

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 12/143 (8%)

Query: 165 DLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNS--TLEFLDLENNRLT 222
           +L      I K++A          L L  N I +I     + L+    L  L L  N + 
Sbjct: 29  ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-----SSLSGMENLRILSLGRNLIK 83

Query: 223 NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIH---NKR 279
            I         L+ L++  N I  +     E LVNL+ + +S NK+T   +        +
Sbjct: 84  KIENLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141

Query: 280 LSHLNLGYNFLNELILESSIVEN 302
           L  L L  N L     E++    
Sbjct: 142 LEDLLLAGNPLYNDYKENNATSE 164

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 30/151 (19%), Positives = 69/151 (45%), Gaps = 8/151 (5%)

Query: 36  DNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQT---LDS 92
              I  +E  + +         L +  N+I +I +L+G  ++  L++  NL++    LD+
Sbjct: 31  HGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDA 90

Query: 93  LPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEF----VIPNRKHIEKLDLSNN 148
           +  T+E L ++ N + +   + ++ +L+ + +SNN I  +     +     +E L L+ N
Sbjct: 91  VADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

Query: 149 LIST-INLNLNNTYYIKDLILSYNQISKLNA 178
            +      N   + Y  +++     + KL+ 
Sbjct: 151 PLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 41/192 (21%), Positives = 87/192 (45%), Gaps = 20/192 (10%)

Query: 112 ELNRMTSLKWIVLSNNYIKEFVIP----NRKHIEKLDLSNNLIS-TINLNLNNTYYIKDL 166
            + ++T L ++ +++  +    IP      K +  LD S N +S T+  ++++   +  +
Sbjct: 96  AIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 167 ILSYNQISKLNANTFRNL--NVFRLYLKFNKIS-EI-HDFAFNGLNSTLEFLDLENNRLT 222
               N+IS    +++ +       + +  N+++ +I   FA    N  L F+DL  N L 
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA----NLNLAFVDLSRNMLE 210

Query: 223 -NINQCFRNLKKLKYLYLHNNNIEF-IQNNTFEHLVNLKSISLSGNKLT-RIPDFIHN-K 278
            + +  F + K  + ++L  N++ F +         NL  + L  N++   +P  +   K
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 279 RLSHLNLGYNFL 290
            L  LN+ +N L
Sbjct: 269 FLHSLNVSFNNL 280

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 61.0 bits (149), Expect = 7e-11
 Identities = 39/207 (18%), Positives = 80/207 (38%), Gaps = 25/207 (12%)

Query: 98  ETLSVANNYLVNYL--ELNRMTSLKWIVLSNNYIKEFVIP----NRKHIEKLDLSNNLIS 151
             L + +  +   +   L+++ +L  +  S N +    +P    +  ++  +    N IS
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGTLPPSISSLPNLVGITFDGNRIS 162

Query: 152 -TINLNL-NNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKIS-EIHDFAFNGLN 208
             I  +  + +     + +S N+++     TF NLN+  + L  N +  +      +  +
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS--D 220

Query: 209 STLEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNI-----EFIQNNTFEHLVNLKSIS 262
              + + L  N L  ++ +     K L  L L NN I     + +       L  L S++
Sbjct: 221 KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQ-----LKFLHSLN 274

Query: 263 LSGNKLT-RIPDFIHNKRLSHLNLGYN 288
           +S N L   IP   + +R        N
Sbjct: 275 VSFNNLCGEIPQGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 36/197 (18%), Positives = 70/197 (35%), Gaps = 24/197 (12%)

Query: 112 ELNRMTSLKWIVLSNNYIK-EFVIP----NRKHIEKLDLS--NNLISTINLNLNNTYYIK 164
              +   +  + LS   +   + IP    N  ++  L +   NNL+  I   +     + 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 165 DLILSYNQISKLNANTFRNL-NVFRLYLKFNKIS-----EIHDFAFNGLNSTLEFLDLEN 218
            L +++  +S    +    +  +  L   +N +S      I           L  +  + 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI------SSLPNLVGITFDG 158

Query: 219 NRLT-NINQCFRNLKKL-KYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT-RIPDFI 275
           NR++  I   + +  KL   + +  N +      TF +L NL  + LS N L        
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLF 217

Query: 276 -HNKRLSHLNLGYNFLN 291
             +K    ++L  N L 
Sbjct: 218 GSDKNTQKIHLAKNSLA 234

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 55.8 bits (135), Expect = 8e-10
 Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 4/103 (3%)

Query: 189 LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQ 248
           L L  ++ +E            LEFL   N  LT+I      L KLK L L +N +    
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSDNRVSGGL 80

Query: 249 NNTFEHLVNLKSISLSGNKLTRIPDFIH---NKRLSHLNLGYN 288
               E   NL  ++LSGNK+  +         + L  L+L   
Sbjct: 81  EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 10/136 (7%)

Query: 111 LELNRMTSLKWIVLSNNYIKEFVIPN----RKHIEKLDLSNNLISTINLNLNNTYYIKDL 166
           L     + +K +VL N+   E  +       + +E L   N  +++I  NL     +K L
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA-NLPKLNKLKKL 69

Query: 167 ILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN 225
            LS N++S           N+  L L  NKI ++           L+ LDL N  +TN+N
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

Query: 226 ----QCFRNLKKLKYL 237
                 F+ L +L YL
Sbjct: 130 DYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.1 bits (120), Expect = 6e-08
 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 11/126 (8%)

Query: 155 LNLNNTYYIKDLILSYNQISKL----NANTFRNLNVFRLYLKFNKISEIHDFAFNGLNST 210
           L       +K+L+L  ++ ++       + F  L    L      ++ I +       + 
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEF--LSTINVGLTSIANLP---KLNK 65

Query: 211 LEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQN-NTFEHLVNLKSISLSGNKL 268
           L+ L+L +NR++            L +L L  N I+ +      + L NLKS+ L   ++
Sbjct: 66  LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

Query: 269 TRIPDF 274
           T + D+
Sbjct: 126 TNLNDY 131

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 209 STLEFLDLENNRLTNINQ--CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN 266
           S ++ L L+N+R             ++L++L   N  +  I N     L  LK + LS N
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDN 74

Query: 267 KLTRIPDFIHN--KRLSHLNLGYNFLNEL 293
           +++   + +      L+HLNL  N + +L
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 229 RNLKKLKYLYLHNNNIEFIQN-NTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGY 287
           R    +K L L N+     +     +    L+ +S     LT I +     +L  L L  
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSD 73

Query: 288 NFLNEL 293
           N ++  
Sbjct: 74  NRVSGG 79

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 8/122 (6%)

Query: 41  ELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTME 98
            LE  N +P    +L       N        + F  + +L+  +  L ++ +LP    ++
Sbjct: 8   HLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLK 67

Query: 99  TLSVANNYLVNYLEL--NRMTSLKWIVLSNNYIKEF----VIPNRKHIEKLDLSNNLIST 152
            L +++N +   LE+   +  +L  + LS N IK+      +   ++++ LDL N  ++ 
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127

Query: 153 IN 154
           +N
Sbjct: 128 LN 129

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 32/103 (31%), Positives = 42/103 (40%), Gaps = 4/103 (3%)

Query: 189 LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQ 248
           L L   K ++            LEFL L N  L +++     L KLK L L  N I    
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS-NLPKLPKLKKLELSENRIFGGL 87

Query: 249 NNTFEHLVNLKSISLSGNKLTRIPDFIH---NKRLSHLNLGYN 288
           +   E L NL  ++LSGNKL  I         + L  L+L   
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 10/129 (7%)

Query: 118 SLKWIVLSNNYIKEFVIPN----RKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQI 173
           +++ +VL N    +  I        ++E L L N  + +++ NL     +K L LS N+I
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS-NLPKLPKLKKLELSENRI 83

Query: 174 SKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN----QCF 228
                     L N+  L L  NK+ +I           L+ LDL N  +TN+N      F
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF 143

Query: 229 RNLKKLKYL 237
           + L +L YL
Sbjct: 144 KLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 5/136 (3%)

Query: 141 EKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIH 200
             +D+   +   +            L    +   K+   T   +N+  L L    +  + 
Sbjct: 6   SGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS 65

Query: 201 DFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQN-NTFEHLVNL 258
           +         L+ L+L  NR+    +     L  L +L L  N ++ I      + L  L
Sbjct: 66  NLP---KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECL 122

Query: 259 KSISLSGNKLTRIPDF 274
           KS+ L   ++T + D+
Sbjct: 123 KSLDLFNCEVTNLNDY 138

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 213 FLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIP 272
            LD   +    I         L++L L N  +  + N     L  LK + LS N++    
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELSENRIFGGL 87

Query: 273 DFIHN--KRLSHLNLGYNFLNEL 293
           D +      L+HLNL  N L ++
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLKDI 110

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 229 RNLKKLKYLYLHN--NNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLG 286
           R    ++ L L N  +N   I+  T    VNL+ +SL    L  + +     +L  L L 
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISVSNLPKLPKLKKLELS 79

Query: 287 YNFLNEL 293
            N +   
Sbjct: 80  ENRIFGG 86

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 8/122 (6%)

Query: 41  ELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTME 98
            LE  N +P    +L       N          F ++ +L++ +  L ++ +LP    ++
Sbjct: 15  HLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLK 74

Query: 99  TLSVANNYLVNYLEL--NRMTSLKWIVLSNNYIKEF----VIPNRKHIEKLDLSNNLIST 152
            L ++ N +   L++   ++ +L  + LS N +K+      +   + ++ LDL N  ++ 
Sbjct: 75  KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134

Query: 153 IN 154
           +N
Sbjct: 135 LN 136

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query: 206 GLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264
           G+ +T + L L +N++T +    F  L +L  L L NN +  +    F+ L  L  +SL+
Sbjct: 27  GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86

Query: 265 GNKLTRIPD--FIHNKRLSHLNLGYN 288
            N+L  IP   F + K L+H+ L  N
Sbjct: 87  DNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 54.5 bits (132), Expect = 3e-09
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 164 KDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT 222
           + L L  NQI+KL    F  L  + RL L  N+++ +    F+ L   L  L L +N+L 
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ-LTQLSLNDNQLK 91

Query: 223 NI-NQCFRNLKKLKYLYLHNN 242
           +I    F NLK L +++L NN
Sbjct: 92  SIPRGAFDNLKSLTHIWLLNN 112

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 164 KDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT 222
           + L L+ NQI+KL    F +L N+ +LY   NK++ I    F+ L   L  LDL +N L 
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ-LTQLDLNDNHLK 94

Query: 223 NI-NQCFRNLKKLKYLYLHNN 242
           +I    F NLK L ++YL+NN
Sbjct: 95  SIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 53.8 bits (130), Expect = 6e-09
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 206 GLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264
           G+ +  + L L NN++T +    F +L  L+ LY ++N +  I    F+ L  L  + L+
Sbjct: 30  GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89

Query: 265 GNKLTRIPD--FIHNKRLSHLNLGYN 288
            N L  IP   F + K L+H+ L  N
Sbjct: 90  DNHLKSIPRGAFDNLKSLTHIYLYNN 115

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 35/223 (15%), Positives = 69/223 (30%), Gaps = 52/223 (23%)

Query: 113 LNRMTSLKWIVLSNNYIKE-------FVIPNRKHIEKLDLSNNLISTINLNL------NN 159
           L  +   + + L +  + E         +     + +L+L +N +  + ++         
Sbjct: 24  LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83

Query: 160 TYYIKDLILSYNQISKLNANTF-----RNLNVFRLYLKFNKISEIHDFAFNGL------- 207
           +  I+ L L    ++                +  L+L  N +    D     L       
Sbjct: 84  SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG---DAGLQLLCEGLLDP 140

Query: 208 NSTLEFLDLENNRLTN-----INQCFRNLKKLKYLYLHNNNI---------EFIQNNTFE 253
              LE L LE   L+      +    R     K L + NN+I         + ++++   
Sbjct: 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSP-- 198

Query: 254 HLVNLKSISLSGNKLTR------IPDFIHNKRLSHLNLGYNFL 290
               L+++ L    +T                L  L LG N L
Sbjct: 199 --CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 44/298 (14%), Positives = 83/298 (27%), Gaps = 87/298 (29%)

Query: 52  QNKLTTLFIGENHIHQI------ENLNGFRSILWLNMDSN---------LLQTLDSLPKT 96
           Q +L  L +    +           L        L + +N         L Q L   P  
Sbjct: 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200

Query: 97  METLSVANN--------YLVNYLELNRMTSLKWIVLSNNYIK--------EFVIPNRKHI 140
           +E L + +          L   +      SL+ + L +N +           ++     +
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASK--ASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258

Query: 141 EKLDLSNNLISTI-------NLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKF 193
             L +    I+          L    +  +K+L L+ N++    A            L  
Sbjct: 259 RTLWIWECGITAKGCGDLCRVLRAKES--LKELSLAGNELGDEGARLLCET------LLE 310

Query: 194 NKISEIHDFAFNGLNSTLEFLDLENNRLTN-----INQCFRNLKKLKYLYLHNNNIE--- 245
                            LE L +++   T       +      + L  L + NN +E   
Sbjct: 311 P-------------GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357

Query: 246 -------FIQNNTFEHLVNLKSISLSGNKLTRI------PDFIHNKRLSHLNLGYNFL 290
                    Q  +      L+ + L+   ++           + N  L  L+L  N L
Sbjct: 358 VRELCQGLGQPGS-----VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 34/213 (15%), Positives = 69/213 (32%), Gaps = 40/213 (18%)

Query: 117 TSLKWIVLSNNYIKE-------FVIPNRKHIEKLDLSNNLISTINLN------LNNTYYI 163
             ++ + L N  +           +     +++L LS+NL+    L       L+    +
Sbjct: 85  CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRL 144

Query: 164 KDLILSYNQISKLNANTF-----RNLNVFRLYLKFNKISE-----IHDFAFNGLNSTLEF 213
           + L L Y  +S  +            +   L +  N I+E     +           LE 
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQ-GLKDSPCQLEA 203

Query: 214 LDLENNRLTN-----INQCFRNLKKLKYLYLHNNNI-----EFIQNNTFEHLVNLKSISL 263
           L LE+  +T+     +     +   L+ L L +N +       +          L+++ +
Sbjct: 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263

Query: 264 SGNKLTRI------PDFIHNKRLSHLNLGYNFL 290
               +T              + L  L+L  N L
Sbjct: 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 28/183 (15%), Positives = 60/183 (32%), Gaps = 29/183 (15%)

Query: 138 KHIEKLDLSNNLISTINLN--LNNTYYIKDLILSYNQISKLNANTF-----RNLNVFRLY 190
             I+ LD+    +S       L      + + L    +++            N  +  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 191 LKFNKISE-----IHDFAFNGLNSTLEFLDLENNRLTN-----INQCFRNLKKLKYLYLH 240
           L+ N++ +     +        +  ++ L L+N  LT      ++   R L  L+ L+L 
Sbjct: 63  LRSNELGDVGVHCVLQ-GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 241 NNNI-----EFIQNNTFEHLVNLKSISLSGNKLTRI------PDFIHNKRLSHLNLGYNF 289
           +N +     + +     +    L+ + L    L+                   L +  N 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 290 LNE 292
           +NE
Sbjct: 182 INE 184

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 26/194 (13%), Positives = 62/194 (31%), Gaps = 42/194 (21%)

Query: 113 LNRMTSLKWIVLSNNYIKE-------FVIPNRKHIEKLDLSNNLISTINLNL------NN 159
           L+  + L+ + +    I          V+  ++ +++L L+ N +      L        
Sbjct: 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP 311

Query: 160 TYYIKDLILSYNQISKLNANTF-----RNLNVFRLYLKFNKIS-----EIHDFAFNGLNS 209
              ++ L +     +    + F     +N  +  L +  N++      E+         S
Sbjct: 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ-GLGQPGS 370

Query: 210 TLEFLDLENNRLTN-----INQCFRNLKKLKYLYLHNNNI---------EFIQNNTFEHL 255
            L  L L +  +++     +         L+ L L NN +         E ++       
Sbjct: 371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC--- 427

Query: 256 VNLKSISLSGNKLT 269
             L+ + L     +
Sbjct: 428 -LLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 183 NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN-----INQCFRNLKKLKYL 237
           +L++  L ++  ++S+        L    + + L++  LT      I+   R    L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 238 YLHNNNIEFIQNNTFEHL--------VNLKSISLSGNKLTRI------PDFIHNKRLSHL 283
            L +N +    +     +          ++ +SL    LT                L  L
Sbjct: 62  NLRSNEL---GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 284 NLGYNFLNE 292
           +L  N L +
Sbjct: 119 HLSDNLLGD 127

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 48/228 (21%)

Query: 113 LNRMTSLKWIVLSNNYIKEF-------VIPNRKHIEKLDLSNNLIS-------------- 151
           L +   L  + LS+N             +     +E L L NN +               
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149

Query: 152 TINLNLNNTYYIKDLILSYNQISKLNANTF-----RNLNVFRLYLKFNKISE--IHDFAF 204
            +N    N   ++ +I   N++   +   +      +  +  + +  N I    I     
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209

Query: 205 NGL--NSTLEFLDLENNRLTN-----INQCFRNLKKLKYLYLHNNNI------EFIQNNT 251
            GL     L+ LDL++N  T+     +    ++   L+ L L++  +        +   +
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269

Query: 252 FEHLVNLKSISLSGNKLTR-----IPDFI--HNKRLSHLNLGYNFLNE 292
               + L+++ L  N++       +   I      L  L L  N  +E
Sbjct: 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 33/192 (17%), Positives = 58/192 (30%), Gaps = 43/192 (22%)

Query: 140 IEKLDLSNNLIS-----TINLNLNNTYYIKDLILSYNQISKLNANTF-----RNLNVFRL 189
           IE   L  + I+     ++   L     +K+++LS N I    A           ++   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 190 YLKFNKISEIHDFAFNGL---------NSTLEFLDLENNRLTN-----INQCFRNLKKLK 235
                    + D     L            L  + L +N         +         L+
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 236 YLYLHNNNI-------------EFIQNNTFEHLVNLKSISLSGNKLTRI------PDFIH 276
           +LYLHNN +             E   N   ++   L+SI    N+L           F  
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 277 NKRLSHLNLGYN 288
           ++ L  + +  N
Sbjct: 186 HRLLHTVKMVQN 197

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 36/227 (15%), Positives = 72/227 (31%), Gaps = 40/227 (17%)

Query: 53  NKLTTLFIGENHIHQI------ENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNY 106
            KL T+ + +N           + L+    +  L + +N L      P+    ++ A   
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG-----PQAGAKIARALQE 148

Query: 107 LVNYLELNRMTSLKWIVLSNNYIKEF-------VIPNRKHIEKLDLSNNLI------STI 153
           L    +      L+ I+   N ++            + + +  + +  N I        +
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208

Query: 154 NLNLNNTYYIKDLILSYNQISKLNANTF-----RNLNVFRLYLKFNKIS-----EIHDFA 203
              L     +K L L  N  + L ++          N+  L L    +S      + D  
Sbjct: 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268

Query: 204 FNGLNSTLEFLDLENNRLTN-----INQCFR-NLKKLKYLYLHNNNI 244
               N  L+ L L+ N +       +       +  L +L L+ N  
Sbjct: 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 40/280 (14%), Positives = 85/280 (30%), Gaps = 66/280 (23%)

Query: 68  IENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELNRM-TSLKWIVLSN 126
           +E L      L   +D N     D        +      L   L+       L  +VL N
Sbjct: 199 LEMLQK----LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LVLLN 252

Query: 127 NYIKEFVIPNRKHIEKLDLS-NNLISTINLNLNN---TYYIKDLILSYNQISKLNANTFR 182
                  + N K     +LS   L++T    + +         + L ++ ++        
Sbjct: 253 -------VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-- 303

Query: 183 NLNVFRLYL--KFNKISE----IHDFAFNGL-------NSTLE-FLDLENNRLTNINQ-C 227
             ++   YL  +   +       +    + +        +T + +  +  ++LT I +  
Sbjct: 304 -KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 228 FRNLK----KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS---GNKLTRIPDFI----H 276
              L+    +  +  L       +    F    ++ +I LS    + +      +    H
Sbjct: 363 LNVLEPAEYRKMFDRL------SV----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 277 NKRL--SHLNLGYNFLNELILESSI-VENE------IIDQ 307
              L           +  + LE  + +ENE      I+D 
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 39/261 (14%), Positives = 87/261 (33%), Gaps = 62/261 (23%)

Query: 86  LLQTLDSLPKTMETLSVANN--------YLVNYLELNRMTSLKWIVLSNNYIK------- 130
           L+Q   + P ++ +L+++ N         LV  L      ++  + LS N++        
Sbjct: 42  LIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP-ANVTSLNLSGNFLSYKSSDEL 100

Query: 131 -EFVIPNRKHIEKLDLSNNLISTINLN------LNNTYYIKDLILSYNQISKLNANTF-- 181
            + +      I  LDL  N  S+ + +       N    I  L L  N +   +++    
Sbjct: 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160

Query: 182 ----RNLNVFRLYLKFNKISEIHDF----AFNGLNSTLEFLDLENNRLTN-----INQCF 228
                  NV  L L+ N ++  +          + +++  LDL  N L       +   F
Sbjct: 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF 220

Query: 229 R-NLKKLKYLYLHNNNI---------EFIQNNTFEHLVNLKSISLSGNKLTRIPD----- 273
                 +  L L  N +             +       +L+++ L  + +  +       
Sbjct: 221 SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK-----HLQTVYLDYDIVKNMSKEQCKA 275

Query: 274 ----FIHNKRLSHLNLGYNFL 290
               F + +++  ++     +
Sbjct: 276 LGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 41/228 (17%), Positives = 72/228 (31%), Gaps = 54/228 (23%)

Query: 113 LNRMTSLKWIVLSNNYIK--------EFVIPNRKHIEKLDLSNNLISTIN-------LNL 157
            +    +  + LS N +         +        +  L+LS N +   N       L  
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 158 NNTYYIKDLILSYNQISKLNANTF------RNLNVFRLYLKFNKISE--IHDF--AFNGL 207
                +  L LS N +S  +++            +  L L +N  S     +F  AF+ L
Sbjct: 78  IPAN-VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 208 NSTLEFLDLENNRLTN-----INQCFRNL-KKLKYLYLHNNNIE----------FIQNNT 251
            +++  L+L  N L       + Q    +   +  L L  NN+                 
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA 196

Query: 252 FEHLVNLKSISLSGNKLTR-----IPDFI--HNKRLSHLNLGYNFLNE 292
                ++ S+ LS N L       +          +  LNL  N L+ 
Sbjct: 197 -----SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 33/227 (14%), Positives = 69/227 (30%), Gaps = 45/227 (19%)

Query: 86  LLQTLDSLPKTMETLSVANN--------YLVNYLELNRMTSLKWIVLSNNYIK------- 130
             Q   +LP ++ +L++  N         L+  L      ++  + L  N +        
Sbjct: 129 FKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP-ANVNSLNLRGNNLASKNCAEL 187

Query: 131 -EFVIPNRKHIEKLDLSNNLISTINLNL------NNTYYIKDLILSYNQISKLNANTF-- 181
            +F+      +  LDLS NL+   +         +   ++  L L  N +   +      
Sbjct: 188 AKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247

Query: 182 ---RNLNVFRLYLKFNKISEIHDFAFNGL------NSTLEFLDLENNRLTN-----INQC 227
                 ++  +YL ++ +  +       L         +  +D     +       I+  
Sbjct: 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNL 307

Query: 228 FRNL-KKLKYLYLHNNNIEFIQNNTFEHLVN-----LKSISLSGNKL 268
            R L  K     L N  + F Q +            L+    +   L
Sbjct: 308 IRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 25/185 (13%), Positives = 58/185 (31%), Gaps = 37/185 (20%)

Query: 138 KHIEKLDLSNNLISTINLN------LNNTYYIKDLILSYNQISKLNANTF--RNLNVFRL 189
             + +L+L+   ++ +          +  + + ++ L+  Q+      T     L   +L
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKL 131

Query: 190 YLKFNKISEIH----DFAFNGLNSTLEFLDLENNRLTN-----INQCFRNLKKLKYLYLH 240
            L+ N +                  +  L L NN LT      + +       + +L L 
Sbjct: 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191

Query: 241 NNNI---------EFIQNNTFEHLVNLKSISLSGNKLTRI------PDFIHNKRLSHLNL 285
           +  +           +  N       L+ ++++ N                +  L  L+L
Sbjct: 192 HTGLGDEGLELLAAQLDRNR-----QLQELNVAYNGAGDTAALALARAAREHPSLELLHL 246

Query: 286 GYNFL 290
            +N L
Sbjct: 247 YFNEL 251

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 1/38 (2%)

Query: 206 GLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNN 242
                   L L  N LT +       L  L+  +L  N
Sbjct: 28  AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 40.9 bits (96), Expect = 8e-05
 Identities = 8/33 (24%), Positives = 13/33 (39%)

Query: 234 LKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN 266
              L L  NN+  +     + L  L++  L  N
Sbjct: 33  TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 12/81 (14%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 194 NKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFE 253
           + + ++ +  F    + L+  DL   ++T +         ++ + L    ++ I +  F 
Sbjct: 166 STLEQLKEDIFYYCYN-LKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFL 223

Query: 254 HLVNLKSISLSGNKLTRIPDF 274
               LK+I +    ++ I   
Sbjct: 224 KTSQLKTIEIP-ENVSTIGQE 243

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	325
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.97
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.95
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.82
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.79
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.73
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.72
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.72
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.7
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.69
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.52
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.49
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.48
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.43
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.39
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.38
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.37
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.36
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.35
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.33
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.23
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.85
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.75
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.5
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.45
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.1
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.94
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.9
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.76
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.41
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.24
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.13
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.7
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	80.41

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4e-32  Score=249.02  Aligned_cols=288  Identities=19%  Similarity=0.197  Sum_probs=230.9

Q ss_pred             cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCccEE
Q psy11652         27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETL  100 (325)
Q Consensus        27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L  100 (325)
                      +++++|+++++.++.++...| ..+ ++|++|+|++|.+..++  .|.++++|++|++++|.+..+  ..|  +++|++|
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~-~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEF-ASF-PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL  109 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTT-TTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred             CCCcEEECCCCccceECHhHc-cCC-CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence            478899999999998887677 777 89999999999888874  788899999999999988887  345  7899999


Q ss_pred             EeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCc
Q psy11652        101 SVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQIS  174 (325)
Q Consensus       101 ~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~  174 (325)
                      ++++|.+...  ..+..+++|++|++++|.+..++   +..+++|++|++++|.++.+ +..+.++++|+.|++.+|.+.
T Consensus       110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence            9999988777  67888899999999999888665   66788999999999988887 567888899999999998888


Q ss_pred             ccccCccCC-ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchh
Q psy11652        175 KLNANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTF  252 (325)
Q Consensus       175 ~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l  252 (325)
                      .++...+.. ++|+.|++++|......+....... +|+.|++++|.+..+|. .+..+++|+.|++++|.++++++..+
T Consensus       190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  268 (477)
T 2id5_A          190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML  268 (477)
T ss_dssp             EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC-CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred             EeChhhcccCcccceeeCCCCccccccCcccccCc-cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence            776654444 8888888888764433223333444 78888888888887774 67888888888888888888877778


Q ss_pred             ccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcccccccccchhhhcccccccccceee
Q psy11652        253 EHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVM  317 (325)
Q Consensus       253 ~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (325)
                      ..+++|+.|++++|.++.+++  +..+++|+.|++++|.++.+++..+.....+..+++..|.+.+.
T Consensus       269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            888888888888888886654  88888888888888888888887766666777778888877543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.9e-31  Score=233.43  Aligned_cols=260  Identities=20%  Similarity=0.293  Sum_probs=135.7

Q ss_pred             cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEEe
Q psy11652         25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSV  102 (325)
Q Consensus        25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l  102 (325)
                      .+++|++|+++++.++.++.  + ..+ ++|++|++++|.+..++.+.++++|++|++++|.+..++.+  +++|++|++
T Consensus        42 ~l~~L~~L~l~~~~i~~~~~--~-~~~-~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l  117 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQG--I-EYL-TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYL  117 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCTT--G-GGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             hcccccEEEEeCCccccchh--h-hhc-CCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEEC
Confidence            55566666666666666554  3 333 66666666666666555556666666666666665555444  566666666


Q ss_pred             ecCcccchhhhccCCCCCEEEccCCcc-eeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccC-
Q psy11652        103 ANNYLVNYLELNRMTSLKWIVLSNNYI-KEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNAN-  179 (325)
Q Consensus       103 ~~~~l~~~~~~~~~~~L~~L~l~~~~~-~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-  179 (325)
                      ++|.+.....+..+++|++|++++|.. ..++ ...+++|++|++++|.+...+. +..+++|+.|++.+|.+..++.. 
T Consensus       118 ~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~  196 (347)
T 4fmz_A          118 NEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLA  196 (347)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGG
T ss_pred             cCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccccc
Confidence            666655554455566666666665532 2333 4455555555555555554422 44555555555555555444330 


Q ss_pred             --------------------ccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeC
Q psy11652        180 --------------------TFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYL  239 (325)
Q Consensus       180 --------------------~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l  239 (325)
                                          +...++|+.|++++|.++..++  +..++ +|+.|++++|.+..++ .+..+++|++|++
T Consensus       197 ~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l  272 (347)
T 4fmz_A          197 SLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLS-QLTWLEIGTNQISDIN-AVKDLTKLKMLNV  272 (347)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCT-TCCEEECCSSCCCCCG-GGTTCTTCCEEEC
T ss_pred             CCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCC-CCCEEECCCCccCCCh-hHhcCCCcCEEEc
Confidence                                2223445555555554444432  44444 5555555555444442 2444455555555


Q ss_pred             CCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCccccc
Q psy11652        240 HNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELIL  295 (325)
Q Consensus       240 ~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~  295 (325)
                      ++|.+++++  .+..+++|+.|++++|.++..+.  +..+++|+.|++++|+++++++
T Consensus       273 ~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          273 GSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             CSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             cCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            555544442  24444555555555555543332  4445555555555555555444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=8.6e-32  Score=245.33  Aligned_cols=288  Identities=25%  Similarity=0.271  Sum_probs=212.3

Q ss_pred             cccceEEcCCCceeeecCCCcCcccccCccEEECCCCccc-ccc--cccCCCCccEEEccCCCCccc--ccc--cCCccE
Q psy11652         27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIH-QIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTMET   99 (325)
Q Consensus        27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~   99 (325)
                      +++++|+++++.++.++...| ..+ ++|++|++++|.+. .++  .|.++++|++|++++|.+..+  ..|  +++|++
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~-~~l-~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  107 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSF-SRL-QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV  107 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTT-SSC-TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred             CccCEEEecCCccCcCChhHh-ccC-ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence            468888888888887766567 666 78888888888765 443  677788888888888877766  445  778888


Q ss_pred             EEeecCcccch--h--hhccCCCCCEEEccCCcceee-c---CCCCCCccEEEccCCccccc-hhhccC-----------
Q psy11652        100 LSVANNYLVNY--L--ELNRMTSLKWIVLSNNYIKEF-V---IPNRKHIEKLDLSNNLISTI-NLNLNN-----------  159 (325)
Q Consensus       100 L~l~~~~l~~~--~--~~~~~~~L~~L~l~~~~~~~~-~---~~~~~~L~~L~l~~~~~~~~-~~~~~~-----------  159 (325)
                      |++++|.+...  .  .+..+++|++|++++|.++.+ |   +..+++|++|++++|.++.. +..+..           
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l  187 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL  187 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence            88888877653  2  377778888888888877754 3   34677788888887777665 433333           


Q ss_pred             -----------------------CCCccEEEccCCcCcccccC-------------------------------------
Q psy11652        160 -----------------------TYYIKDLILSYNQISKLNAN-------------------------------------  179 (325)
Q Consensus       160 -----------------------~~~L~~L~l~~~~l~~~~~~-------------------------------------  179 (325)
                                             +++|+.|++++|.+....+.                                     
T Consensus       188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  267 (455)
T 3v47_A          188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF  267 (455)
T ss_dssp             TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred             ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence                                   25677777776655321000                                     


Q ss_pred             ---ccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCch-HhhhCCCCCCEEeCCCCcccccccchhccC
Q psy11652        180 ---TFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFIQNNTFEHL  255 (325)
Q Consensus       180 ---~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~  255 (325)
                         ....++|+.|++++|.+++..+..+..++ +|+.|++++|.+..++ ..+..+++|++|++++|.++++.+..+..+
T Consensus       268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  346 (455)
T 3v47_A          268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL  346 (455)
T ss_dssp             TTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTC
T ss_pred             ccccccccCceEEEecCccccccchhhcccCC-CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCc
Confidence               00114677888888888777777788887 8899999888888654 477888889999999998888877788888


Q ss_pred             ccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcccccccccchhhhcccccccccceee
Q psy11652        256 VNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVM  317 (325)
Q Consensus       256 ~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (325)
                      ++|+.|++++|.++.+++  +..+++|++|++++|++++++++.......+..+++..|++.+.
T Consensus       347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence            889999999998886643  88888999999999999888887666666777888888888543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=4.4e-31  Score=232.27  Aligned_cols=277  Identities=19%  Similarity=0.296  Sum_probs=205.0

Q ss_pred             cCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEEeecCcccchh
Q psy11652         34 NEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNYL  111 (325)
Q Consensus        34 l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l~~~~l~~~~  111 (325)
                      +....++++..  + ..+ ++|++|+++++.+..++.+..+++|++|++++|.+.++..+  +++|++|++++|.+..+.
T Consensus        29 ~~~~~~~~~~~--~-~~l-~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~  104 (347)
T 4fmz_A           29 LQKASVTDVVT--Q-EEL-ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS  104 (347)
T ss_dssp             HTCSCTTSEEC--H-HHH-TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred             ccccccCCccc--c-hhc-ccccEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch
Confidence            34444444444  2 445 99999999999999998889999999999999999888557  999999999999998888


Q ss_pred             hhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEE
Q psy11652        112 ELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLY  190 (325)
Q Consensus       112 ~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~  190 (325)
                      .+.++++|++|++++|.+..++ ...+++|++|++++|........+..+++|+.|++.+|.+..++. +...++|+.|+
T Consensus       105 ~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~  183 (347)
T 4fmz_A          105 ALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLS  183 (347)
T ss_dssp             GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEE
T ss_pred             HHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEE
Confidence            8999999999999999999888 788999999999999655554458999999999999999887765 45568999999


Q ss_pred             cccCCCcccCh--------------------hhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccc
Q psy11652        191 LKFNKISEIHD--------------------FAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNN  250 (325)
Q Consensus       191 l~~~~l~~~~~--------------------~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  250 (325)
                      +++|.+++.++                    ..+..++ +|+.|++++|.+..++. +..+++|++|++++|.++.++  
T Consensus       184 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--  259 (347)
T 4fmz_A          184 LNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMT-RLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN--  259 (347)
T ss_dssp             CTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCT-TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--
T ss_pred             ccCCcccccccccCCCccceeecccCCCCCCchhhcCC-cCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh--
Confidence            99998876643                    0133333 55555555555554444 555566666666666555542  


Q ss_pred             hhccCccCCEEEccCCCCcccCCCCCCCCCCEEECCCCcCcccccccccchhhhcccccccccceeecc
Q psy11652        251 TFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVMED  319 (325)
Q Consensus       251 ~l~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (325)
                      .+..+++|+.|++++|.++.++.+..+++|+.|++++|++++.++........+..+++..|.+..++.
T Consensus       260 ~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          260 AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             hHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            355566666666666666665446666667777777777666666555445556666777777655443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.1e-31  Score=244.28  Aligned_cols=291  Identities=17%  Similarity=0.208  Sum_probs=257.0

Q ss_pred             hcccc-cceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCC
Q psy11652         24 ISCIL-LMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKT   96 (325)
Q Consensus        24 ~~~~~-L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~   96 (325)
                      +.|.. -+.+++++..++.+|. .+    +++++.|++++|.+..++  .|.++++|++|++++|.+..+  ..|  +++
T Consensus         7 C~C~~~~~~v~c~~~~l~~ip~-~~----~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~   81 (477)
T 2id5_A            7 CECSAQDRAVLCHRKRFVAVPE-GI----PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN   81 (477)
T ss_dssp             CEEETTTTEEECCSCCCSSCCS-CC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             CeECCCCCEEEeCCCCcCcCCC-CC----CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCcc
Confidence            44543 4689999999999998 45    378999999999999886  899999999999999999888  566  899


Q ss_pred             ccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccC
Q psy11652         97 METLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSY  170 (325)
Q Consensus        97 L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~  170 (325)
                      |+.|++++|.+..+  ..+.++++|++|++++|.+..++   +..+++|++|++++|.++.+ +..|.++++|+.|++.+
T Consensus        82 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  161 (477)
T 2id5_A           82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK  161 (477)
T ss_dssp             CCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES
T ss_pred             CCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC
Confidence            99999999999888  46789999999999999998665   66899999999999999988 78899999999999999


Q ss_pred             CcCcccccCccC-CccccEEEcccCCCcccChhhhhCccccCCEEEccCCCC-cCchHhhhCCCCCCEEeCCCCcccccc
Q psy11652        171 NQISKLNANTFR-NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRL-TNINQCFRNLKKLKYLYLHNNNIEFIQ  248 (325)
Q Consensus       171 ~~l~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~~~~~~L~~L~l~~~~l~~~~  248 (325)
                      |.++.++...+. .++|+.|++++|.+....+..|..++ +|+.|++++|.. ..++.......+|+.|++++|.++.++
T Consensus       162 n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  240 (477)
T 2id5_A          162 CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY-RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP  240 (477)
T ss_dssp             CCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCT-TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC
T ss_pred             CcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCc-ccceeeCCCCccccccCcccccCccccEEECcCCcccccC
Confidence            999988765444 49999999999999999888899998 999999999764 466665556679999999999999998


Q ss_pred             cchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcccccccccchhhhcccccccccceeeccc
Q psy11652        249 NNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVMEDQ  320 (325)
Q Consensus       249 ~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (325)
                      ...+..+++|+.|++++|.++.++.  +..+++|+.|++++|.++.+++........+..+++..|++..++..
T Consensus       241 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  314 (477)
T 2id5_A          241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES  314 (477)
T ss_dssp             HHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGG
T ss_pred             HHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHh
Confidence            8889999999999999999998876  89999999999999999999988877778888899999999877653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.3e-31  Score=247.97  Aligned_cols=286  Identities=19%  Similarity=0.216  Sum_probs=219.1

Q ss_pred             ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCccEEE
Q psy11652         28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLS  101 (325)
Q Consensus        28 ~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~  101 (325)
                      .+++|+++++.|+.++...| ..+ ++|++|++++|.+..++  +|.++++|++|++++|.+..+  ..|  +++|++|+
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~-~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTF-SRL-INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTS-TTC-TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             cCcEEEccCCccCcCChhHh-ccC-ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence            78999999999999977678 777 89999999999988774  789999999999999998877  456  89999999


Q ss_pred             eecCcccch--hhhccCCCCCEEEccCCcceee--c-CCCCCCccEEEccCCccccc-hhhccCCCCcc--EEEccCCcC
Q psy11652        102 VANNYLVNY--LELNRMTSLKWIVLSNNYIKEF--V-IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIK--DLILSYNQI  173 (325)
Q Consensus       102 l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~--~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~--~L~l~~~~l  173 (325)
                      +++|.+..+  ..+.++++|++|++++|.+..+  | ...+++|++|++++|.++.+ +..++.+++|+  .|++.+|.+
T Consensus       112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI  191 (606)
T ss_dssp             CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred             ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence            999998887  6788999999999999999865  4 55689999999999999888 77788888888  788888887


Q ss_pred             cccccCccCCc----------------------------------------------------cccEEEcccCCCcccCh
Q psy11652        174 SKLNANTFRNL----------------------------------------------------NVFRLYLKFNKISEIHD  201 (325)
Q Consensus       174 ~~~~~~~~~~~----------------------------------------------------~L~~L~l~~~~l~~~~~  201 (325)
                      ..+++..+...                                                    +++.|++++|.++++++
T Consensus       192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~  271 (606)
T 3t6q_A          192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS  271 (606)
T ss_dssp             CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred             CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence            76655444322                                                    56667777777777777


Q ss_pred             hhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCc-ccCC--CCCCC
Q psy11652        202 FAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT-RIPD--FIHNK  278 (325)
Q Consensus       202 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~l~~--~~~~~  278 (325)
                      ..|..++ +|++|++++|.+..+|..+..+++|++|++++|.+.+.++..+..+++|+.|++++|.+. .+|.  +..++
T Consensus       272 ~~~~~l~-~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  350 (606)
T 3t6q_A          272 NTFHCFS-GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE  350 (606)
T ss_dssp             TTTTTCT-TCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred             HHhcccc-CCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence            7777777 888888888888877777777888888888888877766666666777777777777665 4443  55666


Q ss_pred             CCCEEECCCCcCcccc--cccccchhhhccccccccccee
Q psy11652        279 RLSHLNLGYNFLNELI--LESSIVENEIIDQNMLFNSNAV  316 (325)
Q Consensus       279 ~L~~L~l~~n~i~~~~--~~~~~~~~~~~~~~~~~~~~~~  316 (325)
                      +|++|++++|.++.++  +.......++..+++..|.+..
T Consensus       351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  390 (606)
T 3t6q_A          351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS  390 (606)
T ss_dssp             TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE
T ss_pred             cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc
Confidence            6666666666666554  3333333444445555555433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=9.3e-31  Score=233.88  Aligned_cols=279  Identities=20%  Similarity=0.241  Sum_probs=157.9

Q ss_pred             hcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCc
Q psy11652         24 ISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTM   97 (325)
Q Consensus        24 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L   97 (325)
                      ..++++++++++++.++.+|...| ..+ ++|++|++++|.+..++  .|.++++|++|++++|.+..+  ..|  +++|
T Consensus        42 ~~l~~l~~l~l~~~~l~~l~~~~~-~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRKLPAALL-DSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             GGGCCCSEEEEESCEESEECTHHH-HHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cccCCceEEEecCCchhhCChhHh-ccc-ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence            345666666666666666666334 444 66666666666666654  566666666666666666655  233  6666


Q ss_pred             cEEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccchhhccCCC-----------
Q psy11652         98 ETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTINLNLNNTY-----------  161 (325)
Q Consensus        98 ~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----------  161 (325)
                      ++|++++|.+..+  ..+.++++|++|++++|.++.++   +..+++|++|++++|.++.++  +..++           
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL  197 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSC
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccc
Confidence            6666666666655  23456666666666666666544   445566666666666665541  22233           


Q ss_pred             --------CccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCc-hHhhhCCC
Q psy11652        162 --------YIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLK  232 (325)
Q Consensus       162 --------~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~  232 (325)
                              +|+.|++.+|.+..++...  .++|+.|++++|.+++.  ..+..++ +|++|++++|.+..+ |..+..++
T Consensus       198 l~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~  272 (390)
T 3o6n_A          198 LSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYP-GLVEVDLSYNELEKIMYHPFVKMQ  272 (390)
T ss_dssp             CSEEECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCEEESGGGTTCS
T ss_pred             ccccCCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCC-CccEEECCCCcCCCcChhHccccc
Confidence                    3444444444444433221  24566666666665544  2455555 666666666665533 34555666


Q ss_pred             CCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC-CCCCCCCCEEECCCCcCcccccccccchhhhccccccc
Q psy11652        233 KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLF  311 (325)
Q Consensus       233 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~  311 (325)
                      +|++|++++|.+++++. .+..+++|+.|++++|.++.+|. +..+++|+.|++++|+++.++..   ....+..+++..
T Consensus       273 ~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~---~~~~L~~L~l~~  348 (390)
T 3o6n_A          273 RLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS---THHTLKNLTLSH  348 (390)
T ss_dssp             SCCEEECCSSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCC---TTCCCSEEECCS
T ss_pred             cCCEEECCCCcCcccCc-ccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCch---hhccCCEEEcCC
Confidence            66666666666655433 23445666666666666665554 55556666666666666655422   122344455555


Q ss_pred             ccce
Q psy11652        312 NSNA  315 (325)
Q Consensus       312 ~~~~  315 (325)
                      |++.
T Consensus       349 N~~~  352 (390)
T 3o6n_A          349 NDWD  352 (390)
T ss_dssp             SCEE
T ss_pred             CCcc
Confidence            5553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.97  E-value=2.6e-30  Score=243.78  Aligned_cols=181  Identities=24%  Similarity=0.238  Sum_probs=94.8

Q ss_pred             CccEEEccCCccccc---hhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccCh-hhhhCccccCCEE
Q psy11652        139 HIEKLDLSNNLISTI---NLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHD-FAFNGLNSTLEFL  214 (325)
Q Consensus       139 ~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~L~~L  214 (325)
                      +|++|++++|.++..   +..+..+++|+.|++++|.+..++..+...++|+.|++++|.+.+..+ ..+..++ +|+.|
T Consensus       351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L  429 (606)
T 3vq2_A          351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE-KLLYL  429 (606)
T ss_dssp             TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT-TCCEE
T ss_pred             CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccc-cCCEE
Confidence            334444444443332   333444555555555555554444334344566666666665555444 3455555 66666


Q ss_pred             EccCCCCc-CchHhhhCCCCCCEEeCCCCcccc-cccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcC
Q psy11652        215 DLENNRLT-NINQCFRNLKKLKYLYLHNNNIEF-IQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFL  290 (325)
Q Consensus       215 ~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i  290 (325)
                      ++++|.+. ..|..+..+++|++|++++|.+++ ..+..+..+++|+.|++++|.++.+++  +..+++|++|++++|++
T Consensus       430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  509 (606)
T 3vq2_A          430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL  509 (606)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence            66666555 233445555566666666665554 234445555566666666665554432  55555566666666655


Q ss_pred             cccccccccchhhhcccccccccceeeccc
Q psy11652        291 NELILESSIVENEIIDQNMLFNSNAVMEDQ  320 (325)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (325)
                      +++++........+..+++..|++..+|..
T Consensus       510 ~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~  539 (606)
T 3vq2_A          510 LFLDSSHYNQLYSLSTLDCSFNRIETSKGI  539 (606)
T ss_dssp             SCEEGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred             CCcCHHHccCCCcCCEEECCCCcCcccCHh
Confidence            555554444444455555555555555443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=7.2e-30  Score=223.03  Aligned_cols=274  Identities=16%  Similarity=0.200  Sum_probs=231.2

Q ss_pred             ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCccEEE
Q psy11652         28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLS  101 (325)
Q Consensus        28 ~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~  101 (325)
                      +++.++++++.++.+|. .+    .+.+++|++++|.++.++  .|.++++|++|++++|.+..+  ..|  +++|++|+
T Consensus        32 ~l~~l~~~~~~l~~lp~-~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPK-DL----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             ETTEEECTTSCCCSCCC-SC----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCeEEEecCCCccccCc-cC----CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            79999999999999988 44    378999999999999887  789999999999999999888  456  89999999


Q ss_pred             eecCcccch-hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCcccc--c-hhhccCCCCccEEEccCCcCc
Q psy11652        102 VANNYLVNY-LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLIST--I-NLNLNNTYYIKDLILSYNQIS  174 (325)
Q Consensus       102 l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~--~-~~~~~~~~~L~~L~l~~~~l~  174 (325)
                      +++|.+..+ ..+  .++|++|++++|.++.++   +..+++|+.|++++|.++.  . +..+.++++|+.|++.+|.++
T Consensus       107 Ls~n~l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          107 LSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             CCSSCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCCcCCccChhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            999998877 322  279999999999999776   6789999999999999864  3 778899999999999999999


Q ss_pred             ccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhc
Q psy11652        175 KLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFE  253 (325)
Q Consensus       175 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~  253 (325)
                      .++....  ++|+.|++++|.+++..+..+..++ +|+.|++++|.+..++. .+..+++|++|++++|.++.++. .+.
T Consensus       185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-~l~  260 (330)
T 1xku_A          185 TIPQGLP--PSLTELHLDGNKITKVDAASLKGLN-NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLA  260 (330)
T ss_dssp             SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCT-TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-TTT
T ss_pred             cCCcccc--ccCCEEECCCCcCCccCHHHhcCCC-CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh-hhc
Confidence            8876554  8999999999999998888899998 99999999999986664 78889999999999999997766 578


Q ss_pred             cCccCCEEEccCCCCcccCC--CCC------CCCCCEEECCCCcCcc--cccccccchhhhcccccccc
Q psy11652        254 HLVNLKSISLSGNKLTRIPD--FIH------NKRLSHLNLGYNFLNE--LILESSIVENEIIDQNMLFN  312 (325)
Q Consensus       254 ~~~~L~~L~l~~n~l~~l~~--~~~------~~~L~~L~l~~n~i~~--~~~~~~~~~~~~~~~~~~~~  312 (325)
                      .+++|+.|++++|.++.++.  +..      .++++.+++++|++..  +++..+.....+..+++..|
T Consensus       261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            88999999999999998876  432      3788999999999976  44444444455555666555

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=1.9e-30  Score=236.45  Aligned_cols=272  Identities=25%  Similarity=0.273  Sum_probs=228.1

Q ss_pred             hhcccccceEEcCCCcee-eecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--c--cc--
Q psy11652         23 QISCILLMSAENEDNQIA-ELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--D--SL--   93 (325)
Q Consensus        23 ~~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~--~l--   93 (325)
                      ...+++|++|+++++.+. .++...| ..+ ++|++|++++|.+..++  .|.++++|++|++++|.+...  .  .|  
T Consensus        50 ~~~l~~L~~L~L~~n~~~~~i~~~~~-~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  127 (455)
T 3v47_A           50 FSRLQDLQFLKVEQQTPGLVIRNNTF-RGL-SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP  127 (455)
T ss_dssp             TSSCTTCCEEECCCCSTTCEECTTTT-TTC-TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTT
T ss_pred             hccCccccEEECcCCcccceECcccc-ccc-ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccC
Confidence            457889999999999886 7776577 777 89999999999988774  789999999999999998863  2  25  


Q ss_pred             cCCccEEEeecCcccch-h--hhccCCCCCEEEccCCcceeec---CC--------------------------------
Q psy11652         94 PKTMETLSVANNYLVNY-L--ELNRMTSLKWIVLSNNYIKEFV---IP--------------------------------  135 (325)
Q Consensus        94 ~~~L~~L~l~~~~l~~~-~--~~~~~~~L~~L~l~~~~~~~~~---~~--------------------------------  135 (325)
                      +++|++|++++|.+... .  .+.++++|++|++++|.++.++   +.                                
T Consensus       128 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~  207 (455)
T 3v47_A          128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN  207 (455)
T ss_dssp             CTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCC
T ss_pred             cccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccc
Confidence            89999999999988877 2  3889999999999999877443   11                                


Q ss_pred             --CCCCccEEEccCCccccc-hhhccC---------------------------------------CCCccEEEccCCcC
Q psy11652        136 --NRKHIEKLDLSNNLISTI-NLNLNN---------------------------------------TYYIKDLILSYNQI  173 (325)
Q Consensus       136 --~~~~L~~L~l~~~~~~~~-~~~~~~---------------------------------------~~~L~~L~l~~~~l  173 (325)
                        .+++|++|++++|.++.. +..+..                                       .++|+.|++++|.+
T Consensus       208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  287 (455)
T 3v47_A          208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI  287 (455)
T ss_dssp             TTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC
T ss_pred             ccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccc
Confidence              236789999999887654 332211                                       25799999999998


Q ss_pred             cccccCccC-CccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCc-hHhhhCCCCCCEEeCCCCcccccccch
Q psy11652        174 SKLNANTFR-NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNT  251 (325)
Q Consensus       174 ~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~  251 (325)
                      ....+..+. .++|+.|++++|.+++..+..|..++ +|+.|++++|.+..+ +..+..+++|++|++++|.++++.+..
T Consensus       288 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  366 (455)
T 3v47_A          288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS  366 (455)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cccchhhcccCCCCCEEECCCCcccccChhHhcCcc-cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhh
Confidence            876555444 49999999999999999888999998 999999999999866 457899999999999999999998888


Q ss_pred             hccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCccccccc
Q psy11652        252 FEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILES  297 (325)
Q Consensus       252 l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~  297 (325)
                      +..+++|+.|++++|+++.+|.  +..+++|+.|++++|+++...+..
T Consensus       367 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  414 (455)
T 3v47_A          367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  414 (455)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence            9999999999999999999887  789999999999999999876644

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=5.9e-30  Score=241.35  Aligned_cols=286  Identities=20%  Similarity=0.232  Sum_probs=250.9

Q ss_pred             ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc--ccc--cCCccEEEe
Q psy11652         28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLSV  102 (325)
Q Consensus        28 ~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l  102 (325)
                      .+++|+++++.++.++...| ..+ ++|++|++++|.++.+| .+.++++|++|++++|.+..+  ..+  +++|+.|++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~-~~l-~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  332 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTF-HCF-SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI  332 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTT-TTC-TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred             ceeEEEeecCccCccCHHHh-ccc-cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence            79999999999999998677 777 99999999999999998 889999999999999999887  455  899999999


Q ss_pred             ecCcccch---hhhccCCCCCEEEccCCcceee---c--CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcC
Q psy11652        103 ANNYLVNY---LELNRMTSLKWIVLSNNYIKEF---V--IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQI  173 (325)
Q Consensus       103 ~~~~l~~~---~~~~~~~~L~~L~l~~~~~~~~---~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l  173 (325)
                      ++|.+...   ..+..+++|++|++++|.+..+   +  +..+++|++|++++|.+... +..+..+++|+.|++.+|.+
T Consensus       333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  412 (606)
T 3t6q_A          333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL  412 (606)
T ss_dssp             CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred             CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence            99987643   4588999999999999999855   3  66889999999999999888 88899999999999999988


Q ss_pred             cccc-cC-ccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcC--ch--HhhhCCCCCCEEeCCCCccccc
Q psy11652        174 SKLN-AN-TFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN--IN--QCFRNLKKLKYLYLHNNNIEFI  247 (325)
Q Consensus       174 ~~~~-~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~--~~~~~~~~L~~L~l~~~~l~~~  247 (325)
                      .... .. +...++|+.|++++|.++...+..+..++ +|++|++++|.+..  ++  ..+..+++|++|++++|.++++
T Consensus       413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  491 (606)
T 3t6q_A          413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP-ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI  491 (606)
T ss_dssp             ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT-TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred             CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC-CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence            7653 33 44459999999999999988888899998 99999999998874  22  3688999999999999999999


Q ss_pred             ccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcccccccccchhhhcccccccccceee
Q psy11652        248 QNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVM  317 (325)
Q Consensus       248 ~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (325)
                      ++..+..+++|+.|++++|+++.+++  +..+++| .|++++|+++++++.......++..+++..|++.+.
T Consensus       492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  562 (606)
T 3t6q_A          492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT  562 (606)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred             ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence            88889999999999999999996554  8999999 999999999999998777777788889999988653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=5.1e-31  Score=249.45  Aligned_cols=299  Identities=21%  Similarity=0.266  Sum_probs=212.2

Q ss_pred             ccchh---hhhccc---ccceEEcCCCcee-eecCCCcCcccccCccEEECCCCcc------------------------
Q psy11652         17 PCSEN---VQISCI---LLMSAENEDNQIA-ELETANWSPEIQNKLTTLFIGENHI------------------------   65 (325)
Q Consensus        17 ~~~~~---~~~~~~---~L~~L~l~~~~i~-~~~~~~~~~~~~~~L~~L~l~~~~~------------------------   65 (325)
                      .|+.|   .++.|.   +++.|+++++.+. .+|. .+ +++ ++|++|+|++|.+                        
T Consensus        65 ~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~-~l-~~L-~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l  141 (636)
T 4eco_A           65 ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD-AI-GQL-TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM  141 (636)
T ss_dssp             CGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECG-GG-GGC-TTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHH
T ss_pred             CcccccCCCCeEEcCCCCEEEEEecCcccCCcCCh-HH-hcC-ccceEEECcCCccccCCccccccccccCchHHHHHHH
Confidence            45568   888883   7999999999888 5665 78 777 8999999988743                        


Q ss_pred             ------------------------------------------------------cccc-cccCCCCccEEEccCCCCcc-
Q psy11652         66 ------------------------------------------------------HQIE-NLNGFRSILWLNMDSNLLQT-   89 (325)
Q Consensus        66 ------------------------------------------------------~~~~-~~~~~~~L~~L~l~~~~~~~-   89 (325)
                                                                            +++| .+.++++|++|++++|.+.. 
T Consensus       142 ~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~  221 (636)
T 4eco_A          142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAE  221 (636)
T ss_dssp             HTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGG
T ss_pred             HhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccc
Confidence                                                                  3456 68889999999999998887 


Q ss_pred             -----------------c-ccc----cCCccEEEeecCcccch--hhhccCCCCCEEEccCCc-cee--ec--CCC----
Q psy11652         90 -----------------L-DSL----PKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNY-IKE--FV--IPN----  136 (325)
Q Consensus        90 -----------------~-~~l----~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~-~~~--~~--~~~----  136 (325)
                                       + ..+    +++|++|++++|.+...  ..+.++++|++|++++|. ++.  +|  +..    
T Consensus       222 ~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~  301 (636)
T 4eco_A          222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA  301 (636)
T ss_dssp             GBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHS
T ss_pred             cccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhcc
Confidence                             5 332    68889999998876665  678888899999999887 764  66  333    


Q ss_pred             --CCCccEEEccCCccccchh--hccCCCCccEEEccCCcCc-ccccCccCCccccEEEcccCCCcccChhhhhCcccc-
Q psy11652        137 --RKHIEKLDLSNNLISTINL--NLNNTYYIKDLILSYNQIS-KLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNST-  210 (325)
Q Consensus       137 --~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~-  210 (325)
                        +++|++|++++|.++.+|.  .++++++|+.|++++|.+. .++ .+...++|+.|++++|.++.++ ..+..++ + 
T Consensus       302 ~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp-~~l~~l~-~~  378 (636)
T 4eco_A          302 PVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIP-ANFCGFT-EQ  378 (636)
T ss_dssp             GGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECC-TTSEEEC-TT
T ss_pred             ccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccccc-Hhhhhhc-cc
Confidence              3888888888888887776  7888888888888888887 666 4545588888888888877554 4567777 6 


Q ss_pred             CCEEEccCCCCcCchHhhhCCC--CCCEEeCCCCcccccccchhc-------cCccCCEEEccCCCCcccCC--CCCCCC
Q psy11652        211 LEFLDLENNRLTNINQCFRNLK--KLKYLYLHNNNIEFIQNNTFE-------HLVNLKSISLSGNKLTRIPD--FIHNKR  279 (325)
Q Consensus       211 L~~L~l~~~~l~~~~~~~~~~~--~L~~L~l~~~~l~~~~~~~l~-------~~~~L~~L~l~~n~l~~l~~--~~~~~~  279 (325)
                      |+.|++++|.+..+|..+...+  +|++|++++|.+++..+..+.       .+++|+.|++++|.++.+|.  +..+++
T Consensus       379 L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~  458 (636)
T 4eco_A          379 VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP  458 (636)
T ss_dssp             CCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCC
T ss_pred             CcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCC
Confidence            8888888887777776554433  666777777666655444444       44566666666666666665  444566


Q ss_pred             CCEEECCCCcCcccccccccchh-------hhcccccccccceeecccc
Q psy11652        280 LSHLNLGYNFLNELILESSIVEN-------EIIDQNMLFNSNAVMEDQF  321 (325)
Q Consensus       280 L~~L~l~~n~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~  321 (325)
                      |+.|++++|.++.+|........       .+..+++..|.+..++..+
T Consensus       459 L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~  507 (636)
T 4eco_A          459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF  507 (636)
T ss_dssp             CSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGG
T ss_pred             CCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhh
Confidence            66666666666655554433222       4555555566555555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=6.6e-30  Score=228.36  Aligned_cols=258  Identities=20%  Similarity=0.238  Sum_probs=217.1

Q ss_pred             cCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCccEEEeecCcccch--hhhccCCCCCEEEc
Q psy11652         53 NKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLSVANNYLVNY--LELNRMTSLKWIVL  124 (325)
Q Consensus        53 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l  124 (325)
                      ++++.|+++++.++.+|  .+.++++|++|++++|.+..+  ..|  +++|++|++++|.+..+  ..+.++++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            89999999999999998  578999999999999999888  466  89999999999999888  56899999999999


Q ss_pred             cCCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCccCCccc--------------
Q psy11652        125 SNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFRNLNV--------------  186 (325)
Q Consensus       125 ~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L--------------  186 (325)
                      ++|.++.+|   +..+++|++|++++|.++.+ +..+..+++|+.|++++|.++.++..  ..++|              
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~l~~L~~L~l~~n~l~~~~  202 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYNLLSTLA  202 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGG--GCTTCSEEECCSSCCSEEE
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccc--cccccceeecccccccccC
Confidence            999999888   46789999999999999988 77899999999999999998865422  22444              


Q ss_pred             -----cEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEE
Q psy11652        187 -----FRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSI  261 (325)
Q Consensus       187 -----~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L  261 (325)
                           +.|++++|.++..+.   ...+ +|+.|++++|.+...+ .+..+++|++|++++|.++++.+..+..+++|+.|
T Consensus       203 ~~~~L~~L~l~~n~l~~~~~---~~~~-~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  277 (390)
T 3o6n_A          203 IPIAVEELDASHNSINVVRG---PVNV-ELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL  277 (390)
T ss_dssp             CCSSCSEEECCSSCCCEEEC---CCCS-SCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred             CCCcceEEECCCCeeeeccc---cccc-cccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence                 455555555544422   1233 7899999999888764 67889999999999999999888889999999999


Q ss_pred             EccCCCCcccCC-CCCCCCCCEEECCCCcCcccccccccchhhhcccccccccceeec
Q psy11652        262 SLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVME  318 (325)
Q Consensus       262 ~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (325)
                      ++++|.++.+|. +..+++|++|++++|+++.+++.. .....+..+++..|++..++
T Consensus       278 ~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~L~~N~i~~~~  334 (390)
T 3o6n_A          278 YISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLK  334 (390)
T ss_dssp             ECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH-HHHTTCSEEECCSSCCCCCC
T ss_pred             ECCCCcCcccCcccCCCCCCCEEECCCCcceecCccc-cccCcCCEEECCCCccceeC
Confidence            999999998887 778899999999999999988764 33456777888899887665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.97  E-value=9.8e-30  Score=232.41  Aligned_cols=283  Identities=25%  Similarity=0.322  Sum_probs=172.0

Q ss_pred             hcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEE
Q psy11652         24 ISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLS  101 (325)
Q Consensus        24 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~  101 (325)
                      ..+++|++|+++++.++.++.  + ..+ ++|++|++++|.+..++.+.++++|++|++++|.+..+..+  +++|++|+
T Consensus        65 ~~l~~L~~L~Ls~n~l~~~~~--~-~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~  140 (466)
T 1o6v_A           65 EYLNNLTQINFSNNQLTDITP--L-KNL-TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE  140 (466)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--G-TTC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             hhhcCCCEEECCCCccCCchh--h-hcc-ccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChHHcCCCCCCEEE
Confidence            357778888888887777765  4 555 77777777777777666667777777777777766666435  66666666


Q ss_pred             eecCcccch---------------------hhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCccccchh----
Q psy11652        102 VANNYLVNY---------------------LELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINL----  155 (325)
Q Consensus       102 l~~~~l~~~---------------------~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~----  155 (325)
                      +++|.+..+                     ..+..+++|++|++++|.+..++ ...+++|++|++++|.+...+.    
T Consensus       141 l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l  220 (466)
T 1o6v_A          141 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL  220 (466)
T ss_dssp             EEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGC
T ss_pred             CCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccccccc
Confidence            666654433                     12445566666666666665555 4455566666666655554421    


Q ss_pred             -----------------hccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccC
Q psy11652        156 -----------------NLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLEN  218 (325)
Q Consensus       156 -----------------~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~  218 (325)
                                       .+..+++|+.|++++|.+...++ +..+++|+.|++++|.+++.++  +..++ +|+.|++++
T Consensus       221 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~L~~  296 (466)
T 1o6v_A          221 TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLT-ALTNLELNE  296 (466)
T ss_dssp             TTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCT-TCSEEECCS
T ss_pred             CCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCC-ccCeEEcCC
Confidence                             23344445555555444444333 2333555555555555555433  44555 666666666


Q ss_pred             CCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCCCCCCCCCCEEECCCCcCcccccccc
Q psy11652        219 NRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESS  298 (325)
Q Consensus       219 ~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~i~~~~~~~~  298 (325)
                      |.+..++. +..+++|+.|++++|.+++..+  +..+++|+.|++++|.++.++.+..+++|+.|++++|+++++++  .
T Consensus       297 n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~  371 (466)
T 1o6v_A          297 NQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--L  371 (466)
T ss_dssp             SCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG--G
T ss_pred             CcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch--h
Confidence            66655544 5566666666776666666544  55667777777777777766556677777777777777777766  2


Q ss_pred             cchhhhcccccccccceeecc
Q psy11652        299 IVENEIIDQNMLFNSNAVMED  319 (325)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~  319 (325)
                      ....++..+++..|.+...|.
T Consensus       372 ~~l~~L~~L~l~~n~~~~~p~  392 (466)
T 1o6v_A          372 ANLTRITQLGLNDQAWTNAPV  392 (466)
T ss_dssp             TTCTTCCEEECCCEEEECCCB
T ss_pred             hcCCCCCEEeccCCcccCCch
Confidence            222344556666666655443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=1.4e-30  Score=246.49  Aligned_cols=269  Identities=18%  Similarity=0.237  Sum_probs=195.7

Q ss_pred             hhcccccceEEcCCCceee------------------ecCCCcCc--ccccCccEEECCCCccc-ccc-cccCCCCccEE
Q psy11652         23 QISCILLMSAENEDNQIAE------------------LETANWSP--EIQNKLTTLFIGENHIH-QIE-NLNGFRSILWL   80 (325)
Q Consensus        23 ~~~~~~L~~L~l~~~~i~~------------------~~~~~~~~--~~~~~L~~L~l~~~~~~-~~~-~~~~~~~L~~L   80 (325)
                      ...+++|++|++++|.++.                  +|. .+ .  .+ ++|++|++++|.+. .+| .+.++++|++|
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l-~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  278 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DL-KWDNL-KDLTDVEVYNCPNLTKLPTFLKALPEMQLI  278 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CC-CGGGC-TTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCch-hh-hhccc-CCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence            3478999999999999998                  888 67 6  67 99999999999865 566 89999999999


Q ss_pred             EccCCC-Ccc--c-ccc--c------CCccEEEeecCcccch-h--hhccCCCCCEEEccCCcce-eec-CCCCCCccEE
Q psy11652         81 NMDSNL-LQT--L-DSL--P------KTMETLSVANNYLVNY-L--ELNRMTSLKWIVLSNNYIK-EFV-IPNRKHIEKL  143 (325)
Q Consensus        81 ~l~~~~-~~~--~-~~l--~------~~L~~L~l~~~~l~~~-~--~~~~~~~L~~L~l~~~~~~-~~~-~~~~~~L~~L  143 (325)
                      ++++|. +..  + ..+  +      ++|++|++++|.+..+ .  .+..+++|++|++++|.++ .+| +..+++|++|
T Consensus       279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L  358 (636)
T 4eco_A          279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASL  358 (636)
T ss_dssp             ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEE
T ss_pred             ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEE
Confidence            999998 775  3 334  3      9999999999999877 4  6999999999999999998 787 5567888888


Q ss_pred             EccCCccccchhhccCCCC-ccEEEccCCcCcccccCccCC--ccccEEEcccCCCcccChhhhh-------CccccCCE
Q psy11652        144 DLSNNLISTINLNLNNTYY-IKDLILSYNQISKLNANTFRN--LNVFRLYLKFNKISEIHDFAFN-------GLNSTLEF  213 (325)
Q Consensus       144 ~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~~~-------~~~~~L~~  213 (325)
                      ++++|.++.+|..+..+++ |+.|++++|.++.++..+...  ++|+.|++++|.+++..+..+.       .++ +|+.
T Consensus       359 ~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~-~L~~  437 (636)
T 4eco_A          359 NLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI-NVSS  437 (636)
T ss_dssp             ECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC-CEEE
T ss_pred             ECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC-CCCE
Confidence            8888888877777888888 888888888887776654433  3677777777777665555554       444 6666


Q ss_pred             EEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCc-------cCCEEEccCCCCcccCC-CC--CCCCCCE
Q psy11652        214 LDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLV-------NLKSISLSGNKLTRIPD-FI--HNKRLSH  282 (325)
Q Consensus       214 L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-------~L~~L~l~~n~l~~l~~-~~--~~~~L~~  282 (325)
                      |++++|.+..+|. .+..+++|++|++++|.++.++...+....       +|+.|++++|.++.+|. +.  .+++|+.
T Consensus       438 L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~  517 (636)
T 4eco_A          438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG  517 (636)
T ss_dssp             EECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCE
T ss_pred             EECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCE
Confidence            6666666665554 334456666666666666655444333222       56666666666665555 33  5556666


Q ss_pred             EECCCCcCccccc
Q psy11652        283 LNLGYNFLNELIL  295 (325)
Q Consensus       283 L~l~~n~i~~~~~  295 (325)
                      |++++|+++++|.
T Consensus       518 L~Ls~N~l~~ip~  530 (636)
T 4eco_A          518 IDLSYNSFSKFPT  530 (636)
T ss_dssp             EECCSSCCSSCCC
T ss_pred             EECCCCCCCCcCh
Confidence            6666666555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=4.9e-30  Score=224.29  Aligned_cols=273  Identities=17%  Similarity=0.212  Sum_probs=230.8

Q ss_pred             ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCccEEE
Q psy11652         28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLS  101 (325)
Q Consensus        28 ~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~  101 (325)
                      +++.++++++.++.+|. .+    .++|+.|++++|.+..++  .|.++++|++|++++|.+..+  ..|  +++|++|+
T Consensus        34 ~l~~l~~~~~~l~~ip~-~~----~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPK-EI----SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCSSCCS-CC----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCccccCC-CC----CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            79999999999999998 44    379999999999999886  799999999999999999887  556  89999999


Q ss_pred             eecCcccch-hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCcccc--c-hhhccCCCCccEEEccCCcCc
Q psy11652        102 VANNYLVNY-LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLIST--I-NLNLNNTYYIKDLILSYNQIS  174 (325)
Q Consensus       102 l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~--~-~~~~~~~~~L~~L~l~~~~l~  174 (325)
                      +++|.+..+ ..+.  ++|++|++++|.++.++   +..+++|++|++++|.++.  . +..+..+ +|+.|++++|.++
T Consensus       109 L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          109 ISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            999998877 3332  89999999999999777   5689999999999999974  3 6777777 9999999999999


Q ss_pred             ccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhc
Q psy11652        175 KLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFE  253 (325)
Q Consensus       175 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~  253 (325)
                      .++....  ++|+.|++++|.++...+..+..++ +|+.|++++|.+..++. .+..+++|+.|++++|.++.++. .+.
T Consensus       186 ~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-~l~  261 (332)
T 2ft3_A          186 GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYS-KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA-GLP  261 (332)
T ss_dssp             SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCT-TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT-TGG
T ss_pred             ccCcccc--CCCCEEECCCCcCCccCHHHhcCCC-CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh-hhh
Confidence            8876554  7999999999999999888899998 99999999999987765 78899999999999999997766 578


Q ss_pred             cCccCCEEEccCCCCcccCC--CCC------CCCCCEEECCCCcCc--ccccccccchhhhcccccccc
Q psy11652        254 HLVNLKSISLSGNKLTRIPD--FIH------NKRLSHLNLGYNFLN--ELILESSIVENEIIDQNMLFN  312 (325)
Q Consensus       254 ~~~~L~~L~l~~n~l~~l~~--~~~------~~~L~~L~l~~n~i~--~~~~~~~~~~~~~~~~~~~~~  312 (325)
                      .+++|+.|++++|.++.++.  +..      .++|+.+++++|++.  .+++..+.....+..+++..|
T Consensus       262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            89999999999999998875  443      367899999999998  566655555555556666554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=4.4e-30  Score=248.16  Aligned_cols=245  Identities=21%  Similarity=0.198  Sum_probs=147.3

Q ss_pred             CCCccEEEccCCCCccc--ccc--cCCccEEEeecCcccch--hhhccCCCCCEEEccCCcce-eec--CCCCCCccEEE
Q psy11652         74 FRSILWLNMDSNLLQTL--DSL--PKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIK-EFV--IPNRKHIEKLD  144 (325)
Q Consensus        74 ~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~-~~~--~~~~~~L~~L~  144 (325)
                      +++|++|++++|.+...  ..+  +++|+.|++++|.+...  ..+..+++|+.|++++|.+. .+|  +..+++|++|+
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  472 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI  472 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence            44455555555554433  233  55666666666655543  45556666666666666655 333  44556666666


Q ss_pred             ccCCccccc-hhhccCCCCccEEEccCCcCc-ccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCc
Q psy11652        145 LSNNLISTI-NLNLNNTYYIKDLILSYNQIS-KLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT  222 (325)
Q Consensus       145 l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~  222 (325)
                      +++|.+++. |..+.++++|+.|++++|.+. .++..+...++|+.|++++|.+++..+..+..++ +|+.|++++|.+.
T Consensus       473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFN  551 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT-TCCEEECCSSEEE
T ss_pred             ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CCCEEECCCCccC
Confidence            666666644 666666666666666666665 3444444446666666666666655555666666 6666666666544


Q ss_pred             -CchHh----------------------------------------------------------------------hhCC
Q psy11652        223 -NINQC----------------------------------------------------------------------FRNL  231 (325)
Q Consensus       223 -~~~~~----------------------------------------------------------------------~~~~  231 (325)
                       .+|..                                                                      +..+
T Consensus       552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l  631 (768)
T 3rgz_A          552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN  631 (768)
T ss_dssp             SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred             CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence             33321                                                                      1223


Q ss_pred             CCCCEEeCCCCcccccccchhccCccCCEEEccCCCCc-ccCC-CCCCCCCCEEECCCCcCcccccccccchhhhccccc
Q psy11652        232 KKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT-RIPD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNM  309 (325)
Q Consensus       232 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~  309 (325)
                      ++|+.|++++|.+++..+..++.++.|+.|++++|.++ .+|. ++.+++|+.|++++|++++..|........+..+++
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l  711 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL  711 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence            45666677777666655566677777777777777776 5555 677777777777777777666655555555666677


Q ss_pred             ccccc-eeecc
Q psy11652        310 LFNSN-AVMED  319 (325)
Q Consensus       310 ~~~~~-~~~~~  319 (325)
                      .+|++ +.+|.
T Consensus       712 s~N~l~g~iP~  722 (768)
T 3rgz_A          712 SNNNLSGPIPE  722 (768)
T ss_dssp             CSSEEEEECCS
T ss_pred             cCCcccccCCC
Confidence            77766 44443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.97  E-value=3.7e-29  Score=228.61  Aligned_cols=260  Identities=26%  Similarity=0.351  Sum_probs=186.5

Q ss_pred             hcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEE
Q psy11652         24 ISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLS  101 (325)
Q Consensus        24 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~  101 (325)
                      .++++++.|+++++.++.++.  + ..+ ++|++|++++|.+..++.+.++++|++|++++|.+..+..+  +++|++|+
T Consensus        43 ~~l~~l~~L~l~~~~i~~l~~--~-~~l-~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~  118 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKSIDG--V-EYL-NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLT  118 (466)
T ss_dssp             HHHHTCCEEECCSSCCCCCTT--G-GGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred             hHhccccEEecCCCCCccCcc--h-hhh-cCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEE
Confidence            357899999999999999886  5 555 99999999999999888899999999999999999888447  89999999


Q ss_pred             eecCcccchhhhccCCCCCEEEccCCcceeec-CC---------------------CCCCccEEEccCCccccchhhccC
Q psy11652        102 VANNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IP---------------------NRKHIEKLDLSNNLISTINLNLNN  159 (325)
Q Consensus       102 l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~---------------------~~~~L~~L~l~~~~~~~~~~~~~~  159 (325)
                      +++|.+.....+.++++|++|++++|.+..++ +.                     .+++|++|++++|.++.++ .+..
T Consensus       119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~  197 (466)
T 1o6v_A          119 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAK  197 (466)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGG
T ss_pred             CCCCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhcc
Confidence            99999988877999999999999999887655 33                     4556666777777666553 3566


Q ss_pred             CCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeC
Q psy11652        160 TYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYL  239 (325)
Q Consensus       160 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l  239 (325)
                      +++|+.|++.+|.+....+ ....++|+.|++++|.+++.+  .+..++ +|+.|++++|.+..++. +..+++|+.|++
T Consensus       198 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~l~~l~-~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l  272 (466)
T 1o6v_A          198 LTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG--TLASLT-NLTDLDLANNQISNLAP-LSGLTKLTELKL  272 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--GGGGCT-TCSEEECCSSCCCCCGG-GTTCTTCSEEEC
T ss_pred             CCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch--hhhcCC-CCCEEECCCCccccchh-hhcCCCCCEEEC
Confidence            6777777777776665544 333466666666666665542  355555 66666666666665544 555666666666


Q ss_pred             CCCcccccccchhccCccCCEEEccCCCCcccCCCCCCCCCCEEECCCCcCccccc
Q psy11652        240 HNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELIL  295 (325)
Q Consensus       240 ~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~i~~~~~  295 (325)
                      ++|.++++++  +..+++|+.|++++|.+..++++..+++|+.|++++|.++++++
T Consensus       273 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~  326 (466)
T 1o6v_A          273 GANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP  326 (466)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG
T ss_pred             CCCccCcccc--ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh
Confidence            6666655543  45555666666666666555445555556666666665555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=7.4e-30  Score=240.01  Aligned_cols=278  Identities=21%  Similarity=0.244  Sum_probs=154.7

Q ss_pred             hcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCc
Q psy11652         24 ISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTM   97 (325)
Q Consensus        24 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L   97 (325)
                      ..+++++.++++++.++.+|...| ..+ ++|++|++++|.+..++  .|.++++|++|++++|.+..+  ..|  +++|
T Consensus        48 l~l~~l~~l~l~~~~l~~lp~~~~-~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  125 (597)
T 3oja_B           48 ITLNNQKIVTFKNSTMRKLPAALL-DSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  125 (597)
T ss_dssp             GGGCCCSEEEESSCEESEECTHHH-HHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccCCCceEEEeeCCCCCCcCHHHH-ccC-CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence            345566666666666666665333 444 56666666666666554  556666666666666666555  233  5666


Q ss_pred             cEEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccchhhccCCC-----------
Q psy11652         98 ETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTINLNLNNTY-----------  161 (325)
Q Consensus        98 ~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----------  161 (325)
                      +.|++++|.+..+  ..+.++++|++|++++|.++.++   +..+++|++|++++|.++.++  +..++           
T Consensus       126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL  203 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSC
T ss_pred             CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCc
Confidence            6666666665555  23456666666666666665444   345566666666666655441  12223           


Q ss_pred             --------CccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCc-hHhhhCCC
Q psy11652        162 --------YIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLK  232 (325)
Q Consensus       162 --------~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~  232 (325)
                              +|+.|++++|.+..++...  .++|+.|++++|.+++.  ..+..++ +|+.|++++|.+..+ |..+..++
T Consensus       204 l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~  278 (597)
T 3oja_B          204 LSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYP-GLVEVDLSYNELEKIMYHPFVKMQ  278 (597)
T ss_dssp             CSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCEEESGGGTTCS
T ss_pred             cccccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--hhhccCC-CCCEEECCCCccCCCCHHHhcCcc
Confidence                    3444445444444333322  14566666666665543  3455555 666666666666533 34556666


Q ss_pred             CCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC-CCCCCCCCEEECCCCcCcccccccccchhhhccccccc
Q psy11652        233 KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLF  311 (325)
Q Consensus       233 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~  311 (325)
                      +|+.|++++|.+++++. .+..+++|+.|++++|.++.+|. +..+++|+.|++++|.++.++...   ...+..+++..
T Consensus       279 ~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~L~~L~l~~  354 (597)
T 3oja_B          279 RLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLST---HHTLKNLTLSH  354 (597)
T ss_dssp             SCCEEECTTSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCT---TCCCSEEECCS
T ss_pred             CCCEEECCCCCCCCCCc-ccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhh---cCCCCEEEeeC
Confidence            66666666666665533 33445666666666666666655 555566666666666666554221   12344455555


Q ss_pred             ccc
Q psy11652        312 NSN  314 (325)
Q Consensus       312 ~~~  314 (325)
                      |++
T Consensus       355 N~~  357 (597)
T 3oja_B          355 NDW  357 (597)
T ss_dssp             SCE
T ss_pred             CCC
Confidence            555

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=6.4e-30  Score=247.00  Aligned_cols=294  Identities=20%  Similarity=0.211  Sum_probs=183.2

Q ss_pred             cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCccc-ccc--cccCCCCccEEEccCCCCccc--ccc--cC-C
Q psy11652         25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIH-QIE--NLNGFRSILWLNMDSNLLQTL--DSL--PK-T   96 (325)
Q Consensus        25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~-~   96 (325)
                      .|++|++|++++|.++......| ..+ ++|++|++++|.+. .+|  .+.++++|++|++++|.+...  ..+  ++ +
T Consensus       292 ~~~~L~~L~Ls~n~l~~~~p~~~-~~l-~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~  369 (768)
T 3rgz_A          292 ACDTLTGLDLSGNHFYGAVPPFF-GSC-SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS  369 (768)
T ss_dssp             TCTTCSEEECCSSEEEECCCGGG-GGC-TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTT
T ss_pred             hcCcCCEEECcCCcCCCccchHH-hcC-CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcC
Confidence            35677777777777764433355 555 77777777777766 555  367777777777777766522  233  22 5


Q ss_pred             ccEEEeecCcccc--------------------------h--hhhccCCCCCEEEccCCcce-eec--CCCCCCccEEEc
Q psy11652         97 METLSVANNYLVN--------------------------Y--LELNRMTSLKWIVLSNNYIK-EFV--IPNRKHIEKLDL  145 (325)
Q Consensus        97 L~~L~l~~~~l~~--------------------------~--~~~~~~~~L~~L~l~~~~~~-~~~--~~~~~~L~~L~l  145 (325)
                      |+.|++++|.+..                          .  ..+.++++|++|++++|.++ .+|  +..+++|++|++
T Consensus       370 L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  449 (768)
T 3rgz_A          370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL  449 (768)
T ss_dssp             CSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             CcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEEC
Confidence            5555555544332                          2  34455555555555555554 333  345556666666


Q ss_pred             cCCccccc-hhhccCCCCccEEEccCCcCcc-cccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCc-
Q psy11652        146 SNNLISTI-NLNLNNTYYIKDLILSYNQISK-LNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT-  222 (325)
Q Consensus       146 ~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~-  222 (325)
                      ++|.+.+. |..+..+++|+.|++.+|.+.. ++..+..+++|+.|++++|.+++..+..+..++ +|+.|++++|.+. 
T Consensus       450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~  528 (768)
T 3rgz_A          450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSG  528 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCEE
T ss_pred             CCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC-CCCEEECCCCcccC
Confidence            66665544 5556666666666666666653 333344446666777777666665566666666 7777777777665 


Q ss_pred             CchHhhhCCCCCCEEeCCCCcccccccc----------------------------------------------------
Q psy11652        223 NINQCFRNLKKLKYLYLHNNNIEFIQNN----------------------------------------------------  250 (325)
Q Consensus       223 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~----------------------------------------------------  250 (325)
                      .+|..+..+++|+.|++++|.+++..|.                                                    
T Consensus       529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  608 (768)
T 3rgz_A          529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS  608 (768)
T ss_dssp             ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred             cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence            5566666777777777777766532111                                                    


Q ss_pred             ------------------hhccCccCCEEEccCCCCc-ccCC-CCCCCCCCEEECCCCcCcccccccccchhhhcccccc
Q psy11652        251 ------------------TFEHLVNLKSISLSGNKLT-RIPD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNML  310 (325)
Q Consensus       251 ------------------~l~~~~~L~~L~l~~n~l~-~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~  310 (325)
                                        .++.+++|+.|++++|+++ .+|. ++.+++|+.|++++|.+++..+........+..+++.
T Consensus       609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs  688 (768)
T 3rgz_A          609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS  688 (768)
T ss_dssp             GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence                              1223456777788888777 5665 7788888888888888887666666666777778888


Q ss_pred             cccce-eecccc
Q psy11652        311 FNSNA-VMEDQF  321 (325)
Q Consensus       311 ~~~~~-~~~~~~  321 (325)
                      .|++. .+|..+
T Consensus       689 ~N~l~g~ip~~l  700 (768)
T 3rgz_A          689 SNKLDGRIPQAM  700 (768)
T ss_dssp             SSCCEECCCGGG
T ss_pred             CCcccCcCChHH
Confidence            88874 566554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=7.1e-30  Score=246.63  Aligned_cols=171  Identities=15%  Similarity=0.143  Sum_probs=133.7

Q ss_pred             hhcccccceEEcCCCceee------------------ecCCCcCc--ccccCccEEECCCCccc-ccc-cccCCCCccEE
Q psy11652         23 QISCILLMSAENEDNQIAE------------------LETANWSP--EIQNKLTTLFIGENHIH-QIE-NLNGFRSILWL   80 (325)
Q Consensus        23 ~~~~~~L~~L~l~~~~i~~------------------~~~~~~~~--~~~~~L~~L~l~~~~~~-~~~-~~~~~~~L~~L   80 (325)
                      ..++++|++|++++|.++.                  +|. .+ +  ++ ++|++|+|++|.+. .+| .+.++++|++|
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l-~f~~L-~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L  520 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-EL-SWSNL-KDLTDVELYNCPNMTQLPDFLYDLPELQSL  520 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CC-CGGGC-TTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh-hh-hhccC-CCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence            3478899999999999998                  777 55 4  67 89999999999754 567 88999999999


Q ss_pred             EccCCC-Ccc--c-ccc---------cCCccEEEeecCcccch-h--hhccCCCCCEEEccCCcceeec-CCCCCCccEE
Q psy11652         81 NMDSNL-LQT--L-DSL---------PKTMETLSVANNYLVNY-L--ELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKL  143 (325)
Q Consensus        81 ~l~~~~-~~~--~-~~l---------~~~L~~L~l~~~~l~~~-~--~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L  143 (325)
                      ++++|. +..  + ..+         +++|+.|++++|.+..+ .  .+.++++|+.|++++|.++.+| +..+++|+.|
T Consensus       521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L  600 (876)
T 4ecn_A          521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDL  600 (876)
T ss_dssp             ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEE
T ss_pred             ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEE
Confidence            999997 775  3 223         45999999999998877 4  6899999999999999988888 7778889999


Q ss_pred             EccCCccccchhhccCCCC-ccEEEccCCcCcccccCccCC--ccccEEEcccCCC
Q psy11652        144 DLSNNLISTINLNLNNTYY-IKDLILSYNQISKLNANTFRN--LNVFRLYLKFNKI  196 (325)
Q Consensus       144 ~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~~~~--~~L~~L~l~~~~l  196 (325)
                      ++++|.++.+|..+..+++ |+.|++++|.++.++..+...  ++|+.|++++|.+
T Consensus       601 ~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l  656 (876)
T 4ecn_A          601 KLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI  656 (876)
T ss_dssp             ECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred             ECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcC
Confidence            9999888866777888888 888888888777665433322  2244444444444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.97  E-value=9.8e-30  Score=239.82  Aligned_cols=201  Identities=20%  Similarity=0.237  Sum_probs=170.1

Q ss_pred             CCCCCEEEccCCcceee---c--CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCccccc--CccCCccccE
Q psy11652        116 MTSLKWIVLSNNYIKEF---V--IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNA--NTFRNLNVFR  188 (325)
Q Consensus       116 ~~~L~~L~l~~~~~~~~---~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~  188 (325)
                      +++|++|++++|.++.+   +  +..+++|++|++++|.++.++..+.++++|+.|++.+|.+...++  .+...++|+.
T Consensus       349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  428 (606)
T 3vq2_A          349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY  428 (606)
T ss_dssp             CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred             CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence            34556666666666543   3  447889999999999999888889999999999999999887655  3445599999


Q ss_pred             EEcccCCCcccChhhhhCccccCCEEEccCCCCcC--chHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCC
Q psy11652        189 LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN--INQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN  266 (325)
Q Consensus       189 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n  266 (325)
                      |++++|.++...+..+..++ +|+.|++++|.+..  +|..+..+++|+.|++++|.+++.++..+..+++|+.|++++|
T Consensus       429 L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  507 (606)
T 3vq2_A          429 LDISYTNTKIDFDGIFLGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN  507 (606)
T ss_dssp             EECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EECcCCCCCccchhhhcCCC-CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence            99999999998888899998 99999999999885  5778899999999999999999988888999999999999999


Q ss_pred             CCccc-CC-CCCCCCCCEEECCCCcCcccccccccchhhhcccccccccceee
Q psy11652        267 KLTRI-PD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVM  317 (325)
Q Consensus       267 ~l~~l-~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (325)
                      .++.+ |. +..+++|+.|++++|+++.+|.........+..+++..|.+.+.
T Consensus       508 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          508 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI  560 (606)
T ss_dssp             CCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred             cCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccC
Confidence            99976 44 89999999999999999999988444434577889999988553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=2.4e-29  Score=219.69  Aligned_cols=258  Identities=25%  Similarity=0.350  Sum_probs=223.4

Q ss_pred             cccceEEcCCCceeeecCCCcCcccccCccEEECCCCccccc-c-cccCCCCccEEEccCCCCccc-ccccCCccEEEee
Q psy11652         27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQI-E-NLNGFRSILWLNMDSNLLQTL-DSLPKTMETLSVA  103 (325)
Q Consensus        27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~~~-~~l~~~L~~L~l~  103 (325)
                      +.+++|+++++.++.++...| ..+ ++|++|++++|.+..+ | .+.++++|++|++++|.+..+ ..+.++|++|+++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~-~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~  129 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDF-KNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH  129 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTT-TTC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECC
T ss_pred             CCCeEEECCCCcCCEeChhhh-ccC-CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECC
Confidence            589999999999999998777 777 9999999999999988 4 899999999999999999888 5557999999999


Q ss_pred             cCcccch--hhhccCCCCCEEEccCCccee--ec---CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCccc
Q psy11652        104 NNYLVNY--LELNRMTSLKWIVLSNNYIKE--FV---IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKL  176 (325)
Q Consensus       104 ~~~l~~~--~~~~~~~~L~~L~l~~~~~~~--~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  176 (325)
                      +|.+...  ..+.++++|++|++++|.+..  +.   +..+++|++|++++|.++.+|..+.  ++|+.|++++|.++.+
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~  207 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKV  207 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEE
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCcc
Confidence            9999888  578999999999999998863  22   5578999999999999998865543  8999999999999887


Q ss_pred             ccCcc-CCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhcc-
Q psy11652        177 NANTF-RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEH-  254 (325)
Q Consensus       177 ~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~-  254 (325)
                      .+..+ ..++|+.|++++|.+++..+..+..++ +|+.|++++|.+..+|..+..+++|++|++++|.+++++...+.. 
T Consensus       208 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~  286 (330)
T 1xku_A          208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP  286 (330)
T ss_dssp             CTGGGTTCTTCCEEECCSSCCCEECTTTGGGST-TCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred             CHHHhcCCCCCCEEECCCCcCceeChhhccCCC-CCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCc
Confidence            55444 459999999999999998888898998 999999999999999998999999999999999999887766653 


Q ss_pred             -----CccCCEEEccCCCCc--ccCC--CCCCCCCCEEECCCCc
Q psy11652        255 -----LVNLKSISLSGNKLT--RIPD--FIHNKRLSHLNLGYNF  289 (325)
Q Consensus       255 -----~~~L~~L~l~~n~l~--~l~~--~~~~~~L~~L~l~~n~  289 (325)
                           .+.++.+++.+|.+.  .+++  +..+.+++.+++++|+
T Consensus       287 ~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence                 368899999999997  3554  8889999999999885

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=2.8e-29  Score=242.54  Aligned_cols=287  Identities=19%  Similarity=0.269  Sum_probs=173.0

Q ss_pred             hcccccceEEcCCCc-eee--ecCCCcCccc------ccCccEEECCCCccccccc---ccCCCCccEEEccCCCCcccc
Q psy11652         24 ISCILLMSAENEDNQ-IAE--LETANWSPEI------QNKLTTLFIGENHIHQIEN---LNGFRSILWLNMDSNLLQTLD   91 (325)
Q Consensus        24 ~~~~~L~~L~l~~~~-i~~--~~~~~~~~~~------~~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~   91 (325)
                      ..+++|++|++++|. ++.  +|. .+ ..+      .++|++|++++|.+..+|.   +.++++|++|++++|.+..++
T Consensus       512 ~~L~~L~~L~Ls~N~~lsg~~iP~-~i-~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp  589 (876)
T 4ecn_A          512 YDLPELQSLNIACNRGISAAQLKA-DW-TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE  589 (876)
T ss_dssp             GGCSSCCEEECTTCTTSCHHHHHH-HH-HHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC
T ss_pred             hCCCCCCEEECcCCCCcccccchH-HH-HhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch
Confidence            467778888887776 664  554 33 333      1477777777777777664   677777777777777776555


Q ss_pred             cc--cCCccEEEeecCcccch-hhhccCCC-CCEEEccCCcceeec--CCCC--CCccEEEccCCccccc-hh---hcc-
Q psy11652         92 SL--PKTMETLSVANNYLVNY-LELNRMTS-LKWIVLSNNYIKEFV--IPNR--KHIEKLDLSNNLISTI-NL---NLN-  158 (325)
Q Consensus        92 ~l--~~~L~~L~l~~~~l~~~-~~~~~~~~-L~~L~l~~~~~~~~~--~~~~--~~L~~L~l~~~~~~~~-~~---~~~-  158 (325)
                      .|  +++|+.|++++|.+..+ ..+..+++ |+.|++++|.++.+|  +...  ++|+.|++++|.+.+. |.   .+. 
T Consensus       590 ~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~  669 (876)
T 4ecn_A          590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD  669 (876)
T ss_dssp             CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred             hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence            55  67777777777777655 55667777 777777777777666  2222  2366666666666543 21   111 


Q ss_pred             -CCCCccEEEccCCcCcccccCcc-CCccccEEEcccCCCcccChhhhhC-------ccccCCEEEccCCCCcCchHhhh
Q psy11652        159 -NTYYIKDLILSYNQISKLNANTF-RNLNVFRLYLKFNKISEIHDFAFNG-------LNSTLEFLDLENNRLTNINQCFR  229 (325)
Q Consensus       159 -~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~-------~~~~L~~L~l~~~~l~~~~~~~~  229 (325)
                       .+++|+.|++++|.++.++..++ .+++|+.|++++|.++.++...+..       ++ +|+.|++++|.+..+|..+.
T Consensus       670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~-~L~~L~Ls~N~L~~lp~~l~  748 (876)
T 4ecn_A          670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY-LLTTIDLRFNKLTSLSDDFR  748 (876)
T ss_dssp             CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGG-GCCEEECCSSCCCCCCGGGS
T ss_pred             ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccC-CccEEECCCCCCccchHHhh
Confidence             23356666666666665555554 3366666666666666554433322       22 56666666666666665554


Q ss_pred             --CCCCCCEEeCCCCcccccccchhccCccCCEEEccC------CCCc-ccCC-CCCCCCCCEEECCCCcCccccccccc
Q psy11652        230 --NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSG------NKLT-RIPD-FIHNKRLSHLNLGYNFLNELILESSI  299 (325)
Q Consensus       230 --~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~------n~l~-~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~  299 (325)
                        .+++|+.|++++|.+++++. .+..+++|+.|++++      |.+. .+|. +..+++|+.|++++|+++.+|.... 
T Consensus       749 ~~~l~~L~~L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~-  826 (876)
T 4ecn_A          749 ATTLPYLSNMDVSYNCFSSFPT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT-  826 (876)
T ss_dssp             TTTCTTCCEEECCSSCCSSCCC-GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC-
T ss_pred             hccCCCcCEEEeCCCCCCccch-hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc-
Confidence              56666666666666666433 455566666666654      4443 4444 5666666666666666655555422 


Q ss_pred             chhhhcccccccccceee
Q psy11652        300 VENEIIDQNMLFNSNAVM  317 (325)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~  317 (325)
                        ..+..+++..|++..+
T Consensus       827 --~~L~~LdLs~N~l~~i  842 (876)
T 4ecn_A          827 --PQLYILDIADNPNISI  842 (876)
T ss_dssp             --SSSCEEECCSCTTCEE
T ss_pred             --CCCCEEECCCCCCCcc
Confidence              2455556666665444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.97  E-value=1.5e-29  Score=236.44  Aligned_cols=102  Identities=19%  Similarity=0.242  Sum_probs=60.6

Q ss_pred             cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCcccccc-cCCccEEEee
Q psy11652         27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTLDSL-PKTMETLSVA  103 (325)
Q Consensus        27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l-~~~L~~L~l~  103 (325)
                      +++++|++++|.++.++...| ..+ ++|++|++++|.++.++  .|.++++|++|++++|.+..++.. +++|++|+++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~-~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls  129 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDI-SFL-SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLS  129 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGT-TTC-TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEECC
T ss_pred             CCcCEEECCCCCccccChhhh-ccC-CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEEECC
Confidence            456666666666666655455 555 66666666666666553  566666666666666666555222 5666666666


Q ss_pred             cCcccch---hhhccCCCCCEEEccCCcce
Q psy11652        104 NNYLVNY---LELNRMTSLKWIVLSNNYIK  130 (325)
Q Consensus       104 ~~~l~~~---~~~~~~~~L~~L~l~~~~~~  130 (325)
                      +|.+..+   ..+.++++|++|++++|.+.
T Consensus       130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             SSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             CCCccccCchHhhcccCcccEEecCCCccc
Confidence            6665553   35566666666666666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.5e-29  Score=234.27  Aligned_cols=103  Identities=16%  Similarity=0.127  Sum_probs=70.8

Q ss_pred             hhcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCccc---ccc--cCCc
Q psy11652         23 QISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTL---DSL--PKTM   97 (325)
Q Consensus        23 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~l--~~~L   97 (325)
                      ...+++|++|++++|.++.++...| ..+ ++|++|++++|.++.+|.. .+++|++|++++|.+..+   ..|  +++|
T Consensus        41 ~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l-~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L  117 (520)
T 2z7x_B           41 ILSLSKLRILIISHNRIQYLDISVF-KFN-QELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQL  117 (520)
T ss_dssp             HTTCTTCCEEECCSSCCCEEEGGGG-TTC-TTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTC
T ss_pred             ccccccccEEecCCCccCCcChHHh-hcc-cCCCEEecCCCceeecCcc-ccCCccEEeccCCccccccchhhhccCCcc
Confidence            3466777777777777777655456 555 7777777777777777633 677777777777777653   345  7777


Q ss_pred             cEEEeecCcccchhhhccCCCC--CEEEccCCcc
Q psy11652         98 ETLSVANNYLVNYLELNRMTSL--KWIVLSNNYI  129 (325)
Q Consensus        98 ~~L~l~~~~l~~~~~~~~~~~L--~~L~l~~~~~  129 (325)
                      ++|++++|.+.. ..+..+++|  ++|++++|.+
T Consensus       118 ~~L~L~~n~l~~-~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B          118 KFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CEEEEEESSCCG-GGGGGGTTSCEEEEEEEECTT
T ss_pred             eEEEecCcccch-hhccccccceeeEEEeecccc
Confidence            777777776655 345556666  7777777666

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=4.9e-29  Score=233.29  Aligned_cols=160  Identities=21%  Similarity=0.241  Sum_probs=106.4

Q ss_pred             hccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccCh-hhhhCccccCCEEEccCCCCc-CchHhhhCCCC
Q psy11652        156 NLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHD-FAFNGLNSTLEFLDLENNRLT-NINQCFRNLKK  233 (325)
Q Consensus       156 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~  233 (325)
                      .+.++++|+.|++++|.+..++..+..+++|+.|++++|.+....+ ..+..++ +|+.|++++|.+. ..+..+..+++
T Consensus       368 ~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~  446 (570)
T 2z63_A          368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSS  446 (570)
T ss_dssp             HHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCT-TCCEEECTTSCCEECCTTTTTTCTT
T ss_pred             cccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCC-CCCEEeCcCCcccccchhhhhcCCc
Confidence            3444455555555555554444443344666666666666655433 3456666 7777777777766 34456777778


Q ss_pred             CCEEeCCCCccc-ccccchhccCccCCEEEccCCCCccc-CC-CCCCCCCCEEECCCCcCcccccccccchhhhcccccc
Q psy11652        234 LKYLYLHNNNIE-FIQNNTFEHLVNLKSISLSGNKLTRI-PD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNML  310 (325)
Q Consensus       234 L~~L~l~~~~l~-~~~~~~l~~~~~L~~L~l~~n~l~~l-~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~  310 (325)
                      |++|++++|.++ +..+..+..+++|+.|++++|.++.+ |. +..+++|+.|++++|+++++++........+..+++.
T Consensus       447 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  526 (570)
T 2z63_A          447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH  526 (570)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEec
Confidence            888888888776 33445677778888888888888866 43 7778888888888888888877665555666777777


Q ss_pred             ccccee
Q psy11652        311 FNSNAV  316 (325)
Q Consensus       311 ~~~~~~  316 (325)
                      .|++.+
T Consensus       527 ~N~~~~  532 (570)
T 2z63_A          527 TNPWDC  532 (570)
T ss_dssp             SSCBCC
T ss_pred             CCcccC
Confidence            777744

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.97  E-value=1.5e-28  Score=234.84  Aligned_cols=293  Identities=22%  Similarity=0.253  Sum_probs=213.8

Q ss_pred             hhcccccceEEcCCCceeeecCCCcCcccccCccEEECC---------------------------------CCcccccc
Q psy11652         23 QISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIG---------------------------------ENHIHQIE   69 (325)
Q Consensus        23 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~---------------------------------~~~~~~~~   69 (325)
                      ...+++|++|++++|.++.++...| ..+ ++|++|+++                                 +|.+..++
T Consensus       268 ~~~l~~L~~L~L~~n~l~~~~~~~~-~~l-~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~  345 (680)
T 1ziw_A          268 FAWLPQLEYFFLEYNNIQHLFSHSL-HGL-FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK  345 (680)
T ss_dssp             TTTCTTCCEEECCSCCBSEECTTTT-TTC-TTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC
T ss_pred             ccCcccccEeeCCCCccCccChhhh-cCC-CCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC
Confidence            3467888888888888887665455 444 555555554                                 44444333


Q ss_pred             --cccCCCCccEEEccCCCCcc--c--ccc----cCCccEEEeecCcccch--hhhccCCCCCEEEccCCcce-eec---
Q psy11652         70 --NLNGFRSILWLNMDSNLLQT--L--DSL----PKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIK-EFV---  133 (325)
Q Consensus        70 --~~~~~~~L~~L~l~~~~~~~--~--~~l----~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~-~~~---  133 (325)
                        .|.++++|++|++++|.+..  +  ..|    .++|+.|++++|.+..+  ..+..+++|+.|++++|.+. .++   
T Consensus       346 ~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  425 (680)
T 1ziw_A          346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE  425 (680)
T ss_dssp             TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGG
T ss_pred             hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccc
Confidence              34444555555554443211  1  111    24566666666666555  56677778888888888776 343   


Q ss_pred             CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCc---ccccCccCCccccEEEcccCCCcccChhhhhCccc
Q psy11652        134 IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQIS---KLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNS  209 (325)
Q Consensus       134 ~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~---~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  209 (325)
                      +..+++|++|++++|.+..+ +..|..+++|+.|++.+|.+.   ..+..+..+++|+.|++++|.++.+++..|..++ 
T Consensus       426 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~-  504 (680)
T 1ziw_A          426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE-  504 (680)
T ss_dssp             GTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-
T ss_pred             ccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc-
Confidence            55777888888888887776 667778888888888887765   3444455558999999999999988888888888 


Q ss_pred             cCCEEEccCCCCcCchH---------hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCC
Q psy11652        210 TLEFLDLENNRLTNINQ---------CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNK  278 (325)
Q Consensus       210 ~L~~L~l~~~~l~~~~~---------~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~  278 (325)
                      +|+.|++++|.+..++.         .+..+++|+.|++++|.++.+++..+.++++|+.|++++|.++.+|+  +..++
T Consensus       505 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~  584 (680)
T 1ziw_A          505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV  584 (680)
T ss_dssp             TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCC
Confidence            99999999998875532         36788999999999999998888788999999999999999998887  78899


Q ss_pred             CCCEEECCCCcCccccccccc-chhhhcccccccccceeec
Q psy11652        279 RLSHLNLGYNFLNELILESSI-VENEIIDQNMLFNSNAVME  318 (325)
Q Consensus       279 ~L~~L~l~~n~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  318 (325)
                      +|+.|++++|.++.+++.... ....+..+++..|.+.+-.
T Consensus       585 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c  625 (680)
T 1ziw_A          585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC  625 (680)
T ss_dssp             TCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred             CCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence            999999999999999887654 4556777888888885544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=5.7e-29  Score=233.98  Aligned_cols=258  Identities=20%  Similarity=0.253  Sum_probs=216.8

Q ss_pred             cCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCccEEEeecCcccch--hhhccCCCCCEEEc
Q psy11652         53 NKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLSVANNYLVNY--LELNRMTSLKWIVL  124 (325)
Q Consensus        53 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l  124 (325)
                      ++++.|+++++.+..+|  .+.++++|++|++++|.+..+  ..|  +++|+.|++++|.+..+  ..+.++++|++|++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            79999999999999998  578899999999999999888  466  89999999999999888  56799999999999


Q ss_pred             cCCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCC-----
Q psy11652        125 SNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNK-----  195 (325)
Q Consensus       125 ~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~-----  195 (325)
                      ++|.++.+|   +..+++|++|++++|.++.+ +..|.++++|+.|++++|.++.++..  ..++|+.|++++|.     
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~l~~L~~L~l~~n~l~~l~  208 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYNLLSTLA  208 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG--GCTTCSEEECCSSCCSEEE
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh--hhhhhhhhhcccCcccccc
Confidence            999999888   46899999999999999988 77899999999999999998876432  23455555555544     


Q ss_pred             --------------CcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEE
Q psy11652        196 --------------ISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSI  261 (325)
Q Consensus       196 --------------l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L  261 (325)
                                    ++..+..   .. ++|+.|++++|.+... ..+..+++|+.|++++|.++++.+..++.+++|+.|
T Consensus       209 ~~~~L~~L~ls~n~l~~~~~~---~~-~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  283 (597)
T 3oja_B          209 IPIAVEELDASHNSINVVRGP---VN-VELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL  283 (597)
T ss_dssp             CCTTCSEEECCSSCCCEEECS---CC-SCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred             CCchhheeeccCCcccccccc---cC-CCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence                          4433221   12 3788888888888765 467889999999999999999888889999999999


Q ss_pred             EccCCCCcccCC-CCCCCCCCEEECCCCcCcccccccccchhhhcccccccccceeec
Q psy11652        262 SLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVME  318 (325)
Q Consensus       262 ~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (325)
                      ++++|.++.+|. +..+++|+.|++++|.++.+|... .....+..+++..|.+..++
T Consensus       284 ~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~-~~l~~L~~L~L~~N~l~~~~  340 (597)
T 3oja_B          284 YISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLK  340 (597)
T ss_dssp             ECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH-HHHTTCSEEECCSSCCCCCC
T ss_pred             ECCCCCCCCCCcccccCCCCcEEECCCCCCCccCccc-ccCCCCCEEECCCCCCCCcC
Confidence            999999999888 777899999999999999988764 34456778888899886654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.97  E-value=2.3e-29  Score=234.62  Aligned_cols=266  Identities=19%  Similarity=0.245  Sum_probs=147.3

Q ss_pred             ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc-c-cc--cCCccEEE
Q psy11652         28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL-D-SL--PKTMETLS  101 (325)
Q Consensus        28 ~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~-~-~l--~~~L~~L~  101 (325)
                      ++++|+++++.++.++...| ..+ ++|++|++++|.+..++  +|.++++|++|++++|.+..+ . .|  +++|++|+
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~-~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDL-RAC-ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTT-SSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CccEEECcCCccCccChhhh-hcC-CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            55555555555555544344 444 55555555555555544  455555555555555555544 2 23  55555555


Q ss_pred             eecCcccch---hhhccCCCCCEEEccCCc-ceeec---CCCCCCccEEEccCCccccc-hhhc----------------
Q psy11652        102 VANNYLVNY---LELNRMTSLKWIVLSNNY-IKEFV---IPNRKHIEKLDLSNNLISTI-NLNL----------------  157 (325)
Q Consensus       102 l~~~~l~~~---~~~~~~~~L~~L~l~~~~-~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~----------------  157 (325)
                      +++|.+...   ..+.++++|++|++++|. +..++   +..+++|++|++++|.++.. +..+                
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES  184 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence            555555432   344555555555555554 33333   33445555555555554443 3333                


Q ss_pred             --------cCCCCccEEEccCCcCcccc---cCccC--------------------------------------------
Q psy11652        158 --------NNTYYIKDLILSYNQISKLN---ANTFR--------------------------------------------  182 (325)
Q Consensus       158 --------~~~~~L~~L~l~~~~l~~~~---~~~~~--------------------------------------------  182 (325)
                              ..+++|+.|++++|.+...+   .....                                            
T Consensus       185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~  264 (549)
T 2z81_A          185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN  264 (549)
T ss_dssp             TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred             cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence                    34667777777777665431   00000                                            


Q ss_pred             --------------------------------------------CccccEEEcccCCCcccChhhhhCccccCCEEEccC
Q psy11652        183 --------------------------------------------NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLEN  218 (325)
Q Consensus       183 --------------------------------------------~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~  218 (325)
                                                                  ..+++.|++++|.++.++...+..++ +|+.|++++
T Consensus       265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~-~L~~L~Ls~  343 (549)
T 2z81_A          265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK-SLEFLDLSE  343 (549)
T ss_dssp             CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCT-TCCEEECCS
T ss_pred             ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCc-cccEEEccC
Confidence                                                        02344444444444444443334565 777777777


Q ss_pred             CCCcC-chH---hhhCCCCCCEEeCCCCccccccc--chhccCccCCEEEccCCCCcccCC-CCCCCCCCEEECCCCcCc
Q psy11652        219 NRLTN-INQ---CFRNLKKLKYLYLHNNNIEFIQN--NTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLN  291 (325)
Q Consensus       219 ~~l~~-~~~---~~~~~~~L~~L~l~~~~l~~~~~--~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~  291 (325)
                      |.+.. +|.   .+..+++|++|++++|.++++++  ..+..+++|+.|++++|+++.+|. +..+++|+.|++++|.++
T Consensus       344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~  423 (549)
T 2z81_A          344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR  423 (549)
T ss_dssp             SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS
T ss_pred             CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcc
Confidence            77663 222   25566777777777777766543  346667777777777777777776 666677777777777766


Q ss_pred             ccccc
Q psy11652        292 ELILE  296 (325)
Q Consensus       292 ~~~~~  296 (325)
                      .++..
T Consensus       424 ~l~~~  428 (549)
T 2z81_A          424 VVKTC  428 (549)
T ss_dssp             CCCTT
T ss_pred             cccch
Confidence            65543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3.7e-29  Score=218.72  Aligned_cols=257  Identities=23%  Similarity=0.336  Sum_probs=221.8

Q ss_pred             cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc-ccccCCccEEEee
Q psy11652         27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL-DSLPKTMETLSVA  103 (325)
Q Consensus        27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~-~~l~~~L~~L~l~  103 (325)
                      +++++|+++++.++.++...| ..+ ++|++|++++|.++.++  .+.++++|++|++++|.+..+ ..+.++|++|+++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~-~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~  131 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDF-KGL-QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIH  131 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTT-TTC-TTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECC
T ss_pred             CCCeEEECCCCcCCccCHhHh-hCC-CCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECC
Confidence            489999999999999987678 777 99999999999999884  899999999999999999887 4457999999999


Q ss_pred             cCcccch--hhhccCCCCCEEEccCCccee--e-c--CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCccc
Q psy11652        104 NNYLVNY--LELNRMTSLKWIVLSNNYIKE--F-V--IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKL  176 (325)
Q Consensus       104 ~~~l~~~--~~~~~~~~L~~L~l~~~~~~~--~-~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  176 (325)
                      +|.+..+  ..+.++++|++|++++|.++.  + +  +..+ +|++|++++|.++.+|..+.  ++|+.|++++|.++.+
T Consensus       132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~  208 (332)
T 2ft3_A          132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAI  208 (332)
T ss_dssp             SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCC
T ss_pred             CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCcc
Confidence            9999888  568999999999999999863  2 2  3344 99999999999998865543  7899999999999987


Q ss_pred             ccCcc-CCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhcc-
Q psy11652        177 NANTF-RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEH-  254 (325)
Q Consensus       177 ~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~-  254 (325)
                      ++..+ ..++|+.|++++|.+++.++..+..++ +|+.|++++|.+..+|..+..+++|++|++++|.++.++...+.. 
T Consensus       209 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  287 (332)
T 2ft3_A          209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP-TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV  287 (332)
T ss_dssp             CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT-TCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred             CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC-CCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHcccc
Confidence            75444 459999999999999999888899998 999999999999999988999999999999999999887766654 


Q ss_pred             -----CccCCEEEccCCCCc--ccCC--CCCCCCCCEEECCCCc
Q psy11652        255 -----LVNLKSISLSGNKLT--RIPD--FIHNKRLSHLNLGYNF  289 (325)
Q Consensus       255 -----~~~L~~L~l~~n~l~--~l~~--~~~~~~L~~L~l~~n~  289 (325)
                           .+.|+.+++.+|.+.  .+++  +..+++|+.+++++|+
T Consensus       288 ~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence                 367899999999998  5555  8899999999999875

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.1e-28  Score=228.45  Aligned_cols=102  Identities=22%  Similarity=0.283  Sum_probs=64.1

Q ss_pred             cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCcccccc-cCCccEEEee
Q psy11652         27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTLDSL-PKTMETLSVA  103 (325)
Q Consensus        27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l-~~~L~~L~l~  103 (325)
                      +++++|++++|.++.++...| ..+ ++|++|++++|.++.++  .|.++++|++|++++|.+..++.. +++|++|+++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~-~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~   98 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDI-LSL-SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLS   98 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHH-TTC-TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEECC
T ss_pred             ccccEEECCCCcccccChhhc-ccc-ccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEecc
Confidence            566666666666666654345 444 66666666666666653  566666666666666666655222 6666666666


Q ss_pred             cCcccch---hhhccCCCCCEEEccCCcce
Q psy11652        104 NNYLVNY---LELNRMTSLKWIVLSNNYIK  130 (325)
Q Consensus       104 ~~~l~~~---~~~~~~~~L~~L~l~~~~~~  130 (325)
                      +|.+..+   ..+.++++|++|++++|.+.
T Consensus        99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           99 FNAFDALPICKEFGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             SSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred             CCccccccchhhhccCCcceEEEecCcccc
Confidence            6666553   45666666666666666654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.97  E-value=7.1e-29  Score=231.27  Aligned_cols=107  Identities=20%  Similarity=0.307  Sum_probs=90.8

Q ss_pred             hhcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc---ccc--cC
Q psy11652         23 QISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL---DSL--PK   95 (325)
Q Consensus        23 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~---~~l--~~   95 (325)
                      ...+++|++|++++|.++.++...| ..+ ++|++|++++|.+..++  .+.++++|++|++++|.+..+   ..+  ++
T Consensus        46 ~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~  123 (549)
T 2z81_A           46 LRACANLQVLILKSSRINTIEGDAF-YSL-GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT  123 (549)
T ss_dssp             TSSCTTCCEEECTTSCCCEECTTTT-TTC-TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred             hhcCCcccEEECCCCCcCccChhhc-ccc-ccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence            4588999999999999999987678 777 89999999999999887  599999999999999998864   445  88


Q ss_pred             CccEEEeecCc-ccch--hhhccCCCCCEEEccCCccee
Q psy11652         96 TMETLSVANNY-LVNY--LELNRMTSLKWIVLSNNYIKE  131 (325)
Q Consensus        96 ~L~~L~l~~~~-l~~~--~~~~~~~~L~~L~l~~~~~~~  131 (325)
                      +|++|++++|. +..+  ..+.++++|++|++++|.++.
T Consensus       124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A          124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence            99999999987 4444  467888888888888887764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.96  E-value=5.1e-28  Score=231.10  Aligned_cols=290  Identities=24%  Similarity=0.325  Sum_probs=195.2

Q ss_pred             cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCc---------cc--ccc
Q psy11652         27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQ---------TL--DSL   93 (325)
Q Consensus        27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~---------~~--~~l   93 (325)
                      ++|++|++++|.++.++...| ..+ ++|++|++++|.+..++  .+.++++|++|+++++...         .+  ..|
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~-~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~  325 (680)
T 1ziw_A          248 TNLTMLDLSYNNLNVVGNDSF-AWL-PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF  325 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTT-TTC-TTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTT
T ss_pred             CCCCEEECCCCCcCccCcccc-cCc-ccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhc
Confidence            459999999999999987677 777 99999999999998765  7888999999999876433         11  134


Q ss_pred             --cCCccEEEeecCcccch--hhhccCCCCCEEEccCCcce--eec---CC--CCCCccEEEccCCccccc-hhhccCCC
Q psy11652         94 --PKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIK--EFV---IP--NRKHIEKLDLSNNLISTI-NLNLNNTY  161 (325)
Q Consensus        94 --~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~--~~~---~~--~~~~L~~L~l~~~~~~~~-~~~~~~~~  161 (325)
                        +++|+.|++++|.+..+  ..+.++++|++|++++|.+.  .++   +.  ..++|+.|++++|.++.+ +..|.+++
T Consensus       326 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  405 (680)
T 1ziw_A          326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG  405 (680)
T ss_dssp             TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred             ccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC
Confidence              78888888888877776  45677777777777766432  222   00  113455555555554444 44444445


Q ss_pred             CccEEEccCCc-------------------------CcccccCccCC-ccccEEEcccCCCc--ccChhhhhCccccCCE
Q psy11652        162 YIKDLILSYNQ-------------------------ISKLNANTFRN-LNVFRLYLKFNKIS--EIHDFAFNGLNSTLEF  213 (325)
Q Consensus       162 ~L~~L~l~~~~-------------------------l~~~~~~~~~~-~~L~~L~l~~~~l~--~~~~~~~~~~~~~L~~  213 (325)
                      +|+.|++++|.                         +..+.+..+.. ++|+.|++++|.+.  +..+..+..++ +|+.
T Consensus       406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~-~L~~  484 (680)
T 1ziw_A          406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR-NLTI  484 (680)
T ss_dssp             TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT-TCCE
T ss_pred             CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC-CCCE
Confidence            55555555444                         44333333322 55555555555443  22344566666 7777


Q ss_pred             EEccCCCCcCchH-hhhCCCCCCEEeCCCCccccccc--------chhccCccCCEEEccCCCCcccCC--CCCCCCCCE
Q psy11652        214 LDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQN--------NTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSH  282 (325)
Q Consensus       214 L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~--------~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~  282 (325)
                      |++++|.+..++. .+..+++|++|++++|.++++..        ..+.++++|+.|++++|.++.+|.  +..+++|+.
T Consensus       485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~  564 (680)
T 1ziw_A          485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI  564 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence            7777777776654 56777778888888777765422        235667788888888888887776  778888888


Q ss_pred             EECCCCcCcccccccccchhhhcccccccccceeecc
Q psy11652        283 LNLGYNFLNELILESSIVENEIIDQNMLFNSNAVMED  319 (325)
Q Consensus       283 L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (325)
                      |++++|.++.+++..+.....+..+++..|++..++.
T Consensus       565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~  601 (680)
T 1ziw_A          565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK  601 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred             eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh
Confidence            8888888888888766666677777888887766553

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=3.6e-28  Score=227.12  Aligned_cols=288  Identities=17%  Similarity=0.124  Sum_probs=192.1

Q ss_pred             hhhcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCccc---ccc--cCC
Q psy11652         22 VQISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTL---DSL--PKT   96 (325)
Q Consensus        22 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~l--~~~   96 (325)
                      ....+++|++|++++|.++.++...| ..+ ++|++|++++|.++.+|.. .+++|++|++++|.+..+   ..|  +++
T Consensus        71 ~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l-~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~  147 (562)
T 3a79_B           71 DISFLSELRVLRLSHNRIRSLDFHVF-LFN-QDLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTK  147 (562)
T ss_dssp             GTTTCTTCCEEECCSCCCCEECTTTT-TTC-TTCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTT
T ss_pred             hhccCCCccEEECCCCCCCcCCHHHh-CCC-CCCCEEECCCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCc
Confidence            44588899999999999999977678 777 8999999999999998844 899999999999998876   356  899


Q ss_pred             ccEEEeecCcccchhhhccCCCC--CEEEccCCcc--eee-c--CC--------------------------CC------
Q psy11652         97 METLSVANNYLVNYLELNRMTSL--KWIVLSNNYI--KEF-V--IP--------------------------NR------  137 (325)
Q Consensus        97 L~~L~l~~~~l~~~~~~~~~~~L--~~L~l~~~~~--~~~-~--~~--------------------------~~------  137 (325)
                      |++|++++|.+... .+..+++|  ++|++++|.+  +.. |  +.                          .+      
T Consensus       148 L~~L~L~~n~l~~~-~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L  226 (562)
T 3a79_B          148 LTFLGLSAAKFRQL-DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS  226 (562)
T ss_dssp             CCEEEEECSBCCTT-TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEE
T ss_pred             ccEEecCCCccccC-chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEe
Confidence            99999999887653 33444444  7777777765  210 0  00                          11      


Q ss_pred             -------------------------------------------------CCccEEEccCCcccc-chhhc----------
Q psy11652        138 -------------------------------------------------KHIEKLDLSNNLIST-INLNL----------  157 (325)
Q Consensus       138 -------------------------------------------------~~L~~L~l~~~~~~~-~~~~~----------  157 (325)
                                                                       .+|++|++++|.+++ +|..+          
T Consensus       227 ~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~  306 (562)
T 3a79_B          227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS  306 (562)
T ss_dssp             EEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCE
T ss_pred             cccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchh
Confidence                                                             145555555555442 22222          


Q ss_pred             -------------------------------------------cCCCCccEEEccCCcCcc-cccCccCCccccEEEccc
Q psy11652        158 -------------------------------------------NNTYYIKDLILSYNQISK-LNANTFRNLNVFRLYLKF  193 (325)
Q Consensus       158 -------------------------------------------~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~  193 (325)
                                                                 ..+++|+.|++++|.++. .+..+...++|+.|++++
T Consensus       307 L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  386 (562)
T 3a79_B          307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR  386 (562)
T ss_dssp             EEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCS
T ss_pred             eehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCC
Confidence                                                       445566666666666654 233333346666666666


Q ss_pred             CCCcccCh--hhhhCccccCCEEEccCCCCcC-chH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCc
Q psy11652        194 NKISEIHD--FAFNGLNSTLEFLDLENNRLTN-INQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT  269 (325)
Q Consensus       194 ~~l~~~~~--~~~~~~~~~L~~L~l~~~~l~~-~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~  269 (325)
                      |.+++++.  ..+..++ +|+.|++++|.+.. +|. .+..+++|++|++++|.+++..+..+.  ++|+.|++++|+++
T Consensus       387 N~l~~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~  463 (562)
T 3a79_B          387 NGLKNFFKVALMTKNMS-SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM  463 (562)
T ss_dssp             SCCCBTTHHHHTTTTCT-TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC
T ss_pred             CCcCCcccchhhhcCCC-CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc
Confidence            66665432  3455665 66666666666664 554 355666666667666666543332222  57778888888877


Q ss_pred             ccCC-CCCCCCCCEEECCCCcCcccccccccchhhhccccccccccee
Q psy11652        270 RIPD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAV  316 (325)
Q Consensus       270 ~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (325)
                      .+|. +..+++|+.|++++|+++.+|+........+..+++..|.+.+
T Consensus       464 ~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          464 SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred             ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence            7776 5577888888888888887777644444556667777777643

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.96  E-value=1.4e-27  Score=217.12  Aligned_cols=205  Identities=24%  Similarity=0.348  Sum_probs=129.5

Q ss_pred             cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEEe
Q psy11652         25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSV  102 (325)
Q Consensus        25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l  102 (325)
                      .+++|++|+++++.++.+|  .+ ..+ ++|++|++++|.+++++ +..+++|++|++++|.+..++ +  +++|++|++
T Consensus        40 ~l~~L~~L~Ls~n~l~~~~--~l-~~l-~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L  113 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDMT--GI-EKL-TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNC  113 (457)
T ss_dssp             HHTTCCEEECCSSCCCCCT--TG-GGC-TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEEC
T ss_pred             HcCCCCEEEccCCCcccCh--hh-ccc-CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee-cCCCCcCCEEEC
Confidence            6778888888888888776  35 555 78888888888888775 777888888888888777663 4  778888888


Q ss_pred             ecCcccchhhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCc-cccchhhccCCCCccEEEccCCcCcccccCcc
Q psy11652        103 ANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNL-ISTINLNLNNTYYIKDLILSYNQISKLNANTF  181 (325)
Q Consensus       103 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  181 (325)
                      ++|.++.+. +..+++|++|++++|.++.++...+++|++|++++|. ++.+  .+..+++|+.|++++|.++.++  +.
T Consensus       114 ~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~  188 (457)
T 3bz5_A          114 DTNKLTKLD-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VS  188 (457)
T ss_dssp             CSSCCSCCC-CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CT
T ss_pred             CCCcCCeec-CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cc
Confidence            888776653 6677777777777777776665556666666666663 2222  2445555555555555555543  22


Q ss_pred             CCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccc
Q psy11652        182 RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEF  246 (325)
Q Consensus       182 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~  246 (325)
                      ..++|+.|++++|.+++.   .+..++ +|+.|++++|.+..+|  +..+++|+.|++++|.+++
T Consensus       189 ~l~~L~~L~l~~N~l~~~---~l~~l~-~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          189 QNKLLNRLNCDTNNITKL---DLNQNI-QLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             TCTTCCEEECCSSCCSCC---CCTTCT-TCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC
T ss_pred             cCCCCCEEECcCCcCCee---ccccCC-CCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCC
Confidence            335555555555555444   133444 5555555555554443  4444445555555444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=3.2e-28  Score=237.44  Aligned_cols=267  Identities=21%  Similarity=0.255  Sum_probs=152.7

Q ss_pred             ccccceEEcCCCceeeecCCCcCcccccCccEEECCCC-ccccc-c-cccCCCCccEEEccCCCCccc--ccc--cCCcc
Q psy11652         26 CILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGEN-HIHQI-E-NLNGFRSILWLNMDSNLLQTL--DSL--PKTME   98 (325)
Q Consensus        26 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~-~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~   98 (325)
                      .+++++|++++|.|+.++...| ..+ ++|++|++++| .+..+ | +|.++++|++|++++|.+..+  ..|  +++|+
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~-~~l-~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  100 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSF-PFL-EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF  100 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSC-SSC-CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred             CCCcCEEECCCCcCCccChhHC-ccc-ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence            3567777777777776665566 555 67777777766 33344 2 667777777777777776665  444  67777


Q ss_pred             EEEeecCcccch--h--hhccCCCCCEEEccCCcceeec----CCCCCCccEEEccCCccccc-hhhccCC--CC-----
Q psy11652         99 TLSVANNYLVNY--L--ELNRMTSLKWIVLSNNYIKEFV----IPNRKHIEKLDLSNNLISTI-NLNLNNT--YY-----  162 (325)
Q Consensus        99 ~L~l~~~~l~~~--~--~~~~~~~L~~L~l~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~-~~~~~~~--~~-----  162 (325)
                      +|++++|.+...  .  .+.++++|++|++++|.++.++    +..+++|++|++++|.++.. +..+..+  ++     
T Consensus       101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~  180 (844)
T 3j0a_A          101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS  180 (844)
T ss_dssp             CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred             EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence            777777766552  2  3666777777777777666432    44666777777777666554 3333333  34     


Q ss_pred             -------------------------ccEEEccCCcCcc-cccCc-----------------------------------c
Q psy11652        163 -------------------------IKDLILSYNQISK-LNANT-----------------------------------F  181 (325)
Q Consensus       163 -------------------------L~~L~l~~~~l~~-~~~~~-----------------------------------~  181 (325)
                                               |+.|++++|.+.. .+..+                                   +
T Consensus       181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f  260 (844)
T 3j0a_A          181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF  260 (844)
T ss_dssp             ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred             CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence                                     4555555543321 00000                                   0


Q ss_pred             -C--CccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCch-HhhhCCCCCCEEeCCCCcccccccchhccCcc
Q psy11652        182 -R--NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVN  257 (325)
Q Consensus       182 -~--~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~  257 (325)
                       .  .++++.|++++|.+....+..|..++ +|+.|++++|.+..++ ..+..+++|++|++++|.++++.+..+.++++
T Consensus       261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  339 (844)
T 3j0a_A          261 AGLARSSVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK  339 (844)
T ss_dssp             TTTTTSCCCEEECTTCCCCEECSCCSSSCC-CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred             hccccCCccEEECCCCcccccChhhhhcCC-CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence             0  13455555555555555555555555 5566666555555332 34555555666666666555555555555556


Q ss_pred             CCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCccccc
Q psy11652        258 LKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELIL  295 (325)
Q Consensus       258 L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~  295 (325)
                      |+.|++++|.+..+++  +..+++|+.|++++|.++.++.
T Consensus       340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~  379 (844)
T 3j0a_A          340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF  379 (844)
T ss_dssp             CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS
T ss_pred             CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC
Confidence            6666666665555544  5555566666666665555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=4.1e-28  Score=213.89  Aligned_cols=268  Identities=18%  Similarity=0.239  Sum_probs=225.8

Q ss_pred             hhcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCC
Q psy11652         23 QISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKT   96 (325)
Q Consensus        23 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~   96 (325)
                      ...|+.....+++++.++.+|. .+    .++|++|++++|.++.++  .+.++++|++|++++|.+..+  ..|  +++
T Consensus        27 ~~~C~~~~~c~~~~~~l~~iP~-~~----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (353)
T 2z80_A           27 SLSCDRNGICKGSSGSLNSIPS-GL----TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS  101 (353)
T ss_dssp             CCEECTTSEEECCSTTCSSCCT-TC----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             CCCCCCCeEeeCCCCCcccccc-cc----cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence            3467777778999999999998 44    379999999999999988  699999999999999999888  456  899


Q ss_pred             ccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec----CCCCCCccEEEccCC-ccccc-hhhccCCCCccEEEc
Q psy11652         97 METLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV----IPNRKHIEKLDLSNN-LISTI-NLNLNNTYYIKDLIL  168 (325)
Q Consensus        97 L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~L~~L~l  168 (325)
                      |++|++++|.++.+  ..+.++++|++|++++|.++.++    +..+++|++|++++| .++.+ +..+.++++|+.|++
T Consensus       102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  181 (353)
T 2z80_A          102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI  181 (353)
T ss_dssp             CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred             CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence            99999999999888  45899999999999999998776    457899999999998 47777 778999999999999


Q ss_pred             cCCcCcccccC-ccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH----hhhCCCCCCEEeCCCCc
Q psy11652        169 SYNQISKLNAN-TFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ----CFRNLKKLKYLYLHNNN  243 (325)
Q Consensus       169 ~~~~l~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~L~~L~l~~~~  243 (325)
                      ++|.+..+.+. +...++|+.|++++|.++..+...+..++ +|+.|++++|.+..++.    .....+.++.+++.++.
T Consensus       182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~  260 (353)
T 2z80_A          182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS-SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK  260 (353)
T ss_dssp             EETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTT-TEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB
T ss_pred             CCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcc-cccEEECCCCccccccccccccccccchhhcccccccc
Confidence            99999877444 44459999999999999887766666677 99999999999885442    23456778889998887


Q ss_pred             cccc----ccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcccccc
Q psy11652        244 IEFI----QNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILE  296 (325)
Q Consensus       244 l~~~----~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~  296 (325)
                      +.+.    .+..+..+++|+.|++++|+++.+|.  +..+++|+.|++++|++....+.
T Consensus       261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          261 ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             CCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             ccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            7652    23367788999999999999999998  68999999999999999887653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=6.3e-28  Score=235.36  Aligned_cols=286  Identities=24%  Similarity=0.260  Sum_probs=219.2

Q ss_pred             hcccccceEEcCCC-ceeeecCCCcCcccccCccEEECCCCccccc-c-cccCCCCccEEEccCCCCccc--cc--c--c
Q psy11652         24 ISCILLMSAENEDN-QIAELETANWSPEIQNKLTTLFIGENHIHQI-E-NLNGFRSILWLNMDSNLLQTL--DS--L--P   94 (325)
Q Consensus        24 ~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~~~--~~--l--~   94 (325)
                      ..+++|++|++++| .+..++...| ..+ ++|++|+|++|.+..+ | .|.++++|++|++++|.+...  ..  |  +
T Consensus        45 ~~l~~L~~LdLs~n~~~~~i~~~~f-~~L-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L  122 (844)
T 3j0a_A           45 PFLEQLQLLELGSQYTPLTIDKEAF-RNL-PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL  122 (844)
T ss_dssp             SSCCSCSEEEECTTCCCCEECTTTT-SSC-TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred             cccccCeEEeCCCCCCccccCHHHh-cCC-CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence            46777888888777 4446655566 666 7888888888877766 3 777788888888888777653  22  4  7


Q ss_pred             CCccEEEeecCcccch---hhhccCCCCCEEEccCCcceeec-----------------------------CCCCC----
Q psy11652         95 KTMETLSVANNYLVNY---LELNRMTSLKWIVLSNNYIKEFV-----------------------------IPNRK----  138 (325)
Q Consensus        95 ~~L~~L~l~~~~l~~~---~~~~~~~~L~~L~l~~~~~~~~~-----------------------------~~~~~----  138 (325)
                      ++|++|++++|.+...   ..+.++++|++|++++|.++.+.                             +..+.    
T Consensus       123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  202 (844)
T 3j0a_A          123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR  202 (844)
T ss_dssp             SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred             CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccc
Confidence            7788888888777665   45777778888887777654211                             11112    


Q ss_pred             --CccEEEccCCccccc-hhh------------------------------------ccC--CCCccEEEccCCcCcccc
Q psy11652        139 --HIEKLDLSNNLISTI-NLN------------------------------------LNN--TYYIKDLILSYNQISKLN  177 (325)
Q Consensus       139 --~L~~L~l~~~~~~~~-~~~------------------------------------~~~--~~~L~~L~l~~~~l~~~~  177 (325)
                        .|+.|++++|.++.. +..                                    |.+  .++|+.|++++|.+..+.
T Consensus       203 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~  282 (844)
T 3j0a_A          203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN  282 (844)
T ss_dssp             TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC
T ss_pred             cCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC
Confidence              388899988865432 111                                    222  267999999999998776


Q ss_pred             cCccCC-ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCc-hHhhhCCCCCCEEeCCCCcccccccchhccC
Q psy11652        178 ANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHL  255 (325)
Q Consensus       178 ~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~  255 (325)
                      +..+.. ++|+.|++++|.++...+..|..++ +|+.|++++|.+..+ +..+..+++|++|++++|.+..+++..+..+
T Consensus       283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l  361 (844)
T 3j0a_A          283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLD-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL  361 (844)
T ss_dssp             SCCSSSCCCCCEEEEESCCCCEECTTTTTTCS-SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred             hhhhhcCCCCCEEECCCCcCCCCChHHhcCCC-CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence            665554 9999999999999999888999998 999999999999866 5588999999999999999999988889999


Q ss_pred             ccCCEEEccCCCCcccCCCCCCCCCCEEECCCCcCcccccccccchhhhcccccccccceeecc
Q psy11652        256 VNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVMED  319 (325)
Q Consensus       256 ~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (325)
                      ++|+.|++++|.++.++.   +++|+.+++++|+++.++...    .....+++..|.+..++.
T Consensus       362 ~~L~~L~Ls~N~l~~i~~---~~~L~~L~l~~N~l~~l~~~~----~~l~~L~ls~N~l~~l~~  418 (844)
T 3j0a_A          362 EKLQTLDLRDNALTTIHF---IPSIPDIFLSGNKLVTLPKIN----LTANLIHLSENRLENLDI  418 (844)
T ss_dssp             CCCCEEEEETCCSCCCSS---CCSCSEEEEESCCCCCCCCCC----TTCCEEECCSCCCCSSTT
T ss_pred             CCCCEEECCCCCCCcccC---CCCcchhccCCCCcccccccc----cccceeecccCccccCch
Confidence            999999999999997663   788999999999999887652    345567788888876654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.96  E-value=8.6e-28  Score=224.87  Aligned_cols=286  Identities=19%  Similarity=0.223  Sum_probs=210.2

Q ss_pred             cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCccEE
Q psy11652         27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETL  100 (325)
Q Consensus        27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L  100 (325)
                      +.+++|+++++.++.++...| ..+ ++|++|++++|.+..++  .|.++++|++|++++|.+..+  ..|  +++|++|
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~-~~l-~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSF-FSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTT-TTC-SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             ccccEEEccCCccCccChhHh-hCC-CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence            478999999999998887677 777 89999999999988886  788999999999999988877  456  8999999


Q ss_pred             EeecCcccch--hhhccCCCCCEEEccCCccee--ec--CCCCCCccEEEccCCccccc-hhhccCCCCc----cEEEcc
Q psy11652        101 SVANNYLVNY--LELNRMTSLKWIVLSNNYIKE--FV--IPNRKHIEKLDLSNNLISTI-NLNLNNTYYI----KDLILS  169 (325)
Q Consensus       101 ~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~--~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L----~~L~l~  169 (325)
                      ++++|.+..+  ..+.++++|++|++++|.+..  +|  +..+++|++|++++|.++.+ +..++.+.+|    +.+++.
T Consensus       106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~  185 (570)
T 2z63_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (570)
T ss_dssp             ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred             cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence            9999988887  358889999999999998875  45  56788999999999998887 6677777777    788999


Q ss_pred             CCcCcccccCccCCccccEEEcccCC------------------------------------------------------
Q psy11652        170 YNQISKLNANTFRNLNVFRLYLKFNK------------------------------------------------------  195 (325)
Q Consensus       170 ~~~l~~~~~~~~~~~~L~~L~l~~~~------------------------------------------------------  195 (325)
                      +|.+..+++..+...+|+.|++++|.                                                      
T Consensus       186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~  265 (570)
T 2z63_A          186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA  265 (570)
T ss_dssp             TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred             CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence            88888777776666677888777652                                                      


Q ss_pred             ----CcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchh-------------------
Q psy11652        196 ----ISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTF-------------------  252 (325)
Q Consensus       196 ----l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l-------------------  252 (325)
                          +.+..+..+..++ +++.++++++.+..+|..+..+ +|++|++.+|.+..++...+                   
T Consensus       266 ~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~  343 (570)
T 2z63_A          266 YLDYYLDDIIDLFNCLT-NVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE  343 (570)
T ss_dssp             ETTEEESCSTTTTGGGT-TCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC
T ss_pred             cchhhhhhchhhhcCcC-cccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc
Confidence                1122234455566 8888888888777777766666 77777777777665443211                   


Q ss_pred             ccCccCCEEEccCCCCccc---CC-CCCCCCCCEEECCCCcCcccccccccchhhhcccccccccceee
Q psy11652        253 EHLVNLKSISLSGNKLTRI---PD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVM  317 (325)
Q Consensus       253 ~~~~~L~~L~l~~n~l~~l---~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (325)
                      ..+++|+.|++++|.++.+   +. +..+++|+.|++++|.++.+++. .....++..+++..|.+...
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~  411 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM  411 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESC
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccc
Confidence            3445666666666666543   22 55566666666666666666655 33344555666666666543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.95  E-value=9e-27  Score=220.39  Aligned_cols=135  Identities=20%  Similarity=0.273  Sum_probs=111.5

Q ss_pred             ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCc--CchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEE
Q psy11652        184 LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT--NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSI  261 (325)
Q Consensus       184 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L  261 (325)
                      .+++.++++.|.+....+..+..++ .++.|++++|...  ..|..+..+++|++|++++|+++++++..+.++++|+.|
T Consensus       445 ~~l~~l~ls~n~l~~~~~~~~~~~~-~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L  523 (635)
T 4g8a_A          445 RNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  523 (635)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             cccccccccccccccccccccccch-hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence            5666777777777777777777777 8999999988643  345578889999999999999999988889999999999


Q ss_pred             EccCCCCcccCC--CCCCCCCCEEECCCCcCcccccccccch-hhhcccccccccceeecc
Q psy11652        262 SLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVE-NEIIDQNMLFNSNAVMED  319 (325)
Q Consensus       262 ~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  319 (325)
                      ++++|+++.+++  +..+++|++|++++|+|++++++..... ..+..+++..|.+.+-.+
T Consensus       524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            999999998876  8899999999999999999998876543 567778889998866443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.95  E-value=4e-26  Score=207.50  Aligned_cols=254  Identities=22%  Similarity=0.299  Sum_probs=168.0

Q ss_pred             hcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEE
Q psy11652         24 ISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLS  101 (325)
Q Consensus        24 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~  101 (325)
                      ..+++|++|++++|.++.++   + ..+ ++|++|++++|.++.++ +.++++|++|++++|.+..++ +  +++|+.|+
T Consensus        61 ~~l~~L~~L~Ls~n~l~~~~---~-~~l-~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~  133 (457)
T 3bz5_A           61 EKLTGLTKLICTSNNITTLD---L-SQN-TNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLN  133 (457)
T ss_dssp             GGCTTCSEEECCSSCCSCCC---C-TTC-TTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEE
T ss_pred             cccCCCCEEEccCCcCCeEc---c-ccC-CCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEE
Confidence            47889999999999988876   4 556 88999999999888875 778888999999988887764 4  78888888


Q ss_pred             eecCcccchhhhccCCCCCEEEccCC-cceeecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCc
Q psy11652        102 VANNYLVNYLELNRMTSLKWIVLSNN-YIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANT  180 (325)
Q Consensus       102 l~~~~l~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  180 (325)
                      +++|.++.+ .+..+++|++|++++| .+..+++..+++|++|++++|.++.++  +..+++|+.|++.+|.++.++  +
T Consensus       134 l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~--l  208 (457)
T 3bz5_A          134 CARNTLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--L  208 (457)
T ss_dssp             CTTSCCSCC-CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCC--C
T ss_pred             CCCCcccee-ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCeec--c
Confidence            888877765 3566677777777766 333445556666666666666666654  555666666666666655542  3


Q ss_pred             cCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-h-----------------------------hhC
Q psy11652        181 FRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-C-----------------------------FRN  230 (325)
Q Consensus       181 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~-----------------------------~~~  230 (325)
                      ...++|+.|++++|.+++++   +..++ +|+.|++++|.+..+|. .                             +..
T Consensus       209 ~~l~~L~~L~Ls~N~l~~ip---~~~l~-~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~  284 (457)
T 3bz5_A          209 NQNIQLTFLDCSSNKLTEID---VTPLT-QLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEG  284 (457)
T ss_dssp             TTCTTCSEEECCSSCCSCCC---CTTCT-TCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT
T ss_pred             ccCCCCCEEECcCCcccccC---ccccC-CCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccc
Confidence            33456666666666665543   44555 56666666665554331 1                             223


Q ss_pred             CCCCCEEeCCCCccccccc--------chhccCccCCEEEccCCCCcccCCCCCCCCCCEEECCCCcCcccc
Q psy11652        231 LKKLKYLYLHNNNIEFIQN--------NTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELI  294 (325)
Q Consensus       231 ~~~L~~L~l~~~~l~~~~~--------~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~i~~~~  294 (325)
                      +++|+.|++++|...+..+        ..+.++++|+.|++++|+++.++ +..+++|+.|++++|++++++
T Consensus       285 l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~-l~~l~~L~~L~l~~N~l~~l~  355 (457)
T 3bz5_A          285 CRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD-VSHNTKLKSLSCVNAHIQDFS  355 (457)
T ss_dssp             CTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC-CTTCTTCSEEECCSSCCCBCT
T ss_pred             cccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc-cccCCcCcEEECCCCCCCCcc
Confidence            4555555555554322111        12445567777777777777764 777778888888888877754

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=8.8e-27  Score=211.33  Aligned_cols=239  Identities=22%  Similarity=0.291  Sum_probs=201.7

Q ss_pred             hccc-ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCC
Q psy11652         24 ISCI-LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKT   96 (325)
Q Consensus        24 ~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~   96 (325)
                      +.|. ....+++++..++.+|. .+    .++++.|+|++|.+..++  .|.++++|++|++++|.+..+  ..|  +++
T Consensus        39 C~C~~~~~~v~c~~~~l~~iP~-~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~  113 (440)
T 3zyj_A           39 CSCSNQFSKVICVRKNLREVPD-GI----STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN  113 (440)
T ss_dssp             SEECTTSCEEECCSCCCSSCCS-CC----CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSS
T ss_pred             CEeCCCCCEEEeCCCCcCcCCC-CC----CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCcc
Confidence            4454 46789999999999998 45    378999999999999887  899999999999999999887  456  899


Q ss_pred             ccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCC-ccccc-hhhccCCCCccEEEcc
Q psy11652         97 METLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNN-LISTI-NLNLNNTYYIKDLILS  169 (325)
Q Consensus        97 L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~L~~L~l~  169 (325)
                      |+.|++++|.++.+  ..+..+++|++|++++|.++.++   +..+++|++|+++++ .+..+ +..|.++++|+.|+++
T Consensus       114 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~  193 (440)
T 3zyj_A          114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA  193 (440)
T ss_dssp             CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred             CCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence            99999999998888  56889999999999999998777   567889999999884 45556 5678889999999999


Q ss_pred             CCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccc
Q psy11652        170 YNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQ  248 (325)
Q Consensus       170 ~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~  248 (325)
                      +|.++.++. +...++|+.|++++|.++...+..|..++ +|+.|++++|.+..++. .+..+++|+.|++++|.++.++
T Consensus       194 ~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  271 (440)
T 3zyj_A          194 MCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLM-HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP  271 (440)
T ss_dssp             TSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred             CCcCccccc-cCCCcccCEEECCCCccCccChhhhccCc-cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence            998887764 45558899999999998888888888888 89999999888886544 6778888889999888888888


Q ss_pred             cchhccCccCCEEEccCCCCc
Q psy11652        249 NNTFEHLVNLKSISLSGNKLT  269 (325)
Q Consensus       249 ~~~l~~~~~L~~L~l~~n~l~  269 (325)
                      +..+..+++|+.|++++|.+.
T Consensus       272 ~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          272 HDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TTTTSSCTTCCEEECCSSCEE
T ss_pred             hhHhccccCCCEEEcCCCCcc
Confidence            877888888888888888664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=6.4e-27  Score=202.15  Aligned_cols=236  Identities=19%  Similarity=0.227  Sum_probs=151.4

Q ss_pred             cceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc----ccc--cCCccEE
Q psy11652         29 LMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL----DSL--PKTMETL  100 (325)
Q Consensus        29 L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~----~~l--~~~L~~L  100 (325)
                      .+.++++++.++.+|. .+    +++|++|++++|.++.+|  .|.++++|++|++++|.+...    ..+  +++|++|
T Consensus         9 ~~~l~c~~~~l~~ip~-~~----~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L   83 (306)
T 2z66_A            9 GTEIRCNSKGLTSVPT-GI----PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL   83 (306)
T ss_dssp             TTEEECCSSCCSSCCS-CC----CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEE
T ss_pred             CCEEEcCCCCcccCCC-CC----CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEE
Confidence            4678999999999998 44    378999999999999888  578999999999999887654    112  5666666


Q ss_pred             EeecCcccch-hhhccCCCCCEEEccCCcceeec----CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCc
Q psy11652        101 SVANNYLVNY-LELNRMTSLKWIVLSNNYIKEFV----IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQIS  174 (325)
Q Consensus       101 ~l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~  174 (325)
                      ++++|.+..+ ..+..+++|++|++++|.++.++    +..+++|++|++++|.+... +..+..+++            
T Consensus        84 ~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~------------  151 (306)
T 2z66_A           84 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS------------  151 (306)
T ss_dssp             ECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTT------------
T ss_pred             ECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcC------------
Confidence            6666665555 44555566666666665555433    23444555555555544443 334444444            


Q ss_pred             ccccCccCCccccEEEcccCCCcc-cChhhhhCccccCCEEEccCCCCcCc-hHhhhCCCCCCEEeCCCCcccccccchh
Q psy11652        175 KLNANTFRNLNVFRLYLKFNKISE-IHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTF  252 (325)
Q Consensus       175 ~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~l  252 (325)
                                 |+.|++++|.+++ ..+..+..++ +|+.|++++|.+..+ +..+..+++|++|++++|.++++++..+
T Consensus       152 -----------L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  219 (306)
T 2z66_A          152 -----------LEVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY  219 (306)
T ss_dssp             -----------CCEEECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred             -----------CCEEECCCCccccccchhHHhhCc-CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence                       4455555444443 2233444555 666666666666544 3355666666777777776666666566


Q ss_pred             ccCccCCEEEccCCCCcccCC--CCCC-CCCCEEECCCCcCccc
Q psy11652        253 EHLVNLKSISLSGNKLTRIPD--FIHN-KRLSHLNLGYNFLNEL  293 (325)
Q Consensus       253 ~~~~~L~~L~l~~n~l~~l~~--~~~~-~~L~~L~l~~n~i~~~  293 (325)
                      ..+++|+.|++++|.++..++  +..+ ++|+.|++++|+++..
T Consensus       220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            667777777777777775433  5555 3777777777777654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=1.8e-27  Score=206.12  Aligned_cols=245  Identities=17%  Similarity=0.143  Sum_probs=150.1

Q ss_pred             hhhhccc------ccceEEcCCCcee---eecCCCcCcccccCccEEECCC-Cccc-ccc-cccCCCCccEEEccCCCCc
Q psy11652         21 NVQISCI------LLMSAENEDNQIA---ELETANWSPEIQNKLTTLFIGE-NHIH-QIE-NLNGFRSILWLNMDSNLLQ   88 (325)
Q Consensus        21 ~~~~~~~------~L~~L~l~~~~i~---~~~~~~~~~~~~~~L~~L~l~~-~~~~-~~~-~~~~~~~L~~L~l~~~~~~   88 (325)
                      |.++.|.      ++++|+++++.++   .+|. .+ ..+ ++|++|++++ +.+. .+| .+.++++|++|++++|.+.
T Consensus        38 w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~-~l-~~l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  114 (313)
T 1ogq_A           38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-SL-ANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS  114 (313)
T ss_dssp             STTEEECCSSSCCCEEEEEEECCCCSSCEECCG-GG-GGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE
T ss_pred             CcceEeCCCCCCceEEEEECCCCCccCCcccCh-hH-hCC-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC
Confidence            7777773      4666666666555   2443 44 444 5666666653 4444 233 4555555555555555444


Q ss_pred             ccccccCCccEEEeecCcccch-hhhccCCCCCEEEccCCcce-eec--CCCCCCccEEEccCCccccc-hhhccCCC-C
Q psy11652         89 TLDSLPKTMETLSVANNYLVNY-LELNRMTSLKWIVLSNNYIK-EFV--IPNRKHIEKLDLSNNLISTI-NLNLNNTY-Y  162 (325)
Q Consensus        89 ~~~~l~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~-~~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~~-~  162 (325)
                      ..                   . ..+.++++|++|++++|.++ .+|  +..+++|++|++++|.+++. |..+..++ +
T Consensus       115 ~~-------------------~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~  175 (313)
T 1ogq_A          115 GA-------------------IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL  175 (313)
T ss_dssp             EE-------------------CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT
T ss_pred             Cc-------------------CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhc
Confidence            22                   1 34445555555555555555 333  34455555566665555533 55555555 6


Q ss_pred             ccEEEccCCcCcc-cccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCC
Q psy11652        163 IKDLILSYNQISK-LNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHN  241 (325)
Q Consensus       163 L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~  241 (325)
                      |+.|++++|.+.. ++..+...+ |+.|++++|.+++..+..+..++ +|+.|++++|.+...+..+..+++|++|++++
T Consensus       176 L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~  253 (313)
T 1ogq_A          176 FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK-NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN  253 (313)
T ss_dssp             CCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS-CCSEEECCSSEECCBGGGCCCCTTCCEEECCS
T ss_pred             CcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC-CCCEEECCCCceeeecCcccccCCCCEEECcC
Confidence            6666666666653 332222223 77777777777666666677776 77777777777775544566777888888888


Q ss_pred             CcccccccchhccCccCCEEEccCCCCc-ccCCCCCCCCCCEEECCCCc
Q psy11652        242 NNIEFIQNNTFEHLVNLKSISLSGNKLT-RIPDFIHNKRLSHLNLGYNF  289 (325)
Q Consensus       242 ~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~l~~~~~~~~L~~L~l~~n~  289 (325)
                      |.+++..+..+..+++|+.|++++|.++ .+|....+++|+.+++.+|+
T Consensus       254 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             SCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             CcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence            8877666667777788888888888887 55656677788888888876

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.9e-26  Score=209.81  Aligned_cols=239  Identities=21%  Similarity=0.285  Sum_probs=195.0

Q ss_pred             hccc-ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCC
Q psy11652         24 ISCI-LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKT   96 (325)
Q Consensus        24 ~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~   96 (325)
                      +.|. ....+++++..++.+|. .+    .+++++|+|++|.+..++  .|.++++|++|++++|.+..+  ..|  +++
T Consensus        50 C~C~~~~~~v~c~~~~l~~iP~-~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  124 (452)
T 3zyi_A           50 CSCSNQFSKVVCTRRGLSEVPQ-GI----PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS  124 (452)
T ss_dssp             SEECSSSCEEECCSSCCSSCCS-CC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CEECCCCcEEEECCCCcCccCC-CC----CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCccc
Confidence            4454 46789999999999998 45    378999999999999886  899999999999999998887  456  899


Q ss_pred             ccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccC-Cccccc-hhhccCCCCccEEEcc
Q psy11652         97 METLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSN-NLISTI-NLNLNNTYYIKDLILS  169 (325)
Q Consensus        97 L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~-~~~~~~-~~~~~~~~~L~~L~l~  169 (325)
                      |+.|++++|.+..+  ..+..+++|++|++++|.++.++   +..+++|++|++++ +.+..+ +..|.++++|+.|+++
T Consensus       125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~  204 (452)
T 3zyi_A          125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG  204 (452)
T ss_dssp             CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred             CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence            99999999988887  55888999999999999988777   56788999999987 455556 5568888899999999


Q ss_pred             CCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCch-HhhhCCCCCCEEeCCCCcccccc
Q psy11652        170 YNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFIQ  248 (325)
Q Consensus       170 ~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~l~~~~  248 (325)
                      +|.++.++. +...++|+.|++++|.+++..+..|..++ +|+.|++++|.+..++ ..+..+++|+.|++++|.++.++
T Consensus       205 ~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  282 (452)
T 3zyi_A          205 MCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLS-SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP  282 (452)
T ss_dssp             TSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCccccccc-ccccccccEEECcCCcCcccCcccccCcc-CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence            888887753 44558888888888888888778888887 8888888888887553 46777888888888888888877


Q ss_pred             cchhccCccCCEEEccCCCCc
Q psy11652        249 NNTFEHLVNLKSISLSGNKLT  269 (325)
Q Consensus       249 ~~~l~~~~~L~~L~l~~n~l~  269 (325)
                      +..+..+++|+.|++++|.+.
T Consensus       283 ~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          283 HDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TTSSTTCTTCCEEECCSSCEE
T ss_pred             hHHhccccCCCEEEccCCCcC
Confidence            777777888888888887654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=2e-27  Score=205.85  Aligned_cols=235  Identities=20%  Similarity=0.230  Sum_probs=192.3

Q ss_pred             CCccEEEccCCCCcc---c-ccc--cCCccEEEeec-Ccccch--hhhccCCCCCEEEccCCcce-eec--CCCCCCccE
Q psy11652         75 RSILWLNMDSNLLQT---L-DSL--PKTMETLSVAN-NYLVNY--LELNRMTSLKWIVLSNNYIK-EFV--IPNRKHIEK  142 (325)
Q Consensus        75 ~~L~~L~l~~~~~~~---~-~~l--~~~L~~L~l~~-~~l~~~--~~~~~~~~L~~L~l~~~~~~-~~~--~~~~~~L~~  142 (325)
                      .+++.|+++++.+..   + ..|  +++|++|++++ |.+...  ..+.++++|++|++++|.++ .+|  +..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            345566666665553   2 344  67777777773 666544  67888999999999999998 666  678999999


Q ss_pred             EEccCCccccc-hhhccCCCCccEEEccCCcCc-ccccCccCCc-cccEEEcccCCCcccChhhhhCccccCCEEEccCC
Q psy11652        143 LDLSNNLISTI-NLNLNNTYYIKDLILSYNQIS-KLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENN  219 (325)
Q Consensus       143 L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~  219 (325)
                      |++++|.++.. |..+..+++|+.|++.+|.++ .++..+...+ +|+.|++++|.+++..+..+..+  .|+.|++++|
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l--~L~~L~Ls~N  207 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRN  207 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC--CCSEEECCSS
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC--cccEEECcCC
Confidence            99999999965 889999999999999999998 6777777775 99999999999997777778776  4999999999


Q ss_pred             CCc-CchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCc-ccCC-CCCCCCCCEEECCCCcCcccccc
Q psy11652        220 RLT-NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT-RIPD-FIHNKRLSHLNLGYNFLNELILE  296 (325)
Q Consensus       220 ~l~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~l~~-~~~~~~L~~L~l~~n~i~~~~~~  296 (325)
                      .+. ..|..+..+++|+.|++++|.+++..+. +..+++|+.|++++|.++ .+|. +..+++|+.|++++|++++..+.
T Consensus       208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence            988 5667889999999999999999876664 777899999999999999 6776 99999999999999999965555


Q ss_pred             cccchhhhccccccccc
Q psy11652        297 SSIVENEIIDQNMLFNS  313 (325)
Q Consensus       297 ~~~~~~~~~~~~~~~~~  313 (325)
                      . ....++..+++..|+
T Consensus       287 ~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          287 G-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             S-TTGGGSCGGGTCSSS
T ss_pred             C-ccccccChHHhcCCC
Confidence            4 344556667777777

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.95  E-value=4.6e-26  Score=206.89  Aligned_cols=244  Identities=23%  Similarity=0.334  Sum_probs=161.2

Q ss_pred             cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccccCCccEEEeecCc
Q psy11652         27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNY  106 (325)
Q Consensus        27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~L~~L~l~~~~  106 (325)
                      ++|++|++++|.++.++.      ..++|++|++++|.++.+|.+.++++|++|++++|.+..++..+.+|+.|++++|.
T Consensus       111 ~~L~~L~l~~n~l~~l~~------~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~  184 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKALSD------LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ  184 (454)
T ss_dssp             TTCCEEECCSSCCSCCCS------CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred             CCCcEEECCCCccCcccC------CCCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCc
Confidence            344555555554444333      22578888888888888878888888999999888887765556788899998888


Q ss_pred             ccchhhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccc
Q psy11652        107 LVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNV  186 (325)
Q Consensus       107 l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L  186 (325)
                      +..++.+.++++|++|++++|.++.+|. ...+|++|++++|.++.+| .+..+++|+.|++++|.++.++..   .++|
T Consensus       185 l~~l~~~~~l~~L~~L~l~~N~l~~l~~-~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L  259 (454)
T 1jl5_A          185 LEELPELQNLPFLTAIYADNNSLKKLPD-LPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSL  259 (454)
T ss_dssp             CSSCCCCTTCTTCCEEECCSSCCSSCCC-CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTC
T ss_pred             CCcCccccCCCCCCEEECCCCcCCcCCC-CcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCccccc---cccc
Confidence            8777678888899999999888887762 1358888999888888766 378888899999988888776542   2678


Q ss_pred             cEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCC
Q psy11652        187 FRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN  266 (325)
Q Consensus       187 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n  266 (325)
                      +.|++++|.+++++.    ..+ +|+.|++++|.+..++..   .++|+.|++++|.+++++.  +  .++|+.|++++|
T Consensus       260 ~~L~l~~N~l~~l~~----~~~-~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~i~~--~--~~~L~~L~Ls~N  327 (454)
T 1jl5_A          260 EALNVRDNYLTDLPE----LPQ-SLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSLCD--L--PPSLEELNVSNN  327 (454)
T ss_dssp             CEEECCSSCCSCCCC----CCT-TCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSEECC--C--CTTCCEEECCSS
T ss_pred             CEEECCCCcccccCc----ccC-cCCEEECcCCccCcccCc---CCcCCEEECcCCcCCcccC--C--cCcCCEEECCCC
Confidence            888888888776542    123 677777777766654321   1345555555554444321  0  124455555555


Q ss_pred             CCcccCCCCCCCCCCEEECCCCcCccccc
Q psy11652        267 KLTRIPDFIHNKRLSHLNLGYNFLNELIL  295 (325)
Q Consensus       267 ~l~~l~~~~~~~~L~~L~l~~n~i~~~~~  295 (325)
                      +++.+|..  +++|+.|++++|.++.+|.
T Consensus       328 ~l~~lp~~--~~~L~~L~L~~N~l~~lp~  354 (454)
T 1jl5_A          328 KLIELPAL--PPRLERLIASFNHLAEVPE  354 (454)
T ss_dssp             CCSCCCCC--CTTCCEEECCSSCCSCCCC
T ss_pred             cccccccc--CCcCCEEECCCCccccccc
Confidence            54444431  2444445554444444443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.94  E-value=8.4e-26  Score=213.74  Aligned_cols=289  Identities=21%  Similarity=0.243  Sum_probs=205.3

Q ss_pred             ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCccEEE
Q psy11652         28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLS  101 (325)
Q Consensus        28 ~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~  101 (325)
                      .+++||+++|.|+.++...| ..+ ++|++|+|++|.++.++  +|.++++|++|++++|++..+  ..|  +++|++|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f-~~l-~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSF-FSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTT-TTC-TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             CCCEEEeeCCCCCCCCHHHH-hCC-CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            67888888888888887777 777 88888888888888876  688888888888888888777  445  78888888


Q ss_pred             eecCcccch--hhhccCCCCCEEEccCCcceee--c--CCCCCCccEEEccCCccccc-hhhccC---------------
Q psy11652        102 VANNYLVNY--LELNRMTSLKWIVLSNNYIKEF--V--IPNRKHIEKLDLSNNLISTI-NLNLNN---------------  159 (325)
Q Consensus       102 l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~--~--~~~~~~L~~L~l~~~~~~~~-~~~~~~---------------  159 (325)
                      +++|.++.+  ..++++++|++|++++|.++.+  |  +..+++|++|++++|.++.+ +..+..               
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~  210 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  210 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence            888888777  4578888888888888887643  3  44677788888877765443 221110               


Q ss_pred             --------------------------------------------------------------------------------
Q psy11652        160 --------------------------------------------------------------------------------  159 (325)
Q Consensus       160 --------------------------------------------------------------------------------  159 (325)
                                                                                                      
T Consensus       211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~  290 (635)
T 4g8a_A          211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  290 (635)
T ss_dssp             CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred             CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence                                                                                            


Q ss_pred             ------------------------------------CCCccEEEccCCcCccccc--------------------CccCC
Q psy11652        160 ------------------------------------TYYIKDLILSYNQISKLNA--------------------NTFRN  183 (325)
Q Consensus       160 ------------------------------------~~~L~~L~l~~~~l~~~~~--------------------~~~~~  183 (325)
                                                          ...++.|++.++.+..++.                    .....
T Consensus       291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l  370 (635)
T 4g8a_A          291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL  370 (635)
T ss_dssp             CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred             hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc
Confidence                                                0112222222222111100                    00112


Q ss_pred             ccccEEEcccCCCc--------------------------c------------------------cChhhhhCccccCCE
Q psy11652        184 LNVFRLYLKFNKIS--------------------------E------------------------IHDFAFNGLNSTLEF  213 (325)
Q Consensus       184 ~~L~~L~l~~~~l~--------------------------~------------------------~~~~~~~~~~~~L~~  213 (325)
                      ++++.+++++|.+.                          .                        .+...+..++ +++.
T Consensus       371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~-~l~~  449 (635)
T 4g8a_A          371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIY  449 (635)
T ss_dssp             TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT-TCCE
T ss_pred             cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc-cccc
Confidence            34555555544331                          0                        1122344555 7777


Q ss_pred             EEccCCCCcCc-hHhhhCCCCCCEEeCCCCccc-ccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCc
Q psy11652        214 LDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIE-FIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNF  289 (325)
Q Consensus       214 L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~-~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~  289 (325)
                      ++++.|.+... +..+..++.++.|++++|.+. .+.+..+..+++|+.|++++|+++.+++  +..+++|++|++++|+
T Consensus       450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~  529 (635)
T 4g8a_A          450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN  529 (635)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             ccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc
Confidence            77777777633 446778899999999999744 4666788899999999999999998765  9999999999999999


Q ss_pred             Ccccccccccchhhhcccccccccceeecc
Q psy11652        290 LNELILESSIVENEIIDQNMLFNSNAVMED  319 (325)
Q Consensus       290 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (325)
                      |+++++.......++..+++..|++..++.
T Consensus       530 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  559 (635)
T 4g8a_A          530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  559 (635)
T ss_dssp             CCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred             CCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence            999999887777788889999999976643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=1.3e-25  Score=210.32  Aligned_cols=239  Identities=21%  Similarity=0.192  Sum_probs=158.0

Q ss_pred             ccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccccCCccEEEeecC
Q psy11652         26 CILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANN  105 (325)
Q Consensus        26 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~L~~L~l~~~  105 (325)
                      ..++++|+++++.++.+|. .+    .++|++|++++|.++.+|.  .+++|++|++++|.+..++..+++|+.|++++|
T Consensus        39 ~~~l~~L~ls~n~L~~lp~-~l----~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N  111 (622)
T 3g06_A           39 NNGNAVLNVGESGLTTLPD-CL----PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSN  111 (622)
T ss_dssp             HHCCCEEECCSSCCSCCCS-CC----CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSC
T ss_pred             CCCCcEEEecCCCcCccCh-hh----CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCC
Confidence            3479999999999999998 45    2799999999999998875  578999999999998877446899999999999


Q ss_pred             cccchhhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCcc
Q psy11652        106 YLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLN  185 (325)
Q Consensus       106 ~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~  185 (325)
                      .+..+..  .+++|+.|++++|.++.+|. .+++|++|++++|.++.++..   +.+|+.|++.+|.++.++   ...++
T Consensus       112 ~l~~l~~--~l~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~---~~~~~  182 (622)
T 3g06_A          112 PLTHLPA--LPSGLCKLWIFGNQLTSLPV-LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLP---MLPSG  182 (622)
T ss_dssp             CCCCCCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCC---CCCTT
T ss_pred             cCCCCCC--CCCCcCEEECCCCCCCcCCC-CCCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCCCc---ccCCC
Confidence            8887744  67889999999998888773 248888888888888776432   345666666666666555   12356


Q ss_pred             ccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccC
Q psy11652        186 VFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSG  265 (325)
Q Consensus       186 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~  265 (325)
                      |+.|++++|.++.++.    ..+ +|+.|++++|.+..+|.   .+++|+.|++++|.+++++    ..+++|+.|++++
T Consensus       183 L~~L~Ls~N~l~~l~~----~~~-~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~  250 (622)
T 3g06_A          183 LQELSVSDNQLASLPT----LPS-ELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTSLP----VLPSELKELMVSG  250 (622)
T ss_dssp             CCEEECCSSCCSCCCC----CCT-TCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCS
T ss_pred             CcEEECCCCCCCCCCC----ccc-hhhEEECcCCcccccCC---CCCCCCEEEccCCccCcCC----CCCCcCcEEECCC
Confidence            6666666666655432    112 45555555555444432   1244555555555444433    2234444555555


Q ss_pred             CCCcccCCCCCCCCCCEEECCCCcCcccc
Q psy11652        266 NKLTRIPDFIHNKRLSHLNLGYNFLNELI  294 (325)
Q Consensus       266 n~l~~l~~~~~~~~L~~L~l~~n~i~~~~  294 (325)
                      |.++.+|.  .+++|+.|++++|.|+.+|
T Consensus       251 N~L~~lp~--~~~~L~~L~Ls~N~L~~lp  277 (622)
T 3g06_A          251 NRLTSLPM--LPSGLLSLSVYRNQLTRLP  277 (622)
T ss_dssp             SCCSCCCC--CCTTCCEEECCSSCCCSCC
T ss_pred             CCCCcCCc--ccccCcEEeCCCCCCCcCC
Confidence            54444443  3344445555555444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=3.5e-26  Score=197.53  Aligned_cols=240  Identities=19%  Similarity=0.233  Sum_probs=191.4

Q ss_pred             cEEEccCCCCccc-ccccCCccEEEeecCcccch--hhhccCCCCCEEEccCCcceee---c--CCCCCCccEEEccCCc
Q psy11652         78 LWLNMDSNLLQTL-DSLPKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEF---V--IPNRKHIEKLDLSNNL  149 (325)
Q Consensus        78 ~~L~l~~~~~~~~-~~l~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~---~--~~~~~~L~~L~l~~~~  149 (325)
                      +.++++++.++.+ ..++++|+.|++++|.+..+  ..+.++++|++|++++|.++.+   +  ...+++|++|++++|.
T Consensus        10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~   89 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG   89 (306)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred             CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence            3555666555555 34466677777777766666  3466777777777777776633   2  4457788888888888


Q ss_pred             cccchhhccCCCCccEEEccCCcCccccc--CccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcC--ch
Q psy11652        150 ISTINLNLNNTYYIKDLILSYNQISKLNA--NTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN--IN  225 (325)
Q Consensus       150 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~  225 (325)
                      ++.++..+..+++|+.|++++|.++.++.  .+...++|++|++++|.++...+..+..++ +|++|++++|.+..  +|
T Consensus        90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~  168 (306)
T 2z66_A           90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLP  168 (306)
T ss_dssp             EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT-TCCEEECTTCEEGGGEEC
T ss_pred             cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc-CCCEEECCCCccccccch
Confidence            87776668888888888888888877664  344458999999999998888888888898 99999999999874  67


Q ss_pred             HhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcccccccccch-h
Q psy11652        226 QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVE-N  302 (325)
Q Consensus       226 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~~-~  302 (325)
                      ..+..+++|++|++++|.++++++..+..+++|+.|++++|.++.++.  +..+++|+.|++++|++++.++...... .
T Consensus       169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  248 (306)
T 2z66_A          169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS  248 (306)
T ss_dssp             SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCT
T ss_pred             hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhc
Confidence            788999999999999999999888889999999999999999998876  8889999999999999999888765443 4


Q ss_pred             hhcccccccccceeec
Q psy11652        303 EIIDQNMLFNSNAVME  318 (325)
Q Consensus       303 ~~~~~~~~~~~~~~~~  318 (325)
                      .+..+++..|.+.+.+
T Consensus       249 ~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          249 SLAFLNLTQNDFACTC  264 (306)
T ss_dssp             TCCEEECTTCCEECSG
T ss_pred             cCCEEEccCCCeeccc
Confidence            7788899999986543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.94  E-value=1.2e-26  Score=210.68  Aligned_cols=266  Identities=20%  Similarity=0.219  Sum_probs=153.9

Q ss_pred             cccccceEEcCCCcee-eecCCCcCccccc-------------CccEEECCCCcccccccccCCCCccEEEccCCCCccc
Q psy11652         25 SCILLMSAENEDNQIA-ELETANWSPEIQN-------------KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTL   90 (325)
Q Consensus        25 ~~~~L~~L~l~~~~i~-~~~~~~~~~~~~~-------------~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~   90 (325)
                      .+++|++|+++++.+. .+|. .+ +++ .             .+++|++++|.++++|.+  .++|++|++++|.+..+
T Consensus        32 ~L~~L~~L~l~~n~~~~~~p~-~~-~~l-~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~l  106 (454)
T 1jl5_A           32 NVKSKTEYYNAWSEWERNAPP-GN-GEQ-REMAVSRLRDCLDRQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTEL  106 (454)
T ss_dssp             --CCHHHHHHHHHHHHHTSCT-TS-CCC-HHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSC
T ss_pred             cccchhhhhccCCcccccCCc-cc-ccc-hhcchhhhhhhhccCCCEEEecCCccccCCCC--cCCCCEEEccCCcCCcc
Confidence            5555555555555554 3333 33 332 2             235566666655555532  24566666666655555


Q ss_pred             ccccCCccEEEeecCcccchhhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEcc
Q psy11652         91 DSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILS  169 (325)
Q Consensus        91 ~~l~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  169 (325)
                      +..+++|+.|++++|.+..+..+  .++|++|++++|.++.+| +..+++|++|++++|.++.+|..+   .+|+.|+++
T Consensus       107 p~~~~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~  181 (454)
T 1jl5_A          107 PELPQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAG  181 (454)
T ss_dssp             CCCCTTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECC
T ss_pred             ccccCCCcEEECCCCccCcccCC--CCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECc
Confidence            33345666666666655544211  146666666666666666 556666677777666666554322   366667776


Q ss_pred             CCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCccccccc
Q psy11652        170 YNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQN  249 (325)
Q Consensus       170 ~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~  249 (325)
                      +|.++.++ .+...++|+.|++++|.+++++.    ..+ +|+.|++++|.+..+|. +..+++|++|++++|.+++++.
T Consensus       182 ~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~----~~~-~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~  254 (454)
T 1jl5_A          182 NNQLEELP-ELQNLPFLTAIYADNNSLKKLPD----LPL-SLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPD  254 (454)
T ss_dssp             SSCCSSCC-CCTTCTTCCEEECCSSCCSSCCC----CCT-TCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCS
T ss_pred             CCcCCcCc-cccCCCCCCEEECCCCcCCcCCC----CcC-cccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcccc
Confidence            66666654 34444677777777776665432    112 67777777777766663 6677777777777777766543


Q ss_pred             chhccCccCCEEEccCCCCcccCCCCCCCCCCEEECCCCcCcccccccccchhhhcccccccccceee
Q psy11652        250 NTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVM  317 (325)
Q Consensus       250 ~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (325)
                          ..++|+.|++++|.++.+|..  .++|+.|++++|.+++++...    ..+..+++..|.+..+
T Consensus       255 ----~~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~l~~~~----~~L~~L~l~~N~l~~i  312 (454)
T 1jl5_A          255 ----LPPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSGLSELP----PNLYYLNASSNEIRSL  312 (454)
T ss_dssp             ----CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSEESCCC----TTCCEEECCSSCCSEE
T ss_pred             ----cccccCEEECCCCcccccCcc--cCcCCEEECcCCccCcccCcC----CcCCEEECcCCcCCcc
Confidence                135677777777777766652  256777777777777654321    2334444455554443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=1.2e-25  Score=204.54  Aligned_cols=236  Identities=23%  Similarity=0.366  Sum_probs=205.9

Q ss_pred             cCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc--ccc--cCCccEEEeecCcccch--hhhccCCCCCEEEcc
Q psy11652         53 NKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLSVANNYLVNY--LELNRMTSLKWIVLS  125 (325)
Q Consensus        53 ~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~  125 (325)
                      .....++.++..+..+| .+.  +++++|++++|.+..+  ..|  +++|+.|++++|.+..+  ..+.++++|++|+++
T Consensus        54 ~~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           54 NQFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            35678899888899888 443  6899999999999888  566  89999999999998888  688899999999999


Q ss_pred             CCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccC-CcCcccccCccCC-ccccEEEcccCCCccc
Q psy11652        126 NNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSY-NQISKLNANTFRN-LNVFRLYLKFNKISEI  199 (325)
Q Consensus       126 ~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~-~~L~~L~l~~~~l~~~  199 (325)
                      +|.++.++   +..+++|++|++++|.++.+ +..|.++++|+.|++.+ +.+..++...+.. ++|+.|++++|.++.+
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            99999877   55789999999999999988 66899999999999998 4666777655554 9999999999999887


Q ss_pred             ChhhhhCccccCCEEEccCCCCcCc-hHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCC
Q psy11652        200 HDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIH  276 (325)
Q Consensus       200 ~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~  276 (325)
                      +  .+..++ +|+.|++++|.+..+ +..+..+++|+.|++++|.++.+.+..+.++++|+.|++++|+++.+|.  +..
T Consensus       212 ~--~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  288 (452)
T 3zyi_A          212 P--NLTPLV-GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP  288 (452)
T ss_dssp             C--CCTTCT-TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred             c--cccccc-cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence            5  477787 999999999999866 5588999999999999999999888889999999999999999998887  888


Q ss_pred             CCCCCEEECCCCcCccc
Q psy11652        277 NKRLSHLNLGYNFLNEL  293 (325)
Q Consensus       277 ~~~L~~L~l~~n~i~~~  293 (325)
                      +++|+.|++++|++..-
T Consensus       289 l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          289 LRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             CTTCCEEECCSSCEECS
T ss_pred             ccCCCEEEccCCCcCCC
Confidence            99999999999998653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1.1e-25  Score=204.08  Aligned_cols=235  Identities=25%  Similarity=0.373  Sum_probs=207.5

Q ss_pred             cCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc--ccc--cCCccEEEeecCcccch--hhhccCCCCCEEEcc
Q psy11652         53 NKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLSVANNYLVNY--LELNRMTSLKWIVLS  125 (325)
Q Consensus        53 ~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~  125 (325)
                      ...+.++..+..++.+| .+.  ++++.|++++|.+..+  ..|  +++|+.|++++|.+..+  ..+.++++|++|+++
T Consensus        43 ~~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           43 NQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TTSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            46778999999999998 443  6899999999999888  566  89999999999998888  688999999999999


Q ss_pred             CCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCC-cCcccccCccCC-ccccEEEcccCCCccc
Q psy11652        126 NNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYN-QISKLNANTFRN-LNVFRLYLKFNKISEI  199 (325)
Q Consensus       126 ~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~-~~L~~L~l~~~~l~~~  199 (325)
                      +|.++.++   +..+++|++|++++|.++.+ +..|.++++|+.|++.+| .+..++...+.. ++|+.|++++|.++.+
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  200 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI  200 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence            99999877   56889999999999999988 668999999999999984 566677655554 9999999999999987


Q ss_pred             ChhhhhCccccCCEEEccCCCCcCc-hHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCC
Q psy11652        200 HDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIH  276 (325)
Q Consensus       200 ~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~  276 (325)
                      +  .+..++ +|+.|++++|.+..+ +..+..+++|+.|++++|.++.+.+..+..+++|+.|++++|+++.++.  +..
T Consensus       201 ~--~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  277 (440)
T 3zyj_A          201 P--NLTPLI-KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP  277 (440)
T ss_dssp             C--CCTTCS-SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred             c--ccCCCc-ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence            5  477887 999999999999866 4588999999999999999999988889999999999999999998887  888


Q ss_pred             CCCCCEEECCCCcCcc
Q psy11652        277 NKRLSHLNLGYNFLNE  292 (325)
Q Consensus       277 ~~~L~~L~l~~n~i~~  292 (325)
                      +++|+.|++++|++..
T Consensus       278 l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          278 LHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CTTCCEEECCSSCEEC
T ss_pred             ccCCCEEEcCCCCccC
Confidence            9999999999999864

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.7e-26  Score=196.24  Aligned_cols=211  Identities=21%  Similarity=0.318  Sum_probs=152.2

Q ss_pred             cceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCccEEEe
Q psy11652         29 LMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLSV  102 (325)
Q Consensus        29 L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l  102 (325)
                      -++++++++.++.+|. .+    .++|++|+++++.++.++  .|.++++|++|++++|.+..+  ..|  +++|++|++
T Consensus        13 ~~~~~c~~~~l~~ip~-~~----~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   87 (285)
T 1ozn_A           13 KVTTSCPQQGLQAVPV-GI----PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL   87 (285)
T ss_dssp             SCEEECCSSCCSSCCT-TC----CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CeEEEcCcCCcccCCc-CC----CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence            4689999999999988 44    379999999999999887  688999999999999988877  445  788888888


Q ss_pred             ecCc-ccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcc
Q psy11652        103 ANNY-LVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISK  175 (325)
Q Consensus       103 ~~~~-l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~  175 (325)
                      ++|. +..+  ..+..+++|++|++++|.++.++   +..+++|++|++++|.++.+ +..+..+++|+.|++++|.++.
T Consensus        88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  167 (285)
T 1ozn_A           88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS  167 (285)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence            8886 6655  56777777888887777777554   44567777777777777666 4456667777777777776666


Q ss_pred             cccCccC-CccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCccc
Q psy11652        176 LNANTFR-NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIE  245 (325)
Q Consensus       176 ~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~  245 (325)
                      ++...+. .++|+.|++++|.+++..+..+..++ +|+.|++++|.+..++. .+..+++|+.|++++|.+.
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG-RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cCHHHhcCccccCEEECCCCcccccCHhHccCcc-cccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            6554333 36666677766666666556666666 66666666666665543 4566666666666666654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=2.5e-26  Score=202.43  Aligned_cols=241  Identities=18%  Similarity=0.239  Sum_probs=208.8

Q ss_pred             cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc-cc-c--cCCccEE
Q psy11652         27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL-DS-L--PKTMETL  100 (325)
Q Consensus        27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~-~~-l--~~~L~~L  100 (325)
                      ++|++|+++++.++.++...| ..+ ++|++|++++|.++.++  .|.++++|++|++++|.+..+ .. |  +++|++|
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~-~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  129 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDL-QRC-VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL  129 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTT-TTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred             ccCcEEECCCCcCcccCHHHh-ccC-CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence            489999999999999998777 777 99999999999999886  799999999999999999988 33 5  8999999


Q ss_pred             EeecCcccch-h--hhccCCCCCEEEccCC-cceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCc
Q psy11652        101 SVANNYLVNY-L--ELNRMTSLKWIVLSNN-YIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQ  172 (325)
Q Consensus       101 ~l~~~~l~~~-~--~~~~~~~L~~L~l~~~-~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~  172 (325)
                      ++++|.+..+ .  .+.++++|++|++++| .+..++   +..+++|++|++++|.++.. +..+..+++|+.|++.+|.
T Consensus       130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  209 (353)
T 2z80_A          130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ  209 (353)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred             ECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence            9999999887 3  5889999999999998 477665   66789999999999999988 8899999999999999999


Q ss_pred             CcccccCccC-CccccEEEcccCCCcccChhhhh---CccccCCEEEccCCCCc-----CchHhhhCCCCCCEEeCCCCc
Q psy11652        173 ISKLNANTFR-NLNVFRLYLKFNKISEIHDFAFN---GLNSTLEFLDLENNRLT-----NINQCFRNLKKLKYLYLHNNN  243 (325)
Q Consensus       173 l~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~---~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~  243 (325)
                      ++.++...+. .++|+.|++++|.+++.....+.   ... .++.+++.++.+.     .+|..+..+++|+.|++++|.
T Consensus       210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~-~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~  288 (353)
T 2z80_A          210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS-LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ  288 (353)
T ss_dssp             STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCC-CCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred             cccchhhhhhhcccccEEECCCCccccccccccccccccc-hhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence            9877766554 48999999999999876544333   233 7888888888776     467788999999999999999


Q ss_pred             ccccccchhccCccCCEEEccCCCCcc
Q psy11652        244 IEFIQNNTFEHLVNLKSISLSGNKLTR  270 (325)
Q Consensus       244 l~~~~~~~l~~~~~L~~L~l~~n~l~~  270 (325)
                      ++.++...+..+++|+.|++++|.+..
T Consensus       289 l~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          289 LKSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccCHHHHhcCCCCCEEEeeCCCccC
Confidence            999888778899999999999999883

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=4.2e-25  Score=188.83  Aligned_cols=215  Identities=23%  Similarity=0.328  Sum_probs=141.1

Q ss_pred             cEEEccCCCCccc-ccccCCccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCc-c
Q psy11652         78 LWLNMDSNLLQTL-DSLPKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNL-I  150 (325)
Q Consensus        78 ~~L~l~~~~~~~~-~~l~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~-~  150 (325)
                      ++++.+++.+..+ ..++++|++|++++|.+..+  ..+..+++|++|++++|.++.++   +..+++|++|++++|. +
T Consensus        14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l   93 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (285)
T ss_dssp             CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence            3444544444444 33355566666665555555  34556666666666666666543   4456666677776665 5


Q ss_pred             ccc-hhhccCCCCccEEEccCCcCcccccCccC-CccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-h
Q psy11652        151 STI-NLNLNNTYYIKDLILSYNQISKLNANTFR-NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-C  227 (325)
Q Consensus       151 ~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~  227 (325)
                      +.+ +..+..+++|+.|++.+|.++.+++..+. .++|++|++++|.++..++..+..++ +|+.|++++|.++.++. .
T Consensus        94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~  172 (285)
T 1ozn_A           94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-NLTHLFLHGNRISSVPERA  172 (285)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCEECTTT
T ss_pred             cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC-CccEEECCCCcccccCHHH
Confidence            555 56666677777777777776665544433 37777777777777766666666676 77777777777776654 4


Q ss_pred             hhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCccc
Q psy11652        228 FRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL  293 (325)
Q Consensus       228 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~  293 (325)
                      +..+++|++|++++|.++++.+..+..+++|+.|++++|.++.++.  +..+++|+.|++++|++...
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence            6677777777777777777666667777777777777777776665  67777777777777777643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=5.2e-25  Score=206.22  Aligned_cols=242  Identities=24%  Similarity=0.253  Sum_probs=211.8

Q ss_pred             cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccccCCccEEEeecCc
Q psy11652         27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNY  106 (325)
Q Consensus        27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~L~~L~l~~~~  106 (325)
                      ++|++|++++|.++.+|.  .    +++|++|++++|.++.+|.  .+++|++|++++|.+..++..+++|+.|++++|.
T Consensus        61 ~~L~~L~L~~N~l~~lp~--~----l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~  132 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA--L----PPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQ  132 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC--C----CTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSC
T ss_pred             CCCcEEEecCCCCCCCCC--c----CCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCC
Confidence            689999999999998887  2    3899999999999998876  7899999999999998885578999999999999


Q ss_pred             ccchhhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccc
Q psy11652        107 LVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNV  186 (325)
Q Consensus       107 l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L  186 (325)
                      ++.++.  .+++|++|++++|.++.+|. .+.+|+.|++++|.++.++   ..+++|+.|++++|.++.++..   .++|
T Consensus       133 l~~lp~--~l~~L~~L~Ls~N~l~~l~~-~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L  203 (622)
T 3g06_A          133 LTSLPV--LPPGLQELSVSDNQLASLPA-LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTL---PSEL  203 (622)
T ss_dssp             CSCCCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCC---CTTC
T ss_pred             CCcCCC--CCCCCCEEECcCCcCCCcCC-ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCc---cchh
Confidence            888733  24899999999999998773 4578999999999999987   4578999999999999887753   3789


Q ss_pred             cEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCC
Q psy11652        187 FRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN  266 (325)
Q Consensus       187 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n  266 (325)
                      +.|++++|.++.++.    .++ +|+.|++++|.++.+|   ..+++|+.|++++|.++.++.    .+++|+.|++++|
T Consensus       204 ~~L~L~~N~l~~l~~----~~~-~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N  271 (622)
T 3g06_A          204 YKLWAYNNRLTSLPA----LPS-GLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRN  271 (622)
T ss_dssp             CEEECCSSCCSSCCC----CCT-TCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS
T ss_pred             hEEECcCCcccccCC----CCC-CCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCC
Confidence            999999999987753    235 9999999999999887   566899999999999998776    4689999999999


Q ss_pred             CCcccCC-CCCCCCCCEEECCCCcCccccccc
Q psy11652        267 KLTRIPD-FIHNKRLSHLNLGYNFLNELILES  297 (325)
Q Consensus       267 ~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~~~  297 (325)
                      .++.+|. +..+++|+.|++++|++++..+..
T Consensus       272 ~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~  303 (622)
T 3g06_A          272 QLTRLPESLIHLSSETTVNLEGNPLSERTLQA  303 (622)
T ss_dssp             CCCSCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred             CCCcCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence            9999998 999999999999999999877664

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.5e-27  Score=205.72  Aligned_cols=232  Identities=25%  Similarity=0.318  Sum_probs=111.8

Q ss_pred             cceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCcccccc--cCCccEEEeec
Q psy11652         29 LMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSVAN  104 (325)
Q Consensus        29 L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l~~  104 (325)
                      ++..+++.+.+...+...+ .. +++|++|++++|.++.++  .+.++++|++|++++|.+.....+  +++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~-~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLR-QS-AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHH-TT-GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHh-cc-CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcC
Confidence            3444445555544443222 22 256666666666666554  555666666666666655444223  45555555555


Q ss_pred             CcccchhhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCccCC
Q psy11652        105 NYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFRN  183 (325)
Q Consensus       105 ~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~  183 (325)
                      |.+..+.   ..++|++|++++|.++.++...+++|++|++++|.++.+ +..+..+++|+.                  
T Consensus        90 n~l~~l~---~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~------------------  148 (317)
T 3o53_A           90 NYVQELL---VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY------------------  148 (317)
T ss_dssp             SEEEEEE---ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEE------------------
T ss_pred             Ccccccc---CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCE------------------
Confidence            5443331   124455555555544444422344444444444444444 333444444444                  


Q ss_pred             ccccEEEcccCCCcccChhhhh-CccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEE
Q psy11652        184 LNVFRLYLKFNKISEIHDFAFN-GLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSIS  262 (325)
Q Consensus       184 ~~L~~L~l~~~~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~  262 (325)
                           |++++|.++...+..+. .++ +|+.|++++|.+..++. ...+++|++|++++|.++++++. +..+++|+.|+
T Consensus       149 -----L~Ls~N~l~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~  220 (317)
T 3o53_A          149 -----LDLKLNEIDTVNFAELAASSD-TLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWIS  220 (317)
T ss_dssp             -----EECTTSCCCEEEGGGGGGGTT-TCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEE
T ss_pred             -----EECCCCCCCcccHHHHhhccC-cCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcchhh-hcccCcccEEE
Confidence                 44444444443333332 233 55555555555444432 12345555555555555554442 44455555555


Q ss_pred             ccCCCCcccCC-CCCCCCCCEEECCCCcCc
Q psy11652        263 LSGNKLTRIPD-FIHNKRLSHLNLGYNFLN  291 (325)
Q Consensus       263 l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~  291 (325)
                      +++|.++.+|. +..+++|+.|++++|+++
T Consensus       221 L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          221 LRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             CcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence            55555555554 555555555555555555

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=5e-26  Score=197.51  Aligned_cols=212  Identities=23%  Similarity=0.268  Sum_probs=166.4

Q ss_pred             cCCccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccC
Q psy11652         94 PKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSY  170 (325)
Q Consensus        94 ~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  170 (325)
                      +++|++|++++|.+...  ..+..+++|++|++++|.++.++ +..+++|++|++++|.++.++    ..++|+.|++++
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~  108 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VGPSIETLHAAN  108 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE----ECTTCCEEECCS
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc----CCCCcCEEECCC
Confidence            45666666666666655  45667777777777777776544 666777777777777777653    226788888888


Q ss_pred             CcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCch-Hhh-hCCCCCCEEeCCCCcccccc
Q psy11652        171 NQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCF-RNLKKLKYLYLHNNNIEFIQ  248 (325)
Q Consensus       171 ~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~-~~~~~L~~L~l~~~~l~~~~  248 (325)
                      |.++.++...  .++|+.|++++|.++...+..+..++ +|+.|++++|.+..++ ..+ ..+++|++|++++|.+++++
T Consensus       109 n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  185 (317)
T 3o53_A          109 NNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK  185 (317)
T ss_dssp             SCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred             CccCCcCccc--cCCCCEEECCCCCCCCccchhhhccC-CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence            8887666543  46799999999999988877888888 9999999999998654 344 47899999999999999875


Q ss_pred             cchhccCccCCEEEccCCCCcccCC-CCCCCCCCEEECCCCcCcccccccccchhhhcccccccccce
Q psy11652        249 NNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNA  315 (325)
Q Consensus       249 ~~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~  315 (325)
                      .  ...+++|+.|++++|.++.+|+ +..+++|+.|++++|.++.+|... .....+..+++..|++.
T Consensus       186 ~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~-~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          186 G--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL-RFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             C--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTC-CCCTTCCEEECTTCCCB
T ss_pred             c--ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHh-hcCCCCCEEEccCCCcc
Confidence            4  3348999999999999999988 889999999999999999988753 34456778888888886

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=1.8e-25  Score=194.72  Aligned_cols=229  Identities=15%  Similarity=0.095  Sum_probs=142.3

Q ss_pred             cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc-ccc--cCCccEEEe
Q psy11652         27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL-DSL--PKTMETLSV  102 (325)
Q Consensus        27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~l--~~~L~~L~l  102 (325)
                      +++++|+++++.++.+|. .+ .++ ++|++|++++|.+..+| .+.++++|++|++++|.+..+ ..+  +++|+.|++
T Consensus        81 ~~l~~L~L~~n~l~~lp~-~l-~~l-~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPD-QA-FRL-SHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCSSCCS-CG-GGG-TTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCchhcCh-hh-hhC-CCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence            466667777666666666 44 444 66677777666666666 566666666666666666544 334  556666666


Q ss_pred             ecCcccch--hhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCc
Q psy11652        103 ANNYLVNY--LELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANT  180 (325)
Q Consensus       103 ~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  180 (325)
                      ++|.....  ..+..      ..+.+    .  +..+++|++|++++|.++.+|..+.++++|+.|++++|.+..++..+
T Consensus       158 ~~n~~~~~~p~~~~~------~~~~~----~--~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l  225 (328)
T 4fcg_A          158 RACPELTELPEPLAS------TDASG----E--HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAI  225 (328)
T ss_dssp             EEETTCCCCCSCSEE------EC-CC----C--EEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGG
T ss_pred             CCCCCccccChhHhh------ccchh----h--hccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhh
Confidence            55433222  11111      00000    0  11356666666666666655666677777777777777777666655


Q ss_pred             cCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCc-CchHhhhCCCCCCEEeCCCCcccccccchhccCccCC
Q psy11652        181 FRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK  259 (325)
Q Consensus       181 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~  259 (325)
                      ...++|+.|++++|.+.+..+..+..++ +|+.|++++|.+. .+|..+..+++|++|++++|.+.+..|..++.+++++
T Consensus       226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~-~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~  304 (328)
T 4fcg_A          226 HHLPKLEELDLRGCTALRNYPPIFGGRA-PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC  304 (328)
T ss_dssp             GGCTTCCEEECTTCTTCCBCCCCTTCCC-CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred             ccCCCCCEEECcCCcchhhhHHHhcCCC-CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence            5557777777777766666566667776 7777777776543 6666677777777777777776665566777777777


Q ss_pred             EEEccCCCCccc
Q psy11652        260 SISLSGNKLTRI  271 (325)
Q Consensus       260 ~L~l~~n~l~~l  271 (325)
                      .+++..+.+..+
T Consensus       305 ~l~l~~~~~~~l  316 (328)
T 4fcg_A          305 IILVPPHLQAQL  316 (328)
T ss_dssp             EEECCGGGSCC-
T ss_pred             EEeCCHHHHHHH
Confidence            777766655543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=5.5e-25  Score=191.71  Aligned_cols=231  Identities=19%  Similarity=0.172  Sum_probs=184.8

Q ss_pred             cCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc-ccc--cCCccEEEeecCcccch-hhhccCCCCCEEEccCC
Q psy11652         53 NKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL-DSL--PKTMETLSVANNYLVNY-LELNRMTSLKWIVLSNN  127 (325)
Q Consensus        53 ~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~l--~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~  127 (325)
                      ++++.|+++++.+..+| .+.++++|++|++++|.+..+ ..+  +++|+.|++++|.+..+ ..+.++++|++|++++|
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n  160 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC  160 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence            68888899888888888 677788888888888888766 455  78888888888877766 67777888888888776


Q ss_pred             cce-eecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhC
Q psy11652        128 YIK-EFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNG  206 (325)
Q Consensus       128 ~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~  206 (325)
                      .+. .+|.    .+....        ....+.++++|+.|++++|.++.++..+..+++|+.|++++|.++++++ .+..
T Consensus       161 ~~~~~~p~----~~~~~~--------~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~-~l~~  227 (328)
T 4fcg_A          161 PELTELPE----PLASTD--------ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP-AIHH  227 (328)
T ss_dssp             TTCCCCCS----CSEEEC---------CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCG-GGGG
T ss_pred             CCccccCh----hHhhcc--------chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCch-hhcc
Confidence            543 4441    111111        1234667999999999999999888877777999999999999998765 5888


Q ss_pred             ccccCCEEEccCCCCc-CchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCc-ccCC-CCCCCCCCEE
Q psy11652        207 LNSTLEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT-RIPD-FIHNKRLSHL  283 (325)
Q Consensus       207 ~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~l~~-~~~~~~L~~L  283 (325)
                      ++ +|+.|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .+|. +..+++|+.+
T Consensus       228 l~-~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l  306 (328)
T 4fcg_A          228 LP-KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII  306 (328)
T ss_dssp             CT-TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred             CC-CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence            88 9999999998765 77778999999999999999888777778899999999999998876 7888 9999999999


Q ss_pred             ECCCCcCccccccc
Q psy11652        284 NLGYNFLNELILES  297 (325)
Q Consensus       284 ~l~~n~i~~~~~~~  297 (325)
                      ++..+.+..+....
T Consensus       307 ~l~~~~~~~l~~~~  320 (328)
T 4fcg_A          307 LVPPHLQAQLDQHR  320 (328)
T ss_dssp             ECCGGGSCC-----
T ss_pred             eCCHHHHHHHhhhh
Confidence            99988877766543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=8.3e-25  Score=200.47  Aligned_cols=35  Identities=31%  Similarity=0.462  Sum_probs=15.2

Q ss_pred             CccEEECCCCcccccc--cccCCCCccEEEccCCCCc
Q psy11652         54 KLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQ   88 (325)
Q Consensus        54 ~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~   88 (325)
                      +|++|+|++|.+..++  .|.++++|++|++++|.+.
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~   71 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY   71 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCE
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCC
Confidence            4444444444444433  3444444444444444433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=1.2e-25  Score=194.60  Aligned_cols=195  Identities=17%  Similarity=0.091  Sum_probs=110.2

Q ss_pred             cCCccEEEeecCcccch--hhh--ccCCCCCEEEccCCcceeec--CC-----CCCCccEEEccCCccccc-hhhccCCC
Q psy11652         94 PKTMETLSVANNYLVNY--LEL--NRMTSLKWIVLSNNYIKEFV--IP-----NRKHIEKLDLSNNLISTI-NLNLNNTY  161 (325)
Q Consensus        94 ~~~L~~L~l~~~~l~~~--~~~--~~~~~L~~L~l~~~~~~~~~--~~-----~~~~L~~L~l~~~~~~~~-~~~~~~~~  161 (325)
                      +++|++|++++|.+...  ..+  ..+++|++|++++|.++.+|  +.     .+++|++|++++|.++.+ +..|++++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            44555555555555432  222  45555555555555555433  11     125666666666666555 45566666


Q ss_pred             CccEEEccCCcCcc---cccCc--cCCccccEEEcccCCCccc---ChhhhhCccccCCEEEccCCCCcCch--HhhhCC
Q psy11652        162 YIKDLILSYNQISK---LNANT--FRNLNVFRLYLKFNKISEI---HDFAFNGLNSTLEFLDLENNRLTNIN--QCFRNL  231 (325)
Q Consensus       162 ~L~~L~l~~~~l~~---~~~~~--~~~~~L~~L~l~~~~l~~~---~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~  231 (325)
                      +|+.|++++|.+..   ++...  ...++|++|++++|.++..   ....+..++ +|+.|++++|.+...+  ..+..+
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV-QLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC-CCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC-CCCEEECCCCcCCcccchhhhhhc
Confidence            66666666665432   11112  2336666666666666532   223334555 6777777777666433  234455


Q ss_pred             CCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCCCCCCCCCCEEECCCCcCcc
Q psy11652        232 KKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNE  292 (325)
Q Consensus       232 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~i~~  292 (325)
                      ++|++|++++|.++.++... .  ++|+.|++++|+++.+|.+..+++|+.|++++|++++
T Consensus       253 ~~L~~L~Ls~N~l~~ip~~~-~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          253 SQLNSLNLSFTGLKQVPKGL-P--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TTCCEEECTTSCCSSCCSSC-C--SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTC
T ss_pred             CCCCEEECCCCccChhhhhc-c--CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCC
Confidence            66777777777766554422 2  5677777777777766556666777777777777664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.91  E-value=1.6e-25  Score=204.20  Aligned_cols=265  Identities=16%  Similarity=0.138  Sum_probs=160.2

Q ss_pred             cccccceEEcCCCceeeecCCCcCccccc----CccEEECCCCcccc-----cc-cccCCCCccEEEccCCCCccc--cc
Q psy11652         25 SCILLMSAENEDNQIAELETANWSPEIQN----KLTTLFIGENHIHQ-----IE-NLNGFRSILWLNMDSNLLQTL--DS   92 (325)
Q Consensus        25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~----~L~~L~l~~~~~~~-----~~-~~~~~~~L~~L~l~~~~~~~~--~~   92 (325)
                      .+++|++|+++++.+++.....+ ....+    +|++|++++|.++.     ++ .+..+++|++|++++|.+.+.  ..
T Consensus        54 ~~~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  132 (461)
T 1z7x_W           54 VNPALAELNLRSNELGDVGVHCV-LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL  132 (461)
T ss_dssp             TCTTCCEEECTTCCCHHHHHHHH-HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH
T ss_pred             hCCCcCEEeCCCCcCChHHHHHH-HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH
Confidence            56788888888887775433233 22223    68888888887774     23 677788888888888877654  22


Q ss_pred             c-------cCCccEEEeecCcccch------hhhccCCCCCEEEccCCcceeec---C-----CCCCCccEEEccCCccc
Q psy11652         93 L-------PKTMETLSVANNYLVNY------LELNRMTSLKWIVLSNNYIKEFV---I-----PNRKHIEKLDLSNNLIS  151 (325)
Q Consensus        93 l-------~~~L~~L~l~~~~l~~~------~~~~~~~~L~~L~l~~~~~~~~~---~-----~~~~~L~~L~l~~~~~~  151 (325)
                      +       .++|++|++++|.++..      ..+..+++|++|++++|.++...   .     ...++|++|++++|.++
T Consensus       133 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  212 (461)
T 1z7x_W          133 LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT  212 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred             HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence            2       34688888888876653      45566788888888888766322   1     13557778888777776


Q ss_pred             c-----chhhccCCCCccEEEccCCcCccc-----ccCcc-CCccccEEEcccCCCcccC----hhhhhCccccCCEEEc
Q psy11652        152 T-----INLNLNNTYYIKDLILSYNQISKL-----NANTF-RNLNVFRLYLKFNKISEIH----DFAFNGLNSTLEFLDL  216 (325)
Q Consensus       152 ~-----~~~~~~~~~~L~~L~l~~~~l~~~-----~~~~~-~~~~L~~L~l~~~~l~~~~----~~~~~~~~~~L~~L~l  216 (325)
                      .     ++..+..+++|+.|++++|.++..     ...+. ..++|++|++++|.++...    +..+..++ +|+.|++
T Consensus       213 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L  291 (461)
T 1z7x_W          213 SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE-SLKELSL  291 (461)
T ss_dssp             TTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT-TCCEEEC
T ss_pred             HHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC-CcceEEC
Confidence            5     245566677777777777766532     12222 2467777777777776532    33444455 6777777


Q ss_pred             cCCCCcCc-----hHhhh-CCCCCCEEeCCCCcccccc----cchhccCccCCEEEccCCCCcccC-C-C----C-CCCC
Q psy11652        217 ENNRLTNI-----NQCFR-NLKKLKYLYLHNNNIEFIQ----NNTFEHLVNLKSISLSGNKLTRIP-D-F----I-HNKR  279 (325)
Q Consensus       217 ~~~~l~~~-----~~~~~-~~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~L~l~~n~l~~l~-~-~----~-~~~~  279 (325)
                      ++|.++..     ...+. ..++|++|++++|.++...    +..+..+++|+.|++++|.+++.. . +    . ..++
T Consensus       292 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~  371 (461)
T 1z7x_W          292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV  371 (461)
T ss_dssp             TTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred             CCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCc
Confidence            77766521     11111 2246666666666655432    223444566666666666665321 1 1    1 1456


Q ss_pred             CCEEECCCCcCc
Q psy11652        280 LSHLNLGYNFLN  291 (325)
Q Consensus       280 L~~L~l~~n~i~  291 (325)
                      |+.|++++|.++
T Consensus       372 L~~L~L~~n~i~  383 (461)
T 1z7x_W          372 LRVLWLADCDVS  383 (461)
T ss_dssp             CCEEECTTSCCC
T ss_pred             eEEEECCCCCCC
Confidence            666666666665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=4.9e-23  Score=175.14  Aligned_cols=214  Identities=23%  Similarity=0.284  Sum_probs=157.2

Q ss_pred             EEccCCCCccc-ccccCCccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc
Q psy11652         80 LNMDSNLLQTL-DSLPKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI  153 (325)
Q Consensus        80 L~l~~~~~~~~-~~l~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~  153 (325)
                      ++..+..+..+ ..++++|++|++++|.+..+  ..+.++++|++|++++|.++.++   +..+++|++|++++|.++.+
T Consensus        12 ~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~   91 (276)
T 2z62_A           12 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL   91 (276)
T ss_dssp             EECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             EEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence            34444444444 33466677777777776666  36677777888888777777665   45677888888888887777


Q ss_pred             -hhhccCCCCccEEEccCCcCcccccCcc-CCccccEEEcccCCCcccC-hhhhhCccccCCEEEccCCCCcCchH-hhh
Q psy11652        154 -NLNLNNTYYIKDLILSYNQISKLNANTF-RNLNVFRLYLKFNKISEIH-DFAFNGLNSTLEFLDLENNRLTNINQ-CFR  229 (325)
Q Consensus       154 -~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~  229 (325)
                       +..|.++++|+.|++.+|.+..++...+ ..++|++|++++|.++... +..+..++ +|+.|++++|.+..++. .+.
T Consensus        92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~  170 (276)
T 2z62_A           92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYCTDLR  170 (276)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECCSSCCCEECGGGGH
T ss_pred             ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC-CCCEEECCCCCCCcCCHHHhh
Confidence             5677888888888888888777665333 3488888888888887753 56777887 88888888888876543 444


Q ss_pred             CCCCCC----EEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCccccc
Q psy11652        230 NLKKLK----YLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELIL  295 (325)
Q Consensus       230 ~~~~L~----~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~  295 (325)
                      .+++++    .|++++|.++++++..+.. .+|+.|++++|.++.+|.  +..+++|+.|++++|+++.--+
T Consensus       171 ~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             HHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             hhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            444444    8899999988877755553 489999999999998887  7888999999999999886544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=2.2e-23  Score=190.98  Aligned_cols=213  Identities=28%  Similarity=0.369  Sum_probs=186.7

Q ss_pred             cCCCCccEEEccCCCCccc--ccc--cCCccEEEeecCcccchhhhccCCCCCEEEccCCcceeecCCCCCCccEEEccC
Q psy11652         72 NGFRSILWLNMDSNLLQTL--DSL--PKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSN  147 (325)
Q Consensus        72 ~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~  147 (325)
                      ..+++|++|++++|.+..+  ..|  +++|+.|++++|.+.....+..+++|++|++++|.++.++.  .++|++|++++
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~--~~~L~~L~L~~  108 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV--GPSIETLHAAN  108 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE--CTTCCEEECCS
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC--CCCcCEEECcC
Confidence            3456999999999999888  456  89999999999999887559999999999999999998883  38999999999


Q ss_pred             CccccchhhccCCCCccEEEccCCcCcccccCcc-CCccccEEEcccCCCcccChhhhh-CccccCCEEEccCCCCcCch
Q psy11652        148 NLISTINLNLNNTYYIKDLILSYNQISKLNANTF-RNLNVFRLYLKFNKISEIHDFAFN-GLNSTLEFLDLENNRLTNIN  225 (325)
Q Consensus       148 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~  225 (325)
                      |.++.++.  ..+++|+.|++++|.++.+++..+ .+++|+.|++++|.+++..+..+. .++ +|+.|++++|.+..++
T Consensus       109 N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~-~L~~L~Ls~N~l~~~~  185 (487)
T 3oja_A          109 NNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQYNFIYDVK  185 (487)
T ss_dssp             SCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECTTSCCCEEE
T ss_pred             CcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC-cccEEecCCCcccccc
Confidence            99998832  246889999999999998765444 459999999999999988777776 677 9999999999999776


Q ss_pred             HhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC-CCCCCCCCEEECCCCcCc
Q psy11652        226 QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLN  291 (325)
Q Consensus       226 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~  291 (325)
                      . ...+++|+.|++++|.++++++. +..+++|+.|++++|.++.+|. +..+++|+.|++++|++.
T Consensus       186 ~-~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          186 G-QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             C-CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             c-cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence            5 34689999999999999998775 8889999999999999999998 889999999999999998

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.91  E-value=7.3e-25  Score=199.80  Aligned_cols=266  Identities=15%  Similarity=0.149  Sum_probs=207.6

Q ss_pred             ccceEEcCCCceeee-----cCCCcCcccccCccEEECCCCcccccc------c-ccCCCCccEEEccCCCCccc-----
Q psy11652         28 LLMSAENEDNQIAEL-----ETANWSPEIQNKLTTLFIGENHIHQIE------N-LNGFRSILWLNMDSNLLQTL-----   90 (325)
Q Consensus        28 ~L~~L~l~~~~i~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~------~-~~~~~~L~~L~l~~~~~~~~-----   90 (325)
                      +|++|++++|.+++.     +. .+ ..+ ++|++|++++|.+++..      . ....++|++|++++|.+...     
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~-~l-~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSS-TL-RTL-PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHH-HT-TSC-TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHH-HH-ccC-CceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence            699999999999843     33 45 555 89999999999987543      1 33467899999999988875     


Q ss_pred             -ccc--cCCccEEEeecCcccch--hhhc-----cCCCCCEEEccCCccee-----ec--CCCCCCccEEEccCCccccc
Q psy11652         91 -DSL--PKTMETLSVANNYLVNY--LELN-----RMTSLKWIVLSNNYIKE-----FV--IPNRKHIEKLDLSNNLISTI  153 (325)
Q Consensus        91 -~~l--~~~L~~L~l~~~~l~~~--~~~~-----~~~~L~~L~l~~~~~~~-----~~--~~~~~~L~~L~l~~~~~~~~  153 (325)
                       ..+  +++|++|++++|.+...  ..+.     ..++|++|++++|.++.     ++  ...+++|++|++++|.++..
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence             223  69999999999987765  2222     36799999999998885     34  44689999999999988754


Q ss_pred             ------hhhccCCCCccEEEccCCcCcc-----cccCccCCccccEEEcccCCCcccChhhhhCc----cccCCEEEccC
Q psy11652        154 ------NLNLNNTYYIKDLILSYNQISK-----LNANTFRNLNVFRLYLKFNKISEIHDFAFNGL----NSTLEFLDLEN  218 (325)
Q Consensus       154 ------~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~----~~~L~~L~l~~  218 (325)
                            +..+..+++|+.|++++|.++.     ++..+...++|+.|++++|.+++..+..+...    .++|+.|++++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  322 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence                  2334468999999999998885     45544456899999999999976555444433    13999999999


Q ss_pred             CCCcC-----chHhhhCCCCCCEEeCCCCcccccccchhcc-----CccCCEEEccCCCCc-----ccCC-CCCCCCCCE
Q psy11652        219 NRLTN-----INQCFRNLKKLKYLYLHNNNIEFIQNNTFEH-----LVNLKSISLSGNKLT-----RIPD-FIHNKRLSH  282 (325)
Q Consensus       219 ~~l~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~-----~~~L~~L~l~~n~l~-----~l~~-~~~~~~L~~  282 (325)
                      |.++.     ++..+..+++|++|++++|.++......+..     .++|+.|++++|.++     .++. +..+++|++
T Consensus       323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~  402 (461)
T 1z7x_W          323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE  402 (461)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred             CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence            99873     4557788899999999999988754444432     579999999999998     5666 778899999


Q ss_pred             EECCCCcCcccccc
Q psy11652        283 LNLGYNFLNELILE  296 (325)
Q Consensus       283 L~l~~n~i~~~~~~  296 (325)
                      |++++|+++.....
T Consensus       403 L~l~~N~i~~~~~~  416 (461)
T 1z7x_W          403 LDLSNNCLGDAGIL  416 (461)
T ss_dssp             EECCSSSCCHHHHH
T ss_pred             EECCCCCCCHHHHH
Confidence            99999999876544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.90  E-value=1.7e-23  Score=174.19  Aligned_cols=209  Identities=21%  Similarity=0.292  Sum_probs=165.2

Q ss_pred             cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCC-Cccc--ccc--cCCc
Q psy11652         25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNL-LQTL--DSL--PKTM   97 (325)
Q Consensus        25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~-~~~~--~~l--~~~L   97 (325)
                      .|..++.+++....++.+|.  +    .++|++|++++|.++.++  .|.++++|++|++++|. +..+  ..|  +++|
T Consensus         9 ~C~~~~~~~v~c~~l~~ip~--~----~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L   82 (239)
T 2xwt_C            9 ECHQEEDFRVTCKDIQRIPS--L----PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV   82 (239)
T ss_dssp             SEEECSTTEEEECSCSSCCC--C----CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTC
T ss_pred             eeCCCCcceeEccCccccCC--C----CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCC
Confidence            45443333333233666776  4    368999999999999988  78899999999999997 8777  356  8999


Q ss_pred             cEEEeec-Ccccch--hhhccCCCCCEEEccCCcceeec-CCCCCCcc---EEEccCC-ccccc-hhhccCCCCcc-EEE
Q psy11652         98 ETLSVAN-NYLVNY--LELNRMTSLKWIVLSNNYIKEFV-IPNRKHIE---KLDLSNN-LISTI-NLNLNNTYYIK-DLI  167 (325)
Q Consensus        98 ~~L~l~~-~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~---~L~l~~~-~~~~~-~~~~~~~~~L~-~L~  167 (325)
                      ++|++++ |.+..+  ..+.++++|++|++++|.++.+| +..+.+|+   +|++++| .++.+ +..|.++++|+ .|+
T Consensus        83 ~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~  162 (239)
T 2xwt_C           83 THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK  162 (239)
T ss_dssp             CEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEE
T ss_pred             cEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEE
Confidence            9999998 888877  57888999999999999998888 66777777   8999998 88887 56688888999 999


Q ss_pred             ccCCcCcccccCccCCccccEEEcccCC-CcccChhhhhCc-cccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCC
Q psy11652        168 LSYNQISKLNANTFRNLNVFRLYLKFNK-ISEIHDFAFNGL-NSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNN  242 (325)
Q Consensus       168 l~~~~l~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~  242 (325)
                      +++|.++.++...+..++|+.|++++|. ++.+++..|..+ + +|+.|++++|.+..+|..  .+++|+.|.+.++
T Consensus       163 l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~-~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          163 LYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS-GPSLLDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSB-CCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             cCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhcccc-CCcEEECCCCccccCChh--HhccCceeeccCc
Confidence            9988888888777766888888888884 888777777777 7 888888888887777653  5667777777654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.2e-22  Score=172.10  Aligned_cols=202  Identities=21%  Similarity=0.291  Sum_probs=131.9

Q ss_pred             ccccccccccchhhhhcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCC
Q psy11652          9 YVSGIQYGPCSENVQISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNL   86 (325)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~   86 (325)
                      .+|.|....|.     ...+.++++++++.++.+|. .+    ++++++|++++|.+..++  .|.++++|++|++++|.
T Consensus         3 ~~C~~~~~~C~-----c~~~~~~l~~~~~~l~~ip~-~~----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   72 (270)
T 2o6q_A            3 ALCKKDGGVCS-----CNNNKNSVDCSSKKLTAIPS-NI----PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK   72 (270)
T ss_dssp             CCBGGGTCSBE-----EETTTTEEECTTSCCSSCCS-CC----CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC
T ss_pred             ccCCCCCCCCE-----eCCCCCEEEccCCCCCccCC-CC----CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc
Confidence            34555555543     12358899999999999998 44    378999999999999887  78899999999999998


Q ss_pred             Cccc--ccc--cCCccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-hhh
Q psy11652         87 LQTL--DSL--PKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLN  156 (325)
Q Consensus        87 ~~~~--~~l--~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~  156 (325)
                      +..+  ..|  +++|++|++++|.+..+  ..+..+++|++|++++|.++.++   +..+++|++|++++|.++.+ +..
T Consensus        73 l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  152 (270)
T 2o6q_A           73 LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV  152 (270)
T ss_dssp             CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH
Confidence            8877  334  67777777777776666  34566667777777666666554   34555666666666665555 334


Q ss_pred             ccCCCCccEEEccCCcCcccccCccC-CccccEEEcccCCCcccChhhhhCccccCCEEEccCCCC
Q psy11652        157 LNNTYYIKDLILSYNQISKLNANTFR-NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRL  221 (325)
Q Consensus       157 ~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l  221 (325)
                      |..+++|+.|++.+|.++.++...+. .++|+.|++++|.++.+++..+..++ +|+.|++++|.+
T Consensus       153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~  217 (270)
T 2o6q_A          153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE-KLKMLQLQENPW  217 (270)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCB
T ss_pred             ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcccc-CCCEEEecCCCe
Confidence            55555666666665555555444332 25555555555555555444444444 555555555543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.90  E-value=1.5e-24  Score=187.76  Aligned_cols=240  Identities=18%  Similarity=0.110  Sum_probs=187.3

Q ss_pred             ccCCCCccEEEccCCCCccc-ccccCCccEEEeecCcccch---hhh-------ccCCCCCEEEccCCcce-eec--C--
Q psy11652         71 LNGFRSILWLNMDSNLLQTL-DSLPKTMETLSVANNYLVNY---LEL-------NRMTSLKWIVLSNNYIK-EFV--I--  134 (325)
Q Consensus        71 ~~~~~~L~~L~l~~~~~~~~-~~l~~~L~~L~l~~~~l~~~---~~~-------~~~~~L~~L~l~~~~~~-~~~--~--  134 (325)
                      ++..++|+++++++|.+ .+ ..+...|+.|++++|.+...   ..+       .++++|++|++++|.++ .+|  .  
T Consensus        39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEEEEECTTHHHHCCTT-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             EccCCCceeEeeccccc-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            44455667777777776 44 33444477777777766443   222       26899999999999998 566  3  


Q ss_pred             CCCCCccEEEccCCccccchhhccCC-----CCccEEEccCCcCcccccCcc-CCccccEEEcccCCCcccC--hhhh--
Q psy11652        135 PNRKHIEKLDLSNNLISTINLNLNNT-----YYIKDLILSYNQISKLNANTF-RNLNVFRLYLKFNKISEIH--DFAF--  204 (325)
Q Consensus       135 ~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~--~~~~--  204 (325)
                      ..+++|++|++++|.++..|..+..+     ++|+.|++++|.+..+++..+ ..++|+.|++++|.+.+..  +..+  
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            67899999999999998876666665     899999999999998885444 4599999999999976531  2233  


Q ss_pred             hCccccCCEEEccCCCCcCchH----hhhCCCCCCEEeCCCCccccccc-chhccCccCCEEEccCCCCcccCC-CCCCC
Q psy11652        205 NGLNSTLEFLDLENNRLTNINQ----CFRNLKKLKYLYLHNNNIEFIQN-NTFEHLVNLKSISLSGNKLTRIPD-FIHNK  278 (325)
Q Consensus       205 ~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~  278 (325)
                      ..++ +|++|++++|.+..++.    .+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.++.+|. +.  +
T Consensus       198 ~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~  274 (312)
T 1wwl_A          198 LKFP-TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--A  274 (312)
T ss_dssp             TSCT-TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--S
T ss_pred             ccCC-CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--C
Confidence            6787 99999999999985543    45688999999999999998653 455667999999999999999998 54  8


Q ss_pred             CCCEEECCCCcCcccccccccchhhhccccccccccee
Q psy11652        279 RLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAV  316 (325)
Q Consensus       279 ~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (325)
                      +|+.|++++|+++++|.  .....++..+++..|++..
T Consensus       275 ~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          275 KLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTTC
T ss_pred             CceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCCC
Confidence            99999999999999965  4444667788888998865

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.7e-22  Score=171.22  Aligned_cols=199  Identities=23%  Similarity=0.344  Sum_probs=173.4

Q ss_pred             CCccEEEeecCcccchhhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccC
Q psy11652         95 KTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSY  170 (325)
Q Consensus        95 ~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~  170 (325)
                      ...+.++++++.++.++. .-.+++++|++++|.++.++   +..+++|++|++++|.++.+ +..|.++++|+.|++++
T Consensus        16 ~~~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            467889999988887732 11268999999999999777   56789999999999999988 56678999999999999


Q ss_pred             CcCcccccCccCC-ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccc
Q psy11652        171 NQISKLNANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQ  248 (325)
Q Consensus       171 ~~l~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~  248 (325)
                      |.+..++...+.. ++|++|++++|.++..++..|..++ +|+.|++++|.+..++. .+..+++|+.|++++|.++.++
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc-CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence            9999888766554 9999999999999999888888998 99999999999997776 5788999999999999999988


Q ss_pred             cchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCccccc
Q psy11652        249 NNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELIL  295 (325)
Q Consensus       249 ~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~  295 (325)
                      +..+..+++|+.|++++|.++.+|.  +..+++|+.|++++|++..--.
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            8888899999999999999998887  8889999999999999876543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=6.9e-23  Score=176.91  Aligned_cols=212  Identities=20%  Similarity=0.301  Sum_probs=163.0

Q ss_pred             CccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEEeecCcccchhhhccCCCCCEEEccCCccee
Q psy11652         54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKE  131 (325)
Q Consensus        54 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~  131 (325)
                      .+..+.+..+.+.+......+++|++|+++++.+..++.+  +++|+.|++++|.+..+..+..+++|++|++++|.++.
T Consensus        20 ~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~   99 (308)
T 1h6u_A           20 NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN   99 (308)
T ss_dssp             HHHHHHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC
T ss_pred             HHHHHHhCCCCcCceecHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCC
Confidence            3444455556665544566688889999999888877666  88899999988888877558888888999888888887


Q ss_pred             ec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCcccc
Q psy11652        132 FV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNST  210 (325)
Q Consensus       132 ~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~  210 (325)
                      ++ +..+++|++|++++|.++.++. +..+++|+.|++++|.++.++. +...++|+.|++++|.+++.++  +..++ +
T Consensus       100 ~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~-~  174 (308)
T 1h6u_A          100 VSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLS-K  174 (308)
T ss_dssp             CGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCT-T
T ss_pred             chhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCC-C
Confidence            77 7778888888888888877743 7788888888888888877665 4455788888888888877654  66777 8


Q ss_pred             CCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC
Q psy11652        211 LEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD  273 (325)
Q Consensus       211 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~  273 (325)
                      |+.|++++|.+..++. +..+++|++|++++|.++++++  +..+++|+.|++++|.++..|.
T Consensus       175 L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          175 LTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             CCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred             CCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCe
Confidence            8888888888877665 6777888888888888877664  6777888888888888776554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=2e-22  Score=172.40  Aligned_cols=189  Identities=21%  Similarity=0.260  Sum_probs=99.4

Q ss_pred             cCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc--ccc--cCCccEEEeecCcccchhhhccCCCCCEEEccCC
Q psy11652         53 NKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLSVANNYLVNYLELNRMTSLKWIVLSNN  127 (325)
Q Consensus        53 ~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~  127 (325)
                      +++++++++++.++.+| .+.  ++++.|++++|.+..+  ..|  +++|+.|++++|.++.+.....+++|++|++++|
T Consensus        10 ~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N   87 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN   87 (290)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSS
T ss_pred             CCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCC
Confidence            45556666655555555 222  4555555555555544  233  5555555555555555433345555555555555


Q ss_pred             cceeec--CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCCcccChhh
Q psy11652        128 YIKEFV--IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKISEIHDFA  203 (325)
Q Consensus       128 ~~~~~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~  203 (325)
                      .++.+|  +..+++|++|++++|.++.+ +..|.++++|+.|++++|.++.+++..+.. ++|+.|++++|.++.+++..
T Consensus        88 ~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~  167 (290)
T 1p9a_G           88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL  167 (290)
T ss_dssp             CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTT
T ss_pred             cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHH
Confidence            555544  33455555555555555555 344555555555555555555554444332 55555555555555555444


Q ss_pred             hhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcc
Q psy11652        204 FNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNI  244 (325)
Q Consensus       204 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l  244 (325)
                      |..++ +|+.|++++|.+..+|..+....+|+.+++.+|.+
T Consensus       168 ~~~l~-~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          168 LNGLE-NLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             TTTCT-TCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             hcCcC-CCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence            45554 55555555555555555444445555555555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=1.9e-22  Score=171.48  Aligned_cols=213  Identities=20%  Similarity=0.230  Sum_probs=140.6

Q ss_pred             ceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCccEEEee
Q psy11652         30 MSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLSVA  103 (325)
Q Consensus        30 ~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l~  103 (325)
                      ...++.+..++.+|. .+    .++|++|++++|.++.++  .|.++++|++|++++|.+..+  ..|  +++|+.|+++
T Consensus        10 ~~~~c~~~~l~~ip~-~l----~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~   84 (276)
T 2z62_A           10 ITYQCMELNFYKIPD-NL----PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT   84 (276)
T ss_dssp             TEEECTTSCCSSCCS-SS----CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             ceEEecCCCccccCC-CC----CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECC
Confidence            356777777888887 44    367999999999888877  678888888888888877665  234  5556666665


Q ss_pred             cCcccch--hhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcc--ccc
Q psy11652        104 NNYLVNY--LELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISK--LNA  178 (325)
Q Consensus       104 ~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~--~~~  178 (325)
                      +|.+...  ..+.++++|++|++++|                     .+..+ +..+..+++|+.|++++|.++.  ++.
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~l~~n---------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~  143 (276)
T 2z62_A           85 GNPIQSLALGAFSGLSSLQKLVAVET---------------------NLASLENFPIGHLKTLKELNVAHNLIQSFKLPE  143 (276)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTS---------------------CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred             CCccCccChhhhcCCccccEEECCCC---------------------CccccCchhcccCCCCCEEECcCCccceecCch
Confidence            5555444  33444555555555444                     44444 2345555566666666665554  233


Q ss_pred             CccCCccccEEEcccCCCcccChhhhhCccccCC----EEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhcc
Q psy11652        179 NTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLE----FLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEH  254 (325)
Q Consensus       179 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~----~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~  254 (325)
                      .+...++|+.|++++|.+++.++..+..++ .++    .+++++|.+..++.......+|+.|++++|.++++++..+..
T Consensus       144 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  222 (276)
T 2z62_A          144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR  222 (276)
T ss_dssp             GGGGCTTCCEEECCSSCCCEECGGGGHHHH-TCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTT
T ss_pred             hhccCCCCCEEECCCCCCCcCCHHHhhhhh-hccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcc
Confidence            333446666666666666666555565555 555    777778777766654445557888888888888777767777


Q ss_pred             CccCCEEEccCCCCc
Q psy11652        255 LVNLKSISLSGNKLT  269 (325)
Q Consensus       255 ~~~L~~L~l~~n~l~  269 (325)
                      +++|+.|++++|.+.
T Consensus       223 l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          223 LTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CCSCCEEECCSSCBC
T ss_pred             cccccEEEccCCccc
Confidence            888888888888777

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.6e-23  Score=177.79  Aligned_cols=196  Identities=21%  Similarity=0.320  Sum_probs=103.7

Q ss_pred             cCCccEEEeecCcccchhhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCC
Q psy11652         94 PKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYN  171 (325)
Q Consensus        94 ~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~  171 (325)
                      +++|+.|+++++.+.....+..+++|++|++++|.++.++ +..+++|++|++++|.++.+ +..+.++++|+.|++.+|
T Consensus        40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  119 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN  119 (272)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC
Confidence            3444444444444443334444455555555555444444 44445555555555555544 334455555555555555


Q ss_pred             cCcccccCccC-CccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCccccccc
Q psy11652        172 QISKLNANTFR-NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQN  249 (325)
Q Consensus       172 ~l~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~  249 (325)
                      .++.+++..+. +++|++|++++|.+++.++..+..++ +|+.|++++|.++.++. .+..+++|++|++++|.++++++
T Consensus       120 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT-NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc-cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            55555444332 25555555555555555554555555 66666666665554443 34555666666666666666555


Q ss_pred             chhccCccCCEEEccCCCCcccCCCCCCCCCCEEECCCCcCccccc
Q psy11652        250 NTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELIL  295 (325)
Q Consensus       250 ~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~i~~~~~  295 (325)
                      ..+..+++|+.|++++|.+..     .+++|+.+++++|.+++..+
T Consensus       199 ~~~~~l~~L~~L~l~~N~~~~-----~~~~l~~l~~~~n~~~g~ip  239 (272)
T 3rfs_A          199 GVFDRLTSLQYIWLHDNPWDC-----TCPGIRYLSEWINKHSGVVR  239 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCBCC-----CTTTTHHHHHHHHHTGGGBB
T ss_pred             HHHhCCcCCCEEEccCCCccc-----cCcHHHHHHHHHHhCCCccc
Confidence            555556666666666665542     34455556666555554333

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=7.7e-23  Score=176.59  Aligned_cols=215  Identities=20%  Similarity=0.251  Sum_probs=176.1

Q ss_pred             cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEEe
Q psy11652         25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSV  102 (325)
Q Consensus        25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l  102 (325)
                      .+.++..+.+....++++..  + ..+ ++|++|+++++.+..++.+..+++|++|++++|.+..+..+  +++|+.|++
T Consensus        17 ~l~~~~~~~l~~~~~~~~~~--~-~~l-~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L   92 (308)
T 1h6u_A           17 ALANAIKIAAGKSNVTDTVT--Q-ADL-DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELEL   92 (308)
T ss_dssp             HHHHHHHHHTTCSSTTSEEC--H-HHH-HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEEC
T ss_pred             HHHHHHHHHhCCCCcCceec--H-HHc-CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEc
Confidence            44455555666666665433  2 344 88899999888888888788888899999998888877446  888999999


Q ss_pred             ecCcccchhhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCcc
Q psy11652        103 ANNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTF  181 (325)
Q Consensus       103 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  181 (325)
                      ++|.+..+..+..+++|++|++++|.++.++ +..+++|++|++++|.++.++. +..+++|+.|++++|.++.++. +.
T Consensus        93 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~  170 (308)
T 1h6u_A           93 SGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LA  170 (308)
T ss_dssp             CSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GT
T ss_pred             cCCcCCCchhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hc
Confidence            9988888877888999999999999988877 7788999999999999888744 7888999999999999888776 55


Q ss_pred             CCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCccccccc
Q psy11652        182 RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQN  249 (325)
Q Consensus       182 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~  249 (325)
                      .+++|+.|++++|.+++.++  +..++ +|+.|++++|.+..++. +..+++|+.|++++|.++..+.
T Consensus       171 ~l~~L~~L~l~~n~l~~~~~--l~~l~-~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          171 NLSKLTTLKADDNKISDISP--LASLP-NLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             TCTTCCEEECCSSCCCCCGG--GGGCT-TCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCE
T ss_pred             CCCCCCEEECCCCccCcChh--hcCCC-CCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCe
Confidence            56999999999999988764  77887 99999999999987774 7889999999999999877554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=3e-22  Score=171.38  Aligned_cols=197  Identities=26%  Similarity=0.290  Sum_probs=122.3

Q ss_pred             cccCCCCccEEEccCCCCccc-ccccCCccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec-CCCCCCccEEEc
Q psy11652         70 NLNGFRSILWLNMDSNLLQTL-DSLPKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDL  145 (325)
Q Consensus        70 ~~~~~~~L~~L~l~~~~~~~~-~~l~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l  145 (325)
                      .+.+++++++++++++.++.+ ..++++++.|++++|.+..+  ..+..+++|++|++++|.++.++ ...+++|++|++
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L   84 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL   84 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred             cccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence            456788899999999988888 55688899999988888777  57788888888888888888766 556677777777


Q ss_pred             cCCccccchhhccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCc
Q psy11652        146 SNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI  224 (325)
Q Consensus       146 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~  224 (325)
                      ++|.++.+|..+..+++|+.|++++|.++.+++..+.. ++|+.|++++|.++.+++..|..++ +|+.|++++|.+..+
T Consensus        85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G           85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-KLEKLSLANNNLTEL  163 (290)
T ss_dssp             CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCSCC
T ss_pred             CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccccc-CCCEEECCCCcCCcc
Confidence            77776666555666666666666666666555443332 5555555555555555444444444 555555555544444


Q ss_pred             hH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCC
Q psy11652        225 NQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL  268 (325)
Q Consensus       225 ~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l  268 (325)
                      |. .+..+++|+.|++++|.++.++.. +...++|+.+++++|.+
T Consensus       164 ~~~~~~~l~~L~~L~L~~N~l~~ip~~-~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          164 PAGLLNGLENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCCCSEEECCSCCB
T ss_pred             CHHHhcCcCCCCEEECCCCcCCccChh-hcccccCCeEEeCCCCc
Confidence            43 233444444444444444444332 22233444444444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=1.1e-22  Score=169.29  Aligned_cols=200  Identities=20%  Similarity=0.250  Sum_probs=156.2

Q ss_pred             CcccccccCCccEEEeecCcccch--hhhccCCCCCEEEccCCc-ceeec---CCCCCCccEEEccC-Cccccc-hhhcc
Q psy11652         87 LQTLDSLPKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNY-IKEFV---IPNRKHIEKLDLSN-NLISTI-NLNLN  158 (325)
Q Consensus        87 ~~~~~~l~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~-~~~~~---~~~~~~L~~L~l~~-~~~~~~-~~~~~  158 (325)
                      +..++.++++|+.|++++|.++.+  ..+.++++|++|++++|. ++.++   +..+++|++|++++ |.++.+ +..|.
T Consensus        23 l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~  102 (239)
T 2xwt_C           23 IQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK  102 (239)
T ss_dssp             CSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred             ccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence            444422566788888888887777  467788888888888886 77666   44678888888887 888877 56788


Q ss_pred             CCCCccEEEccCCcCcccccCccCCcccc---EEEcccC-CCcccChhhhhCccccCC-EEEccCCCCcCchHhhhCCCC
Q psy11652        159 NTYYIKDLILSYNQISKLNANTFRNLNVF---RLYLKFN-KISEIHDFAFNGLNSTLE-FLDLENNRLTNINQCFRNLKK  233 (325)
Q Consensus       159 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~---~L~l~~~-~l~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~  233 (325)
                      ++++|+.|++.+|.++.++. +...++|+   .|++++| .++.+++..|..++ +|+ .+++++|.+..+|......++
T Consensus       103 ~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~-~L~~~L~l~~n~l~~i~~~~~~~~~  180 (239)
T 2xwt_C          103 ELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC-NETLTLKLYNNGFTSVQGYAFNGTK  180 (239)
T ss_dssp             CCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB-SSEEEEECCSCCCCEECTTTTTTCE
T ss_pred             CCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchh-cceeEEEcCCCCCcccCHhhcCCCC
Confidence            88889999998888888775 44457776   8999998 88888877888888 898 999998888877764333478


Q ss_pred             CCEEeCCCCc-ccccccchhccC-ccCCEEEccCCCCcccCCCCCCCCCCEEECCCCc
Q psy11652        234 LKYLYLHNNN-IEFIQNNTFEHL-VNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNF  289 (325)
Q Consensus       234 L~~L~l~~~~-l~~~~~~~l~~~-~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~  289 (325)
                      |+.|++++|+ ++.+++..+.++ ++|+.|++++|.++.+|.. .+++|+.|+++++.
T Consensus       181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIARNTW  237 (239)
T ss_dssp             EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECTTC-
T ss_pred             CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeeccCcc
Confidence            8999999884 888877778888 8899999999988888763 56788888887753

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=9.6e-23  Score=172.93  Aligned_cols=220  Identities=20%  Similarity=0.336  Sum_probs=123.8

Q ss_pred             ccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccccCCccEEEeecC
Q psy11652         26 CILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANN  105 (325)
Q Consensus        26 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~L~~L~l~~~  105 (325)
                      +.++..+++..+.+.+...  . ..+ ++|+.|+++++.+..++.+..+++|++|++++|.+..+               
T Consensus        18 ~~~l~~l~l~~~~~~~~~~--~-~~l-~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~---------------   78 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDAVT--Q-NEL-NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI---------------   78 (272)
T ss_dssp             HHHHHHHHHTCSCTTSEEC--H-HHH-TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC---------------
T ss_pred             HHHHHHHHhcCcccccccc--c-ccc-cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc---------------
Confidence            3344455555554444333  1 223 56666666666555555555555555555555554443               


Q ss_pred             cccchhhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCcc
Q psy11652        106 YLVNYLELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTF  181 (325)
Q Consensus       106 ~l~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~  181 (325)
                           ..+..+++|++|++++|.++.++   +..+++|++|++++|.++.+ +..+..+++|+.|++++|.++.+++..+
T Consensus        79 -----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  153 (272)
T 3rfs_A           79 -----SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF  153 (272)
T ss_dssp             -----GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             -----hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh
Confidence                 34444555555555555555444   23455555555555555555 3445566666666666666665555443


Q ss_pred             C-CccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCC
Q psy11652        182 R-NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK  259 (325)
Q Consensus       182 ~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~  259 (325)
                      . .++|+.|++++|.+++.++..+..++ +|+.|++++|.+..++. .+..+++|+.|++++|.+..       .++.++
T Consensus       154 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~  225 (272)
T 3rfs_A          154 DKLTNLTELDLSYNQLQSLPEGVFDKLT-QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIR  225 (272)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTH
T ss_pred             ccCccCCEEECCCCCcCccCHHHhcCCc-cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHH
Confidence            3 36666666666666666555566666 67777777766665544 45666777777777765442       244566


Q ss_pred             EEEccCCCCc-ccCC-CCCC
Q psy11652        260 SISLSGNKLT-RIPD-FIHN  277 (325)
Q Consensus       260 ~L~l~~n~l~-~l~~-~~~~  277 (325)
                      .+++.+|.++ .+|. ++.+
T Consensus       226 ~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          226 YLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             HHHHHHHHTGGGBBCTTSCB
T ss_pred             HHHHHHHhCCCcccCccccc
Confidence            6666666666 4554 4433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=4.7e-21  Score=160.55  Aligned_cols=180  Identities=27%  Similarity=0.332  Sum_probs=156.9

Q ss_pred             CCCCEEEccCCcceeecCCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccC
Q psy11652        117 TSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFN  194 (325)
Q Consensus       117 ~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~  194 (325)
                      ...++++++++.++.+|....++++.|++++|.++.+ +..|.++++|+.|++++|.++.+++..+.. ++|+.|++++|
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   93 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN   93 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence            3467888999999988854557899999999999988 677899999999999999998877765544 99999999999


Q ss_pred             CCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC
Q psy11652        195 KISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD  273 (325)
Q Consensus       195 ~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~  273 (325)
                      .++..++..|..++ +|+.|++++|.+..++. .+..+++|++|++++|.++++++..+..+++|+.|++++|.++.+++
T Consensus        94 ~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A           94 QLASLPLGVFDHLT-QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             CCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cccccChhHhcccC-CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence            99998888888898 99999999999997776 56889999999999999999888788899999999999999998876


Q ss_pred             --CCCCCCCCEEECCCCcCccccccc
Q psy11652        274 --FIHNKRLSHLNLGYNFLNELILES  297 (325)
Q Consensus       274 --~~~~~~L~~L~l~~n~i~~~~~~~  297 (325)
                        +..+++|+.|++++|+++..+.+.
T Consensus       173 ~~~~~l~~L~~L~l~~N~~~c~~~~~  198 (251)
T 3m19_A          173 GAFDRLGKLQTITLFGNQFDCSRCEI  198 (251)
T ss_dssp             TTTTTCTTCCEEECCSCCBCTTSTTH
T ss_pred             HHHhCCCCCCEEEeeCCceeCCcccc
Confidence              888999999999999998764443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=9e-22  Score=170.14  Aligned_cols=213  Identities=16%  Similarity=0.079  Sum_probs=142.3

Q ss_pred             CccEEEccCCCCccc------ccc-cCCccEEEeecCcccch--hhh--ccCCCCCEEEccCCcceee-------cCCCC
Q psy11652         76 SILWLNMDSNLLQTL------DSL-PKTMETLSVANNYLVNY--LEL--NRMTSLKWIVLSNNYIKEF-------VIPNR  137 (325)
Q Consensus        76 ~L~~L~l~~~~~~~~------~~l-~~~L~~L~l~~~~l~~~--~~~--~~~~~L~~L~l~~~~~~~~-------~~~~~  137 (325)
                      .++.+.+.++.+...      ..+ .++|++|++++|.+...  ..+  ..+++|++|++++|.++..       ....+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            456666666555432      111 55677777777766655  333  6677777777777776631       13456


Q ss_pred             CCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcc---cccCc--cCCccccEEEcccCCCcccChh---hhhCcc
Q psy11652        138 KHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISK---LNANT--FRNLNVFRLYLKFNKISEIHDF---AFNGLN  208 (325)
Q Consensus       138 ~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~---~~~~~--~~~~~L~~L~l~~~~l~~~~~~---~~~~~~  208 (325)
                      ++|++|++++|.++.. +..++++++|+.|++++|.+..   ++...  ...++|++|++++|.++..+..   .+..++
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~  224 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV  224 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence            7777777777777766 5667777778888887776542   22222  2347788888888877654322   235556


Q ss_pred             ccCCEEEccCCCCcCc-hHhhhCC---CCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCCCCCCCCCCEEE
Q psy11652        209 STLEFLDLENNRLTNI-NQCFRNL---KKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLN  284 (325)
Q Consensus       209 ~~L~~L~l~~~~l~~~-~~~~~~~---~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~  284 (325)
                       +|++|++++|.+... |..+..+   ++|++|++++|.++.++... .  ++|+.|++++|+++.+|.+..+++|+.|+
T Consensus       225 -~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~  300 (310)
T 4glp_A          225 -QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-P--AKLRVLDLSSNRLNRAPQPDELPEVDNLT  300 (310)
T ss_dssp             -CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-C--SCCSCEECCSCCCCSCCCTTSCCCCSCEE
T ss_pred             -CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-c--CCCCEEECCCCcCCCCchhhhCCCccEEE
Confidence             888888888887755 5545554   58888888888888765532 2  68888888888888776677778888888


Q ss_pred             CCCCcCcc
Q psy11652        285 LGYNFLNE  292 (325)
Q Consensus       285 l~~n~i~~  292 (325)
                      +++|+++.
T Consensus       301 L~~N~l~~  308 (310)
T 4glp_A          301 LDGNPFLV  308 (310)
T ss_dssp             CSSTTTSC
T ss_pred             CcCCCCCC
Confidence            88888764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.86  E-value=8e-21  Score=166.97  Aligned_cols=231  Identities=19%  Similarity=0.258  Sum_probs=188.1

Q ss_pred             cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc---ccc--cCCc
Q psy11652         25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL---DSL--PKTM   97 (325)
Q Consensus        25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~---~~l--~~~L   97 (325)
                      .|.. +++++++++++++|. .+    ++++++|+|++|.++.+|  +|.++++|++|++++|.+...   ..|  ++++
T Consensus         8 ~C~~-~~v~C~~~~Lt~iP~-~l----~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l   81 (350)
T 4ay9_X            8 HCSN-RVFLCQESKVTEIPS-DL----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL   81 (350)
T ss_dssp             EEET-TEEEEESTTCCSCCT-TC----CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred             EeeC-CEEEecCCCCCccCc-Cc----CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhh
Confidence            4543 678999999999998 45    478999999999999998  799999999999999998654   455  6666


Q ss_pred             cE-EEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccC-Cccccc-hhhccCCC-CccEEEc
Q psy11652         98 ET-LSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSN-NLISTI-NLNLNNTY-YIKDLIL  168 (325)
Q Consensus        98 ~~-L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~-~~~~~~-~~~~~~~~-~L~~L~l  168 (325)
                      ++ +.+.+|.+..+  ..+..+++|++|++++|.+..++   .....++..+++.+ +.+..+ +..|..+. .++.|++
T Consensus        82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L  161 (350)
T 4ay9_X           82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL  161 (350)
T ss_dssp             CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred             hhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence            65 55667888887  67899999999999999999777   34556677888855 567777 55676664 6889999


Q ss_pred             cCCcCcccccCccCCccccEEEccc-CCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCC-cccc
Q psy11652        169 SYNQISKLNANTFRNLNVFRLYLKF-NKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNN-NIEF  246 (325)
Q Consensus       169 ~~~~l~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~-~l~~  246 (325)
                      ++|.++.++..++...+++.+++.+ |.++.+++..|..++ +|+.|++++|.++.+|.  ..+.+|+.|.+.++ .+..
T Consensus       162 ~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~-~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~~l~~  238 (350)
T 4ay9_X          162 NKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS-GPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLKK  238 (350)
T ss_dssp             CSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE-CCSEEECTTSCCCCCCS--SSCTTCCEEECTTCTTCCC
T ss_pred             ccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCc-ccchhhcCCCCcCccCh--hhhccchHhhhccCCCcCc
Confidence            9999999999998889999999975 788999888899998 99999999999999886  34567777776555 4555


Q ss_pred             cccchhccCccCCEEEccCC
Q psy11652        247 IQNNTFEHLVNLKSISLSGN  266 (325)
Q Consensus       247 ~~~~~l~~~~~L~~L~l~~n  266 (325)
                      ++.  +..+++|+.+++.++
T Consensus       239 lP~--l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          239 LPT--LEKLVALMEASLTYP  256 (350)
T ss_dssp             CCC--TTTCCSCCEEECSCH
T ss_pred             CCC--chhCcChhhCcCCCC
Confidence            553  778899999999763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=9e-21  Score=158.85  Aligned_cols=177  Identities=20%  Similarity=0.315  Sum_probs=124.4

Q ss_pred             cccchhhhhcc-cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--
Q psy11652         16 GPCSENVQISC-ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--   90 (325)
Q Consensus        16 ~~~~~~~~~~~-~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--   90 (325)
                      ..|+.|.++.| ...++++++++.++.+|. .+    .+.++.|++++|.+..++  .|.++++|++|++++|.+..+  
T Consensus         2 ~~Cp~~~gC~C~~~~~~l~~~~~~l~~~p~-~~----~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   76 (251)
T 3m19_A            2 KTCETVTGCTCNEGKKEVDCQGKSLDSVPS-GI----PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA   76 (251)
T ss_dssp             --CHHHHSSEEEGGGTEEECTTCCCSSCCS-CC----CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             ccCCCCCceEcCCCCeEEecCCCCccccCC-CC----CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence            36888888888 688999999999999998 45    378999999999999887  788999999999999988877  


Q ss_pred             ccc--cCCccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCC
Q psy11652         91 DSL--PKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYY  162 (325)
Q Consensus        91 ~~l--~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~  162 (325)
                      ..|  +++|+.|++++|.+..+  ..+..+++|++|++++|.++.++   +..+++|++|++++|.++.+ +..|..+++
T Consensus        77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  156 (251)
T 3m19_A           77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN  156 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence            334  67777777777777666  45566677777777777666555   23456666666666666655 334555666


Q ss_pred             ccEEEccCCcCcccccCccCC-ccccEEEcccCCCc
Q psy11652        163 IKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKIS  197 (325)
Q Consensus       163 L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l~  197 (325)
                      |+.|++.+|.++.+++..+.. ++|+.|++++|.+.
T Consensus       157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            666666666555555433322 55555555555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=5.8e-22  Score=175.05  Aligned_cols=211  Identities=20%  Similarity=0.156  Sum_probs=118.6

Q ss_pred             eEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc------cccCCC-CccEEEccCCCCccc--ccc--c-----
Q psy11652         31 SAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE------NLNGFR-SILWLNMDSNLLQTL--DSL--P-----   94 (325)
Q Consensus        31 ~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~-~L~~L~l~~~~~~~~--~~l--~-----   94 (325)
                      +++++++.++.... .+ ....++|++|++++|.+++.+      .+.+++ +|++|++++|.+...  ..+  .     
T Consensus         2 ~~~ls~n~~~~~~~-~~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~   79 (362)
T 3goz_A            2 NYKLTLHPGSNPVE-EF-TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP   79 (362)
T ss_dssp             EEECCCCTTCCHHH-HH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred             ccccccccchHHHH-HH-HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence            45677777775444 34 344356888888888887664      466677 788888888877765  233  2     


Q ss_pred             CCccEEEeecCcccch------hhhccC-CCCCEEEccCCcceeec-------CCC-CCCccEEEccCCccccc-----h
Q psy11652         95 KTMETLSVANNYLVNY------LELNRM-TSLKWIVLSNNYIKEFV-------IPN-RKHIEKLDLSNNLISTI-----N  154 (325)
Q Consensus        95 ~~L~~L~l~~~~l~~~------~~~~~~-~~L~~L~l~~~~~~~~~-------~~~-~~~L~~L~l~~~~~~~~-----~  154 (325)
                      ++|++|++++|.+...      ..+... ++|++|++++|.++..+       ... ..+|++|++++|.++..     +
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            7788888888877654      234444 67777777777776433       112 34677777777766532     3


Q ss_pred             hhccCCC-CccEEEccCCcCccccc-----CccCC-ccccEEEcccCCCcccChh----hhhCccccCCEEEccCCCCcC
Q psy11652        155 LNLNNTY-YIKDLILSYNQISKLNA-----NTFRN-LNVFRLYLKFNKISEIHDF----AFNGLNSTLEFLDLENNRLTN  223 (325)
Q Consensus       155 ~~~~~~~-~L~~L~l~~~~l~~~~~-----~~~~~-~~L~~L~l~~~~l~~~~~~----~~~~~~~~L~~L~l~~~~l~~  223 (325)
                      ..+...+ +|+.|++++|.++....     .+... ++|+.|++++|.++.....    .+...+++|+.|++++|.++.
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence            3344443 66666666666553332     11112 3555555555555542221    222211255555555555543


Q ss_pred             ch-----HhhhCCCCCCEEeCCCCc
Q psy11652        224 IN-----QCFRNLKKLKYLYLHNNN  243 (325)
Q Consensus       224 ~~-----~~~~~~~~L~~L~l~~~~  243 (325)
                      .+     ..+..+++|+.|++++|.
T Consensus       240 ~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          240 PSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             CCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             HHHHHHHHHHhcCCCccEEEeccCC
Confidence            21     123444555555555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=8.8e-23  Score=181.92  Aligned_cols=223  Identities=15%  Similarity=0.173  Sum_probs=114.7

Q ss_pred             cCccEEECCCCcccccc------cccCCCCccEEEccCCCCccc-c-----------cc--cCCccEEEeecCcccc---
Q psy11652         53 NKLTTLFIGENHIHQIE------NLNGFRSILWLNMDSNLLQTL-D-----------SL--PKTMETLSVANNYLVN---  109 (325)
Q Consensus        53 ~~L~~L~l~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~-~-----------~l--~~~L~~L~l~~~~l~~---  109 (325)
                      ++|++|++++|.++...      .+..+++|++|++++|.+..+ .           .+  +++|++|++++|.+..   
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            67788888877776532      466777888888877654433 1           11  4566666666665554   


Q ss_pred             --h-hhhccCCCCCEEEccCCcceeec-------CCCC---------CCccEEEccCCccccc--h---hhccCCCCccE
Q psy11652        110 --Y-LELNRMTSLKWIVLSNNYIKEFV-------IPNR---------KHIEKLDLSNNLISTI--N---LNLNNTYYIKD  165 (325)
Q Consensus       110 --~-~~~~~~~~L~~L~l~~~~~~~~~-------~~~~---------~~L~~L~l~~~~~~~~--~---~~~~~~~~L~~  165 (325)
                        + ..+..+++|++|++++|.++...       ...+         ++|++|++++|.++..  +   ..+..+++|+.
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence              1 34555666666666666554211       1111         4555555555555421  2   23444445555


Q ss_pred             EEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCC-----cCchHhhhCCCCCCEEeCC
Q psy11652        166 LILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRL-----TNINQCFRNLKKLKYLYLH  240 (325)
Q Consensus       166 L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l-----~~~~~~~~~~~~L~~L~l~  240 (325)
                      |++++|.++....                  ....+..+..++ +|+.|++++|.+     ..++..+..+++|++|+++
T Consensus       192 L~L~~n~l~~~g~------------------~~l~~~~l~~~~-~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~  252 (386)
T 2ca6_A          192 VKMVQNGIRPEGI------------------EHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  252 (386)
T ss_dssp             EECCSSCCCHHHH------------------HHHHHTTGGGCT-TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             EECcCCCCCHhHH------------------HHHHHHHhhcCC-CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence            5555554431000                  001111334444 555555555555     2344455555566666666


Q ss_pred             CCcccccc----cchh--ccCccCCEEEccCCCCcc-----cCC-C-CCCCCCCEEECCCCcCcccc
Q psy11652        241 NNNIEFIQ----NNTF--EHLVNLKSISLSGNKLTR-----IPD-F-IHNKRLSHLNLGYNFLNELI  294 (325)
Q Consensus       241 ~~~l~~~~----~~~l--~~~~~L~~L~l~~n~l~~-----l~~-~-~~~~~L~~L~l~~n~i~~~~  294 (325)
                      +|.++...    +..+  +.+++|+.|++++|.++.     +|. + .++++|+.|++++|+++...
T Consensus       253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            66555431    1122  125566666666666654     444 2 44566666666666666554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=7.4e-21  Score=167.96  Aligned_cols=216  Identities=19%  Similarity=0.177  Sum_probs=97.5

Q ss_pred             ccceEEcCCCceeeecC----CCcCccccc-CccEEECCCCcccccc--cccCC-----CCccEEEccCCCCccc--cc-
Q psy11652         28 LLMSAENEDNQIAELET----ANWSPEIQN-KLTTLFIGENHIHQIE--NLNGF-----RSILWLNMDSNLLQTL--DS-   92 (325)
Q Consensus        28 ~L~~L~l~~~~i~~~~~----~~~~~~~~~-~L~~L~l~~~~~~~~~--~~~~~-----~~L~~L~l~~~~~~~~--~~-   92 (325)
                      +|++|++++|.++..+.    ..+ ..+ + +|++|++++|.++...  .+..+     ++|++|++++|.+...  .. 
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l-~~~-~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAF-ANT-PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHH-HTC-CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHH-HhC-CCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            35555555555554443    223 333 3 5555555555555432  22221     5555555555555443  11 


Q ss_pred             ---c--c-CCccEEEeecCcccch--h----hhcc-CCCCCEEEccCCccee-----ec--CCCC-CCccEEEccCCccc
Q psy11652         93 ---L--P-KTMETLSVANNYLVNY--L----ELNR-MTSLKWIVLSNNYIKE-----FV--IPNR-KHIEKLDLSNNLIS  151 (325)
Q Consensus        93 ---l--~-~~L~~L~l~~~~l~~~--~----~~~~-~~~L~~L~l~~~~~~~-----~~--~~~~-~~L~~L~l~~~~~~  151 (325)
                         +  . ++|+.|++++|.+...  .    .+.. .++|++|++++|.++.     ++  .... ++|++|++++|.++
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence               1  1 4555555555555444  1    1222 2355555555555541     11  1122 25555555555554


Q ss_pred             cc-hh----hccCC-CCccEEEccCCcCcc-----cccCccCC-ccccEEEcccCCCcccChhh----hhCccccCCEEE
Q psy11652        152 TI-NL----NLNNT-YYIKDLILSYNQISK-----LNANTFRN-LNVFRLYLKFNKISEIHDFA----FNGLNSTLEFLD  215 (325)
Q Consensus       152 ~~-~~----~~~~~-~~L~~L~l~~~~l~~-----~~~~~~~~-~~L~~L~l~~~~l~~~~~~~----~~~~~~~L~~L~  215 (325)
                      .. +.    .+..+ ++|+.|++++|.++.     ++..+... ++|+.|++++|.++......    +..++ +|+.|+
T Consensus       181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~-~L~~L~  259 (362)
T 3goz_A          181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK-HLQTVY  259 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTT-TCSEEE
T ss_pred             hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCC-CccEEE
Confidence            43 21    22333 355555555555543     22222222 35555555555555443322    22334 555555


Q ss_pred             ccCCCCcC--------chHhhhCCCCCCEEeCCCCcccc
Q psy11652        216 LENNRLTN--------INQCFRNLKKLKYLYLHNNNIEF  246 (325)
Q Consensus       216 l~~~~l~~--------~~~~~~~~~~L~~L~l~~~~l~~  246 (325)
                      +++|.+..        ++..+..+++|+.|++++|.+..
T Consensus       260 L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             EEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             eccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            55554221        11233444445555555555443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.84  E-value=2.1e-20  Score=159.91  Aligned_cols=187  Identities=24%  Similarity=0.339  Sum_probs=130.7

Q ss_pred             cEEEccCCCCcccccc--cCCccEEEeecCcccchhhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCccccch
Q psy11652         78 LWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTIN  154 (325)
Q Consensus        78 ~~L~l~~~~~~~~~~l--~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~  154 (325)
                      ..+.+....+.+...+  +++|+.|++++|.+..+..+..+++|++|++++|.++.++ +..+++|++|++++|.++.++
T Consensus        27 ~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~  106 (291)
T 1h6t_A           27 IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS  106 (291)
T ss_dssp             HHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGG
T ss_pred             HHHHhcCCCcccccchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCCh
Confidence            3344555555444333  7778888888887777766777788888888888777666 667778888888887777664


Q ss_pred             hhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCC
Q psy11652        155 LNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKL  234 (325)
Q Consensus       155 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L  234 (325)
                      . +..+++|+.|++++|.++.++ .+..+++|+.|++++|.++..  ..+..++ +|+.|++++|.+..++. +..+++|
T Consensus       107 ~-l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~-~L~~L~L~~N~l~~~~~-l~~l~~L  180 (291)
T 1h6t_A          107 S-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLT-KLDTLSLEDNQISDIVP-LAGLTKL  180 (291)
T ss_dssp             G-GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCCCGG-GTTCTTC
T ss_pred             h-hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc--hhhccCC-CCCEEEccCCccccchh-hcCCCcc
Confidence            3 677777888888777777653 344457777777777777766  3566666 77777777777776655 6677777


Q ss_pred             CEEeCCCCcccccccchhccCccCCEEEccCCCCcccC
Q psy11652        235 KYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIP  272 (325)
Q Consensus       235 ~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~  272 (325)
                      +.|++++|.++.++.  +..+++|+.|++++|.++..|
T Consensus       181 ~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          181 QNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             CEEECCSSCCCBCGG--GTTCTTCSEEEEEEEEEECCC
T ss_pred             CEEECCCCcCCCChh--hccCCCCCEEECcCCcccCCc
Confidence            777777777776543  666777777777777766544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=2.9e-20  Score=163.35  Aligned_cols=226  Identities=21%  Similarity=0.291  Sum_probs=166.7

Q ss_pred             cEEECCCCcccccc-cccCCCCccEEEccCCCCccc--ccc--cCCccEEEeecCcccch---hhhccCCCCCE-EEccC
Q psy11652         56 TTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLSVANNYLVNY---LELNRMTSLKW-IVLSN  126 (325)
Q Consensus        56 ~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l~~~~l~~~---~~~~~~~~L~~-L~l~~  126 (325)
                      +.++.+++.++.+| .+  .+++++|++++|.++.+  ..|  +++|++|++++|.+...   ..+.+++++.+ +.+..
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            56777777888887 44  35788899999888888  456  78899999988876543   56778887765 55566


Q ss_pred             Ccceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccC-CcCcccccCccCC--ccccEEEcccCCCccc
Q psy11652        127 NYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSY-NQISKLNANTFRN--LNVFRLYLKFNKISEI  199 (325)
Q Consensus       127 ~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~--~~L~~L~l~~~~l~~~  199 (325)
                      |.++.++   +..+++|++|++++|.++.+ +..+....++..+++.+ +.+..++...+..  ..++.|++++|.++.+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i  169 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  169 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence            7888775   56788888899988888877 44555666777787765 4667776655544  5688888888888888


Q ss_pred             ChhhhhCccccCCEEEccC-CCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccC-CCCcccCCCCC
Q psy11652        200 HDFAFNGLNSTLEFLDLEN-NRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSG-NKLTRIPDFIH  276 (325)
Q Consensus       200 ~~~~~~~~~~~L~~L~l~~-~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~-n~l~~l~~~~~  276 (325)
                      ++..|.. . +++.+++.+ |.++.+|. .|..+++|+.|++++|+++.++...+.   .|+.|.+.+ +.+..+|.+..
T Consensus       170 ~~~~f~~-~-~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~l~~  244 (350)
T 4ay9_X          170 HNSAFNG-T-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPTLEK  244 (350)
T ss_dssp             CTTSSTT-E-EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCCTTT
T ss_pred             Chhhccc-c-chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCCchh
Confidence            7766644 4 788888874 67777775 678888899999998888888765444   555665544 45667777788


Q ss_pred             CCCCCEEECCCC
Q psy11652        277 NKRLSHLNLGYN  288 (325)
Q Consensus       277 ~~~L~~L~l~~n  288 (325)
                      +++|+.+++.++
T Consensus       245 l~~L~~l~l~~~  256 (350)
T 4ay9_X          245 LVALMEASLTYP  256 (350)
T ss_dssp             CCSCCEEECSCH
T ss_pred             CcChhhCcCCCC
Confidence            888888888763

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=3.2e-20  Score=160.41  Aligned_cols=218  Identities=18%  Similarity=0.087  Sum_probs=172.4

Q ss_pred             cCCccEEEeecCcccch-----hhhccCCCCCEEEccCCccee-ec--C--CCCCCccEEEccCCccccc-h----hhcc
Q psy11652         94 PKTMETLSVANNYLVNY-----LELNRMTSLKWIVLSNNYIKE-FV--I--PNRKHIEKLDLSNNLISTI-N----LNLN  158 (325)
Q Consensus        94 ~~~L~~L~l~~~~l~~~-----~~~~~~~~L~~L~l~~~~~~~-~~--~--~~~~~L~~L~l~~~~~~~~-~----~~~~  158 (325)
                      ...++.+.+.++.+...     ......++|++|++++|.+.. .|  +  ..+++|++|++++|.++.. +    ..+.
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            45678888888766543     234455779999999999884 44  3  6789999999999998863 2    4456


Q ss_pred             CCCCccEEEccCCcCcccccCccC-CccccEEEcccCCCccc---C-hhhhhCccccCCEEEccCCCCcCchH----hhh
Q psy11652        159 NTYYIKDLILSYNQISKLNANTFR-NLNVFRLYLKFNKISEI---H-DFAFNGLNSTLEFLDLENNRLTNINQ----CFR  229 (325)
Q Consensus       159 ~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~L~l~~~~l~~~---~-~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~  229 (325)
                      .+++|+.|++++|.+..+++..+. .++|++|++++|.+.+.   + ...+..++ +|++|++++|.++.++.    .+.
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~l~~  221 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP-AIQNLALRNTGMETPTGVCAALAA  221 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC-CCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC-CCCEEECCCCCCCchHHHHHHHHh
Confidence            799999999999999887765554 49999999999987642   1 12335777 99999999999987765    357


Q ss_pred             CCCCCCEEeCCCCcccccccchhccC---ccCCEEEccCCCCcccCC-CCCCCCCCEEECCCCcCcccccccccchhhhc
Q psy11652        230 NLKKLKYLYLHNNNIEFIQNNTFEHL---VNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELILESSIVENEII  305 (325)
Q Consensus       230 ~~~~L~~L~l~~~~l~~~~~~~l~~~---~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~  305 (325)
                      .+++|++|++++|.+++..+..+..+   ++|+.|++++|.++.+|. +.  ++|++|++++|++++++.-  ....++.
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~--~~l~~L~  297 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQP--DELPEVD  297 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCT--TSCCCCS
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchh--hhCCCcc
Confidence            88999999999999998755455555   699999999999999987 53  8999999999999998652  3335566


Q ss_pred             cccccccccee
Q psy11652        306 DQNMLFNSNAV  316 (325)
Q Consensus       306 ~~~~~~~~~~~  316 (325)
                      .+++..|++..
T Consensus       298 ~L~L~~N~l~~  308 (310)
T 4glp_A          298 NLTLDGNPFLV  308 (310)
T ss_dssp             CEECSSTTTSC
T ss_pred             EEECcCCCCCC
Confidence            78888888754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=9e-21  Score=165.64  Aligned_cols=197  Identities=15%  Similarity=0.140  Sum_probs=104.0

Q ss_pred             cchhhhhcc--cccceEEcCCCceeeecCCCcCccc-ccCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc---
Q psy11652         18 CSENVQISC--ILLMSAENEDNQIAELETANWSPEI-QNKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL---   90 (325)
Q Consensus        18 ~~~~~~~~~--~~L~~L~l~~~~i~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~---   90 (325)
                      |..|..+.+  ..++.++++++.+.  +. .+ ..+ .++++.|+++++.+...+ .+..+++|++|++++|.+...   
T Consensus        36 c~~W~~~~~~~~~~~~l~l~~~~~~--~~-~~-~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~  111 (336)
T 2ast_B           36 CKRWYRLASDESLWQTLDLTGKNLH--PD-VT-GRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH  111 (336)
T ss_dssp             CHHHHHHHTCSTTSSEEECTTCBCC--HH-HH-HHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHH
T ss_pred             HHHHHHHhcCchhheeeccccccCC--HH-HH-HhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHH
Confidence            444544432  24777777777665  22 22 222 267777777777776655 555677777777777765432   


Q ss_pred             ccc--cCCccEEEeecCcccch--hhhccCCCCCEEEccCC-ccee--ec--CCCCCCccEEEccCC-ccccc--hhhcc
Q psy11652         91 DSL--PKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNN-YIKE--FV--IPNRKHIEKLDLSNN-LISTI--NLNLN  158 (325)
Q Consensus        91 ~~l--~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~-~~~~--~~--~~~~~~L~~L~l~~~-~~~~~--~~~~~  158 (325)
                      ..+  +++|++|++++|.+...  ..+..+++|++|++++| .++.  ++  ...+++|++|++++| .++..  +..+.
T Consensus       112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  191 (336)
T 2ast_B          112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA  191 (336)
T ss_dssp             HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred             HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence            222  56666666666665543  45555666666666666 4442  33  334555666666655 55432  44455


Q ss_pred             CCC-CccEEEccCCc--Cc--ccccCccCCccccEEEcccCC-CcccChhhhhCccccCCEEEccCC
Q psy11652        159 NTY-YIKDLILSYNQ--IS--KLNANTFRNLNVFRLYLKFNK-ISEIHDFAFNGLNSTLEFLDLENN  219 (325)
Q Consensus       159 ~~~-~L~~L~l~~~~--l~--~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~~  219 (325)
                      .++ +|+.|++++|.  ++  .++..+..+++|+.|++++|. +++..+..+..++ +|+.|++++|
T Consensus       192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~-~L~~L~l~~~  257 (336)
T 2ast_B          192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN-YLQHLSLSRC  257 (336)
T ss_dssp             HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT-TCCEEECTTC
T ss_pred             hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC-CCCEeeCCCC
Confidence            555 55555555552  22  222222223445555555444 3333333444444 4444444444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=1.1e-20  Score=165.04  Aligned_cols=242  Identities=15%  Similarity=0.159  Sum_probs=179.6

Q ss_pred             CccEEECCCCcccccccccCC--CCccEEEccCCCCccc-ccc--cCCccEEEeecCcccch---hhhccCCCCCEEEcc
Q psy11652         54 KLTTLFIGENHIHQIENLNGF--RSILWLNMDSNLLQTL-DSL--PKTMETLSVANNYLVNY---LELNRMTSLKWIVLS  125 (325)
Q Consensus        54 ~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~-~~l--~~~L~~L~l~~~~l~~~---~~~~~~~~L~~L~l~  125 (325)
                      .++.++++++.+... .+..+  ++++.++++++.+... ..+  +++|++|++++|.+...   ..+..+++|++|+++
T Consensus        48 ~~~~l~l~~~~~~~~-~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~  126 (336)
T 2ast_B           48 LWQTLDLTGKNLHPD-VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE  126 (336)
T ss_dssp             TSSEEECTTCBCCHH-HHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             hheeeccccccCCHH-HHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence            488899998877631 44555  7899999999988777 334  89999999999987653   677888999999999


Q ss_pred             CCcce-eec--CCCCCCccEEEccCC-cccc--chhhccCCCCccEEEccCC-cCcc--cccCccCCc-cccEEEcccC-
Q psy11652        126 NNYIK-EFV--IPNRKHIEKLDLSNN-LIST--INLNLNNTYYIKDLILSYN-QISK--LNANTFRNL-NVFRLYLKFN-  194 (325)
Q Consensus       126 ~~~~~-~~~--~~~~~~L~~L~l~~~-~~~~--~~~~~~~~~~L~~L~l~~~-~l~~--~~~~~~~~~-~L~~L~l~~~-  194 (325)
                      +|.++ ..+  +..+++|++|++++| .++.  ++..+.++++|+.|++++| .++.  ++..+...+ +|++|++++| 
T Consensus       127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence            99887 333  567899999999998 6775  3666888999999999999 7774  444455567 9999999998 


Q ss_pred             -CCc-ccChhhhhCccccCCEEEccCCC-Cc-CchHhhhCCCCCCEEeCCCCc-ccccccchhccCccCCEEEccCCCCc
Q psy11652        195 -KIS-EIHDFAFNGLNSTLEFLDLENNR-LT-NINQCFRNLKKLKYLYLHNNN-IEFIQNNTFEHLVNLKSISLSGNKLT  269 (325)
Q Consensus       195 -~l~-~~~~~~~~~~~~~L~~L~l~~~~-l~-~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~~n~l~  269 (325)
                       .++ ...+..+..++ +|+.|++++|. ++ ..+..+..+++|++|++++|. +.......+..+++|+.|++++| ++
T Consensus       207 ~~~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~  284 (336)
T 2ast_B          207 KNLQKSDLSTLVRRCP-NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP  284 (336)
T ss_dssp             GGSCHHHHHHHHHHCT-TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred             ccCCHHHHHHHHhhCC-CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence             454 22344566777 99999999988 55 555678888999999999984 33332235777899999999988 33


Q ss_pred             ccCCCCCC-CCCCEEECCCCcCccccccccc
Q psy11652        270 RIPDFIHN-KRLSHLNLGYNFLNELILESSI  299 (325)
Q Consensus       270 ~l~~~~~~-~~L~~L~l~~n~i~~~~~~~~~  299 (325)
                      .- .+..+ .+++.|++++|.++++.+....
T Consensus       285 ~~-~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          285 DG-TLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             TT-CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             HH-HHHHHHhhCcceEEecccCccccCCccc
Confidence            11 02222 2466677899999888776544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=9.3e-21  Score=168.81  Aligned_cols=222  Identities=18%  Similarity=0.128  Sum_probs=164.6

Q ss_pred             hcccccceEEcCCCceeeecCC----CcCcccccCccEEECCCCccccc----c--------cccCCCCccEEEccCCCC
Q psy11652         24 ISCILLMSAENEDNQIAELETA----NWSPEIQNKLTTLFIGENHIHQI----E--------NLNGFRSILWLNMDSNLL   87 (325)
Q Consensus        24 ~~~~~L~~L~l~~~~i~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~--------~~~~~~~L~~L~l~~~~~   87 (325)
                      ..+++|++|++++|.++.....    .+ ..+ ++|++|++++|.+..+    |        .+..+++|++|++++|.+
T Consensus        29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~-~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           29 LEDDSVKEIVLSGNTIGTEAARWLSENI-ASK-KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTT-TTC-TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             hcCCCccEEECCCCCCCHHHHHHHHHHH-HhC-CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence            4788999999999999864332    24 455 8999999999765532    3        357899999999999998


Q ss_pred             ccc------ccc--cCCccEEEeecCcccch------hhhccC---------CCCCEEEccCCcce--eec-----CCCC
Q psy11652         88 QTL------DSL--PKTMETLSVANNYLVNY------LELNRM---------TSLKWIVLSNNYIK--EFV-----IPNR  137 (325)
Q Consensus        88 ~~~------~~l--~~~L~~L~l~~~~l~~~------~~~~~~---------~~L~~L~l~~~~~~--~~~-----~~~~  137 (325)
                      ...      ..+  +++|++|++++|.+...      ..+..+         ++|++|++++|.++  .++     +..+
T Consensus       107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  186 (386)
T 2ca6_A          107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  186 (386)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence            873      344  89999999999988644      234444         89999999999986  333     3367


Q ss_pred             CCccEEEccCCcccc-----c-hhhccCCCCccEEEccCCcCc-----ccccCccCCccccEEEcccCCCcccC----hh
Q psy11652        138 KHIEKLDLSNNLIST-----I-NLNLNNTYYIKDLILSYNQIS-----KLNANTFRNLNVFRLYLKFNKISEIH----DF  202 (325)
Q Consensus       138 ~~L~~L~l~~~~~~~-----~-~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~l~~~~----~~  202 (325)
                      ++|++|++++|.++.     + +..+..+++|+.|++++|.++     .++..+...++|+.|++++|.++...    +.
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  266 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD  266 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence            899999999999872     2 447888999999999999884     34544445577888888888877542    23


Q ss_pred             hhhC--ccccCCEEEccCCCCcC-----chHhh-hCCCCCCEEeCCCCcccccc
Q psy11652        203 AFNG--LNSTLEFLDLENNRLTN-----INQCF-RNLKKLKYLYLHNNNIEFIQ  248 (325)
Q Consensus       203 ~~~~--~~~~L~~L~l~~~~l~~-----~~~~~-~~~~~L~~L~l~~~~l~~~~  248 (325)
                      .+..  ++ +|+.|++++|.++.     +|..+ ..+++|++|++++|.+++..
T Consensus       267 ~l~~~~~~-~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          267 AFSKLENI-GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHTCSSC-CCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHhhccCC-CeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            3322  55 77777777777775     66555 45677777777777776544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.82  E-value=7.6e-20  Score=156.51  Aligned_cols=192  Identities=21%  Similarity=0.277  Sum_probs=107.4

Q ss_pred             cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEEe
Q psy11652         25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSV  102 (325)
Q Consensus        25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l  102 (325)
                      .+.++..+.+....++++..  + ..+ ++|++|++++|.+..++.+..+++|++|++++|.+..+..+  +++|+.|++
T Consensus        22 ~l~~~~~~~l~~~~~~~~~~--~-~~l-~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l   97 (291)
T 1h6t_A           22 AFAETIKDNLKKKSVTDAVT--Q-NEL-NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFL   97 (291)
T ss_dssp             HHHHHHHHHTTCSCTTSEEC--H-HHH-HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             HHHHHHHHHhcCCCcccccc--h-hhc-CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEEC
Confidence            44455555566666655444  2 333 67777777777777666666667777777776666655324  556666666


Q ss_pred             ecCcccchhhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccC
Q psy11652        103 ANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFR  182 (325)
Q Consensus       103 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  182 (325)
                      ++|.+..+..+..+++|++|++++|.++.++                      .+..+++|+.|++++|.++.+ ..+..
T Consensus        98 ~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~----------------------~l~~l~~L~~L~l~~n~l~~~-~~l~~  154 (291)
T 1h6t_A           98 DENKVKDLSSLKDLKKLKSLSLEHNGISDIN----------------------GLVHLPQLESLYLGNNKITDI-TVLSR  154 (291)
T ss_dssp             CSSCCCCGGGGTTCTTCCEEECTTSCCCCCG----------------------GGGGCTTCCEEECCSSCCCCC-GGGGG
T ss_pred             CCCcCCCChhhccCCCCCEEECCCCcCCCCh----------------------hhcCCCCCCEEEccCCcCCcc-hhhcc
Confidence            6655555544555555555555555555444                      234444455555555544444 22333


Q ss_pred             CccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCccccc
Q psy11652        183 NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFI  247 (325)
Q Consensus       183 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~  247 (325)
                      +++|+.|++++|.+++.++  +..++ +|+.|++++|.++.++. +..+++|+.|++++|.++..
T Consensus       155 l~~L~~L~L~~N~l~~~~~--l~~l~-~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          155 LTKLDTLSLEDNQISDIVP--LAGLT-KLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCT-TCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECC
T ss_pred             CCCCCEEEccCCccccchh--hcCCC-ccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCC
Confidence            3555555555555555433  44555 66666666666655543 55666666666666665543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.80  E-value=7.9e-20  Score=170.92  Aligned_cols=189  Identities=24%  Similarity=0.343  Sum_probs=124.4

Q ss_pred             CccEEEccCCCCcccccc--cCCccEEEeecCcccchhhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCcccc
Q psy11652         76 SILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLIST  152 (325)
Q Consensus        76 ~L~~L~l~~~~~~~~~~l--~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~  152 (325)
                      ++..+.+..+.+.++..+  +++|+.|++++|.+..+..+..+++|+.|++++|.+..++ +..+++|+.|++++|.++.
T Consensus        22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~  101 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD  101 (605)
T ss_dssp             HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             HHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC
Confidence            344445555555554333  6777777777777766666777777777777777777666 5667777777777777766


Q ss_pred             chhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCC
Q psy11652        153 INLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLK  232 (325)
Q Consensus       153 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  232 (325)
                      ++ .+..+++|+.|++++|.+..++ .+..+++|+.|++++|.++.+  ..+..++ +|+.|++++|.+..++. +..++
T Consensus       102 l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~-~L~~L~Ls~N~l~~~~~-l~~l~  175 (605)
T 1m9s_A          102 LS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLT-KLDTLSLEDNQISDIVP-LAGLT  175 (605)
T ss_dssp             CT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCT-TCSEEECCSSCCCCCGG-GTTCT
T ss_pred             Ch-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc--hhhcccC-CCCEEECcCCcCCCchh-hccCC
Confidence            54 4666777777777777766653 244456777777777776665  3566666 77777777777665554 66667


Q ss_pred             CCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccC
Q psy11652        233 KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIP  272 (325)
Q Consensus       233 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~  272 (325)
                      +|+.|++++|.+++++  .+..+++|+.|++++|.+...|
T Consensus       176 ~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          176 KLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             TCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCC
T ss_pred             CCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCc
Confidence            7777777777666653  3566667777777777666444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=4.5e-19  Score=164.20  Aligned_cols=179  Identities=19%  Similarity=0.229  Sum_probs=88.8

Q ss_pred             CccEEEccCCCCccc-ccccCCccEEEeecCcccchhhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccch
Q psy11652         76 SILWLNMDSNLLQTL-DSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTIN  154 (325)
Q Consensus        76 ~L~~L~l~~~~~~~~-~~l~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  154 (325)
                      +++.|++++|.+..+ ..++++|+.|++++|.++.++  ..+++|++|++++|.++.+|. ...+|++|++++|.++.+|
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N~l~~lp  136 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPASLKHLDVDNNQLTMLP  136 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCC
T ss_pred             CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhcCCCEEECCCCcCCCCC
Confidence            566666666666555 333555666666655555443  344555555555555554442 1125555555555554443


Q ss_pred             hhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCC
Q psy11652        155 LNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKL  234 (325)
Q Consensus       155 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L  234 (325)
                      .   .+++|+.|++++|.++.++.   ..++|+.|++++|.+                         +.+|. +.  ++|
T Consensus       137 ~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L-------------------------~~lp~-l~--~~L  182 (571)
T 3cvr_A          137 E---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQL-------------------------TFLPE-LP--ESL  182 (571)
T ss_dssp             C---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC-------------------------SCCCC-CC--TTC
T ss_pred             C---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCC-------------------------CCcch-hh--CCC
Confidence            3   34445555555554444433   224444444444444                         44443 22  445


Q ss_pred             CEEeCCCCcccccccchhccCccC-------CEEEccCCCCcccCC-CCCCCCCCEEECCCCcCccccc
Q psy11652        235 KYLYLHNNNIEFIQNNTFEHLVNL-------KSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELIL  295 (325)
Q Consensus       235 ~~L~l~~~~l~~~~~~~l~~~~~L-------~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~  295 (325)
                      +.|++++|.++.++.  +..  +|       +.|++++|.++.+|. +..+++|+.|++++|++++..+
T Consensus       183 ~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          183 EALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             CEEECCSSCCSSCCC--CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             CEEECcCCCCCchhh--HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence            555555554444333  221  33       555555555555555 4445556666666665555433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=1.9e-18  Score=160.07  Aligned_cols=195  Identities=22%  Similarity=0.222  Sum_probs=116.7

Q ss_pred             ccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccccCCccEEEeecC
Q psy11652         26 CILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANN  105 (325)
Q Consensus        26 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~L~~L~l~~~  105 (325)
                      +.++++|+++++.++.+|. .+    +++|++|++++|.++.+|  ..+++|++|++++|.+..++.+..+|+.|++++|
T Consensus        58 ~~~L~~L~Ls~n~L~~lp~-~l----~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N  130 (571)
T 3cvr_A           58 INQFSELQLNRLNLSSLPD-NL----PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPELPASLKHLDVDNN  130 (571)
T ss_dssp             HTTCSEEECCSSCCSCCCS-CC----CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred             cCCccEEEeCCCCCCccCH-hH----cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcchhhcCCCEEECCCC
Confidence            4478888888888888777 33    267888888888888777  5567788888888877766335447777777777


Q ss_pred             cccchhhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCcc
Q psy11652        106 YLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLN  185 (325)
Q Consensus       106 ~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~  185 (325)
                      .++.++.  .+++|+.|++++|.++.+|. .+++|++|++++|.++.+|. +.  ++|+.|++++|.++.++. +..  +
T Consensus       131 ~l~~lp~--~l~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~  201 (571)
T 3cvr_A          131 QLTMLPE--LPALLEYINADNNQLTMLPE-LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--R  201 (571)
T ss_dssp             CCSCCCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC----
T ss_pred             cCCCCCC--cCccccEEeCCCCccCcCCC-cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH--h
Confidence            6666533  45666666666666665554 44566666666666555543 33  555566665555555444 211  3


Q ss_pred             ccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhcc
Q psy11652        186 VFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEH  254 (325)
Q Consensus       186 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~  254 (325)
                      |                 +...+ .++.|++++|.++.+|..+..+++|+.|++++|.+++..+..+..
T Consensus       202 L-----------------~~~~~-~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          202 N-----------------HHSEE-TEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             ------------------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             h-----------------hcccc-cceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            3                 00011 225566666655555555555566666666666655544434433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.79  E-value=2.9e-19  Score=167.05  Aligned_cols=190  Identities=23%  Similarity=0.300  Sum_probs=110.8

Q ss_pred             hcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEE
Q psy11652         24 ISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLS  101 (325)
Q Consensus        24 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~  101 (325)
                      ..+..+..+.+..+.+.++..  + ..+ ++|+.|++++|.+..++.+..+++|+.|++++|.+..+..+  +++|+.|+
T Consensus        18 ~~l~~l~~l~l~~~~i~~~~~--~-~~L-~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~   93 (605)
T 1m9s_A           18 DAFAETIKDNLKKKSVTDAVT--Q-NEL-NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLF   93 (605)
T ss_dssp             HHHHHHHHHHTTCSCTTSEEC--H-HHH-TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEE
T ss_pred             HHHHHHHHHhccCCCcccccc--h-hcC-CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEE
Confidence            355566667777777766555  2 334 78888888888887777777778888888887777666335  66666666


Q ss_pred             eecCcccchhhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCc
Q psy11652        102 VANNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANT  180 (325)
Q Consensus       102 l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  180 (325)
                      +++|.+..+..+..+++|+.|++++|.+..++ +..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+..+++ +
T Consensus        94 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l  171 (605)
T 1m9s_A           94 LDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-L  171 (605)
T ss_dssp             CCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-G
T ss_pred             CcCCCCCCChhhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-h
Confidence            66666665555566666666666666655554 44455555555555555544 334455555555555555544433 3


Q ss_pred             cCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCc
Q psy11652        181 FRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT  222 (325)
Q Consensus       181 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~  222 (325)
                      ..+++|+.|++++|.+++++  .+..++ +|+.|++++|.+.
T Consensus       172 ~~l~~L~~L~Ls~N~i~~l~--~l~~l~-~L~~L~L~~N~l~  210 (605)
T 1m9s_A          172 AGLTKLQNLYLSKNHISDLR--ALAGLK-NLDVLELFSQECL  210 (605)
T ss_dssp             TTCTTCCEEECCSSCCCBCG--GGTTCT-TCSEEECCSEEEE
T ss_pred             ccCCCCCEEECcCCCCCCCh--HHccCC-CCCEEEccCCcCc
Confidence            33344444444444444431  234444 4444444444433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.79  E-value=5.3e-20  Score=172.81  Aligned_cols=66  Identities=15%  Similarity=0.176  Sum_probs=42.8

Q ss_pred             hcccccceEEcCCCceeeecCC---CcCcccccCccEEECCCCccccc-----c-cccCCCCccEEEccCCCCccc
Q psy11652         24 ISCILLMSAENEDNQIAELETA---NWSPEIQNKLTTLFIGENHIHQI-----E-NLNGFRSILWLNMDSNLLQTL   90 (325)
Q Consensus        24 ~~~~~L~~L~l~~~~i~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~-----~-~~~~~~~L~~L~l~~~~~~~~   90 (325)
                      ..|++|++|++++|.+++....   .+ ...++.|++|+++++.++.+     + .+.++++|++|++++|.+..+
T Consensus       161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l  235 (592)
T 3ogk_B          161 THCRKIKTLLMEESSFSEKDGKWLHEL-AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL  235 (592)
T ss_dssp             HHCTTCSEEECTTCEEECCCSHHHHHH-HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG
T ss_pred             hhCCCCCEEECccccccCcchhHHHHH-HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH
Confidence            3788999999998887654321   12 12237788888887776522     2 455677788888877765443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=1.4e-18  Score=141.29  Aligned_cols=170  Identities=21%  Similarity=0.241  Sum_probs=123.9

Q ss_pred             CEEEccCCcceeecCCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCccC-CccccEEEcccCCCc
Q psy11652        120 KWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFR-NLNVFRLYLKFNKIS  197 (325)
Q Consensus       120 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~L~l~~~~l~  197 (325)
                      +.++.+++.++.+|....+++++|++++|.++.+ +..|..+++|+.|++.+|.++.++...+. .++|++|++++|.++
T Consensus        10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~   89 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ   89 (208)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence            4566666777777755566788888888887777 55577788888888888877777666544 378888888888887


Q ss_pred             ccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCCCCC
Q psy11652        198 EIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIH  276 (325)
Q Consensus       198 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~  276 (325)
                      ..++..+..++ +|+.|++++|.+..++. .+..+++|++|++++|.++++++..+..+++|+.|++++|.+.     ..
T Consensus        90 ~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-----~~  163 (208)
T 2o6s_A           90 SLPNGVFDKLT-QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-----CT  163 (208)
T ss_dssp             CCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----CC
T ss_pred             ccCHhHhcCcc-CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----cC
Confidence            77766677777 88888888887776655 4677778888888888877777766777778888888877655     24


Q ss_pred             CCCCCEEECCCCcCccccc
Q psy11652        277 NKRLSHLNLGYNFLNELIL  295 (325)
Q Consensus       277 ~~~L~~L~l~~n~i~~~~~  295 (325)
                      +++|+.|+++.|.+++..+
T Consensus       164 ~~~l~~L~~~~n~~~g~ip  182 (208)
T 2o6s_A          164 CPGIRYLSEWINKHSGVVR  182 (208)
T ss_dssp             TTTTHHHHHHHHHCTTTBB
T ss_pred             CCCHHHHHHHHHhCCceee
Confidence            5677777777777775444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=2e-18  Score=152.23  Aligned_cols=172  Identities=26%  Similarity=0.319  Sum_probs=112.9

Q ss_pred             CEEEccCCcceeecCCCCCCccEEEccCCccccc-hhhcc-CCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCC
Q psy11652        120 KWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNLN-NTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKI  196 (325)
Q Consensus       120 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l  196 (325)
                      +.++++++.++.+|......++.|++++|.++.+ +..+. ++++|+.|++++|.++.+++..+.. ++|+.|++++|.+
T Consensus        21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l  100 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL  100 (361)
T ss_dssp             TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence            4566666666666643445566777777777666 44455 6677777777777776666543333 6777777777777


Q ss_pred             cccChhhhhCccccCCEEEccCCCCcCch-HhhhCCCCCCEEeCCCCcccccccchh---ccCccCCEEEccCCCCcccC
Q psy11652        197 SEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFIQNNTF---EHLVNLKSISLSGNKLTRIP  272 (325)
Q Consensus       197 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~l---~~~~~L~~L~l~~n~l~~l~  272 (325)
                      +.+++..|..++ +|+.|++++|.+..++ ..|..+++|+.|++++|.++.++...+   ..+++|+.|++++|.++.+|
T Consensus       101 ~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          101 HTLDEFLFSDLQ-ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             CEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred             CcCCHHHhCCCc-CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence            766666666676 7777777777776553 366677777777777777777666555   44677777777777777666


Q ss_pred             C--CCCCCC--CCEEECCCCcCcc
Q psy11652        273 D--FIHNKR--LSHLNLGYNFLNE  292 (325)
Q Consensus       273 ~--~~~~~~--L~~L~l~~n~i~~  292 (325)
                      .  +..++.  ++.|++++|++..
T Consensus       180 ~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          180 LTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             HHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             HHHhhhccHhhcceEEecCCCccC
Confidence            4  555555  3667777777653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=6e-18  Score=138.66  Aligned_cols=149  Identities=30%  Similarity=0.396  Sum_probs=94.9

Q ss_pred             cEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCCcccChhhhhCccccCCEEEccCC
Q psy11652        141 EKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENN  219 (325)
Q Consensus       141 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~  219 (325)
                      +.++++++.++.+|..+.  ++++.|++.+|.++.+++..+.. ++|+.|++++|.++.+.+..|.+++ +|+.|++++|
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-SCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-CCCEEECCCC
Confidence            345555555555543332  45666666666666555533333 6666666666666666666666666 6777777777


Q ss_pred             CCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcc
Q psy11652        220 RLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNE  292 (325)
Q Consensus       220 ~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~  292 (325)
                      .+..+|. .|..+++|++|++++|.++++++..+..+++|+.|++++|.++.++.  +..+++|+.|++++|++..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            6666655 35666777777777777776666666667777777777777776665  6667777777777777654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.76  E-value=6.7e-19  Score=165.31  Aligned_cols=270  Identities=11%  Similarity=0.034  Sum_probs=165.7

Q ss_pred             hhcccccceEEcCCCceeeecCCCc---CcccccCccEEECCCCcccccc-cccCCCCccEEEccCC-------------
Q psy11652         23 QISCILLMSAENEDNQIAELETANW---SPEIQNKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSN-------------   85 (325)
Q Consensus        23 ~~~~~~L~~L~l~~~~i~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~-------------   85 (325)
                      ...+++|++|+++++.++.+....+   ...+ ++|++|++++|.+..++ .+.++++|++|+++..             
T Consensus       188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  266 (592)
T 3ogk_B          188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNC-RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL  266 (592)
T ss_dssp             HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC-TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred             HhcCCCccEEEeeccCCCccCHHHHHHHHhhC-CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence            3477888888888887763322111   0233 78888888888777766 5566666666666532             


Q ss_pred             --------------CCcccccc---cCCccEEEeecCcccch---hhhccCCCCCEEEccCCcce--eec--CCCCCCcc
Q psy11652         86 --------------LLQTLDSL---PKTMETLSVANNYLVNY---LELNRMTSLKWIVLSNNYIK--EFV--IPNRKHIE  141 (325)
Q Consensus        86 --------------~~~~~~~l---~~~L~~L~l~~~~l~~~---~~~~~~~~L~~L~l~~~~~~--~~~--~~~~~~L~  141 (325)
                                    ....+..+   +++|++|++++|.+...   ..+.++++|++|+++ +.+.  .++  ...+++|+
T Consensus       267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~  345 (592)
T 3ogk_B          267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLK  345 (592)
T ss_dssp             CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCC
T ss_pred             hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCC
Confidence                          11112111   56777777777764433   335667777777776 3332  222  23566777


Q ss_pred             EEEccC-----------Cccccc--hhhccCCCCccEEEccCCcCcccc-cCccC-CccccEEEcc----cCCCcccC--
Q psy11652        142 KLDLSN-----------NLISTI--NLNLNNTYYIKDLILSYNQISKLN-ANTFR-NLNVFRLYLK----FNKISEIH--  200 (325)
Q Consensus       142 ~L~l~~-----------~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~-~~~L~~L~l~----~~~l~~~~--  200 (325)
                      +|++++           +.++..  ...+.++++|+.|++..+.++... ..+.. +++|+.|+++    .+.+++.+  
T Consensus       346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~  425 (592)
T 3ogk_B          346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD  425 (592)
T ss_dssp             EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred             EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence            777773           344433  333455777888877666665321 12222 4678888885    44555432  


Q ss_pred             ---hhhhhCccccCCEEEccCCC--Cc-CchH-hhhCCCCCCEEeCCCCccccc-ccchhccCccCCEEEccCCCCc--c
Q psy11652        201 ---DFAFNGLNSTLEFLDLENNR--LT-NINQ-CFRNLKKLKYLYLHNNNIEFI-QNNTFEHLVNLKSISLSGNKLT--R  270 (325)
Q Consensus       201 ---~~~~~~~~~~L~~L~l~~~~--l~-~~~~-~~~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~n~l~--~  270 (325)
                         +..+.+++ +|+.|+++++.  ++ .... ....+++|++|++++|.+++. .+..+.++++|+.|++++|.++  .
T Consensus       426 ~~~~~~~~~~~-~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  504 (592)
T 3ogk_B          426 NGVRSLLIGCK-KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA  504 (592)
T ss_dssp             HHHHHHHHHCT-TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHH
T ss_pred             HHHHHHHHhCC-CCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHH
Confidence               12244566 88888886532  44 2222 334578888888888887752 2334567788999999998876  2


Q ss_pred             cCC-CCCCCCCCEEECCCCcCccccc
Q psy11652        271 IPD-FIHNKRLSHLNLGYNFLNELIL  295 (325)
Q Consensus       271 l~~-~~~~~~L~~L~l~~n~i~~~~~  295 (325)
                      ++. ...+++|+.|++++|+++....
T Consensus       505 ~~~~~~~l~~L~~L~ls~n~it~~~~  530 (592)
T 3ogk_B          505 IAAAVTKLPSLRYLWVQGYRASMTGQ  530 (592)
T ss_dssp             HHHHHHHCSSCCEEEEESCBCCTTCT
T ss_pred             HHHHHHhcCccCeeECcCCcCCHHHH
Confidence            344 5567889999999998876543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=1.5e-17  Score=137.16  Aligned_cols=148  Identities=22%  Similarity=0.260  Sum_probs=67.8

Q ss_pred             CEEEccCCcceeecCCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCCc
Q psy11652        120 KWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKIS  197 (325)
Q Consensus       120 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l~  197 (325)
                      +.++.+++.++.+|....++|++|++++|.++.+ +..|.++++|+.|++++|.+..++...+.. ++|+.|++++|.++
T Consensus        22 ~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~  101 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT  101 (229)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC
Confidence            3444444445554533334555555555555544 444555555555555555554444433222 44444444444444


Q ss_pred             ccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCC
Q psy11652        198 EIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL  268 (325)
Q Consensus       198 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l  268 (325)
                      .+++..|..++ +|+.|++++|.+..+|..+..+++|++|++++|.++.+++..+..+++|+.|++++|.+
T Consensus       102 ~l~~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          102 VLPSAVFDRLV-HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             CCCTTTTTTCT-TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             ccChhHhCcch-hhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence            44444444444 44444444444444444444444444444444444444333334444444444444433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=5.6e-18  Score=136.46  Aligned_cols=151  Identities=19%  Similarity=0.204  Sum_probs=97.9

Q ss_pred             CCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEc
Q psy11652        137 RKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDL  216 (325)
Q Consensus       137 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l  216 (325)
                      +++|++|++++|.++.++ .+..+++|+.|++.+|.++.++ .+..+++|++|++++|.++...+..+..++ +|+.|++
T Consensus        43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~L  119 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLT-SLTLLDI  119 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCT-TCCEEEC
T ss_pred             cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCC-CCCEEEe
Confidence            445566666666665544 4556666666666666555443 333446677777777766654455566666 7777777


Q ss_pred             cCCCCcC-chHhhhCCCCCCEEeCCCCc-ccccccchhccCccCCEEEccCCCCcccCCCCCCCCCCEEECCCCcCcc
Q psy11652        217 ENNRLTN-INQCFRNLKKLKYLYLHNNN-IEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNE  292 (325)
Q Consensus       217 ~~~~l~~-~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~i~~  292 (325)
                      ++|.+.. .+..+..+++|++|++++|. ++.++  .+..+++|+.|++++|.++.++.+..+++|+.|++++|+|..
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC----
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccCC
Confidence            7777763 45567777777777777776 65554  466777778888877777776667777778888888777654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=2.1e-18  Score=145.27  Aligned_cols=168  Identities=20%  Similarity=0.212  Sum_probs=102.4

Q ss_pred             hcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEE
Q psy11652         24 ISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLS  101 (325)
Q Consensus        24 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~  101 (325)
                      ..+.++..++++++.+++++.  + ..+ ++|++|++++|.+..++.+..+++|++|++++|.+..+..+  +++|+.|+
T Consensus        16 ~~l~~l~~l~l~~~~i~~~~~--~-~~l-~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~   91 (263)
T 1xeu_A           16 PGLANAVKQNLGKQSVTDLVS--Q-KEL-SGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHHHTCSCTTSEEC--H-HHH-TTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEE
T ss_pred             HHHHHHHHHHhcCCCcccccc--h-hhc-CcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEE
Confidence            356677777777777777763  4 445 78888888888777777677777777777777777666335  66666666


Q ss_pred             eecCcccchhhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCc
Q psy11652        102 VANNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANT  180 (325)
Q Consensus       102 l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  180 (325)
                      +++|.+..+..+.. ++|++|++++|.++.++ +..+++|+.|++++|.++.++ .+..+++|+.|++++|.+..+ ..+
T Consensus        92 L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l  168 (263)
T 1xeu_A           92 VNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGL  168 (263)
T ss_dssp             CCSSCCSCCTTCCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTS
T ss_pred             CCCCccCCcCcccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHh
Confidence            66666655533333 56666666666655555 445555555555555555543 345555555555555555544 223


Q ss_pred             cCCccccEEEcccCCCcc
Q psy11652        181 FRNLNVFRLYLKFNKISE  198 (325)
Q Consensus       181 ~~~~~L~~L~l~~~~l~~  198 (325)
                      ...++|+.|++++|.+..
T Consensus       169 ~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          169 TRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             TTCCCCCEEEEEEEEEEC
T ss_pred             ccCCCCCEEeCCCCcccC
Confidence            333555555555555443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=1.1e-17  Score=147.56  Aligned_cols=175  Identities=29%  Similarity=0.343  Sum_probs=149.2

Q ss_pred             ccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCcc--CCccccEEEcccCCCcccChhhhhCccccCCEEEcc
Q psy11652        140 IEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTF--RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLE  217 (325)
Q Consensus       140 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~  217 (325)
                      -+.++++++.++.+|..+  ...++.|++++|.++.++...+  .+++|+.|++++|.++.+++..|..++ +|+.|+++
T Consensus        20 ~~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECC
T ss_pred             CCEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-CCCEEECC
Confidence            468999999999987655  3468999999999999888776  459999999999999999988999998 99999999


Q ss_pred             CCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--C---CCCCCCCEEECCCCcCc
Q psy11652        218 NNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--F---IHNKRLSHLNLGYNFLN  291 (325)
Q Consensus       218 ~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~---~~~~~L~~L~l~~n~i~  291 (325)
                      +|.+..++. .|..+++|+.|++++|.++.+.+..+.++++|+.|++++|.++.+|.  +   ..+++|+.|++++|.|+
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            999997765 68899999999999999999988889999999999999999999987  4   57899999999999999


Q ss_pred             ccccccccchh--hhcccccccccceee
Q psy11652        292 ELILESSIVEN--EIIDQNMLFNSNAVM  317 (325)
Q Consensus       292 ~~~~~~~~~~~--~~~~~~~~~~~~~~~  317 (325)
                      .++........  .+..+++..|.+.+-
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             ccCHHHhhhccHhhcceEEecCCCccCC
Confidence            99876443222  235677888887543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=2.2e-18  Score=145.17  Aligned_cols=169  Identities=23%  Similarity=0.345  Sum_probs=100.8

Q ss_pred             CCccEEEeecCcccchhhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcC
Q psy11652         95 KTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQI  173 (325)
Q Consensus        95 ~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l  173 (325)
                      .++..++++++.+..+..+..+++|+.|++++|.++.++ +..+++|++|++++|.++.++. +..+++|+.|++++|.+
T Consensus        19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l   97 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRL   97 (263)
T ss_dssp             HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCC
T ss_pred             HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCcc
Confidence            334444444444444444455556666666666555555 4455666666666666665533 66666666666666666


Q ss_pred             cccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhc
Q psy11652        174 SKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFE  253 (325)
Q Consensus       174 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~  253 (325)
                      +.++....  ++|+.|++++|.+++.+  .+..++ +|+.|++++|.++.++ .+..+++|+.|++++|.++++  ..+.
T Consensus        98 ~~l~~~~~--~~L~~L~L~~N~l~~~~--~l~~l~-~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~  169 (263)
T 1xeu_A           98 KNLNGIPS--ACLSRLFLDNNELRDTD--SLIHLK-NLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGLT  169 (263)
T ss_dssp             SCCTTCCC--SSCCEEECCSSCCSBSG--GGTTCT-TCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTST
T ss_pred             CCcCcccc--CcccEEEccCCccCCCh--hhcCcc-cccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HHhc
Confidence            65554322  66666666666666542  355666 6777777766666654 456666677777777666665  3456


Q ss_pred             cCccCCEEEccCCCCcccC
Q psy11652        254 HLVNLKSISLSGNKLTRIP  272 (325)
Q Consensus       254 ~~~~L~~L~l~~n~l~~l~  272 (325)
                      .+++|+.|++++|.+...|
T Consensus       170 ~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          170 RLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             TCCCCCEEEEEEEEEECCC
T ss_pred             cCCCCCEEeCCCCcccCCc
Confidence            6666777777766666444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=3.6e-17  Score=134.03  Aligned_cols=149  Identities=30%  Similarity=0.414  Sum_probs=90.9

Q ss_pred             cEEEccCCccccchhhccCCCCccEEEccCCcCccccc-C-ccCCccccEEEcccCCCcccChhhhhCccccCCEEEccC
Q psy11652        141 EKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNA-N-TFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLEN  218 (325)
Q Consensus       141 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~  218 (325)
                      +.++++++.++.+|..+  ...++.|++++|.++.+++ . +...++|+.|++++|.++.+++..|..++ +|+.|++++
T Consensus        14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCS
T ss_pred             CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCEEECCC
Confidence            34555555555554333  2234556666665555432 2 22336666666666666666555666666 667777766


Q ss_pred             CCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcc
Q psy11652        219 NRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNE  292 (325)
Q Consensus       219 ~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~  292 (325)
                      |.+..++. .+..+++|++|++++|.++++.+..+.++++|+.|++++|.++.+++  +..+++|+.|++++|++..
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            66665544 46666777777777777766666666666777777777777776633  6667777777777777654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.74  E-value=6.4e-19  Score=165.51  Aligned_cols=107  Identities=9%  Similarity=0.035  Sum_probs=48.1

Q ss_pred             ccccEEEcccCCCcccChhhhh-CccccCCEEEcc--C----CCCcC------chHhhhCCCCCCEEeCCCCcccccccc
Q psy11652        184 LNVFRLYLKFNKISEIHDFAFN-GLNSTLEFLDLE--N----NRLTN------INQCFRNLKKLKYLYLHNNNIEFIQNN  250 (325)
Q Consensus       184 ~~L~~L~l~~~~l~~~~~~~~~-~~~~~L~~L~l~--~----~~l~~------~~~~~~~~~~L~~L~l~~~~l~~~~~~  250 (325)
                      ++|+.|.+..+.++......+. .++ +|+.|++.  +    +.++.      ++..+..+++|+.|++++ .++.....
T Consensus       372 ~~L~~L~~~~~~l~~~~~~~l~~~~~-~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~  449 (594)
T 2p1m_B          372 PKLESVLYFCRQMTNAALITIARNRP-NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE  449 (594)
T ss_dssp             TTCCEEEEEESCCCHHHHHHHHHHCT-TCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred             hhHHHHHHhcCCcCHHHHHHHHhhCC-CcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence            4444444444444433333332 244 66666666  2    23331      111244455555555544 33332222


Q ss_pred             hhcc-CccCCEEEccCCCCcc--cCC-CCCCCCCCEEECCCCcCcc
Q psy11652        251 TFEH-LVNLKSISLSGNKLTR--IPD-FIHNKRLSHLNLGYNFLNE  292 (325)
Q Consensus       251 ~l~~-~~~L~~L~l~~n~l~~--l~~-~~~~~~L~~L~l~~n~i~~  292 (325)
                      .+.. +++|+.|++++|.+++  ++. ...+++|+.|++++|++++
T Consensus       450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~  495 (594)
T 2p1m_B          450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD  495 (594)
T ss_dssp             HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred             HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence            2222 4555555555555541  111 2345556666666655543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=6.6e-17  Score=133.28  Aligned_cols=154  Identities=27%  Similarity=0.334  Sum_probs=134.5

Q ss_pred             CCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccC-CccccEEEcccCCCcccChhhhhCccccCCEEEc
Q psy11652        138 KHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFR-NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDL  216 (325)
Q Consensus       138 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l  216 (325)
                      ..-+.++++++.++.+|..+  .++|+.|++++|.+..+.+..+. +++|+.|++++|.++.+++..|..++ +|+.|++
T Consensus        19 Cs~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-~L~~L~L   95 (229)
T 3e6j_A           19 CSGTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT-QLTVLDL   95 (229)
T ss_dssp             EETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEEC
T ss_pred             EeCCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC-CcCEEEC
Confidence            35677999999999887654  38899999999999988665554 49999999999999999888889998 9999999


Q ss_pred             cCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCccc
Q psy11652        217 ENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL  293 (325)
Q Consensus       217 ~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~  293 (325)
                      ++|.+..++. .+..+++|++|++++|.++.++. .+..+++|+.|++++|.++.++.  +..+++|+.|++++|++...
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCT-TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             CCCcCCccChhHhCcchhhCeEeccCCcccccCc-ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            9999998776 57889999999999999998765 56889999999999999998886  88999999999999999865


Q ss_pred             cc
Q psy11652        294 IL  295 (325)
Q Consensus       294 ~~  295 (325)
                      ..
T Consensus       175 c~  176 (229)
T 3e6j_A          175 CR  176 (229)
T ss_dssp             BG
T ss_pred             cc
Confidence            43

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=4.2e-17  Score=133.62  Aligned_cols=149  Identities=23%  Similarity=0.359  Sum_probs=127.1

Q ss_pred             CEEEccCCcceeecCCCCCCccEEEccCCccccc-h-hhccCCCCccEEEccCCcCcccccCccC-CccccEEEcccCCC
Q psy11652        120 KWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-N-LNLNNTYYIKDLILSYNQISKLNANTFR-NLNVFRLYLKFNKI  196 (325)
Q Consensus       120 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~L~l~~~~l  196 (325)
                      +.++++++.++.+|......+++|++++|.++.+ + ..|..+++|+.|++++|.++.+++..+. .++|+.|++++|.+
T Consensus        14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l   93 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL   93 (220)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence            5788888888888854566778999999998887 3 4578899999999999999888775444 48999999999999


Q ss_pred             cccChhhhhCccccCCEEEccCCCCcCc-hHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCc
Q psy11652        197 SEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT  269 (325)
Q Consensus       197 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~  269 (325)
                      +..++..|..++ +|++|++++|.+..+ |..+..+++|++|++++|.++++.+..+..+++|+.|++++|.+.
T Consensus        94 ~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           94 ENVQHKMFKGLE-SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CCCCGGGGTTCS-SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CccCHhHhcCCc-CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            998888888888 999999999999876 457888999999999999999988888888999999999999887

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.73  E-value=4e-17  Score=133.72  Aligned_cols=149  Identities=26%  Similarity=0.367  Sum_probs=115.6

Q ss_pred             CEEEccCCcceeecCCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCccC-CccccEEEcccCCCc
Q psy11652        120 KWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFR-NLNVFRLYLKFNKIS  197 (325)
Q Consensus       120 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~L~l~~~~l~  197 (325)
                      +.++++++.++.+|....++++.|++++|.++.+ +..|..+++|+.|++++|.++.+.+..+. .++|++|++++|.++
T Consensus        14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~   93 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT   93 (220)
T ss_dssp             TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence            4667777777777743447788888888888877 55778888888888888888776554444 488888888888888


Q ss_pred             ccChhhhhCccccCCEEEccCCCCcCch-HhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCc
Q psy11652        198 EIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT  269 (325)
Q Consensus       198 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~  269 (325)
                      .+++..|..++ +|+.|++++|.+..++ ..+..+++|++|++++|.++++++..+..+++|+.|++++|.+.
T Consensus        94 ~l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           94 ELPKSLFEGLF-SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCHhHccCCC-CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            88777777787 8888888888887664 46778888888888888888887777788888888888888776

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.73  E-value=1e-16  Score=130.22  Aligned_cols=153  Identities=25%  Similarity=0.346  Sum_probs=134.3

Q ss_pred             ccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccC-CccccEEEcccCCCcccChhhhhCccccCCEEEccC
Q psy11652        140 IEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFR-NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLEN  218 (325)
Q Consensus       140 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~  218 (325)
                      -+.++++++.++.+|..+  .++|+.|++.+|.++.++...+. .++|++|++++|.++.+++..|..++ +|++|++++
T Consensus         9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~   85 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-SLTYLNLST   85 (208)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCS
T ss_pred             CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC-CcCEEECCC
Confidence            357888888888886444  46899999999999988877654 49999999999999999888888998 999999999


Q ss_pred             CCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCccccc
Q psy11652        219 NRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELIL  295 (325)
Q Consensus       219 ~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~  295 (325)
                      |.+..++. .+..+++|++|++++|.++++++..+..+++|+.|++++|.++.++.  +..+++|+.|++++|++....+
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence            99997776 57899999999999999999988888999999999999999998887  8889999999999998876544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=3.2e-17  Score=131.99  Aligned_cols=148  Identities=17%  Similarity=0.201  Sum_probs=92.6

Q ss_pred             CCCCEEEccCCcceeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcc-cccCccCCccccEEEcccC
Q psy11652        117 TSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISK-LNANTFRNLNVFRLYLKFN  194 (325)
Q Consensus       117 ~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~  194 (325)
                      ++|+.|++++|.+..++ ...+++|++|++++|.++.. ..+..+++|+.|++++|.++. .+..+..+++|+.|++++|
T Consensus        44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n  122 (197)
T 4ezg_A           44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS  122 (197)
T ss_dssp             HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred             CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence            34444444444444444 33444555555555543333 245556666666666666654 3333334467777777777


Q ss_pred             CCcccChhhhhCccccCCEEEccCCC-CcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCc
Q psy11652        195 KISEIHDFAFNGLNSTLEFLDLENNR-LTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT  269 (325)
Q Consensus       195 ~l~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~  269 (325)
                      .+++..+..+..++ +|+.|++++|. ++.++ .+..+++|+.|++++|.++.++  .+..+++|+.|++++|.+.
T Consensus       123 ~i~~~~~~~l~~l~-~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          123 AHDDSILTKINTLP-KVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             BCBGGGHHHHTTCS-SCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred             ccCcHhHHHHhhCC-CCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence            77765566777777 88888888886 77776 5777888888888888887765  4677788888888888775

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.72  E-value=5.7e-16  Score=138.00  Aligned_cols=240  Identities=15%  Similarity=0.189  Sum_probs=196.1

Q ss_pred             ccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc-cCCccEEEeecCcccch--hhhccCCCCCEE
Q psy11652         50 EIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL-PKTMETLSVANNYLVNY--LELNRMTSLKWI  122 (325)
Q Consensus        50 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l-~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L  122 (325)
                      ..+..++.+.+.+ .++.++  +|.++ +|+.+.+..+ +..+  .+| -.+|+.+.+.. .+..+  .+|.++++|+.+
T Consensus       110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCee
Confidence            3447888888875 467776  78886 7999999765 6666  566 56799999986 45555  789999999999


Q ss_pred             EccCCcceeec--CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCccc
Q psy11652        123 VLSNNYIKEFV--IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEI  199 (325)
Q Consensus       123 ~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~  199 (325)
                      ++..+.++.++  .....+|+.+.+..+ ++.+ ..+|.++++|+.+.+..+ ++.+....+..++|+.+.+. +.++.+
T Consensus       186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~~i~~I  262 (401)
T 4fdw_A          186 DLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP-NGVTNI  262 (401)
T ss_dssp             ECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE-TTCCEE
T ss_pred             ecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC-CCccEE
Confidence            99999999888  344689999999854 7777 788999999999999875 77888888888999999994 567888


Q ss_pred             ChhhhhCccccCCEEEccCCCCc-----CchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC
Q psy11652        200 HDFAFNGLNSTLEFLDLENNRLT-----NINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD  273 (325)
Q Consensus       200 ~~~~~~~~~~~L~~L~l~~~~l~-----~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~  273 (325)
                      ...+|.+++ +|+.+.+.++.+.     .++. .|..|++|+.+.+. +.+..+....|.+|++|+.+.+..+ ++.++.
T Consensus       263 ~~~aF~~c~-~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~  339 (401)
T 4fdw_A          263 ASRAFYYCP-ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINF  339 (401)
T ss_dssp             CTTTTTTCT-TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred             ChhHhhCCC-CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence            888999998 9999999887654     3444 88999999999998 4588888889999999999999554 777776


Q ss_pred             --CCCCCCCCEEECCCCcCcccccccccc
Q psy11652        274 --FIHNKRLSHLNLGYNFLNELILESSIV  300 (325)
Q Consensus       274 --~~~~~~L~~L~l~~n~i~~~~~~~~~~  300 (325)
                        |.++ +|+.+++.+|.+..++...+..
T Consensus       340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~  367 (401)
T 4fdw_A          340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYG  367 (401)
T ss_dssp             TSSSSS-CCCEEEECCSSCCBCCCSSCCC
T ss_pred             HhCCCC-CCCEEEEcCCCCcccccccccC
Confidence              8999 9999999999988888776543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.72  E-value=1.3e-18  Score=163.42  Aligned_cols=287  Identities=14%  Similarity=0.090  Sum_probs=150.0

Q ss_pred             hcccccceEEcCCCceeeecCCCcCcccccCccEEECCCC-cccc--cc-cccCCCCccEEEccCCCCccc-----ccc-
Q psy11652         24 ISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGEN-HIHQ--IE-NLNGFRSILWLNMDSNLLQTL-----DSL-   93 (325)
Q Consensus        24 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~-~~~~--~~-~~~~~~~L~~L~l~~~~~~~~-----~~l-   93 (325)
                      ..|++|++|+++++.+++.....+ ...+++|++|++++| .++.  ++ .+.++++|++|++++|.+.+.     ..+ 
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l-~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELI-AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHH-HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHH-HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            367788888888777664443234 322377888888777 4544  33 334677777777777765543     112 


Q ss_pred             --cCCccEEEeecCc--ccch---hhhccCCCCCEEEccCC-cceeec--CC----------------------------
Q psy11652         94 --PKTMETLSVANNY--LVNY---LELNRMTSLKWIVLSNN-YIKEFV--IP----------------------------  135 (325)
Q Consensus        94 --~~~L~~L~l~~~~--l~~~---~~~~~~~~L~~L~l~~~-~~~~~~--~~----------------------------  135 (325)
                        +++|+.|+++++.  +...   .....+++|++|++++| .+..++  ..                            
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~  260 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA  260 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence              5577777777664  2111   22344577777777665 222222  11                            


Q ss_pred             --------------------------CCCCccEEEccCCccccc--hhhccCCCCccEEEccCCcCcc--cccCccCCcc
Q psy11652        136 --------------------------NRKHIEKLDLSNNLISTI--NLNLNNTYYIKDLILSYNQISK--LNANTFRNLN  185 (325)
Q Consensus       136 --------------------------~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~  185 (325)
                                                .+++|++|++++|.++..  ...+..+++|+.|++.+| +..  +......+++
T Consensus       261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~  339 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD  339 (594)
T ss_dssp             HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred             HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence                                      234555555555554432  223445555555555555 221  1111112355


Q ss_pred             ccEEEccc---------CCCcccChhhhh-CccccCCEEEccCCCCcCc-hHhh-hCCCCCCEEeCC--C----Cccccc
Q psy11652        186 VFRLYLKF---------NKISEIHDFAFN-GLNSTLEFLDLENNRLTNI-NQCF-RNLKKLKYLYLH--N----NNIEFI  247 (325)
Q Consensus       186 L~~L~l~~---------~~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~-~~~~-~~~~~L~~L~l~--~----~~l~~~  247 (325)
                      |+.|++.+         +.+++.....+. .++ +|+.|.+..+.++.. ...+ ..+++|+.|++.  +    +.++..
T Consensus       340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~-~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~  418 (594)
T 2p1m_B          340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP-KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE  418 (594)
T ss_dssp             CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCT-TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred             CCEEEEecCcccccccCCCCCHHHHHHHHHhch-hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence            66666522         233322222222 244 666666655555521 1222 246677777776  3    344422


Q ss_pred             c-----cchhccCccCCEEEccCCCCcc--cCCCC-CCCCCCEEECCCCcCcccccccc-cchhhhcccccccccc
Q psy11652        248 Q-----NNTFEHLVNLKSISLSGNKLTR--IPDFI-HNKRLSHLNLGYNFLNELILESS-IVENEIIDQNMLFNSN  314 (325)
Q Consensus       248 ~-----~~~l~~~~~L~~L~l~~n~l~~--l~~~~-~~~~L~~L~l~~n~i~~~~~~~~-~~~~~~~~~~~~~~~~  314 (325)
                      +     ...+..+++|+.|++++ .++.  ++.+. .+++|+.|++++|.+++...... ....++..+++..|.+
T Consensus       419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            1     11245567777777766 4442  11122 36778888888888765444322 2234566667777766

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=7.7e-17  Score=140.29  Aligned_cols=250  Identities=14%  Similarity=0.117  Sum_probs=158.5

Q ss_pred             ccccceEEcCCCcee--eecCCCcCcccccCccEEECCCCcccccccccC--------CCCccEEEccCCCCccc--ccc
Q psy11652         26 CILLMSAENEDNQIA--ELETANWSPEIQNKLTTLFIGENHIHQIENLNG--------FRSILWLNMDSNLLQTL--DSL   93 (325)
Q Consensus        26 ~~~L~~L~l~~~~i~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~--~~l   93 (325)
                      +++|++|||+++.|.  ..+...+     +.++.+.+..+.+..- +|.+        |++|+++++.. .+..+  .+|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~-----~~~~~~~~~~~~I~~~-aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF  120 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTY-----PNGKFYIYMANFVPAY-AFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF  120 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSS-----GGGCCEEECTTEECTT-TTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred             hccCeEEecCcceeEEecCccccc-----cccccccccccccCHH-HhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence            678999999999998  4443222     2244444444422211 5666        77788887777 66666  456


Q ss_pred             --cCCccEEEeecCcccch--hhhccCCCCCEEEccCCcc----eeec---CCCCCCcc-EEEccCCc-cccc-hhhccC
Q psy11652         94 --PKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYI----KEFV---IPNRKHIE-KLDLSNNL-ISTI-NLNLNN  159 (325)
Q Consensus        94 --~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~----~~~~---~~~~~~L~-~L~l~~~~-~~~~-~~~~~~  159 (325)
                        +++|+.+++++|.+..+  .+|..+.++..+.......    ..+.   +..+..|+ .+.+.... +... ...-..
T Consensus       121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~  200 (329)
T 3sb4_A          121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ  200 (329)
T ss_dssp             TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred             hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence              77788888777776666  5666666565555544221    1111   22334444 33333221 1111 111122


Q ss_pred             CCCccEEEccCCcCcccccCcc-CCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCC-E
Q psy11652        160 TYYIKDLILSYNQISKLNANTF-RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLK-Y  236 (325)
Q Consensus       160 ~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~-~  236 (325)
                      ..+++.+.+.+.-...-...+. .+++|+.+++++|.++.++..+|.++. +|+++++.++ +..++. .|.+|++|+ .
T Consensus       201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~-~L~~l~l~~n-i~~I~~~aF~~~~~L~~~  278 (329)
T 3sb4_A          201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK-YLLKIKLPHN-LKTIGQRVFSNCGRLAGT  278 (329)
T ss_dssp             GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred             ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC-CCCEEECCcc-cceehHHHhhCChhccEE
Confidence            4455666665542111111111 147888888888888888888888888 8888888887 666665 788888888 8


Q ss_pred             EeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEEC
Q psy11652        237 LYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNL  285 (325)
Q Consensus       237 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l  285 (325)
                      +.+.. .++.+.+..|.+|++|+.+++.+|.++.++.  |.++++|+.+..
T Consensus       279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            88887 6778888888888899999988888888877  888888888764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=7.3e-17  Score=140.43  Aligned_cols=118  Identities=18%  Similarity=0.073  Sum_probs=95.3

Q ss_pred             ccccEEEcccCCCcccChhhhh-CccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCC-E
Q psy11652        184 LNVFRLYLKFNKISEIHDFAFN-GLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK-S  260 (325)
Q Consensus       184 ~~L~~L~l~~~~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~-~  260 (325)
                      .++..+.+.++-. ......+. .++ +|+.+++.+|.+..++. .|..|++|+.+.+..| +..++...|.++++|+ .
T Consensus       202 ~~~~~l~~~~~l~-~~~~~~l~~~~~-~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~  278 (329)
T 3sb4_A          202 RDINFLTIEGKLD-NADFKLIRDYMP-NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT  278 (329)
T ss_dssp             GGCSEEEEEECCC-HHHHHHHHHHCT-TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred             cccceEEEeeeec-HHHHHHHHHhcC-CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence            4555666655422 11122222 255 99999999999998887 7999999999999998 8889999999999999 9


Q ss_pred             EEccCCCCcccCC--CCCCCCCCEEECCCCcCcccccccccchhhhc
Q psy11652        261 ISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVENEII  305 (325)
Q Consensus       261 L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~  305 (325)
                      +++.+ .++.+++  |..|++|+.+++.+|.++.++...+....++.
T Consensus       279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~  324 (329)
T 3sb4_A          279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK  324 (329)
T ss_dssp             EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred             EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence            99998 8888886  99999999999999999999998877655543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.69  E-value=1.9e-15  Score=134.60  Aligned_cols=254  Identities=11%  Similarity=0.206  Sum_probs=200.3

Q ss_pred             cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCcc
Q psy11652         25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTME   98 (325)
Q Consensus        25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~   98 (325)
                      .|..++.+.+.+ .++.++...| ...  +|+.+.+..+ +..++  +|.++ +|+.+.+.. .+..+  ..|  +++|+
T Consensus       111 ~~~~l~~i~ip~-~i~~I~~~aF-~~~--~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~  183 (401)
T 4fdw_A          111 ILKGYNEIILPN-SVKSIPKDAF-RNS--QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK  183 (401)
T ss_dssp             ECSSCSEEECCT-TCCEECTTTT-TTC--CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred             ecCCccEEEECC-ccCEehHhhc-ccC--CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence            446777777774 5788888788 543  6999999765 77777  78876 699999975 56666  566  89999


Q ss_pred             EEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCc
Q psy11652         99 TLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQ  172 (325)
Q Consensus        99 ~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~  172 (325)
                      .+++.+|.+..+  ..+. ..+|+.+.+..+ +..++   +..+.+|+.+.+..+ ++.+ ..+|.+ .+|+.+.+.. .
T Consensus       184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~  258 (401)
T 4fdw_A          184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-G  258 (401)
T ss_dssp             EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-T
T ss_pred             eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-C
Confidence            999998888877  4454 689999999744 66666   667889999999874 5666 677877 7899999954 5


Q ss_pred             CcccccCccCC-ccccEEEcccCCCc-----ccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCccc
Q psy11652        173 ISKLNANTFRN-LNVFRLYLKFNKIS-----EIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIE  245 (325)
Q Consensus       173 l~~~~~~~~~~-~~L~~L~l~~~~l~-----~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~  245 (325)
                      ++.++...+.. ++|+.+++.++.+.     .+...+|.+++ +|+.+.+.. .+..++. .|.+|.+|+.+.+..+ ++
T Consensus       259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~-~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~  335 (401)
T 4fdw_A          259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP-KLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT  335 (401)
T ss_dssp             CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT-TCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred             ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc-cCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc
Confidence            77787777766 89999999887665     57788999998 999999984 4776665 8899999999999665 77


Q ss_pred             ccccchhccCccCCEEEccCCCCcccCC--CCCC-CCCCEEECCCCcCcccc
Q psy11652        246 FIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHN-KRLSHLNLGYNFLNELI  294 (325)
Q Consensus       246 ~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~-~~L~~L~l~~n~i~~~~  294 (325)
                      .+....|.++ +|+.+++.+|.+..++.  |..+ .+++.+.+..+.+....
T Consensus       336 ~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~~y~  386 (401)
T 4fdw_A          336 QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEKYK  386 (401)
T ss_dssp             EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHHHHH
T ss_pred             EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHHHhh
Confidence            8888889999 99999999999988776  7766 47889988877655443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=1.1e-15  Score=119.75  Aligned_cols=135  Identities=21%  Similarity=0.203  Sum_probs=66.7

Q ss_pred             CCCCccEEEccCCccc--cchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCE
Q psy11652        136 NRKHIEKLDLSNNLIS--TINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEF  213 (325)
Q Consensus       136 ~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~  213 (325)
                      ..++|+.|++++|.++  .+|..+..+++|+.|++.+|.++.+ ..+..+++|+.|++++|.++...+..+..++ +|+.
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP-NLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-TCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCC-CCCE
Confidence            3455555555555555  3344455555555555555555544 3333335555555555555543333444444 5555


Q ss_pred             EEccCCCCcCch--HhhhCCCCCCEEeCCCCccccccc---chhccCccCCEEEccCCCCcccC
Q psy11652        214 LDLENNRLTNIN--QCFRNLKKLKYLYLHNNNIEFIQN---NTFEHLVNLKSISLSGNKLTRIP  272 (325)
Q Consensus       214 L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~l~~~~~---~~l~~~~~L~~L~l~~n~l~~l~  272 (325)
                      |++++|.+..++  ..+..+++|++|++++|.+++.++   ..+..+++|+.|++++|.+..+|
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            555555555443  344445555555555555544433   23444444444444444444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=2.1e-18  Score=160.30  Aligned_cols=180  Identities=20%  Similarity=0.198  Sum_probs=134.6

Q ss_pred             ccCCCCCEEEccCCcceeec--CCCCCCccEEEccCCc-------------cccc-hhhccCCCCccEEE-ccCCcCccc
Q psy11652        114 NRMTSLKWIVLSNNYIKEFV--IPNRKHIEKLDLSNNL-------------ISTI-NLNLNNTYYIKDLI-LSYNQISKL  176 (325)
Q Consensus       114 ~~~~~L~~L~l~~~~~~~~~--~~~~~~L~~L~l~~~~-------------~~~~-~~~~~~~~~L~~L~-l~~~~l~~~  176 (325)
                      ...+.|+.|++++|.++.+|  +..+.+|+.|+++++.             .... |..++++++|+.|+ +..+.+..+
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            44556666666666666555  4455566666654442             2223 56667777777777 444433322


Q ss_pred             ccCc------c--CCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccc
Q psy11652        177 NANT------F--RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQ  248 (325)
Q Consensus       177 ~~~~------~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~  248 (325)
                      ....      .  ....|+.|++++|.+++++.  +..++ +|+.|++++|.+..+|..++.+++|+.|++++|.+++++
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp  502 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLL-LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD  502 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC--GGGGT-TCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCCCcC--ccccc-cCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc
Confidence            2100      0  11358899999999998753  88888 999999999999999999999999999999999999875


Q ss_pred             cchhccCccCCEEEccCCCCccc--CC-CCCCCCCCEEECCCCcCcccccccc
Q psy11652        249 NNTFEHLVNLKSISLSGNKLTRI--PD-FIHNKRLSHLNLGYNFLNELILESS  298 (325)
Q Consensus       249 ~~~l~~~~~L~~L~l~~n~l~~l--~~-~~~~~~L~~L~l~~n~i~~~~~~~~  298 (325)
                        .++.+++|+.|++++|.++.+  |. +..+++|+.|++++|+++++++...
T Consensus       503 --~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~  553 (567)
T 1dce_A          503 --GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE  553 (567)
T ss_dssp             --GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred             --ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence              688899999999999999987  55 9999999999999999999987653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=1.2e-15  Score=119.38  Aligned_cols=136  Identities=22%  Similarity=0.205  Sum_probs=115.6

Q ss_pred             cCCCCccEEEccCCcCc--ccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcC-chHhhhCCCCC
Q psy11652        158 NNTYYIKDLILSYNQIS--KLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN-INQCFRNLKKL  234 (325)
Q Consensus       158 ~~~~~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L  234 (325)
                      ...++|+.|++.+|.++  .++..+..+++|+.|++++|.++..  ..+..++ +|+.|++++|.+.. +|..+..+++|
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLP-KLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCS-SCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCC-CCCEEECcCCcCchHHHHHHhhCCCC
Confidence            34578999999999988  7776655669999999999999887  5777888 99999999999986 77777779999


Q ss_pred             CEEeCCCCccccccc-chhccCccCCEEEccCCCCcccCC-----CCCCCCCCEEECCCCcCcccccc
Q psy11652        235 KYLYLHNNNIEFIQN-NTFEHLVNLKSISLSGNKLTRIPD-----FIHNKRLSHLNLGYNFLNELILE  296 (325)
Q Consensus       235 ~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~l~~l~~-----~~~~~~L~~L~l~~n~i~~~~~~  296 (325)
                      ++|++++|.+++++. ..+..+++|+.|++++|.++.+|.     +..+++|+.|++++|.+..++..
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            999999999988753 578888999999999999997765     78889999999999999888764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=5.4e-18  Score=157.57  Aligned_cols=195  Identities=19%  Similarity=0.182  Sum_probs=140.0

Q ss_pred             cCccEEECCCCcccccc-cccCCCCccEEEccCCCC-------------ccc--ccc--cCCccEEE-eecCcccchhhh
Q psy11652         53 NKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLL-------------QTL--DSL--PKTMETLS-VANNYLVNYLEL  113 (325)
Q Consensus        53 ~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~-------------~~~--~~l--~~~L~~L~-l~~~~l~~~~~~  113 (325)
                      ++|+.|+|++|.++.+| .+++|++|+.|++++|..             ...  ..+  +++|+.|+ ++.+.+      
T Consensus       349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~------  422 (567)
T 1dce_A          349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL------  422 (567)
T ss_dssp             TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH------
T ss_pred             ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc------
Confidence            68888888888888888 788888888888865531             000  111  33333333 222211      


Q ss_pred             ccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEccc
Q psy11652        114 NRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKF  193 (325)
Q Consensus       114 ~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~  193 (325)
                         ..|+.+.+.+|.++.++   ...|+.|++++|.++.+|. +..+++|+.|++++|.++.+|..+..+++|+.|++++
T Consensus       423 ---~~L~~l~l~~n~i~~l~---~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~  495 (567)
T 1dce_A          423 ---DDLRSKFLLENSVLKME---YADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD  495 (567)
T ss_dssp             ---HHHHHHHHHHHHHHHHH---HTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS
T ss_pred             ---chhhhhhhhcccccccC---ccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCC
Confidence               11222233334444444   2248889999998888865 8888999999999999888888777779999999999


Q ss_pred             CCCcccChhhhhCccccCCEEEccCCCCcCc--hHhhhCCCCCCEEeCCCCcccccccc---hhccCccCCEEEc
Q psy11652        194 NKISEIHDFAFNGLNSTLEFLDLENNRLTNI--NQCFRNLKKLKYLYLHNNNIEFIQNN---TFEHLVNLKSISL  263 (325)
Q Consensus       194 ~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~---~l~~~~~L~~L~l  263 (325)
                      |.+++++  .+..++ +|+.|++++|.++.+  |..+..+++|+.|++++|.+++.++.   .+..+++|+.|++
T Consensus       496 N~l~~lp--~l~~l~-~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          496 NALENVD--GVANLP-RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCCCCCG--GGTTCS-SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCc--ccCCCC-CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            9998864  788888 999999999999877  77889999999999999999887652   2344788888864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=6.8e-15  Score=117.80  Aligned_cols=127  Identities=28%  Similarity=0.337  Sum_probs=90.3

Q ss_pred             cEEEccCCcCcccccCccCCccccEEEcccCCCcccChh-hhhCccccCCEEEccCCCCcCc-hHhhhCCCCCCEEeCCC
Q psy11652        164 KDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDF-AFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHN  241 (325)
Q Consensus       164 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~  241 (325)
                      +.++++++.++.+|..+.  .+++.|++++|.++.+++. .+..++ +|+.|++++|.++.+ |..+..+++|++|++++
T Consensus        11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCC-CCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            566677776666665443  3677777777777766553 366676 777777777777755 44677777788888888


Q ss_pred             CcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCccc
Q psy11652        242 NNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL  293 (325)
Q Consensus       242 ~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~  293 (325)
                      |.++++++..+.++++|+.|++++|+++.+++  +..+++|+.|++++|+++..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            87777777667777788888888888875533  77777888888888877654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=1.2e-14  Score=114.76  Aligned_cols=132  Identities=26%  Similarity=0.380  Sum_probs=112.3

Q ss_pred             ccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCC
Q psy11652        163 IKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHN  241 (325)
Q Consensus       163 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~  241 (325)
                      .+.+++.++.++.++....  ++++.|++++|.+++.++..+..++ +|+.|++++|.+..++. .+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            4677888888877775432  6888999999998888877788888 99999999999987775 568899999999999


Q ss_pred             CcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCccccccc
Q psy11652        242 NNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILES  297 (325)
Q Consensus       242 ~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~  297 (325)
                      |.++++++..+..+++|+.|++++|.++.+|.  +..+++|+.|++++|++....+..
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l  143 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  143 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccH
Confidence            99999888788889999999999999998887  688999999999999998766543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=6.6e-15  Score=112.82  Aligned_cols=127  Identities=19%  Similarity=0.207  Sum_probs=80.3

Q ss_pred             CCCCccEEEccCCccc--cchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCE
Q psy11652        136 NRKHIEKLDLSNNLIS--TINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEF  213 (325)
Q Consensus       136 ~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~  213 (325)
                      ..++++.|++++|.++  .++..+..+++|+.|++++|.++.+ ..+...++|++|++++|.+++..+..+..++ +|+.
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP-NLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-TCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCC-CCCE
Confidence            3456666777766666  3455566667777777777766655 3344446677777777766664455555566 6777


Q ss_pred             EEccCCCCcCch--HhhhCCCCCCEEeCCCCccccccc---chhccCccCCEEEcc
Q psy11652        214 LDLENNRLTNIN--QCFRNLKKLKYLYLHNNNIEFIQN---NTFEHLVNLKSISLS  264 (325)
Q Consensus       214 L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~l~~~~~---~~l~~~~~L~~L~l~  264 (325)
                      |++++|.++.++  ..+..+++|++|++++|.+++.++   ..+..+++|+.|+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            777777666554  456666667777777776666554   455666666666654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=1.4e-14  Score=116.01  Aligned_cols=125  Identities=30%  Similarity=0.436  Sum_probs=94.1

Q ss_pred             cEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCC
Q psy11652        164 KDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNN  242 (325)
Q Consensus       164 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~  242 (325)
                      +.+++.++.++.+|..+.  ++++.|++++|.++.++ ..|..++ +|+.|++++|.++.++. .|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip-~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVP-KELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCC-GGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhH-HHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            456677777776665432  57777777777777665 5677777 78888888888776654 5777888888888888


Q ss_pred             cccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcc
Q psy11652        243 NIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNE  292 (325)
Q Consensus       243 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~  292 (325)
                      .++.+++..+.++++|+.|++++|.++.+|.  +..+++|+.|++++|++..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            8888777777888888888888888887776  7778888888888888764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.56  E-value=6.4e-15  Score=116.24  Aligned_cols=132  Identities=20%  Similarity=0.193  Sum_probs=66.2

Q ss_pred             ccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCC
Q psy11652        157 LNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKL  234 (325)
Q Consensus       157 ~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L  234 (325)
                      +.++.+|+.|++.+|.++.++. +... ++|+.|++++|.++++  ..+..++ +|+.|++++|.+..+|. .+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLR-RLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCS-SCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc--cccccCC-CCCEEECCCCcccccCcchhhcCCCC
Confidence            3344455555555555544422 2222 2555555555555544  2344444 55555555555554443 23455555


Q ss_pred             CEEeCCCCccccccc-chhccCccCCEEEccCCCCcccCC-----CCCCCCCCEEECCCCcCcc
Q psy11652        235 KYLYLHNNNIEFIQN-NTFEHLVNLKSISLSGNKLTRIPD-----FIHNKRLSHLNLGYNFLNE  292 (325)
Q Consensus       235 ~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~l~~l~~-----~~~~~~L~~L~l~~n~i~~  292 (325)
                      ++|++++|.++.++. ..+..+++|+.|++++|.+..+|.     +..+++|+.|++++|.+.+
T Consensus        91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            555555555544433 234455555555555555555443     4455556666665555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=1.6e-14  Score=110.66  Aligned_cols=124  Identities=25%  Similarity=0.252  Sum_probs=93.3

Q ss_pred             CCCccEEEccCCcCc--ccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcC-chHhhhCCCCCCE
Q psy11652        160 TYYIKDLILSYNQIS--KLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN-INQCFRNLKKLKY  236 (325)
Q Consensus       160 ~~~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~  236 (325)
                      .++++.|++.+|.++  .++..+..+++|+.|++++|.++..  ..+..++ +|+.|++++|.+.. +|..+..+++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLN-KLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCT-TCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCC-CCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            467888888888877  5666555558888888888888776  4667777 88888888888876 6666667888888


Q ss_pred             EeCCCCcccccc-cchhccCccCCEEEccCCCCcccCC-----CCCCCCCCEEECC
Q psy11652        237 LYLHNNNIEFIQ-NNTFEHLVNLKSISLSGNKLTRIPD-----FIHNKRLSHLNLG  286 (325)
Q Consensus       237 L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~n~l~~l~~-----~~~~~~L~~L~l~  286 (325)
                      |++++|.+++++ +..+..+++|+.|++++|.++.++.     +..+++|+.|+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            888888887753 2467777888888888888876654     6667788877765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.55  E-value=2.6e-14  Score=114.37  Aligned_cols=107  Identities=30%  Similarity=0.485  Sum_probs=50.3

Q ss_pred             CccEEEccCCcCcccccC--ccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEe
Q psy11652        162 YIKDLILSYNQISKLNAN--TFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLY  238 (325)
Q Consensus       162 ~L~~L~l~~~~l~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~  238 (325)
                      +++.|++.+|.++.++..  +...++|++|++++|.+++..+..|..++ +|+.|++++|.+..++. .+..+++|++|+
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-HIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc-cCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            444444444444443332  22224444444444444444444444444 55555555555443332 344445555555


Q ss_pred             CCCCcccccccchhccCccCCEEEccCCCCc
Q psy11652        239 LHNNNIEFIQNNTFEHLVNLKSISLSGNKLT  269 (325)
Q Consensus       239 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~  269 (325)
                      +++|.++++.+..+..+++|+.|++++|.+.
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            5555555444444445555555555555544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=6.9e-14  Score=111.94  Aligned_cols=123  Identities=26%  Similarity=0.384  Sum_probs=63.7

Q ss_pred             EEEccCCcceeecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCCccc
Q psy11652        121 WIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKISEI  199 (325)
Q Consensus       121 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l~~~  199 (325)
                      .++++++.++.+|....+++++|++++|.++.+|..|.++++|+.|++++|.++.+++..+.. ++|+.|++++|.++.+
T Consensus        14 ~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i   93 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI   93 (193)
T ss_dssp             EEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred             EEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEe
Confidence            455555555555532334555555555555555545555555555555555555544433332 5555555555555555


Q ss_pred             ChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcc
Q psy11652        200 HDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNI  244 (325)
Q Consensus       200 ~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l  244 (325)
                      ++..|..++ +|+.|++++|.+..++. .+..+++|+.|++++|.+
T Consensus        94 ~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           94 PPRTFDGLK-SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CHHHhCCCC-CCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            554555554 55555555555554443 344455555555555544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=9.9e-15  Score=115.14  Aligned_cols=134  Identities=22%  Similarity=0.193  Sum_probs=107.5

Q ss_pred             CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCE
Q psy11652        134 IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEF  213 (325)
Q Consensus       134 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~  213 (325)
                      +..+.+|+.|++++|.++.++......++|+.|++++|.++.+ ..+..+++|++|++++|.++.+++..+..++ +|+.
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~   92 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP-DLTE   92 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT-TCCE
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCC-CCCE
Confidence            4467888999999998887754333344899999999988877 4455568899999999999888766677888 8999


Q ss_pred             EEccCCCCcCchH--hhhCCCCCCEEeCCCCcccccccc---hhccCccCCEEEccCCCCc
Q psy11652        214 LDLENNRLTNINQ--CFRNLKKLKYLYLHNNNIEFIQNN---TFEHLVNLKSISLSGNKLT  269 (325)
Q Consensus       214 L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~---~l~~~~~L~~L~l~~n~l~  269 (325)
                      |++++|.+..+|.  .+..+++|+.|++++|.++.++..   .+..+++|+.|++++|...
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            9999998888876  788888999999999988876653   4778889999999888766

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.52  E-value=2.3e-15  Score=144.00  Aligned_cols=146  Identities=16%  Similarity=0.153  Sum_probs=59.1

Q ss_pred             cccceEEcCCCceeeecCCCcCcccccCccEEEC-----CCCcccccc-cccCCCCccEEEccCCCCccc-ccc--cCCc
Q psy11652         27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFI-----GENHIHQIE-NLNGFRSILWLNMDSNLLQTL-DSL--PKTM   97 (325)
Q Consensus        27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l-----~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~l--~~~L   97 (325)
                      +.++.|++.++.+...+. .+ ... ..|..+.+     ..+.+...+ .+..++.|+.|++++|.+..+ ..+  +++|
T Consensus       173 ~~~~~l~L~~n~~~~~~~-~~-l~~-l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQ-AL-LQH-KKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL  249 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCcchh-hH-hhc-CccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence            456667776666666554 12 111 12222222     222222222 455566666666666666555 222  5566


Q ss_pred             cEEEeecCcccch-hhhccCCCCCEEEccCCcceeec--CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCc
Q psy11652         98 ETLSVANNYLVNY-LELNRMTSLKWIVLSNNYIKEFV--IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQIS  174 (325)
Q Consensus        98 ~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  174 (325)
                      +.|+|++|.++.+ ..+..+++|++|+|++|.++.+|  +..+.+|++|++++|.++.+|..|..+++|+.|++++|.+.
T Consensus       250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred             CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence            6666666655544 44555566666666666555555  44455555555555555555444555555555555555555


Q ss_pred             c
Q psy11652        175 K  175 (325)
Q Consensus       175 ~  175 (325)
                      .
T Consensus       330 ~  330 (727)
T 4b8c_D          330 K  330 (727)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=2.2e-13  Score=107.47  Aligned_cols=125  Identities=24%  Similarity=0.339  Sum_probs=56.1

Q ss_pred             CEEEccCCcceeecCCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCccC-CccccEEEcccCCCc
Q psy11652        120 KWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFR-NLNVFRLYLKFNKIS  197 (325)
Q Consensus       120 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~L~l~~~~l~  197 (325)
                      +.++++++.++.+|....++++.|++++|.++.+ +..+..+++|+.|++++|.++.++...+. .++|+.|++++|.++
T Consensus        10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~   89 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ   89 (177)
T ss_dssp             TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc
Confidence            3444444555444432334555555555555444 33344445555555555544444433322 244444444444444


Q ss_pred             ccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCccc
Q psy11652        198 EIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIE  245 (325)
Q Consensus       198 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~  245 (325)
                      ..++..+..++ +|+.|++++|.+..++. .+..+++|++|++++|.+.
T Consensus        90 ~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           90 SLPNGVFDKLT-QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCHHHhhCCc-ccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            44443344444 44444444444443333 2233444444444444433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.49  E-value=3.9e-14  Score=135.58  Aligned_cols=113  Identities=31%  Similarity=0.425  Sum_probs=50.0

Q ss_pred             hhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCC
Q psy11652        154 NLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKK  233 (325)
Q Consensus       154 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~  233 (325)
                      +..+..+..|+.|++++|.+..++..++.+++|+.|++++|.++.++ ..+..++ +|+.|++++|.+..+|..+..+++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~  294 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELP-AEIKNLS-NLRVLDLSHNRLTSLPAELGSCFQ  294 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCC-GGGGGGT-TCCEEECTTSCCSSCCSSGGGGTT
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccC-hhhhCCC-CCCEEeCcCCcCCccChhhcCCCC
Confidence            33444455555555555555444444444444444444444444332 2344444 444444444444444444444444


Q ss_pred             CCEEeCCCCcccccccchhccCccCCEEEccCCCCc
Q psy11652        234 LKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT  269 (325)
Q Consensus       234 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~  269 (325)
                      |++|++++|.++.++. .++.+++|+.|+|++|.++
T Consensus       295 L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          295 LKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             CSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCCC
T ss_pred             CCEEECCCCCCCccCh-hhhcCCCccEEeCCCCccC
Confidence            4444444444444333 2444444444444444444

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.48  E-value=2.3e-12  Score=114.73  Aligned_cols=276  Identities=15%  Similarity=0.260  Sum_probs=165.5

Q ss_pred             hhhhcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc-cC
Q psy11652         21 NVQISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL-PK   95 (325)
Q Consensus        21 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l-~~   95 (325)
                      .+..+|.+|+.+++.. .++.++..+| ..+ .+|+.+++.++ ++.++  +|.+|..|+.+.+..+ +..+  .+| -.
T Consensus        65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF-~~c-~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~  139 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPS-TVREIGEFAF-ENC-SKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC  139 (394)
T ss_dssp             TTTTTCTTEEEEECCT-TCCEECTTTT-TTC-TTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred             HHhhCCCCceEEEeCC-CccCcchhHh-hCC-CCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence            3455777777777763 4777777666 555 67777777643 55555  6777777776666432 2222  333 12


Q ss_pred             CccEEEeecC-cccchhhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccC
Q psy11652         96 TMETLSVANN-YLVNYLELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSY  170 (325)
Q Consensus        96 ~L~~L~l~~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~  170 (325)
                      .+....+... ......++.++++|+.+.+..+. ..++   +..+.+|+.+.+..+ ++.+ ..+|.++..|+.+.+..
T Consensus       140 ~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~  217 (394)
T 4fs7_A          140 DFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN  217 (394)
T ss_dssp             CCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred             cccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence            2222222111 11111567777888888776442 3333   556677777777654 4444 55566666666666544


Q ss_pred             CcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCc--------------------CchH-hhh
Q psy11652        171 NQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT--------------------NINQ-CFR  229 (325)
Q Consensus       171 ~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~--------------------~~~~-~~~  229 (325)
                      + ...+....+...+++.+.+... ++.+....|..+. .++.+.+..+...                    .++. .+.
T Consensus       218 ~-~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~-~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~  294 (394)
T 4fs7_A          218 S-LYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCT-DLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFY  294 (394)
T ss_dssp             T-CCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCS-SCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTT
T ss_pred             C-ceEeehhhcccCCCceEEECCC-ceecccccccccc-cceeEEcCCCcceeeccccccccccceeccCceeecccccc
Confidence            3 2223333333455555555432 2222233344443 4444444332110                    1222 567


Q ss_pred             CCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcccccccccchhhhccc
Q psy11652        230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQ  307 (325)
Q Consensus       230 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~  307 (325)
                      .+.+|+.+.+..+ +..+....|.++.+|+.+++..+ ++.+..  |.+|++|+.+.+..+ ++.++...+.....+..+
T Consensus       295 ~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i  371 (394)
T 4fs7_A          295 GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKV  371 (394)
T ss_dssp             TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEE
T ss_pred             ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEE
Confidence            8888988888754 67777888999999999999654 777776  999999999999876 899999888777666666


Q ss_pred             cc
Q psy11652        308 NM  309 (325)
Q Consensus       308 ~~  309 (325)
                      .+
T Consensus       372 ~l  373 (394)
T 4fs7_A          372 EL  373 (394)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.43  E-value=3.9e-12  Score=113.33  Aligned_cols=255  Identities=13%  Similarity=0.185  Sum_probs=163.8

Q ss_pred             cchhhhhcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc------------------------cccC
Q psy11652         18 CSENVQISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE------------------------NLNG   73 (325)
Q Consensus        18 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------------------------~~~~   73 (325)
                      ....+..+|++|+.+++.++ ++.++...| ... ..|+.+.+..+ +..++                        +|.+
T Consensus        85 I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF-~~c-~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~  160 (394)
T 4fs7_A           85 IGEFAFENCSKLEIINIPDS-VKMIGRCTF-SGC-YALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGVTVIGDEAFAT  160 (394)
T ss_dssp             ECTTTTTTCTTCCEECCCTT-CCEECTTTT-TTC-TTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTCCEECTTTTTT
T ss_pred             cchhHhhCCCCCcEEEeCCC-ceEccchhh-ccc-ccchhhcccCc-eeeecceeeecccccccccCccccccchhhhcc
Confidence            34456678999999999754 888888777 655 77777766533 22222                        4555


Q ss_pred             CCCccEEEccCCCCccc--ccc--cCCccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec-CCCCCCccEEEcc
Q psy11652         74 FRSILWLNMDSNLLQTL--DSL--PKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLS  146 (325)
Q Consensus        74 ~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~  146 (325)
                      |.+|+.+.+..+ +..+  ..|  +.+|+.+.+..+ +..+  .++.++..|+.+.+..+....-. .....+|+.+.+.
T Consensus       161 c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip  238 (394)
T 4fs7_A          161 CESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIP  238 (394)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEEC
T ss_pred             cCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEEC
Confidence            555555555432 2222  233  455555555443 2222  44555555555544433222111 2344566666665


Q ss_pred             CCccccc-hhhccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCc
Q psy11652        147 NNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI  224 (325)
Q Consensus       147 ~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~  224 (325)
                      .. ++.+ ...|.++..++.+.+..+ ...+....+.. ..++.+......+   +...|..+. +|+.+.+..+ +..+
T Consensus       239 ~~-~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~-~L~~i~l~~~-i~~I  311 (394)
T 4fs7_A          239 DS-FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCS-SLTEVKLLDS-VKFI  311 (394)
T ss_dssp             TT-CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEE---CTTTTTTCT-TCCEEEECTT-CCEE
T ss_pred             CC-ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCceee---ccccccccc-cccccccccc-ccee
Confidence            43 2333 456777888888888765 33444444444 7777777665443   344677787 9999998764 5555


Q ss_pred             hH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCC
Q psy11652        225 NQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGY  287 (325)
Q Consensus       225 ~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~  287 (325)
                      +. +|..|.+|+.+.+..+ ++.+....|.+|.+|+.+.+..+ ++.++.  |.+|++|+.+++..
T Consensus       312 ~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          312 GEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             chhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            54 7889999999999754 77888889999999999999776 777776  99999999999864

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.41  E-value=2.4e-11  Score=108.16  Aligned_cols=256  Identities=13%  Similarity=0.242  Sum_probs=134.4

Q ss_pred             hhhccc-ccceEEcCCCceeeecCCCcCcccccCccEEECCCC---cccccc--cccCCCCccEEEccCCCCccc--ccc
Q psy11652         22 VQISCI-LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGEN---HIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL   93 (325)
Q Consensus        22 ~~~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~---~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l   93 (325)
                      +..+|+ .|+.+.+..+ ++.++..+| ... .+|+.+.+..+   .++.++  +|.+|.+|+.+.+..+ +..+  ..|
T Consensus        58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF-~~C-~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF  133 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT-VTEIGSNAF-YNC-TSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF  133 (394)
T ss_dssp             TTTTCCSCCCEEEECTT-CCEECTTTT-TTC-TTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred             hccCCCCcCEEEEECCC-eeEEhHHHh-hCC-ccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence            344564 4777777643 777777677 555 77777777654   255555  6777777777666543 3334  444


Q ss_pred             --cCCccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec--CCCCCCccEEEccCCccccchhhccCCCCccEEE
Q psy11652         94 --PKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV--IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLI  167 (325)
Q Consensus        94 --~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  167 (325)
                        +.+|+.+.+..+ +..+  ..+..+..|+.+.+..+ ++.+.  .....+|+.+.+..+....-..+|.++.+++...
T Consensus       134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~  211 (394)
T 4gt6_A          134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTIT  211 (394)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEE
T ss_pred             hhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceec
Confidence              677777777543 2233  56777777777777543 33333  2234567777776543222245566666666555


Q ss_pred             ccCCcCc------------------------------------ccccCccCC-ccccEEEcccCCCcccChhhhhCcccc
Q psy11652        168 LSYNQIS------------------------------------KLNANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNST  210 (325)
Q Consensus       168 l~~~~l~------------------------------------~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~  210 (325)
                      .......                                    .+....+.. ..|+.+.+..+ +..+...+|..+. .
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~-~  289 (394)
T 4gt6_A          212 SDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCP-A  289 (394)
T ss_dssp             ECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCT-T
T ss_pred             ccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccc-cceecCccccccc-c
Confidence            4332221                                    112222222 44444444332 1223334444444 5


Q ss_pred             CCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCC
Q psy11652        211 LEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGY  287 (325)
Q Consensus       211 L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~  287 (325)
                      |+.+.+.. .+..++. .|.+|.+|+.+.+..+ ++.+....|.+|.+|+.+.+..+ ++.+..  |.+|++|+.+++.+
T Consensus       290 L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          290 LQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSG  366 (394)
T ss_dssp             CCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESS
T ss_pred             cccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECC
Confidence            55555432 2333332 4555555555555432 44444455555555555555332 444443  55555555555554


Q ss_pred             C
Q psy11652        288 N  288 (325)
Q Consensus       288 n  288 (325)
                      +
T Consensus       367 ~  367 (394)
T 4gt6_A          367 S  367 (394)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.39  E-value=6.9e-15  Score=118.37  Aligned_cols=135  Identities=25%  Similarity=0.244  Sum_probs=84.5

Q ss_pred             cchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCC
Q psy11652        152 TINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNL  231 (325)
Q Consensus       152 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~  231 (325)
                      .++..+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.++ ..+..++ +|+.|++++|.+..+| .+..+
T Consensus        39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~-~L~~L~L~~N~l~~l~-~~~~l  114 (198)
T 1ds9_A           39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIE-NLDAVAD-TLEELWISYNQIASLS-GIEKL  114 (198)
T ss_dssp             CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCS-SHHHHHH-HCSEEEEEEEECCCHH-HHHHH
T ss_pred             hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccccc-chhhcCC-cCCEEECcCCcCCcCC-ccccC
Confidence            33445666777777777777666655 3434467777777777666554 2444455 7777777777776665 46666


Q ss_pred             CCCCEEeCCCCccccccc-chhccCccCCEEEccCCCCccc-CC-----------CCCCCCCCEEECCCCcCcc
Q psy11652        232 KKLKYLYLHNNNIEFIQN-NTFEHLVNLKSISLSGNKLTRI-PD-----------FIHNKRLSHLNLGYNFLNE  292 (325)
Q Consensus       232 ~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~l~~l-~~-----------~~~~~~L~~L~l~~n~i~~  292 (325)
                      ++|++|++++|.++.++. ..+..+++|+.|++++|.+... |.           +..+++|+.|+  +++++.
T Consensus       115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            777777777777665443 3556667777777777766522 11           45667777765  555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.38  E-value=2.6e-12  Score=100.59  Aligned_cols=107  Identities=25%  Similarity=0.315  Sum_probs=75.9

Q ss_pred             cccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCc-hHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEc
Q psy11652        185 NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISL  263 (325)
Q Consensus       185 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l  263 (325)
                      ..+.++++++.++.++...    +.+++.|++++|.+..+ +..+..+++|++|++++|+++++++..+.++++|+.|++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~----~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI----PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcCccCccC----CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            3456666666666654321    22677777777777765 345677777778888877777777766777788888888


Q ss_pred             cCCCCcccCC--CCCCCCCCEEECCCCcCccccc
Q psy11652        264 SGNKLTRIPD--FIHNKRLSHLNLGYNFLNELIL  295 (325)
Q Consensus       264 ~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~  295 (325)
                      ++|+++.+++  +..+++|+.|++++|+++....
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            8888887765  7777888888888888776654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.37  E-value=3.9e-12  Score=99.92  Aligned_cols=105  Identities=25%  Similarity=0.347  Sum_probs=70.2

Q ss_pred             cEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCch-HhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccC
Q psy11652        187 FRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSG  265 (325)
Q Consensus       187 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~  265 (325)
                      +.++++++.++.++.. +   +++++.|++++|.+..++ ..+..+++|++|++++|+++++++..+..+++|+.|++++
T Consensus        15 ~~l~~~~n~l~~iP~~-~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAG-I---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCSSCCSC-C---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCCccCCC-c---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            4566666666555431 1   126677777777666553 3566677777777777777777666666777777777777


Q ss_pred             CCCcccCC--CCCCCCCCEEECCCCcCccccc
Q psy11652        266 NKLTRIPD--FIHNKRLSHLNLGYNFLNELIL  295 (325)
Q Consensus       266 n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~  295 (325)
                      |.++.+|+  +..+++|+.|++++|++...+.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            77777665  6777777777777777776654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.36  E-value=4.2e-12  Score=99.37  Aligned_cols=104  Identities=28%  Similarity=0.351  Sum_probs=76.5

Q ss_pred             ccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCC
Q psy11652        163 IKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHN  241 (325)
Q Consensus       163 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~  241 (325)
                      .+.++++++.++.++..+.  ++++.|++++|.++++++..|..++ +|+.|++++|.+..++. .|..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            4567777777777665442  6777777777777777777777777 78888888777776665 456777788888888


Q ss_pred             CcccccccchhccCccCCEEEccCCCCc
Q psy11652        242 NNIEFIQNNTFEHLVNLKSISLSGNKLT  269 (325)
Q Consensus       242 ~~l~~~~~~~l~~~~~L~~L~l~~n~l~  269 (325)
                      |.++++++..+..+++|+.|++++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            8777777766777778888888887776

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.35  E-value=4.8e-14  Score=113.39  Aligned_cols=129  Identities=26%  Similarity=0.332  Sum_probs=94.5

Q ss_pred             CCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEE
Q psy11652        135 PNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFL  214 (325)
Q Consensus       135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L  214 (325)
                      ..+++|++|++++|.++.++ .+.++++|+.|++++|.++.++......++|+.|++++|.+++++  .+..++ +|+.|
T Consensus        45 ~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~-~L~~L  120 (198)
T 1ds9_A           45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS--GIEKLV-NLRVL  120 (198)
T ss_dssp             HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH--HHHHHH-HSSEE
T ss_pred             hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC--ccccCC-CCCEE
Confidence            35666777777777666665 667777888888888877776654433478888888888887753  577777 88888


Q ss_pred             EccCCCCcCchH--hhhCCCCCCEEeCCCCccccccc----------chhccCccCCEEEccCCCCc
Q psy11652        215 DLENNRLTNINQ--CFRNLKKLKYLYLHNNNIEFIQN----------NTFEHLVNLKSISLSGNKLT  269 (325)
Q Consensus       215 ~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~l~~~~~----------~~l~~~~~L~~L~l~~n~l~  269 (325)
                      ++++|.+..++.  .+..+++|++|++++|.+.+..+          ..+..+++|+.|+  ++.++
T Consensus       121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            888888887665  67888889999998888765433          2367788888886  55554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.33  E-value=6.9e-12  Score=98.49  Aligned_cols=106  Identities=25%  Similarity=0.320  Sum_probs=78.9

Q ss_pred             cEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCC
Q psy11652        164 KDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNN  242 (325)
Q Consensus       164 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~  242 (325)
                      +.++++++.++.+|..+.  ++++.|++++|.++++++..|..++ +|+.|++++|.+..+|. .|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            567777777777766443  6777788888877777777777777 78888888888777765 4567788888888888


Q ss_pred             cccccccchhccCccCCEEEccCCCCcccC
Q psy11652        243 NIEFIQNNTFEHLVNLKSISLSGNKLTRIP  272 (325)
Q Consensus       243 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~  272 (325)
                      .++.+++..+..+++|+.|++++|.+...+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            888777766777788888888888777433

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.32  E-value=9.8e-11  Score=104.20  Aligned_cols=261  Identities=14%  Similarity=0.264  Sum_probs=164.3

Q ss_pred             cchhhhhcccccceEEcCCC---ceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--
Q psy11652         18 CSENVQISCILLMSAENEDN---QIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--   90 (325)
Q Consensus        18 ~~~~~~~~~~~L~~L~l~~~---~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--   90 (325)
                      ....+..+|++|+.+.+..+   .++.++..+| ... ..|+.+.+..+ +..++  +|.+|.+|+.+.+... +..+  
T Consensus        78 Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF-~~c-~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~  153 (394)
T 4gt6_A           78 IGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAF-MFC-SELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVAD  153 (394)
T ss_dssp             ECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTT-TTC-TTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred             EhHHHhhCCccCceEeecCCCCCeeeEechhhc-hhc-ccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecc
Confidence            33456678999999999765   4778888777 555 77887777543 55555  6777888888887543 2223  


Q ss_pred             ccc--cCCccEEEeecCcccch------------------------hhhccCCCCCEEEccCCcceeec-----------
Q psy11652         91 DSL--PKTMETLSVANNYLVNY------------------------LELNRMTSLKWIVLSNNYIKEFV-----------  133 (325)
Q Consensus        91 ~~l--~~~L~~L~l~~~~l~~~------------------------~~~~~~~~L~~L~l~~~~~~~~~-----------  133 (325)
                      ..|  +..|+.+.+..+ +..+                        .++..+..++...........+.           
T Consensus       154 ~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~  232 (394)
T 4gt6_A          154 GMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGD  232 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSC
T ss_pred             cceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceecccccccccccceeeccccccc
Confidence            333  556666665443 2222                        23333333333332221111000           


Q ss_pred             -----CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCCcccChhhhhC
Q psy11652        134 -----IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKISEIHDFAFNG  206 (325)
Q Consensus       134 -----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~  206 (325)
                           ......+..+.+.. .++.+ ..+|.++..|+.+.+... +..+....+.. ..|+.+.+. +.++.+...+|.+
T Consensus       233 ~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~  309 (394)
T 4gt6_A          233 YALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAG  309 (394)
T ss_dssp             EEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTT
T ss_pred             ccccccccccccceEEcCC-cceEcccceeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecC
Confidence                 01122233333322 23334 567899999999999765 44566656555 899999996 4677788889999


Q ss_pred             ccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCCCCCCCCCCEEEC
Q psy11652        207 LNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNL  285 (325)
Q Consensus       207 ~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l  285 (325)
                      +. +|+.+.+..+ +..+.. +|.+|.+|+.+.+..+ ++.+....|.+|.+|+.+++.++... +..+..+.+|+.+.+
T Consensus       310 c~-~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~~~~~~~~~L~~i~i  385 (394)
T 4gt6_A          310 CI-SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-WNAISTDSGLQNLPV  385 (394)
T ss_dssp             CT-TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-HHTCBCCCCC-----
T ss_pred             CC-CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-hhhhhccCCCCEEEe
Confidence            98 9999999764 555554 7999999999999755 77888889999999999999887543 223667888999888


Q ss_pred             CCCcC
Q psy11652        286 GYNFL  290 (325)
Q Consensus       286 ~~n~i  290 (325)
                      ..+.+
T Consensus       386 ~~~~~  390 (394)
T 4gt6_A          386 APGSI  390 (394)
T ss_dssp             -----
T ss_pred             CCCCE
Confidence            76543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=7.8e-13  Score=116.60  Aligned_cols=153  Identities=15%  Similarity=0.165  Sum_probs=99.8

Q ss_pred             CCCCCEEEccCCcceeec--------CCCCCCccEEEccCCccccc--hhhccCCCCccEEEccCCcCcccccCcc----
Q psy11652        116 MTSLKWIVLSNNYIKEFV--------IPNRKHIEKLDLSNNLISTI--NLNLNNTYYIKDLILSYNQISKLNANTF----  181 (325)
Q Consensus       116 ~~~L~~L~l~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~----  181 (325)
                      .+.|+.|++++|.++...        .....+|++|++++|.++..  ......+++|+.|++++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            467888888888876322        12346888888888887654  2223345678888888887763222111    


Q ss_pred             --CCccccEEEcccCCCcccChh----hhhCccccCCEEEccCCCCcC-----chHhhhCCCCCCEEeCCCCccccccc-
Q psy11652        182 --RNLNVFRLYLKFNKISEIHDF----AFNGLNSTLEFLDLENNRLTN-----INQCFRNLKKLKYLYLHNNNIEFIQN-  249 (325)
Q Consensus       182 --~~~~L~~L~l~~~~l~~~~~~----~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~-  249 (325)
                        ..++|+.|++++|.++.....    .+...+ +|++|++++|.++.     ++..+..+++|+.|++++|.++.... 
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~-~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT-SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCS-SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCC-CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence              236788888888887653322    335566 78888888887763     23356667778888888887775322 


Q ss_pred             ---chhccCccCCEEEccCCCCc
Q psy11652        250 ---NTFEHLVNLKSISLSGNKLT  269 (325)
Q Consensus       250 ---~~l~~~~~L~~L~l~~n~l~  269 (325)
                         ..+...++|+.|++++|.++
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHHhCCCCCEEeccCCCCC
Confidence               23344577888888888877

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.28  E-value=1.1e-09  Score=96.88  Aligned_cols=263  Identities=13%  Similarity=0.172  Sum_probs=162.4

Q ss_pred             cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc-cCCccE
Q psy11652         25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL-PKTMET   99 (325)
Q Consensus        25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l-~~~L~~   99 (325)
                      .+.+|+.+.+. ..++.++..+| ..+ .+|+.+.|..+ ++.++  +|.+| +|+.+.+..+ +..+  .+| ..+|+.
T Consensus        44 ~~~~i~~v~ip-~~vt~Ig~~aF-~~C-~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~  117 (379)
T 4h09_A           44 DRDRISEVRVN-SGITSIGEANF-NSC-YNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDD  117 (379)
T ss_dssp             GGGGCSEEEEC-TTEEEECTTTT-TTC-TTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSE
T ss_pred             cccCCEEEEeC-CCccChHHHHh-hCC-CCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCccc
Confidence            56678888886 45888888777 665 78888888644 66666  77777 5666766432 4444  444 456777


Q ss_pred             EEeecCcccch--hh----------------------hccCCCCCEEEccCCcceee---------------cCCCCCCc
Q psy11652        100 LSVANNYLVNY--LE----------------------LNRMTSLKWIVLSNNYIKEF---------------VIPNRKHI  140 (325)
Q Consensus       100 L~l~~~~l~~~--~~----------------------~~~~~~L~~L~l~~~~~~~~---------------~~~~~~~L  140 (325)
                      +.+..+. ..+  ..                      +..+..++.+.+........               .......+
T Consensus       118 i~lp~~~-~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (379)
T 4h09_A          118 FEFPGAT-TEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTG  196 (379)
T ss_dssp             EECCTTC-CEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCC
T ss_pred             ccCCCcc-ccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceeccccccccc
Confidence            7765431 111  22                      23333333333322111000               01122233


Q ss_pred             cEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCCcccChhhhhCccccCCEEEccCC
Q psy11652        141 EKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENN  219 (325)
Q Consensus       141 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~  219 (325)
                      ..+.+...........+..+.+++.+.+..+ +..+....+.. ..|+.+.+..+ ++.+...+|..+. +++.+.+..+
T Consensus       197 ~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~-~l~~i~l~~~  273 (379)
T 4h09_A          197 TEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCT-ALKTLNFYAK  273 (379)
T ss_dssp             SEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCT-TCCEEEECCC
T ss_pred             cccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceee-hhcccccccc
Confidence            3333332221111344566677777777554 45555544444 78888888764 6666667777777 8888887653


Q ss_pred             CCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcccccc
Q psy11652        220 RLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILE  296 (325)
Q Consensus       220 ~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~  296 (325)
                       +..++. .|..|.+|+.+.+.++.++.+....|.+|.+|+.+.+..+ ++.+..  |.+|++|+.+.+..+ ++.|...
T Consensus       274 -i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~  350 (379)
T 4h09_A          274 -VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESG  350 (379)
T ss_dssp             -CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred             -ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchh
Confidence             444443 6788888888888888888888888888888888888644 666765  888888888888643 7777766


Q ss_pred             cccc
Q psy11652        297 SSIV  300 (325)
Q Consensus       297 ~~~~  300 (325)
                      .+..
T Consensus       351 aF~~  354 (379)
T 4h09_A          351 AFEG  354 (379)
T ss_dssp             TTTT
T ss_pred             HhhC
Confidence            6544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.23  E-value=1.8e-12  Score=114.23  Aligned_cols=159  Identities=18%  Similarity=0.165  Sum_probs=88.0

Q ss_pred             cCCccEEEeecCcccch--h----hhc-cCCCCCEEEccCCcceee--c--CCCCCCccEEEccCCccccc-hhh----c
Q psy11652         94 PKTMETLSVANNYLVNY--L----ELN-RMTSLKWIVLSNNYIKEF--V--IPNRKHIEKLDLSNNLISTI-NLN----L  157 (325)
Q Consensus        94 ~~~L~~L~l~~~~l~~~--~----~~~-~~~~L~~L~l~~~~~~~~--~--~~~~~~L~~L~l~~~~~~~~-~~~----~  157 (325)
                      .+.|+.|++++|.++..  .    .+. ..++|++|++++|.++..  .  ...+.+|++|++++|.++.. ...    +
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            45556666665555443  1    111 124566666666655421  1  11234566666666666543 222    2


Q ss_pred             -cCCCCccEEEccCCcCcc-----cccCccCCccccEEEcccCCCcccC----hhhhhCccccCCEEEccCCCCcC----
Q psy11652        158 -NNTYYIKDLILSYNQISK-----LNANTFRNLNVFRLYLKFNKISEIH----DFAFNGLNSTLEFLDLENNRLTN----  223 (325)
Q Consensus       158 -~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~l~~~~----~~~~~~~~~~L~~L~l~~~~l~~----  223 (325)
                       ...++|+.|++++|.++.     +...+...++|++|++++|.+++..    ...+...+ +|+.|++++|.++.    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~-~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR-QLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS-CCCEEECCSSCCCHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC-CcCeEECCCCCCCHHHHH
Confidence             235566777777666653     2222223466777777777766433    23444555 78888888887763    


Q ss_pred             -chHhhhCCCCCCEEeCCCCcccccccchhc
Q psy11652        224 -INQCFRNLKKLKYLYLHNNNIEFIQNNTFE  253 (325)
Q Consensus       224 -~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~  253 (325)
                       ++..+..+++|++|++++|.++......+.
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence             333455677888888888887754443343

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.18  E-value=1.1e-08  Score=90.30  Aligned_cols=247  Identities=14%  Similarity=0.238  Sum_probs=166.2

Q ss_pred             ccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc-cCCccEEEeecCcccch--hhhccCCCCCEEEc
Q psy11652         52 QNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL-PKTMETLSVANNYLVNY--LELNRMTSLKWIVL  124 (325)
Q Consensus        52 ~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l-~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l  124 (325)
                      ..+|+.+.+.. .++.++  +|.+|.+|+.+.+..+ +..+  .+| -.+|+.+.+..+ +..+  .++.. .+|+.+.+
T Consensus        45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~l  120 (379)
T 4h09_A           45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADTKLQSYTGMER-VKKFGDYVFQG-TDLDDFEF  120 (379)
T ss_dssp             GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCCCCEEEECTT-CCEECTTTTTT-CCCSEEEC
T ss_pred             ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCCCCceEECCce-eeEeccceecc-CCcccccC
Confidence            37899999974 478887  9999999999999754 6666  566 447888887654 4444  45554 47999988


Q ss_pred             cCCcceeec--CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCc-----------------------------
Q psy11652        125 SNNYIKEFV--IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQ-----------------------------  172 (325)
Q Consensus       125 ~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~-----------------------------  172 (325)
                      ..+ +..+.  .....+++.+.+..+ ++.+ ...|..+.+++.+.+....                             
T Consensus       121 p~~-~~~i~~~~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (379)
T 4h09_A          121 PGA-TTEIGNYIFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTE  198 (379)
T ss_dssp             CTT-CCEECTTTTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSE
T ss_pred             CCc-cccccccccccceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccc
Confidence            654 22222  222234555544332 2222 3344444544444443221                             


Q ss_pred             ------CcccccCccC-CccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcc
Q psy11652        173 ------ISKLNANTFR-NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNI  244 (325)
Q Consensus       173 ------l~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l  244 (325)
                            ...+....+. ...++.+.+..+ +..+...+|..+. .|+.+.+..+ +..+.. .+..+.+|+.+.+..+ +
T Consensus       199 ~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~-~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i  274 (379)
T 4h09_A          199 FTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMK-ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-V  274 (379)
T ss_dssp             EECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCS-SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-C
T ss_pred             cccccceeEEeecccccccccceeeeccc-eeEEccccccCCc-cceEEEcCCC-ccEeCccccceeehhcccccccc-c
Confidence                  1112222222 256667766543 4555566777777 8999988765 454543 6788999999998654 6


Q ss_pred             cccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcccccccccchhhhccccc
Q psy11652        245 EFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNM  309 (325)
Q Consensus       245 ~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~  309 (325)
                      ..+....|.++.+|+.+.+.++.++.++.  |.+|.+|+.+.+.. .++.|....+.....+..+.+
T Consensus       275 ~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          275 KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCC
T ss_pred             eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEE
Confidence            67777789999999999999999998887  99999999999975 488999988877777666665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.11  E-value=3.1e-10  Score=99.18  Aligned_cols=102  Identities=24%  Similarity=0.304  Sum_probs=57.3

Q ss_pred             EEEccCC-cCcccccCccCCccccEEEccc-CCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCC
Q psy11652        165 DLILSYN-QISKLNANTFRNLNVFRLYLKF-NKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHN  241 (325)
Q Consensus       165 ~L~l~~~-~l~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~  241 (325)
                      .+++.++ .++.+|. +...++|+.|++++ |.++.+++..|..++ +|+.|++++|.+..++. .|..+++|+.|++++
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3455555 5666555 44445666666664 666666555555555 66666666665554433 455556666666666


Q ss_pred             CcccccccchhccCccCCEEEccCCCCc
Q psy11652        242 NNIEFIQNNTFEHLVNLKSISLSGNKLT  269 (325)
Q Consensus       242 ~~l~~~~~~~l~~~~~L~~L~l~~n~l~  269 (325)
                      |.++++++..+..++ |+.|++.+|.+.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            665555554444433 555666555555

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.08  E-value=3e-10  Score=99.27  Aligned_cols=105  Identities=23%  Similarity=0.275  Sum_probs=91.5

Q ss_pred             cEEEcccC-CCcccChhhhhCccccCCEEEccC-CCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEc
Q psy11652        187 FRLYLKFN-KISEIHDFAFNGLNSTLEFLDLEN-NRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISL  263 (325)
Q Consensus       187 ~~L~l~~~-~l~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l  263 (325)
                      ..++++++ .++.++.  +..+. +|+.|++++ |.+..++. .|..+++|+.|++++|.++++++..|.++++|+.|+|
T Consensus        11 ~~v~~~~~n~l~~ip~--l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH--LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCTTTTT--SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCCccCC--CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            45788887 8888765  77887 999999996 99998774 7899999999999999999999989999999999999


Q ss_pred             cCCCCcccCC--CCCCCCCCEEECCCCcCccccc
Q psy11652        264 SGNKLTRIPD--FIHNKRLSHLNLGYNFLNELIL  295 (325)
Q Consensus       264 ~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~  295 (325)
                      ++|+++.+|+  +..++ |+.|++.+|++.....
T Consensus        88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             CCCccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence            9999999987  55554 9999999999986543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.85  E-value=3.6e-09  Score=92.58  Aligned_cols=138  Identities=19%  Similarity=0.220  Sum_probs=91.0

Q ss_pred             hhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhh--CccccCCEEEccCC--C------CcC
Q psy11652        154 NLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFN--GLNSTLEFLDLENN--R------LTN  223 (325)
Q Consensus       154 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~--~~~~~L~~L~l~~~--~------l~~  223 (325)
                      ...+..+|+|+.|.+.++.-..++.  ...++|+.|++..+.++......+.  .+| +|+.|+++.+  .      +..
T Consensus       165 ~~ll~~~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp-~L~~L~L~~~~~~~~~~~~~~~  241 (362)
T 2ra8_A          165 SPVLDAMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDSVVEDILGSDLP-NLEKLVLYVGVEDYGFDGDMNV  241 (362)
T ss_dssp             HHHHHTCTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCHHHHHHHHHSBCT-TCCEEEEECBCGGGTCCSCGGG
T ss_pred             HHHHhcCCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCChHHHHHHHHccCC-CCcEEEEeccccccccchhHHH
Confidence            3445667888888887763122332  2368899999988877654444444  567 8999988531  1      112


Q ss_pred             chHhh--hCCCCCCEEeCCCCcccccccchh---ccCccCCEEEccCCCCcc-----cCC-CCCCCCCCEEECCCCcCcc
Q psy11652        224 INQCF--RNLKKLKYLYLHNNNIEFIQNNTF---EHLVNLKSISLSGNKLTR-----IPD-FIHNKRLSHLNLGYNFLNE  292 (325)
Q Consensus       224 ~~~~~--~~~~~L~~L~l~~~~l~~~~~~~l---~~~~~L~~L~l~~n~l~~-----l~~-~~~~~~L~~L~l~~n~i~~  292 (325)
                      +...+  ..+++|++|++.+|.++......+   +.+++|+.|+++.|.++.     ++. +.++++|+.|++++|.|+.
T Consensus       242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            22222  357899999999888764222122   246899999999998884     333 4567899999999998775


Q ss_pred             cc
Q psy11652        293 LI  294 (325)
Q Consensus       293 ~~  294 (325)
                      ..
T Consensus       322 ~~  323 (362)
T 2ra8_A          322 EM  323 (362)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.75  E-value=4.1e-08  Score=85.86  Aligned_cols=59  Identities=12%  Similarity=0.139  Sum_probs=32.6

Q ss_pred             hhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccc-hhhc--cCCCCccEEEcc
Q psy11652        111 LELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNL--NNTYYIKDLILS  169 (325)
Q Consensus       111 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~--~~~~~L~~L~l~  169 (325)
                      ..+..+|.|+.|.++++.-..++....++|++|++..+.+... ...+  ..+++|+.|+++
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            3445566677777665521122322366777777776665443 2222  356777777764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.50  E-value=7.7e-08  Score=75.98  Aligned_cols=83  Identities=13%  Similarity=0.187  Sum_probs=44.0

Q ss_pred             cCCEEEccCCCCcC-----chHhhhCCCCCCEEeCCCCcccccc----cchhccCccCCEEEc--cCCCCcc-----cCC
Q psy11652        210 TLEFLDLENNRLTN-----INQCFRNLKKLKYLYLHNNNIEFIQ----NNTFEHLVNLKSISL--SGNKLTR-----IPD  273 (325)
Q Consensus       210 ~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~L~l--~~n~l~~-----l~~  273 (325)
                      +|++|++++|.++.     +...+...++|++|++++|.++...    ...+...++|+.|++  ++|.++.     +..
T Consensus        66 ~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~  145 (185)
T 1io0_A           66 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN  145 (185)
T ss_dssp             SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH
T ss_pred             CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH
Confidence            55555555555541     2223444455666666666555321    123344456666666  5566652     222


Q ss_pred             -CCCCCCCCEEECCCCcCcc
Q psy11652        274 -FIHNKRLSHLNLGYNFLNE  292 (325)
Q Consensus       274 -~~~~~~L~~L~l~~n~i~~  292 (325)
                       +...++|++|++++|.+..
T Consensus       146 ~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          146 MLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHCSSCCEEECCCSSHHH
T ss_pred             HHHhCCCcCEEeccCCCCCh
Confidence             4555677777777776653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.45  E-value=9.2e-08  Score=75.53  Aligned_cols=115  Identities=15%  Similarity=0.078  Sum_probs=82.2

Q ss_pred             hhhccCCCCccEEEccCC-cCcc-----cccCccCCccccEEEcccCCCcccCh----hhhhCccccCCEEEccCCCCcC
Q psy11652        154 NLNLNNTYYIKDLILSYN-QISK-----LNANTFRNLNVFRLYLKFNKISEIHD----FAFNGLNSTLEFLDLENNRLTN  223 (325)
Q Consensus       154 ~~~~~~~~~L~~L~l~~~-~l~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~~L~~L~l~~~~l~~  223 (325)
                      ...+...+.|++|++++| .+..     +...+...+.|++|++++|.++....    ..+...+ +|++|++++|.++.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i~~  107 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCCCH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC-CcCEEECcCCcCCH
Confidence            455777888999999988 7762     33333344789999999998876433    3334445 89999999998873


Q ss_pred             -----chHhhhCCCCCCEEeC--CCCcccccc----cchhccCccCCEEEccCCCCc
Q psy11652        224 -----INQCFRNLKKLKYLYL--HNNNIEFIQ----NNTFEHLVNLKSISLSGNKLT  269 (325)
Q Consensus       224 -----~~~~~~~~~~L~~L~l--~~~~l~~~~----~~~l~~~~~L~~L~l~~n~l~  269 (325)
                           +...+...++|++|++  ++|.++...    ...+...++|+.|++++|.+.
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence                 3446777788999999  788887532    234455678999999888775

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.10  E-value=2.6e-06  Score=65.88  Aligned_cols=76  Identities=16%  Similarity=0.270  Sum_probs=54.8

Q ss_pred             cCccEEECCCCcccccc--cccCCCCccEEEccCCC-Cccc--ccc------cCCccEEEeecCc-ccch--hhhccCCC
Q psy11652         53 NKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNL-LQTL--DSL------PKTMETLSVANNY-LVNY--LELNRMTS  118 (325)
Q Consensus        53 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~-~~~~--~~l------~~~L~~L~l~~~~-l~~~--~~~~~~~~  118 (325)
                      ..|+.|++++|.+++..  .+.+|++|++|++++|. +++.  ..+      .++|++|++++|. ++..  ..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            37888888888877655  67788888888888885 5544  333      2468888888874 5554  66677788


Q ss_pred             CCEEEccCCc
Q psy11652        119 LKWIVLSNNY  128 (325)
Q Consensus       119 L~~L~l~~~~  128 (325)
                      |+.|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            8888887764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.94  E-value=9.7e-06  Score=62.68  Aligned_cols=34  Identities=18%  Similarity=0.054  Sum_probs=13.4

Q ss_pred             cccEEEcccCCCcccChhhhhCccccCCEEEccCC
Q psy11652        185 NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENN  219 (325)
Q Consensus       185 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~  219 (325)
                      +|+.|+++++.++......+.+++ +|+.|++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~-~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQ-YVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCS-CCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCC-CCCEEEeCCC
Confidence            344444444444333333333333 4444444443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.90  E-value=4.6e-06  Score=69.36  Aligned_cols=64  Identities=31%  Similarity=0.371  Sum_probs=38.0

Q ss_pred             hCCCCCCEEeCCCCccccccc--chhccCccCCEEEccCCCCcccCCCCCCC--CCCEEECCCCcCcc
Q psy11652        229 RNLKKLKYLYLHNNNIEFIQN--NTFEHLVNLKSISLSGNKLTRIPDFIHNK--RLSHLNLGYNFLNE  292 (325)
Q Consensus       229 ~~~~~L~~L~l~~~~l~~~~~--~~l~~~~~L~~L~l~~n~l~~l~~~~~~~--~L~~L~l~~n~i~~  292 (325)
                      ..+++|+.|++++|.++++..  ..+..+++|+.|+|++|.+..+..+..+.  +|++|++++|++..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCcc
Confidence            345666666666666665432  33445666777777777666553322222  67777777777654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.76  E-value=3.1e-05  Score=64.36  Aligned_cols=76  Identities=26%  Similarity=0.386  Sum_probs=49.9

Q ss_pred             CccccCCEEEccCCCCcCch---HhhhCCCCCCEEeCCCCcccccccchhccCc--cCCEEEccCCCCc-ccCC------
Q psy11652        206 GLNSTLEFLDLENNRLTNIN---QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLV--NLKSISLSGNKLT-RIPD------  273 (325)
Q Consensus       206 ~~~~~L~~L~l~~~~l~~~~---~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~--~L~~L~l~~n~l~-~l~~------  273 (325)
                      .++ +|+.|++++|.+..++   ..+..+++|+.|++++|.+.++..  +..+.  +|+.|++++|.+. .+|.      
T Consensus       168 ~l~-~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~--l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          168 NIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE--LDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HCT-TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG--GGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hCC-CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh--hhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            455 7777888777776543   355677788888888887776522  33333  7788888888776 3431      


Q ss_pred             --CCCCCCCCEEE
Q psy11652        274 --FIHNKRLSHLN  284 (325)
Q Consensus       274 --~~~~~~L~~L~  284 (325)
                        +..+++|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence              45667777764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.41  E-value=0.00018  Score=56.67  Aligned_cols=106  Identities=10%  Similarity=0.084  Sum_probs=59.0

Q ss_pred             ccccEEEcccC-CCcccC----hhhhhCccccCCEEEccCCCCc-----CchHhhhCCCCCCEEeCCCCccccccc----
Q psy11652        184 LNVFRLYLKFN-KISEIH----DFAFNGLNSTLEFLDLENNRLT-----NINQCFRNLKKLKYLYLHNNNIEFIQN----  249 (325)
Q Consensus       184 ~~L~~L~l~~~-~l~~~~----~~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~l~~~~~----  249 (325)
                      +.|+.|+++++ .++...    ...+.... .|+.|++++|.++     .+...+...+.|+.|++++|.++....    
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~-~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCC-CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            45555555553 444321    23333444 6677777776665     334455566677777777777664222    


Q ss_pred             chhccCccCCEEEccCC---CCc-----ccCC-CCCCCCCCEEECCCCcC
Q psy11652        250 NTFEHLVNLKSISLSGN---KLT-----RIPD-FIHNKRLSHLNLGYNFL  290 (325)
Q Consensus       250 ~~l~~~~~L~~L~l~~n---~l~-----~l~~-~~~~~~L~~L~l~~n~i  290 (325)
                      ..+..-+.|+.|+|+++   .+.     .+.. +...++|+.|+++.|.+
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            12333356777777654   333     1222 55667788888876654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.24  E-value=0.00039  Score=54.73  Aligned_cols=20  Identities=5%  Similarity=0.024  Sum_probs=9.5

Q ss_pred             ccCCCCccEEEccCCCCccc
Q psy11652         71 LNGFRSILWLNMDSNLLQTL   90 (325)
Q Consensus        71 ~~~~~~L~~L~l~~~~~~~~   90 (325)
                      +..-..|+.|++++|.+.+.
T Consensus        66 L~~N~~L~~L~L~~n~igd~   85 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDS   85 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHH
T ss_pred             HhhCCCcCEEEccCCCCChH
Confidence            33444455555555544443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.13  E-value=0.00057  Score=50.11  Aligned_cols=54  Identities=13%  Similarity=0.203  Sum_probs=46.1

Q ss_pred             ceEEcCCCcee--eecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCc
Q psy11652         30 MSAENEDNQIA--ELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQ   88 (325)
Q Consensus        30 ~~L~l~~~~i~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~   88 (325)
                      ..++++++.++  .+|. .+    ++.|++|+|++|.|+.++  .|..+++|++|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~-~l----p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPT-AF----PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCS-CC----CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCC-CC----CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            58899999998  8887 44    468999999999999998  7888899999999988664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.70  E-value=0.0025  Score=46.65  Aligned_cols=35  Identities=23%  Similarity=0.309  Sum_probs=15.4

Q ss_pred             CCEEeCCCCcccccccchhccCccCCEEEccCCCC
Q psy11652        234 LKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL  268 (325)
Q Consensus       234 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l  268 (325)
                      ++.|++++|.++.++...|..+++|+.|+|++|.+
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            44444444444444444444444444444444433

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=80.41  E-value=1.4  Score=30.16  Aligned_cols=46  Identities=9%  Similarity=0.181  Sum_probs=26.2

Q ss_pred             CceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCC
Q psy11652         37 NQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSN   85 (325)
Q Consensus        37 ~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~   85 (325)
                      ..++.+....| ... ..|+.+.|..+ ++.+.  +|.+|.+|+.+.+.+.
T Consensus         6 ~~vt~I~~~aF-~~c-~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            6 EPVVGMDKSLF-AGN-TVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCSSCSCTT-TTC-TTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CccCEecHHHh-cCC-CCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            34555555555 444 56666666543 44444  6666666666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	325
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.8 bits (146), Expect = 5e-11
 Identities = 44/193 (22%), Positives = 92/193 (47%), Gaps = 9/193 (4%)

Query: 97  METLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEF-VIPNRKHIEKLDLSNNLISTINL 155
           +E+L   NN + +   L  +T+L  + L+ N +K+   + +  ++  LDL+NN IS +  
Sbjct: 199 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-A 257

Query: 156 NLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLD 215
            L+    + +L L  NQIS ++        +  L       +++ D +       L +L 
Sbjct: 258 PLSGLTKLTELKLGANQISNISPLA----GLTALTNLELNENQLEDISPISNLKNLTYLT 313

Query: 216 LENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFI 275
           L  N +++I+    +L KL+ L+  NN +  +  ++  +L N+  +S   N+++ +    
Sbjct: 314 LYFNNISDISP-VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 370

Query: 276 HNKRLSHLNLGYN 288
           +  R++ L L   
Sbjct: 371 NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 48/216 (22%), Positives = 80/216 (37%), Gaps = 8/216 (3%)

Query: 79  WLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRK 138
                   L+ L +L         +N      +          I  +N       +    
Sbjct: 160 SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT 219

Query: 139 HIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISE 198
           ++++L L+ N +  I   L +   + DL L+ NQIS L A       +  L L  N+IS 
Sbjct: 220 NLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISN 277

Query: 199 IHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNL 258
           I   A      T       N           NLK L YL L+ NNI  I       L  L
Sbjct: 278 ISPLA----GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKL 331

Query: 259 KSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELI 294
           + +  + NK++ +    +   ++ L+ G+N +++L 
Sbjct: 332 QRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLT 367

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 6/242 (2%)

Query: 53  NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLE 112
           +++TTL      I  I+ +    ++  +N  +N L  +  L    + + +  N       
Sbjct: 44  DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI 103

Query: 113 LNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQ 172
                      L+    +   I   K++  L+      +TI+     +       LS+  
Sbjct: 104 TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN 163

Query: 173 ISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLK 232
                        + RL +  NK+S+I   A      +   L   NN++++I        
Sbjct: 164 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES---LIATNNQISDITPLGIL-T 219

Query: 233 KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNE 292
            L  L L+ N ++ I   T   L NL  + L+ N+++ +       +L+ L LG N ++ 
Sbjct: 220 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN 277

Query: 293 LI 294
           + 
Sbjct: 278 IS 279

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 214 LDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD 273
             L    +T+      +L ++  L      I+ I     E+L NL  I+ S N+LT I  
Sbjct: 27  TVLGKTNVTDTVSQ-TDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP 83

Query: 274 FIHNKRLSHLNLGYNF 289
             +  +L  + +  N 
Sbjct: 84  LKNLTKLVDILMNNNQ 99

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.0 bits (136), Expect = 7e-10
 Identities = 53/251 (21%), Positives = 97/251 (38%), Gaps = 16/251 (6%)

Query: 36  DNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTL-DSLP 94
           +N+I E++  ++          L   +              +  L +  N L+ L + +P
Sbjct: 40  NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP 99

Query: 95  KTMETLSVANNYLV-------NYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSN 147
           KT++ L V  N +        N L    +  L    L ++ I+       K +  + +++
Sbjct: 100 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 159

Query: 148 NLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGL 207
             I+TI   L  +  + +L L  N+I+K++A + + LN               D      
Sbjct: 160 TNITTIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 217

Query: 208 NSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTF------EHLVNLKSI 261
              L  L L NN+L  +     + K ++ +YLHNNNI  I +N F          +   +
Sbjct: 218 TPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 277

Query: 262 SLSGNKLTRIP 272
           SL  N +    
Sbjct: 278 SLFSNPVQYWE 288

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.4 bits (106), Expect = 4e-06
 Identities = 42/177 (23%), Positives = 66/177 (37%), Gaps = 7/177 (3%)

Query: 117 TSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQ 172
                + L NN I E       N K++  L L NN IS I+         ++ L LS NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 173 ISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLK 232
           + +L     + L   R++           F        +E            N  F+ +K
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 233 KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNF 289
           KL Y+ + + NI  I         +L  + L GNK+T++         +   LG +F
Sbjct: 151 KLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 3/119 (2%)

Query: 185 NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNN 243
           +   L L+ NKI+EI D  F  L   L  L L NN+++ I    F  L KL+ LYL  N 
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 244 IEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVEN 302
           ++ +     + L  L+       K+ R   F    ++  + LG N L    +E+   + 
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 9e-06
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 9/77 (11%)

Query: 209 STLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL 268
            +LE L++ NN+L  +      L++L       N++  +     E   NLK + +  N L
Sbjct: 284 PSLEELNVSNNKLIELPALPPRLERL---IASFNHLAEVP----ELPQNLKQLHVEYNPL 336

Query: 269 TRIPDFIHNKRLSHLNL 285
              PD   +  +  L +
Sbjct: 337 REFPDIPES--VEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 5e-05
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 218 NNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHN 277
           N     I         L+ L + NN +  +          L+ +  S N L  +P+   N
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPELPQN 325

Query: 278 KRLSHLNLGYNFLNEL 293
             L  L++ YN L E 
Sbjct: 326 --LKQLHVEYNPLREF 339

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 46/198 (23%), Positives = 72/198 (36%), Gaps = 6/198 (3%)

Query: 76  SILWLNMDSNLLQTL-DSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEF 132
           S L +N D   L  L   LPK    L ++ N L   +   L   T L  + L    + + 
Sbjct: 11  SHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 133 VIPNR-KHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVF-RLY 190
            +      +  LDLS+N + ++ L       +  L +S+N+++ L     R L     LY
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130

Query: 191 LKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNN 250
           LK N++  +            +     NN           L+ L  L L  N++  I   
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190

Query: 251 TFEHLVNLKSISLSGNKL 268
            F     L    L GN  
Sbjct: 191 FF-GSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 40/176 (22%), Positives = 66/176 (37%), Gaps = 5/176 (2%)

Query: 117 TSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQI 173
                + LS N +  F    +     + +L+L    ++ + ++      +  L LS+NQ+
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-LGTLDLSHNQL 89

Query: 174 SKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKK 233
             L         +  L + FN+++ +   A  GL    E     N   T          K
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 234 LKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIP-DFIHNKRLSHLNLGYN 288
           L+ L L NNN+  +       L NL ++ L  N L  IP  F  +  L    L  N
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 21/197 (10%)

Query: 49  PEIQNKLTTLFIGENHIHQI--ENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNY 106
           P++    T L + EN ++      L  +  +  LN+D                       
Sbjct: 27  PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-----------------LTK 69

Query: 107 LVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDL 166
           L     L  + +L         +                 N L S     L     +++L
Sbjct: 70  LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129

Query: 167 ILSYNQISKLNANTFRNLNVFRLYLK-FNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN 225
            L  N++  L                  N ++E+     NGL + L+ L L+ N L  I 
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN-LDTLLLQENSLYTIP 188

Query: 226 QCFRNLKKLKYLYLHNN 242
           + F     L + +LH N
Sbjct: 189 KGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 2/74 (2%)

Query: 209 STLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL 268
           ++   ++ +   LT +       K    L+L  N +      T      L  ++L   +L
Sbjct: 10  ASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 269 TRIPDFIHNKRLSH 282
           T++        L  
Sbjct: 68  TKLQVDGTLPVLGT 81

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 22/141 (15%), Positives = 47/141 (33%), Gaps = 6/141 (4%)

Query: 144 DLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFA 203
           +L    +  + L ++  Y      L    +           N+  +  + + ++      
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDP--DLVAQNIDVVLNRRSSMAATLRII 60

Query: 204 FNGLNSTLEFLDLENNRLTN---INQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKS 260
              +   L  L+L NNRL     ++   +    LK L L  N ++  +       + L+ 
Sbjct: 61  EENIPE-LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 119

Query: 261 ISLSGNKLTRIPDFIHNKRLS 281
           + L GN L+           +
Sbjct: 120 LWLDGNSLSDTFRDQSTYISA 140

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 224 INQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIP 272
            N  F        L +    I  + +   E+L  L++ S     L ++P
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP 239

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 32/183 (17%), Positives = 60/183 (32%), Gaps = 9/183 (4%)

Query: 104 NNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYY 162
              + + +  N + S+  I+ +N+ IK    I    ++ KL L+ N ++ I    N    
Sbjct: 33  KKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNL 92

Query: 163 IKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT 222
                  +  + +       +L   +     +            ++          N   
Sbjct: 93  G------WLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI 146

Query: 223 NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSH 282
                   L KL  L L +N I  I       L  L+++ LS N ++ +      K L  
Sbjct: 147 TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDV 204

Query: 283 LNL 285
           L L
Sbjct: 205 LEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 8e-04
 Identities = 27/203 (13%), Positives = 61/203 (30%), Gaps = 9/203 (4%)

Query: 65  IHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTMETLSVANNYLVNYLELNRMTSLKWI 122
           I QI + + F   +  N+    +    +     +++ +   N+ + +   +  + ++  +
Sbjct: 14  IKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKL 73

Query: 123 VLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFR 182
            L+ N +      + K +  L     L    N   + +       L    +     +   
Sbjct: 74  FLNGNKLT-----DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN 128

Query: 183 NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNN 242
            L            +            T        +   +       L KL+ LYL  N
Sbjct: 129 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN 188

Query: 243 NIEFIQNNTFEHLVNLKSISLSG 265
           +I  ++      L NL  + L  
Sbjct: 189 HISDLRA--LAGLKNLDVLELFS 209

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 3/166 (1%)

Query: 128 YIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYY-IKDLILSYNQISKLNANTFRNL-N 185
            +          +  L L    +  +   L      ++ L L  N +  L  +TFR+L N
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154

Query: 186 VFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIE 245
           +  L+L  N+IS + + AF GL+S    L  +N         FR+L +L  LYL  NN+ 
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

Query: 246 FIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKR-LSHLNLGYNFL 290
            +       L  L+ + L+ N              L       + +
Sbjct: 215 ALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEV 260

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 7e-04
 Identities = 29/191 (15%), Positives = 53/191 (27%), Gaps = 7/191 (3%)

Query: 95  KTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTIN 154
             + TLS     +     +  + +L  + L +N I      +   ++ L     L  + N
Sbjct: 41  DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI-----TDLAPLKNLTKITELELSGN 95

Query: 155 LNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFL 214
              N +       +    ++         L                         T    
Sbjct: 96  PLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQY 155

Query: 215 DLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDF 274
               N   +      NL KL  L   +N I  I       L NL  + L  N+++ +   
Sbjct: 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPL 213

Query: 275 IHNKRLSHLNL 285
            +   L  + L
Sbjct: 214 ANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 26/189 (13%), Positives = 58/189 (30%), Gaps = 3/189 (1%)

Query: 53  NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLE 112
           + +TTL      +  IE +    +++ L +  N +  L  L    +   +  +       
Sbjct: 41  DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV 100

Query: 113 LNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQ 172
                      L     +   +     +  L +    ++ I              LS   
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGN 160

Query: 173 ISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLK 232
               +       N+ +L       ++I D +       L  + L+NN+++++     N  
Sbjct: 161 AQVSDLTPLA--NLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV-SPLANTS 217

Query: 233 KLKYLYLHN 241
            L  + L N
Sbjct: 218 NLFIVTLTN 226

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 8e-04
 Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 2/112 (1%)

Query: 124 LSNNYIKEF-VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFR 182
           L++  +     +     +  LDLS+N +  +   L     ++ L  S N +  ++     
Sbjct: 5   LAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANL 64

Query: 183 NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKL 234
              +  L L  N++ +            L  L+L+ N L         L ++
Sbjct: 65  P-RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.1 bits (80), Expect = 0.003
 Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 26/112 (23%)

Query: 189 LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKL-------------- 234
           L+L    ++ +           +  LDL +NRL  +      L+ L              
Sbjct: 3   LHLAHKDLTVLCHL---EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 235 --------KYLYLHNNNIEFIQN-NTFEHLVNLKSISLSGNKLTRIPDFIHN 277
                   + L L NN ++             L  ++L GN L +       
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 111

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 225 NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT-RIPDFIHNKRLSHL 283
                  K L  L L NN I          L  L S+++S N L   IP   + +R    
Sbjct: 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296

Query: 284 NLGYN 288
               N
Sbjct: 297 AYANN 301

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 4/118 (3%)

Query: 209 STLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL 268
                LDL   ++  I      L +   +   +N I  +    F  L  LK++ ++ N++
Sbjct: 18  VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRI 75

Query: 269 TRIPDFIHN--KRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVMEDQFSMR 324
            RI + +      L+ L L  N L EL     +   + +    +  +    +  + + 
Sbjct: 76  CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	325
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.91
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.83
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.82
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.81
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.79
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.78
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.56
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.36
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.26
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.15
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.02
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.96
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.83
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.81
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.36
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.17

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=8.6e-26  Score=198.82  Aligned_cols=259  Identities=25%  Similarity=0.362  Sum_probs=167.8

Q ss_pred             cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEEe
Q psy11652         25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSV  102 (325)
Q Consensus        25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l  102 (325)
                      ++.+|++|+++++.|++++.  + ..+ ++|++|++++|.+++++.++++++|++|++++|.+..+..+  +++|+.|++
T Consensus        42 ~l~~l~~L~l~~~~I~~l~g--l-~~L-~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~  117 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSIDG--V-EYL-NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTL  117 (384)
T ss_dssp             HHTTCCEEECCSSCCCCCTT--G-GGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             HhCCCCEEECCCCCCCCccc--c-ccC-CCCCEEeCcCCcCCCCccccCCcccccccccccccccccccccccccccccc
Confidence            56688888888888888753  4 445 88888999888888888788888888888888888777555  788888888


Q ss_pred             ecCcccchh-----------------------------------------------------------------hhccCC
Q psy11652        103 ANNYLVNYL-----------------------------------------------------------------ELNRMT  117 (325)
Q Consensus       103 ~~~~l~~~~-----------------------------------------------------------------~~~~~~  117 (325)
                      .++.+....                                                                 ....++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  197 (384)
T d2omza2         118 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT  197 (384)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence            776554331                                                                 233344


Q ss_pred             CCCEEEccCCcceeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCC
Q psy11652        118 SLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKI  196 (325)
Q Consensus       118 ~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l  196 (325)
                      +++.++++++.++.++ ....++|++|++++|.++.++ .+..+++|+.+++.+|.++.+++ +...++|+.++++++.+
T Consensus       198 ~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l  275 (384)
T d2omza2         198 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQI  275 (384)
T ss_dssp             TCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC
T ss_pred             ccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc-ccccccCCEeeccCccc
Confidence            5555555555555443 334455666666665555542 34555566666666665554443 33335666666666655


Q ss_pred             cccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCCCCC
Q psy11652        197 SEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIH  276 (325)
Q Consensus       197 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~  276 (325)
                      .+..  .+..++ .++.+.+..+.+..++ .+..+++++.|++++|+++++.+  +..+++|+.|++++|+++.++.+..
T Consensus       276 ~~~~--~~~~~~-~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l~~l~~  349 (384)
T d2omza2         276 SNIS--PLAGLT-ALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSSLAN  349 (384)
T ss_dssp             CCCG--GGTTCT-TCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGGGGG
T ss_pred             CCCC--cccccc-cccccccccccccccc-ccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCChhHcC
Confidence            5443  244554 5666666666555443 25566677777777777766543  5667777777777777776665666


Q ss_pred             CCCCCEEECCCCcCccccc
Q psy11652        277 NKRLSHLNLGYNFLNELIL  295 (325)
Q Consensus       277 ~~~L~~L~l~~n~i~~~~~  295 (325)
                      +++|++|++++|+++++++
T Consensus       350 l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         350 LTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             CTTCCEEECCSSCCCBCGG
T ss_pred             CCCCCEEECCCCcCCCChh
Confidence            7777777777777777665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=3.6e-25  Score=188.99  Aligned_cols=257  Identities=17%  Similarity=0.221  Sum_probs=216.6

Q ss_pred             ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCccEEE
Q psy11652         28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLS  101 (325)
Q Consensus        28 ~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~  101 (325)
                      ..+.+++++.+++++|. .+    ++.+++|+|++|.++.++  +|.++++|++|++++|.+..+  ..|  ++.|++|+
T Consensus        11 ~~~~~~C~~~~L~~lP~-~l----~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPK-DL----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY   85 (305)
T ss_dssp             ETTEEECTTSCCCSCCC-SC----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEecCCCCCccCC-CC----CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEec
Confidence            67889999999999998 55    478999999999999998  799999999999999999888  456  89999999


Q ss_pred             eecCcccchhhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc---hhhccCCCCccEEEccCCcCcc
Q psy11652        102 VANNYLVNYLELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI---NLNLNNTYYIKDLILSYNQISK  175 (325)
Q Consensus       102 l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~l~~  175 (325)
                      +++|.+..+.. ...+.++.|.+..+.+..++   +.....+..+....+.....   ...+..+++|+.+.+.+|.+..
T Consensus        86 l~~n~l~~l~~-~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~  164 (305)
T d1xkua_          86 LSKNQLKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  164 (305)
T ss_dssp             CCSSCCSBCCS-SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             ccCCccCcCcc-chhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc
Confidence            99998887732 23468899999999888766   55677778888877765433   5678888999999999998887


Q ss_pred             cccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhcc
Q psy11652        176 LNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEH  254 (325)
Q Consensus       176 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~  254 (325)
                      ++...  .++++.|++++|......+..+..++ .++.|++++|.+..++. .+..+++|++|++++|.++.++. .+..
T Consensus       165 l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~-~l~~  240 (305)
T d1xkua_         165 IPQGL--PPSLTELHLDGNKITKVDAASLKGLN-NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLAD  240 (305)
T ss_dssp             CCSSC--CTTCSEEECTTSCCCEECTGGGTTCT-TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-TTTT
T ss_pred             cCccc--CCccCEEECCCCcCCCCChhHhhccc-cccccccccccccccccccccccccceeeeccccccccccc-cccc
Confidence            76543  47999999999999888888898998 99999999999987654 78889999999999999998865 6888


Q ss_pred             CccCCEEEccCCCCcccCC--------CCCCCCCCEEECCCCcCcccc
Q psy11652        255 LVNLKSISLSGNKLTRIPD--------FIHNKRLSHLNLGYNFLNELI  294 (325)
Q Consensus       255 ~~~L~~L~l~~n~l~~l~~--------~~~~~~L~~L~l~~n~i~~~~  294 (325)
                      +++|+.|++++|+|+.++.        ....++|+.+++++|+++..+
T Consensus       241 l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~  288 (305)
T d1xkua_         241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE  288 (305)
T ss_dssp             CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred             ccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCc
Confidence            9999999999999998764        245578999999999987543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=6e-25  Score=193.36  Aligned_cols=253  Identities=23%  Similarity=0.366  Sum_probs=218.7

Q ss_pred             hcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCccc-------------
Q psy11652         24 ISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTL-------------   90 (325)
Q Consensus        24 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------------   90 (325)
                      ..+++|++|++++|.|++++.  + ..+ ++|++|++++|.+..++.+.++++|+.++++++.+.+.             
T Consensus        63 ~~L~nL~~L~Ls~N~l~~l~~--l-~~L-~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~  138 (384)
T d2omza2          63 EYLNNLTQINFSNNQLTDITP--L-KNL-TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE  138 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--G-TTC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             ccCCCCCEEeCcCCcCCCCcc--c-cCC-ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            378999999999999999985  5 666 99999999999999888899999999999987655432             


Q ss_pred             ----------------------------------------------------ccc--cCCccEEEeecCcccchhhhccC
Q psy11652         91 ----------------------------------------------------DSL--PKTMETLSVANNYLVNYLELNRM  116 (325)
Q Consensus        91 ----------------------------------------------------~~l--~~~L~~L~l~~~~l~~~~~~~~~  116 (325)
                                                                          ..+  +++++.++++++.+..+......
T Consensus       139 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~  218 (384)
T d2omza2         139 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL  218 (384)
T ss_dssp             EEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGC
T ss_pred             cccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCccccc
Confidence                                                                011  46788888888888877667888


Q ss_pred             CCCCEEEccCCcceeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCC
Q psy11652        117 TSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNK  195 (325)
Q Consensus       117 ~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~  195 (325)
                      ++|+.|++++|.++.++ ...+++|+.+++++|.++.++ .++.+++|+.++++++.+..+++ +.....++.+.+..+.
T Consensus       219 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~l~~l~~~~n~  296 (384)
T d2omza2         219 TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQ  296 (384)
T ss_dssp             TTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC
T ss_pred             CCCCEEECCCCCCCCcchhhcccccchhccccCccCCCC-cccccccCCEeeccCcccCCCCc-cccccccccccccccc
Confidence            99999999999999888 778899999999999998874 37889999999999999887664 4456889999999999


Q ss_pred             CcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCCCC
Q psy11652        196 ISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFI  275 (325)
Q Consensus       196 l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~  275 (325)
                      +++..  .+..++ +++.+++++|.+..++. +..+++|++|++++|.++.++  .++++++|+.|++++|++++++++.
T Consensus       297 l~~~~--~~~~~~-~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~l~--~l~~l~~L~~L~l~~N~l~~l~~l~  370 (384)
T d2omza2         297 LEDIS--PISNLK-NLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTPLA  370 (384)
T ss_dssp             CSCCG--GGGGCT-TCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCBCGGGT
T ss_pred             ccccc--ccchhc-ccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCCCh--hHcCCCCCCEEECCCCcCCCChhhc
Confidence            88754  467777 99999999999998864 788999999999999998865  4788999999999999999988889


Q ss_pred             CCCCCCEEECCCC
Q psy11652        276 HNKRLSHLNLGYN  288 (325)
Q Consensus       276 ~~~~L~~L~l~~n  288 (325)
                      ++++|+.|++++|
T Consensus       371 ~l~~L~~L~L~~N  383 (384)
T d2omza2         371 NLTRITQLGLNDQ  383 (384)
T ss_dssp             TCTTCSEEECCCE
T ss_pred             cCCCCCEeeCCCC
Confidence            9999999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.5e-24  Score=185.18  Aligned_cols=249  Identities=25%  Similarity=0.364  Sum_probs=208.6

Q ss_pred             cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc-ccccCCccEEEee
Q psy11652         27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL-DSLPKTMETLSVA  103 (325)
Q Consensus        27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~-~~l~~~L~~L~l~  103 (325)
                      +++++|++++|.|+.++...| ..+ ++|++|++++|.+..++  .|.++++|++|++++|++..+ ..+.+.+..|.+.
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f-~~l-~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~  108 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDF-KNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH  108 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTT-TTC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECC
T ss_pred             CCCCEEECcCCcCCCcChhHh-hcc-ccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhcc
Confidence            479999999999999998778 777 89999999999999886  799999999999999999888 4458899999999


Q ss_pred             cCcccch--hhhccCCCCCEEEccCCcceeec-----CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCccc
Q psy11652        104 NNYLVNY--LELNRMTSLKWIVLSNNYIKEFV-----IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKL  176 (325)
Q Consensus       104 ~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  176 (325)
                      +|.+..+  ..+.....+..+....+......     +..+++|+.+++++|.+..++..+  +++|+.|++.+|.....
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~~~  186 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKV  186 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEE
T ss_pred             ccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCccc--CCccCEEECCCCcCCCC
Confidence            9988877  56777888888988877554221     456789999999999988875433  67899999999988766


Q ss_pred             ccCccCC-ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchh---
Q psy11652        177 NANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTF---  252 (325)
Q Consensus       177 ~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l---  252 (325)
                      ....+.. +.++.|++++|.+++.++..+.+++ +|++|++++|+++.+|..+..+++|++|++++|+++.++...|   
T Consensus       187 ~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~-~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~  265 (305)
T d1xkua_         187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP  265 (305)
T ss_dssp             CTGGGTTCTTCCEEECCSSCCCEECTTTGGGST-TCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred             ChhHhhccccccccccccccccccccccccccc-cceeeecccccccccccccccccCCCEEECCCCccCccChhhccCc
Confidence            5544444 8999999999999999888999998 9999999999999999899999999999999999998765444   


Q ss_pred             ---ccCccCCEEEccCCCCc--ccCC--CCCCCCC
Q psy11652        253 ---EHLVNLKSISLSGNKLT--RIPD--FIHNKRL  280 (325)
Q Consensus       253 ---~~~~~L~~L~l~~n~l~--~l~~--~~~~~~L  280 (325)
                         ...++|+.|++++|.+.  .+++  |..+...
T Consensus       266 ~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~  300 (305)
T d1xkua_         266 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR  300 (305)
T ss_dssp             SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred             chhcccCCCCEEECCCCcCccCcCCHhHhcccccC
Confidence               34578999999999987  4544  4443333

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.91  E-value=8.2e-24  Score=181.16  Aligned_cols=252  Identities=19%  Similarity=0.185  Sum_probs=144.6

Q ss_pred             ccccc--ccccc-hhhhhccc------ccceEEcCCCcee---eecCCCcCcccccCccEEECCC-Cccc-ccc-cccCC
Q psy11652         10 VSGIQ--YGPCS-ENVQISCI------LLMSAENEDNQIA---ELETANWSPEIQNKLTTLFIGE-NHIH-QIE-NLNGF   74 (325)
Q Consensus        10 ~~~~~--~~~~~-~~~~~~~~------~L~~L~l~~~~i~---~~~~~~~~~~~~~~L~~L~l~~-~~~~-~~~-~~~~~   74 (325)
                      +..|.  .++|. .|.++.|.      ++++|+++++.++   .+|. .+ +++ ++|++|+|++ |.+. .+| .+.++
T Consensus        24 l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~-~l-~~L-~~L~~L~Ls~~N~l~g~iP~~i~~L  100 (313)
T d1ogqa_          24 LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-SL-ANL-PYLNFLYIGGINNLVGPIPPAIAKL  100 (313)
T ss_dssp             GTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG-GG-GGC-TTCSEEEEEEETTEESCCCGGGGGC
T ss_pred             CCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCCh-HH-hcC-ccccccccccccccccccccccccc
Confidence            44453  34553 48888886      3777888877666   4555 56 666 7788888875 4555 566 67777


Q ss_pred             CCccEEEccCCCCccc--ccc--cCCccEEEeecCcccch--hhhccCCCCCEEEccCCcce-eec--CCCCCCc-cEEE
Q psy11652         75 RSILWLNMDSNLLQTL--DSL--PKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIK-EFV--IPNRKHI-EKLD  144 (325)
Q Consensus        75 ~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~-~~~--~~~~~~L-~~L~  144 (325)
                      ++|++|++++|.+...  ..+  ...|+.+++++|.+...  ..+.+++.++.+++++|.+. .+|  ...+.++ +.++
T Consensus       101 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~  180 (313)
T d1ogqa_         101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT  180 (313)
T ss_dssp             TTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred             cccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccc
Confidence            7777777777776655  223  66666666666655444  45666666666666666554 333  2233332 4445


Q ss_pred             ccCCccccc-hhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcC
Q psy11652        145 LSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN  223 (325)
Q Consensus       145 l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~  223 (325)
                      +++|.++.. +..+..+                        ....+++..+......+..+..++ +++.+++.++.+..
T Consensus       181 ~~~n~l~~~~~~~~~~l------------------------~~~~l~l~~~~~~~~~~~~~~~~~-~l~~l~~~~~~l~~  235 (313)
T d1ogqa_         181 ISRNRLTGKIPPTFANL------------------------NLAFVDLSRNMLEGDASVLFGSDK-NTQKIHLAKNSLAF  235 (313)
T ss_dssp             CCSSEEEEECCGGGGGC------------------------CCSEEECCSSEEEECCGGGCCTTS-CCSEEECCSSEECC
T ss_pred             ccccccccccccccccc------------------------cccccccccccccccccccccccc-cccccccccccccc
Confidence            555544443 3333332                        333444444444444444444444 56666666555554


Q ss_pred             chHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCc-ccCCCCCCCCCCEEECCCCc
Q psy11652        224 INQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT-RIPDFIHNKRLSHLNLGYNF  289 (325)
Q Consensus       224 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~l~~~~~~~~L~~L~l~~n~  289 (325)
                      .+..+..+++++.|++++|++++..|..++.+++|++|++++|+++ .+|.+..+++|+.+++.+|+
T Consensus       236 ~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             cccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCc
Confidence            4444555566666666666666444445566666666666666665 45555555666666666665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.90  E-value=8e-24  Score=181.25  Aligned_cols=216  Identities=19%  Similarity=0.241  Sum_probs=158.4

Q ss_pred             cCCccEEEeec-Ccccc-h-hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEE
Q psy11652         94 PKTMETLSVAN-NYLVN-Y-LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDL  166 (325)
Q Consensus        94 ~~~L~~L~l~~-~~l~~-~-~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L  166 (325)
                      +++|++|++++ |.+++ + ..+.++++|++|++++|.+..++   +..+.+|++++++.|.+... |..+.+++.++.+
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l  154 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccccee
Confidence            44555555543 34432 2 45666666777777766666444   44566777777777776655 7778888889999


Q ss_pred             EccCCcCc-ccccCccCCcc-ccEEEcccCCCcccChhhhhCccccCCEEEccCCCCc-CchHhhhCCCCCCEEeCCCCc
Q psy11652        167 ILSYNQIS-KLNANTFRNLN-VFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNN  243 (325)
Q Consensus       167 ~l~~~~l~-~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~  243 (325)
                      ++.+|.+. .++..+..... ++.+++++|.+++..+..+..+  ....+++..+... .+|..+..+++++.+++.++.
T Consensus       155 ~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l--~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~  232 (313)
T d1ogqa_         155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC--CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccc
Confidence            99888876 45666666644 4788999999888777777665  4557888887665 667788889999999999999


Q ss_pred             ccccccchhccCccCCEEEccCCCCc-ccCC-CCCCCCCCEEECCCCcCcccccccccchhhhccccccccc
Q psy11652        244 IEFIQNNTFEHLVNLKSISLSGNKLT-RIPD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNS  313 (325)
Q Consensus       244 l~~~~~~~l~~~~~L~~L~l~~n~l~-~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~  313 (325)
                      +.+.++ .++.+++|+.|++++|+++ .+|. +..+++|+.|++++|++++..|+. .....+..+++..|+
T Consensus       233 l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~-~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         233 LAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             ECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             cccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc-ccCCCCCHHHhCCCc
Confidence            987655 5778899999999999999 7888 999999999999999999543432 222344456666775

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2e-23  Score=176.30  Aligned_cols=210  Identities=20%  Similarity=0.323  Sum_probs=158.7

Q ss_pred             ceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCccEEEee
Q psy11652         30 MSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLSVA  103 (325)
Q Consensus        30 ~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l~  103 (325)
                      ..+++++.+++.+|. .+    ++.+++|+|++|.++.+|  +|.++++|++|+++++.+..+  ..+  ...+..+...
T Consensus        14 ~~v~c~~~~L~~iP~-~i----p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~   88 (284)
T d1ozna_          14 VTTSCPQQGLQAVPV-GI----PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS   88 (284)
T ss_dssp             CEEECCSSCCSSCCT-TC----CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCCCCCCccCC-CC----CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccc
Confidence            456888888999988 44    468999999999999998  799999999999999998887  333  6777777765


Q ss_pred             c-Ccccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCccc
Q psy11652        104 N-NYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKL  176 (325)
Q Consensus       104 ~-~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~  176 (325)
                      . +.+..+  ..+.++++|++|+++.|.+..++   +....+|+.+++++|.++.+ +..|+.+++|+.|++.+|.+..+
T Consensus        89 ~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l  168 (284)
T d1ozna_          89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (284)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             cccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccccc
Confidence            3 445554  56777888888888888777555   44567778888888887777 56677777778888877777776


Q ss_pred             ccCccCC-ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCccc
Q psy11652        177 NANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIE  245 (325)
Q Consensus       177 ~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~  245 (325)
                      ++..+.. ++|+.+++++|.++++.+..|..++ ++++|++++|.+..++. .++.+++|++|++++|.+.
T Consensus       169 ~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~-~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG-RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             chhhhccccccchhhhhhccccccChhHhhhhh-hcccccccccccccccccccccccccCEEEecCCCCC
Confidence            6655554 7777777777777777777777776 77777777777775543 6667777777777777665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1e-22  Score=171.77  Aligned_cols=212  Identities=23%  Similarity=0.342  Sum_probs=160.6

Q ss_pred             EEccCCCCccc-ccccCCccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEcc-CCcccc
Q psy11652         80 LNMDSNLLQTL-DSLPKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLS-NNLIST  152 (325)
Q Consensus        80 L~l~~~~~~~~-~~l~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~-~~~~~~  152 (325)
                      ++.+++.++.+ ..+++.+++|++++|.++.+  ..+.++++|++|+++++.+..++   ......+..+... .+.++.
T Consensus        16 v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~   95 (284)
T d1ozna_          16 TSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS   95 (284)
T ss_dssp             EECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC
T ss_pred             EEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccccc
Confidence            34444445544 33466667777777776666  45777777888888777777666   4456677776653 455666


Q ss_pred             c-hhhccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhh
Q psy11652        153 I-NLNLNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFR  229 (325)
Q Consensus       153 ~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~  229 (325)
                      + +..|+++++|+.|++.+|.+..+....+.. .+|+.+++++|.++.+++..|...+ +++.|++++|.+..++. .+.
T Consensus        96 l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~-~L~~L~l~~N~l~~l~~~~f~  174 (284)
T d1ozna_          96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-NLTHLFLHGNRISSVPERAFR  174 (284)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCEECTTTTT
T ss_pred             ccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcccc-chhhcccccCcccccchhhhc
Confidence            6 677888888888888888877666655555 7888888888888888777888887 88888888888886654 677


Q ss_pred             CCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcc
Q psy11652        230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNE  292 (325)
Q Consensus       230 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~  292 (325)
                      ++++|+++.+.+|.++++.+..|.++++|+.|++++|++..+++  +..+++|+.|++++|++..
T Consensus       175 ~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            88888889988888888877788888888999999998887776  7888889999999888874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.2e-22  Score=165.31  Aligned_cols=195  Identities=26%  Similarity=0.283  Sum_probs=106.3

Q ss_pred             CCCCccEEEccCCCCccc-ccccCCccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCC
Q psy11652         73 GFRSILWLNMDSNLLQTL-DSLPKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNN  148 (325)
Q Consensus        73 ~~~~L~~L~l~~~~~~~~-~~l~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~  148 (325)
                      +...+.+++.++++++.+ +.++++++.|++++|.+..+  ..+.++++|++|++++|.++.++ ...+++|++|++++|
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN   87 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSS
T ss_pred             ccCCCeEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccccccccccccccccc
Confidence            344455566666666666 44566677777777766665  45666777777777777766666 445666666666666


Q ss_pred             ccccchhhccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHh
Q psy11652        149 LISTINLNLNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQC  227 (325)
Q Consensus       149 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  227 (325)
                      .++..+..+.++++|+.|++.++.+..++...+.. .+++.|++++|.++.+++..+                       
T Consensus        88 ~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~-----------------------  144 (266)
T d1p9ag_          88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL-----------------------  144 (266)
T ss_dssp             CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTT-----------------------
T ss_pred             cccccccccccccccccccccccccceeeccccccccccccccccccccceeccccc-----------------------
Confidence            65555444555555555555555544443333322 344444444444433333333                       


Q ss_pred             hhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC-CCCCCCCCEEECCCCcCc
Q psy11652        228 FRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLN  291 (325)
Q Consensus       228 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~  291 (325)
                       ..+++++.+++++|+++.+++..+..+++|+.|++++|+++.+|+ +..+++|+.|++++|++.
T Consensus       145 -~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         145 -TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             -TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             -cccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence             334444445555554444444444555555555555555555554 444555555555555543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.4e-21  Score=163.21  Aligned_cols=199  Identities=22%  Similarity=0.194  Sum_probs=169.5

Q ss_pred             ccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCccCCccccEEEcc
Q psy11652        114 NRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLK  192 (325)
Q Consensus       114 ~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~  192 (325)
                      .+...+.+++.+++.++.+|..-.+++++|++++|.++.+ +..|.++++|+.|++.+|.++.++.. ...++|+.|+++
T Consensus         7 ~~~~~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~-~~l~~L~~L~Ls   85 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS   85 (266)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred             cccCCCeEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccc-cccccccccccc
Confidence            3456677788899999999844457899999999999998 67899999999999999999987653 456999999999


Q ss_pred             cCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCccc
Q psy11652        193 FNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRI  271 (325)
Q Consensus       193 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l  271 (325)
                      +|.++..+ ..+..++ +|+.++++++.+..++. .+..+.++..|.+++|.+..+++..+..++.++.+++++|+++.+
T Consensus        86 ~N~l~~~~-~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          86 HNQLQSLP-LLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             SSCCSSCC-CCTTTCT-TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             cccccccc-ccccccc-ccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence            99998764 3677888 99999999998886654 677889999999999999999988888999999999999999988


Q ss_pred             CC--CCCCCCCCEEECCCCcCcccccccccchhhhccccccccccee
Q psy11652        272 PD--FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAV  316 (325)
Q Consensus       272 ~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (325)
                      +.  +..+++|++|++++|.|+.+|.... ....+..+++..|...+
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~-~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCBCC
T ss_pred             CccccccccccceeecccCCCcccChhHC-CCCCCCEEEecCCCCCC
Confidence            86  8899999999999999999987654 34556678888887754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.83  E-value=5.7e-19  Score=152.70  Aligned_cols=99  Identities=28%  Similarity=0.319  Sum_probs=85.6

Q ss_pred             cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccccCCccEEEeecCc
Q psy11652         27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNY  106 (325)
Q Consensus        27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~L~~L~l~~~~  106 (325)
                      .++++||+++++++.+|.  +    +++|++|++++|.++.+|..  ..+|+.|++++|.+..++.+++.|++|++++|.
T Consensus        38 ~~l~~LdLs~~~L~~lp~--~----~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~  109 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE--L----PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQ  109 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS--C----CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSC
T ss_pred             cCCCEEEeCCCCCCCCCC--C----CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhhhccccccccccccc
Confidence            579999999999999986  2    37999999999999998832  458999999999998887778899999999999


Q ss_pred             ccchhhhccCCCCCEEEccCCcceeec
Q psy11652        107 LVNYLELNRMTSLKWIVLSNNYIKEFV  133 (325)
Q Consensus       107 l~~~~~~~~~~~L~~L~l~~~~~~~~~  133 (325)
                      +..++.+..+++|+.|+++++.+...+
T Consensus       110 l~~lp~~~~l~~L~~L~l~~~~~~~~~  136 (353)
T d1jl5a_         110 LEKLPELQNSSFLKIIDVDNNSLKKLP  136 (353)
T ss_dssp             CSSCCCCTTCTTCCEEECCSSCCSCCC
T ss_pred             cccccchhhhccceeeccccccccccc
Confidence            988866788999999999988776444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=1.1e-19  Score=147.97  Aligned_cols=206  Identities=20%  Similarity=0.299  Sum_probs=122.8

Q ss_pred             cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEEe
Q psy11652         25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSV  102 (325)
Q Consensus        25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l  102 (325)
                      .+.++..++++.+.+++...  + ..+ .+|+.|++.+|.+++++.+..+++|++|++++|.+..+..+  +++++.+++
T Consensus        17 ~l~~~~~~~l~~~~~~d~~~--~-~~l-~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~   92 (227)
T d1h6ua2          17 ALANAIKIAAGKSNVTDTVT--Q-ADL-DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELEL   92 (227)
T ss_dssp             HHHHHHHHHTTCSSTTSEEC--H-HHH-HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEEC
T ss_pred             HHHHHHHHHhCCCCcCCcCC--H-HHc-CCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccccccccccccccc
Confidence            34444556666666665443  2 334 77888888888877777777788888888888777766445  677777777


Q ss_pred             ecCcccchhhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCcc
Q psy11652        103 ANNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTF  181 (325)
Q Consensus       103 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  181 (325)
                      ++|.++.+..+.++++|+.+.++++....++ ....+.+..+.++++.+.... .+.++++|+.|++.+|.+....    
T Consensus        93 ~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~----  167 (227)
T d1h6ua2          93 SGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLT----  167 (227)
T ss_dssp             CSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCCG----
T ss_pred             ccccccccccccccccccccccccccccccchhccccchhhhhchhhhhchhh-hhccccccccccccccccccch----
Confidence            7776666666667777777777666655444 445555555555555544331 2344455555555555443322    


Q ss_pred             CCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEE
Q psy11652        182 RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSI  261 (325)
Q Consensus       182 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L  261 (325)
                                           .+..++ +|++|++++|.++.++. +..+++|++|++++|+++++++  ++++++|+.|
T Consensus       168 ---------------------~l~~l~-~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L  222 (227)
T d1h6ua2         168 ---------------------PLANLS-KLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIV  222 (227)
T ss_dssp             ---------------------GGTTCT-TCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEE
T ss_pred             ---------------------hhcccc-cceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCcc--cccCCCCCEE
Confidence                                 234444 55555555555555443 4555556666666665555443  4555566666


Q ss_pred             Ecc
Q psy11652        262 SLS  264 (325)
Q Consensus       262 ~l~  264 (325)
                      +++
T Consensus       223 ~ls  225 (227)
T d1h6ua2         223 TLT  225 (227)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=1.3e-19  Score=147.48  Aligned_cols=185  Identities=25%  Similarity=0.373  Sum_probs=137.7

Q ss_pred             cCCccEEEeecCcccchhhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCc
Q psy11652         94 PKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQ  172 (325)
Q Consensus        94 ~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  172 (325)
                      +.+|+.|++.+|.++.+..+.++++|++|++++|.++.++ +..+++++++++++|.++.++ .+.++++|+.+.+.++.
T Consensus        40 l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~~  118 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQ  118 (227)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSC
T ss_pred             cCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccccccccccccccccccccccccc-ccccccccccccccccc
Confidence            5556666666665555555666666666666666666554 556667777777776666553 36677778888887776


Q ss_pred             CcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchh
Q psy11652        173 ISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTF  252 (325)
Q Consensus       173 l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l  252 (325)
                      ...+.. ....+.+..+.++++.+....  .+..++ +++.+++++|.+...+. ++.+++|+.|++++|+++++++  +
T Consensus       119 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~--~~~~~~-~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~l~~--l  191 (227)
T d1h6ua2         119 ITDVTP-LAGLSNLQVLYLDLNQITNIS--PLAGLT-NLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP--L  191 (227)
T ss_dssp             CCCCGG-GTTCTTCCEEECCSSCCCCCG--GGGGCT-TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--G
T ss_pred             ccccch-hccccchhhhhchhhhhchhh--hhcccc-ccccccccccccccchh-hcccccceecccCCCccCCChh--h
Confidence            554433 233477778888887776543  356777 99999999998876654 7889999999999999988754  7


Q ss_pred             ccCccCCEEEccCCCCcccCCCCCCCCCCEEECC
Q psy11652        253 EHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLG  286 (325)
Q Consensus       253 ~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~  286 (325)
                      +++++|++|++++|++++++++.++++|+.|+++
T Consensus       192 ~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         192 ASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             GGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEE
T ss_pred             cCCCCCCEEECcCCcCCCCcccccCCCCCEEEee
Confidence            8899999999999999999889999999999986

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.8e-19  Score=146.05  Aligned_cols=196  Identities=16%  Similarity=0.234  Sum_probs=136.9

Q ss_pred             hcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc---ccc--cCC
Q psy11652         24 ISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL---DSL--PKT   96 (325)
Q Consensus        24 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~---~~l--~~~   96 (325)
                      ++|.. +.+++++..++++|. .+    +.++++|++++|.++.+|  +|.++++|++|++++|.+...   ..|  ++.
T Consensus         6 C~C~~-~~i~c~~~~l~~iP~-~l----~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~   79 (242)
T d1xwdc1           6 CHCSN-RVFLCQESKVTEIPS-DL----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK   79 (242)
T ss_dssp             EEECS-SEEEEESCSCSSCCS-CS----CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTT
T ss_pred             CCCcC-CEEEEeCCCCCCcCC-CC----CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccc
Confidence            45543 788999999999998 44    368999999999999988  789999999999999987664   445  788


Q ss_pred             ccEEEeec-Ccccch--hhhccCCCCCEEEccCCcceeec-CCC---CCCccEEEccCCccccc-hhhccCCC-CccEEE
Q psy11652         97 METLSVAN-NYLVNY--LELNRMTSLKWIVLSNNYIKEFV-IPN---RKHIEKLDLSNNLISTI-NLNLNNTY-YIKDLI  167 (325)
Q Consensus        97 L~~L~l~~-~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~-~~~---~~~L~~L~l~~~~~~~~-~~~~~~~~-~L~~L~  167 (325)
                      ++++.+.. +.+...  ..+.++++|+++++.++.+...+ ...   +..+..+...++.+..+ +..|.+++ .++.++
T Consensus        80 l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~  159 (242)
T d1xwdc1          80 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW  159 (242)
T ss_dssp             CCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred             cccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeee
Confidence            89988765 455554  66788899999999998887655 333   33444444455566665 44555543 566777


Q ss_pred             ccCCcCcccccCccCCccccEEE-cccCCCcccChhhhhCccccCCEEEccCCCCcCchH
Q psy11652        168 LSYNQISKLNANTFRNLNVFRLY-LKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ  226 (325)
Q Consensus       168 l~~~~l~~~~~~~~~~~~L~~L~-l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  226 (325)
                      +.+|.++.++...+...++..+. +.+|.++.+++..|.+++ +|+.|++++|+++.+|.
T Consensus       160 l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~-~L~~L~Ls~N~l~~l~~  218 (242)
T d1xwdc1         160 LNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGAS-GPVILDISRTRIHSLPS  218 (242)
T ss_dssp             CCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSC-CCSEEECTTSCCCCCCS
T ss_pred             cccccccccccccccchhhhccccccccccccccHHHhcCCC-CCCEEECCCCcCCccCH
Confidence            77777776666666555555443 455566666555566665 66666666666655543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.3e-18  Score=142.79  Aligned_cols=216  Identities=20%  Similarity=0.204  Sum_probs=151.2

Q ss_pred             cEEEccCCCCccc-ccccCCccEEEeecCcccch--hhhccCCCCCEEEccCCccee-ec---CCCCCCccEEEccC-Cc
Q psy11652         78 LWLNMDSNLLQTL-DSLPKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKE-FV---IPNRKHIEKLDLSN-NL  149 (325)
Q Consensus        78 ~~L~l~~~~~~~~-~~l~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~-~~---~~~~~~L~~L~l~~-~~  149 (325)
                      +.++.++..++.+ ..++++++.|++++|.+..+  ..|.++++|++|++++|.+.. ++   +..+.+++++.+.. +.
T Consensus        11 ~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~   90 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN   90 (242)
T ss_dssp             SEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTT
T ss_pred             CEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccc
Confidence            5667777667666 55567788888888887777  467888888888888887653 33   34677888887653 55


Q ss_pred             cccc-hhhccCCCCccEEEccCCcCcccccCcc--CCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH
Q psy11652        150 ISTI-NLNLNNTYYIKDLILSYNQISKLNANTF--RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ  226 (325)
Q Consensus       150 ~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  226 (325)
                      +... +..|.++++|+.+++.++.+...+....  ....+..+...++.+..+....|.+++..++.+++.+|.++.++.
T Consensus        91 l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~  170 (242)
T d1xwdc1          91 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN  170 (242)
T ss_dssp             CCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT
T ss_pred             ccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccc
Confidence            6665 6778888999999998888776554222  125555566666677777777777766578888888888887766


Q ss_pred             hhhCCCCCCEE-eCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCccccc
Q psy11652        227 CFRNLKKLKYL-YLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELIL  295 (325)
Q Consensus       227 ~~~~~~~L~~L-~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~  295 (325)
                      ......++..+ .+.+|.++.++...|.++++|+.|++++|+++.+|.  +.++++|+.+++  +.++.+|+
T Consensus       171 ~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~--~~l~~lp~  240 (242)
T d1xwdc1         171 CAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT  240 (242)
T ss_dssp             TTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE--ESSSCSCC
T ss_pred             ccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC--CCCCcCCC
Confidence            44455665555 456777888877778888888888888888888876  565555555443  34555553

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=2.1e-18  Score=137.26  Aligned_cols=143  Identities=22%  Similarity=0.328  Sum_probs=71.5

Q ss_pred             ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEEeecC
Q psy11652         28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSVANN  105 (325)
Q Consensus        28 ~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l~~~  105 (325)
                      +.....++.+.+++...  . ..+ +++++|+++++.+.+++.++.+++|++|++++|.+.++..+  +++|+.|++++|
T Consensus        19 ~~i~~~l~~~~~~~~~~--~-~~l-~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          19 EKMKTVLGKTNVTDTVS--Q-TDL-DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN   94 (199)
T ss_dssp             HHHHHHTTCSSTTSEEC--H-HHH-TTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred             HHHHHHhCCCCCCCccC--H-HHh-cCCCEEECCCCCCCCccccccCCCcCcCccccccccCcccccCCccccccccccc
Confidence            33344455555554333  1 223 56666666666666555555566666666666655555334  455555555555


Q ss_pred             cccchhhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcc
Q psy11652        106 YLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISK  175 (325)
Q Consensus       106 ~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  175 (325)
                      .+..+..+.+++.|+.|+++++....++ ...+++|+.|++++|.+..++ .+..+++++.|++.+|.++.
T Consensus        95 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~  164 (199)
T d2omxa2          95 QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTD  164 (199)
T ss_dssp             CCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCC
T ss_pred             ccccccccccccccccccccccccccccccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccC
Confidence            5444444555555555555555444333 334444444444444443332 23444444444444444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=3.4e-18  Score=136.01  Aligned_cols=158  Identities=22%  Similarity=0.350  Sum_probs=68.2

Q ss_pred             CCCCEEEccCCcceeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCC
Q psy11652        117 TSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNK  195 (325)
Q Consensus       117 ~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~  195 (325)
                      +++++|+++++.++.++ ...+++|++|++++|.++.++. ++++++|+.|++.+|.+..++. +...+.|+.|+++++.
T Consensus        40 ~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~~~~  117 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ  117 (199)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECCSSC
T ss_pred             cCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc-ccCCcccccccccccccccccc-cccccccccccccccc
Confidence            33444444444433333 2333444444444444433321 3444444444444444333332 2222444444444444


Q ss_pred             CcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCCCC
Q psy11652        196 ISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFI  275 (325)
Q Consensus       196 l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~  275 (325)
                      .....  .+..++ +|+.+++++|.+..++ .+..+++++.|++.+|.++.+++  ++++++|+.|++++|++++++.++
T Consensus       118 ~~~~~--~~~~l~-~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~i~~i~~l~  191 (199)
T d2omxa2         118 ITDID--PLKNLT-NLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLA  191 (199)
T ss_dssp             CCCCG--GGTTCT-TCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGG
T ss_pred             ccccc--ccchhh-hhHHhhhhhhhhcccc-cccccccccccccccccccCCcc--ccCCCCCCEEECCCCCCCCCcccc
Confidence            33321  233444 4555555555444433 24444555555555555444432  444555555555555555444444


Q ss_pred             CCCCCCE
Q psy11652        276 HNKRLSH  282 (325)
Q Consensus       276 ~~~~L~~  282 (325)
                      .+++|++
T Consensus       192 ~L~~L~~  198 (199)
T d2omxa2         192 KLTNLES  198 (199)
T ss_dssp             GCTTCSE
T ss_pred             CCCCCCc
Confidence            4444444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=3.3e-18  Score=137.21  Aligned_cols=182  Identities=24%  Similarity=0.325  Sum_probs=131.0

Q ss_pred             ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEEeecC
Q psy11652         28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSVANN  105 (325)
Q Consensus        28 ~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l~~~  105 (325)
                      +.....+..+.+++...  . ..+ ..|++|+++++.+..++.+..+++|++|++++|.+.++..+  +++|+.|++++|
T Consensus        25 ~~i~~~l~~~~~~~~~~--~-~~L-~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n  100 (210)
T d1h6ta2          25 ETIKDNLKKKSVTDAVT--Q-NEL-NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN  100 (210)
T ss_dssp             HHHHHHTTCSCTTSEEC--H-HHH-HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred             HHHHHHhCcCccCCccC--H-HHh-cCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccccccCccccccccccc
Confidence            33444555565554333  1 233 67888888888877776677788888888888877777445  778888888888


Q ss_pred             cccchhhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCc
Q psy11652        106 YLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNL  184 (325)
Q Consensus       106 ~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  184 (325)
                      .++.+..+..+++|+.|+++++.+..++ ...+++++.++++++.++..+ .+..+++|+.+++.+|.++.+++ +...+
T Consensus       101 ~i~~l~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~-l~~l~  178 (210)
T d1h6ta2         101 KVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP-LAGLT  178 (210)
T ss_dssp             CCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc-ccCCC
Confidence            7777767777888888888888777666 666778888888888776642 35667888888888888776654 44558


Q ss_pred             cccEEEcccCCCcccChhhhhCccccCCEEEccC
Q psy11652        185 NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLEN  218 (325)
Q Consensus       185 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~  218 (325)
                      +|+.|++++|.+++++  .+.+++ +|+.|++++
T Consensus       179 ~L~~L~Ls~N~i~~l~--~l~~l~-~L~~L~Ls~  209 (210)
T d1h6ta2         179 KLQNLYLSKNHISDLR--ALAGLK-NLDVLELFS  209 (210)
T ss_dssp             TCCEEECCSSCCCBCG--GGTTCT-TCSEEEEEE
T ss_pred             CCCEEECCCCCCCCCh--hhcCCC-CCCEEEccC
Confidence            8888888888887763  477777 888888753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=3.4e-18  Score=137.15  Aligned_cols=177  Identities=24%  Similarity=0.356  Sum_probs=122.1

Q ss_pred             EECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEEeecCcccchhhhccCCCCCEEEccCCcceeec-C
Q psy11652         58 LFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFV-I  134 (325)
Q Consensus        58 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~  134 (325)
                      ..+..+.+.+......+.+|++|+++++.+..+.++  +++|++|++++|.++.+..+..+++|+.|++++|.++.++ .
T Consensus        29 ~~l~~~~~~~~~~~~~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~l  108 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSL  108 (210)
T ss_dssp             HHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGG
T ss_pred             HHhCcCccCCccCHHHhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccccccCccccccccccccccccccc
Confidence            344444444432223456777778877777776555  7778888888777777766677777888888777777776 6


Q ss_pred             CCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEE
Q psy11652        135 PNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFL  214 (325)
Q Consensus       135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L  214 (325)
                      ..+++|+.|+++++.+..++ .+.++++++.+++.+|.++.... ....++|+.+++++|.++++.  .+..++ +|++|
T Consensus       109 ~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~~~-~~~l~~L~~l~l~~n~l~~i~--~l~~l~-~L~~L  183 (210)
T d1h6ta2         109 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIV--PLAGLT-KLQNL  183 (210)
T ss_dssp             TTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCG--GGTTCT-TCCEE
T ss_pred             cccccccccccccccccccc-ccccccccccccccccccccccc-ccccccccccccccccccccc--cccCCC-CCCEE
Confidence            66777888888777766553 46667777778777777665432 334577778888877777654  366776 78888


Q ss_pred             EccCCCCcCchHhhhCCCCCCEEeCC
Q psy11652        215 DLENNRLTNINQCFRNLKKLKYLYLH  240 (325)
Q Consensus       215 ~l~~~~l~~~~~~~~~~~~L~~L~l~  240 (325)
                      ++++|.++.++ .+..+++|++|+++
T Consensus       184 ~Ls~N~i~~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         184 YLSKNHISDLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             ECCSSCCCBCG-GGTTCTTCSEEEEE
T ss_pred             ECCCCCCCCCh-hhcCCCCCCEEEcc
Confidence            88887777765 46777778777764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.73  E-value=4.8e-16  Score=133.99  Aligned_cols=248  Identities=21%  Similarity=0.288  Sum_probs=153.8

Q ss_pred             ccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEEee
Q psy11652         26 CILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSVA  103 (325)
Q Consensus        26 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l~  103 (325)
                      .++|++|++++|.|+.+|. .+     .+|+.|++.++.++.++.+.  +.|++|++++|.+..++.+  +++|++|+++
T Consensus        57 ~~~L~~L~Ls~N~l~~lp~-~~-----~~L~~L~l~~n~l~~l~~lp--~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~  128 (353)
T d1jl5a_          57 PPHLESLVASCNSLTELPE-LP-----QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLPELQNSSFLKIIDVD  128 (353)
T ss_dssp             CTTCSEEECCSSCCSSCCC-CC-----TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCCCCTTCTTCCEEECC
T ss_pred             CCCCCEEECCCCCCccccc-ch-----hhhhhhhhhhcccchhhhhc--cccccccccccccccccchhhhccceeeccc
Confidence            4689999999999998887 33     68999999998888766332  4689999999988877444  7889999988


Q ss_pred             cCcccchhhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCc--------------------cccchhhccCCCC
Q psy11652        104 NNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNL--------------------ISTINLNLNNTYY  162 (325)
Q Consensus       104 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~--------------------~~~~~~~~~~~~~  162 (325)
                      ++.+.....  ....+..+.+..+...... ...+..++.+.+.++.                    +... ..+..++.
T Consensus       129 ~~~~~~~~~--~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~~  205 (353)
T d1jl5a_         129 NNSLKKLPD--LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEEL-PELQNLPF  205 (353)
T ss_dssp             SSCCSCCCC--CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSC-CCCTTCTT
T ss_pred             ccccccccc--ccccccchhhccccccccccccccccceeccccccccccccccccccccccccccccccc-cccccccc
Confidence            876544311  1233444444433333222 3334444444444332                    2222 12456778


Q ss_pred             ccEEEccCCcCcccccCccCCccccEEEcccCCCcccChh---------------hhhCccccCCEEEccCCCCcCchHh
Q psy11652        163 IKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDF---------------AFNGLNSTLEFLDLENNRLTNINQC  227 (325)
Q Consensus       163 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~---------------~~~~~~~~L~~L~l~~~~l~~~~~~  227 (325)
                      ++.+++.+|....++..   ..++..+.+..+.+......               .+..++......++..+.+..+   
T Consensus       206 L~~l~l~~n~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~---  279 (353)
T d1jl5a_         206 LTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL---  279 (353)
T ss_dssp             CCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEE---
T ss_pred             ccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccchhcccccccCccccc---
Confidence            88888888876654432   24566666666655432210               0011111223333333333322   


Q ss_pred             hhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCCCCCCCCCCEEECCCCcCcccccc
Q psy11652        228 FRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILE  296 (325)
Q Consensus       228 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~i~~~~~~  296 (325)
                      ...+++|++|++++|+++.++.    .+++|+.|++++|+++.+|.  .+++|++|++++|+++.+|..
T Consensus       280 ~~~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~L~~l~~--~~~~L~~L~L~~N~L~~lp~~  342 (353)
T d1jl5a_         280 CDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE--LPQNLKQLHVEYNPLREFPDI  342 (353)
T ss_dssp             CCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSSCCCC
T ss_pred             cccCCCCCEEECCCCccCcccc----ccCCCCEEECCCCcCCcccc--ccCCCCEEECcCCcCCCCCcc
Confidence            2335778888888888887653    25688888888888888876  245788888888888888753

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.6e-18  Score=152.66  Aligned_cols=109  Identities=18%  Similarity=0.171  Sum_probs=59.3

Q ss_pred             ccccEEEcccCCCcccChhhh----hCccccCCEEEccCCCCcCc-----hHhhhCCCCCCEEeCCCCcccccccc----
Q psy11652        184 LNVFRLYLKFNKISEIHDFAF----NGLNSTLEFLDLENNRLTNI-----NQCFRNLKKLKYLYLHNNNIEFIQNN----  250 (325)
Q Consensus       184 ~~L~~L~l~~~~l~~~~~~~~----~~~~~~L~~L~l~~~~l~~~-----~~~~~~~~~L~~L~l~~~~l~~~~~~----  250 (325)
                      +.++.+++++|.++......+    ......++.++++++.++..     ...+..+++|++|++++|.++.....    
T Consensus       283 ~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~  362 (460)
T d1z7xw1         283 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ  362 (460)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhh
Confidence            455555555555543222111    11112567777777666521     22344556777777777776532111    


Q ss_pred             hh-ccCccCCEEEccCCCCcc-----cCC-CCCCCCCCEEECCCCcCcc
Q psy11652        251 TF-EHLVNLKSISLSGNKLTR-----IPD-FIHNKRLSHLNLGYNFLNE  292 (325)
Q Consensus       251 ~l-~~~~~L~~L~l~~n~l~~-----l~~-~~~~~~L~~L~l~~n~i~~  292 (325)
                      .+ ...+.|+.|++++|.++.     +.. +..+++|++|++++|+|+.
T Consensus       363 ~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             hhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence            12 234567777777777762     222 4556777777777777765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=9.2e-16  Score=120.93  Aligned_cols=125  Identities=28%  Similarity=0.346  Sum_probs=67.7

Q ss_pred             EEEccCCcCcccccCccCCccccEEEcccCCCcc-cChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCC
Q psy11652        165 DLILSYNQISKLNANTFRNLNVFRLYLKFNKISE-IHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNN  242 (325)
Q Consensus       165 ~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~  242 (325)
                      .++.++++++.+|..+.  +++++|++++|.++. .....|..++ +|+.|++++|.+..++. .+..+++|++|++++|
T Consensus        12 ~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~-~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCc-eEeeeeccccccccccccccccccccceeeeccc
Confidence            44455555555544321  455555555555543 3344455555 55555555555553332 4555555566666666


Q ss_pred             cccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcc
Q psy11652        243 NIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNE  292 (325)
Q Consensus       243 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~  292 (325)
                      ++..+++..|.++++|+.|+|++|+++.+++  |..+++|+++++++|++..
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            5555555555555566666666666655554  5555566666666655544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=2.1e-16  Score=124.69  Aligned_cols=125  Identities=26%  Similarity=0.304  Sum_probs=72.7

Q ss_pred             CEEEccCCcceeecCCCCCCccEEEccCCcccc-c-hhhccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCC
Q psy11652        120 KWIVLSNNYIKEFVIPNRKHIEKLDLSNNLIST-I-NLNLNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKI  196 (325)
Q Consensus       120 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l  196 (325)
                      ++++.++++++.+|..-..++++|++++|.++. + +..|.++++|+.|++.+|.+..++...+.. ++|+.|++++|.+
T Consensus        11 ~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l   90 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             CEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccc
Confidence            355566666666663334566666666666654 2 445566666666666666665555444443 6666666666666


Q ss_pred             cccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCccc
Q psy11652        197 SEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIE  245 (325)
Q Consensus       197 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~  245 (325)
                      +.+++..|.+++ +|+.|++++|.+..++. .|..+++|+++++++|.+.
T Consensus        91 ~~l~~~~F~~l~-~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          91 KEISNKMFLGLH-QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CEECSSSSTTCT-TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccCHHHHhCCC-cccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            666555566665 66666666666655543 4555556666666665554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=1.6e-14  Score=105.03  Aligned_cols=105  Identities=25%  Similarity=0.288  Sum_probs=78.7

Q ss_pred             cEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCC
Q psy11652        187 FRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN  266 (325)
Q Consensus       187 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n  266 (325)
                      +.|++++|.++.++  .+..++ .|++|++++|.++.+|..+..+++|+.|++++|.++.++  .+..+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~~l~--~l~~l~-~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLC--HLEQLL-LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCC--CGGGGT-TCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCc--ccccCC-CCCEEECCCCccCcchhhhhhhhcccccccccccccccC--ccccccccCeEECCCC
Confidence            46777777777664  366776 788888888888877777777888888888888877764  3677788888888888


Q ss_pred             CCcccCC---CCCCCCCCEEECCCCcCcccccc
Q psy11652        267 KLTRIPD---FIHNKRLSHLNLGYNFLNELILE  296 (325)
Q Consensus       267 ~l~~l~~---~~~~~~L~~L~l~~n~i~~~~~~  296 (325)
                      +++.++.   +..+++|+.+++++|+++.++..
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~  108 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  108 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccH
Confidence            8876664   67778888888888888766543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.5e-15  Score=113.33  Aligned_cols=125  Identities=20%  Similarity=0.204  Sum_probs=68.6

Q ss_pred             ccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCC
Q psy11652        157 LNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLK  235 (325)
Q Consensus       157 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~  235 (325)
                      +.++.++++|++.+|+++.++.....+++|+.|++++|.++.++  .+..++ +|++|++++|.+..++. .+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~-~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLR-RLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCS-SCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC--CcccCc-chhhhhcccccccCCCccccccccccc
Confidence            34445555555555555555433233355566666666555542  344555 66666666666655543 334556666


Q ss_pred             EEeCCCCccccccc-chhccCccCCEEEccCCCCcccCC-----CCCCCCCCEEE
Q psy11652        236 YLYLHNNNIEFIQN-NTFEHLVNLKSISLSGNKLTRIPD-----FIHNKRLSHLN  284 (325)
Q Consensus       236 ~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~l~~l~~-----~~~~~~L~~L~  284 (325)
                      .|++++|.+..+.. ..+..+++|+.+++++|.++..|.     +..+|+|+.|+
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            66666666555433 345556666666666666665543     45566666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.2e-14  Score=129.31  Aligned_cols=160  Identities=19%  Similarity=0.166  Sum_probs=110.2

Q ss_pred             CCCCccEEEccCCccccc-----hhhccCCCCccEEEccCCcCcc-----cccCccC-CccccEEEcccCCCcccChhhh
Q psy11652        136 NRKHIEKLDLSNNLISTI-----NLNLNNTYYIKDLILSYNQISK-----LNANTFR-NLNVFRLYLKFNKISEIHDFAF  204 (325)
Q Consensus       136 ~~~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~  204 (325)
                      ....++.+++++|.+...     ...+...+.++.+++++|.++.     +...... ...++.++++++.++......+
T Consensus       253 ~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l  332 (460)
T d1z7xw1         253 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF  332 (460)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhc
Confidence            456677777777766533     2334556778888888877652     1111222 2689999999999886654444


Q ss_pred             h----CccccCCEEEccCCCCcC-----chHhhh-CCCCCCEEeCCCCcccccc----cchhccCccCCEEEccCCCCcc
Q psy11652        205 N----GLNSTLEFLDLENNRLTN-----INQCFR-NLKKLKYLYLHNNNIEFIQ----NNTFEHLVNLKSISLSGNKLTR  270 (325)
Q Consensus       205 ~----~~~~~L~~L~l~~~~l~~-----~~~~~~-~~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~L~l~~n~l~~  270 (325)
                      .    ..+ +|++|++++|.++.     ++..+. ..+.|++|++++|.++...    ...+..+++|++|++++|.++.
T Consensus       333 ~~~~~~~~-~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         333 SSVLAQNR-FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHHHHCS-SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             cccccccc-chhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence            3    344 89999999999862     333443 4678999999999997532    2345667999999999999982


Q ss_pred             -----cCC-C-CCCCCCCEEECCCCcCcccccc
Q psy11652        271 -----IPD-F-IHNKRLSHLNLGYNFLNELILE  296 (325)
Q Consensus       271 -----l~~-~-~~~~~L~~L~l~~n~i~~~~~~  296 (325)
                           +.. + .....|+.+++.+|.+.....+
T Consensus       412 ~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~  444 (460)
T d1z7xw1         412 AGILQLVESVRQPGCLLEQLVLYDIYWSEEMED  444 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred             HHHHHHHHHHHhCCCccCEEECCCCCCCHHHHH
Confidence                 211 2 2445799999999998764443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=9.4e-15  Score=111.51  Aligned_cols=125  Identities=22%  Similarity=0.198  Sum_probs=63.5

Q ss_pred             CCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEE
Q psy11652        136 NRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLD  215 (325)
Q Consensus       136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~  215 (325)
                      ...++++|++++|.++.++..+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.+++..+..++ +++.|+
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~-~L~~L~   93 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALP-DLTELI   93 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCT-TCCEEE
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccccc-ccccce
Confidence            344555555555555555433444555555555555555442 223335555555555555555444444454 555555


Q ss_pred             ccCCCCcCchH--hhhCCCCCCEEeCCCCccccccc---chhccCccCCEEE
Q psy11652        216 LENNRLTNINQ--CFRNLKKLKYLYLHNNNIEFIQN---NTFEHLVNLKSIS  262 (325)
Q Consensus       216 l~~~~l~~~~~--~~~~~~~L~~L~l~~~~l~~~~~---~~l~~~~~L~~L~  262 (325)
                      +++|.+..++.  .+..+++|+++++.+|.++..+.   ..+..+++|+.||
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            55555554432  34455555555555555544331   2344455555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.7e-14  Score=120.61  Aligned_cols=233  Identities=15%  Similarity=0.170  Sum_probs=145.2

Q ss_pred             cEEECCCCcccccc---cccCCCCccEEEccCCCCccc--ccc-cCCccEEEeecCcccch---hhhccCCCCCEEEccC
Q psy11652         56 TTLFIGENHIHQIE---NLNGFRSILWLNMDSNLLQTL--DSL-PKTMETLSVANNYLVNY---LELNRMTSLKWIVLSN  126 (325)
Q Consensus        56 ~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~--~~l-~~~L~~L~l~~~~l~~~---~~~~~~~~L~~L~l~~  126 (325)
                      +.|+++++.+....   .+.  .....+.+........  ..+ ..+|++|+++++.+...   ..+.++++|++|.+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            46788877664211   121  1344555555443332  333 77899999988876544   5577889999999998


Q ss_pred             Cccee--ec-CCCCCCccEEEccCC-ccccc--hhhccCCCCccEEEccCC-cCcc--cccCccCC-ccccEEEcccC--
Q psy11652        127 NYIKE--FV-IPNRKHIEKLDLSNN-LISTI--NLNLNNTYYIKDLILSYN-QISK--LNANTFRN-LNVFRLYLKFN--  194 (325)
Q Consensus       127 ~~~~~--~~-~~~~~~L~~L~l~~~-~~~~~--~~~~~~~~~L~~L~l~~~-~l~~--~~~~~~~~-~~L~~L~l~~~--  194 (325)
                      +.++.  +. ...+++|++|++++| .++..  ...+.++++|++|++++| .++.  +....... ++|+.|+++++  
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  160 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence            87762  22 556788999999885 45433  334566788999999886 3331  22222233 67888888875  


Q ss_pred             CCcccChhh-hhCccccCCEEEccCC-CCc-CchHhhhCCCCCCEEeCCCC-cccccccchhccCccCCEEEccCCCCc-
Q psy11652        195 KISEIHDFA-FNGLNSTLEFLDLENN-RLT-NINQCFRNLKKLKYLYLHNN-NIEFIQNNTFEHLVNLKSISLSGNKLT-  269 (325)
Q Consensus       195 ~l~~~~~~~-~~~~~~~L~~L~l~~~-~l~-~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~L~l~~n~l~-  269 (325)
                      .++...... ...+| +|++|+++++ .++ .....+..+++|++|++++| .++......++.+++|+.|++.++ ++ 
T Consensus       161 ~i~~~~l~~l~~~~~-~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d  238 (284)
T d2astb2         161 NLQKSDLSTLVRRCP-NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD  238 (284)
T ss_dssp             GSCHHHHHHHHHHCT-TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred             ccccccccccccccc-cccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCH
Confidence            344322222 23456 8888888876 355 34446777888888888885 566544445677888888888876 33 


Q ss_pred             -ccCC-CCCCCCCCEEECCCCcCccccc
Q psy11652        270 -RIPD-FIHNKRLSHLNLGYNFLNELIL  295 (325)
Q Consensus       270 -~l~~-~~~~~~L~~L~l~~n~i~~~~~  295 (325)
                       .++. ...+|+|+   +..++++.+.+
T Consensus       239 ~~l~~l~~~lp~L~---i~~~~ls~~~~  263 (284)
T d2astb2         239 GTLQLLKEALPHLQ---INCSHFTTIAR  263 (284)
T ss_dssp             TCHHHHHHHSTTSE---ESCCCSCCTTC
T ss_pred             HHHHHHHHhCcccc---ccCccCCCCCC
Confidence             2222 23445544   46666666544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3e-14  Score=119.13  Aligned_cols=169  Identities=17%  Similarity=0.169  Sum_probs=86.7

Q ss_pred             CCCCccEEEccCCCCccc--ccc---cCCccEEEeecCcccch--hhhccCCCCCEEEccCC-ccee--ec--CCCCCCc
Q psy11652         73 GFRSILWLNMDSNLLQTL--DSL---PKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNN-YIKE--FV--IPNRKHI  140 (325)
Q Consensus        73 ~~~~L~~L~l~~~~~~~~--~~l---~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~-~~~~--~~--~~~~~~L  140 (325)
                      ...+|++|+++++.+...  ..+   +++|++|+++++.+...  ..+.++++|++|++++| .++.  +.  ...+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            344555555555544332  222   55555555555554433  44555566666666554 3331  11  2245566


Q ss_pred             cEEEccCCc-cccc--hhhcc-CCCCccEEEccCCc--Cc--ccccCccCCccccEEEcccC-CCcccChhhhhCccccC
Q psy11652        141 EKLDLSNNL-ISTI--NLNLN-NTYYIKDLILSYNQ--IS--KLNANTFRNLNVFRLYLKFN-KISEIHDFAFNGLNSTL  211 (325)
Q Consensus       141 ~~L~l~~~~-~~~~--~~~~~-~~~~L~~L~l~~~~--l~--~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~L  211 (325)
                      ++|++++|. ++..  ...+. .+++|+.|++.++.  ++  .+......+++|++|++++| .+++.....+..++ +|
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~-~L  202 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN-YL  202 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT-TC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccC-cC
Confidence            666666543 2221  22222 23556666666542  22  12221223366777777665 35544445566666 77


Q ss_pred             CEEEccCC-CCc-CchHhhhCCCCCCEEeCCCC
Q psy11652        212 EFLDLENN-RLT-NINQCFRNLKKLKYLYLHNN  242 (325)
Q Consensus       212 ~~L~l~~~-~l~-~~~~~~~~~~~L~~L~l~~~  242 (325)
                      ++|+++++ .++ .....++.+++|+.|++.++
T Consensus       203 ~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            77777774 444 22234666777777777766

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.51  E-value=5.3e-15  Score=127.34  Aligned_cols=229  Identities=16%  Similarity=0.186  Sum_probs=124.9

Q ss_pred             cCccEEECCCCcccccc------cccCCCCccEEEccCCCCccc------------ccc--cCCccEEEeecCcccch--
Q psy11652         53 NKLTTLFIGENHIHQIE------NLNGFRSILWLNMDSNLLQTL------------DSL--PKTMETLSVANNYLVNY--  110 (325)
Q Consensus        53 ~~L~~L~l~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~------------~~l--~~~L~~L~l~~~~l~~~--  110 (325)
                      ..|+.|+|++|.++...      .+...++|+.++++++.....            ..+  .++|+.|++++|.+...  
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            57778888877765432      456677777777776644322            111  34555555555544332  


Q ss_pred             ----hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc--hhhccCCCCccEEEccCCcCcc-----c
Q psy11652        111 ----LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI--NLNLNNTYYIKDLILSYNQISK-----L  176 (325)
Q Consensus       111 ----~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~-----~  176 (325)
                          ..+...++|++|++++|.+....   ..  ..          +...  .......+.|+.+.+.++.++.     +
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~--~~----------l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l  178 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA--RA----------LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW  178 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH--HH----------HHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred             cchhhhhcccccchheeccccccccccccccc--cc----------ccccccccccccCcccceeecccccccccccccc
Confidence                23334455555555555433100   00  00          0000  0011234455666666555442     1


Q ss_pred             ccCccCCccccEEEcccCCCccc-----ChhhhhCccccCCEEEccCCCCcC-----chHhhhCCCCCCEEeCCCCcccc
Q psy11652        177 NANTFRNLNVFRLYLKFNKISEI-----HDFAFNGLNSTLEFLDLENNRLTN-----INQCFRNLKKLKYLYLHNNNIEF  246 (325)
Q Consensus       177 ~~~~~~~~~L~~L~l~~~~l~~~-----~~~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~l~~  246 (325)
                      .......+.++.|++++|.++..     ....+...+ +|+.|++++|.++.     +...+..+++|++|++++|.++.
T Consensus       179 ~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~-~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         179 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT-TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             cchhhhhhhhcccccccccccccccccchhhhhcchh-hhcccccccccccccccccccccccccccchhhhhhcCccCc
Confidence            11112235666666666666532     122344555 77788887777652     33456777888888888887764


Q ss_pred             cccch----hcc--CccCCEEEccCCCCcc-----cCC-C-CCCCCCCEEECCCCcCcccc
Q psy11652        247 IQNNT----FEH--LVNLKSISLSGNKLTR-----IPD-F-IHNKRLSHLNLGYNFLNELI  294 (325)
Q Consensus       247 ~~~~~----l~~--~~~L~~L~l~~n~l~~-----l~~-~-~~~~~L~~L~l~~n~i~~~~  294 (325)
                      .....    +..  .+.|+.|++++|.++.     +.. + ..+++|+.|++++|.+....
T Consensus       258 ~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         258 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             hhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcc
Confidence            32222    222  3578888888888872     222 2 35678999999999887543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=9e-14  Score=100.92  Aligned_cols=103  Identities=27%  Similarity=0.329  Sum_probs=55.4

Q ss_pred             EEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcc
Q psy11652        165 DLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNI  244 (325)
Q Consensus       165 ~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l  244 (325)
                      .|++++|.++.++. +..+++|++|++++|.++.+++ .+..++ +|+.|++++|.++.++. +..+++|+.+++++|++
T Consensus         2 ~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~-~~~~l~-~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           2 VLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAALR-CLEVLQASDNALENVDG-VANLPRLQELLLCNNRL   77 (124)
T ss_dssp             EEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG-GGGGCT-TCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCC
T ss_pred             EEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchh-hhhhhh-cccccccccccccccCc-cccccccCeEECCCCcc
Confidence            44555555554432 3333555555555555555432 345555 56666666665555543 55556666666666665


Q ss_pred             ccccc-chhccCccCCEEEccCCCCccc
Q psy11652        245 EFIQN-NTFEHLVNLKSISLSGNKLTRI  271 (325)
Q Consensus       245 ~~~~~-~~l~~~~~L~~L~l~~n~l~~l  271 (325)
                      +.++. ..+..+++|+.+++++|.++..
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            55432 3455556666666666665533

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=2.2e-13  Score=117.02  Aligned_cols=149  Identities=14%  Similarity=0.093  Sum_probs=90.8

Q ss_pred             hcccccceEEcCCCceeeecCCCc---CcccccCccEEECCCCccccc----c--------cccCCCCccEEEccCCCCc
Q psy11652         24 ISCILLMSAENEDNQIAELETANW---SPEIQNKLTTLFIGENHIHQI----E--------NLNGFRSILWLNMDSNLLQ   88 (325)
Q Consensus        24 ~~~~~L~~L~l~~~~i~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~----~--------~~~~~~~L~~L~l~~~~~~   88 (325)
                      ..+..+++|++++|.|.......+   .... +.|+.|+++++.....    +        .+..+++|++|++++|.+.
T Consensus        28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGTEAARWLSENIASK-KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTC-TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             hhCCCCCEEECcCCcCCHHHHHHHHHHHHhC-CCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            467899999999998874332222   0333 8999999987754422    1        5678899999999999887


Q ss_pred             cc--c----cc--cCCccEEEeecCcccch--h-------------hhccCCCCCEEEccCCccee-----ec--CCCCC
Q psy11652         89 TL--D----SL--PKTMETLSVANNYLVNY--L-------------ELNRMTSLKWIVLSNNYIKE-----FV--IPNRK  138 (325)
Q Consensus        89 ~~--~----~l--~~~L~~L~l~~~~l~~~--~-------------~~~~~~~L~~L~l~~~~~~~-----~~--~~~~~  138 (325)
                      ..  .    .+  .++|++|++++|.+...  .             .....+.|+.+.++.+.+..     +.  ....+
T Consensus       107 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~  186 (344)
T d2ca6a1         107 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR  186 (344)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred             cccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhh
Confidence            65  2    22  78999999999976543  1             12344566666666655431     11  12344


Q ss_pred             CccEEEccCCccccc------hhhccCCCCccEEEccCCcC
Q psy11652        139 HIEKLDLSNNLISTI------NLNLNNTYYIKDLILSYNQI  173 (325)
Q Consensus       139 ~L~~L~l~~~~~~~~------~~~~~~~~~L~~L~l~~~~l  173 (325)
                      +++.|++++|.++..      ...+..+++|+.|++++|.+
T Consensus       187 ~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i  227 (344)
T d2ca6a1         187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF  227 (344)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred             hhcccccccccccccccccchhhhhcchhhhcccccccccc
Confidence            555555555554321      12234444455555554443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.36  E-value=1.2e-14  Score=114.66  Aligned_cols=124  Identities=20%  Similarity=0.352  Sum_probs=85.8

Q ss_pred             cccceEEcCCC--ceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc---cCCccEEE
Q psy11652         27 ILLMSAENEDN--QIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL---PKTMETLS  101 (325)
Q Consensus        27 ~~L~~L~l~~~--~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l---~~~L~~L~  101 (325)
                      ...+.+++.+.  .++.++. .+ ..+ ++|++|++++|.++.++.+.++++|++|++++|.+..++.+   +++|+.|+
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~-sl-~~L-~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDA-TL-STL-KACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELW   99 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHH-HH-HHT-TTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEE
T ss_pred             cccceeeeecccCchhhhhh-HH-hcc-cccceeECcccCCCCcccccCCccccChhhcccccccccccccccccccccc
Confidence            34455555543  3455554 45 555 78888888888887777777778888888888877776433   56788888


Q ss_pred             eecCcccchhhhccCCCCCEEEccCCcceeec----CCCCCCccEEEccCCccccc
Q psy11652        102 VANNYLVNYLELNRMTSLKWIVLSNNYIKEFV----IPNRKHIEKLDLSNNLISTI  153 (325)
Q Consensus       102 l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~  153 (325)
                      +++|.++.+..+..+++|+.|++++|.++.++    +..+++|+.|++++|.+...
T Consensus       100 l~~N~i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         100 ISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             CSEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             cccccccccccccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence            88887777766777777888888777776543    45677777777777766543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.26  E-value=2.2e-13  Score=107.32  Aligned_cols=112  Identities=29%  Similarity=0.314  Sum_probs=61.3

Q ss_pred             hhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCC
Q psy11652        154 NLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKK  233 (325)
Q Consensus       154 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~  233 (325)
                      +..+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.++. .+..++ +|+.|++++|.++.++. +..+++
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~-~~~~~~-~L~~L~l~~N~i~~l~~-~~~l~~  116 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIEN-LDAVAD-TLEELWISYNQIASLSG-IEKLVN  116 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSS-HHHHHH-HCCEEECSEEECCCHHH-HHHHHH
T ss_pred             hhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccc-cccccc-ccccccccccccccccc-cccccc
Confidence            444555566666666666555553 23333566666666666555432 222233 56666666666655543 445556


Q ss_pred             CCEEeCCCCccccccc-chhccCccCCEEEccCCCCc
Q psy11652        234 LKYLYLHNNNIEFIQN-NTFEHLVNLKSISLSGNKLT  269 (325)
Q Consensus       234 L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~l~  269 (325)
                      |+.|++++|+++.+.. ..+..+++|+.|++++|.+.
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccc
Confidence            6666666666655432 24555666666666666554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=6.2e-11  Score=89.25  Aligned_cols=103  Identities=22%  Similarity=0.266  Sum_probs=67.5

Q ss_pred             cEEEcccCCCcccChhhhhCccccCCEEEccCC-CCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEcc
Q psy11652        187 FRLYLKFNKISEIHDFAFNGLNSTLEFLDLENN-RLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS  264 (325)
Q Consensus       187 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~  264 (325)
                      ..++..++.+...+ ..+.+++ ++++|++.++ .++.++. .|.++++|+.|++++|+++.+++..|.++++|+.|+|+
T Consensus        11 ~~l~c~~~~~~~~p-~~l~~l~-~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          11 SGLRCTRDGALDSL-HHLPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SCEECCSSCCCTTT-TTSCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CeEEecCCCCccCc-ccccCcc-ccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            34555555554442 2344555 6777777654 4665553 56677777777777777777777677777777777777


Q ss_pred             CCCCcccCC-CCCCCCCCEEECCCCcCc
Q psy11652        265 GNKLTRIPD-FIHNKRLSHLNLGYNFLN  291 (325)
Q Consensus       265 ~n~l~~l~~-~~~~~~L~~L~l~~n~i~  291 (325)
                      +|+++.+|. .....+|+.|++++|++.
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCCcccChhhhccccccccccCCCccc
Confidence            777777776 333346778888888774

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.2e-10  Score=87.58  Aligned_cols=102  Identities=17%  Similarity=0.112  Sum_probs=45.8

Q ss_pred             EEEccCCccccchhhccCCCCccEEEccCC-cCcccccCccCC-ccccEEEcccCCCcccChhhhhCccccCCEEEccCC
Q psy11652        142 KLDLSNNLISTINLNLNNTYYIKDLILSYN-QISKLNANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENN  219 (325)
Q Consensus       142 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~  219 (325)
                      .+++.++.+...|..+..+++|++|++.++ .++.++...+.. ++|+.|++++|.++.+++.+|..++ +|+.|++++|
T Consensus        12 ~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~-~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP-RLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS-CCCEEECCSS
T ss_pred             eEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccc-cccceeccCC
Confidence            344444444444444444445555555433 244444433332 4444444444444444444444444 4555555544


Q ss_pred             CCcCchHhhhCCCCCCEEeCCCCcc
Q psy11652        220 RLTNINQCFRNLKKLKYLYLHNNNI  244 (325)
Q Consensus       220 ~l~~~~~~~~~~~~L~~L~l~~~~l  244 (325)
                      +++.++........++.|++++|.+
T Consensus        91 ~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          91 ALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCcccChhhhccccccccccCCCcc
Confidence            4444443222223344444444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.6e-07  Score=70.62  Aligned_cols=63  Identities=27%  Similarity=0.347  Sum_probs=31.5

Q ss_pred             CccccCCEEEccCCCCcCch---HhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCc
Q psy11652        206 GLNSTLEFLDLENNRLTNIN---QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT  269 (325)
Q Consensus       206 ~~~~~L~~L~l~~~~l~~~~---~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~  269 (325)
                      .++ +|++|++++|+++.++   ..+..+++|+.|++++|.++.+.+........|+.+++++|.+.
T Consensus        63 ~~~-~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCT-TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hCC-CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            344 5555555555555332   23445555555555555555544432233334555555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.2e-06  Score=65.53  Aligned_cols=69  Identities=29%  Similarity=0.323  Sum_probs=45.7

Q ss_pred             hhhCCCCCCEEeCCCCccccccc--chhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCccccc
Q psy11652        227 CFRNLKKLKYLYLHNNNIEFIQN--NTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELIL  295 (325)
Q Consensus       227 ~~~~~~~L~~L~l~~~~l~~~~~--~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~  295 (325)
                      .+..+++|++|++++|+++.+.+  ..+..+++|+.|++++|.++++++  ......|+.+++++|++.....
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcc
Confidence            44567777777777777776542  345567777777777777777665  3334467777777777765443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.83  E-value=2e-05  Score=58.93  Aligned_cols=62  Identities=8%  Similarity=0.056  Sum_probs=28.4

Q ss_pred             hhCCCCCCEEeCCCCccccccc----chhccCccCCEEEccCCCCccc--------CC-CCCCCCCCEEECCCCc
Q psy11652        228 FRNLKKLKYLYLHNNNIEFIQN----NTFEHLVNLKSISLSGNKLTRI--------PD-FIHNKRLSHLNLGYNF  289 (325)
Q Consensus       228 ~~~~~~L~~L~l~~~~l~~~~~----~~l~~~~~L~~L~l~~n~l~~l--------~~-~~~~~~L~~L~l~~n~  289 (325)
                      +...+.|++|++++|.++....    ..+...++|++|++++|.+..+        .. +...++|+.++++.+.
T Consensus        68 L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          68 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             hhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            3344445555555554442111    1233334555555555543321        11 3445666677665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.81  E-value=2.1e-05  Score=58.90  Aligned_cols=59  Identities=17%  Similarity=0.136  Sum_probs=27.9

Q ss_pred             ccccEEEcccCCCcccCh----hhhhCccccCCEEEccCCCCcC-----chHhhhCCCCCCEEeCCCCc
Q psy11652        184 LNVFRLYLKFNKISEIHD----FAFNGLNSTLEFLDLENNRLTN-----INQCFRNLKKLKYLYLHNNN  243 (325)
Q Consensus       184 ~~L~~L~l~~~~l~~~~~----~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~  243 (325)
                      +.|++|++++|.++....    ..+...+ +|++|++++|.++.     +...+...++|++|++.+|.
T Consensus        44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~-~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          44 KHIEKFSLANTAISDSEARGLIELIETSP-SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCS-SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             CccceeeccccccchhHHHHHhhhhhhcc-cccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            555555555555543211    1222333 55555555555541     12234445555555555553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.36  E-value=2.7e-05  Score=58.19  Aligned_cols=64  Identities=13%  Similarity=0.009  Sum_probs=30.0

Q ss_pred             cccccceEEcCC-CceeeecCCCcC---cccccCccEEECCCCcccccc------cccCCCCccEEEccCCCCcc
Q psy11652         25 SCILLMSAENED-NQIAELETANWS---PEIQNKLTTLFIGENHIHQIE------NLNGFRSILWLNMDSNLLQT   89 (325)
Q Consensus        25 ~~~~L~~L~l~~-~~i~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~   89 (325)
                      +++.|++|++++ +.++.-....+.   ... ++|++|++++|.++...      .+...+.++.++++++.+..
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n-~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~   88 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG   88 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcC-CccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccc
Confidence            455666666655 344422221120   112 45666666655554322      33445555555555554443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.17  E-value=0.00019  Score=53.29  Aligned_cols=16  Identities=13%  Similarity=0.212  Sum_probs=8.6

Q ss_pred             CCCCCCCCEEECCCCc
Q psy11652        274 FIHNKRLSHLNLGYNF  289 (325)
Q Consensus       274 ~~~~~~L~~L~l~~n~  289 (325)
                      +..+++|+.|+++.+.
T Consensus       128 L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         128 LEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHCSSCCEEECCCSS
T ss_pred             HHhCCCcCEEeCcCCC
Confidence            3455566666665443