Psyllid ID: psy11659

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680----
Protein Sequence
MNNTQEDQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCNRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLIATAFYNLALQKQRQTADNRLASITFSQQPQSFLTKQRQASRRNVRPVAPS
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHccccccccHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHccccccccccEEEHHHHHHHHHHHHHHHHHHHccccHHcccccHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcHcccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MNNTQEDQSELCNILLKWLQTFtlvaphqsladiTDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYFDQALgefgkvdvhkIVENIDAKELARLMQLILGCAINCNRKQNYITKIMELEESVQQVIMQSIQELENlhgsthslnmsldPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQenfveptnkgnssMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTlgenldlsedsvpITELRQKLVRLTHENNMlqmnqkddiegKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNlrkknddkdKMLDDLEKTLEKKEQQEKLIATAFYNLALQKQRQTADNRLasitfsqqpqsfLTKQrqasrrnvrpvaps
Flexible Loop (DISEMBL)
MNNTQEDQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCNRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRleerfqenfveptnkgnssmrRQMDALKEELFkaesarddyRIKLEIQSKQMEDLELKLNSLeetagearylkdeVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEEtkradksefenkklqekvtslqrekekliverdslketnEELKCCQLQQSKSAELNTLgenldlsedsvPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMktlenrkanqRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANsafklldptVQNVAALNelknlrkknddkdkMLDDLEKTLEKKEQQEKLIATAFYNLALQKQRQTADNRLAsitfsqqpqsfltkqrqasrrnvrpvaps
Low Complexity Region (SEG)
MNNTQEDQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCNRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAAlnelknlrkknddkdkmlddlektlekkeqqeklIATAFYNLALQKQRQTADNRLASITFSQQPQSFLTKQRQASRRNVRPVAPS
Disordered region (IsUnstruct)
**********LCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCNRKQNYITKIMELEESVQQVIMQSIQELENL*************QVQNLVAELQTVIDARDQMAQRCMEL****************************************************************************************ARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLK**********LSYIQQ****************************************************************************************************************LVRL****************GKLNIVNAKLDDV*********************************AGMKVKIFELQN*****************************************************AFKLLDPTVQNVAA*********************************LIATAFYNLALQ****************************************
Disordered Region (DISOPRED)
**********LCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFS****************RLKISNLKKINEGIVDYFQEYFDQALGEFGKV***********KELARLMQLILGCAI*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************AF**********************************************
Disordered Region (DISEMBL)
*********ELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCNRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNE***********NKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLIATAFYNLALQKQRQTADNRLASITFSQQ**********************
Disordered Region (DISPRO)
**NTQEDQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCNRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQ*****************DSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLIATAFYNLALQKQRQTADNRLASI***************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNNTQEDQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCNRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFQENFVEPTNKGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKDEVDIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLKKNGNWKSQVDMYKKQMSELYNQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLKCCQLQQSKSAELNTLGENLDLSEDSVPxxxxxxxxxxxxxxxxxxxxxQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDxxxxxxxxxxxxxxxxxxxxxxxxxxxxHLEQGKLxxxxxxxxxxxxxxxxxxxxxxxxxxxxANSAFKLLDPTVQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFYNLALQKQRQTADNRLASITFSQQPQSFLTKQRQASRRNVRPVAPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	684	2.2.26 [Sep-21-2011]
B6MFW3	723	Protein Hook homolog OS=B	yes	N/A	0.967	0.915	0.417	1e-140
Q86VS8	718	Protein Hook homolog 3 OS	yes	N/A	0.982	0.935	0.429	1e-134
Q6GQ73	719	Protein Hook homolog 3 OS	N/A	N/A	0.983	0.936	0.420	1e-133
Q8BUK6	718	Protein Hook homolog 3 OS	yes	N/A	0.978	0.931	0.427	1e-133
Q5TZ80	715	Protein Hook homolog 1 OS	yes	N/A	0.975	0.932	0.392	1e-123
Q5ZJ27	718	Protein Hook homolog 1 OS	no	N/A	0.978	0.931	0.374	1e-115
Q8BIL5	728	Protein Hook homolog 1 OS	no	N/A	0.947	0.890	0.375	1e-111
Q9UJC3	728	Protein Hook homolog 1 OS	no	N/A	0.942	0.885	0.380	1e-111
Q17AF4	685	Protein hook OS=Aedes aeg	N/A	N/A	0.937	0.935	0.382	1e-108
B0WPU9	691	Protein hook OS=Culex qui	N/A	N/A	0.938	0.929	0.375	1e-106

>sp|B6MFW3|HOOK_BRAFL Protein Hook homolog OS=Branchiostoma floridae GN=BRAFLDRAFT_281537 PE=3 SV=1

 Score =  501 bits (1289), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 294/705 (41%), Positives = 449/705 (63%), Gaps = 43/705 (6%)

Query: 7   DQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGA 66
           D++ELC  L++WLQTF L APH+++ D+ DGVAM++AL QIAP++FSE W  KIK D G 
Sbjct: 2   DKTELCECLVQWLQTFNLNAPHKTVEDLGDGVAMSEALCQIAPDYFSESWFGKIKQDAG- 60

Query: 67  NNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCA 126
            NWRL++SNLKK+  G++DY+ E   Q + +F   DV  I EN D +E+ RL+QLILGCA
Sbjct: 61  ENWRLRMSNLKKVLTGVLDYYSEVLGQQINDFTLPDVTSIAENYDVEEMGRLLQLILGCA 120

Query: 127 INCNRKQNYITKIMELEESVQQVIMQSIQELENLHG-STHSLNMSLDPQVQNLVAELQTV 185
           +NC+RKQ YI  IM +EE+VQ  +M +IQEL N    ++  +   ++ Q+++ + EL  V
Sbjct: 121 VNCDRKQEYIQNIMGMEEAVQHAVMNAIQELMNKEAPASPGVLPEVEKQLRDTMEELNEV 180

Query: 186 IDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQ-----ENFVEPTNKGNSSMR 240
             A++++AQRC ELDMQV  L EE + +  EK  L ++       E+   P  +    + 
Sbjct: 181 RAAKEEIAQRCHELDMQVQQLMEENTLMKVEKDELSDKVNQVDGYEDTSTPAGRRYIQLT 240

Query: 241 RQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRE 300
            Q++ L+EE ++ E+ RD+YR+K E   K++ DL  K   L   A E + LKDE+DILR+
Sbjct: 241 HQVEQLQEETYRLETGRDEYRLKCEEMEKEILDLAGKNEELMALAAETQLLKDEMDILRQ 300

Query: 301 TAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQV 360
           +AEK  KYE  IETYKKK E+L DL++ V+QL+ +  +Y  +T     EL+K    +SQ+
Sbjct: 301 SAEKTSKYEQTIETYKKKLEDLADLRRTVEQLQEE--TYRLETGLSHCELRKANTLRSQL 358

Query: 361 DMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420
           DMYKKQ+ EL+ + +EETKRADK+EFE K+  EK+ ++Q+EK++++ ERD+LKETNEEL 
Sbjct: 359 DMYKKQVQELHGKVSEETKRADKAEFELKRSTEKLDTVQKEKQRIVNERDTLKETNEELH 418

Query: 421 CCQLQQSK-----SAELNTLGENLDLSEDSVPI-----TELRQKLVRLTHENNMLQMNQK 470
           C QLQQ K     +  L  +G N++ S    PI      E+++KL+RL HEN ML++  +
Sbjct: 419 CMQLQQGKAMLYSTGSLAGIGSNVE-SPVGSPIPEVVPPEIKEKLIRLQHENKMLKLKAE 477

Query: 471 DDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTE-----------D 519
              + +L +  A LDD   +      ENR ANQRILEL+ +L++  TE           D
Sbjct: 478 GSDDERLAVSQAMLDDAQARTNELETENRLANQRILELQGQLEDMQTEQEEVGSPAKDQD 537

Query: 520 AAGMKVKIFELQNEIKNLKEQINHQQE--EHLE-----QGKLIEKLQDSITQKDSEIQDY 572
           +  ++ K+ E   ++K+   Q+  ++E  ++LE       + I++LQ+ + +KD +++  
Sbjct: 538 SVALRKKLEEHMEKLKDADSQLQKKKEYIDNLEPKVSSSAEKIQQLQEMLNKKDDDMKAM 597

Query: 573 EEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEK----KE 628
           EE+ ++Y+EKA S  + LDP  QN ++  E++ L+ +  +K++++D LE+  EK    +E
Sbjct: 598 EERYKRYLEKAKSVIRTLDPK-QNQSSTPEVQALKNQLTEKERLIDHLERDHEKAKLTRE 656

Query: 629 QQEKLIATAFYNLALQKQRQTADNRLASITFSQQPQSFLTKQRQA 673
           Q+EKLI +A+YN+  Q  R+  + RLA+    Q  QSFL +QRQA
Sbjct: 657 QEEKLIVSAWYNMGAQLHRKAVEGRLANGGPMQGGQSFLARQRQA 701

May function to promote vesicle trafficking and/or fusion. May act to link a number of membrane-bound organelles to the cytoskeleton.
Branchiostoma floridae (taxid: 7739)

>sp|Q86VS8|HOOK3_HUMAN Protein Hook homolog 3 OS=Homo sapiens GN=HOOK3 PE=1 SV=2

 Score =  480 bits (1235), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 307/714 (42%), Positives = 457/714 (64%), Gaps = 42/714 (5%)

Query: 7   DQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGA 66
           +++ELC  LL W+QTF + AP Q++ D+T+GV MAQ L +I P +F E WL +IKT++G 
Sbjct: 8   ERAELCESLLTWIQTFNVDAPCQTVEDLTNGVVMAQVLQKIDPAYFDENWLNRIKTEVG- 66

Query: 67  NNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCA 126
           +NWRLKISNLKKI +GI+DY  E   Q + +F   DV+ I E+ DA EL R++QLILGCA
Sbjct: 67  DNWRLKISNLKKILKGILDYNHEILGQQINDFTLPDVNLIGEHSDAAELGRMLQLILGCA 126

Query: 127 INCNRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLN---MSLDPQVQNLVAELQ 183
           +NC +KQ YI  IM +EESVQ V+M +IQEL +      + N   + LD Q++    EL 
Sbjct: 127 VNCEQKQEYIQAIMMMEESVQHVVMTAIQELMSKESPVSAGNDAYVDLDRQLKKTTEELN 186

Query: 184 TVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERF-QENFVE----PTNKGNSS 238
             + A++++AQRC ELDMQV+ LQEEKS L+ E + L ER  Q + +E    P  + +  
Sbjct: 187 EALSAKEEIAQRCHELDMQVAALQEEKSSLLAENQVLMERLNQSDSIEDPNSPAGRRHLQ 246

Query: 239 MRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDIL 298
           ++ Q++ L+EE F+ E+A+DDYRI+ E   K++ +L  + + L   A EA+ LKDE+D+L
Sbjct: 247 LQTQLEQLQEETFRLEAAKDDYRIRCEELEKEISELRQQNDELTTLADEAQSLKDEIDVL 306

Query: 299 RETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKS 358
           R +++KV K EG +E+YKKK E+L DL++QVK LE KN  Y+Q T+ LEEEL+K    +S
Sbjct: 307 RHSSDKVSKLEGQVESYKKKLEDLGDLRRQVKLLEEKNTMYMQNTVSLEEELRKANAARS 366

Query: 359 QVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEE 418
           Q++ YK+Q+ EL N+ +EE+K+ADK +FE K+L+EKV SLQ+EK++L  ERDSLKET EE
Sbjct: 367 QLETYKRQVVELQNRLSEESKKADKLDFEYKRLKEKVDSLQKEKDRLRTERDSLKETIEE 426

Query: 419 LKCCQLQQSK--SAELNTLG--ENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIE 474
           L+C Q Q+ +  +  L  LG  E+ D     +   E+R+KL+RL HEN ML++NQ+    
Sbjct: 427 LRCVQAQEGQLTTQGLMPLGSQESSDSLAAEIVTPEIREKLIRLQHENKMLKLNQEGSDN 486

Query: 475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKE---------RVTEDAAGMKV 525
            K+ ++ + LDD   +      ENR  NQR+LE++++++E            ED+  +K 
Sbjct: 487 EKIALLQSLLDDANLRKNELETENRLVNQRLLEVQSQVEELQKSLQDQGSKAEDSVLLKK 546

Query: 526 -------KIFELQNEIKNLKEQINHQQEEHLEQGKL-IEKLQDSITQKDSEIQDYEEKNR 577
                  K+ E  NE++  K  I    E       L IE+LQ+++ +K+ E++  EE+ +
Sbjct: 547 KLEEHLEKLHEANNELQK-KRAIIEDLEPRFNNSSLKIEELQEALRKKEEEMKQMEERYK 605

Query: 578 KYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEK----KEQQEKL 633
           KY+EKA S  + LDP  QN  A  E++ L+ +  ++D++   LEK  EK    +E +EK 
Sbjct: 606 KYLEKAKSVIRTLDPK-QNQGAAPEIQALKNQLQERDRLFHSLEKEYEKTKSQREMEEKY 664

Query: 634 IATAFYNLALQKQRQTADNRLASITFSQQPQSFLTKQRQA-SRRNVRP--VAPS 684
           I +A+YN+ +   ++ A++RLAS   +   QSFL +QRQA S R   P  V P+
Sbjct: 665 IVSAWYNMGMTLHKKAAEDRLAS---TGSGQSFLARQRQATSSRRSYPGHVQPA 715

Probably serves as a target for the spiC protein from Salmonella typhimurium, which inactivates it, leading to a strong alteration in cellular trafficking (By similarity). Component of the FTS/Hook/FHIP complex (FHF complex). The FHF complex may function to promote vesicle trafficking and/or fusion via the homotypic vesicular protein sorting complex (the HOPS complex). May regulate clearance of endocytosed receptors such as MSR1. Participates in defining the architecture and localization of the Golgi complex.

Homo sapiens (taxid: 9606)

>sp|Q6GQ73|HOOK3_XENLA Protein Hook homolog 3 OS=Xenopus laevis GN=hook3 PE=2 SV=1

 Score =  475 bits (1223), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 301/716 (42%), Positives = 449/716 (62%), Gaps = 43/716 (6%)

Query: 7   DQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGA 66
           D+ +LC  LL W+QTF + AP +++ D+T GVAMA  L +I P +F E WL +IKTD+G 
Sbjct: 5   DRVDLCESLLTWIQTFHVDAPCKTVEDLTSGVAMAMVLQKIDPVYFDENWLNRIKTDVG- 63

Query: 67  NNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCA 126
           +NWRLKISNLKKI +GI+DY  E     + +F   DV  I E+ DA EL R++QLILGCA
Sbjct: 64  DNWRLKISNLKKILKGILDYNHEILGHQVNDFTLPDVILIGEHSDASELGRMLQLILGCA 123

Query: 127 INCNRKQNYITKIMELEESVQQVIMQSIQEL---ENLHGSTHSLNMSLDPQVQNLVAELQ 183
           + C +KQ YI  IM +EESVQ V+M +IQEL   E            LD Q++    EL 
Sbjct: 124 VKCEQKQEYIQAIMMMEESVQHVVMTAIQELMSKETPVSIGTDAYAELDRQLKKANEELN 183

Query: 184 TVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQ-----ENFVEPTNKGNSS 238
             + A++++AQRC ELDMQV+ LQEEKS L+ E + L ER       E+   P  + +  
Sbjct: 184 DALSAKEEIAQRCHELDMQVAGLQEEKSSLLAENQILMERMNQSDSLEDPNSPAGRRHLQ 243

Query: 239 MRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDIL 298
           ++ Q++ L+EE F+ E+++DDYRI+ E   K++ +   +   L   A EA+ LKDE+D+L
Sbjct: 244 LQTQLEQLQEETFRLEASKDDYRIRCEELEKEITEFRQQNEDLITLADEAQSLKDEMDVL 303

Query: 299 RETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKS 358
           R +++KV K E  +++YKKK E+L DL++QVK LE KN  Y+Q T+ LEEEL+K    +S
Sbjct: 304 RHSSDKVAKLESQVDSYKKKLEDLGDLRRQVKLLEEKNTMYMQNTVSLEEELRKANAARS 363

Query: 359 QVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEE 418
           Q++ YK+Q+ EL N+ +EE+K+ADK EFE K+L+EK+ SLQ+EK++L  ERDSLKET EE
Sbjct: 364 QLETYKRQVVELQNRLSEESKKADKLEFEYKRLKEKIDSLQKEKDRLRSERDSLKETIEE 423

Query: 419 LKCCQLQQSK--SAELNTLG--ENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIE 474
           L+C Q Q+ +  SA L  LG  E  D     +   E+++KL+RL HEN ML++NQ+    
Sbjct: 424 LRCVQAQEGQLTSAGLMPLGNQEPTDSLAAEIVTPEIKEKLIRLQHENKMLKINQEGSDN 483

Query: 475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKE---------RVTEDAAGMKV 525
            K++++ + LDD   +      ENR  NQR++E++++++E           TED+  +K 
Sbjct: 484 EKISLLQSLLDDANMRKNELETENRLVNQRLIEMQSQVEELQKSLQEQGAKTEDSLLLKK 543

Query: 526 -------KIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRK 578
                  K+ E  NE++  +  I   +  +      IE+LQD++ +K+ +++  EE+ +K
Sbjct: 544 KLEEHLEKLHEANNELQKKRAIIEDLEPRYNNSSMKIEELQDALRKKEEDMKQMEERYKK 603

Query: 579 YIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEK----KEQQEKLI 634
           Y+EKA S  + LDP  QN     E++ L+ +  ++DKM   LEK  EK    ++Q+EKLI
Sbjct: 604 YLEKAKSVIRTLDPK-QNQGTGPEIQALKNQLQERDKMFVSLEKEFEKTKTQRDQEEKLI 662

Query: 635 ATAFYNLALQKQRQTADNRLASITFSQQPQSFLTKQRQA--SRR----NVRPVAPS 684
            +A+YN+ +   ++ A++RLAS   +   QSFL +QRQA  SRR    +V+P   S
Sbjct: 663 VSAWYNMGMTLHKKAAEDRLAS---TGSGQSFLARQRQATSSRRSYPGHVQPATAS 715

May function to promote vesicle trafficking and/or fusion. May participate in defining the architecture and localization of the Golgi complex.

Xenopus laevis (taxid: 8355)

>sp|Q8BUK6|HOOK3_MOUSE Protein Hook homolog 3 OS=Mus musculus GN=Hook3 PE=1 SV=2

 Score =  474 bits (1220), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 304/711 (42%), Positives = 452/711 (63%), Gaps = 42/711 (5%)

Query: 10  ELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNW 69
           ELC  LL W+QTF + AP Q+  D+T+GV M+Q L +I P +F + WL +IKT++G +NW
Sbjct: 11  ELCESLLTWIQTFNVDAPCQTAEDLTNGVVMSQVLQKIDPVYFDDNWLNRIKTEVG-DNW 69

Query: 70  RLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINC 129
           RLKISNLKKI +GI+DY  E   Q + +F   DV+ I E+ DA EL R++QLILGCA+NC
Sbjct: 70  RLKISNLKKILKGILDYNHEILGQQINDFTLPDVNLIGEHSDAAELGRMLQLILGCAVNC 129

Query: 130 NRKQNYITKIMELEESVQQVIMQSIQEL---ENLHGSTHSLNMSLDPQVQNLVAELQTVI 186
            +KQ YI  IM +EESVQ V+M +IQEL   E+   + H   + LD Q++    EL   +
Sbjct: 130 EQKQEYIQAIMMMEESVQHVVMTAIQELMSKESPVSAGHDAYVDLDRQLKKTTEELNEAL 189

Query: 187 DARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERF-QENFVE----PTNKGNSSMRR 241
            A++++AQRC ELDMQV+ LQEEKS L+ E + L ER  Q + +E    P  + +  ++ 
Sbjct: 190 SAKEEIAQRCHELDMQVAALQEEKSSLLAENQILMERLNQSDSIEDPNSPAGRRHLQLQT 249

Query: 242 QMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRET 301
           Q++ L+EE F+ E+A+DDYRI+ E   K++ +L  + + L   A EA+ LKDE+D+LR +
Sbjct: 250 QLEQLQEETFRLEAAKDDYRIRCEELEKEISELRQQNDELTTLADEAQSLKDEIDVLRHS 309

Query: 302 AEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVD 361
           ++KV K EG +E+YKKK E+L DL++QVK LE KN  Y+Q T+ LEEEL+K    + Q++
Sbjct: 310 SDKVSKLEGQVESYKKKLEDLGDLRRQVKLLEEKNTMYMQNTVSLEEELRKANAARGQLE 369

Query: 362 MYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKC 421
            YK+Q+ EL N+ ++E+K+ADK +FE K+L+EKV  LQ+EK++L  ERDSLKET EEL+C
Sbjct: 370 TYKRQVVELQNRLSDESKKADKLDFEYKRLKEKVDGLQKEKDRLRTERDSLKETIEELRC 429

Query: 422 CQLQQSK--SAELNTLG--ENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKL 477
            Q Q+ +  +  L  LG  E+ D     +   E+R+KL+RL HEN ML++NQ+D    K+
Sbjct: 430 VQAQEGQLTTQGLMPLGSQESSDSLAAEIVTPEIREKLIRLQHENKMLKLNQEDSDNEKI 489

Query: 478 NIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKE---------RVTEDAAGMKV--- 525
            ++ + LDD   +      ENR  NQR+LE++++++E            ED+  +K    
Sbjct: 490 ALLQSLLDDANLRKNELETENRLVNQRLLEVQSQVEELQKSLQDQGSKAEDSVLLKKKLE 549

Query: 526 ----KIFELQNEIKNLKEQINHQQEEHLEQGKL-IEKLQDSITQKDSEIQDYEEKNRKYI 580
               K+ E  NE++  K  I    E       L IE+LQ+++ +K+ E++  EE+ +KY+
Sbjct: 550 EHLEKLHEANNELQK-KRAIIEDLEPRFNNSSLRIEELQEALRKKEEEMKQMEERYKKYL 608

Query: 581 EKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQ----EKLIAT 636
           EKA S  + LDP  QN  A  E++ L+ +  ++D++   LEK  EK + Q    EK I +
Sbjct: 609 EKAKSVIRTLDPK-QNQGAAPEIQALKNQLQERDRLFHSLEKEYEKTKSQRDMEEKYIVS 667

Query: 637 AFYNLALQKQRQTADNRLASITFSQQPQSFLTKQRQA-SRRNVRP--VAPS 684
           A+YN+ +   ++ A++RLAS   +   QSFL +QRQA S R   P  V P+
Sbjct: 668 AWYNMGMTLHKKAAEDRLAS---TGSGQSFLARQRQATSTRRSYPGHVQPA 715

Component of the FTS/Hook/FHIP complex (FHF complex). The FHF complex may function to promote vesicle trafficking and/or fusion via the homotypic vesicular protein sorting complex (the HOPS complex). May regulate clearance of endocytosed receptors such as MSR1. Participates in defining the architecture and localization of the Golgi complex (By similarity). Serves as a target for the spiC protein from Salmonella typhimurium, which inactivates it, leading to a strong alteration in cellular trafficking.

Mus musculus (taxid: 10090)

>sp|Q5TZ80|HOOK1_DANRE Protein Hook homolog 1 OS=Danio rerio GN=hook1 PE=2 SV=1

 Score =  443 bits (1139), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 279/711 (39%), Positives = 444/711 (62%), Gaps = 44/711 (6%)

Query: 11  LCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWR 70
           LC  L+ WLQTF   AP +++ D+T G AM+QALHQI P WFSE WLA+IK D+G +N R
Sbjct: 8   LCESLIIWLQTFKTAAPCKTVEDLTSGAAMSQALHQIDPSWFSESWLARIKEDVG-DNVR 66

Query: 71  LKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCN 130
           LK++NLKKI + IVDY+ E   Q + +F   D+ ++VE  D  EL RL+QLILGCA+ C+
Sbjct: 67  LKMNNLKKILQMIVDYYNEVLAQQMSDFPLPDLMRVVEQSDQVELGRLLQLILGCAVKCD 126

Query: 131 RKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDP------QVQNLVAELQT 184
           RKQ YI  IM LEESVQ V+M +IQEL +    +    +  +P      Q++  + +L  
Sbjct: 127 RKQEYIQIIMTLEESVQHVVMTAIQELMSRESVSQ---LGAEPAGDTEQQLKKALEDLTE 183

Query: 185 VIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQ--ENFVEPT---NKGNSSM 239
           V+  ++++AQRC ELDMQV++LQEE++ L+ E   L +R    E F +P+    + +S +
Sbjct: 184 VMAEKEELAQRCQELDMQVTVLQEERNSLLAENDLLTDRSSQLETFDDPSTPSGRKHSQL 243

Query: 240 RRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILR 299
           + Q++ L+EE F+ E+A+DDYRI  E   KQ+ +L+ + + L   A E+R LKDE+DILR
Sbjct: 244 QFQLEQLQEENFRLEAAKDDYRIHCEELEKQLVELQHRNDELTSLAEESRSLKDELDILR 303

Query: 300 ETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQ 359
             +++  K E  +ETY+KK E+L DL++Q+K LE KN++Y+  T+ LEEEL+K    ++Q
Sbjct: 304 SCSDRAVKLEASVETYRKKLEDLSDLRRQMKALEEKNMTYMHNTVSLEEELRKANAARAQ 363

Query: 360 VDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEEL 419
           ++ YK+Q+ EL+ + ++E++RAD   FE KKLQEK  +L +E+E++ +ERD+L+ETNEEL
Sbjct: 364 LETYKRQVQELHKKLSDESRRADNLVFEMKKLQEKYDALVKERERISIERDTLRETNEEL 423

Query: 420 KCCQLQQSK---SAELNTLGENLD-LSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEG 475
           +C Q QQ +   + +  T   + D L+ + +PI E R+K +RL HEN ML++ Q++  + 
Sbjct: 424 RCTQAQQDQLLLAGKYQTGSPSHDNLAAEMLPI-EYREKFIRLQHENKMLRLQQEESEKQ 482

Query: 476 KLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKE-RVTEDAAGMKVKIFELQNEI 534
           ++  +  +L++  +       +NR   +RI EL+ ++++ +      G K     L+ ++
Sbjct: 483 RITELQQQLEEARRGRSQLDTDNRLNRERISELQQQVEDLQKALQTQGAKPDDSHLKRKL 542

Query: 535 KNLKEQINHQQEEHLEQGKLIEKLQDSITQ--------------KDSEIQDYEEKNRKYI 580
                Q+N  Q+E +++ +L+E LQ   TQ              KD +++  E++ + Y+
Sbjct: 543 DAHMVQLNEAQDEIMKKKELLEDLQPDATQTSVKMDELMAALKKKDEDMRAMEDRYKMYL 602

Query: 581 EKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEK---KEQQEKLIATA 637
           EKA    + LDP +   +A  E+++L+ +  DKDK +  LE+  E+   +E +EKLI TA
Sbjct: 603 EKARDVIRALDPKLNPASA--EIQSLKVQLSDKDKKIIALERECEQAKLREYEEKLIVTA 660

Query: 638 FYNLALQKQRQTADNRLASITFSQQP--QSFLTKQRQAS--RRNVRPVAPS 684
           +YN +L  Q+   ++RL+    S  P  QSFL +QRQ +  RR +    P+
Sbjct: 661 WYNKSLNFQKMAIESRLSGRANSLVPPGQSFLAQQRQVTNARRTMSINVPA 711

May function to promote vesicle trafficking and/or fusion.

Danio rerio (taxid: 7955)

>sp|Q5ZJ27|HOOK1_CHICK Protein Hook homolog 1 OS=Gallus gallus GN=HOOK1 PE=2 SV=1

 Score =  416 bits (1070), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 266/710 (37%), Positives = 428/710 (60%), Gaps = 41/710 (5%)

Query: 11  LCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWR 70
           LC+ L+ WLQTF   AP +++ D+T+GVAMAQ LHQI   WF   WL +IK D+G +NWR
Sbjct: 10  LCDSLILWLQTFNTAAPCRNVQDLTNGVAMAQVLHQIDVAWFDASWLNRIKEDVG-DNWR 68

Query: 71  LKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCN 130
           +K SNLKKI +GI+DY+ E+ DQ + E    D++KI EN D  EL RLMQLILGCA+NC 
Sbjct: 69  IKSSNLKKILQGIMDYYHEFLDQQISEELIPDLNKISENSDPTELGRLMQLILGCAVNCE 128

Query: 131 RKQNYITKIMELEESVQQVIMQSIQEL---ENLHGSTHSLNMSLDPQVQNLVAELQTVID 187
           RKQ +I  IM LEESVQ V+M +IQEL   E +  S   ++  ++ Q++  + +LQ  I 
Sbjct: 129 RKQEHIQNIMTLEESVQHVVMTAIQELMSKEAMGPSASDVSSEMEQQLKKALEDLQEAIA 188

Query: 188 ARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALK 247
            ++++AQRC ELD+QV+ LQ+EK+ LV E   L +R  E   +  +  N+ + ++    +
Sbjct: 189 EKEELAQRCQELDLQVAALQDEKNSLVSENEILNDRL-EQLDDSLDDPNTVVAKKYFHAQ 247

Query: 248 EEL-------FKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRE 300
            +L       F+ E+A+DDYR+  E   KQ+ +L+ + N L   A E+R LKDE DILR 
Sbjct: 248 LQLEQLQEENFRLEAAKDDYRVHCEDLEKQLIELQHRNNELTSLAEESRALKDENDILRA 307

Query: 301 TAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQV 360
            A+K  K E  +E Y+KK ++L D ++QVK L+  N+ Y+  T+ LE+EL++    ++Q+
Sbjct: 308 AADKASKLESTVEVYRKKLQDLNDFRRQVKSLQETNMMYMHNTVSLEDELREANAARAQL 367

Query: 361 DMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420
           + YK+Q+ EL+N+ +EE+KRADK  FE K+L+EK  +L +EKE+L+++ D+LKETNEEL+
Sbjct: 368 ETYKRQVQELHNKLSEESKRADKLAFEMKRLEEKHEALVKEKERLVIQCDALKETNEELR 427

Query: 421 CCQLQQS--KSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLN 478
             Q+QQ      + + +  + +L+ + +P+ E R+  ++L HEN ML + Q+     ++ 
Sbjct: 428 YSQMQQDHLSRTDASRIKSHDNLAAELLPV-EYREMFIQLQHENKMLLLQQEGSENERIM 486

Query: 479 IVNAKLDDVTQQVKMKTLENRKANQRILELEAELKE---------RVTEDAAGMKVKIF- 528
            +  +L+     V     E R   +RI EL+ ++++           TE ++ +K K+  
Sbjct: 487 ELQKQLEQKQWTVNELGTEKRLNKERIGELQQQIEDLQKTLQEQGSKTEGSSNLKQKLAA 546

Query: 529 ------ELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEK 582
                 E+ +E++  +  +   Q +  +  + I +L+ ++ +KD +++  EE+ + Y+EK
Sbjct: 547 HMEKLSEVHDELQKKEAALAELQPDVSQNPQKIGELEAALRKKDEDMKAMEERYKMYLEK 606

Query: 583 ANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLE---KTLEKKEQQEKLIATAFY 639
           A +  K LDP +   +A  E+  LRK+  ++DK ++ LE   K  + ++ +E LI TA+Y
Sbjct: 607 ARNVIKTLDPKLNPASA--EIMLLRKQITERDKKIEALEAEYKLAKLRDYEENLIVTAWY 664

Query: 640 NLALQKQRQTADNRL---ASITFSQQPQSFLTKQRQA--SRRNVRPVAPS 684
           N +L  Q+   + RL            +SFL +QR    +RRN+    PS
Sbjct: 665 NKSLTLQKLGMEARLLGSGGACRDGPGRSFLAQQRHVTNTRRNLPVKVPS 714

May function to promote vesicle trafficking and/or fusion.

Gallus gallus (taxid: 9031)

>sp|Q8BIL5|HOOK1_MOUSE Protein Hook homolog 1 OS=Mus musculus GN=Hook1 PE=1 SV=2

 Score =  404 bits (1037), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 277/737 (37%), Positives = 433/737 (58%), Gaps = 89/737 (12%)

Query: 11  LCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWR 70
           LC+ L+ WLQTF   +P Q +  +T+GV MAQ LHQI   WFSE WL++IK D+G +NWR
Sbjct: 14  LCDSLIIWLQTFKTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVG-DNWR 72

Query: 71  LKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCN 130
           +K SNLKK+  GI  Y+ E+  Q + E    D+++I E  D  EL RL+QLILGCA+NC 
Sbjct: 73  IKASNLKKVLHGITSYYHEFLGQQISEELIPDLNQITECADPVELGRLLQLILGCAVNCE 132

Query: 131 RKQNYITKIMELEESVQQVIMQSIQEL---ENLHGSTHSLNMSLDPQVQNLVAELQTVID 187
           +KQ +I  IM LEESVQ V+M +IQEL   E +          L+ Q++  + ELQ  I 
Sbjct: 133 KKQEHIKNIMTLEESVQHVVMTAIQELMSKEIVISPASDTVGELEQQLKRALEELQEAIA 192

Query: 188 ARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQE---NFVEPTN---KGNSSMRR 241
            ++++ QRC ELDMQV+ LQ+EK+ LV E   + E+  +   +F +P     K    ++ 
Sbjct: 193 EKEELKQRCQELDMQVTTLQDEKNSLVSENEMMNEKLDQLDGSFDDPNTMVAKKYFHVQL 252

Query: 242 QMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRET 301
           Q++ L+EE ++ E+A+DDYR+  E   KQ+ + + + + L   A E R LKDE+D+LR T
Sbjct: 253 QLEQLQEENYRLEAAKDDYRVHCEELEKQLIEFQHRNDELTSLAEETRALKDEIDVLRAT 312

Query: 302 AEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVD 361
           ++K  K E  +E Y++K ++L DL+KQVK L+  N+ Y+  T+ LEEELKK    ++Q++
Sbjct: 313 SDKANKLESTVEVYRQKLQDLNDLRKQVKSLQETNMMYMHNTVSLEEELKKANAARAQLE 372

Query: 362 MYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKC 421
            YK+Q+ +L+ + + E+KRAD   FE K+L+EK  +L +EKE+LI +RD+LKETNEEL+C
Sbjct: 373 TYKRQVQDLHTKLSSESKRADTLAFEMKRLEEKHETLLKEKERLIEQRDTLKETNEELRC 432

Query: 422 CQLQQSK--SAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNI 479
            + QQ     A+ +      +L+ + +P+ E R+  +RL HEN ML++ Q    EG    
Sbjct: 433 SKAQQDHLNQADASATKSYENLAAEIMPV-EYREVFIRLQHENKMLRLQQ----EG---T 484

Query: 480 VNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKE 539
            N +++ + +Q++ K   +RK N    ELE E  +R++      K +I ELQ +I++L++
Sbjct: 485 ENERIEQLQEQLEQK---HRKMN----ELETE--QRLS------KERIGELQQQIEDLQK 529

Query: 540 QINHQQ---------------EEHLE-----------QGKLIEKLQDSITQ--------- 564
            +  Q                E H+E           + +LIE LQ  I+Q         
Sbjct: 530 SLQEQGSKSEGESSSKLKQKLEAHMEKLTEVHEELQKKQELIEDLQPDISQNAQKISELE 589

Query: 565 -----KDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDD 619
                KD +++  EE+ + Y+EKA +  K LDP +   +A  E+  LRK+  +K++ ++ 
Sbjct: 590 AALQKKDEDMKAMEERYKMYLEKARNVIKTLDPKLNPASA--EIMLLRKQLAEKERRIEI 647

Query: 620 LE---KTLEKKEQQEKLIATAFYNLALQKQRQTADNRLASI------TFSQQP-QSFLTK 669
           LE   K  + ++ +EKLI +A+YN +L  Q+   ++RL S       + +  P +SFL +
Sbjct: 648 LESECKVAKLRDYEEKLIVSAWYNKSLAFQKLGMESRLVSGASACKDSVAAAPARSFLAQ 707

Query: 670 QRQA--SRRNVRPVAPS 684
           QR    +RRN+    P+
Sbjct: 708 QRHITNTRRNLSVKVPA 724

Component of the FTS/Hook/FHIP complex (FHF complex). The FHF complex may function to promote vesicle trafficking and/or fusion via the homotypic vesicular protein sorting complex (the HOPS complex) (By similarity). Required for spermatid differentiation. Probably involved in the positioning of the microtubules of the manchette and the flagellum in relation to the membrane skeleton.

Mus musculus (taxid: 10090)

>sp|Q9UJC3|HOOK1_HUMAN Protein Hook homolog 1 OS=Homo sapiens GN=HOOK1 PE=1 SV=2

 Score =  403 bits (1036), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 281/738 (38%), Positives = 434/738 (58%), Gaps = 93/738 (12%)

Query: 12  CNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRL 71
           C+ L+ WLQTF   +P Q +  +T GVAMAQ LHQI   WF+E WL++IK D+G +NWR+
Sbjct: 15  CDSLMIWLQTFNTASPCQDVKQLTSGVAMAQVLHQIDAAWFNESWLSRIKEDVG-DNWRI 73

Query: 72  KISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCNR 131
           K SN+KK+ +GI+ Y+ E+  Q + E    D+++I E  D  EL RL+QLILGCAINC +
Sbjct: 74  KASNVKKVLQGIMSYYHEFLGQQISEALIPDLNQITECSDPVELGRLLQLILGCAINCEK 133

Query: 132 KQNYITKIMELEESVQQVIMQSIQEL---ENLHGSTHSLNMSLDPQVQNLVAELQTVIDA 188
           KQ +I  IM LEESVQ V+M +IQEL   E L    +     L+ Q++  + ELQ  +  
Sbjct: 134 KQEHIQNIMTLEESVQHVVMTAIQELMSKEILSSPPNDAVGELEQQLKRALEELQEALAE 193

Query: 189 RDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQE---NFVEPTN---KGNSSMRRQ 242
           ++++ QRC ELDMQV+ LQ+EK+ LV E   + E+  +   +F +P     K     + Q
Sbjct: 194 KEELRQRCEELDMQVTTLQDEKNSLVSENEMMNEKLDQLDGSFDDPNTVVAKKYFHAQLQ 253

Query: 243 MDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETA 302
           ++ L+EE F+ E+A+DDYR+  E   KQ+ + + + + L   A E R LKDE+D+LR T+
Sbjct: 254 LEQLQEENFRLEAAKDDYRVHCEELEKQLIEFQHRNDELTSLAEETRALKDEIDVLRATS 313

Query: 303 EKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDM 362
           +K  K E  +E Y++K ++L DL+KQVK L+  N+ Y+  T+ LEEELKK    ++Q++ 
Sbjct: 314 DKANKLESTVEIYRQKLQDLNDLRKQVKTLQETNMMYMHNTVSLEEELKKANAARTQLET 373

Query: 363 YKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCC 422
           YK+Q+ +L+ + + E+KRAD   FE K+L+EK  +L +EKE+LI +RD+LKETNEEL+C 
Sbjct: 374 YKRQVQDLHVKLSSESKRADTLAFEMKRLEEKHEALLKEKERLIEQRDTLKETNEELRCS 433

Query: 423 QLQQSK----SAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLN 478
           Q+QQ       A      EN  L+ + +P+ E R+  +RL HEN ML++ Q    EG   
Sbjct: 434 QVQQDHLNQTDASATKSYEN--LAAEIMPV-EYREVFIRLQHENKMLRLQQ----EGS-- 484

Query: 479 IVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLK 538
             N +++++ +Q++ K   +RK N    ELE E  +R++      K +I ELQ +I++L+
Sbjct: 485 -ENERIEELQEQLEQK---HRKMN----ELETE--QRLS------KERIRELQQQIEDLQ 528

Query: 539 EQINHQQ---------------EEHLE-----------QGKLIEKLQDSITQ-------- 564
           + +  Q                E H+E           + +LIE LQ  I Q        
Sbjct: 529 KSLQEQGSKSEGESSSKLKQKLEAHMEKLTEVHEELQKKQELIEDLQPDINQNVQKINEL 588

Query: 565 ------KDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLD 618
                 KD +++  EE+ + Y+EKA +  K LDP +   +A  E+  LRK+  +K++ ++
Sbjct: 589 EAALQKKDEDMKAMEERYKMYLEKARNVIKTLDPKLNPASA--EIMLLRKQLAEKERRIE 646

Query: 619 DLE---KTLEKKEQQEKLIATAFYNLALQKQRQTADNRLASI------TFSQQP-QSFLT 668
            LE   K  + ++ +EKLI +A+YN +L  Q+   ++RL S       T +  P +SFL 
Sbjct: 647 ILESECKVAKFRDYEEKLIVSAWYNKSLAFQKLGMESRLVSGGGACSDTGACTPARSFLA 706

Query: 669 KQRQA--SRRNVRPVAPS 684
           +QR    +RRN+    P+
Sbjct: 707 QQRHITNTRRNLSVKVPA 724

Required for spermatid differentiation. Probably involved in the positioning of the microtubules of the manchette and the flagellum in relation to the membrane skeleton (By similarity). Component of the FTS/Hook/FHIP complex (FHF complex). The FHF complex may function to promote vesicle trafficking and/or fusion via the homotypic vesicular protein sorting complex (the HOPS complex).

Homo sapiens (taxid: 9606)

>sp|Q17AF4|HOOK_AEDAE Protein hook OS=Aedes aegypti GN=hk PE=3 SV=1

 Score =  393 bits (1009), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 268/701 (38%), Positives = 407/701 (58%), Gaps = 60/701 (8%)

Query: 7   DQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGA 66
           D+ E+   L++WL    L APH+++  ++DGVA+AQAL+ IAPE FSE WLAKIK D+G 
Sbjct: 4   DKMEIYESLIRWLGVLQLSAPHENIQQLSDGVALAQALNLIAPEMFSEGWLAKIKVDVG- 62

Query: 67  NNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCA 126
           +NWRLK+SNLKKI EG+  Y+Q+     L E  + D  KI E  D  EL RL+QLILGCA
Sbjct: 63  HNWRLKVSNLKKIIEGVYVYYQDILSLNLSEKLRPDAMKIAEKCDGYELGRLLQLILGCA 122

Query: 127 INCNRKQNYITKIMELEESVQQVIMQSIQELE----NLHGSTHSLN-MSLDPQVQNLVAE 181
           +NC  KQ YIT+IMELEES+Q+ IM ++Q++E     +  S +S+N  SLD         
Sbjct: 123 VNCLEKQKYITQIMELEESLQRNIMAALQDIEYVWQGVSPSRNSINATSLD--------- 173

Query: 182 LQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEE---RFQ-ENFVE------- 230
           ++T+ + RD +AQ+C E + ++ +L EEKS L +E  +L+    R++  N +        
Sbjct: 174 VKTLQEDRDSLAQKCHETNKKMLILIEEKSVLQQEITKLQALIARYENPNLIGDDGTSLG 233

Query: 231 PTNKGNS---SMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGE 287
           P   G++    +R+ +D+LK+EL +AE+ARDD ++K  +Q K++ DL++K++ L     E
Sbjct: 234 PVQLGSTRYNDLRKVVDSLKDELLQAETARDDLKMKSAMQEKEIADLQVKIDELHTATAE 293

Query: 288 ARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLE 347
              LKDE+DIL+E  +K++  E  + TYKKK E+  DLKKQ+K LE  +  Y++Q L  E
Sbjct: 294 IAQLKDEIDILKEANDKLKMCETQLLTYKKKLEDYNDLKKQIKMLEECSAEYLKQNLQHE 353

Query: 348 EELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIV 407
           EE KK    K QV++YKK++ +L+ + + E  +  K+EFE  +LQ K++++QREKE L+ 
Sbjct: 354 EEAKKYSGLKGQVELYKKEIQDLHAKLDSEMSKTVKTEFEYNQLQAKLSAVQREKENLLS 413

Query: 408 ERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQM 467
           ERD L+ET +ELKC Q  +  S   NT+ + L  S       ++R ++ RL  EN +L+ 
Sbjct: 414 ERDVLRETCDELKCGQAAED-SESGNTMSKELHSS-------DVRDRIERLERENKVLRE 465

Query: 468 NQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKI 527
            Q     G    ++  LDD  Q+ +    + + ANQR+L L     E ++   + M +++
Sbjct: 466 GQ-----GGQTALSQLLDDANQRNEKLRDQLKAANQRVLLLSQHHNEDIS-SKSDMDIQL 519

Query: 528 ---FELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKAN 584
               EL NE ++   QI+  Q +  +    I  L+ ++  KD E+   + + +K +EKA 
Sbjct: 520 KQALEL-NEQRS--SQIDEAQSQMTQLHTKIANLEAALAAKDQELLAADSRYKKCVEKAK 576

Query: 585 SAFKLLDPTVQNVAALNELKN---------LRKKNDDKDKMLDDLEKTLEKKEQQEKLIA 635
              K LDP   N A L E  +               D   +       +    Q+E+LIA
Sbjct: 577 EVIKTLDPRAINEALLLEKPSQDGEASSSSATGSGGDASTLTSTGSGRVPMGVQEEQLIA 636

Query: 636 TAFYNLALQKQRQTADNRLASITFSQQPQSFLTKQRQASRR 676
           TAFY L +  QR+  D+RLA    S   QSFL++QRQ + R
Sbjct: 637 TAFYRLGMTCQREAVDSRLA--LLSGPGQSFLSRQRQPAPR 675

Involved in endocytic trafficking. Probably acts as a cytoskeletal linker protein that tethers endosome vesicles to the cytoskeleton.

Aedes aegypti (taxid: 7159)

>sp|B0WPU9|HOOK_CULQU Protein hook OS=Culex quinquefasciatus GN=hk PE=3 SV=2

 Score =  385 bits (990), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 262/698 (37%), Positives = 409/698 (58%), Gaps = 56/698 (8%)

Query: 10  ELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNW 69
           E+   L++WL+   L APH +  D++DGVA+AQAL+QIAPE FS+ WL+KIK+D+G +NW
Sbjct: 9   EIYESLIRWLRVLQLSAPHDNEKDLSDGVALAQALNQIAPEMFSDSWLSKIKSDVG-HNW 67

Query: 70  RLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINC 129
           RLK+SNLKKI EG+  Y+Q+     L E  + D  KI E  D  EL RL+QLILGCA+NC
Sbjct: 68  RLKVSNLKKIIEGVYVYYQDILSLNLAEELRPDAMKIAEKCDGFELGRLLQLILGCAVNC 127

Query: 130 NRKQNYITKIMELEESVQQVIMQSIQELENL-HGSTHSLNMSLDPQVQNLVAELQTVIDA 188
             KQ YIT+IMELEES+Q+ IM ++Q++E +  G++ S N    P +     +++T+ + 
Sbjct: 128 LEKQKYITQIMELEESLQRNIMAALQDIEYVWQGASPSRNSINAPSL-----DVKTLQED 182

Query: 189 RDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLE---ERFQE-NFVE-------PTNKGNS 237
           RD +AQ+C E + ++ +L EEKS L +E  +L+   ER++  N +        P   G+S
Sbjct: 183 RDSLAQKCHETNKKMLILIEEKSVLQQEISKLQVIIERYEHPNLIGDDGTSLGPIQLGSS 242

Query: 238 ---SMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDE 294
               +R+ +D LK+EL +AE+ARDD ++K  +Q K++ DL++K++ L     E   LKDE
Sbjct: 243 RYNDLRKVVDGLKDELLQAETARDDLKMKSAMQEKEISDLQVKIDELHSATAEIAQLKDE 302

Query: 295 VDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNG 354
           +DIL+E  +K++  E  ++TYKKK E+  DLKKQ+K LE ++  Y++Q  D EEE KK  
Sbjct: 303 IDILKEANDKLKICETQLQTYKKKLEDYNDLKKQIKMLEERSAEYLKQNSDFEEEAKKYA 362

Query: 355 NWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKE 414
             K QV++YKK++ +L+ + + E  +  K+EFE+ +LQ K++++QREKE L+ ERD+L+E
Sbjct: 363 GLKGQVELYKKEIQDLHAKLDSEMGKTMKTEFEHNQLQAKLSAVQREKENLLSERDALRE 422

Query: 415 TNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIE 474
             +ELKC Q  +   +  NT+ + L          ++R+++ RL  EN  L+  Q     
Sbjct: 423 ACDELKCGQAAEDSESGRNTMSKELH-------SNDVRERIERLERENKALREGQ----- 470

Query: 475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEI 534
           G    ++  LDD  Q+      + + ANQRI+ L     + ++   + M +++     + 
Sbjct: 471 GGQTALSQLLDDANQRNDKLRDQLKSANQRIMLLSQNHSDEISS-KSDMDIQL----KQA 525

Query: 535 KNLKEQINHQQEEHLEQ-GKL---IEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLL 590
             L EQ + Q +E   Q G+L   I  L+ ++  K+ ++   + + +K +EKA    K L
Sbjct: 526 LELNEQRSSQIDEAQSQMGQLQAKIANLESALVAKEQDLLAADTRYKKCVEKAKEVIKTL 585

Query: 591 DPTVQNVAAL---------NELKNLRKKNDDKDKMLDDLEKTLEKKE---QQEKLIATAF 638
           DP   N A L         +E  +     D           +  +     Q+E+LIATAF
Sbjct: 586 DPRAVNEALLLEKPPQQDGSEGSSTTGGGDASTLTAASASSSSARAPMGVQEEQLIATAF 645

Query: 639 YNLALQKQRQTADNRLASITFSQQPQSFLTKQRQASRR 676
           Y L +  QR+  D+RLA    S   QSFL++QRQ + R
Sbjct: 646 YRLGMTCQREAVDSRLA--LLSGPGQSFLSRQRQPAPR 681

Involved in endocytic trafficking. Probably acts as a cytoskeletal linker protein that tethers endosome vesicles to the cytoskeleton.

Culex quinquefasciatus (taxid: 7176)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	684
328699039	699	PREDICTED: protein Hook homolog 3-like [	0.964	0.944	0.512	1e-173
242012695	689	conserved hypothetical protein [Pediculu	0.963	0.956	0.480	1e-158
340709146	703	PREDICTED: protein Hook homolog [Bombus	0.967	0.941	0.470	1e-155
350413086	703	PREDICTED: protein Hook homolog [Bombus	0.967	0.941	0.472	1e-155
307166540	704	Protein Hook-like protein 3 [Camponotus	0.976	0.948	0.455	1e-152
66500873	701	PREDICTED: protein Hook homolog 3-like i	0.961	0.938	0.456	1e-149
383862401	703	PREDICTED: protein Hook homolog [Megachi	0.969	0.943	0.456	1e-146
345480895	707	PREDICTED: protein Hook homolog 3-like [	0.953	0.922	0.443	1e-145
322792305	693	hypothetical protein SINV_04350 [Solenop	0.959	0.946	0.447	1e-142
307214676	705	Protein Hook-like protein 3 [Harpegnatho	0.959	0.930	0.446	1e-142

>gi|328699039|ref|XP_001943846.2| PREDICTED: protein Hook homolog 3-like [Acyrthosiphon pisum]

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 351/685 (51%), Positives = 488/685 (71%), Gaps = 25/685 (3%)

Query: 10  ELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNW 69
           +LCN+LLKWLQT  L  PH++L DITDGVA+A+AL+QI+PE F + W +KIK D+G NNW
Sbjct: 12  DLCNVLLKWLQTLHLKTPHRTLYDITDGVALAEALNQISPECFDDNWFSKIKKDVG-NNW 70

Query: 70  RLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINC 129
           RLK+SNLKKI E I D++Q+   Q +G F K DV KI +  D  ELARL+QLILGCA+NC
Sbjct: 71  RLKVSNLKKIVEKIQDFYQDCDTQHMGNFVKPDVIKIGDQDDTMELARLLQLILGCAVNC 130

Query: 130 NRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSL---NMSLDP----QVQNLVAEL 182
              Q+YIT I  ++E+ Q VIMQSIQ+LE + G   S+   ++ +D     Q+Q L+ EL
Sbjct: 131 RNAQDYITNIRSMDENSQTVIMQSIQDLERIQGHPQSIIATSLGVDTDHQEQIQQLIDEL 190

Query: 183 QTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQ 242
           Q+V  ARDQM QRC+ELD Q+S+LQEEK+ +++EKR LEER  E+  +P  KG S  RRQ
Sbjct: 191 QSVTKARDQMTQRCLELDSQISLLQEEKTYILDEKRHLEERLLESVEDPL-KG-SGQRRQ 248

Query: 243 MDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETA 302
           ++ LKEEL+KAE++RDDYRIKL+ Q + M +L+ K + L+ETAGEAR LKDE+DILR+TA
Sbjct: 249 IEELKEELYKAETSRDDYRIKLKTQERDMAELKTKFDLLQETAGEARLLKDELDILRDTA 308

Query: 303 EKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDM 362
           ++VEKYE  I++YKKK EEL DLK+QVK LESKN++YIQQ ++LE+E+KK+  WKSQ+D+
Sbjct: 309 DRVEKYESTIQSYKKKLEELGDLKRQVKILESKNIAYIQQNMELEQEIKKSSVWKSQLDI 368

Query: 363 YKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCC 422
           YKKQ++EL++  N+ET + DK EFE+KKL E + +LQ+EK++L++ERDSLKE NEELKCC
Sbjct: 369 YKKQVTELHHTLNDETNKIDKLEFESKKLLENLNTLQKEKDRLVIERDSLKEANEELKCC 428

Query: 423 QLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNA 482
           Q Q  K++ L         S+D     +L+QKLVRL HEN ML+MNQK+  E K++++ +
Sbjct: 429 QTQMKKTSTLE--HSQTTTSDDMESAMDLKQKLVRLQHENTMLKMNQKEPEEDKISVLQS 486

Query: 483 KLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQIN 542
            LD+  QQ     L+NRKANQ+ILELE+ELKE+ TE+      KI ELQ++++  K+  +
Sbjct: 487 ILDNTRQQYNELRLDNRKANQKILELESELKEQ-TENTNEWDSKIKELQSQLQCEKDTRS 545

Query: 543 HQQEEH----LEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVA 598
              EE      ++ + I  LQ+S+ QKD EIQ++EEK++K+IEKA S  K +D   +NV+
Sbjct: 546 LDIEEKNTTISDKDQFINILQNSLHQKDMEIQEWEEKHKKFIEKAKSVVKSMDA--KNVS 603

Query: 599 ALN-ELKNLRKKNDDKDKMLDDLEKTLEKK----EQQEKLIATAFYNLALQKQRQTADNR 653
             + ++  L  +    +K + DL+K  E      E +EKLI+TAFY LA  K +++ D R
Sbjct: 604 LSDVDISVLENRLLKANKEISDLKKEQENYKTSLEIEEKLISTAFYKLAQTKMQESVDQR 663

Query: 654 LASITFSQQPQSFLTKQRQASRRNV 678
           + +     Q Q+FL+K RQ + + V
Sbjct: 664 VMNQGLL-QTQTFLSKHRQQTNKTV 687

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012695|ref|XP_002427063.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212511321|gb|EEB14325.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  566 bits (1460), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 339/705 (48%), Positives = 465/705 (65%), Gaps = 46/705 (6%)

Query: 1   MNNTQEDQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKI 60
           M+ TQ+    LC  L+KWLQTF L APH++  DI+DGVAMAQAL QIAPEWFS+ + +KI
Sbjct: 1   MDKTQD----LCGSLIKWLQTFELEAPHRTAEDISDGVAMAQALAQIAPEWFSDAFTSKI 56

Query: 61  KTDIGANNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQ 120
           K D+  +NWRLK SNLKKI E IVDY+QE  +Q L +F K D+++I E  + +EL RL+Q
Sbjct: 57  KADV-ISNWRLKASNLKKIVEAIVDYYQECLNQQLLDFKKPDINQIAEKCNREELGRLLQ 115

Query: 121 LILGCAINCNRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVA 180
           LILGCA+NC+ KQ+YIT IM +EESVQQVIMQSIQELEN  G   S   S D Q+Q L+ 
Sbjct: 116 LILGCAVNCSHKQDYITIIMGMEESVQQVIMQSIQELEN-GGVAVS---SEDAQIQRLMI 171

Query: 181 ELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKG----- 235
           ++   ++ R+QM QRC ELDMQVS LQEEK+ +++E ++L+ER QE    P N       
Sbjct: 172 DINKAVEERNQMKQRCHELDMQVSFLQEEKANILQENKKLQERLQE-VDNPLNSSLVAGS 230

Query: 236 -NSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDE 294
             +++++  DALKEE+F+ E++RDD R+++E Q   + +L+ K+  L+  A EAR+LKDE
Sbjct: 231 KYNTLKKDFDALKEEIFRVETSRDDLRLRVEAQECDLVELQNKVEELQVHADEARHLKDE 290

Query: 295 VDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNG 354
           +DILRETA+KV KYE  IE+YK+K EEL DLK+QVK LE KN SY+Q  L+LEEE+KKNG
Sbjct: 291 IDILRETADKVGKYESTIESYKRKLEELSDLKRQVKILEEKNTSYMQHNLELEEEVKKNG 350

Query: 355 NWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKE 414
            WK QV+MYKKQ++EL+ + +EETKRADK EFE KK QEK+ +L REKE LIVERD LKE
Sbjct: 351 TWKPQVEMYKKQVAELHQKLSEETKRADKFEFEVKKGQEKILALTREKEHLIVERDCLKE 410

Query: 415 TNEELKCCQLQQSKSAELNTLGENLDLSEDSV----PITELRQKLVRLTHENNMLQMNQK 470
           TNEELKC QL    +    ++  +    E  +    P  E+++KL RL  EN ML++ Q+
Sbjct: 411 TNEELKCTQLSTMPAGGALSVHSDPRYGETGIEEMLP-PEIKEKLARLMMENKMLKLKQE 469

Query: 471 DDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFEL 530
                +L IV A L+D  QQV+  T ENR ANQRIL+LE++++E   E  A        L
Sbjct: 470 GSGNEQLPIVQALLEDAKQQVQTLTSENRLANQRILKLESQIEELQAERPADANSDTLSL 529

Query: 531 QNEIKNLKEQINHQQEEHLEQGKLIEK--------------LQDSITQKDSEIQDYEEKN 576
           + E+  L+    +   EH  Q + IE+              L+D++++K++EIQ  EE+ 
Sbjct: 530 RKELMALQAFSRNLTLEHENQKQKIEQQEESIEEASRKNVHLKDTLSRKEAEIQSLEERY 589

Query: 577 RKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQ---QEKL 633
           +K +EKA +     DP  QN+    EL  L+ +  +K+ ++  LEK  E  +    + K 
Sbjct: 590 KKCVEKAKTVVASFDPK-QNL----ELTALKNQLIEKNNLIQRLEKIEEINKNFNTEHKF 644

Query: 634 IATAFYNLALQKQRQTADNRLASITFSQQPQSFLTKQRQASRRNV 678
           + T FY +A QKQR++ D RLA ++     QSF+ +QRQ   R +
Sbjct: 645 LITNFYRMASQKQRESVDQRLAGLSSG---QSFMVRQRQPINRRL 686

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709146|ref|XP_003393174.1| PREDICTED: protein Hook homolog [Bombus terrestris]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 329/699 (47%), Positives = 477/699 (68%), Gaps = 37/699 (5%)

Query: 13  NILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLK 72
           N L+KWL TF L APH +  DI+DGVA+A  L QIAPEWF+  W AKIKTD+ ++NWRLK
Sbjct: 7   NNLIKWLDTFDLQAPHSTAEDISDGVALADVLAQIAPEWFTAAWRAKIKTDV-SSNWRLK 65

Query: 73  ISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCNRK 132
           +SNLKKI E I++Y+ E  +Q L  + K D  KI E+ D  EL RL+QLILGCA+NCN+K
Sbjct: 66  VSNLKKIVEAIMEYYIECLNQQLSGYIKPDATKIGEHCDNYELHRLLQLILGCAVNCNQK 125

Query: 133 QNYITKIMELEESVQQVIMQSIQELE-NLHGSTHSLNMSL--------DPQVQNLVAELQ 183
           Q YIT+IM +EE+VQQ IMQSIQELE N+HG   SL  SL        D   Q L+AELQ
Sbjct: 126 QQYITRIMGMEETVQQAIMQSIQELESNMHGPRLSLGTSLNFESLDVADGTQQRLLAELQ 185

Query: 184 TVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGN----SSM 239
             +D ++Q+AQ+C ELD Q+S+LQEEK+ LV E ++L+ER  E F  P   G+    S +
Sbjct: 186 VTVDMKEQLAQKCHELDQQLSLLQEEKAALVTENKKLQERLDE-FENPEESGSILRYSGL 244

Query: 240 RRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILR 299
           R+Q++ALK+ELFK E++RDDYR+K+E+  K++ +L+ +   L++ A EA +LKDE+D LR
Sbjct: 245 RKQVEALKDELFKVETSRDDYRLKVELLEKEVLELQSRQEDLQKAADEANHLKDEIDALR 304

Query: 300 ETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQ 359
           ETA+KV KYE  IE+YKKK E+L DLK+QVK LE KNL Y+Q  +D EEE K+    ++ 
Sbjct: 305 ETADKVAKYEQTIESYKKKMEDLSDLKRQVKMLEDKNLEYLQSKIDYEEESKRTTMLRNH 364

Query: 360 VDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEEL 419
           +++ K+Q++E +++ +E+T + DK EFE KK++ K+++LQRE+++LIVERD+LKETNEEL
Sbjct: 365 LELCKQQLAEAHHKLDEQTNKCDKLEFEGKKMEAKLSTLQRERDRLIVERDALKETNEEL 424

Query: 420 KCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNI 479
           KC QLQ +++    T    +  +E  +P+ E+++KLV L  EN ML++ QK + E KL  
Sbjct: 425 KCTQLQAAENITKPTTDSTVANTE-MIPL-EIKEKLVCLQLENKMLKLKQKGN-EDKLPT 481

Query: 480 VNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAG-------MKVKIFELQN 532
           V A L+D  +++ +   +NRKANQRI+ELE  L+E +   ++G       +  KI +LQ+
Sbjct: 482 VQALLEDSEERLNILRGKNRKANQRIIELENRLEEALGSQSSGDNKTDINLGQKITQLQD 541

Query: 533 EIKNL---KEQINHQQEEH----LEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANS 585
           E+  +   KE++  Q EE       Q +    LQ+ +T+++ E    EE+ +KY+EKA S
Sbjct: 542 ELGKIQAEKERLILQVEERENALQAQKQKAFALQEKLTRREYENAALEERYKKYVEKAKS 601

Query: 586 AFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEK----KEQQEKLIATAFYNL 641
             K LDP  QN ++ NE+  LR +  ++ K+++D+E++L++    KE +EKL+ +AFY L
Sbjct: 602 VIKSLDPK-QNNSSPNEVAVLRNQILEQRKIMEDMERSLKESKLIKEMEEKLMISAFYRL 660

Query: 642 ALQKQRQTADNRLASITFSQQPQSFLTKQRQASRRNVRP 680
            L   R+  D+RLA+++ + Q QSFL +QRQ S R   P
Sbjct: 661 GLSCHREAIDHRLAALSSASQGQSFLARQRQPSARRHPP 699

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413086|ref|XP_003489874.1| PREDICTED: protein Hook homolog [Bombus impatiens]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 330/699 (47%), Positives = 476/699 (68%), Gaps = 37/699 (5%)

Query: 13  NILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLK 72
           N L+KWL TF L APH +  DI+DGVA+A  L QIAPEWF+  W AKIKTD+ ++NWRLK
Sbjct: 7   NNLIKWLDTFDLQAPHSTAEDISDGVALADVLAQIAPEWFTAAWRAKIKTDV-SSNWRLK 65

Query: 73  ISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCNRK 132
           +SNLKKI E I++Y+ E  +Q L  + K D  KI E+ D  EL RL+QLILGCA+NCN+K
Sbjct: 66  VSNLKKIVEAIMEYYIECLNQQLSGYIKPDATKIGEHCDNYELHRLLQLILGCAVNCNQK 125

Query: 133 QNYITKIMELEESVQQVIMQSIQELE-NLHGSTHSLNMSL--------DPQVQNLVAELQ 183
           Q YIT+IM +EE+VQQ IMQSIQELE N+HG   SL  SL        D   Q L+AELQ
Sbjct: 126 QQYITRIMGMEETVQQAIMQSIQELESNMHGPRLSLGTSLNFESLDVADGTQQRLLAELQ 185

Query: 184 TVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGN----SSM 239
             +D ++Q+AQ+C ELD Q+S+LQEEK+ LV E ++L+ER  E F  P   G+    S +
Sbjct: 186 VTVDMKEQLAQKCHELDQQLSLLQEEKAALVTENKKLQERLDE-FENPEESGSILRYSGL 244

Query: 240 RRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILR 299
           R+Q++ALK+ELFK E++RDDYR+K+E+  K++ +L+ +   L++ A EA +LKDE+D LR
Sbjct: 245 RKQLEALKDELFKVETSRDDYRLKVELLEKEVLELQSRQEDLQKAADEANHLKDEIDALR 304

Query: 300 ETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQ 359
           ETA+KV KYE  IE+YKKK E+L DLK+QVK LE KNL Y+Q  +D EEE K+    ++ 
Sbjct: 305 ETADKVAKYEQTIESYKKKMEDLSDLKRQVKMLEDKNLEYLQSKIDYEEESKRTTMLRNH 364

Query: 360 VDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEEL 419
           +++ K+Q++E +++ +E+T + DK EFE KK++ K+++LQRE+++LIVERD+LKETNEEL
Sbjct: 365 LELCKQQLAEAHHKLDEQTNKCDKLEFEGKKMEAKLSTLQRERDRLIVERDALKETNEEL 424

Query: 420 KCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNI 479
           KC QLQ +++    T    +  +E  +P+ E+++KLV L  EN ML++ QK + E KL  
Sbjct: 425 KCTQLQAAENIAKPTTDSTVANTE-MIPL-EIKEKLVCLQLENKMLKLKQKGN-EDKLPT 481

Query: 480 VNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAG-------MKVKIFELQN 532
           V A L+D  +++ +   +NRKANQRI+ELE  L+E +    +G       +  KI +LQ+
Sbjct: 482 VQALLEDSEERLNILRGKNRKANQRIIELENRLEEALGSQLSGDNKTDINLGQKITQLQD 541

Query: 533 EIKNL---KEQINHQQEEH----LEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANS 585
           E+  L   KE++  Q EE       Q +    LQ+ +T+++ E    EE+ +KY+EKA S
Sbjct: 542 ELGKLQAEKERLILQVEERENALQAQKQKAFALQEKLTRREYENAALEERYKKYVEKAKS 601

Query: 586 AFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEK----KEQQEKLIATAFYNL 641
             K LDP  QN ++ NE+  LR +  ++ K+++D+E++L++    KE +EKL+ +AFY L
Sbjct: 602 VIKSLDPK-QNNSSPNEVAVLRNQILEQRKIMEDMERSLKESKLIKEMEEKLMISAFYRL 660

Query: 642 ALQKQRQTADNRLASITFSQQPQSFLTKQRQASRRNVRP 680
            L   R+  D+RLA+++ + Q QSFL +QRQ S R   P
Sbjct: 661 GLTCHREAIDHRLAALSSASQGQSFLARQRQPSARRHPP 699

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307166540|gb|EFN60607.1| Protein Hook-like protein 3 [Camponotus floridanus]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 321/704 (45%), Positives = 478/704 (67%), Gaps = 36/704 (5%)

Query: 7   DQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGA 66
           D  +  N L+KWL TF L APH S  DI+DGVA+A+AL QIAPEWF+ +W AKIKTD+GA
Sbjct: 3   DHRQQLNNLIKWLGTFDLQAPHSSAEDISDGVALAEALAQIAPEWFTAVWKAKIKTDVGA 62

Query: 67  NNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCA 126
           N WRL++SN+KKI E +++Y+ E  +Q L  + K D  KI E+ D+ EL  L+QLILGCA
Sbjct: 63  N-WRLRVSNMKKIVEAVMEYYMECLNQPLSGYVKPDAIKIGEHYDSDELRHLLQLILGCA 121

Query: 127 INCNRKQNYITKIMELEESVQQVIMQSIQELEN-LHGSTHSLNMSL------DPQVQNLV 179
           +NC++KQ YITKIM +EE+VQQ IMQSIQELE+ +HG   S N +       D   Q L 
Sbjct: 122 VNCDQKQQYITKIMGMEETVQQAIMQSIQELESSVHGPKLSSNFNFESFDTADGTQQRLY 181

Query: 180 AELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGN--- 236
           AELQ  ID +DQ+AQ+C ELD Q+S+LQEEK+ L+ E ++ +ER  E F  P   G+   
Sbjct: 182 AELQVAIDMKDQLAQKCHELDQQLSLLQEEKAALIAENKKFQERLDE-FENPEESGSIMK 240

Query: 237 -SSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEV 295
            S +R+Q+DALK+ELFK E++RDDYR+K E+  K++ +L+ +   L++ A EA +LKDE+
Sbjct: 241 YSGLRKQVDALKDELFKMETSRDDYRLKAELLEKEVLELQSRQEDLQKAADEANHLKDEI 300

Query: 296 DILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGN 355
           D LRETA+KV KYE +IE+YKKK E+L DLK+Q+K  E KN+ Y+Q  LD EEE+K+   
Sbjct: 301 DALRETADKVAKYEIMIESYKKKMEDLSDLKRQLKISEDKNVEYLQAKLDYEEEVKRTMM 360

Query: 356 WKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKET 415
            ++ ++  K+Q++E++++ +E++ + D+ EFE KK++ K+ +LQRE+++L++ERD+LKET
Sbjct: 361 LRNHLEACKQQLTEVHHRLDEQSNKYDRLEFEGKKMEAKLGALQRERDRLVIERDALKET 420

Query: 416 NEELKC-CQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIE 474
           NEELKC  QLQ +++    +   +     + VP+ E+++KL+RL  EN ML+M Q  + E
Sbjct: 421 NEELKCNTQLQTAENMAKPSADSSGVAGTEMVPL-EIKEKLLRLQLENKMLKMKQTGN-E 478

Query: 475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERV-------TEDAAGMKVKI 527
            KL  V A LDD  +++     +NRKANQRI+ELE +L+E +        ++ AG+  K+
Sbjct: 479 DKLPSVQALLDDSEERLNTLRGQNRKANQRIMELETKLEEVMGTQTSDDNKNDAGLNQKM 538

Query: 528 FELQNEIKNL---KEQINHQQEEH----LEQGKLIEKLQDSITQKDSEIQDYEEKNRKYI 580
            +LQ+E++ +   +E++  Q EE       Q +    +Q+ +T+K+ E    EE+ +KYI
Sbjct: 539 SQLQDELRKMQAERERLTLQLEERESALQAQKQKAFAIQEKLTRKEYENAALEERYKKYI 598

Query: 581 EKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEK----KEQQEKLIAT 636
           EKA S  K LDP  QN ++ +E+  LR +  ++ KM++D+E+++++    +E +EKL+ T
Sbjct: 599 EKAKSVIKSLDPK-QNNSSPSEVVVLRNQLLEQRKMIEDMERSMKESRLLREMEEKLMVT 657

Query: 637 AFYNLALQKQRQTADNRLASITFSQQPQSFLTKQRQASRRNVRP 680
           AF+ L L   R+  D RLA+++ S Q QSFL +QRQ S R   P
Sbjct: 658 AFHRLGLNCHREVIDQRLAALS-SGQGQSFLARQRQPSARRHPP 700

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66500873|ref|XP_395724.2| PREDICTED: protein Hook homolog 3-like isoform 1 [Apis mellifera]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 320/701 (45%), Positives = 474/701 (67%), Gaps = 43/701 (6%)

Query: 13  NILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLK 72
           N L+KWL TF L + H +  DI+DGVA+A  L QIAPEWF+  W AKIKTD+ ++NWRLK
Sbjct: 7   NNLIKWLDTFDLQSSHSTAEDISDGVALADVLAQIAPEWFTAAWRAKIKTDV-SSNWRLK 65

Query: 73  ISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCNRK 132
           +SNLKKI E I++Y+ E  +Q L  + K D  KI E+ D  EL RL+QLILGCA+NCN+K
Sbjct: 66  VSNLKKIIEAIMEYYIECLNQQLSGYIKPDATKIGEHCDNHELRRLLQLILGCAVNCNQK 125

Query: 133 QNYITKIMELEESVQQVIMQSIQELE-NLHGSTHSLNMSL--------DPQVQNLVAELQ 183
           Q YIT+IM +EE+VQQ IMQSIQELE N+HG   SL  SL        D   Q L+ ELQ
Sbjct: 126 QQYITRIMGMEETVQQAIMQSIQELESNMHGPRLSLGTSLNFESLDVADGTQQRLLTELQ 185

Query: 184 TVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKG---NSSMR 240
             +D ++Q+AQ+C ELD Q+S+LQEEK+ L+ E ++L+ER  E F  P +     +S +R
Sbjct: 186 VTVDMKEQLAQKCHELDQQLSLLQEEKAALMTENKKLQERLDE-FENPESCSIFRHSGLR 244

Query: 241 RQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRE 300
           +Q++ALK+ELFK E++RDDYR+K+E+  K++ +L+ +   L++ A EA  LKDE+D LRE
Sbjct: 245 KQVEALKDELFKVETSRDDYRLKIELLEKEVLELQSRQEDLQKAADEANNLKDEIDALRE 304

Query: 301 TAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQV 360
           TA+KV KYE  IE+YKKK E+L DL++QVK LE KNL Y+Q  +D EEE K+    ++ +
Sbjct: 305 TADKVAKYEQTIESYKKKMEDLSDLRRQVKILEDKNLEYLQSKIDYEEESKRTTMLRNHL 364

Query: 361 DMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420
           ++ K+Q++E +++ +E+T + DK EFE KK++ ++++LQRE+++LIVERD+LKETNEELK
Sbjct: 365 EVCKQQLAEAHHKLDEQTNKCDKLEFEGKKMEAQLSTLQRERDRLIVERDALKETNEELK 424

Query: 421 CCQLQQSKSAELNTLGENLDLSEDS--VPITELRQKLVRLTHENNMLQMNQKDDIEGKLN 478
           C QLQ ++    N    + D   ++  +P+ E++++L+ L HEN ML++ Q  + E KL 
Sbjct: 425 CTQLQAAE----NITKPSTDTVTNTEMIPL-EIKEELLCLKHENKMLKLKQMGN-EDKLP 478

Query: 479 IVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAG--------MKVKIFEL 530
            V A L+D  +++     +NRKANQRI+ELE  L+E +   ++G        +  KI +L
Sbjct: 479 TVQALLEDSEERLNTLRGKNRKANQRIIELENRLEEALGNQSSGDNKTDNINLGQKITQL 538

Query: 531 QNEIKNL---KEQINHQQEEH----LEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKA 583
           Q+E++ +   KE++  Q EE       Q + +  LQ+ +T+++ +    EE+ +KY+EKA
Sbjct: 539 QDEVRKIQSEKERLILQVEERENALQTQKQKVFALQEKLTRREYDNAALEERYKKYVEKA 598

Query: 584 NSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEK----KEQQEKLIATAFY 639
            S  K LDP  QN ++ NE+  LR +  ++ K+++D+E++L++    KE +EKL+ +AFY
Sbjct: 599 KSVIKSLDPK-QNNSSPNEVAVLRNQILEQRKIMEDMERSLKESKLIKEMEEKLMISAFY 657

Query: 640 NLALQKQRQTADNRLASITFSQQPQSFLTKQRQASRRNVRP 680
            L L   R+  D RLA+++ S Q QSFL +QRQ S R   P
Sbjct: 658 RLGLTCHREAIDQRLAALS-SGQGQSFLARQRQPSARRHPP 697

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862401|ref|XP_003706672.1| PREDICTED: protein Hook homolog [Megachile rotundata]

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 324/710 (45%), Positives = 476/710 (67%), Gaps = 47/710 (6%)

Query: 6   EDQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIG 65
           EDQ +L N L+KWL TF L  PH +  DI+DGVA+A AL QIAPEWF+  W AKIKTD+ 
Sbjct: 2   EDQ-QLSN-LIKWLDTFDLQTPHLTAEDISDGVALADALAQIAPEWFTAAWRAKIKTDV- 58

Query: 66  ANNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGC 125
           ++NWRLK+SNLKKI E +++Y+ E  +Q L  + K D  KI E+ D  EL RL+QLILGC
Sbjct: 59  SSNWRLKVSNLKKIVEAVMEYYIECLNQQLSGYIKPDATKIGEHCDNHELRRLLQLILGC 118

Query: 126 AINCNRKQNYITKIMELEESVQQVIMQSIQELE-NLHGSTHSLNMSL--------DPQVQ 176
           A+NCN+KQ YIT+IM +EE+VQQ IMQSIQELE N++G   SL  SL        D   Q
Sbjct: 119 AVNCNQKQQYITRIMGMEETVQQAIMQSIQELEGNMNGPRLSLGTSLNFESLDVADGNQQ 178

Query: 177 NLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGN 236
            L+AELQ  +D ++Q+AQ+C ELD Q+S+LQEEK+ LV E ++L+ER  E F  P   G+
Sbjct: 179 RLLAELQLNVDMKEQLAQKCHELDQQLSLLQEEKAALVAENKKLQERLDE-FENPEETGS 237

Query: 237 ----SSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLK 292
               S +R+Q++ALK+ELFK E++RDDYR+K+E+  K++ +L+ +   L++ A E  +LK
Sbjct: 238 ILKYSGLRKQVEALKDELFKVETSRDDYRLKVELLEKEVLELQSRQEDLQKAADEVNHLK 297

Query: 293 DEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKK 352
           DE+D L+ETA+KV KYE  IE+YKKK E+L DL++QVK LE KNL Y+Q  +D EEE+K+
Sbjct: 298 DEIDALKETADKVTKYELTIESYKKKMEDLSDLRRQVKILEDKNLEYLQSKIDYEEEVKR 357

Query: 353 NGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSL 412
               ++ +++ K+Q++E +++ +E+T + DK EFE KK++ K+++LQRE+++L+VERD L
Sbjct: 358 TAMLRNHLEVCKQQLAEAHHKLDEQTNKCDKLEFEGKKMEAKLSTLQRERDRLVVERDVL 417

Query: 413 KETNEELKCCQLQQSKS---AELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQ 469
           KETNEELKC QLQ +++      ++   N+++    +P+ E++ KL+ L +EN ML++ Q
Sbjct: 418 KETNEELKCTQLQAAENITKPSTDSTVTNMEM----IPL-EIKAKLLCLQYENKMLKLKQ 472

Query: 470 KDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKE--------RVTEDAA 521
           K + E KL  V   L D  +++     +NRKANQRI+ELE  L+E         V  D  
Sbjct: 473 KGN-EDKLPTVQDLLQDSEERLNTLRGQNRKANQRIIELENRLEEVLGNHSNGDVKTDNG 531

Query: 522 GMKVKIFELQNEIKNL---KEQINHQQEEH----LEQGKLIEKLQDSITQKDSEIQDYEE 574
            +  KI +LQ+E++ +   KE++  Q EE       Q +    LQ+ +T+++ +    EE
Sbjct: 532 NLGQKITQLQDELRRIQAEKERLLLQVEERENALQAQKQKAFALQEKLTRREYDNAALEE 591

Query: 575 KNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKK----EQQ 630
           + +KY+EKA S  K LDP  QN ++ NE+  LR +  ++ K+++D+E++ ++     E +
Sbjct: 592 RYKKYVEKAKSVIKSLDPK-QNNSSPNEVAVLRNQILEQRKIMEDMERSFKESKLITEME 650

Query: 631 EKLIATAFYNLALQKQRQTADNRLASITFSQQPQSFLTKQRQASRRNVRP 680
           EKLI +AFY L L   R+  D RLA+++ S Q QSFL +QRQ S R   P
Sbjct: 651 EKLILSAFYRLGLSCHREAIDQRLAALS-SGQGQSFLARQRQPSARRHPP 699

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345480895|ref|XP_001606402.2| PREDICTED: protein Hook homolog 3-like [Nasonia vitripennis]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 312/704 (44%), Positives = 466/704 (66%), Gaps = 52/704 (7%)

Query: 15  LLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKIS 74
           L+KWL TF L A H +  DI++GVA+A+AL QIAPEWF+  W +KIK+D+G+N WRLK+S
Sbjct: 9   LIKWLDTFELRAAHSTAEDISNGVALAEALSQIAPEWFTASWNSKIKSDVGSN-WRLKVS 67

Query: 75  NLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCNRKQN 134
           NLKKI E + +Y+ E  +Q L  + K D  KI E  D+ EL RL+QL+LGCA+NCN KQ 
Sbjct: 68  NLKKIIEAVTEYYVECLNQPLAGYVKPDAQKIGELCDSHELKRLLQLVLGCAVNCNEKQY 127

Query: 135 YITKIMELEESVQQVIMQSIQELEN-LHGSTHSLNMSL--------DPQVQNLVAELQTV 185
           YIT+IM LEE+VQQVIMQSIQELEN +HG   SL  SL        D   Q L++ELQ  
Sbjct: 128 YITRIMGLEEAVQQVIMQSIQELENSVHGPRLSLGASLNFETFDVADGAQQKLLSELQAA 187

Query: 186 IDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGN------SSM 239
           +DARD MAQRC ELD Q+S+LQEE+  L  E ++L+ER  E F  P   G       S +
Sbjct: 188 VDARDNMAQRCHELDQQLSLLQEERITLQVENKKLQERLDE-FENPEESGAPTSLKYSGL 246

Query: 240 RRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILR 299
           R+Q++ LK+E+FK E++RDDYR+K+E+  K++ +L++K   L++ A EA +LKDEVD LR
Sbjct: 247 RKQVETLKDEMFKLETSRDDYRLKVELLEKEVLELQMKQIDLQKAADEANHLKDEVDALR 306

Query: 300 ETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQ 359
           ETA+KV KYE  IE YKKK E+  DL++QVK LE KN  Y+Q  ++ EEE+K+ G+ ++ 
Sbjct: 307 ETADKVAKYESAIEAYKKKMEDFSDLRRQVKILEDKNTEYLQNKIEYEEEVKRAGHLRNH 366

Query: 360 VDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEEL 419
           +++ KKQ+ E + + +E+T + DK E+E KKL+ ++ ++QRE+++L++ERD+LKETNEEL
Sbjct: 367 LELLKKQLGEAHFKLDEQTNKCDKLEYEAKKLETQLGAVQRERDRLVIERDALKETNEEL 426

Query: 420 KCCQLQQSKSAELNTLGENLDLSEDSVPI------TELRQKLVRLTHENNMLQMNQKDDI 473
           KC        A+LNT+    +LS D   +        +++KLV L HEN ML++NQ+   
Sbjct: 427 KC--------AQLNTMENVTNLSTDEAVVNTEIIPPAIKEKLVLLQHENKMLKLNQQKGS 478

Query: 474 EGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKV---KIFEL 530
           + KL +  A L+D  +++     +NRKANQRI+ELE +L+E     A+  K    K  +L
Sbjct: 479 DDKLPM-QALLEDSEERLNNLRGQNRKANQRIIELENKLEELAGNQASESKSEQQKFQQL 537

Query: 531 QNEIKNLKEQI------NHQQEEHLE-QGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKA 583
           Q+E++ L+ +       N ++E  L+ Q + +  LQ+++++K+ E+   EE+ +KY+EKA
Sbjct: 538 QDELRRLQLECERLSVHNEERESSLQSQKQKVLSLQENLSRKECELAALEERYKKYVEKA 597

Query: 584 NSAFKLLDPT------VQNVAALNELKNLRKKN--DDKDKMLDDLE-KTLEKKEQQEKLI 634
            S  K L+P         N  + +E++N +  +  D ++K ++D+E K +  ++ +EKL+
Sbjct: 598 KSVIKALNPKQLQQQHGSNAQSPSEMRNRQDGSAEDKRNKTIEDVERKDMIIRDMEEKLM 657

Query: 635 ATAFYNLALQKQRQTADNRLASITFSQQPQSFLTKQRQASRRNV 678
            +AFY+  L + R+  D RLA+++ S Q QSFL +QRQ + R +
Sbjct: 658 ISAFYHYGLTRHREAVDQRLAALS-SGQGQSFLARQRQPTPRKL 700

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322792305|gb|EFZ16289.1| hypothetical protein SINV_04350 [Solenopsis invicta]

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 310/693 (44%), Positives = 464/693 (66%), Gaps = 37/693 (5%)

Query: 13  NILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLK 72
             L+KWL TF L APH S  +I+DGVA+A+AL +IAPEWF+  W AKIKTD+G  NWRLK
Sbjct: 9   GYLIKWLSTFDLQAPHSSAEEISDGVALAEALTKIAPEWFTAAWKAKIKTDVG-TNWRLK 67

Query: 73  ISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCNRK 132
           +SN+KKI E +++Y+ E  +Q L  + K D  KI E  D  EL RL+QL+LGCA+NC++K
Sbjct: 68  MSNMKKIVEAVMEYYVECLNQQLTGYVKPDATKIGERCDIDELRRLLQLVLGCAVNCDQK 127

Query: 133 QNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQM 192
           Q YIT+IM +EE+VQQ IMQSIQEL     +  S+    D   Q L AELQ  +D +DQ+
Sbjct: 128 QQYITRIMGMEETVQQAIMQSIQEL-----NFESIVDVADGTQQTLYAELQATVDMKDQL 182

Query: 193 AQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGN----SSMRRQMDALKE 248
           AQ+C ELD Q+S+LQEEK+ L+ E ++L+ER  E F  P   G+    S +R+Q++ALK+
Sbjct: 183 AQKCHELDQQLSLLQEEKTTLIAENKKLQERLDE-FENPEESGSILKYSGLRKQVEALKD 241

Query: 249 ELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKY 308
           ELFK E++RDDYR+K+E+  K++ +L+ +   L++ A EA +LKDEVD LRET +KV KY
Sbjct: 242 ELFKMETSRDDYRLKVELLEKEVLELQSRQEDLQKAADEANHLKDEVDALRETTDKVAKY 301

Query: 309 EGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMS 368
           E +IE+YKKK E++ DLK+QVK LE KN+ Y+Q  LD EEE+K+    ++ +++ K+Q++
Sbjct: 302 EIMIESYKKKMEDMSDLKRQVKILEDKNVEYLQAKLDYEEEVKRTMMLRNHLEVCKQQLT 361

Query: 369 ELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSK 428
           E+ ++ +E++ + D+ EFE KK++ K+ +LQRE+++LI+ERD+LKETNEELKC QLQ  +
Sbjct: 362 EVQHRLDEQSNKYDRLEFEGKKMEAKLGALQRERDRLIIERDALKETNEELKCTQLQAVE 421

Query: 429 S-AELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDV 487
           + A+ NT    +  +E  +P+ E+++KL  L  EN M++M    + E KL  V A L+D 
Sbjct: 422 NMAKPNTDSTGVSATE-MIPL-EVKEKLHCLQLENKMMKMKLSGN-EDKLPSVQALLEDS 478

Query: 488 TQQVKMKTLENRKANQRILELEAELKERVT--------EDAAGMKVKIFELQNEIK---- 535
            +++     +NRKANQRI+ELE +L+E +          D  G+  K+ +LQ+E++    
Sbjct: 479 EERLNTLRGQNRKANQRIMELENKLEEAMGTQISGDSKSDNVGLNQKMSQLQDELRKAQT 538

Query: 536 ---NLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDP 592
               L  Q+  ++     Q +    LQ+ +T+K+ E    EE+ +KYIEKA S  K LDP
Sbjct: 539 DRDRLTLQLEERESSLQTQKQKAFALQEKLTRKEYENAALEERYKKYIEKAKSVIKSLDP 598

Query: 593 TVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEK----KEQQEKLIATAFYNLALQKQRQ 648
              N ++ +E+  LR +  ++ KM++D+E+++++    ++ +EKL+ TAF+ L L   R+
Sbjct: 599 KQSN-SSPSEVAVLRNQLVEQRKMIEDMERSMKEAKLLRDMEEKLMVTAFHRLGLNCHRE 657

Query: 649 TADNRLASITFSQQPQSFLTKQRQ-ASRRNVRP 680
             D RLA+++ S Q QSFL +QRQ  SRR   P
Sbjct: 658 MMDQRLAALS-SGQGQSFLARQRQPTSRRGYPP 689

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214676|gb|EFN89605.1| Protein Hook-like protein 3 [Harpegnathos saltator]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 312/698 (44%), Positives = 463/698 (66%), Gaps = 42/698 (6%)

Query: 16  LKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISN 75
           +KWL TF L APH S  DI+DGVA+A+AL QIAPEWF+ +W AKIKTD+ A NWRL++SN
Sbjct: 13  IKWLDTFDLQAPHNSAEDISDGVALAEALAQIAPEWFTVVWKAKIKTDV-ATNWRLRVSN 71

Query: 76  LKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCNRKQNY 135
           +KKI E +++Y+ E  +Q L  + K D  KI E+ D+ EL RL+QLILGCA+NC++KQ Y
Sbjct: 72  MKKIVEAVMEYYVECLNQQLSGYIKPDATKIGEHCDSDELRRLLQLILGCAVNCDQKQQY 131

Query: 136 ITKIMELEESVQQVIMQSIQELEN-LHGSTHSLNMSL--------DPQVQNLVAELQTVI 186
           IT+IM +EE+VQQ IMQSIQELE+ +HG   SL  SL        D   Q L AELQT +
Sbjct: 132 ITRIMSMEETVQQAIMQSIQELESSVHGPRLSLGTSLNFEPMDMADGIQQRLYAELQTAV 191

Query: 187 DARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGN----SSMRRQ 242
           D +DQ+AQRC ELD Q+S+LQEEK+ L+ E ++L+ER  E F  P   G+    S +R+Q
Sbjct: 192 DMKDQLAQRCHELDQQLSLLQEEKAALIVENKKLQERLDE-FENPEESGSILKYSGLRKQ 250

Query: 243 MDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETA 302
            +ALK+ELFK E++RDDYR+K+E+  K++ +L+L+   L++ A EA +LKDEVD LRET 
Sbjct: 251 AEALKDELFKVETSRDDYRLKVELLEKEVLELQLRQEDLQKAADEANHLKDEVDALRETV 310

Query: 303 EKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDM 362
           +KV KYE  IE+YKKK E++ DLK+Q+K LE KNL Y+Q  LD EEE K+    ++ +++
Sbjct: 311 DKVAKYELTIESYKKKMEDMGDLKRQMKILEDKNLEYLQVKLDYEEESKRTTMLRNHLEI 370

Query: 363 YKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCC 422
            K+Q++E  ++ +E + + D+   E+KK + ++ +LQRE+++L++ERD+L+ETNEELKC 
Sbjct: 371 CKQQLTETQHKLDEMSGKYDRLVCEDKKKEARMNTLQRERDRLVIERDALRETNEELKCA 430

Query: 423 QLQQSKS-AELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVN 481
           QLQ +++ A+ +T+  N     + +P+ E+++KL+ L  EN ML+  QK + E KL  V 
Sbjct: 431 QLQAAENMAKPSTVDSNSVAGTEMIPL-EVKEKLLCLQLENKMLKARQKGN-EEKLPSVQ 488

Query: 482 AKLDDVTQQVKMKTLENRKANQRILELEAELKERVTE--------DAAGMKVKIFELQNE 533
             LD+  +++     +NRKANQ+I+E+EA+L+E   +        D+ G+  K  +LQ+E
Sbjct: 489 TLLDESEERLNTLREQNRKANQKIMEMEAKLEEVTMQSSNADGKSDSGGLGQKAVQLQDE 548

Query: 534 IKNL---KEQINHQQEEHLE----QGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSA 586
           ++     KE++  Q EE       Q +    LQ+ +T+K+ E    EE  +K +EKA S 
Sbjct: 549 LRKAQAEKERLTLQLEEREATLQVQKQKTATLQEKLTRKEYEDAAREEHYKKNVEKAKSV 608

Query: 587 FKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEK----KEQQEKLIATAFYNLA 642
            K L+ +  +   L     LR +  ++ K ++++E+T+++    +E +EKL+ TAFY L 
Sbjct: 609 IKSLESSKHSPTEL----VLRNQLLEQRKAIEEMERTVKESRLLREMEEKLMVTAFYKLG 664

Query: 643 LQKQRQTADNRLASITFSQQPQSFLTKQRQASRRNVRP 680
           L  QR   D RLA+++ S Q  SFL +QRQ S R   P
Sbjct: 665 LSAQRDAMDQRLATLS-SGQGHSFLARQRQPSARRHSP 701

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	684
UNIPROTKB|Q6GQ73	719	hook3 "Protein Hook homolog 3"	0.847	0.806	0.418	4.5e-122
UNIPROTKB|Q86VS8	718	HOOK3 "Protein Hook homolog 3"	0.840	0.800	0.432	5.1e-122
UNIPROTKB|F1PQQ3	718	HOOK3 "Uncharacterized protein	0.849	0.809	0.430	1.1e-121
UNIPROTKB|E1B7Q0	718	HOOK3 "Protein Hook homolog 3"	0.840	0.800	0.428	4.6e-121
MGI|MGI:2443554	718	Hook3 "hook homolog 3 (Drosoph	0.849	0.809	0.425	5.8e-121
UNIPROTKB|F1MA65	699	Hook3 "Protein Hook3" [Rattus	0.789	0.772	0.428	9.4e-114
ZFIN|ZDB-GENE-041001-159	715	hook1 "hook homolog 1" [Danio	0.815	0.780	0.412	3.6e-112
UNIPROTKB|F6Y057	728	HOOK1 "Uncharacterized protein	0.869	0.817	0.391	4.2e-111
UNIPROTKB|F1NJ60	718	HOOK1 "Protein Hook homolog 1"	0.855	0.814	0.394	1.4e-110
UNIPROTKB|Q5ZJ27	718	HOOK1 "Protein Hook homolog 1"	0.855	0.814	0.391	2.6e-109

UNIPROTKB|Q6GQ73 hook3 "Protein Hook homolog 3" [Xenopus laevis (taxid:8355)]

 Score = 1142 (407.1 bits), Expect = 4.5e-122, Sum P(2) = 4.5e-122
 Identities = 251/600 (41%), Positives = 382/600 (63%)

Query:     7 DQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGA 66
             D+ +LC  LL W+QTF + AP +++ D+T GVAMA  L +I P +F E WL +IKTD+G 
Sbjct:     5 DRVDLCESLLTWIQTFHVDAPCKTVEDLTSGVAMAMVLQKIDPVYFDENWLNRIKTDVG- 63

Query:    67 NNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCA 126
             +NWRLKISNLKKI +GI+DY  E     + +F   DV  I E+ DA EL R++QLILGCA
Sbjct:    64 DNWRLKISNLKKILKGILDYNHEILGHQVNDFTLPDVILIGEHSDASELGRMLQLILGCA 123

Query:   127 INCNRKQNYITKIMELEESVQQVIMQSIQELENLHGSTH---SLNMSLDPQVQNLVAELQ 183
             + C +KQ YI  IM +EESVQ V+M +IQEL +              LD Q++    EL 
Sbjct:   124 VKCEQKQEYIQAIMMMEESVQHVVMTAIQELMSKETPVSIGTDAYAELDRQLKKANEELN 183

Query:   184 TVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERF-QENFVE----PTNKGNSS 238
               + A++++AQRC ELDMQV+ LQEEKS L+ E + L ER  Q + +E    P  + +  
Sbjct:   184 DALSAKEEIAQRCHELDMQVAGLQEEKSSLLAENQILMERMNQSDSLEDPNSPAGRRHLQ 243

Query:   239 MRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDIL 298
             ++ Q++ L+EE F+ E+++DDYRI+ E   K++ +   +   L   A EA+ LKDE+D+L
Sbjct:   244 LQTQLEQLQEETFRLEASKDDYRIRCEELEKEITEFRQQNEDLITLADEAQSLKDEMDVL 303

Query:   299 RETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKS 358
             R +++KV K E  +++YKKK E+L DL++QVK LE KN  Y+Q T+ LEEEL+K    +S
Sbjct:   304 RHSSDKVAKLESQVDSYKKKLEDLGDLRRQVKLLEEKNTMYMQNTVSLEEELRKANAARS 363

Query:   359 QVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEE 418
             Q++ YK+Q+ EL N+ +EE+K+ADK EFE K+L+EK+ SLQ+EK++L  ERDSLKET EE
Sbjct:   364 QLETYKRQVVELQNRLSEESKKADKLEFEYKRLKEKIDSLQKEKDRLRSERDSLKETIEE 423

Query:   419 LKCCQLQQSK--SAELNTLG--ENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIE 474
             L+C Q Q+ +  SA L  LG  E  D     +   E+++KL+RL HEN ML++NQ+    
Sbjct:   424 LRCVQAQEGQLTSAGLMPLGNQEPTDSLAAEIVTPEIKEKLIRLQHENKMLKINQEGSDN 483

Query:   475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEA---ELKERVTEDAAGMKVKIFELQ 531
              K++++ + LDD   +      ENR  NQR++E+++   EL++ + E  A  +  +  L+
Sbjct:   484 EKISLLQSLLDDANMRKNELETENRLVNQRLIEMQSQVEELQKSLQEQGAKTEDSLL-LK 542

Query:   532 NEIKNLKEQINHQQEEHLEQGKLIEKLQ---DSITQKDSEIQDYEEKNRKYIEKANSAFK 588
              +++   E+++    E  ++  +IE L+   ++ + K  E+QD   K  + +++    +K
Sbjct:   543 KKLEEHLEKLHEANNELQKKRAIIEDLEPRYNNSSMKIEELQDALRKKEEDMKQMEERYK 602

GO:0007032 "endosome organization" evidence=ISS

GO:0007040 "lysosome organization" evidence=ISS

GO:0008333 "endosome to lysosome transport" evidence=ISS

GO:0045022 "early endosome to late endosome transport" evidence=ISS

UNIPROTKB|Q86VS8 HOOK3 "Protein Hook homolog 3" [Homo sapiens (taxid:9606)]

 Score = 1200 (427.5 bits), Expect = 5.1e-122, P = 5.1e-122
 Identities = 255/590 (43%), Positives = 385/590 (65%)

Query:     7 DQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGA 66
             +++ELC  LL W+QTF + AP Q++ D+T+GV MAQ L +I P +F E WL +IKT++G 
Sbjct:     8 ERAELCESLLTWIQTFNVDAPCQTVEDLTNGVVMAQVLQKIDPAYFDENWLNRIKTEVG- 66

Query:    67 NNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCA 126
             +NWRLKISNLKKI +GI+DY  E   Q + +F   DV+ I E+ DA EL R++QLILGCA
Sbjct:    67 DNWRLKISNLKKILKGILDYNHEILGQQINDFTLPDVNLIGEHSDAAELGRMLQLILGCA 126

Query:   127 INCNRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLN---MSLDPQVQNLVAELQ 183
             +NC +KQ YI  IM +EESVQ V+M +IQEL +      + N   + LD Q++    EL 
Sbjct:   127 VNCEQKQEYIQAIMMMEESVQHVVMTAIQELMSKESPVSAGNDAYVDLDRQLKKTTEELN 186

Query:   184 TVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERF-QENFVE----PTNKGNSS 238
               + A++++AQRC ELDMQV+ LQEEKS L+ E + L ER  Q + +E    P  + +  
Sbjct:   187 EALSAKEEIAQRCHELDMQVAALQEEKSSLLAENQVLMERLNQSDSIEDPNSPAGRRHLQ 246

Query:   239 MRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDIL 298
             ++ Q++ L+EE F+ E+A+DDYRI+ E   K++ +L  + + L   A EA+ LKDE+D+L
Sbjct:   247 LQTQLEQLQEETFRLEAAKDDYRIRCEELEKEISELRQQNDELTTLADEAQSLKDEIDVL 306

Query:   299 RETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKS 358
             R +++KV K EG +E+YKKK E+L DL++QVK LE KN  Y+Q T+ LEEEL+K    +S
Sbjct:   307 RHSSDKVSKLEGQVESYKKKLEDLGDLRRQVKLLEEKNTMYMQNTVSLEEELRKANAARS 366

Query:   359 QVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEE 418
             Q++ YK+Q+ EL N+ +EE+K+ADK +FE K+L+EKV SLQ+EK++L  ERDSLKET EE
Sbjct:   367 QLETYKRQVVELQNRLSEESKKADKLDFEYKRLKEKVDSLQKEKDRLRTERDSLKETIEE 426

Query:   419 LKCCQLQQSK--SAELNTLG--ENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIE 474
             L+C Q Q+ +  +  L  LG  E+ D     +   E+R+KL+RL HEN ML++NQ+    
Sbjct:   427 LRCVQAQEGQLTTQGLMPLGSQESSDSLAAEIVTPEIREKLIRLQHENKMLKLNQEGSDN 486

Query:   475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKE--RVTEDAAGMKVKIFELQN 532
              K+ ++ + LDD   +      ENR  NQR+LE++++++E  +  +D          L+ 
Sbjct:   487 EKIALLQSLLDDANLRKNELETENRLVNQRLLEVQSQVEELQKSLQDQGSKAEDSVLLKK 546

Query:   533 EIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEK 582
             +++   E+++    E  ++  +IE L+        +I++ +E  RK  E+
Sbjct:   547 KLEEHLEKLHEANNELQKKRAIIEDLEPRFNNSSLKIEELQEALRKKEEE 596

GO:0005874 "microtubule" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0034451 "centriolar satellite" evidence=IEA

GO:0097150 "neuronal stem cell maintenance" evidence=IEA

GO:0008017 "microtubule binding" evidence=IDA

GO:0051645 "Golgi localization" evidence=IMP

GO:0031122 "cytoplasmic microtubule organization" evidence=IMP

GO:0005801 "cis-Golgi network" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0007032 "endosome organization" evidence=IMP

GO:0007040 "lysosome organization" evidence=IMP

GO:0045022 "early endosome to late endosome transport" evidence=IMP

GO:0008333 "endosome to lysosome transport" evidence=IMP

GO:0030897 "HOPS complex" evidence=IDA

GO:0070695 "FHF complex" evidence=IDA

GO:0022027 "interkinetic nuclear migration" evidence=ISS

GO:0050768 "negative regulation of neurogenesis" evidence=ISS

GO:0071539 "protein localization to centrosome" evidence=ISS

GO:0000242 "pericentriolar material" evidence=ISS

GO:0005813 "centrosome" evidence=ISS;IDA

GO:0034454 "microtubule anchoring at centrosome" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|F1PQQ3 HOOK3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1197 (426.4 bits), Expect = 1.1e-121, P = 1.1e-121
 Identities = 257/597 (43%), Positives = 387/597 (64%)

Query:     1 MNNTQE-DQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAK 59
             M N +  ++ ELC  LL W+QTF + AP Q++ D+T+GV MAQ L +I P +F E WL +
Sbjct:     1 MFNVESVERVELCESLLTWIQTFNVDAPCQTVEDLTNGVVMAQVLQKIDPAYFDENWLNR 60

Query:    60 IKTDIGANNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLM 119
             IKT++G +NWRLKISNLKKI +GI+DY  E   Q + +F   DV+ I E+ DA EL R++
Sbjct:    61 IKTEVG-DNWRLKISNLKKILKGILDYNHEILGQQINDFTLPDVNLIGEHSDAAELGRML 119

Query:   120 QLILGCAINCNRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLN---MSLDPQVQ 176
             QLILGCA+NC +KQ YI  IM +EESVQ V+M +IQEL +      + N   + LD Q++
Sbjct:   120 QLILGCAVNCEQKQEYIQAIMMMEESVQHVVMTAIQELMSKESPVSAGNDAYVDLDRQLK 179

Query:   177 NLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERF-QENFVE----P 231
                 EL   + A++++AQRC ELDMQV+ LQEEKS L+ E + L ER  Q + +E    P
Sbjct:   180 KTTEELNEALSAKEEIAQRCHELDMQVAALQEEKSSLLAENQVLMERLNQSDSIEDPNSP 239

Query:   232 TNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYL 291
               + +  ++ Q++ L+EE F+ E+A+DDYRI+ E   K++ +L  + + L   A EA+ L
Sbjct:   240 AGRRHLQLQTQLEQLQEETFRLEAAKDDYRIRCEELEKEISELRQQNDELTTLADEAQSL 299

Query:   292 KDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELK 351
             KDE+D+LR +++KV K EG +E+YKKK E+L DL++QVK LE KN  Y+Q T+ LEEEL+
Sbjct:   300 KDEIDVLRHSSDKVSKLEGQVESYKKKLEDLGDLRRQVKLLEEKNTMYMQNTVSLEEELR 359

Query:   352 KNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDS 411
             K    +SQ++ YK+Q+ EL N+ +EE+K+ADK +FE K+L+EKV SLQ+EK++L  ERDS
Sbjct:   360 KANAARSQLETYKRQVVELQNRLSEESKKADKLDFEYKRLKEKVDSLQKEKDRLRTERDS 419

Query:   412 LKETNEELKCCQLQQSK--SAELNTLG--ENLDLSEDSVPITELRQKLVRLTHENNMLQM 467
             LKET EEL+C Q Q+ +  +  L  LG  E+ D     +   E+R+KL+RL HEN ML++
Sbjct:   420 LKETIEELRCVQAQEGQLTTQGLMPLGSQESSDSLAAEIVTPEIREKLIRLQHENKMLKI 479

Query:   468 NQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKE--RVTEDAAGMKV 525
             NQ+     K+ ++ + LDD   +      ENR  NQR+LE++++++E  +  +D      
Sbjct:   480 NQEGSDNEKIALLQSLLDDANLRKNELETENRLVNQRLLEVQSQVEELQKSLQDQGSKAE 539

Query:   526 KIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEK 582
                 L+ +++   E+++    E  ++  +IE L+        +I++ +E  RK  E+
Sbjct:   540 DSVLLKKKLEEHLEKLHEANNELQKKRAIIEDLEPRFNNSSLKIEELQEALRKKEEE 596

GO:0008017 "microtubule binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

UNIPROTKB|E1B7Q0 HOOK3 "Protein Hook homolog 3" [Bos taurus (taxid:9913)]

 Score = 1191 (424.3 bits), Expect = 4.6e-121, P = 4.6e-121
 Identities = 253/590 (42%), Positives = 385/590 (65%)

Query:     7 DQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGA 66
             +++ELC  LL W+QTF + AP Q++ D+T+GV MAQ L +I P +F E WL +IKT++G 
Sbjct:     8 ERAELCESLLTWIQTFNVDAPCQTVEDLTNGVVMAQVLQKIDPAYFDENWLNRIKTEVG- 66

Query:    67 NNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCA 126
             +NWRLKISNLKKI +GI+DY  E   Q + +F   DV+ I E+ DA EL R++QLILGCA
Sbjct:    67 DNWRLKISNLKKILKGILDYNHEILGQQINDFTLPDVNLIAEHSDAAELGRMLQLILGCA 126

Query:   127 INCNRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLN---MSLDPQVQNLVAELQ 183
             +NC +KQ YI  IM +EESVQ V+M +IQEL +      + N   + LD Q++    EL 
Sbjct:   127 VNCEQKQEYIQAIMVMEESVQHVVMTAIQELMSKESPVSAGNDAYVDLDRQLKKTSEELN 186

Query:   184 TVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERF-QENFVE----PTNKGNSS 238
               + A++++AQRC ELD+QV+ LQEEKS L+ E + L ER  Q + +E    P  + +  
Sbjct:   187 EALSAKEEIAQRCHELDLQVAALQEEKSSLLVENQVLMERLNQSDSIEDPNSPAGRRHLQ 246

Query:   239 MRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDIL 298
             ++ Q++ L+EE F+ E+A+DDYRI+ E   K++ +L  + + L   A +A+ LKDE+D+L
Sbjct:   247 LQTQLEQLQEETFRLEAAKDDYRIRCEELEKEISELRQQNDELTTLADDAQSLKDEIDVL 306

Query:   299 RETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKS 358
             R +++KV K EG +E+YKKK E+L DL++QVK LE KN  Y+Q T+ LEEEL+K    +S
Sbjct:   307 RHSSDKVSKLEGQVESYKKKLEDLGDLRRQVKLLEEKNTMYMQNTVSLEEELRKANAARS 366

Query:   359 QVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEE 418
             Q++ YK+Q+ EL N+ +EE+K+ADK +FE K+L+EKV SLQ+EK++L  ERDSLKET EE
Sbjct:   367 QLETYKRQVVELQNRLSEESKKADKLDFEYKRLKEKVDSLQKEKDRLRSERDSLKETIEE 426

Query:   419 LKCCQLQQSK--SAELNTLG--ENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIE 474
             L+C Q Q+ +  +  L  LG  E+ D     +   E+R+KL+RL HEN ML++NQ+    
Sbjct:   427 LRCVQAQEGQLTTQGLMPLGSQESSDSLAAEIVTPEIREKLIRLQHENKMLKINQEGSDN 486

Query:   475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKE--RVTEDAAGMKVKIFELQN 532
              K+ ++ + LDD   +      ENR  NQR+LE++++++E  +  +D          L+ 
Sbjct:   487 EKIALLQSLLDDANLRKNELETENRLVNQRLLEVQSQVEELQKSLQDQGSKAEDSVLLKK 546

Query:   533 EIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEK 582
             +++   E+++    E  ++  +IE L+        +I++ +E  RK  E+
Sbjct:   547 KLEEHLEKLHEANNELQKKRAIIEDLEPRFNNSSLKIEELQEALRKKEEE 596

GO:0097150 "neuronal stem cell maintenance" evidence=IEA

GO:0071539 "protein localization to centrosome" evidence=IEA

GO:0070695 "FHF complex" evidence=IEA

GO:0051645 "Golgi localization" evidence=IEA

GO:0050768 "negative regulation of neurogenesis" evidence=IEA

GO:0045022 "early endosome to late endosome transport" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0034454 "microtubule anchoring at centrosome" evidence=IEA

GO:0034451 "centriolar satellite" evidence=IEA

GO:0031122 "cytoplasmic microtubule organization" evidence=IEA

GO:0030897 "HOPS complex" evidence=IEA

GO:0022027 "interkinetic nuclear migration" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0007040 "lysosome organization" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0000242 "pericentriolar material" evidence=IEA

MGI|MGI:2443554 Hook3 "hook homolog 3 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
 Identities = 254/597 (42%), Positives = 385/597 (64%)

Query:     1 MNNTQE-DQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAK 59
             M N +  ++ ELC  LL W+QTF + AP Q+  D+T+GV M+Q L +I P +F + WL +
Sbjct:     1 MFNVESVERVELCESLLTWIQTFNVDAPCQTAEDLTNGVVMSQVLQKIDPVYFDDNWLNR 60

Query:    60 IKTDIGANNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLM 119
             IKT++G +NWRLKISNLKKI +GI+DY  E   Q + +F   DV+ I E+ DA EL R++
Sbjct:    61 IKTEVG-DNWRLKISNLKKILKGILDYNHEILGQQINDFTLPDVNLIGEHSDAAELGRML 119

Query:   120 QLILGCAINCNRKQNYITKIMELEESVQQVIMQSIQEL---ENLHGSTHSLNMSLDPQVQ 176
             QLILGCA+NC +KQ YI  IM +EESVQ V+M +IQEL   E+   + H   + LD Q++
Sbjct:   120 QLILGCAVNCEQKQEYIQAIMMMEESVQHVVMTAIQELMSKESPVSAGHDAYVDLDRQLK 179

Query:   177 NLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERF-QENFVE----P 231
                 EL   + A++++AQRC ELDMQV+ LQEEKS L+ E + L ER  Q + +E    P
Sbjct:   180 KTTEELNEALSAKEEIAQRCHELDMQVAALQEEKSSLLAENQILMERLNQSDSIEDPNSP 239

Query:   232 TNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYL 291
               + +  ++ Q++ L+EE F+ E+A+DDYRI+ E   K++ +L  + + L   A EA+ L
Sbjct:   240 AGRRHLQLQTQLEQLQEETFRLEAAKDDYRIRCEELEKEISELRQQNDELTTLADEAQSL 299

Query:   292 KDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELK 351
             KDE+D+LR +++KV K EG +E+YKKK E+L DL++QVK LE KN  Y+Q T+ LEEEL+
Sbjct:   300 KDEIDVLRHSSDKVSKLEGQVESYKKKLEDLGDLRRQVKLLEEKNTMYMQNTVSLEEELR 359

Query:   352 KNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDS 411
             K    + Q++ YK+Q+ EL N+ ++E+K+ADK +FE K+L+EKV  LQ+EK++L  ERDS
Sbjct:   360 KANAARGQLETYKRQVVELQNRLSDESKKADKLDFEYKRLKEKVDGLQKEKDRLRTERDS 419

Query:   412 LKETNEELKCCQLQQSK--SAELNTLG--ENLDLSEDSVPITELRQKLVRLTHENNMLQM 467
             LKET EEL+C Q Q+ +  +  L  LG  E+ D     +   E+R+KL+RL HEN ML++
Sbjct:   420 LKETIEELRCVQAQEGQLTTQGLMPLGSQESSDSLAAEIVTPEIREKLIRLQHENKMLKL 479

Query:   468 NQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKE--RVTEDAAGMKV 525
             NQ+D    K+ ++ + LDD   +      ENR  NQR+LE++++++E  +  +D      
Sbjct:   480 NQEDSDNEKIALLQSLLDDANLRKNELETENRLVNQRLLEVQSQVEELQKSLQDQGSKAE 539

Query:   526 KIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEK 582
                 L+ +++   E+++    E  ++  +IE L+         I++ +E  RK  E+
Sbjct:   540 DSVLLKKKLEEHLEKLHEANNELQKKRAIIEDLEPRFNNSSLRIEELQEALRKKEEE 596

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0000242 "pericentriolar material" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=ISO

GO:0005813 "centrosome" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007032 "endosome organization" evidence=ISO

GO:0007040 "lysosome organization" evidence=ISO

GO:0008017 "microtubule binding" evidence=ISO

GO:0008333 "endosome to lysosome transport" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0022027 "interkinetic nuclear migration" evidence=IMP

GO:0031122 "cytoplasmic microtubule organization" evidence=ISO

GO:0034451 "centriolar satellite" evidence=IDA

GO:0034454 "microtubule anchoring at centrosome" evidence=IMP

GO:0042802 "identical protein binding" evidence=ISO

GO:0045022 "early endosome to late endosome transport" evidence=ISO

GO:0050768 "negative regulation of neurogenesis" evidence=IMP

GO:0051645 "Golgi localization" evidence=ISO

GO:0070695 "FHF complex" evidence=ISO

GO:0071539 "protein localization to centrosome" evidence=IMP

GO:0097150 "neuronal stem cell maintenance" evidence=IMP

UNIPROTKB|F1MA65 Hook3 "Protein Hook3" [Rattus norvegicus (taxid:10116)]

 Score = 1122 (400.0 bits), Expect = 9.4e-114, P = 9.4e-114
 Identities = 238/555 (42%), Positives = 363/555 (65%)

Query:    19 LQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKK 78
             +QTF +  P Q++ D+T+GV M+Q L +I P +F + WL +IKT++G +NWRLKISNLKK
Sbjct:     1 IQTFNVDTPCQTVEDLTNGVVMSQVLQKIDPAYFDDNWLNRIKTEVG-DNWRLKISNLKK 59

Query:    79 INEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCNRKQNYITK 138
             I +GI+DY  E   Q + +F   DV+ I E+ DA EL R++QLILGCA+NC +KQ YI  
Sbjct:    60 ILKGILDYNHEILGQQINDFTLPDVNLIGEHSDAAELGRMLQLILGCAVNCEQKQEYIQA 119

Query:   139 IMELEESVQQVIMQSIQELENLHGSTHSLN---MSLDPQVQNLVAELQTVIDARDQMAQR 195
             IM +EESVQ V+M +IQEL +      + N   + LD Q++    EL   + A++++AQR
Sbjct:   120 IMMMEESVQHVVMTAIQELMSKESPVSAGNDAYVDLDRQLKKTTEELNEALSAKEEIAQR 179

Query:   196 CMELDMQVSMLQEEKSCLVEEKRRLEERF-QENFVE----PTNKGNSSMRRQMDALKEEL 250
             C ELDMQV+ LQEEKS L+ E + L ER  Q + +E    P  + +  ++ Q++ L+EE 
Sbjct:   180 CHELDMQVAALQEEKSSLLAENQILMERLNQSDSIEDPNSPAGRRHLQLQTQLEQLQEET 239

Query:   251 FKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEG 310
             F+ E+A+DDYRI+ E   K++ +L  + + L   A EA+ LKDE+D+LR +++KV K EG
Sbjct:   240 FRLEAAKDDYRIRCEELEKEISELRQQNDELTTLADEAQSLKDEIDVLRHSSDKVSKLEG 299

Query:   311 IIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSEL 370
              +E+YKKK E+L DL++QVK LE KN  Y+Q T+ LEEEL+K    + Q++ YK+Q+ EL
Sbjct:   300 QVESYKKKLEDLGDLRRQVKLLEEKNTMYMQNTVSLEEELRKANAARGQLETYKRQVVEL 359

Query:   371 YNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSK-- 428
              N+ ++E+K+ADK +FE K+L+EKV  LQ+EK++L  ERDSLKET EEL+C Q Q+ +  
Sbjct:   360 QNRLSDESKKADKLDFEYKRLKEKVDGLQKEKDRLRTERDSLKETIEELRCVQAQEGQLT 419

Query:   429 SAELNTLG--ENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDD 486
             +  L  LG  E+ D     +   E+R+KL+RL HEN ML++NQ+     K+ ++ + LDD
Sbjct:   420 TQGLMPLGSQESSDSLAAEIVTPEIREKLIRLQHENKMLKINQEGSDNEKIALLQSLLDD 479

Query:   487 VTQQVKMKTLENRKANQRILELEAELKE--RVTEDAAGMKVKIFELQNEIKNLKEQINHQ 544
                +      ENR  NQR+LE++++++E  +  +D          L+ +++   E+++  
Sbjct:   480 ANLRKNELETENRLVNQRLLEVQSQVEELQKSLQDQGSKAEDSVLLKKKLEEHLEKLHEA 539

Query:   545 QEEHLEQGKLIEKLQ 559
               E  ++  +IE L+
Sbjct:   540 NNELQKKRAIIEDLE 554

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

ZFIN|ZDB-GENE-041001-159 hook1 "hook homolog 1" [Danio rerio (taxid:7955)]

 Score = 1107 (394.7 bits), Expect = 3.6e-112, P = 3.6e-112
 Identities = 237/575 (41%), Positives = 371/575 (64%)

Query:    11 LCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWR 70
             LC  L+ WLQTF   AP +++ D+T G AM+QALHQI P WFSE WLA+IK D+G +N R
Sbjct:     8 LCESLIIWLQTFKTAAPCKTVEDLTSGAAMSQALHQIDPSWFSESWLARIKEDVG-DNVR 66

Query:    71 LKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCN 130
             LK++NLKKI + IVDY+ E   Q + +F   D+ ++VE  D  EL RL+QLILGCA+ C+
Sbjct:    67 LKMNNLKKILQMIVDYYNEVLAQQMSDFPLPDLMRVVEQSDQVELGRLLQLILGCAVKCD 126

Query:   131 RKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMS----LDPQVQNLVAELQTVI 186
             RKQ YI  IM LEESVQ V+M +IQEL +   S   L        + Q++  + +L  V+
Sbjct:   127 RKQEYIQIIMTLEESVQHVVMTAIQELMSRE-SVSQLGAEPAGDTEQQLKKALEDLTEVM 185

Query:   187 DARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQ--ENFVEP-TNKG--NSSMRR 241
               ++++AQRC ELDMQV++LQEE++ L+ E   L +R    E F +P T  G  +S ++ 
Sbjct:   186 AEKEELAQRCQELDMQVTVLQEERNSLLAENDLLTDRSSQLETFDDPSTPSGRKHSQLQF 245

Query:   242 QMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRET 301
             Q++ L+EE F+ E+A+DDYRI  E   KQ+ +L+ + + L   A E+R LKDE+DILR  
Sbjct:   246 QLEQLQEENFRLEAAKDDYRIHCEELEKQLVELQHRNDELTSLAEESRSLKDELDILRSC 305

Query:   302 AEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVD 361
             +++  K E  +ETY+KK E+L DL++Q+K LE KN++Y+  T+ LEEEL+K    ++Q++
Sbjct:   306 SDRAVKLEASVETYRKKLEDLSDLRRQMKALEEKNMTYMHNTVSLEEELRKANAARAQLE 365

Query:   362 MYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKC 421
              YK+Q+ EL+ + ++E++RAD   FE KKLQEK  +L +E+E++ +ERD+L+ETNEEL+C
Sbjct:   366 TYKRQVQELHKKLSDESRRADNLVFEMKKLQEKYDALVKERERISIERDTLRETNEELRC 425

Query:   422 CQLQQSK---SAELNTLGENLD-LSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKL 477
              Q QQ +   + +  T   + D L+ + +PI E R+K +RL HEN ML++ Q++  + ++
Sbjct:   426 TQAQQDQLLLAGKYQTGSPSHDNLAAEMLPI-EYREKFIRLQHENKMLRLQQEESEKQRI 484

Query:   478 NIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKE-RVTEDAAGMKVKIFELQNEIKN 536
               +  +L++  +       +NR   +RI EL+ ++++ +      G K     L+ ++  
Sbjct:   485 TELQQQLEEARRGRSQLDTDNRLNRERISELQQQVEDLQKALQTQGAKPDDSHLKRKLDA 544

Query:   537 LKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQD 571
                Q+N  Q+E +++ +L+E LQ   TQ   ++ +
Sbjct:   545 HMVQLNEAQDEIMKKKELLEDLQPDATQTSVKMDE 579

GO:0005737 "cytoplasm" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0007032 "endosome organization" evidence=ISS

GO:0008333 "endosome to lysosome transport" evidence=ISS

GO:0045022 "early endosome to late endosome transport" evidence=ISS

GO:0070695 "FHF complex" evidence=ISS

GO:0007040 "lysosome organization" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|F6Y057 HOOK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
 Identities = 242/618 (39%), Positives = 382/618 (61%)

Query:     1 MNNTQE-DQSEL--CNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWL 57
             M  TQ   Q+EL  C+ L  WLQTF   AP Q +  +T+GVAMAQ LHQI   WF+E WL
Sbjct:     1 MEETQPLPQTELPLCDSLFIWLQTFNTAAPCQDVKQLTNGVAMAQVLHQIDVAWFNESWL 60

Query:    58 AKIKTDIGANNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELAR 117
             ++IK DIG +NWR+K SNLKK+ +GI+ Y+ E+  Q + E    D+++I E+ D+ EL R
Sbjct:    61 SRIKEDIG-DNWRIKASNLKKVLQGIMSYYNEFLGQQISEELIPDLNQITESSDSVELGR 119

Query:   118 LMQLILGCAINCNRKQNYITKIMELEESVQQVIMQSIQEL---ENLHGSTHSLNMSLDPQ 174
             L+QLILGCA+NC +KQ +I  IM LEESVQ V+M +IQEL   E L+  T+     L+ Q
Sbjct:   120 LLQLILGCAVNCEKKQEHIQNIMTLEESVQHVVMTAIQELMSKEILNSPTNDTVGELEQQ 179

Query:   175 VQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQE---NFVEP 231
             ++  + ELQ  +  ++++ QRC ELDMQV+ LQ+EK+ LV E   + E+  +   +F +P
Sbjct:   180 LKRALEELQEALAEKEELRQRCQELDMQVTALQDEKNSLVSENEMMNEKLDQLDGSFDDP 239

Query:   232 TN---KGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEA 288
                  K     + Q++ L+EE F+ E+A+DDYR+  E   KQ+ + + + + L   A E 
Sbjct:   240 NTMVAKKYFHAQLQLEQLQEENFRLEAAKDDYRVHCEELEKQLIEFQHRNDELTSLAEET 299

Query:   289 RYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEE 348
             R LKDE+D+LR T++K  K E  +E Y++K ++L DL+KQVK L+  N+ Y+  T+ LEE
Sbjct:   300 RALKDEIDVLRATSDKANKLESTVEIYRQKLQDLNDLRKQVKTLQETNMMYMHNTVSLEE 359

Query:   349 ELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVE 408
             ELKK    ++Q++ YK+Q+ +L+N+ + E+KRAD   FE K+L+EK  +L +EKE+LI +
Sbjct:   360 ELKKANAARTQLETYKRQVQDLHNKLSSESKRADTLAFEMKRLEEKHEALLKEKERLIEQ 419

Query:   409 RDSLKETNEELKCCQLQQS--KSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQ 466
             RD+LKETNEEL+C Q+QQ      + +      +L+ + +P+ E R+  +RL HEN ML+
Sbjct:   420 RDTLKETNEELRCSQVQQDHLNQTDASATKSYENLAAEIMPV-EYREVFIRLQHENKMLR 478

Query:   467 MNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKE-RVTEDAAGMKV 525
             + Q+     ++  +  +L+   +++     E R + +RI EL+ ++++ + +    G K 
Sbjct:   479 LQQEGTENERIEELQEQLEQKHRKMNELETEQRLSKERIRELQQQIEDLQKSLQEQGSKS 538

Query:   526 K---IFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIE- 581
             +     +L+ +++   E++   QEE  ++ +LIE LQ  + Q   +I + E   +K  E 
Sbjct:   539 EGESSSKLKQKLEAHMEKLTEVQEELQKKQELIEDLQPDVNQNAQKINELEAALQKKDED 598

Query:   582 -KA-NSAFKLLDPTVQNV 597
              KA    +K+     +NV
Sbjct:   599 MKAMEERYKMYLEKARNV 616

GO:0008017 "microtubule binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

UNIPROTKB|F1NJ60 HOOK1 "Protein Hook homolog 1" [Gallus gallus (taxid:9031)]

 Score = 1092 (389.5 bits), Expect = 1.4e-110, P = 1.4e-110
 Identities = 238/603 (39%), Positives = 374/603 (62%)

Query:    11 LCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWR 70
             LC+ L+ WLQTF   AP +++ D+T+GVAMAQ LHQI   WF   WL +IK D+G +NWR
Sbjct:    10 LCDSLILWLQTFNTAAPCRNVQDLTNGVAMAQVLHQIDVAWFDASWLNRIKEDVG-DNWR 68

Query:    71 LKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCN 130
             +K SNLKKI +GI+DY+ E+ DQ + E    D++KI EN D  EL RLMQLILGCA+NC 
Sbjct:    69 IKSSNLKKILQGIMDYYHEFLDQQISEELIPDLNKISENSDPTELGRLMQLILGCAVNCE 128

Query:   131 RKQNYITKIMELEESVQQVIMQSIQEL---ENLHGSTHSLNMSLDPQVQNLVAELQTVID 187
             RKQ +I  IM LEESVQ V+M +IQEL   E +  S   ++  ++ Q++  + +LQ  I 
Sbjct:   129 RKQEHIQNIMTLEESVQHVVMTAIQELMSKEAMGPSASDVSSEMEQQLKKALEDLQEAIA 188

Query:   188 ARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQE---NFVEPTN---KGNSSMRR 241
              ++++AQRC ELD+QV+ LQ+EK+ LV E   L +R ++   +  +P     K     + 
Sbjct:   189 EKEELAQRCQELDLQVAALQDEKNSLVSENEILNDRLEQLDDSLDDPNTVVAKKYFHAQL 248

Query:   242 QMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRET 301
             Q++ L+EE F+ E+A+DDYR+  E   KQ+ +L+ + N L   A E+R LKDE DILR T
Sbjct:   249 QLEQLQEENFRLEAAKDDYRVHCEDLEKQLIELQHRNNDLTSLAEESRALKDENDILRAT 308

Query:   302 AEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVD 361
             A+K  K E  +E Y+KK ++L D ++QVK L+  N+ Y+  T+ LE+EL+K    ++Q++
Sbjct:   309 ADKASKLESTVEVYRKKLQDLNDFRRQVKSLQETNMMYMHNTVSLEDELRKANAARAQLE 368

Query:   362 MYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKC 421
              YK+Q+ EL+N+ +EE+KRADK  FE K+L+EK  +L +EKE+L+++ D+LKETNEEL+ 
Sbjct:   369 TYKRQVQELHNKLSEESKRADKLAFEMKRLEEKHEALVKEKERLVIQCDALKETNEELRY 428

Query:   422 CQLQQS--KSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNI 479
              Q+QQ      + + +  + +L+ + +P+ E R+  ++L HEN ML + Q+     ++  
Sbjct:   429 SQMQQDHLSRTDASRIKSHDNLAAELLPV-EYREMFIQLQHENKMLLLQQEGSENERITE 487

Query:   480 VNAKLDDVTQQVKMKTLENRKANQRILELEAELKE-RVTEDAAGMKVK-IFELQNEIKNL 537
             +  +L+     V     E R   +RI EL+ ++++ + T    G K +    L+ ++   
Sbjct:   488 LQKQLEQKQWTVNELETEKRLNKERIGELQQQIEDLQKTLQEQGSKTEGSSNLKQKLAAH 547

Query:   538 KEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIE--KA-NSAFKLLDPTV 594
              E+++   +E  ++   + +LQ  ++Q   +I + E   RK  E  KA    +K+     
Sbjct:   548 MEKLSEVHDELQKKEAALAELQPDVSQNPQKIGELEAALRKKDEDMKAMEERYKMYLEKA 607

Query:   595 QNV 597
             +NV
Sbjct:   608 RNV 610

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0007040 "lysosome organization" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IEA

GO:0030897 "HOPS complex" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0045022 "early endosome to late endosome transport" evidence=IEA

GO:0070695 "FHF complex" evidence=IEA

UNIPROTKB|Q5ZJ27 HOOK1 "Protein Hook homolog 1" [Gallus gallus (taxid:9031)]

 Score = 1080 (385.2 bits), Expect = 2.6e-109, P = 2.6e-109
 Identities = 236/603 (39%), Positives = 373/603 (61%)

Query:    11 LCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWR 70
             LC+ L+ WLQTF   AP +++ D+T+GVAMAQ LHQI   WF   WL +IK D+G +NWR
Sbjct:    10 LCDSLILWLQTFNTAAPCRNVQDLTNGVAMAQVLHQIDVAWFDASWLNRIKEDVG-DNWR 68

Query:    71 LKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCN 130
             +K SNLKKI +GI+DY+ E+ DQ + E    D++KI EN D  EL RLMQLILGCA+NC 
Sbjct:    69 IKSSNLKKILQGIMDYYHEFLDQQISEELIPDLNKISENSDPTELGRLMQLILGCAVNCE 128

Query:   131 RKQNYITKIMELEESVQQVIMQSIQEL---ENLHGSTHSLNMSLDPQVQNLVAELQTVID 187
             RKQ +I  IM LEESVQ V+M +IQEL   E +  S   ++  ++ Q++  + +LQ  I 
Sbjct:   129 RKQEHIQNIMTLEESVQHVVMTAIQELMSKEAMGPSASDVSSEMEQQLKKALEDLQEAIA 188

Query:   188 ARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQE---NFVEPTN---KGNSSMRR 241
              ++++AQRC ELD+QV+ LQ+EK+ LV E   L +R ++   +  +P     K     + 
Sbjct:   189 EKEELAQRCQELDLQVAALQDEKNSLVSENEILNDRLEQLDDSLDDPNTVVAKKYFHAQL 248

Query:   242 QMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRET 301
             Q++ L+EE F+ E+A+DDYR+  E   KQ+ +L+ + N L   A E+R LKDE DILR  
Sbjct:   249 QLEQLQEENFRLEAAKDDYRVHCEDLEKQLIELQHRNNELTSLAEESRALKDENDILRAA 308

Query:   302 AEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVD 361
             A+K  K E  +E Y+KK ++L D ++QVK L+  N+ Y+  T+ LE+EL++    ++Q++
Sbjct:   309 ADKASKLESTVEVYRKKLQDLNDFRRQVKSLQETNMMYMHNTVSLEDELREANAARAQLE 368

Query:   362 MYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKC 421
              YK+Q+ EL+N+ +EE+KRADK  FE K+L+EK  +L +EKE+L+++ D+LKETNEEL+ 
Sbjct:   369 TYKRQVQELHNKLSEESKRADKLAFEMKRLEEKHEALVKEKERLVIQCDALKETNEELRY 428

Query:   422 CQLQQS--KSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNI 479
              Q+QQ      + + +  + +L+ + +P+ E R+  ++L HEN ML + Q+     ++  
Sbjct:   429 SQMQQDHLSRTDASRIKSHDNLAAELLPV-EYREMFIQLQHENKMLLLQQEGSENERIME 487

Query:   480 VNAKLDDVTQQVKMKTLENRKANQRILELEAELKE-RVTEDAAGMKVK-IFELQNEIKNL 537
             +  +L+     V     E R   +RI EL+ ++++ + T    G K +    L+ ++   
Sbjct:   488 LQKQLEQKQWTVNELGTEKRLNKERIGELQQQIEDLQKTLQEQGSKTEGSSNLKQKLAAH 547

Query:   538 KEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIE--KA-NSAFKLLDPTV 594
              E+++   +E  ++   + +LQ  ++Q   +I + E   RK  E  KA    +K+     
Sbjct:   548 MEKLSEVHDELQKKEAALAELQPDVSQNPQKIGELEAALRKKDEDMKAMEERYKMYLEKA 607

Query:   595 QNV 597
             +NV
Sbjct:   608 RNV 610

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007032 "endosome organization" evidence=ISS

GO:0007040 "lysosome organization" evidence=ISS

GO:0008333 "endosome to lysosome transport" evidence=ISS

GO:0045022 "early endosome to late endosome transport" evidence=ISS

GO:0070695 "FHF complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B6MFW3	HOOK_BRAFL	No assigned EC number	0.4170	0.9678	0.9156	yes	N/A
Q24185	HOOK_DROME	No assigned EC number	0.3537	0.9269	0.9337	yes	N/A
Q86VS8	HOOK3_HUMAN	No assigned EC number	0.4299	0.9824	0.9359	yes	N/A
Q8BUK6	HOOK3_MOUSE	No assigned EC number	0.4275	0.9780	0.9317	yes	N/A
Q5TZ80	HOOK1_DANRE	No assigned EC number	0.3924	0.9751	0.9328	yes	N/A
Q7PWT9	HOOK_ANOGA	No assigned EC number	0.3675	0.9429	0.9347	yes	N/A
Q29N92	HOOK_DROPS	No assigned EC number	0.3508	0.9239	0.9335	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	684
pfam05622	713	pfam05622, HOOK, HOOK protein	1e-173
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-08
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-08
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-07
PRK01156	895	PRK01156, PRK01156, chromosome segregation protein	6e-07
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-07
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	7e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-04
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	2e-04
PRK01156	895	PRK01156, PRK01156, chromosome segregation protein	4e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	8e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.001
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	0.001
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003

>gnl|CDD|218661 pfam05622, HOOK, HOOK protein

 Score =  510 bits (1316), Expect = e-173
 Identities = 299/705 (42%), Positives = 449/705 (63%), Gaps = 40/705 (5%)

Query: 7   DQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGA 66
           D+ ELC  LL WLQTF L AP  ++ D+TDGVAMAQ L+QI PEWF+E WL++IK D+G 
Sbjct: 4   DKMELCESLLTWLQTFNLSAPCATVEDLTDGVAMAQVLNQIDPEWFNESWLSRIKEDVGD 63

Query: 67  NNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCA 126
           N WRLK+SNLKKI +GI DY+Q+   Q L EF   D++ I E  D  EL RL+QLILGCA
Sbjct: 64  N-WRLKVSNLKKILQGIYDYYQDVLGQQLSEFLLPDLNLIAEKSDPAELGRLLQLILGCA 122

Query: 127 INCNRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMS---LDPQVQNLVAELQ 183
           +NC  KQ YI +IM LEESVQ V+M +IQEL +    +     S   LD Q++  + +L+
Sbjct: 123 VNCEEKQEYIQQIMTLEESVQHVVMTAIQELMSKEQGSSPSRESAGNLDQQLKKALEDLK 182

Query: 184 TVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQ------ENFVEPTNKGNS 237
              + +D++AQRC ELD QV +LQEEK+ L +E  +L+ER            +  +K  +
Sbjct: 183 EAQEEKDELAQRCHELDKQVLLLQEEKNSLQQENEKLQERLAQLEGSSLGPNQLGSKKYN 242

Query: 238 SMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDI 297
            ++ Q++ L+EE F+ E+ARDDYRIK E   K++ +L+ + + L   A E++ LKDE+D+
Sbjct: 243 LLQSQLEQLQEENFRLEAARDDYRIKCEELEKELAELQHRNDELTSLAAESQALKDEIDV 302

Query: 298 LRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWK 357
           LRE+++K +K E  +ETYKKK E+L DL++QVK LE +N  Y+Q T+ LEEELKK    +
Sbjct: 303 LRESSDKAKKLEAQVETYKKKLEDLNDLRRQVKLLEERNAMYMQNTVQLEEELKKANAAR 362

Query: 358 SQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNE 417
            Q++ YK+Q+ EL+ + +EE+K+ADK EFE K+L+EK+ +LQ+EKE+L+ ERDSL+ETNE
Sbjct: 363 GQLETYKRQVQELHAKLSEESKKADKLEFEYKRLEEKLEALQKEKERLLAERDSLRETNE 422

Query: 418 ELKCCQLQQSK--SAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEG 475
           EL+C Q QQ +   A+  T     +L+ + +P  E R+KL+RL HEN ML++ Q+     
Sbjct: 423 ELRCGQAQQDQLTQADAGTSPSGDNLAAELLPS-EYREKLIRLQHENKMLRLGQEGSENE 481

Query: 476 KLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERV---------TEDAAGMK-- 524
           ++  +   L+D  ++      + R ANQRILEL+ ++++           +ED++ +K  
Sbjct: 482 RITELQQLLEDANRRNNELETQLRLANQRILELQQQVEDLQKALQEQGSKSEDSSLLKSK 541

Query: 525 -----VKIFELQNEIKNLKEQINHQQEEHLEQGKL-IEKLQDSITQKDSEIQDYEEKNRK 578
                 ++ E   E++  +EQI   + +  +     I +L+ ++ +KD +++  EE+ +K
Sbjct: 542 LEEHLEQLHEANEELQKKREQIEELEPDQDQNLSRKIAELEAALQKKDEDMRAMEERYKK 601

Query: 579 YIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKK----EQQEKLI 634
           Y+EKA    K LDP      A  E++ L+K+  ++DK +  LE   EK     EQ+EKLI
Sbjct: 602 YVEKAREVIKTLDPKQNP--ASPEIQLLKKQLTERDKRIRHLESEYEKAKPMREQEEKLI 659

Query: 635 ATAFYNLALQKQRQTADNRLASITFSQQPQSFLTKQRQA--SRRN 677
            +A+YNL +  Q++  ++RLA +      QSFL +QRQA  +RR 
Sbjct: 660 VSAWYNLGMALQKEAIESRLAGLGGPG--QSFLAQQRQATNARRG 702

This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. Length = 713

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 63.5 bits (155), Expect = 2e-10
 Identities = 78/387 (20%), Positives = 175/387 (45%), Gaps = 41/387 (10%)

Query: 252  KAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEAR-----YLKDEVDILRETAEKVE 306
            K  S+  + R ++E   +++E+LE K+  LE+   E R       ++   + +E  E   
Sbjct: 667  KTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726

Query: 307  KYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQ 366
            +   + +   +   E+  L++++ QL  +      +  +LEE L++     ++ +   ++
Sbjct: 727  QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE 786

Query: 367  MSELYNQFNEETK--RADKSEFENKK--LQEKVTSLQREKEKLIVERDSLKETNEELKCC 422
            +     Q  EE K  R    E   +   L E+  +L+   E L     + +   E+L+  
Sbjct: 787  LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLE-- 844

Query: 423  QLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNA 482
              +Q +    +      ++ E    I EL  +L  L         N++  +E  L ++ +
Sbjct: 845  --EQIEELSEDIESLAAEIEELEELIEELESELEALL--------NERASLEEALALLRS 894

Query: 483  KLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQIN 542
            +L+++++++       R+   +  EL  EL+E   + A  +++++  L+  I NL+E+++
Sbjct: 895  ELEELSEEL-------RELESKRSELRRELEELREKLAQ-LELRLEGLEVRIDNLQERLS 946

Query: 543  HQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNE 602
                   E+  L     +     +++I+D EE+ R+ +++  +  K L P   N+AA+ E
Sbjct: 947  -------EEYSL---TLEEAEALENKIEDDEEEARRRLKRLENKIKELGPV--NLAAIEE 994

Query: 603  LKNLRKKNDDKDKMLDDLEKTLEKKEQ 629
             + L+++ D      +DL +  E  E+
Sbjct: 995  YEELKERYDFLTAQKEDLTEAKETLEE 1021

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 60.5 bits (147), Expect = 2e-09
 Identities = 87/397 (21%), Positives = 174/397 (43%), Gaps = 60/397 (15%)

Query: 235 GNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDE 294
           G S  +R   A K EL + E    +   +LE   ++++ L+ +L SLE+   E R     
Sbjct: 654 GGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELR----- 708

Query: 295 VDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNG 354
                                              +QLE       +   +L    ++  
Sbjct: 709 -----------------------------------RQLEELERQLEELKRELAALEEELE 733

Query: 355 NWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKE 414
             +S+++  ++++ EL  +  E  +R ++ E E + L+E +  L+ E E+L  +R +L+E
Sbjct: 734 QLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQE 793

Query: 415 TNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIE 474
             EEL           EL        L      +  L Q+  RL  E   L+  + +++E
Sbjct: 794 ELEEL---------EEELEEA--ERRLDALERELESLEQRRERLEQEIEELE-EEIEELE 841

Query: 475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEI 534
            KL+ +  +L+++ ++++    E  +      ELE ELKE + E+   ++ ++ EL++E+
Sbjct: 842 EKLDELEEELEELEKELEELKEELEELEAEKEELEDELKE-LEEEKEELEEELRELESEL 900

Query: 535 KNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKN-----RKYIEKANSAFKL 589
             LKE+I   +E   E    +E+L+  + + + E+++  E        + IE+     + 
Sbjct: 901 AELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEA 960

Query: 590 LDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEK 626
           L P   N+ A+ E + + ++ ++     +DLE+  EK
Sbjct: 961 LGPV--NLRAIEEYEEVEERYEELKSQREDLEEAKEK 995

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 59.7 bits (145), Expect = 5e-09
 Identities = 79/350 (22%), Positives = 170/350 (48%), Gaps = 14/350 (4%)

Query: 240  RRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILR 299
              ++ +LK EL   E   ++ R +LE   +Q+E+L+ +L +LEE     +      ++  
Sbjct: 687  EEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEE--LEQLQSRLEELEE 744

Query: 300  ETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQ 359
            E  E  E+ E + E  ++  EEL  L++ + +L+ +     ++   L+EEL+     + +
Sbjct: 745  ELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELE---ELEEE 801

Query: 360  VDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEEL 419
            ++  ++++  L  +     +R ++ E E ++L+E++  L+ + ++L  E + L++  EEL
Sbjct: 802  LEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEEL 861

Query: 420  KCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNI 479
            K  +L++ + AE   L + L   E+     EL ++L  L  E   L+  + + +  +L  
Sbjct: 862  K-EELEELE-AEKEELEDELKELEEE--KEELEEELRELESELAELK-EEIEKLRERLEE 916

Query: 480  VNAKLDDVTQQVKMKTLENRKANQRILELEAELK-ERVTEDAAGMKVKIFELQNEIKNLK 538
            + AKL+ +  ++     E  +  +  LE E E + ER+ E+   +         E + ++
Sbjct: 917  LEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVE 976

Query: 539  EQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFK 588
            E+    + +  +  +  EKL + I + D E     E+ ++  +K N  F 
Sbjct: 977  ERYEELKSQREDLEEAKEKLLEVIEELDKEK---RERFKETFDKINENFS 1023

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 58.1 bits (141), Expect = 1e-08
 Identities = 60/286 (20%), Positives = 130/286 (45%), Gaps = 21/286 (7%)

Query: 383 KSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLS 442
           K+E    +L   V  L+  +E+L   ++ LKE  EEL+        +AEL  L E L+  
Sbjct: 219 KAELRELELALLVLRLEELREELEELQEELKEAEEELE------ELTAELQELEEKLEEL 272

Query: 443 EDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKAN 502
              V   EL +++  L  E   L  N+   +E +  I+  +L ++ +Q++    +  +  
Sbjct: 273 RLEVS--ELEEEIEELQKELYALA-NEISRLEQQKQILRERLANLERQLEELEAQLEELE 329

Query: 503 QRILELEAEL------KERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIE 556
            ++ EL  EL       E + E+   ++ ++ EL+ E++ L+ ++   +E+       + 
Sbjct: 330 SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389

Query: 557 KLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKM 616
           +L+  I   ++EI+  E +  + +E      +     +       ELK L+ + ++ ++ 
Sbjct: 390 QLELQIASLNNEIERLEAR-LERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE 448

Query: 617 LDDLEKTLEKKEQQEKLIATAFYNL-----ALQKQRQTADNRLASI 657
           L++L++ LE+ E+  + +            A +++      RL S+
Sbjct: 449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL 494

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.8 bits (140), Expect = 1e-08
 Identities = 81/393 (20%), Positives = 183/393 (46%), Gaps = 35/393 (8%)

Query: 266 IQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDL 325
           I +K  E  +L    +EE AG ++Y + + +  R+     E  E + +  ++  ++L  L
Sbjct: 150 INAKPEERRKL----IEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKL 205

Query: 326 KKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSE 385
           ++Q ++ E        +  +L+ EL++      ++ +   ++ EL  +  E  +   + E
Sbjct: 206 ERQAEKAE--------RYQELKAELRE-----LELALLLAKLKELRKELEELEEELSRLE 252

Query: 386 FENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQ-----QSKSAELNTLGENLD 440
            E ++LQE++   ++E E+L  E + L+E  EEL+   L+     +    E++ L E L+
Sbjct: 253 EELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLE 312

Query: 441 LSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRK 500
             E+   + EL ++L  L  +   L+  + ++ E  L  +   L ++ +  +    E  +
Sbjct: 313 ELENE--LEELEERLEELKEKIEALK-EELEERETLLEELEQLLAELEEAKE----ELEE 365

Query: 501 ANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQD 560
               +LE   EL E + E+ A ++ ++ E++NE++ LK +I   +E      + +E L++
Sbjct: 366 KLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKE 425

Query: 561 SITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDL 620
            + + ++E+++ + +    +E+ N   + L+  ++     + LK L ++  +  + L  L
Sbjct: 426 ELKELEAELEELQTE----LEELNEELEELEEQLEE--LRDRLKELERELAELQEELQRL 479

Query: 621 EKTLEKKEQQEKLIATAFYNLALQKQRQTADNR 653
           EK L   E +   +          +    A   
Sbjct: 480 EKELSSLEARLDRLEAEQRASQGVRAVLEALES 512

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.4 bits (139), Expect = 2e-08
 Identities = 76/343 (22%), Positives = 156/343 (45%), Gaps = 36/343 (10%)

Query: 246 LKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLE---ETAGEARYLKDEVDILRETA 302
            KE   +AE   +     LE     +E+LE +L  LE   E A   + LK E+  L    
Sbjct: 170 YKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELAL 229

Query: 303 ------EKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNW 356
                 E  ++ E + E   +  EEL +L++++++ E +    I++     EEL++    
Sbjct: 230 LLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKE----IEELKSELEELREELEE 285

Query: 357 KSQVDM-YKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKL---IVERDSL 412
             +  +  K+++ EL  + +   +R ++ E E ++L+E++  L+ + E L   + ER++L
Sbjct: 286 LQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETL 345

Query: 413 KETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDD 472
            E  E+L      +    EL      L    + +    LR++L  L          +  +
Sbjct: 346 LEELEQLLA--ELEEAKEELEEKLSALLEELEEL-FEALREELAEL--------EAELAE 394

Query: 473 IEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQN 532
           I  +L  +  +++ + ++++  +       + + ELEAEL+E  TE          EL  
Sbjct: 395 IRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELE--------ELNE 446

Query: 533 EIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEK 575
           E++ L+EQ+   ++   E  + + +LQ+ + + + E+   E +
Sbjct: 447 ELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEAR 489

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 57.8 bits (140), Expect = 2e-08
 Identities = 105/507 (20%), Positives = 238/507 (46%), Gaps = 39/507 (7%)

Query: 130 NRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDAR 189
            R+   + K ++  E+++++I +  +ELE +    + +  S  P+++  + +L+  +   
Sbjct: 175 KRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEI-SSELPELREELEKLEKEVKEL 233

Query: 190 DQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALK-- 247
           +++ +   EL+ ++  L+  K  L E+ R LEER +E  ++   +      +++  LK  
Sbjct: 234 EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEE--LKKEIEELEEKVKELKELKEK 291

Query: 248 -EELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVE 306
            EE  K     ++Y  +L    K++  LE ++N +EE   E    ++ ++ L++  +++E
Sbjct: 292 AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELE 351

Query: 307 KYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQ 366
           K    +E   +  EE    K+++++L+ +      +   LE+EL++    K +++    +
Sbjct: 352 KRLEELEERHELYEEAKAKKEELERLKKRLTGLTPE--KLEKELEELEKAKEEIEEEISK 409

Query: 367 MSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQ 426
           ++    +  +E K   K+  E KK + K     RE  +    ++ L+E   ELK      
Sbjct: 410 ITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEE-HRKELLEEYTAELK------ 462

Query: 427 SKSAELNTLGENL-DLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLD 485
               EL  + E    L ++   + ++ +K   L     + +  Q  ++E KL   N +  
Sbjct: 463 RIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAE--QLKELEEKLKKYNLE-- 518

Query: 486 DVTQQVKMKTLENRKANQRILELEAELK--ERVTEDAAGMKVKIFELQNEIKNLKEQINH 543
               +++ K  E  K  +++++L+ E+K  ++  E    +K K+ EL+ ++  L+E++  
Sbjct: 519 ----ELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAE 574

Query: 544 QQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNEL 603
             +E  E G       +S+ + +  +++ E    +Y+E  ++  +L            EL
Sbjct: 575 LLKELEELGF------ESVEELEERLKELEPFYNEYLELKDAEKELER-------EEKEL 621

Query: 604 KNLRKKNDDKDKMLDDLEKTLEKKEQQ 630
           K L ++ D   + L + EK LE+  ++
Sbjct: 622 KKLEEELDKAFEELAETEKRLEELRKE 648

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 57.0 bits (138), Expect = 3e-08
 Identities = 78/351 (22%), Positives = 144/351 (41%), Gaps = 47/351 (13%)

Query: 174 QVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKS------CLVEEKRRLEERFQEN 227
           +V+  +  L  +ID          E   Q+  L+ E+        L++EKR  E      
Sbjct: 181 EVEENIERLDLIID----------EKRQQLERLRREREKAERYQALLKEKREYEGYELLK 230

Query: 228 FVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGE 287
             E   +   ++ RQ+ +L+EEL K      +   +LE   + +E+L  K+  L E   E
Sbjct: 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE--EE 288

Query: 288 ARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLE 347
              +K++   + E   ++   E  I   +    EL D ++++ +LE++    + +  +LE
Sbjct: 289 QLRVKEK---IGELEAEIASLERSIAEKE---RELEDAEERLAKLEAEIDKLLAEIEELE 342

Query: 348 EEL----KKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKE 403
            E+    K+      +    K+++ +L  +  E  K   ++  E K  +EK+  L+RE  
Sbjct: 343 REIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN 402

Query: 404 KLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENN 463
           +L  E D L+E  + L                 E  DL+     I  +  K+  L  E  
Sbjct: 403 ELKRELDRLQEELQRLS---------------EELADLNAA---IAGIEAKINELEEEKE 444

Query: 464 MLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKE 514
              +  K   E KL  + A L    Q++     E  +  + + +L+ EL E
Sbjct: 445 DKALEIKKQ-EWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 56.3 bits (136), Expect = 4e-08
 Identities = 93/527 (17%), Positives = 213/527 (40%), Gaps = 66/527 (12%)

Query: 130 NRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDAR 189
              +  + +I  LE    ++  + ++ELE L          L+   + +    + +   R
Sbjct: 252 EELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLR 311

Query: 190 DQMAQRCMELDMQVSM------LQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQM 243
             + +    L+   S+      L+E+   L  E   L E   E       +       ++
Sbjct: 312 ALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKEL-EERL 370

Query: 244 DALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEAR----YLKDEVDILR 299
           + L++EL KA          ++   +++ +L   L  ++E   E       L+ E++ L 
Sbjct: 371 EELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELE 430

Query: 300 ETAEKVEKYEGIIETYKKKAEELVD-------LKKQVKQLESKNLSYIQ--QTLDLEEEL 350
           E  +K+E+    +E+ +    EL           +++ +   K L  +   +  +LEEEL
Sbjct: 431 EEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEEL 490

Query: 351 KKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERD 410
            +        +  ++   EL     E  +  +  E   ++L+EK+  L+   E+L   ++
Sbjct: 491 SREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKE 550

Query: 411 SLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQK 470
            L+                  L  L E L   ED   + EL++ L  L       +    
Sbjct: 551 KLQ------------------LQQLKEELRQLEDR--LQELKELLEELRLLRTRKE---- 586

Query: 471 DDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFEL 530
                +L  +  +L ++ +++K       +  +R+ +LE  L+     +A          
Sbjct: 587 -----ELEELRERLKELKKKLK-------ELEERLSQLEELLQSLELSEAE--------- 625

Query: 531 QNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLL 590
            NE++  +E++  + E+   Q +L E LQ ++ + + ++++ E + R+ +++  +  +L 
Sbjct: 626 -NELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLE 684

Query: 591 DPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLIATA 637
           +   +      EL+ LR++ ++  K L ++E+ +E+ E ++  +   
Sbjct: 685 EKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEEL 731

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 68/340 (20%), Positives = 148/340 (43%), Gaps = 23/340 (6%)

Query: 176 QNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKG 235
           +     L+ + D  +++ ++  +L+ Q    +  +  L  E R LE       ++   K 
Sbjct: 182 ERTEENLERLEDLLEELEKQLEKLERQAEKAERYQE-LKAELRELELALLLAKLKELRKE 240

Query: 236 NSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEV 295
              +  ++  L+EEL + +   ++   ++E    ++E+L  +L  L+E   E +   +E+
Sbjct: 241 LEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEEL 300

Query: 296 DILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGN 355
           +   E +   E+ E +    ++  E L +LK++++ L+ +         +LE+ L +   
Sbjct: 301 E--GEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEE 358

Query: 356 WKSQVD-MYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKE 414
            K +++      + EL   F    +   + E E  +++ ++  L+RE E L    + L E
Sbjct: 359 AKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSE 418

Query: 415 TNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIE 474
             E+LK  +  +   AEL  L   L+         EL ++L  L  +   L+   K ++E
Sbjct: 419 RLEDLK--EELKELEAELEELQTELE---------ELNEELEELEEQLEELRDRLK-ELE 466

Query: 475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKE 514
            +L  +  +L  + +++            R+  LEAE + 
Sbjct: 467 RELAELQEELQRLEKELS-------SLEARLDRLEAEQRA 499

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 61/303 (20%), Positives = 139/303 (45%), Gaps = 23/303 (7%)

Query: 364 KKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKC-C 422
           K+++ EL  +  E   + +K E E K L+ ++ SL+   E+L  + + L+   EELK   
Sbjct: 666 KRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKREL 725

Query: 423 QLQQSKSAELNTLGENLD--LSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIV 480
              + +  +L +  E L+  L E    + EL+++L  L  E   L+      ++ ++  +
Sbjct: 726 AALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLE-EALAKLKEEIEEL 784

Query: 481 NAKLDDVTQQVKMKTLENRKANQRILELEAELK------ERVTEDAAGMKVKIFELQNEI 534
             K   + ++++    E  +A +R+  LE EL+      ER+ ++   ++ +I EL+ ++
Sbjct: 785 EEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKL 844

Query: 535 KNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTV 594
             L+E++   ++E  E  + +E+L+    + + E+++ EE+  +  E+            
Sbjct: 845 DELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRE--------- 895

Query: 595 QNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLIATAFYNLALQKQRQTADNRL 654
                 +EL  L+++ +   + L++LE  LE+ E +   +                +  +
Sbjct: 896 ----LESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREI 951

Query: 655 ASI 657
             +
Sbjct: 952 ERL 954

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 92/460 (20%), Positives = 208/460 (45%), Gaps = 60/460 (13%)

Query: 206 LQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLE 265
           L+EE   L +E + LEE  +E  +E   K   S+      L+E++       ++   +L+
Sbjct: 219 LREELEKLEKEVKELEELKEE--IEELEKELESLEGSKRKLEEKI----RELEERIEELK 272

Query: 266 IQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDL 325
            + +++E+   +L  L+E A E   L +  +   +   ++EK    +E      EE+  +
Sbjct: 273 KEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLE------EEINGI 326

Query: 326 KKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKS- 384
           ++++K+LE K     +    L+E  K+    + + ++Y++  ++       + +    + 
Sbjct: 327 EERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTP 386

Query: 385 ---EFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELN--TLGENL 439
              E E ++L++    ++ E  K+      LK+  +ELK   +++ K A+      G  L
Sbjct: 387 EKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKK-AIEELKKAKGKCPVCGREL 445

Query: 440 DLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENR 499
                   + E   +L R+  E     + + ++ E KL     +L+ V ++   + ++ +
Sbjct: 446 TEEHRKELLEEYTAELKRIEKE-----LKEIEEKERKLRKELRELEKVLKKES-ELIKLK 499

Query: 500 KANQRILELEAELK-------ERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQG 552
           +  +++ ELE +LK       E+  E+   +K K+ +L+ EIK+LK+++   +E   +  
Sbjct: 500 ELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLA 559

Query: 553 KLIEKLQD------------------SITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTV 594
           +L +KL +                  S+ + +  +++ E    +Y+E  ++  +L     
Sbjct: 560 ELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELER--- 616

Query: 595 QNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLI 634
                  E K L+K  ++ DK  ++L +T ++ E+  K +
Sbjct: 617 -------EEKELKKLEEELDKAFEELAETEKRLEELRKEL 649

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 71/355 (20%), Positives = 157/355 (44%), Gaps = 35/355 (9%)

Query: 238  SMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDI 297
             ++R++ +L+ EL + E+  D+   +L   S+++ ++E ++  LE+        +   + 
Sbjct: 685  GLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ------EEEKLKER 738

Query: 298  LRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWK 357
            L E  E +   E  IE  K    EL +L+ ++++LE       +   DLE  L       
Sbjct: 739  LEELEEDLSSLEQEIENVK---SELKELEARIEELEEDLHKLEEALNDLEARLS-----H 790

Query: 358  SQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNE 417
            S++   + ++S+L  + +    R  + E +  +L  +   L++E ++L  +R  LKE  +
Sbjct: 791  SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK 850

Query: 418  ELKCCQLQQSKSAELNTLGENLD--LSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEG 475
             +      + +   LN   E L+  L E    + +L  +L  L  E + L+  Q  ++E 
Sbjct: 851  SI------EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELE-AQLRELER 903

Query: 476  KLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGM-----KVKIFEL 530
            K+  + A+++   +++     +     + + E+E    E        +     + ++  +
Sbjct: 904  KIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRV 963

Query: 531  QNEIKNLKE----QINHQQEEHLEQGKLIEKLQDSITQKDS---EIQDYEEKNRK 578
            + EI+ L+      I   +E      +L EK      ++ +    I++YE+K R+
Sbjct: 964  EEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 53.5 bits (129), Expect = 3e-07
 Identities = 84/376 (22%), Positives = 175/376 (46%), Gaps = 31/376 (8%)

Query: 152  QSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKS 211
            + I+ELE            L+  +  L  EL+ + +  +Q+ +   EL  Q+S L+++ +
Sbjct: 677  REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA 736

Query: 212  CLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQM 271
             L  E  +LEER  +   E T         +++ L+E L +AE    +   ++E    Q+
Sbjct: 737  RLEAEVEQLEERIAQLSKELTEL-----EAEIEELEERLEEAEEELAEAEAEIEELEAQI 791

Query: 272  EDLELKLNSLEETAGEARYLKDEVDILRETA-EKVEKYEGIIETYKKKAEELVDLKKQVK 330
            E L+ +L +L E   E R    E+ +L E A    E+ E +          L DL++Q++
Sbjct: 792  EQLKEELKALREALDELR---AELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848

Query: 331  QLE------SKNLSYIQQTLD-LEEELKKNGNWKSQVDMY----KKQMSELYNQFNEETK 379
            +L       +  +  +++ ++ LE EL+   N ++ ++      + ++ EL  +  E   
Sbjct: 849  ELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908

Query: 380  RADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENL 439
            +  +   E ++L+EK+  L+   E L V  D+L+E   E     L+++++ E     +  
Sbjct: 909  KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE 968

Query: 440  DLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENR 499
            +       +  L  K+  L    N+  + + ++++ + + + A+ +D+T+    +TLE  
Sbjct: 969  EARRR---LKRLENKIKELG-PVNLAAIEEYEELKERYDFLTAQKEDLTEAK--ETLE-- 1020

Query: 500  KANQRILELEAELKER 515
               + I E++ E +ER
Sbjct: 1021 ---EAIEEIDREARER 1033

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.9 bits (130), Expect = 3e-07
 Identities = 55/353 (15%), Positives = 142/353 (40%), Gaps = 54/353 (15%)

Query: 241 RQMDALKEELFKAESARDDYRIKLEIQSKQMEDLE----------------------LKL 278
           R+ +   EEL + E   +   + ++ + +Q+E L                         L
Sbjct: 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELL 229

Query: 279 NSLEETAGEARYLKDEVDILRETAEKVE-KYEGIIETYKKKAEELVDLKKQVKQLESKNL 337
              E    +   ++ ++  L E  EK+  +   + +  ++  + L +L K++K L  +  
Sbjct: 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ 289

Query: 338 SYIQQTL-DLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVT 396
             +++ + +LE E+    + +  +   ++++ +   +  +     DK   E ++L+ ++ 
Sbjct: 290 LRVKEKIGELEAEIA---SLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE 346

Query: 397 SLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLV 456
             ++ ++KL  E   LKE  E+L+     +    E     + L          + R+KL 
Sbjct: 347 EERKRRDKLTEEYAELKEELEDLR--AELEEVDKEFAETRDELK---------DYREKLE 395

Query: 457 RLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERV 516
           +L  E N L+                +L +  Q++  +  +   A   I     EL+E  
Sbjct: 396 KLKREINELKRELD------------RLQEELQRLSEELADLNAAIAGIEAKINELEEEK 443

Query: 517 TEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEI 569
            + A     +I + + +++ L   ++  ++E  +  +  ++++  +++   E+
Sbjct: 444 EDKAL----EIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQREL 492

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional

 Score = 52.6 bits (126), Expect = 6e-07
 Identities = 75/420 (17%), Positives = 176/420 (41%), Gaps = 50/420 (11%)

Query: 239 MRRQMDALKEELFKAESARDDYRIKL-EIQSKQMEDLELKLNSLEETAGEARYLKDEVDI 297
            + + D L  ++ + E    DY   L  I+S + +        +EE +     +   +  
Sbjct: 344 KKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKK--------IEEYSKNIERMSAFISE 395

Query: 298 LRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKK-NGNW 356
           + +  E     + I +   +   +L D+  +V  L  +  +  +   +L   ++  NG  
Sbjct: 396 ILKIQEIDP--DAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQS 453

Query: 357 KSQV---DMYKKQMSELYNQFNEETKR----ADKSEFENKKLQEKVTSLQREKE------ 403
              V    + +++ + + N +NE+  R      + E E K + EK+  L++ KE      
Sbjct: 454 VCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEE 513

Query: 404 --KLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHE 461
             K I E + ++    +L+  +++ ++  + +   E +     S+ + +L  K     + 
Sbjct: 514 INKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNA 573

Query: 462 NNMLQMNQKDDIEGKLNIVNAKLDDV---TQQVKMKTLENRKANQ---RILELEAELKER 515
             ++ +   +    + N +  +L+D+    Q++++   +++       R +E EA     
Sbjct: 574 LAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNN 633

Query: 516 VTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEK 575
              +    K+ I +L+ +I N K+QI             I      IT + ++I+D  +K
Sbjct: 634 KYNEIQENKILIEKLRGKIDNYKKQIAEIDS--------IIPDLKEITSRINDIEDNLKK 685

Query: 576 NRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLIA 635
           +RK ++ A +    L+ T+         + LR + ++    ++D+ +TLE  ++ +K I 
Sbjct: 686 SRKALDDAKANRARLESTI---------EILRTRINELSDRINDINETLESMKKIKKAIG 736

Length = 895

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 52.5 bits (125), Expect = 8e-07
 Identities = 90/439 (20%), Positives = 180/439 (41%), Gaps = 26/439 (5%)

Query: 208  EEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQ 267
            EEK    E K++ EE  +    +   K     +++ DA K++  +A+ A +  + + E  
Sbjct: 1299 EEKKKADEAKKKAEEAKK---ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA 1355

Query: 268  SKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKK 327
            + + E  E K  + E+   EA+   D      E  +K ++ +   E  KKKA+EL   K 
Sbjct: 1356 ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELK--KA 1413

Query: 328  QVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETK--RADKSE 385
               + ++       +     +E KK      + D  KK+  E       + K   A K++
Sbjct: 1414 AAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAD 1473

Query: 386  FENKKLQE--KVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSE 443
               KK +E  K    +++ E+   + D  K+  E  K  +  ++K AE     +    +E
Sbjct: 1474 EAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK--KADEAKKAEEAKKADEAKKAE 1531

Query: 444  DSVPITELRQ-----------KLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVK 492
            ++    E ++           K   L       +  +    E   N+   K ++  +  +
Sbjct: 1532 EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE 1591

Query: 493  MKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQG 552
             +  E  K  +   +++AE  E    + A +K +  +   E K   EQ+  ++ E  ++ 
Sbjct: 1592 ARIEEVMKLYEEEKKMKAE--EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA 1649

Query: 553  KLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDD 612
            + ++K ++    K +E     E+++K  E+A  A +  D      A   E +  +K  + 
Sbjct: 1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE--DEKKAAEALKKEAEEAKKAEEL 1707

Query: 613  KDKMLDDLEKTLEKKEQQE 631
            K K  ++ +K  E K+ +E
Sbjct: 1708 KKKEAEEKKKAEELKKAEE 1726

Length = 2084

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 94/524 (17%), Positives = 222/524 (42%), Gaps = 38/524 (7%)

Query: 137 TKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRC 196
            KI ELE  + +++      LE L      L    + Q +    EL+      + + +R 
Sbjct: 185 AKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELE---QEIEALEERL 241

Query: 197 MELDMQVSMLQEEKSCL-------VEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEE 249
            EL+ +   L+E K+ L       +E  +  EE  +E               +++ L+ E
Sbjct: 242 AELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKI--ERLEELERE 299

Query: 250 LFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYE 309
           + + E   +  R  LE   + +E L+     LE+   +   L+ E++ L E         
Sbjct: 300 IEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKN------ 353

Query: 310 GIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSE 369
              E  K   E L +L++++++LE +    +++   LEE +++    K ++      + E
Sbjct: 354 ---ELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQE---LKEELAELSAALEE 407

Query: 370 LYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKS 429
           +  +  E  K  ++ E E ++L+E++  L+ +  +L  +   + E     + C +     
Sbjct: 408 IQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVC---G 464

Query: 430 AELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQ 489
            EL    E   L    + + EL ++L R   E  + +  + +++E +L  +  +L ++ +
Sbjct: 465 QELPEEHEKELLELYELELEELEEELSREKEEAELRE--EIEELEKELRELEEELIELLE 522

Query: 490 ----QVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQ 545
                 +    +  K    + ELE   ++   +       ++ +   E+K L E++   +
Sbjct: 523 LEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLR 582

Query: 546 EEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKN 605
                + + +E+L++ + +   ++++ EE+  +  E   S  +L +   +   A  EL++
Sbjct: 583 T----RKEELEELRERLKELKKKLKELEERLSQLEELLQS-LELSEAENELEEAEEELES 637

Query: 606 LRKKNDDKDKMLDDLEKTLEKKEQQEKLIATAFYNLALQKQRQT 649
             +K + + ++ + L+  LE+ E++ + +         + + + 
Sbjct: 638 ELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEE 681

Length = 908

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 49.8 bits (119), Expect = 4e-06
 Identities = 85/483 (17%), Positives = 204/483 (42%), Gaps = 40/483 (8%)

Query: 113 KELARLMQLILGCAINCNRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLD 172
           +EL   ++ +          +  +  +  L E +++++    ++L++L      L   L+
Sbjct: 284 EELEEKIERLEELEREIEELEEELEGLRALLEELEELL----EKLKSLEERLEKLEEKLE 339

Query: 173 PQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPT 232
                L    +   +    + +R  EL+ ++  L++E    +E  ++LEE  QE      
Sbjct: 340 KLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQEL----- 394

Query: 233 NKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLK 292
            +  + +   ++ ++EEL + E   ++   +LE   ++++ LE ++N LE        L 
Sbjct: 395 KEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELA 454

Query: 293 DEVDIL------------RETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYI 340
              +              +E  E  E     +E    + +E  +L++++++LE +     
Sbjct: 455 GAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELE 514

Query: 341 QQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQR 400
           ++ ++L E  +       +     + + E   +  E+ +     E E ++L++++  L+ 
Sbjct: 515 EELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKE-ELRQLEDRLQELKE 573

Query: 401 EKEKLIVERDSLKETNEELKCCQLQQSKSAEL----NTLGENLDLSEDSVPITELRQKLV 456
             E+L + R   +E  E  +  +  + K  EL    + L E L   E S    EL +   
Sbjct: 574 LLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEE 633

Query: 457 RLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERV 516
            L  E   L +  + +      ++ A L+++ ++V+    E R+  QRI   E   ++  
Sbjct: 634 ELESELEKLNLQAELE-----ELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLE 688

Query: 517 TEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKN 576
                    ++ +L+ E++ L+E++    ++  E  +LIE+L+    + +   ++ E+  
Sbjct: 689 ---------ELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLE 739

Query: 577 RKY 579
           +  
Sbjct: 740 KAL 742

Length = 908

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 90/501 (17%), Positives = 210/501 (41%), Gaps = 33/501 (6%)

Query: 189 RDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKE 248
            +++  +  EL   +  L E     ++E ++LEE  +E   E   +   ++  ++  L+E
Sbjct: 187 IEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEE 246

Query: 249 ELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKY 308
           E  + E  +      LEI+S ++E L+++   L E       L+++++ L E   ++E+ 
Sbjct: 247 EKERLEELKARL---LEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEEL 303

Query: 309 EGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMS 368
           E  +E  +   EEL +L +++K LE +     ++   LE EL      +   +   +   
Sbjct: 304 EEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESEL------EELAEEKNELAK 357

Query: 369 ELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSK 428
            L  +  E  +R ++ E E +K  E++  L+   ++L  E   L    EE++    ++ +
Sbjct: 358 LLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQ----EELE 413

Query: 429 SAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDD---------IEGKLNI 479
             E        +L E    I +L +++ +L  +  M+                +  +   
Sbjct: 414 ELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEK 473

Query: 480 VNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKE 539
              +L ++  +   + L   K    + E   EL++ + E    +   +   +   + L+E
Sbjct: 474 ELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEE 533

Query: 540 QINHQQEEHLEQGKLIEKLQ-DSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVA 598
           ++   +    E  +L EKLQ   + ++  +++D  ++ ++ +E+        +       
Sbjct: 534 KLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKE------- 586

Query: 599 ALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLIATAFYNLALQKQRQTADNRLASIT 658
              EL+ LR++  +  K L +LE+ L + E+  + +  +     L++  +  ++ L  + 
Sbjct: 587 ---ELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLN 643

Query: 659 FSQQPQSFLTKQRQASRRNVR 679
              + +  L    +     V 
Sbjct: 644 LQAELEELLQAALEELEEKVE 664

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 66/276 (23%), Positives = 130/276 (47%), Gaps = 24/276 (8%)

Query: 144 ESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCMELDMQV 203
           E   + +   ++ LE+L          L+ Q++ L  EL  + +  +Q+  R  EL+ ++
Sbjct: 687 EEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEEL 746

Query: 204 SMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIK 263
             L+EE   L E    LEE               S+   +  LKEE+ + E  R   + +
Sbjct: 747 EELEEELEELQERLEELEEE------------LESLEEALAKLKEEIEELEEKRQALQEE 794

Query: 264 LEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELV 323
           LE   +++E+ E +L++LE         +    + +E  E  E+ E + E   +  EEL 
Sbjct: 795 LEELEEELEEAERRLDALERELESLE--QRRERLEQEIEELEEEIEELEEKLDELEEELE 852

Query: 324 DLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADK 383
           +L+K++++L+ +      +  +LE+ELK+    + + +  ++++ EL            +
Sbjct: 853 ELEKELEELKEELEELEAEKEELEDELKEL---EEEKEELEEELREL-------ESELAE 902

Query: 384 SEFENKKLQEKVTSLQREKEKLIVERDSLKETNEEL 419
            + E +KL+E++  L+ + E+L VE   L+E  EE 
Sbjct: 903 LKEEIEKLRERLEELEAKLERLEVELPELEEELEEE 938

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 47/251 (18%), Positives = 117/251 (46%), Gaps = 26/251 (10%)

Query: 170 SLDPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFV 229
            L  ++ +L +EL+ + +  D+++Q   +   ++  +++E   L +E+ +L+ER +E   
Sbjct: 685 GLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEE--- 741

Query: 230 EPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEAR 289
                    +   + +L++E+   +S   +   ++E   + +  LE  LN L     EAR
Sbjct: 742 ---------LEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDL-----EAR 787

Query: 290 YLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEE 349
                +  ++    K+E+    IE   ++ E+ ++     K+   K         +++E 
Sbjct: 788 LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK---------EIQEL 838

Query: 350 LKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVER 409
            ++  + K Q+   +K++  L  +  E  +  ++ E   + L+ ++  L++E+++L  + 
Sbjct: 839 QEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL 898

Query: 410 DSLKETNEELK 420
             L+   EEL+
Sbjct: 899 RELERKIEELE 909

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.4 bits (113), Expect = 3e-05
 Identities = 47/221 (21%), Positives = 108/221 (48%), Gaps = 18/221 (8%)

Query: 448 ITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILE 507
           I E R+++  L  +   L+  +  ++E  L  +  +L+++ ++++    E  + +++I  
Sbjct: 672 ILERRREIEELEEKIEELE-EKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA 730

Query: 508 LEAELK------ERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDS 561
           L  +L       E++ E  A +  ++ EL+ EI+ L+E++   +EE  E    IE+L+  
Sbjct: 731 LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ 790

Query: 562 ITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLE 621
           I Q   E++      R+ +++  +   LL+    N+     L++L ++    ++ L+DLE
Sbjct: 791 IEQLKEELK----ALREALDELRAELTLLNEEAANLR--ERLESLERRIAATERRLEDLE 844

Query: 622 KTLEKKEQQEKLIATAFYNL-----ALQKQRQTADNRLASI 657
           + +E+  +  + +A     L      L+ + +   N  AS+
Sbjct: 845 EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL 885

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 45.8 bits (109), Expect = 7e-05
 Identities = 85/487 (17%), Positives = 195/487 (40%), Gaps = 67/487 (13%)

Query: 181 ELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMR 240
           E   V++  ++  +    L+ ++  L+E  +    E+  L E  ++              
Sbjct: 238 EADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRD-------------- 283

Query: 241 RQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRE 300
                L+E L + E  RDD   +  +     E +E +   LE+   E R      D L E
Sbjct: 284 -----LRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELR------DRLEE 332

Query: 301 TAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQV 360
                + +    E+ ++ A            LE +     ++  +LE EL++    +  V
Sbjct: 333 CRVAAQAHNEEAESLREDA----------DDLEERAEELREEAAELESELEEA---REAV 379

Query: 361 DMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420
           +  ++++ EL  +  E  +R   +  +    ++ +  L+ E+++L   R+   E    L+
Sbjct: 380 EDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDEL---REREAELEATLR 436

Query: 421 CCQLQQSKSAEL------NTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIE 474
             + +  ++  L         G+ ++ S     I E R+++  L  E         +D+E
Sbjct: 437 TARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAE--------LEDLE 488

Query: 475 GKLNIVNAKLDDVTQQVKMKTLENRKANQR--ILELEAELKERVTEDAAGMKVKIFELQN 532
            ++  V  +L+     V+ +    R   +R  + EL AE +E + E       +  EL+ 
Sbjct: 489 EEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRE----RAEELRE 544

Query: 533 EIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDP 592
               L+ +   ++E   E  +  E+ ++ + + +S++ + +E+  + +E+  +    +  
Sbjct: 545 RAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKER-IESLERIRTLLAAIAD 603

Query: 593 TVQNVAALNE-LKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLIATAFYNLALQKQRQTAD 651
               +  L E  + L + ND++ + L   EK   K+E + +           ++ ++ A+
Sbjct: 604 AEDEIERLREKREALAELNDERRERLA--EKRERKRELEAEFDEARIE--EAREDKERAE 659

Query: 652 NRLASIT 658
             L  + 
Sbjct: 660 EYLEQVE 666

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 57/285 (20%), Positives = 125/285 (43%), Gaps = 33/285 (11%)

Query: 174 QVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQ-------- 225
           +++ L  EL+ + +   +  +   EL  ++  L+E+   L  E   LEE  +        
Sbjct: 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA 292

Query: 226 --------ENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELK 277
                   E   +   +  +++ RQ++ L+ +L + ES  D+   +L    +++E+L+ +
Sbjct: 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352

Query: 278 LNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNL 337
           L SLE    E          L E   ++E+ E  +ET + K   +  L+ Q+  L ++  
Sbjct: 353 LESLEAELEELE------AELEELESRLEELEEQLETLRSK---VAQLELQIASLNNEIE 403

Query: 338 SYIQQTLDLEEELKKNGNWKSQVD--MYKKQMSELYNQFNEETKRADKSEFENKKLQEKV 395
               +   LE+  ++      ++   + + ++ EL  +  E  +  ++ + E ++L+E +
Sbjct: 404 RLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEAL 463

Query: 396 TSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLD 440
             L+ E E+     D+ +    +L      Q++   L  L ENL+
Sbjct: 464 EELREELEEAEQALDAAERELAQL------QARLDSLERLQENLE 502

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 72/425 (16%), Positives = 185/425 (43%), Gaps = 36/425 (8%)

Query: 241 RQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRE 300
           +  + LKE + +A++  ++   +L    + +EDL   L    +   +   +++E +   E
Sbjct: 171 KLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEE-EE 229

Query: 301 TAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKK-NGNWKSQ 359
             +++E  E  +   +++ E L +LK ++ ++ES  L  ++   +   EL++     + +
Sbjct: 230 LEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEK 289

Query: 360 VDMYKKQMSELYNQFNEETKRADKSEF------ENKKLQEKVTSLQREKEKLIVERDSLK 413
           ++  ++   E+     E        E       + K L+E++  L+ + EKL  E + L 
Sbjct: 290 IERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELA 349

Query: 414 ETNEELKCCQLQQSKSAELNTLGENLDLSED---------SVPITELRQKLVRLTHENNM 464
           E   EL   +L + +  EL    E L+   +            I EL+++L  L+     
Sbjct: 350 EEKNELA--KLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEE 407

Query: 465 LQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEA-------------- 510
           +Q  + +++E +L  +  +L+++ +++K    +  +   + L +                
Sbjct: 408 IQE-ELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQE 466

Query: 511 --ELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSE 568
             E  E+   +   ++++  E +   +  + ++  + EE  ++ + +E+    + + +  
Sbjct: 467 LPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEA 526

Query: 569 IQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKE 628
           +++  E+  + +E      + L   +Q      EL+ L  +  +  ++L++L     +KE
Sbjct: 527 LKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKE 586

Query: 629 QQEKL 633
           + E+L
Sbjct: 587 ELEEL 591

Length = 908

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 20/99 (20%), Positives = 55/99 (55%)

Query: 319 AEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEET 378
            E L +L++++ +L+ +     +Q  +L++E ++     S ++   +++ +   +  + +
Sbjct: 65  RERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLS 124

Query: 379 KRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNE 417
             A + + EN++L+E++  L++E E L  E + L+E  +
Sbjct: 125 ANAIELDEENRELREELAELKQENEALEAENERLQENEQ 163

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional

 Score = 43.4 bits (102), Expect = 4e-04
 Identities = 74/426 (17%), Positives = 176/426 (41%), Gaps = 55/426 (12%)

Query: 242 QMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRET 301
           +++ +K+++   E +      ++E  S +  +     N+L+    E   L+D  +     
Sbjct: 198 ELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYES- 256

Query: 302 AEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNL--------SYIQQTLDLEEELKKN 353
             +++  E  +    +K     +L+++  ++ +  +         Y +   D+E + +  
Sbjct: 257 --EIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQIL 314

Query: 354 GNWKSQVDMYKKQMSEL------YNQFNEETKRADKSEFENKKLQE---KVTSLQREKEK 404
            N  ++++ Y   + +L      YN + ++  R D    +  +L+       S  +  E 
Sbjct: 315 SNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIES 374

Query: 405 LIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNM 464
           L  + +   +  E +     +  K  E++      +L+E +V + ++  K+  L      
Sbjct: 375 LKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRA 434

Query: 465 LQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMK 524
           L+ N  D++   + ++N +       V   TL   K+N         +     E  + ++
Sbjct: 435 LREN-LDELSRNMEMLNGQ---SVCPVCGTTLGEEKSN--------HIINHYNEKKSRLE 482

Query: 525 VKIFELQNEIKNLKEQINHQQ--EEHLEQGK---------LIEKLQDSITQ---KDSEIQ 570
            KI E++ E+K++ E+I   +  +E+LE  +          IE  +  +     K +E++
Sbjct: 483 EKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELK 542

Query: 571 DYEEKNRKYIEKANSAFKLLDPTVQNVAALN--------ELKNLRKKNDDKDKMLDDLEK 622
           D  +K  +   +  S  KL D   +  + LN        +++  R ++++  K L+DLE 
Sbjct: 543 DKHDKYEEIKNRYKS-LKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLES 601

Query: 623 TLEKKE 628
            L++ E
Sbjct: 602 RLQEIE 607

Length = 895

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.4 bits (100), Expect = 8e-04
 Identities = 65/301 (21%), Positives = 144/301 (47%), Gaps = 23/301 (7%)

Query: 299 RETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKS 358
            E+ EKV +    ++ Y+   + L ++ K++K+   +   +I++T ++EE +K+      
Sbjct: 144 DESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELE 203

Query: 359 QVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEE 418
           +V     ++S    +  EE ++ +K   E ++L+E++  L++E E L   +  L+E   E
Sbjct: 204 EVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRE 263

Query: 419 LKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLN 478
           L+  +  +    E+  L E +   ++     E   KL     E      ++  +IE +L+
Sbjct: 264 LE--ERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYL----DELREIEKRLS 317

Query: 479 IVNAKLDDVTQQVKMKTLENRKANQRILELEAELKE------------RVTEDAAGMKVK 526
            +  +++ +  + ++K LE ++   R+ EL+ +LKE             + E+A   K +
Sbjct: 318 RLEEEINGI--EERIKELEEKEE--RLEELKKKLKELEKRLEELEERHELYEEAKAKKEE 373

Query: 527 IFELQNEIKNL-KEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANS 585
           +  L+  +  L  E++  + EE  +  + IE+    IT +  E++   ++ +K IE+   
Sbjct: 374 LERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKK 433

Query: 586 A 586
           A
Sbjct: 434 A 434

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 33/185 (17%), Positives = 83/185 (44%), Gaps = 3/185 (1%)

Query: 169 MSLDPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQE-- 226
             L  ++ NL  +L+ +    +++  +  EL  +++ L+E+   L EE   LE   +E  
Sbjct: 305 QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE 364

Query: 227 NFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAG 286
             +E        +  Q++ L+ ++ + E        ++E    ++E LE +   L++   
Sbjct: 365 AELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE 424

Query: 287 EARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDL 346
           E     +E + L+E   ++E+ E  +E  +++ E L +  +++++   +    +      
Sbjct: 425 ELLKKLEEAE-LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483

Query: 347 EEELK 351
             +L+
Sbjct: 484 LAQLQ 488

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 65/318 (20%), Positives = 133/318 (41%), Gaps = 50/318 (15%)

Query: 321 ELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKR 380
           E+ +L++++++LE K     +   +L +EL+     + +++  +K++ EL  Q +   K 
Sbjct: 678 EIEELEEKIEELEEKIAELEKALAELRKELE---ELEEELEQLRKELEELSRQISALRKD 734

Query: 381 ADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLD 440
             + E E ++L+E++  L +E  +L  E + L+E  EE                     +
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE------------------AEEE 776

Query: 441 LSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRK 500
           L+E    I EL  ++ +L          +   +   L+ + A+L          TL N +
Sbjct: 777 LAEAEAEIEELEAQIEQL--------KEELKALREALDELRAEL----------TLLNEE 818

Query: 501 ANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQD 560
           A      LE      +    A  + ++ +L+ +I+ L E I     E  E  +LIE+L+ 
Sbjct: 819 AANLRERLE-----SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES 873

Query: 561 SITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDL 620
            +    +E    EE     +    S  + L   ++ +   ++   LR++ ++  + L  L
Sbjct: 874 ELEALLNERASLEE----ALALLRSELEELSEELRELE--SKRSELRRELEELREKLAQL 927

Query: 621 EKTLEKKEQQEKLIATAF 638
           E  LE  E +   +    
Sbjct: 928 ELRLEGLEVRIDNLQERL 945

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 39/184 (21%), Positives = 78/184 (42%), Gaps = 13/184 (7%)

Query: 174 QVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTN 233
           +++  + EL+  I+A  +  +    L  ++  L  E     EE         E       
Sbjct: 320 ELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLE------- 372

Query: 234 KGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKD 293
                +    +AL+EEL + E+   + R +LE   +++E LE +L  L E        ++
Sbjct: 373 ----ELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSER--LEDLKEE 426

Query: 294 EVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKN 353
             ++  E  E   + E + E  ++  E+L +L+ ++K+LE +     ++   LE+EL   
Sbjct: 427 LKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSL 486

Query: 354 GNWK 357
               
Sbjct: 487 EARL 490

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 57/314 (18%), Positives = 120/314 (38%), Gaps = 26/314 (8%)

Query: 150 IMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEE 209
           +   ++ +EN              ++  +  E++ +    +++ +R  EL+  +S L++E
Sbjct: 693 LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE 752

Query: 210 KSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIK-----L 264
              +  E + LE R +E            +   +  L+E L   E+     RI      L
Sbjct: 753 IENVKSELKELEARIEE------------LEEDLHKLEEALNDLEARLSHSRIPEIQAEL 800

Query: 265 EIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVD 324
               +++  +E +L  +E+        K+ ++  +E  E  E+   + E  K   +E+ +
Sbjct: 801 SKLEEEVSRIEARLREIEQKLNRLTLEKEYLE--KEIQELQEQRIDLKEQIKSIEKEIEN 858

Query: 325 LKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKS 384
           L  + ++LE +         DLE  L    + K + D  + Q+ EL  +  E   + +K 
Sbjct: 859 LNGKKEELEEELEELEAALRDLESRLG---DLKKERDELEAQLRELERKIEELEAQIEKK 915

Query: 385 EFENKKLQEKVTSLQREKEKLIVERDSLKETNEEL----KCCQLQQSKSAELNTLGENLD 440
                +L+ K+ +L+ E  ++   +   +E  EE           Q    E+  L     
Sbjct: 916 RKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNM 975

Query: 441 LSEDSVPITELRQK 454
           L+         R  
Sbjct: 976 LAIQEYEEVLKRLD 989

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.4 bits (99), Expect = 0.001
 Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 14/214 (6%)

Query: 208  EEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALK-EELFKAESARDDYRIKLEI 266
            EEK    E K+  E +  E   +      +   + M   K EE  KAE AR +  +KL  
Sbjct: 1543 EEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYE 1602

Query: 267  QSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLK 326
            + K+M+  E K               +E  I  E  +K E+ +  +E  KKK  E     
Sbjct: 1603 EEKKMKAEEAKK-------------AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA 1649

Query: 327  KQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEF 386
            +++K+ E +N     +     EE KK      + +  +K+ +E   +  EE K+A++ + 
Sbjct: 1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKK 1709

Query: 387  ENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420
            +  + ++K   L++ +E+  ++ +  K+  EE K
Sbjct: 1710 KEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDK 1743

Length = 2084

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 42.3 bits (100), Expect = 0.001
 Identities = 73/410 (17%), Positives = 165/410 (40%), Gaps = 62/410 (15%)

Query: 172 DPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEP 231
           D   + + A  + + D  +++  R  E  +      EE   L E+   LEER +E     
Sbjct: 306 DADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEE----- 360

Query: 232 TNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYL 291
                  +R +   L+ EL +A  A +D R ++E   +++E+L  +        G A   
Sbjct: 361 -------LREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDF 413

Query: 292 KDEVD---------------ILRETAEKVEKYEGIIETYK-----------KKAEELVDL 325
            +E+                 LR   E+VE+ E ++E  K              E + + 
Sbjct: 414 LEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEED 473

Query: 326 KKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSE 385
           +++V++LE++     ++  ++EE L++  +        + ++  L  +  +  +   +  
Sbjct: 474 RERVEELEAELEDLEEEVEEVEERLERAEDLVEA----EDRIERLEERREDLEELIAERR 529

Query: 386 FENKKLQEKVTSLQREKEKLIVE-----------RDSLKETNEELKCCQLQQSKSAELNT 434
              ++ +E+   L+    +L  E            +  +E  EE+       SK AEL  
Sbjct: 530 ETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAEL---NSKLAELKE 586

Query: 435 LGENLD-LSEDSVPITELRQKLVRLTHENNMLQM--NQKDDIEGKLNIVNAKLDDVTQQV 491
             E+L+ +      I +   ++ RL  +   L    +++ +   +      +L+    + 
Sbjct: 587 RIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEA 646

Query: 492 KMKTLENRKAN--QRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKE 539
           +++     K    + + ++E +L E   E+   ++ +I  ++NE++ L+E
Sbjct: 647 RIEEAREDKERAEEYLEQVEEKLDEL-REERDDLQAEIGAVENELEELEE 695

Length = 880

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 41.8 bits (99), Expect = 0.001
 Identities = 63/329 (19%), Positives = 119/329 (36%), Gaps = 74/329 (22%)

Query: 240 RRQMDALKEEL----------FKAESARDDYRIKLEIQSKQMEDLEL------KLNSLEE 283
           +   D + E L           K E + +  R    + +K  E L+       KLN L E
Sbjct: 15  KSYKDEVLEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLRE 74

Query: 284 TAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQT 343
              +      E +++++  E++EK E   +  K+  EE+ +L+ ++K+LE +        
Sbjct: 75  EKKKVSVKSLE-ELIKDVEEELEKIE---KEIKELEEEISELENEIKELEQE-------- 122

Query: 344 LDLEEELKKNGNWKS-QVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREK 402
               E L+    W +  +D+      +  + F          E + +   E V  +  +K
Sbjct: 123 ---IERLEP---WGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDK 176

Query: 403 EK----LIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRL 458
                 ++V ++   E  EELK                E L+L E+  P   +R+    L
Sbjct: 177 GYVYVVVVVLKELSDEVEEELKKLGF------------ERLELEEEGTPSELIREIKEEL 224

Query: 459 THENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTE 518
                     +++ +  +L  +  K  +    +    LE           EA  K   T+
Sbjct: 225 EEIE-----KERESLLEELKELAKKYLEELLALYEY-LEIELE-----RAEALSKFLKTD 273

Query: 519 DAAGMKVKIFELQ-----NEIKNLKEQIN 542
                  K F ++     + +K LKE I+
Sbjct: 274 -------KTFAIEGWVPEDRVKKLKELID 295

Length = 646

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 58/404 (14%), Positives = 149/404 (36%), Gaps = 8/404 (1%)

Query: 233  NKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLK 292
             + N +     +  K         +D    KL   +K  E    K  SLEE   E   LK
Sbjct: 607  AQLNKATLEADEDDKRAKVVEGILKDTELTKLLESAKAKESGLRKGVSLEEGLAEKSELK 666

Query: 293  DEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKK 352
              +  L +     ++ +   E+   K E L    ++ ++++ K     ++   L+ E ++
Sbjct: 667  ASLSELTKELLAEQELQEKAESELAKNEIL----RRQEEIKKKEQRIKEELKKLKLEKEE 722

Query: 353  NGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSL 412
                K Q    K        +   + K  ++ +   KK +E+    +    K     +  
Sbjct: 723  LLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELS-LKEKELAEEE 781

Query: 413  KETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDD 472
            ++T +     + ++   A+   L    +  ++   + E  Q L+    +    ++ +   
Sbjct: 782  EKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELAL 841

Query: 473  IEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQN 532
               +   +    ++  ++++ +  +     + +L+ E   ++++ ++    + K  E + 
Sbjct: 842  ELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKK 901

Query: 533  EIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDP 592
            E++   ++ N  +E+  E  + I +    + + +SE    E    +  EK        + 
Sbjct: 902  ELEEESQKDNLLEEKENEIEERIAEEAIILLKYESEP--EELLLEEADEKEKEEDNKEEE 959

Query: 593  TVQNVAALNELKNLRKKN-DDKDKMLDDLEKTLEKKEQQEKLIA 635
              +N   L   + L   N     +  +  E+  + + ++E+L  
Sbjct: 960  EERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEE 1003

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 36/203 (17%), Positives = 89/203 (43%), Gaps = 4/203 (1%)

Query: 130 NRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDAR 189
           ++      ++ ELEE   + + + ++ LE       +    L+ +++ L  +L+T+    
Sbjct: 330 SKLDELAEELAELEE-KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388

Query: 190 DQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEE 249
            Q+  +   L+ ++  L+     L + + RL++  +E   +        ++ +++ L+EE
Sbjct: 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE 448

Query: 250 LFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYE 309
           L + +   +     LE   +++E+ E  L++ E    E   L+  +D L    E +E + 
Sbjct: 449 LEELQEELERLEEALEELREELEEAEQALDAAER---ELAQLQARLDSLERLQENLEGFS 505

Query: 310 GIIETYKKKAEELVDLKKQVKQL 332
             ++   K    L  +   + +L
Sbjct: 506 EGVKALLKNQSGLSGILGVLSEL 528

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 59/264 (22%), Positives = 121/264 (45%), Gaps = 23/264 (8%)

Query: 238 SMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARY------- 290
            +R +++ L+EEL +AE   ++   +L+   +++E+L L+++ LEE   E +        
Sbjct: 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295

Query: 291 ----LKDEVDILRETAEKVEK----YEGIIETYKKKAEELV-DLKKQVKQLESKNLSYIQ 341
               L+ +  ILRE    +E+     E  +E  + K +EL  +L +  ++LE        
Sbjct: 296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELES 355

Query: 342 QTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQRE 401
              +LEE   +    +S+++  ++Q+  L ++  +   +      E ++L+ ++  L+  
Sbjct: 356 LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDR 415

Query: 402 KEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHE 461
           +E+L  E + L +  EE +  +  Q++  EL    E L    +      L + L  L  E
Sbjct: 416 RERLQQEIEELLKKLEEAE-LKELQAELEELEEELEELQEELE-----RLEEALEELREE 469

Query: 462 NNMLQMNQKDDIEGKLNIVNAKLD 485
               +    D  E +L  + A+LD
Sbjct: 470 LEEAE-QALDAAERELAQLQARLD 492

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	684
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	100.0
KOG4643|consensus	1195		99.95
KOG0161|consensus	1930		99.55
KOG0161|consensus	1930		99.55
PRK02224	880	chromosome segregation protein; Provisional	99.33
PRK02224	880	chromosome segregation protein; Provisional	99.22
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.18
PRK03918	880	chromosome segregation protein; Provisional	99.18
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.17
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.14
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.12
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.07
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.05
PRK03918	880	chromosome segregation protein; Provisional	99.03
KOG4674|consensus	1822		99.01
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.97
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.94
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.9
KOG0971|consensus	1243		98.89
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.88
KOG0976|consensus	1265		98.88
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	98.8
PRK01156	895	chromosome segregation protein; Provisional	98.75
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.73
KOG0933|consensus	1174		98.72
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.68
KOG4643|consensus	1195		98.59
PRK04778	569	septation ring formation regulator EzrA; Provision	98.59
KOG4674|consensus	1822		98.5
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.47
KOG0976|consensus	1265		98.45
KOG0971|consensus	1243		98.44
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.42
PRK04778	569	septation ring formation regulator EzrA; Provision	98.42
PRK01156	895	chromosome segregation protein; Provisional	98.39
KOG0977|consensus	546		98.33
KOG0612|consensus	1317		98.33
KOG0977|consensus	546		98.28
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.23
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.16
KOG0250|consensus	1074		98.14
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	98.08
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.02
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	98.01
KOG0996|consensus	1293		98.0
KOG0995|consensus	581		97.99
PRK04863	1486	mukB cell division protein MukB; Provisional	97.96
PHA02562	562	46 endonuclease subunit; Provisional	97.92
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.88
KOG4673|consensus	961		97.86
KOG0999|consensus	772		97.85
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.85
KOG0933|consensus	1174		97.82
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.78
PRK04863	1486	mukB cell division protein MukB; Provisional	97.77
KOG0946|consensus	970		97.68
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.66
KOG0994|consensus	1758		97.61
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.59
PHA02562	562	46 endonuclease subunit; Provisional	97.59
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.59
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.57
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.56
KOG0964|consensus	1200		97.53
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.52
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.51
PRK11637	428	AmiB activator; Provisional	97.5
PF00307	108	CH: Calponin homology (CH) domain; InterPro: IPR00	97.48
KOG4673|consensus	961		97.47
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.42
PRK11637	428	AmiB activator; Provisional	97.32
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.32
KOG0612|consensus	1317		97.32
KOG0996|consensus	1293		97.3
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.03
KOG0994|consensus	1758		97.02
KOG0964|consensus	1200		96.97
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.97
KOG0995|consensus	581		96.91
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.87
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.82
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.77
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.73
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	96.73
KOG0250|consensus	1074		96.67
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.67
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.64
PF14662	193	CCDC155: Coiled-coil region of CCDC155	96.6
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	96.59
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	96.57
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.53
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	96.43
PF06294	158	DUF1042: Domain of Unknown Function (DUF1042); Int	96.31
KOG0999|consensus	772		96.28
KOG1029|consensus	1118		96.24
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.23
PLN02939	977	transferase, transferring glycosyl groups	96.2
KOG4593|consensus	716		96.17
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.12
KOG0978|consensus	698		96.08
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	96.03
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	95.87
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.84
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	95.83
KOG1029|consensus	1118		95.8
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.78
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	95.73
KOG0980|consensus	980		95.69
PRK09039	343	hypothetical protein; Validated	95.58
cd00014	107	CH Calponin homology domain; actin-binding domain	95.5
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.47
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	95.31
KOG0963|consensus	629		95.28
PRK09039	343	hypothetical protein; Validated	95.27
KOG0980|consensus	980		95.22
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	95.21
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	95.21
COG5185	622	HEC1 Protein involved in chromosome segregation, i	95.12
KOG0982|consensus	502		94.93
COG4477	570	EzrA Negative regulator of septation ring formatio	94.84
KOG1899|consensus	861		94.77
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	94.72
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	94.65
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	94.53
smart00033	103	CH Calponin homology domain. Actin binding domains	94.34
PF13514	1111	AAA_27: AAA domain	94.25
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	94.15
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	94.02
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	94.01
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	93.89
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	93.77
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.72
KOG1853|consensus	333		93.7
KOG0979|consensus	1072		93.7
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	93.69
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	93.67
KOG0946|consensus	970		93.6
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	93.44
KOG4593|consensus	716		93.26
KOG1003|consensus	205		92.98
KOG1853|consensus	333		92.92
KOG1003|consensus	205		92.81
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.8
KOG0982|consensus	502		92.72
COG4372	499	Uncharacterized protein conserved in bacteria with	92.68
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	92.64
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	91.98
COG4477	570	EzrA Negative regulator of septation ring formatio	90.9
PF11971	85	CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T	90.86
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	90.77
COG5185	622	HEC1 Protein involved in chromosome segregation, i	90.76
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	90.75
KOG0804|consensus	493		90.4
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	90.0
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	89.99
KOG2991|consensus	330		89.44
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	89.43
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	89.27
PF13514	1111	AAA_27: AAA domain	89.16
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	89.05
KOG0978|consensus	698		88.88
PRK10884	206	SH3 domain-containing protein; Provisional	88.31
KOG0018|consensus	1141		88.14
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	87.93
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	87.66
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	87.46
KOG0963|consensus	629		87.29
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	87.09
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	86.9
PF04728	56	LPP: Lipoprotein leucine-zipper; InterPro: IPR0068	86.7
KOG0979|consensus	1072		86.65
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	86.39
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	86.16
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	86.16
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	86.14
COG2433	652	Uncharacterized conserved protein [Function unknow	85.98
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	85.68
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	85.32
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	85.18
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	84.96
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	84.96
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	84.92
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	84.49
KOG1962|consensus	216		84.01
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	83.32
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	83.1
KOG0018|consensus	1141		82.91
KOG0962|consensus	1294		82.76
PF10226	195	DUF2216: Uncharacterized conserved proteins (DUF22	82.69
COG2433	652	Uncharacterized conserved protein [Function unknow	82.37
KOG2046|consensus	193		80.69
KOG0804|consensus	493		80.06

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=100.00  E-value=9.5e-113  Score=989.78  Aligned_cols=671  Identities=44%  Similarity=0.691  Sum_probs=126.9

Q ss_pred             CCcChHHhHHHHHHHHhhcCCCCCCCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHH
Q psy11659          4 TQEDQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGI   83 (684)
Q Consensus         4 ~~~~~~~~~~~l~~W~~tf~~~~~~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i   83 (684)
                      |+.+++++|+|||+||+||+++.||.++.||+|||+||+||++|||.||+++||++|+.++++ ||++|++||++||++|
T Consensus         1 ~~~~~~~l~~~Lv~Wv~tf~~~~~~~~~~dL~DGv~L~evL~qIDp~~F~~~~l~~i~~~~~~-nw~lr~~NLk~l~~~i   79 (713)
T PF05622_consen    1 MSDDKMELCDSLVTWVQTFNLSAPCSSYEDLSDGVALAEVLHQIDPEYFNDSWLSRIKEDVGD-NWRLRVSNLKKLLRNI   79 (713)
T ss_dssp             ------HHHHHHHHHHTT---SS---SHHHHTTSHHHHHHHHHH-TTTS-HHHHTT--SGGGG--SHHHHHHHHHHHHHH
T ss_pred             CCcchhhHHHHHHHHHHHCCCCCCcCCHHHccchHHHHHHHHHhCccccCcHHhhcCCCCCCc-cHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHhhcccccCccccchhHHhhcCCHHHHHHHHHHHHHHHhcCCCchhhhHHhHcCCHHHHHHHHHHHHHHhcccC-
Q psy11659         84 VDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCNRKQNYITKIMELEESVQQVIMQSIQELENLHG-  162 (684)
Q Consensus        84 ~~y~~~~l~~~~~~~~~pd~~~ia~~~d~~el~~ll~lvl~~av~~~~~~~~I~~I~~L~~~~Q~~lm~~Iq~~~~~~~-  162 (684)
                      .+||+++||++++.+++||+..||++||+.+|++||.|||||||+||+|+.||++||+|+.+||++||.+||+||+..+ 
T Consensus        80 ~~yy~e~L~~~i~~~~~Pd~~~Iae~~d~~El~kLL~LlLgcAV~c~~ke~yI~~I~~Ld~~~Q~~im~~Iqev~~~~~~  159 (713)
T PF05622_consen   80 KSYYQEELGQQISEMPLPDLQAIAENSDPEELKKLLQLLLGCAVQCENKEEYIQRIMELDESTQHAIMEAIQEVTSNQQN  159 (713)
T ss_dssp             HHHHHTTT-----TTT---HHHHHTT--HHHHHHHHHHHHHHTTSSSTHHHHHHHHHHS-HHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHcCCCcCcCCCCCHHHHHhCCCHHHHHHHHHHHHHHhhcCccHHHHHHHHHCCCHHHHHHHHHHHHHHhccccc
Confidence            9999999999888899999999999999999999999999999999999999999999999999999999999999832 


Q ss_pred             --CCCCCCCCccHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------CCcccc
Q psy11659        163 --STHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENF------VEPTNK  234 (684)
Q Consensus       163 --~~~~~~~~~~~~~~~~~~~l~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~~------~~~~~~  234 (684)
                        .+.+++++++..++.++.++..+.+++|.+.++|++++.++..|.++++.|..++..+..+++..+      +++.+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~  239 (713)
T PF05622_consen  160 VSLSQDSPEDLDSQSRRMYEELSRLVAERDELAQRCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSV  239 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHH
Confidence              345567778888888888999999999999999999999999999999999999999998887655      133457


Q ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        235 GNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIET  314 (684)
Q Consensus       235 ~~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~  314 (684)
                      ++..++.+++.+++++++.+..+++++.+++.+++++.++++++++|...+.+++.|+|++|.+|++++++.++++.+++
T Consensus       240 ~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~  319 (713)
T PF05622_consen  240 ELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEK  319 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy11659        315 YKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEK  394 (684)
Q Consensus       315 ~k~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~  394 (684)
                      ||+|++++.+++++++.|++.|..|++++..||++++++.+++.+++.|++++.+++..+.+...+++.+++++..++++
T Consensus       320 YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek  399 (713)
T PF05622_consen  320 YKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEK  399 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhcc-----cccccccccCChHHHHHHHHHHHHHHHHhhhhc
Q psy11659        395 VTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLG-----ENLDLSEDSVPITELRQKLVRLTHENNMLQMNQ  469 (684)
Q Consensus       395 l~~le~e~e~l~~e~~~L~e~~~eL~~~q~~~~~~~~l~~~~-----~~~~~~~e~~~~~el~~~l~~Le~Enk~Lr~~~  469 (684)
                      +..++.+++++..+++.|++.+++|.|.+.+...   +..++     .....+.++.+ .++++++.+|++||+.|+..+
T Consensus       400 ~~~l~~eke~l~~e~~~L~e~~eeL~~~~~~~~~---l~~~~~~~~~~~~~l~~El~~-~~l~erl~rLe~ENk~Lk~~~  475 (713)
T PF05622_consen  400 LEALEEEKERLQEERDSLRETNEELECSQAQQEQ---LSQSGEESSSSGDNLSAELNP-AELRERLLRLEHENKRLKEKQ  475 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc---cccccccccccccchhhhccc-hHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999987654332   21111     11122345567 789999999999999999888


Q ss_pred             ccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------hhhHhHHHHhH-------HHHHHH
Q psy11659        470 KDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERV---------TEDAAGMKVKI-------FELQNE  533 (684)
Q Consensus       470 ~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~---------~~~~~~lk~kl-------~e~~~e  533 (684)
                      ++..++++..|+..|+++++.+..|+.+++....++..++.+++++.         ..++..+++++       .++..+
T Consensus       476 e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l~~~~~~~~d~~~lk~~le~~~~~l~e~~~e  555 (713)
T PF05622_consen  476 EESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKSLQEQGSKSEDSSELKQKLEEHLEKLRELKDE  555 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            88777888999999999999999999999999999999999999872         22345666655       455566


Q ss_pred             HHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhchhhHHHHHHHHHhHHh
Q psy11659        534 IKNLKEQINHQQEEHLEQ-GKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDD  612 (684)
Q Consensus       534 le~~r~~l~~le~q~~~~-~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~~~~~ei~~Lr~ql~e  612 (684)
                      +.+.+..+++++...... ..++.+|+..|..++.+|+.++++|++|+++|+++|++|+|++++  +.+++..|++++.+
T Consensus       556 ~~~~~~~le~l~~~~~~~~~~ki~~Le~~L~~k~~e~~~~eer~k~~lekak~vi~~Ld~k~~~--~~~e~~~L~~ql~e  633 (713)
T PF05622_consen  556 LQKKREQLEELEQELNQSLSQKIEELEEALQKKEEEMRAMEERYKKYLEKAKEVIKTLDPKQNP--SSPEIQALKKQLQE  633 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHhhccChhccC--ChHHHHHHHHHHHH
Confidence            667777788877776544 788999999999999999999999999999999999999999987  88899999999999


Q ss_pred             hhhhHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHhHhhhhhcccCCCCCcchhhhhhhhh--ccCCCCCCC
Q psy11659        613 KDKMLDDLEKTLEKK----EQQEKLIATAFYNLALQKQRQTADNRLASITFSQQPQSFLTKQRQAS--RRNVRPVAP  683 (684)
Q Consensus       613 ~e~~i~~LE~~~~~~----~~E~~l~~~a~y~~~~~~~~~~~~~r~~~~~~~~~~~sfl~~qr~~~--~~~~~~~~~  683 (684)
                      ++++|+.||.+++++    ++|++||+||||||||+||+.+|++|++++  +|+||||||||||+|  ||++++.+|
T Consensus       634 ~~~~i~~lE~~~e~~k~~~~~EekLi~sa~y~~g~~~~~~~~~~r~~~~--~~~~~sfL~rqR~~~~~r~~~~~~~~  708 (713)
T PF05622_consen  634 KDRRIESLEKELEKSKQMREQEEKLIVSAWYNLGMRLHREAMESRLAAL--SGPGQSFLARQRQATNARRGPSGRVQ  708 (713)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CCCCccHHHHhhccccCCCCCCCCCC
Confidence            999999999999887    999999999999999999999999999876  479999999999999  888777544

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG4643|consensus

Probab=99.95  E-value=7.6e-22  Score=218.94  Aligned_cols=296  Identities=21%  Similarity=0.309  Sum_probs=205.5

Q ss_pred             hcHHHHHHHHHHHHHHhhcccccCccccchhHHhhcCC----HHHHHHHHHHHHHHHhcCCCchhhhHHhHcCCHHHHHH
Q psy11659         74 SNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENID----AKELARLMQLILGCAINCNRKQNYITKIMELEESVQQV  149 (684)
Q Consensus        74 ~Nl~~i~~~i~~y~~~~l~~~~~~~~~pd~~~ia~~~d----~~el~~ll~lvl~~av~~~~~~~~I~~I~~L~~~~Q~~  149 (684)
                      .|+..+++.+..||++.+|+.+. . +||...|+.+|.    ...|..++.++|||||+|++++-||.+|+.++-++++.
T Consensus         2 ~n~~~~vR~~ke~~ee~lgqli~-~-lpd~~~lg~~p~s~ng~e~ik~ll~llLg~avqcp~kelfi~riq~ldlete~a   79 (1195)
T KOG4643|consen    2 KNFECVVRNMKETDEEGLGQLII-E-LPDDDMLGSTPSSSNGEEAIKQLLQLLLGSAVQCPTKELFIQRIQILDLETEMA   79 (1195)
T ss_pred             ccHHHHHHHHHHHHHHhccceeE-e-cCchhhhccCccccchHHHHHHHHHHHHHhhhcCCcHHHHHHHHHhhhhHHHHH
Confidence            58999999999999999998554 3 899999999883    57899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCCCCCCccH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q psy11659        150 IMQSIQELENLHGSTHSLNMSLDP----QVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERF-  224 (684)
Q Consensus       150 lm~~Iq~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~-  224 (684)
                      +|..|+++++..+..    -+++.    .....+.++..+...++.+..++-+.....+.+.-+   ...+.-.+...+ 
T Consensus        80 ~~~~iaevtd~~~~v----leld~~er~~~~q~~~hir~llk~r~~~~k~~id~~qe~se~i~e---~~le~vGl~~~~~  152 (1195)
T KOG4643|consen   80 QMRTIAEVTDEECQV----LELDNEERAQKIQILEHIRLLLKDRKKKWKSVIDDLQEASEKIAE---KLLELVGLEKKYR  152 (1195)
T ss_pred             HHHHHHHhhhhHHhh----hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcccceee
Confidence            999999998763211    11111    223356677777777766554443332222211100   001111111111 


Q ss_pred             -hhcC----CCc-----------------cccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        225 -QENF----VEP-----------------TNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLE  282 (684)
Q Consensus       225 -~~~~----~~~-----------------~~~~~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~  282 (684)
                       +..+    .++                 ...+++.|++++++.-+.+.       +++..+..++.++..+++++.++.
T Consensus       153 ~s~s~~~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~enll-------~lr~eLddleae~~klrqe~~e~l  225 (1195)
T KOG4643|consen  153 ESRSGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENLL-------RLRNELDDLEAEISKLRQEIEEFL  225 (1195)
T ss_pred             ccccCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence             0011    111                 01356777777777776664       456666677777888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------h
Q psy11659        283 ETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGN------W  356 (684)
Q Consensus       283 ~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~------~  356 (684)
                      ..+..++.++++++.+++.++...      .+||.++-++.+++.++.+|+..|..+.+....|++++..+.+      +
T Consensus       226 ~ea~ra~~yrdeldalre~aer~d------~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tl  299 (1195)
T KOG4643|consen  226 DEAHRADRYRDELDALREQAERPD------TTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATL  299 (1195)
T ss_pred             HHHHhhhhhhhHHHHHHHhhhcCC------CccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCCh
Confidence            999999999999999999776655      7899999999999999999999999999999999999988732      2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy11659        357 KSQVDMYKKQMSELYNQFNEETKRADKSEFENKKL  391 (684)
Q Consensus       357 r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L  391 (684)
                      ..++-+|+.++.+++...+-...++.+|..|+..|
T Consensus       300 eseiiqlkqkl~dm~~erdtdr~kteeL~eEnstL  334 (1195)
T KOG4643|consen  300 ESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTL  334 (1195)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            23334444444444443333333333333333333

>KOG0161|consensus

Probab=99.55  E-value=3e-09  Score=130.95  Aligned_cols=427  Identities=22%  Similarity=0.303  Sum_probs=238.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHHHHHHHHHHHHHHHHHh
Q psy11659        175 VQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAE  254 (684)
Q Consensus       175 ~~~~~~~l~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~~~~~~~~~~~~L~~qleel~e~l~~~e  254 (684)
                      .++...++.......+.+.....+++.++.....+...+...++.....+..     ..+.+..|+.++.++.+.+....
T Consensus      1043 ~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~-----l~k~i~eL~~~i~el~e~le~er 1117 (1930)
T KOG0161|consen 1043 KRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQ-----LQKQIKELEARIKELEEELEAER 1117 (1930)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344344433333334344444555555444444444444444444333222     23456667777777777776555


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHH
Q psy11659        255 SARDDYRIKLEIQSKQMEDLELKLNSLEE----TAGEARYLKDEVDILRETAEK-VEKYEGIIETYKKKAE-ELVDLKKQ  328 (684)
Q Consensus       255 ~~~~~~~~~~~~le~el~~l~~k~~~L~~----~a~~~~~L~deld~lr~~~~~-~~k~e~~le~~k~kle-el~~l~~~  328 (684)
                      ..+..+......|..++..++.++++.-.    ...-......++..++...+. ....+..+..++++.. .+..+..+
T Consensus      1118 ~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~q 1197 (1930)
T KOG0161|consen 1118 ASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQ 1197 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555666666666666554411    111112222333334433322 2345566666666654 45666677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-------hchHHH----HHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHH
Q psy11659        329 VKQLESKNLSYIQQTLDLEEELKKN-------GNWKSQ----VDMYKKQMSELYNQFNEETKR-------ADKSEFENKK  390 (684)
Q Consensus       329 ~~~Le~~~~~l~~~~~~LEeel~~~-------~~~r~~----le~~k~qi~~l~~~l~e~~~~-------~~~le~e~~~  390 (684)
                      +..+...+..+......++.+....       ...+..    ...+..++.+++..+++....       ..++..++..
T Consensus      1198 le~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~ 1277 (1930)
T KOG0161|consen 1198 LEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEE 1277 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            7777666665555544444444333       111111    112222333333333333322       2222222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhcccccccccccCChHHHHHHHHHHHHHHHHhhhhcc
Q psy11659        391 LQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQK  470 (684)
Q Consensus       391 L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~~q~~~~~~~~l~~~~~~~~~~~e~~~~~el~~~l~~Le~Enk~Lr~~~~  470 (684)
                      +...+.+.+.....+......+...++++.. +        +..      .+.   .-..+-..+.++++|+..|+.+.+
T Consensus      1278 l~~~lee~e~~~~~~~r~~~~~~~qle~~k~-q--------le~------e~r---~k~~l~~~l~~l~~e~~~l~e~le 1339 (1930)
T KOG0161|consen 1278 LSRQLEEAEAKLSALSRDKQALESQLEELKR-Q--------LEE------ETR---EKSALENALRQLEHELDLLREQLE 1339 (1930)
T ss_pred             HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------HHH------HHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222222222222222222222222210 0        000      000   014456778888888888887777


Q ss_pred             cchhhhHHHHHhhH--------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh------HHHHhHHH
Q psy11659        471 DDIEGKLNIVNAKL--------------D-DVTQQVKMKTLENRKANQRILELEAELKERVTEDAA------GMKVKIFE  529 (684)
Q Consensus       471 ~~~~~~l~~L~~~L--------------e-~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~~~~------~lk~kl~e  529 (684)
                      +..+.. ..|...+              + +......+++...+.+..++..++.+++........      .+.+.+.+
T Consensus      1340 ee~e~~-~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d 1418 (1930)
T KOG0161|consen 1340 EEQEAK-NELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELED 1418 (1930)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            665433 3443333              2 222335678888888888999999988888543222      22334477


Q ss_pred             HHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHhhchhhhhchhh
Q psy11659        530 LQNEIKNLKEQINHQQEE-------HLEQGKLIEKLQDSITQKDSEIQDYEE---KNRKYIEKANSAFKLLDPTVQNVAA  599 (684)
Q Consensus       530 ~~~ele~~r~~l~~le~q-------~~~~~~~~~~l~~~L~~~e~el~~~e~---r~k~~~e~ak~~i~~l~~~~~~~~~  599 (684)
                      +..++++.+..+.+++.+       +..+++....+...++....+.+..++   +++..++.+.+.+.++...++.  +
T Consensus      1419 ~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~--l 1496 (1930)
T KOG0161|consen 1419 LQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKN--L 1496 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence            777887777666666655       344778889999999999999988877   5777788888888888888876  8


Q ss_pred             HHHHHHHHHhHHhhhhhHHHHHHHHhhH
Q psy11659        600 LNELKNLRKKNDDKDKMLDDLEKTLEKK  627 (684)
Q Consensus       600 ~~ei~~Lr~ql~e~e~~i~~LE~~~~~~  627 (684)
                      ..++.+|..++.+++++++.||+..+..
T Consensus      1497 ~~ei~dl~~~~~e~~k~v~elek~~r~l 1524 (1930)
T KOG0161|consen 1497 SQEIEDLEEQKDEGGKRVHELEKEKRRL 1524 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999987765

>KOG0161|consensus

Probab=99.55  E-value=1.3e-09  Score=134.22  Aligned_cols=398  Identities=20%  Similarity=0.259  Sum_probs=213.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy11659        188 ARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFV--EPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLE  265 (684)
Q Consensus       188 e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~~~--~~~~~~~~~L~~qleel~e~l~~~e~~~~~~~~~~~  265 (684)
                      ..-++..++.++..++.+|...+..+..|+..+..++.+.+.  +...+....+..++++++.++...      .+.+ .
T Consensus      1246 ~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e------~r~k-~ 1318 (1930)
T KOG0161|consen 1246 QLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEE------TREK-S 1318 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH-H
Confidence            344455556666666666666666777777777666665542  112334445555555555554321      1221 1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        266 IQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLD  345 (684)
Q Consensus       266 ~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kleel~~l~~~~~~Le~~~~~l~~~~~~  345 (684)
                      .+...+..++.+.+.|.      ..+.++.+....-...+++....+..++.|+++..  ....+++++....+...+..
T Consensus      1319 ~l~~~l~~l~~e~~~l~------e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~--~~~~eelee~kk~l~~~lq~ 1390 (1930)
T KOG0161|consen 1319 ALENALRQLEHELDLLR------EQLEEEQEAKNELERKLSKANAELAQWKKKFEEEV--LQRLEELEELKKKLQQRLQE 1390 (1930)
T ss_pred             HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHH
Confidence            22223333333222222      11112222222223355677777788888877542  23466677777777766666


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11659        346 LEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQ  425 (684)
Q Consensus       346 LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~~q~~  425 (684)
                      +++.+..++.....++..+.   .++..+.......+........+..++....+-+.......+.+...   ++.++..
T Consensus      1391 ~qe~~e~~~~~~~~Lek~k~---~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~E---ld~aq~e 1464 (1930)
T KOG0161|consen 1391 LEEQIEAANAKNASLEKAKN---RLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAE---LDAAQRE 1464 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence            66666665333333332222   22222222211111111111111111111111111111111111111   1111101


Q ss_pred             ccchhhhhhcccccccccccC----ChHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy11659        426 QSKSAELNTLGENLDLSEDSV----PITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKA  501 (684)
Q Consensus       426 ~~~~~~l~~~~~~~~~~~e~~----~~~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l  501 (684)
                      ...            .+++.+    .+.++.+.+..+.++|+.|.        .++.+|...+.++++.+++|++..+.+
T Consensus      1465 ~r~------------~~tel~kl~~~lee~~e~~e~l~renk~l~--------~ei~dl~~~~~e~~k~v~elek~~r~l 1524 (1930)
T KOG0161|consen 1465 LRQ------------LSTELQKLKNALEELLEQLEELRRENKNLS--------QEIEDLEEQKDEGGKRVHELEKEKRRL 1524 (1930)
T ss_pred             HHH------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000            001111    25777889999999999999        999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh----hHhHHH-------------HhHHHHHHHHHHHHH----HHHHHHHhhhhHHHHHHHHHH
Q psy11659        502 NQRILELEAELKERVTE----DAAGMK-------------VKIFELQNEIKNLKE----QINHQQEEHLEQGKLIEKLQD  560 (684)
Q Consensus       502 ~~~i~eLq~qle~l~~~----~~~~lk-------------~kl~e~~~ele~~r~----~l~~le~q~~~~~~~~~~l~~  560 (684)
                      ..++.+|+.+++++...    ++..++             +++.+..++++..+.    .+..++..+++..+...++-.
T Consensus      1525 e~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r 1604 (1930)
T KOG0161|consen 1525 EQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALR 1604 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence            99999999999999532    222222             244666666666655    566667666666666667666


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhchh--------hHHHHHHHHHhHHhhhhhHHHHHHHHhh
Q psy11659        561 SITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVA--------ALNELKNLRKKNDDKDKMLDDLEKTLEK  626 (684)
Q Consensus       561 ~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~~--------~~~ei~~Lr~ql~e~e~~i~~LE~~~~~  626 (684)
                      .-++++.|+..++..+.......-++++.+..-+..+.        ...-.++++.++...++++..|+.+++.
T Consensus      1605 ~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~ee 1678 (1930)
T KOG0161|consen 1605 SKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEE 1678 (1930)
T ss_pred             hhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777777777777655555444444444433322211        2333566777777777777777776554

>PRK02224 chromosome segregation protein; Provisional

Probab=99.33  E-value=1.9e-06  Score=104.50  Aligned_cols=15  Identities=13%  Similarity=0.237  Sum_probs=8.3

Q ss_pred             hHHHHHHHHHhHHhh
Q psy11659        599 ALNELKNLRKKNDDK  613 (684)
Q Consensus       599 ~~~ei~~Lr~ql~e~  613 (684)
                      +..++.+++.++.+.
T Consensus       625 ~~~~l~~~r~~i~~l  639 (880)
T PRK02224        625 RRERLAEKRERKREL  639 (880)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344556666666554

>PRK02224 chromosome segregation protein; Provisional

Probab=99.22  E-value=9.1e-06  Score=98.56  Aligned_cols=29  Identities=14%  Similarity=0.217  Sum_probs=16.3

Q ss_pred             hHHHHHHHHHhHHhhhhhHHHHHHHHhhH
Q psy11659        599 ALNELKNLRKKNDDKDKMLDDLEKTLEKK  627 (684)
Q Consensus       599 ~~~ei~~Lr~ql~e~e~~i~~LE~~~~~~  627 (684)
                      +..++..+...+......+..++..+...
T Consensus       651 l~~~~~~~~~~~~~l~~~l~~~~~~~~~l  679 (880)
T PRK02224        651 AREDKERAEEYLEQVEEKLDELREERDDL  679 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555655655555556555554

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.18  E-value=1.5e-06  Score=108.60  Aligned_cols=58  Identities=12%  Similarity=0.138  Sum_probs=44.5

Q ss_pred             HHHHHHHHH----HHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy11659        530 LQNEIKNLK----EQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAF  587 (684)
Q Consensus       530 ~~~ele~~r----~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i  587 (684)
                      +.++|+.+.    +++.++..+++|+...+..|...+..++..++..-.+.+..|..+...+
T Consensus       980 aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f 1041 (1179)
T TIGR02168       980 KIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQV 1041 (1179)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777777    8999999999999999999999999999999843322166666555443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK03918 chromosome segregation protein; Provisional

Probab=99.18  E-value=4.4e-05  Score=92.71  Aligned_cols=34  Identities=26%  Similarity=0.394  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        259 DYRIKLEIQSKQMEDLELKLNSLEETAGEARYLK  292 (684)
Q Consensus       259 ~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~  292 (684)
                      .+...+..++.++..+..+...+......+..++
T Consensus       256 ~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~l~  289 (880)
T PRK03918        256 KLEEKIRELEERIEELKKEIEELEEKVKELKELK  289 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444444444444443333333333

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.17  E-value=2e-06  Score=107.63  Aligned_cols=77  Identities=12%  Similarity=0.166  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy11659        499 RKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRK  578 (684)
Q Consensus       499 ~~l~~~i~eLq~qle~l~~~~~~~lk~kl~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~  578 (684)
                      ..+..++..++..+..+++.   ++     .+..+|+.+.+++.++..+++++...+..+...+..++..+.   ..|..
T Consensus       954 ~~l~~~l~~l~~~i~~l~~v---N~-----~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~---~~f~~ 1022 (1164)
T TIGR02169       954 EDVQAELQRVEEEIRALEPV---NM-----LAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKR---EVFME 1022 (1164)
T ss_pred             HHHHHHHHHHHHHHHHcCCC---Ch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence            34555666666666666543   44     677999999999999999999999999999999999988776   55666


Q ss_pred             HHHHHHHH
Q psy11659        579 YIEKANSA  586 (684)
Q Consensus       579 ~~e~ak~~  586 (684)
                      .|..+...
T Consensus      1023 ~f~~~~~~ 1030 (1164)
T TIGR02169      1023 AFEAINEN 1030 (1164)
T ss_pred             HHHHHHHH
Confidence            65555443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.14  E-value=6.2e-12  Score=148.73  Aligned_cols=394  Identities=22%  Similarity=0.287  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CccccchHHHHHHHHHHHHHHHHHhhhHHHH
Q psy11659        183 QTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFV--EPTNKGNSSMRRQMDALKEELFKAESARDDY  260 (684)
Q Consensus       183 ~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~~~--~~~~~~~~~L~~qleel~e~l~~~e~~~~~~  260 (684)
                      ..+..+..++..++.+.++.+.+|...+.+|..|+..|...+.+.+.  +...+....|..+|++++..+...-..+.  
T Consensus       183 K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~--  260 (859)
T PF01576_consen  183 KQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQ--  260 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhh--
Confidence            34445666677888888999999999999999999999999987774  33345566777888887777653222222  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        261 RIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILR----ETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKN  336 (684)
Q Consensus       261 ~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr----~~~~~~~k~e~~le~~k~kleel~~l~~~~~~Le~~~  336 (684)
                           .+...+..+...++          .|++.++.-.    ..-..+.++..++..++++++.-.  ...+..+++..
T Consensus       261 -----~L~~~l~~le~e~~----------~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~--~~~~EelEeaK  323 (859)
T PF01576_consen  261 -----ALEKQLRQLEHELE----------QLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEA--EQRTEELEEAK  323 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----hhHHHHHHHHHHHH----------HHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh--hhhHHHHHHHH
Confidence                 22233333332222          2222222111    111245567778888888877422  23355566555


Q ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        337 LSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETN  416 (684)
Q Consensus       337 ~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~  416 (684)
                      ..+...+..+.+.+.                        +...++..++..+.+|...+.++..++++.......|....
T Consensus       324 KkL~~~L~el~e~le------------------------~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKq  379 (859)
T PF01576_consen  324 KKLERKLQELQEQLE------------------------EANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQ  379 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555444444433                        33444555666666677777777777777776666666665


Q ss_pred             HHHHHH----hhhccc-hhhhhhccc-ccccccccC----ChHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHH
Q psy11659        417 EELKCC----QLQQSK-SAELNTLGE-NLDLSEDSV----PITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDD  486 (684)
Q Consensus       417 ~eL~~~----q~~~~~-~~~l~~~~~-~~~~~~e~~----~~~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~  486 (684)
                      ..|...    +..... ..+++.+.. ....+++++    .+.++...+..++++|+.|.        .+|.+|...+++
T Consensus       380 r~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~--------~El~dl~~q~~~  451 (859)
T PF01576_consen  380 RKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQ--------DELEDLTSQLDD  451 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--------Hhhccchhhhhh
Confidence            555321    100000 011111100 011122332    25788899999999999998        899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------hHhHH----HHhHHHHHHHHHHHHH----HHHHHH
Q psy11659        487 VTQQVKMKTLENRKANQRILELEAELKERVTE-------------DAAGM----KVKIFELQNEIKNLKE----QINHQQ  545 (684)
Q Consensus       487 ~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~-------------~~~~l----k~kl~e~~~ele~~r~----~l~~le  545 (684)
                      +++.++.|+..++.+..++.+++.+++++...             ....+    .++|.+..++++.+|.    .+..|+
T Consensus       452 ~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le  531 (859)
T PF01576_consen  452 AGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLE  531 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHH
Confidence            99999999999999999999999999998311             12222    2345666677777754    778888


Q ss_pred             HhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhchh--------hHHHHHHHHHhHHhhhhhH
Q psy11659        546 EEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVA--------ALNELKNLRKKNDDKDKML  617 (684)
Q Consensus       546 ~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~~--------~~~ei~~Lr~ql~e~e~~i  617 (684)
                      ..++...+....+....++++.++..++.++........+.++.+..-+..+.        .....++++.++...++++
T Consensus       532 ~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~  611 (859)
T PF01576_consen  532 AELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRL  611 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            88887777777778888888888887766543333222222222222111110        2223555666666666777


Q ss_pred             HHHHHHHhhH
Q psy11659        618 DDLEKTLEKK  627 (684)
Q Consensus       618 ~~LE~~~~~~  627 (684)
                      ..|..++...
T Consensus       612 ~~l~~elee~  621 (859)
T PF01576_consen  612 RALQAELEEL  621 (859)
T ss_dssp             ----------
T ss_pred             HHHHHHHHHH
Confidence            6666665543

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.12  E-value=8.1e-06  Score=101.15  Aligned_cols=80  Identities=20%  Similarity=0.291  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy11659        500 KANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKY  579 (684)
Q Consensus       500 ~l~~~i~eLq~qle~l~~~~~~~lk~kl~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~  579 (684)
                      .+..++..++..+..++++   ++     .|.++|+...++++++..+++++...+..+...+.+++...+   .+|...
T Consensus       946 ~~~~~i~~le~~i~~lg~V---N~-----~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~---~~f~~~ 1014 (1163)
T COG1196         946 ELEREIERLEEEIEALGPV---NL-----RAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKR---ERFKET 1014 (1163)
T ss_pred             HHHHHHHHHHHHHHhccCC---Ch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            4556666666666666655   34     788999999999999999999999999999999999999988   788888


Q ss_pred             HHHHHHHHhhc
Q psy11659        580 IEKANSAFKLL  590 (684)
Q Consensus       580 ~e~ak~~i~~l  590 (684)
                      |..+..-...+
T Consensus      1015 f~~In~~F~~i 1025 (1163)
T COG1196        1015 FDKINENFSEI 1025 (1163)
T ss_pred             HHHHHHHHHHH
Confidence            88777665544

>TIGR00606 rad50 rad50

Probab=99.07  E-value=0.00015  Score=91.23  Aligned_cols=89  Identities=9%  Similarity=0.120  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCccccchHHHHHHHHHHHHHHHHHhhhH
Q psy11659        179 VAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENF-VEPTNKGNSSMRRQMDALKEELFKAESAR  257 (684)
Q Consensus       179 ~~~l~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~~-~~~~~~~~~~L~~qleel~e~l~~~e~~~  257 (684)
                      ...+..+....+.+...+..++..+..+..+...+..++......+.+.. ...-...+..++..++.....+...++..
T Consensus       583 ~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~  662 (1311)
T TIGR00606       583 SKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGAT  662 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666777777777777788888888888888887777776321 11111244555566666655555444444


Q ss_pred             HHHHHHHHHH
Q psy11659        258 DDYRIKLEIQ  267 (684)
Q Consensus       258 ~~~~~~~~~l  267 (684)
                      .-|...++..
T Consensus       663 ~~~~k~ie~a  672 (1311)
T TIGR00606       663 AVYSQFITQL  672 (1311)
T ss_pred             HHHHHHHHHH
Confidence            4444443333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00606 rad50 rad50

Probab=99.05  E-value=0.00024  Score=89.37  Aligned_cols=43  Identities=14%  Similarity=0.249  Sum_probs=25.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHH
Q psy11659        448 ITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLEN  498 (684)
Q Consensus       448 ~~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~  498 (684)
                      +.++...+..++.+...++        .++..++...+.....+..|+...
T Consensus       824 ~~ele~ei~~~~~el~~l~--------~~~e~l~~e~e~~~~eI~~Lq~ki  866 (1311)
T TIGR00606       824 VQQVNQEKQEKQHELDTVV--------SKIELNRKLIQDQQEQIQHLKSKT  866 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4777788888777777776        444455555555444444443333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK03918 chromosome segregation protein; Provisional

Probab=99.03  E-value=0.00025  Score=86.21  Aligned_cols=14  Identities=21%  Similarity=0.477  Sum_probs=7.0

Q ss_pred             CHHHHHHHHHHHHH
Q psy11659        111 DAKELARLMQLILG  124 (684)
Q Consensus       111 d~~el~~ll~lvl~  124 (684)
                      +|.+..+++.=++|
T Consensus       143 ~~~~r~~~~~~~~~  156 (880)
T PRK03918        143 SDESREKVVRQILG  156 (880)
T ss_pred             CcHHHHHHHHHHhC
Confidence            34555555544444

>KOG4674|consensus

Probab=99.01  E-value=0.00012  Score=89.80  Aligned_cols=164  Identities=18%  Similarity=0.268  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhh--hhHhHHHHhH
Q psy11659        453 QKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLEN---RKANQRILELEAELKERVT--EDAAGMKVKI  527 (684)
Q Consensus       453 ~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~---~~l~~~i~eLq~qle~l~~--~~~~~lk~kl  527 (684)
                      .++.-+.+||..|+        .+++.+...++++.+.....+...   ...-.++..+...+..+..  +....|+.-+
T Consensus      1167 tk~~~lk~e~~~L~--------qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~ 1238 (1822)
T KOG4674|consen 1167 TKLDTLKRENARLK--------QQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREEN 1238 (1822)
T ss_pred             hhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence            34455666666666        565566666666666555555444   2223344444444444421  1122222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHhhchhhhhchhhHHHHH
Q psy11659        528 FELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEE---KNRKYIEKANSAFKLLDPTVQNVAALNELK  604 (684)
Q Consensus       528 ~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~---r~k~~~e~ak~~i~~l~~~~~~~~~~~ei~  604 (684)
                      ......+..++..+..+.....-+...+.++...+.....++.-++.   +|+..+.....-.+..++..-. .+..++.
T Consensus      1239 ~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~-kL~~ei~ 1317 (1822)
T KOG4674|consen 1239 EANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYE-KLKSEIS 1317 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH-HHHHHHH
Confidence            12222222222233332222222333344444444444444433332   4444444444443333332111 2344555


Q ss_pred             HHHHhHHhhhhhHHHHHHHHh
Q psy11659        605 NLRKKNDDKDKMLDDLEKTLE  625 (684)
Q Consensus       605 ~Lr~ql~e~e~~i~~LE~~~~  625 (684)
                      .|.+-+..+++.+..+...+.
T Consensus      1318 ~Lk~el~~ke~~~~el~~~~~ 1338 (1822)
T KOG4674|consen 1318 RLKEELEEKENLIAELKKELN 1338 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            566666655555555555433

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.97  E-value=4.5e-05  Score=95.57  Aligned_cols=58  Identities=21%  Similarity=0.333  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q psy11659        529 ELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKL  589 (684)
Q Consensus       529 e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~  589 (684)
                      .+...|+.+..++.+|....+++...+.++...+........   +.|...++....+...
T Consensus       990 ~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~---~~F~~v~~~f~~~F~~ 1047 (1179)
T TIGR02168       990 AAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREAR---ERFKDTFDQVNENFQR 1047 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            344677777788888888877777777777777777764443   3444444444444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.94  E-value=0.00014  Score=84.43  Aligned_cols=48  Identities=21%  Similarity=0.310  Sum_probs=32.2

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy11659        539 EQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSA  586 (684)
Q Consensus       539 ~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~  586 (684)
                      ..+..+...++.+..++...+..|...+..+.+++.-.++.++++..+
T Consensus       671 ~~l~k~~~Eld~l~~qL~ssq~~L~e~d~~L~~le~Errk~lEE~l~m  718 (775)
T PF10174_consen  671 AALEKLRQELDQLKAQLESSQQSLMERDQELNALEAERRKQLEEVLEM  718 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444555556667777777888888887777777877777665

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.90  E-value=0.00045  Score=80.33  Aligned_cols=47  Identities=19%  Similarity=0.255  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11659        181 ELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQEN  227 (684)
Q Consensus       181 ~l~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~  227 (684)
                      +.-++..+.+.+...+.+++..+..++...+....++..|...+...
T Consensus       122 E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~  168 (775)
T PF10174_consen  122 ERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSK  168 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            34444455555666666677777777777777777888887777533

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0971|consensus

Probab=98.89  E-value=5e-05  Score=85.63  Aligned_cols=56  Identities=11%  Similarity=0.074  Sum_probs=32.9

Q ss_pred             hHHHHHHHHHhHHhhhhhHHHHHHHHhhH------HHHHHHHHHH--HHHHHHHHHHHhHhhhh
Q psy11659        599 ALNELKNLRKKNDDKDKMLDDLEKTLEKK------EQQEKLIATA--FYNLALQKQRQTADNRL  654 (684)
Q Consensus       599 ~~~ei~~Lr~ql~e~e~~i~~LE~~~~~~------~~E~~l~~~a--~y~~~~~~~~~~~~~r~  654 (684)
                      +..-+..|..|+++...+...++.+.-.-      ..-+|++.++  -|--....|=++|+=+.
T Consensus       530 fRelva~Lqdqlqe~~dq~~Sseees~q~~s~~~et~dyk~~fa~skayaraie~QlrqiEv~~  593 (1243)
T KOG0971|consen  530 FRELVAHLQDQLQELTDQQESSEEESQQPPSVDPETFDYKIKFAESKAYARAIEMQLRQIEVAQ  593 (1243)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCchhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            55667778888887777777776664432      3445555544  44444444444555443

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.88  E-value=0.00031  Score=77.48  Aligned_cols=12  Identities=25%  Similarity=0.252  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHH
Q psy11659         77 KKINEGIVDYFQ   88 (684)
Q Consensus        77 ~~i~~~i~~y~~   88 (684)
                      |.=|+++.+||.
T Consensus        44 KVGw~s~rdY~T   55 (546)
T PF07888_consen   44 KVGWSSTRDYYT   55 (546)
T ss_pred             ecCCCchhheee
Confidence            344567778873

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0976|consensus

Probab=98.88  E-value=0.00037  Score=77.81  Aligned_cols=122  Identities=10%  Similarity=0.120  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHhhhh--HhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy11659        503 QRILELEAELKERVTED--AAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYI  580 (684)
Q Consensus       503 ~~i~eLq~qle~l~~~~--~~~lk~kl~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~  580 (684)
                      ....+++.|++.+++.-  ....|+.-..+..|+.+..+.++-|...+.+........+....-.+..++...++..+-+
T Consensus       386 ~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv  465 (1265)
T KOG0976|consen  386 ELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMV  465 (1265)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHH
Confidence            33344555555554331  1111222234444455544444444444333333444444333333444443333333334


Q ss_pred             HHHHHHHhhchhhhhchhhHHHHHHHHHhHHhhhhhHHHHHHHHhhH
Q psy11659        581 EKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKK  627 (684)
Q Consensus       581 e~ak~~i~~l~~~~~~~~~~~ei~~Lr~ql~e~e~~i~~LE~~~~~~  627 (684)
                      ...+.....+..+.+   +..++..|+..+.--.++|+.|+.++.+.
T Consensus       466 ~rir~l~~sle~qrK---Veqe~emlKaen~rqakkiefmkEeiQet  509 (1265)
T KOG0976|consen  466 DRIRALMDSLEKQRK---VEQEYEMLKAENERQAKKIEFMKEEIQET  509 (1265)
T ss_pred             HHHHHHhhChhhhcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444433222   67788888888887788888888887776

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=98.80  E-value=8.7e-10  Score=130.66  Aligned_cols=175  Identities=21%  Similarity=0.298  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhhhhcccchh-------------hhHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659        451 LRQKLVRLTHENNMLQMNQKDDIE-------------GKLNIVNAKLD-DVTQQVKMKTLENRKANQRILELEAELKERV  516 (684)
Q Consensus       451 l~~~l~~Le~Enk~Lr~~~~~~~~-------------~~l~~L~~~Le-~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~  516 (684)
                      +...+..+++++..|+.+.++...             .++..+...++ +.......|+...+.+..++.+++.+++...
T Consensus       262 L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~  341 (859)
T PF01576_consen  262 LEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEAN  341 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666666666666655543321             12222222333 2223356778888888888888888888885


Q ss_pred             hhhHhHH--HHhH----HHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHH
Q psy11659        517 TEDAAGM--KVKI----FELQNEIKNLKEQINHQQEE-------HLEQGKLIEKLQDSITQKDSEIQDYEE---KNRKYI  580 (684)
Q Consensus       517 ~~~~~~l--k~kl----~e~~~ele~~r~~l~~le~q-------~~~~~~~~~~l~~~L~~~e~el~~~e~---r~k~~~  580 (684)
                      ......-  +.+|    .++..++++.+.....|+++       +.+|..+...+...+.....+.+.+.+   .++..+
T Consensus       342 ~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~l  421 (859)
T PF01576_consen  342 AKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNEL  421 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence            4432221  2333    77777788877766666654       344677778888888888888887777   578888


Q ss_pred             HHHHHHHhhchhhhhchhhHHHHHHHHHhHHhhhhhHHHHHHHHhhH
Q psy11659        581 EKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKK  627 (684)
Q Consensus       581 e~ak~~i~~l~~~~~~~~~~~ei~~Lr~ql~e~e~~i~~LE~~~~~~  627 (684)
                      +....-+..++..+..  +..+|.+|..++++.++.++.|++..+..
T Consensus       422 ee~~e~~e~lere~k~--L~~El~dl~~q~~~~~k~v~eLek~kr~L  466 (859)
T PF01576_consen  422 EELQEQLEELERENKQ--LQDELEDLTSQLDDAGKSVHELEKAKRRL  466 (859)
T ss_dssp             -----------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHH--HHHhhccchhhhhhhccchHHHHHHHHHH
Confidence            8888888888888876  88999999999999999999998887764

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK01156 chromosome segregation protein; Provisional

Probab=98.75  E-value=0.002  Score=78.34  Aligned_cols=32  Identities=19%  Similarity=0.297  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        389 KKLQEKVTSLQREKEKLIVERDSLKETNEELK  420 (684)
Q Consensus       389 ~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~  420 (684)
                      ..+..++..+..++..+..++..+...+.++.
T Consensus       412 ~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~  443 (895)
T PRK01156        412 NEINVKLQDISSKVSSLNQRIRALRENLDELS  443 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555555555555554

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.73  E-value=0.00082  Score=83.63  Aligned_cols=40  Identities=15%  Similarity=0.180  Sum_probs=16.6

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy11659        541 INHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYI  580 (684)
Q Consensus       541 l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~  580 (684)
                      ++.....++.+..+...+..+++.+..-+..+..+.+..|
T Consensus       972 ~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f 1011 (1163)
T COG1196         972 YEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERF 1011 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444444443333333333

>KOG0933|consensus

Probab=98.72  E-value=0.00051  Score=78.97  Aligned_cols=162  Identities=22%  Similarity=0.299  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        259 DYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVE------KYEGIIETYKKKAEELVDLKKQVKQL  332 (684)
Q Consensus       259 ~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~------k~e~~le~~k~kleel~~l~~~~~~L  332 (684)
                      +.+.++...++++..+..++..+...+..++.|+.+++...|...-+.      .....+..++.-++++.++..++++.
T Consensus       681 ~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~  760 (1174)
T KOG0933|consen  681 QAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEK  760 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666778888888888888888999999999988877654432      33455567777777788888899988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        333 ESKNLSYIQQTLDLEEELKKNGNW-KSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDS  411 (684)
Q Consensus       333 e~~~~~l~~~~~~LEeel~~~~~~-r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~  411 (684)
                      ..........+..+|..+..+..- ...+..+.+.+..+..++.+.....++-+.+...++-+++.++.+..........
T Consensus       761 ~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~  840 (1174)
T KOG0933|consen  761 ERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQ  840 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888899999999998887653 3467777778888888888888888888888888888888888887777777777


Q ss_pred             HHHHHHHHH
Q psy11659        412 LKETNEELK  420 (684)
Q Consensus       412 L~e~~~eL~  420 (684)
                      +...+..|.
T Consensus       841 ~~~~~~~l~  849 (1174)
T KOG0933|consen  841 LEKQISSLK  849 (1174)
T ss_pred             HHHHHHHHH
Confidence            777766665

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.68  E-value=0.001  Score=73.47  Aligned_cols=39  Identities=23%  Similarity=0.300  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        184 TVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEE  222 (684)
Q Consensus       184 ~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~  222 (684)
                      ....++.+|.+.+..|+.++..|..+...|..++...+.
T Consensus       147 ~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~e  185 (546)
T PF07888_consen  147 ECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEE  185 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555555555555555555555544433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG4643|consensus

Probab=98.59  E-value=0.0034  Score=72.37  Aligned_cols=145  Identities=18%  Similarity=0.242  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhc-
Q psy11659        357 KSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTL-  435 (684)
Q Consensus       357 r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~~q~~~~~~~~l~~~-  435 (684)
                      ....+.++.+++.+..+-..     -.++.++-.++.++.++..+++..+.....|.+.+.-|...+.+-....++.+. 
T Consensus       277 leekeMLeeQLq~lrarse~-----~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~  351 (1195)
T KOG4643|consen  277 LEEKEMLEEQLQKLRARSEG-----ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIF  351 (1195)
T ss_pred             HHHHHHHHHHHHHHHhcccc-----CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhh
Confidence            44455555555555433221     467888999999999999999988888888888887776433222221122110 


Q ss_pred             -ccccccccccCC--hHHH-HHHHHHHHHHHHHhhhhcccchhhhHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        436 -GENLDLSEDSVP--ITEL-RQKLVRLTHENNMLQMNQKDDIEGKLNIVNA-KLDDVTQQVKMKTLENRKANQRILELEA  510 (684)
Q Consensus       436 -~~~~~~~~e~~~--~~el-~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~-~Le~~~~~~~~Le~~~~~l~~~i~eLq~  510 (684)
                       .+... ..+...  -.+| ..++.++.-||..+-        ..+.++++ .++....+.-+|+++.+.+..++..|+.
T Consensus       352 se~~E~-en~Sl~~e~eqLts~ralkllLEnrrlt--------~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Lee  422 (1195)
T KOG4643|consen  352 SENEEL-ENESLQVENEQLTSDRALKLLLENRRLT--------GTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEE  422 (1195)
T ss_pred             hcchhh-hhhhHHHHHHHhhhHHHHHHHHHhHHHH--------HHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHH
Confidence             00000 000000  0111 134445555565554        44444432 3445555555666655555555555555


Q ss_pred             HHHHH
Q psy11659        511 ELKER  515 (684)
Q Consensus       511 qle~l  515 (684)
                      .+..+
T Consensus       423 ri~ql  427 (1195)
T KOG4643|consen  423 RINQL  427 (1195)
T ss_pred             HHHHH
Confidence            55544

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.59  E-value=0.0034  Score=72.13  Aligned_cols=36  Identities=19%  Similarity=0.127  Sum_probs=26.2

Q ss_pred             HHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy11659        529 ELQN-EIKNLKEQINHQQEEHLEQGKLIEKLQDSITQ  564 (684)
Q Consensus       529 e~~~-ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~  564 (684)
                      ++.. +++....+++++..+.+++......++..+..
T Consensus       472 ~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy  508 (569)
T PRK04778        472 EAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY  508 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444 88888889999988888877666666655544

>KOG4674|consensus

Probab=98.50  E-value=0.01  Score=73.61  Aligned_cols=181  Identities=23%  Similarity=0.301  Sum_probs=83.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        234 KGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKL----NSLEETAGEARYLKDEVDILRETAEKVEKYE  309 (684)
Q Consensus       234 ~~~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~----~~L~~~a~~~~~L~deld~lr~~~~~~~k~e  309 (684)
                      .++..|..-++.++.+...++.....+...+...+..+..+..++    ..+..+..++..|+.+-..+++.-.++   .
T Consensus       689 ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL---~  765 (1822)
T KOG4674|consen  689 EKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERL---S  765 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence            345555666666666555555444444444433333332222222    122223344555555555555433322   2


Q ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH----HHHHHHHHHH
Q psy11659        310 GIIETYKKKAEELV----DLKKQVKQLES----KNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQM----SELYNQFNEE  377 (684)
Q Consensus       310 ~~le~~k~kleel~----~l~~~~~~Le~----~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi----~~l~~~l~e~  377 (684)
                      .+++.|......+.    .+......++.    ....+..++..|+.++..+   +..+......+    ..+...+...
T Consensus       766 ~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~l---k~klq~~~~~~r~l~~~~~~~l~~~  842 (1822)
T KOG4674|consen  766 QELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKL---KKKLQEKSSDLRELTNSLEKQLENA  842 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            33333332222221    11111111111    1223445555555555555   33333333222    2333445555


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        378 TKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK  420 (684)
Q Consensus       378 ~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~  420 (684)
                      ...++.+...+..+...+..+....+.+..+...|...+....
T Consensus       843 ~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~  885 (1822)
T KOG4674|consen  843 QNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAK  885 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            5666666666666666666666666666666666666665544

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.47  E-value=0.0011  Score=67.38  Aligned_cols=224  Identities=20%  Similarity=0.243  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc--cccchHHHHHHHHHHHHHHHHHhhhHHH
Q psy11659        182 LQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEP--TNKGNSSMRRQMDALKEELFKAESARDD  259 (684)
Q Consensus       182 l~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~~~~~--~~~~~~~L~~qleel~e~l~~~e~~~~~  259 (684)
                      +..+..+.|....++..+...+............++..|..++...+...  +..++......|+.+.......+..+..
T Consensus         3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~   82 (237)
T PF00261_consen    3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKV   82 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556677888888888888888777778888888888888777665322  1233444444555444444333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        260 YRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSY  339 (684)
Q Consensus       260 ~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kleel~~l~~~~~~Le~~~~~l  339 (684)
                      +..+.......+..+..++......+.   .....++..   ..++..++..++....+.+.   +..++..|+......
T Consensus        83 lE~r~~~~eeri~~lE~~l~ea~~~~e---e~e~k~~E~---~rkl~~~E~~Le~aEeR~e~---~E~ki~eLE~el~~~  153 (237)
T PF00261_consen   83 LENREQSDEERIEELEQQLKEAKRRAE---EAERKYEEV---ERKLKVLEQELERAEERAEA---AESKIKELEEELKSV  153 (237)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHH---HHHHHHHHC---HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHhh---hchhHHHHHHHHHHH
Confidence            333322222222223222222221111   111111111   22344445555555555333   346777777777777


Q ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        340 IQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNE  417 (684)
Q Consensus       340 ~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~  417 (684)
                      ...+..++.....+   -...+.|..+|..|..++.+...+++..+..+..|...+..++.++.........+...++
T Consensus       154 ~~~lk~lE~~~~~~---~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld  228 (237)
T PF00261_consen  154 GNNLKSLEASEEKA---SEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD  228 (237)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777666655   5667888888999999999988888888888888888888888887776666666555443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0976|consensus

Probab=98.45  E-value=0.0061  Score=68.45  Aligned_cols=43  Identities=12%  Similarity=-0.017  Sum_probs=22.0

Q ss_pred             HHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        458 LTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILEL  508 (684)
Q Consensus       458 Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eL  508 (684)
                      |..+|+.|.        .++..++-.|-++++....+......+..+...+
T Consensus       321 lh~enmklt--------rqkadirc~LlEarrk~egfddk~~eLEKkrd~a  363 (1265)
T KOG0976|consen  321 LHLENMKLT--------RQKADIRCALLEARRKAEGFDDKLNELEKKRDMA  363 (1265)
T ss_pred             HHHHHHHHH--------HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence            455666665        5555555555555555544444444444444333

>KOG0971|consensus

Probab=98.44  E-value=0.0074  Score=68.79  Aligned_cols=19  Identities=16%  Similarity=0.239  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHhhchhh
Q psy11659        575 KNRKYIEKANSAFKLLDPT  593 (684)
Q Consensus       575 r~k~~~e~ak~~i~~l~~~  593 (684)
                      +|+..+....+.+..+.+.
T Consensus       529 KfRelva~Lqdqlqe~~dq  547 (1243)
T KOG0971|consen  529 KFRELVAHLQDQLQELTDQ  547 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            5666666666666655553

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.42  E-value=0.0043  Score=65.86  Aligned_cols=59  Identities=29%  Similarity=0.392  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        363 YKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKC  421 (684)
Q Consensus       363 ~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~  421 (684)
                      |+.++.++..........+.....++..++..+..+..+++.+......|+..+.+++.
T Consensus       193 y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~  251 (312)
T PF00038_consen  193 YQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQ  251 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHH
Confidence            56667777777666666777777777888888888888888887777777777777753

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.42  E-value=0.0087  Score=68.77  Aligned_cols=31  Identities=10%  Similarity=0.097  Sum_probs=15.1

Q ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy11659        235 GNSSMRRQMDALKEELFKAESARDDYRIKLE  265 (684)
Q Consensus       235 ~~~~L~~qleel~e~l~~~e~~~~~~~~~~~  265 (684)
                      ++...+..+..+...+...+.........+.
T Consensus        99 ~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~  129 (569)
T PRK04778         99 RFRKAKHEINEIESLLDLIEEDIEQILEELQ  129 (569)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555544444444444433

>PRK01156 chromosome segregation protein; Provisional

Probab=98.39  E-value=0.016  Score=70.61  Aligned_cols=9  Identities=11%  Similarity=0.324  Sum_probs=5.4

Q ss_pred             hHHhHHHHH
Q psy11659          8 QSELCNILL   16 (684)
Q Consensus         8 ~~~~~~~l~   16 (684)
                      |+.+.+|+.
T Consensus        36 KSsileAI~   44 (895)
T PRK01156         36 KSSIVDAIR   44 (895)
T ss_pred             HHHHHHHHH
Confidence            456666655

>KOG0977|consensus

Probab=98.33  E-value=0.0061  Score=67.52  Aligned_cols=72  Identities=17%  Similarity=0.267  Sum_probs=48.1

Q ss_pred             hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11659        475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLE  550 (684)
Q Consensus       475 ~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~~~~~lk~kl~e~~~ele~~r~~l~~le~q~~~  550 (684)
                      +++..+...+...+.++.+|+..+..+..+|.+|..++.+..    ....+.|.+.+.++.++|++...+-.++..
T Consensus       296 EEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~----r~~e~~L~~kd~~i~~mReec~~l~~Elq~  367 (546)
T KOG0977|consen  296 EELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQ----RSFEQALNDKDAEIAKMREECQQLSVELQK  367 (546)
T ss_pred             HHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhh----hhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            455555666667777777778888888888888888777642    122344567777778888777776644433

>KOG0612|consensus

Probab=98.33  E-value=0.017  Score=68.33  Aligned_cols=58  Identities=12%  Similarity=0.287  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        239 MRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVD  296 (684)
Q Consensus       239 L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld  296 (684)
                      ++.++.+..+.+...+..+.++...+..++.++..++.+++.+......+..++.+++
T Consensus       492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le  549 (1317)
T KOG0612|consen  492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLE  549 (1317)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4555556666666666666666666666666666666666655544444444444444

>KOG0977|consensus

Probab=98.28  E-value=0.0043  Score=68.74  Aligned_cols=81  Identities=20%  Similarity=0.280  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        337 LSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETN  416 (684)
Q Consensus       337 ~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~  416 (684)
                      ..+...+..|.+++..+   +...+...+.......++......+..++.++..++.++..++.++.++..+...+...+
T Consensus       109 a~~e~ei~kl~~e~~el---r~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l  185 (546)
T KOG0977|consen  109 AKLEIEITKLREELKEL---RKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREEL  185 (546)
T ss_pred             HHHHHHHHHhHHHHHHH---HHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            33333344444443333   333333333333333344444444555555555566666666666666666666665555


Q ss_pred             HHHH
Q psy11659        417 EELK  420 (684)
Q Consensus       417 ~eL~  420 (684)
                      ..++
T Consensus       186 ~~~r  189 (546)
T KOG0977|consen  186 ARAR  189 (546)
T ss_pred             HHHH
Confidence            5443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.23  E-value=0.042  Score=68.76  Aligned_cols=42  Identities=17%  Similarity=0.290  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659        312 IETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKN  353 (684)
Q Consensus       312 le~~k~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~  353 (684)
                      ++.+...++.+..++.++..++.....+......++.+....
T Consensus       344 i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~  385 (1201)
T PF12128_consen  344 IEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKL  385 (1201)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555666566666666666666666666655555554443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.16  E-value=0.017  Score=61.28  Aligned_cols=51  Identities=25%  Similarity=0.243  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        369 ELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEEL  419 (684)
Q Consensus       369 ~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL  419 (684)
                      +++.++.........++.++..++..++.....+..+..++..|++.+.-+
T Consensus        86 ~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl  136 (312)
T PF00038_consen   86 DLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFL  136 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHH
Confidence            333444444444444555555555555555555555555555555544433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0250|consensus

Probab=98.14  E-value=0.011  Score=69.45  Aligned_cols=248  Identities=19%  Similarity=0.268  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH------HHHHHHHH
Q psy11659        240 RRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYL---KDEVDILRETA------EKVEKYEG  310 (684)
Q Consensus       240 ~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L---~deld~lr~~~------~~~~k~e~  310 (684)
                      -.+|++..+.+......++.....+..++.++..+..++.+....-.....+   .+.+..|+.+.      +....+.+
T Consensus       206 aT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~  285 (1074)
T KOG0250|consen  206 ATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNN  285 (1074)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3778888888887777788888888888888888877777666544433333   33333333321      12224444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy11659        311 IIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKK  390 (684)
Q Consensus       311 ~le~~k~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~  390 (684)
                      ..+..+.+-+.+..+...++.....+..+.......+.++..+   +...+....++..+...+.....+...++.+   
T Consensus       286 ~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~---~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~---  359 (1074)
T KOG0250|consen  286 QEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGEL---KDEVDAQDEEIEEARKDLDDLRREVNDLKEE---  359 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH---HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            4455555555555566666666666666666666666555544   4444444445555554444444333333333   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhcccccccccccCChHHHHHHHHHHHHHHHHhhhhcc
Q psy11659        391 LQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQK  470 (684)
Q Consensus       391 L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~~q~~~~~~~~l~~~~~~~~~~~e~~~~~el~~~l~~Le~Enk~Lr~~~~  470 (684)
                          +...+.....+....+.++..|..++..-.+... ..++...  .       .+..|..++..++..+..|+    
T Consensus       360 ----~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~-~~~~e~e--~-------k~~~L~~evek~e~~~~~L~----  421 (1074)
T KOG0250|consen  360 ----IREIENSIRKLKKEVDRLEKQIADLEKQTNNELG-SELEERE--N-------KLEQLKKEVEKLEEQINSLR----  421 (1074)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHH--H-------HHHHHHHHHHHHHHHHHHHH----
Confidence                3333333333334444444444444321000000 0000000  0       01233344444444444444    


Q ss_pred             cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        471 DDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKER  515 (684)
Q Consensus       471 ~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l  515 (684)
                          .++.++...+..........+.....+...+......+..+
T Consensus       422 ----~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~l  462 (1074)
T KOG0250|consen  422 ----EELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDL  462 (1074)
T ss_pred             ----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                44444444444444444455555566666666666666555

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=98.08  E-value=0.044  Score=63.26  Aligned_cols=75  Identities=24%  Similarity=0.368  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy11659        327 KQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEK  404 (684)
Q Consensus       327 ~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~  404 (684)
                      ....+|++.|-.++..+..|......+..++.++..+...+.-++.++.++..-.+-.+   +.|.+.++.++.+++.
T Consensus        97 ~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae---~qleEALesl~~EReq  171 (717)
T PF09730_consen   97 QDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAE---KQLEEALESLKSEREQ  171 (717)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            34467777788888888888777777777788888888888888888887765444333   3466777777766553

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.02  E-value=0.011  Score=60.09  Aligned_cols=160  Identities=21%  Similarity=0.302  Sum_probs=83.0

Q ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        235 GNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIET  314 (684)
Q Consensus       235 ~~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~  314 (684)
                      ++..++.+++.+.+.+...+..+.....+....+.++..++.+          +..+.++++....   ++......+..
T Consensus         2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rr----------i~~lE~~le~~ee---rL~~~~~kL~~   68 (237)
T PF00261_consen    2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRR----------IQLLEEELERAEE---RLEEATEKLEE   68 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHCCCHHHHC---CCCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhHHH---HHHHHHHHHHH
Confidence            3455666666666666555444444444444444444444433          3344444443322   11122222232


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy11659        315 YKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEK  394 (684)
Q Consensus       315 ~k~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~  394 (684)
                      ..+...+   ..+..+.++........++..|+.++..+          +....+....+.+...++..++..+.....+
T Consensus        69 ~e~~~de---~er~~k~lE~r~~~~eeri~~lE~~l~ea----------~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR  135 (237)
T PF00261_consen   69 AEKRADE---SERARKVLENREQSDEERIEELEQQLKEA----------KRRAEEAERKYEEVERKLKVLEQELERAEER  135 (237)
T ss_dssp             HHHHHHH---HCHHHHHHHHHHHHHHHHHHHCHHHHHHH----------HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333222   23455566666666666666666666555          3334455566666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        395 VTSLQREKEKLIVERDSLKETNEELK  420 (684)
Q Consensus       395 l~~le~e~e~l~~e~~~L~e~~~eL~  420 (684)
                      +..++.....+..++..+...+..|+
T Consensus       136 ~e~~E~ki~eLE~el~~~~~~lk~lE  161 (237)
T PF00261_consen  136 AEAAESKIKELEEELKSVGNNLKSLE  161 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhchhHHHHHHHHHHHHHHHHHhh
Confidence            66666666655555555555444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=98.01  E-value=0.021  Score=58.32  Aligned_cols=44  Identities=27%  Similarity=0.397  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy11659        357 KSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQR  400 (684)
Q Consensus       357 r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~  400 (684)
                      ....+.+++.+..++..+.+....++.+..+...++..+.++..
T Consensus       199 ~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k  242 (294)
T COG1340         199 FEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK  242 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444443

>KOG0996|consensus

Probab=98.00  E-value=0.073  Score=63.03  Aligned_cols=113  Identities=21%  Similarity=0.226  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhcCCCcc--ccchHHHHHHHHHHHHHHHHHhhhHH
Q psy11659        188 ARDQMAQRCMELDMQVSMLQEEKS-------CLVEEKRRLEERFQENFVEPT--NKGNSSMRRQMDALKEELFKAESARD  258 (684)
Q Consensus       188 e~d~l~~~~~el~~q~~~L~~e~~-------~l~~E~~~l~~~~~~~~~~~~--~~~~~~L~~qleel~e~l~~~e~~~~  258 (684)
                      ..+.+..+..+++.+-....+...       +|..+++..+...++.++.|.  ...+..++.++++|...+...+...+
T Consensus       385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~  464 (1293)
T KOG0996|consen  385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD  464 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666666555444444444       444444444444444444443  34455666666666665544433333


Q ss_pred             H----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q psy11659        259 D----YRIKLEIQSKQMEDLELKLNSLE----ETAGEARYLKDEVDILRE  300 (684)
Q Consensus       259 ~----~~~~~~~le~el~~l~~k~~~L~----~~a~~~~~L~deld~lr~  300 (684)
                      +    +..+-+....++..++.++..+.    ....+.+..+.+++.|..
T Consensus       465 e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~  514 (1293)
T KOG0996|consen  465 EILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLS  514 (1293)
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3    33333334444444444443222    223344455555555444

>KOG0995|consensus

Probab=97.99  E-value=0.046  Score=60.22  Aligned_cols=142  Identities=20%  Similarity=0.270  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy11659        264 LEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAE-ELVDLKKQVKQLESKNLSYIQQ  342 (684)
Q Consensus       264 ~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kle-el~~l~~~~~~Le~~~~~l~~~  342 (684)
                      ++.+++...++..++.+..+.......|+.....++....+..-+...+...+..+. .+..++..++..++.+..+...
T Consensus       237 ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~  316 (581)
T KOG0995|consen  237 IEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKE  316 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444433333333444444444444433333333333332222222 3444556666666666666666


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11659        343 TLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKL  405 (684)
Q Consensus       343 ~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l  405 (684)
                      ...|...++.-+-.-.+++....+...+.+.+.......+.+..+.-.+..+++..-.+.+..
T Consensus       317 ~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~  379 (581)
T KOG0995|consen  317 NDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKK  379 (581)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            666666665554444555555555555555555555555555555544444444444444333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.96  E-value=0.13  Score=64.82  Aligned_cols=113  Identities=13%  Similarity=0.098  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhccccccccc
Q psy11659        364 KKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSE  443 (684)
Q Consensus       364 k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~~q~~~~~~~~l~~~~~~~~~~~  443 (684)
                      ...+..+...+.+...++..++.++..++.++..+...++.+..+...++..+..+...+.-+         |. +    
T Consensus       368 eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~---------~~-~----  433 (1486)
T PRK04863        368 NEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLC---------GL-P----  433 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CC-C----
Confidence            333444444444444455555566666666666666666666666666666666665432111         11 1    


Q ss_pred             ccCChHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHH
Q psy11659        444 DSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENR  499 (684)
Q Consensus       444 e~~~~~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~  499 (684)
                       .++..+|...+.........+.        .++..++..+.++......++....
T Consensus       434 -~~SdEeLe~~LenF~aklee~e--------~qL~elE~kL~~lea~leql~~~~~  480 (1486)
T PRK04863        434 -DLTADNAEDWLEEFQAKEQEAT--------EELLSLEQKLSVAQAAHSQFEQAYQ  480 (1486)
T ss_pred             -CCCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1222556666655555444444        4445555555555555544444443

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.92  E-value=0.019  Score=66.14  Aligned_cols=28  Identities=14%  Similarity=0.266  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        194 QRCMELDMQVSMLQEEKSCLVEEKRRLE  221 (684)
Q Consensus       194 ~~~~el~~q~~~L~~e~~~l~~E~~~l~  221 (684)
                      .++.+++.++..+..+...+..++..+.
T Consensus       174 ~~~~e~~~~i~~l~~~i~~l~~~i~~~~  201 (562)
T PHA02562        174 DKIRELNQQIQTLDMKIDHIQQQIKTYN  201 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444445555555444444444433

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.88  E-value=0.092  Score=60.21  Aligned_cols=164  Identities=14%  Similarity=0.275  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHH
Q psy11659        449 TELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKL--D-DVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKV  525 (684)
Q Consensus       449 ~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~L--e-~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~~~~~lk~  525 (684)
                      +.+...+..+...|+.|.        .++..+....  . ........+..+...+......+...+++.... .+.+..
T Consensus       309 ~~l~~~l~~~~~~~~~l~--------~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~-yS~i~~  379 (560)
T PF06160_consen  309 KELYEYLEHAKEQNKELK--------EELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVP-YSEIQE  379 (560)
T ss_pred             HHHHHHHHHHHHHHHHHH--------HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC-HHHHHH
Confidence            556677777777777776        4544444322  1 222333455555555555555555555554322 223333


Q ss_pred             hHHHHHHHHHH-------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHHHHHHhhchhh
Q psy11659        526 KIFELQNEIKN-------LKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDY-----EEKNRKYIEKANSAFKLLDPT  593 (684)
Q Consensus       526 kl~e~~~ele~-------~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~-----e~r~k~~~e~ak~~i~~l~~~  593 (684)
                      .+.+....+..       ....+..|...-...+.++..+...+..+.+-+...     -+.|..++..+.+.|..+...
T Consensus       380 ~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~  459 (560)
T PF06160_consen  380 ELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDE  459 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333       333333333222222334444444444444433211     013556666666666655554


Q ss_pred             hhchhhHHHHHHHHHhHHhhhhhHHHHHHH
Q psy11659        594 VQNVAALNELKNLRKKNDDKDKMLDDLEKT  623 (684)
Q Consensus       594 ~~~~~~~~ei~~Lr~ql~e~e~~i~~LE~~  623 (684)
                      ...  .+-.+..+..++......+..|...
T Consensus       460 L~~--~pinm~~v~~~l~~a~~~v~~L~~~  487 (560)
T PF06160_consen  460 LNQ--VPINMDEVNKQLEEAEDDVETLEEK  487 (560)
T ss_pred             Hhc--CCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            332  2223445555555555555555444

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG4673|consensus

Probab=97.86  E-value=0.083  Score=58.91  Aligned_cols=176  Identities=18%  Similarity=0.264  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy11659        188 ARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQ  267 (684)
Q Consensus       188 e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~~~~~~~~~~~~L~~qleel~e~l~~~e~~~~~~~~~~~~l  267 (684)
                      -++++.||+..+++.+..+..+++.+..|...+++.+...          -++..|.+..+.+..+...-+.+..+.-..
T Consensus       403 l~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~----------l~~DeLaEkdE~I~~lm~EGEkLSK~ql~q  472 (961)
T KOG4673|consen  403 LREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAA----------LLKDELAEKDEIINQLMAEGEKLSKKQLAQ  472 (961)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            4678899999999999999999999999999887765421          122344444444444444444444443333


Q ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        268 SKQMEDLELKLNSLEE----TAGEARYLKDEVDILRETA-----------EKVEKYEGIIETYKKKAEELVDLKKQVKQL  332 (684)
Q Consensus       268 e~el~~l~~k~~~L~~----~a~~~~~L~deld~lr~~~-----------~~~~k~e~~le~~k~kleel~~l~~~~~~L  332 (684)
                      ...|.+|+.+..+-..    .-..+..|..+...++.-.           +-+.++..++.+.++.   +...+..+..|
T Consensus       473 s~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~---~~~sr~~~~~l  549 (961)
T KOG4673|consen  473 SAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDY---YSNSRALAAAL  549 (961)
T ss_pred             HHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHH
Confidence            4444444444332221    1123444444444443321           2233444444443333   34445667777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhch-----HHHHHHHHHHHHHHHHHHHH
Q psy11659        333 ESKNLSYIQQTLDLEEELKKNGNW-----KSQVDMYKKQMSELYNQFNE  376 (684)
Q Consensus       333 e~~~~~l~~~~~~LEeel~~~~~~-----r~~le~~k~qi~~l~~~l~e  376 (684)
                      +.++...+.....+..++.+.+.+     +.+-..|-.++.+|...+.-
T Consensus       550 e~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~  598 (961)
T KOG4673|consen  550 EAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSK  598 (961)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            777766666655555555444332     33444455555555544443

>KOG0999|consensus

Probab=97.85  E-value=0.071  Score=58.00  Aligned_cols=117  Identities=21%  Similarity=0.350  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        336 NLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKET  415 (684)
Q Consensus       336 ~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~  415 (684)
                      -..|..++..|+.+++..   +..+...+.+...+....++...-...++.+..+|+..+.+..-.-.|+..+..+|++.
T Consensus       102 E~~yl~kI~eleneLKq~---r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEE  178 (772)
T KOG0999|consen  102 EEYYLQKILELENELKQL---RQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEE  178 (772)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            446788899999988888   77777777777777777777766666777777778888877776666777777777666


Q ss_pred             HHHHHHHhhhccchhhhhhcccccccccccCChHHHHHHHHHHHHHHHHhhhhcc
Q psy11659        416 NEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQK  470 (684)
Q Consensus       416 ~~eL~~~q~~~~~~~~l~~~~~~~~~~~e~~~~~el~~~l~~Le~Enk~Lr~~~~  470 (684)
                      +=.|.. +...     |-+    +     .+.+.-++..+.||+.|...|..+.+
T Consensus       179 NIsLQK-qVs~-----LR~----s-----QVEyEglkheikRleEe~elln~q~e  218 (772)
T KOG0999|consen  179 NISLQK-QVSN-----LRQ----S-----QVEYEGLKHEIKRLEEETELLNSQLE  218 (772)
T ss_pred             cchHHH-HHHH-----Hhh----h-----hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            555532 1111     110    0     01134466677777777666664333

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.85  E-value=0.2  Score=62.92  Aligned_cols=24  Identities=17%  Similarity=0.385  Sum_probs=13.8

Q ss_pred             HHHHHHHHHhHHhhhhhHHHHHHH
Q psy11659        600 LNELKNLRKKNDDKDKMLDDLEKT  623 (684)
Q Consensus       600 ~~ei~~Lr~ql~e~e~~i~~LE~~  623 (684)
                      ...|..|+.++...++.|...+..
T Consensus       770 ~~~I~~l~~~i~~L~~~l~~ie~~  793 (1201)
T PF12128_consen  770 PERIQQLKQEIEQLEKELKRIEER  793 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345666666666666666544443

>KOG0933|consensus

Probab=97.82  E-value=0.13  Score=60.05  Aligned_cols=111  Identities=21%  Similarity=0.286  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        301 TAEKVEKYEGIIETYKKKAE-ELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETK  379 (684)
Q Consensus       301 ~~~~~~k~e~~le~~k~kle-el~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~  379 (684)
                      ..+++..+++.+..++.--+ .+.++.+.++......   .+....++.....+..+..+++.+.+.+...+..+.....
T Consensus       767 ~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~---e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~  843 (1174)
T KOG0933|consen  767 CEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRA---EESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEK  843 (1174)
T ss_pred             HHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555544432222 3333333333333332   2333344444444445566677677777777766666666


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        380 RADKSEFENKKLQEKVTSLQREKEKLIVERDSLKE  414 (684)
Q Consensus       380 ~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e  414 (684)
                      .+..+..++..+..++...+.+......++.....
T Consensus       844 ~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~  878 (1174)
T KOG0933|consen  844 QISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKA  878 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence            66666666666666666666665555544444333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.78  E-value=0.026  Score=65.61  Aligned_cols=67  Identities=22%  Similarity=0.275  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659        449 TELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERV  516 (684)
Q Consensus       449 ~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~  516 (684)
                      +.|...|.-++..|..|.....+.+.-++ +|=+-|.++++.++-++.....-..+|.+|+..|+++-
T Consensus       590 e~L~~aL~amqdk~~~LE~sLsaEtriKl-dLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~  656 (697)
T PF09726_consen  590 EVLMSALSAMQDKNQHLENSLSAETRIKL-DLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL  656 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55667778888888888766666665554 56777899999999999999999999999999999984

; GO: 0016021 integral to membrane

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.77  E-value=0.27  Score=62.06  Aligned_cols=103  Identities=12%  Similarity=0.175  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhchhhHHHHHHH
Q psy11659        527 IFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNL  606 (684)
Q Consensus       527 l~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~~~~~ei~~L  606 (684)
                      +..+...+.+++++....-   + ....+..+...+-..++++.....++..........|+.+.....+  ....+..+
T Consensus       605 W~~a~~al~~L~eq~g~~~---~-~~~~v~~~mq~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l~~~~~g--~~~~l~~~  678 (1486)
T PRK04863        605 WLAAQDALARLREQSGEEF---E-DSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQPGGS--EDPRLNAL  678 (1486)
T ss_pred             HHhhHHHHHHHHHhcchhh---c-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC--ccHHHHHH
Confidence            4455555555555444311   1 1244555555555566666655556666666666666665554443  33344444


Q ss_pred             HHhHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHH
Q psy11659        607 RKKNDDKDKMLDDLEKTLEKKEQQEKLIATAFYN  640 (684)
Q Consensus       607 r~ql~e~e~~i~~LE~~~~~~~~E~~l~~~a~y~  640 (684)
                      ...+.   +-+  +-.-+.-..-+....++|||.
T Consensus       679 ~~~~~---Gvl--vsel~~~v~~~~~~~~~A~lg  707 (1486)
T PRK04863        679 AERFG---GVL--LSEIYDDVSLEDAPYFSALYG  707 (1486)
T ss_pred             HHhcC---Cee--hhHhhhccCcchHHHHHHHHH
Confidence            43222   111  212222224566666888885

>KOG0946|consensus

Probab=97.68  E-value=0.1  Score=59.42  Aligned_cols=17  Identities=18%  Similarity=0.344  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHhc-CCC
Q psy11659        115 LARLMQLILGCAIN-CNR  131 (684)
Q Consensus       115 l~~ll~lvl~~av~-~~~  131 (684)
                      +.-|+.++||.+.. |++
T Consensus       545 iqgl~A~lLgl~~~fn~~  562 (970)
T KOG0946|consen  545 IQGLCAFLLGLCYYFNDN  562 (970)
T ss_pred             HHHHHHHHHHHHHHcCcc
Confidence            67788899998886 543

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=97.66  E-value=1e-05  Score=95.31  Aligned_cols=43  Identities=12%  Similarity=0.290  Sum_probs=0.0

Q ss_pred             HHHHHHhhchhhhhchhhHHHHHHHHHhHHhhhhhHHHHHHHHh
Q psy11659        582 KANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLE  625 (684)
Q Consensus       582 ~ak~~i~~l~~~~~~~~~~~ei~~Lr~ql~e~e~~i~~LE~~~~  625 (684)
                      +.+..|.++.+.... .+...+..|...|..++..+..++..|+
T Consensus       558 ~~~~~le~l~~~~~~-~~~~ki~~Le~~L~~k~~e~~~~eer~k  600 (713)
T PF05622_consen  558 KKREQLEELEQELNQ-SLSQKIEELEEALQKKEEEMRAMEERYK  600 (713)
T ss_dssp             --------------------------------------------
T ss_pred             HHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhHHHHHhHHHHHH
Confidence            344455555554332 2355677777777777777766665443

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0994|consensus

Probab=97.61  E-value=0.28  Score=57.87  Aligned_cols=68  Identities=18%  Similarity=0.223  Sum_probs=34.2

Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        346 LEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLK  413 (684)
Q Consensus       346 LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~  413 (684)
                      +++......+.+...+.++.+...|-..-.+.-..++.|+.++..-...|.....++..|..+..+..
T Consensus      1677 ~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl 1744 (1758)
T KOG0994|consen 1677 LEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVL 1744 (1758)
T ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence            33333444444555666665555554444444444555555555555555555555555554444433

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.59  E-value=0.00063  Score=80.43  Aligned_cols=33  Identities=18%  Similarity=0.272  Sum_probs=27.2

Q ss_pred             HHHHHHHHHhHHhhhhhHHHHHHHHhhHHHHHH
Q psy11659        600 LNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEK  632 (684)
Q Consensus       600 ~~ei~~Lr~ql~e~e~~i~~LE~~~~~~~~E~~  632 (684)
                      ..++.+|+.++...++++..|..-+...=.|.+
T Consensus       605 ~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr  637 (722)
T PF05557_consen  605 EKEIAELKAELASAEKRNQRLKEVFKAKSQEFR  637 (722)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            557899999999999999999998887755555

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.59  E-value=0.18  Score=58.17  Aligned_cols=92  Identities=21%  Similarity=0.170  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        328 QVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIV  407 (684)
Q Consensus       328 ~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~  407 (684)
                      .+..++.+...+...+..++........+...+..++..+......+.+...+...++.++..|......+..++..+..
T Consensus       307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~  386 (562)
T PHA02562        307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQD  386 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHH
Confidence            44444444444444444444433333333444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHH
Q psy11659        408 ERDSLKETNEEL  419 (684)
Q Consensus       408 e~~~L~e~~~eL  419 (684)
                      +++.+...+.++
T Consensus       387 ~l~~~~~~~~~~  398 (562)
T PHA02562        387 ELDKIVKTKSEL  398 (562)
T ss_pred             HHHHHHHHHHHH
Confidence            444444444433

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.59  E-value=0.23  Score=56.40  Aligned_cols=16  Identities=31%  Similarity=0.613  Sum_probs=10.0

Q ss_pred             HHHHHHHHHhHHhhhh
Q psy11659        600 LNELKNLRKKNDDKDK  615 (684)
Q Consensus       600 ~~ei~~Lr~ql~e~e~  615 (684)
                      ..+...|..+..+.+.
T Consensus       462 ~eEy~~L~~ka~e~ee  477 (522)
T PF05701_consen  462 LEEYESLSKKAEEAEE  477 (522)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4666777666666553

Several sequences in this family are described as being myosin heavy chain-like.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.57  E-value=0.26  Score=56.61  Aligned_cols=102  Identities=14%  Similarity=0.228  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhchhhHHHHHHHHHhHHhhhhh
Q psy11659        537 LKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKM  616 (684)
Q Consensus       537 ~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~~~~~ei~~Lr~ql~e~e~~  616 (684)
                      +...++.|+..|.+....+.+|.....+.+--.-    ++.+.-+.+.+-| +|-..++        ..++.+..+++.-
T Consensus       412 Lq~amekLq~~f~~~~~e~adl~e~~e~le~~~~----ql~~et~ti~eyi-~ly~~qr--------~~~k~r~~e~~~~  478 (617)
T PF15070_consen  412 LQEAMEKLQSRFMDLMEEKADLKERVEKLEHRFI----QLSGETDTIGEYI-TLYQSQR--------AVLKQRHQEKEEY  478 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HhccCccchhhhh-ccccccc--------cccchhHHHHHHH
Confidence            3345556666666666666666665555544432    2223333333333 2333333        3556666677666


Q ss_pred             HHHHHHHHhhH--------HHHHHHHH--HHHHHHHHHHHHHhHh
Q psy11659        617 LDDLEKTLEKK--------EQQEKLIA--TAFYNLALQKQRQTAD  651 (684)
Q Consensus       617 i~~LE~~~~~~--------~~E~~l~~--~a~y~~~~~~~~~~~~  651 (684)
                      |..|..+.+..        +.=..|+.  ..||...+....+..+
T Consensus       479 i~~l~~~~e~mk~kl~elq~lv~~l~~~~~e~~~k~l~aaq~~~~  523 (617)
T PF15070_consen  479 ISRLAQDREEMKVKLLELQELVLRLVGDHNEWHSKFLAAAQNPAD  523 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhcCCCC
Confidence            66666655443        11122322  2566666555544433

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.56  E-value=0.11  Score=60.47  Aligned_cols=86  Identities=19%  Similarity=0.221  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc--cccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy11659        197 MELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEP--TNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDL  274 (684)
Q Consensus       197 ~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~~~~~--~~~~~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l  274 (684)
                      ..|+..+..|..+.....+-=.+|+.++..+.++.  ....+..++.+.++++..+..+..++..-+..+..+|+.+.+.
T Consensus       421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE  500 (697)
T PF09726_consen  421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE  500 (697)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666666555555556666655544321  2234667777778888877777777766677777777776666


Q ss_pred             HHHHHHHH
Q psy11659        275 ELKLNSLE  282 (684)
Q Consensus       275 ~~k~~~L~  282 (684)
                      +..-..+.
T Consensus       501 ~~~R~~lE  508 (697)
T PF09726_consen  501 RRQRASLE  508 (697)
T ss_pred             HHHHHHHH
Confidence            55554444

; GO: 0016021 integral to membrane

>KOG0964|consensus

Probab=97.53  E-value=0.33  Score=56.59  Aligned_cols=48  Identities=19%  Similarity=0.267  Sum_probs=28.7

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        373 QFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK  420 (684)
Q Consensus       373 ~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~  420 (684)
                      .+.....++...+.++....-+..++..+-.++...+..|+.+...|-
T Consensus       329 ~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~  376 (1200)
T KOG0964|consen  329 VLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLL  376 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            334444444455555666666666666666666666666666666664

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.52  E-value=0.0011  Score=78.56  Aligned_cols=107  Identities=21%  Similarity=0.270  Sum_probs=65.4

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------h---------hh-hHhH-HHHhHHHHHHHHHHHHHH
Q psy11659        481 NAKLDDVTQQVKMKTLENRKANQRILELEAELKER---------V---------TE-DAAG-MKVKIFELQNEIKNLKEQ  540 (684)
Q Consensus       481 ~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l---------~---------~~-~~~~-lk~kl~e~~~ele~~r~~  540 (684)
                      ...+......+..|+.++..+..++..|..+|+..         +         +. .... -+..+.....|.+.++..
T Consensus       502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~  581 (722)
T PF05557_consen  502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLAR  581 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566777888888888888888888888872         0         11 0111 134556677777777777


Q ss_pred             HHHHHHhh------------hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy11659        541 INHQQEEH------------LEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAF  587 (684)
Q Consensus       541 l~~le~q~------------~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i  587 (684)
                      +..++.-.            ......+.+|+..+...+.-+.-+.+-|.....+-++++
T Consensus       582 l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av  640 (722)
T PF05557_consen  582 LRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAV  640 (722)
T ss_dssp             HHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            75554221            112356788888888887777655555555444444444

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.51  E-value=0.15  Score=52.26  Aligned_cols=58  Identities=17%  Similarity=0.216  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        360 VDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNE  417 (684)
Q Consensus       360 le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~  417 (684)
                      +..+..++++.+..+...-.+++.+-.+...+...+-.+....+.+..++..++..+.
T Consensus       181 i~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elr  238 (294)
T COG1340         181 IQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELR  238 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333333333333333333333333

>PRK11637 AmiB activator; Provisional

Probab=97.50  E-value=0.19  Score=55.84  Aligned_cols=27  Identities=15%  Similarity=0.246  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        194 QRCMELDMQVSMLQEEKSCLVEEKRRL  220 (684)
Q Consensus       194 ~~~~el~~q~~~L~~e~~~l~~E~~~l  220 (684)
                      +.+..++..+..++.+...+..++..+
T Consensus        54 ~qi~~~~~~i~~~~~~~~~~~~~l~~l   80 (428)
T PRK11637         54 QDIAAKEKSVRQQQQQRASLLAQLKKQ   80 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333334333334343333

>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []

Probab=97.48  E-value=0.0011  Score=58.18  Aligned_cols=97  Identities=18%  Similarity=0.235  Sum_probs=63.5

Q ss_pred             HHHHHHHhhcCC----CCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHH
Q psy11659         13 NILLKWLQTFTL----VAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYF   87 (684)
Q Consensus        13 ~~l~~W~~tf~~----~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~   87 (684)
                      ..|+.|||..-.    ..++.++ +||.||++|..+++.+.|..++...   ++...+  ++.-...|+..+++    +.
T Consensus         2 ~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~---~~~~~~--~~~~~~~Ni~~~l~----~~   72 (108)
T PF00307_consen    2 KELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKK---INPNLK--SPFDKLENIELALE----AA   72 (108)
T ss_dssp             HHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGG---SSTSSS--SHHHHHHHHHHHHH----HH
T ss_pred             HHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhh---ccccch--hhhHHHHHHHHHHH----HH
Confidence            579999998632    4567787 9999999999999999999886532   311111  34556677777776    44


Q ss_pred             HHhhcccccCccccchhHHhhcCCHHHHHHHHHHH
Q psy11659         88 QEYFDQALGEFGKVDVHKIVENIDAKELARLMQLI  122 (684)
Q Consensus        88 ~~~l~~~~~~~~~pd~~~ia~~~d~~el~~ll~lv  122 (684)
                      .+.+|.+..    .++.-|...+|...+..++..+
T Consensus        73 ~~~lg~~~~----~~~~dl~~~~~~~~vl~~l~~l  103 (108)
T PF00307_consen   73 EKKLGIPPL----LSPEDLVEKGDEKSVLSFLWQL  103 (108)
T ss_dssp             HHHTTSSCT----S-HHHHHSTT-HHHHHHHHHHH
T ss_pred             HHHcCCCCC----CCHHHHHHCcCHHHHHHHHHHH
Confidence            444676432    1555666556766665555444

It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....

>KOG4673|consensus

Probab=97.47  E-value=0.29  Score=54.75  Aligned_cols=60  Identities=17%  Similarity=0.325  Sum_probs=37.9

Q ss_pred             hHHHHHHHHHHHHHH----HHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q psy11659        448 ITELRQKLVRLTHEN----NMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRK----ANQRILELEAELKER  515 (684)
Q Consensus       448 ~~el~~~l~~Le~En----k~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~----l~~~i~eLq~qle~l  515 (684)
                      ..+|+..|.+-++..    .++|        .+|.+|+..|+.+.++..+|-.+...    +-++|..||..+...
T Consensus       589 v~dLR~~L~~~Eq~aarrEd~~R--------~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~  656 (961)
T KOG4673|consen  589 VEDLRQTLSKKEQQAARREDMFR--------GEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKA  656 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhh
Confidence            467777776655432    3444        67777888888888777777665532    456666666655443

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.42  E-value=0.13  Score=49.23  Aligned_cols=78  Identities=21%  Similarity=0.333  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        269 KQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGII-ETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDL  346 (684)
Q Consensus       269 ~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~l-e~~k~kleel~~l~~~~~~Le~~~~~l~~~~~~L  346 (684)
                      .++..++.++..++.....++.+.+++..++..+..+..-...+ ...+.--.+...+...+..|++.+..+......+
T Consensus        43 ~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~l  121 (193)
T PF14662_consen   43 EEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGL  121 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence            33444444444555555666777777777766554443222221 1112111233344444455555444444333333

>PRK11637 AmiB activator; Provisional

Probab=97.32  E-value=0.35  Score=53.72  Aligned_cols=16  Identities=13%  Similarity=-0.105  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy11659        203 VSMLQEEKSCLVEEKR  218 (684)
Q Consensus       203 ~~~L~~e~~~l~~E~~  218 (684)
                      +..+..+...+..++.
T Consensus        70 ~~~~~~~l~~l~~qi~   85 (428)
T PRK11637         70 RASLLAQLKKQEEAIS   85 (428)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.32  E-value=0.07  Score=49.52  Aligned_cols=16  Identities=31%  Similarity=0.316  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHHh
Q psy11659        338 SYIQQTLDLEEELKKN  353 (684)
Q Consensus       338 ~l~~~~~~LEeel~~~  353 (684)
                      .+..++..||+++...
T Consensus        77 ~l~rriq~LEeele~a   92 (143)
T PF12718_consen   77 QLNRRIQLLEEELEEA   92 (143)
T ss_pred             HHHhhHHHHHHHHHHH
Confidence            3344444444444444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0612|consensus

Probab=97.32  E-value=0.69  Score=55.48  Aligned_cols=13  Identities=23%  Similarity=0.345  Sum_probs=6.7

Q ss_pred             CCcCChhHhhhhc
Q psy11659         49 PEWFSEMWLAKIK   61 (684)
Q Consensus        49 p~~f~~~~l~~i~   61 (684)
                      |+|.++.+|..+.
T Consensus       240 PDYISPEvLqs~~  252 (1317)
T KOG0612|consen  240 PDYISPEVLQSQG  252 (1317)
T ss_pred             CCccCHHHHHhhc
Confidence            5555555554443

>KOG0996|consensus

Probab=97.30  E-value=0.69  Score=55.22  Aligned_cols=53  Identities=23%  Similarity=0.317  Sum_probs=31.1

Q ss_pred             chhhhhhcHHHHHHHHHHHHHHhhcc-cccCccccchhHH-hhcCC-HHHHHHHHHHHHHHHh
Q psy11659         68 NWRLKISNLKKINEGIVDYFQEYFDQ-ALGEFGKVDVHKI-VENID-AKELARLMQLILGCAI  127 (684)
Q Consensus        68 nw~l~~~Nl~~i~~~i~~y~~~~l~~-~~~~~~~pd~~~i-a~~~d-~~el~~ll~lvl~~av  127 (684)
                      ..||-+.|+  ++.+..+|.    |. .+.+|+ |.+..| |.+++ -..+..-+.+|+||=.
T Consensus        81 ~~RL~I~~i--~~~NFKSYa----G~~ilGPFH-ksFtaIvGPNGSGKSNVIDsmLFVFGfRA  136 (1293)
T KOG0996|consen   81 GPRLMITEI--VVENFKSYA----GKQILGPFH-KSFTAIVGPNGSGKSNVIDSMLFVFGFRA  136 (1293)
T ss_pred             CCeeeehhh--hhhhhhhhc----CceeecCCC-CCceeeECCCCCCchHHHHHHHHHhhhhH
Confidence            347776665  455556665    33 233454 666655 44443 3567777888888754

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.03  E-value=0.93  Score=51.59  Aligned_cols=18  Identities=28%  Similarity=0.392  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHhh
Q psy11659        449 TELRQKLVRLTHENNMLQ  466 (684)
Q Consensus       449 ~el~~~l~~Le~Enk~Lr  466 (684)
                      .++...|..+..|....+
T Consensus       368 ~~l~~~Lqql~~Eae~Ak  385 (522)
T PF05701_consen  368 SELPKALQQLSSEAEEAK  385 (522)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            556666666666665554

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0994|consensus

Probab=97.02  E-value=1.2  Score=52.83  Aligned_cols=93  Identities=22%  Similarity=0.311  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCc-----cccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        205 MLQEEKSCLVEEKRRLEERFQENFVEP-----TNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLN  279 (684)
Q Consensus       205 ~L~~e~~~l~~E~~~l~~~~~~~~~~~-----~~~~~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~  279 (684)
                      .+..+..++...+...+.-++....+.     .+.....|+.++....+.|...|..+.+......-..+++..|+....
T Consensus      1198 ay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~ 1277 (1758)
T KOG0994|consen 1198 AYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFN 1277 (1758)
T ss_pred             hhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHH
Confidence            344455555555555555554322221     234566777888888887777777766666665555567777776666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy11659        280 SLEETAGEARYLKDEVDILRE  300 (684)
Q Consensus       280 ~L~~~a~~~~~L~deld~lr~  300 (684)
                      .|.   .-+++|++.++.+++
T Consensus      1278 ~l~---~~~keL~e~~~~ik~ 1295 (1758)
T KOG0994|consen 1278 GLL---TTYKELREQLEKIKE 1295 (1758)
T ss_pred             HHH---HHHHHHHHHHHHhhc
Confidence            555   445666666666554

>KOG0964|consensus

Probab=96.97  E-value=1.2  Score=52.09  Aligned_cols=80  Identities=19%  Similarity=0.334  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11659        326 KKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKL  405 (684)
Q Consensus       326 ~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l  405 (684)
                      ...+..++.......+++..++..+...   +.+++.+-..+.++.+.++++..+...+=.+=+.++..++.+..++.+.
T Consensus       417 q~e~~~~e~~l~~~~e~i~~l~~si~e~---~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~  493 (1200)
T KOG0964|consen  417 QKEIEDLESELKEKLEEIKELESSINET---KGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRA  493 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444445555555555555544   7777777777777777777777766666666677777777777766654


Q ss_pred             HHH
Q psy11659        406 IVE  408 (684)
Q Consensus       406 ~~e  408 (684)
                      ...
T Consensus       494 ~~~  496 (1200)
T KOG0964|consen  494 EKN  496 (1200)
T ss_pred             HHH
Confidence            443

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.97  E-value=0.18  Score=46.76  Aligned_cols=63  Identities=22%  Similarity=0.338  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        358 SQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK  420 (684)
Q Consensus       358 ~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~  420 (684)
                      ...+.+.+.|+-|+..+.....++......+.....+.+.+++.+..+..+++.+..+++++.
T Consensus        73 ~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~  135 (143)
T PF12718_consen   73 SNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELE  135 (143)
T ss_pred             HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            334444455555555555444444444444444444555555555555555555555555553

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0995|consensus

Probab=96.91  E-value=1  Score=50.10  Aligned_cols=60  Identities=23%  Similarity=0.322  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        238 SMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRE  300 (684)
Q Consensus       238 ~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~  300 (684)
                      .|+.....++..+.+..+....+..+...+.+.+..++.++.   ....++..++.+.+.|+.
T Consensus       263 slre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie---~kEeE~e~lq~~~d~Lk~  322 (581)
T KOG0995|consen  263 SLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIE---EKEEEIEKLQKENDELKK  322 (581)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444443332   222444445555555544

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.87  E-value=1.4  Score=51.19  Aligned_cols=52  Identities=15%  Similarity=0.272  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        451 LRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEA  510 (684)
Q Consensus       451 l~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~  510 (684)
                      |+.+|..+++|+..|.        ..+.+.+.+|+.+.............+...+..+..
T Consensus       270 L~qQL~qve~EK~~L~--------~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~  321 (717)
T PF09730_consen  270 LKQQLLQVEREKSSLL--------SNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK  321 (717)
T ss_pred             HHHHHHHHhhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3466677777777776        666777777777766666665555555555555444

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.82  E-value=0.46  Score=47.63  Aligned_cols=26  Identities=23%  Similarity=0.446  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        326 KKQVKQLESKNLSYIQQTLDLEEELK  351 (684)
Q Consensus       326 ~~~~~~Le~~~~~l~~~~~~LEeel~  351 (684)
                      +.+...|+.....++.....+++++.
T Consensus       102 k~r~~~le~el~~l~~~~~~l~~~i~  127 (239)
T COG1579         102 KERINSLEDELAELMEEIEKLEKEIE  127 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444443333

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.77  E-value=1.6  Score=50.36  Aligned_cols=25  Identities=4%  Similarity=-0.011  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        491 VKMKTLENRKANQRILELEAELKER  515 (684)
Q Consensus       491 ~~~Le~~~~~l~~~i~eLq~qle~l  515 (684)
                      +..|+.-+..+-.+..+|..+++.+
T Consensus       416 mekLq~~f~~~~~e~adl~e~~e~l  440 (617)
T PF15070_consen  416 MEKLQSRFMDLMEEKADLKERVEKL  440 (617)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            3344444444444444444444444

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.73  E-value=0.66  Score=45.38  Aligned_cols=27  Identities=26%  Similarity=0.345  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        195 RCMELDMQVSMLQEEKSCLVEEKRRLE  221 (684)
Q Consensus       195 ~~~el~~q~~~L~~e~~~l~~E~~~l~  221 (684)
                      ++.+|.-++.++......+..||..|+
T Consensus        13 ki~~L~n~l~elq~~l~~l~~ENk~Lk   39 (194)
T PF15619_consen   13 KIKELQNELAELQRKLQELRKENKTLK   39 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666677777777777777787775

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=96.73  E-value=0.98  Score=47.29  Aligned_cols=191  Identities=23%  Similarity=0.231  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-C-CccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy11659        199 LDMQVSMLQEEKSCLVEEKRRLEERFQENF-V-EPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLEL  276 (684)
Q Consensus       199 l~~q~~~L~~e~~~l~~E~~~l~~~~~~~~-~-~~~~~~~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~  276 (684)
                      ...+++.|+.....+......+.-.....+ . .+....-..|..-+.+.++....+.....+++.++.++..++.-++.
T Consensus        28 yKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~  107 (319)
T PF09789_consen   28 YKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLRE  107 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            334455556666666655555432222111 1 11122334455555555565555555555555555555555544444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy11659        277 KLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNW  356 (684)
Q Consensus       277 k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~  356 (684)
                      ++......       ...+. .++..                 .+-..+-.+++.+..++..+...+..+-++...+   
T Consensus       108 ~la~~r~~-------~~~~~-~~~~~-----------------~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl---  159 (319)
T PF09789_consen  108 KLARQRVG-------DEGIG-ARHFP-----------------HEREDLVEQLEKLREQIEQLERDLQSLLDEKEEL---  159 (319)
T ss_pred             HHHhhhhh-------hcccc-ccccc-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            44322211       01110 01100                 1122333444445555555555555555555555   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        357 KSQVDMYKKQMSELYNQFNEETK-------RADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNE  417 (684)
Q Consensus       357 r~~le~~k~qi~~l~~~l~e~~~-------~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~  417 (684)
                      ..+-+.|+..+..|..+++-.-.       -++.+=-|++.|++++..++.|++-+..-+..++..++
T Consensus       160 ~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le  227 (319)
T PF09789_consen  160 VTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE  227 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777788888888777766542       27888899999999999999999988888888877655

>KOG0250|consensus

Probab=96.67  E-value=2.3  Score=50.86  Aligned_cols=38  Identities=29%  Similarity=0.349  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy11659        555 IEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDP  592 (684)
Q Consensus       555 ~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~  592 (684)
                      ..+++..+.....+.+..+..|...-.+++..+..+++
T Consensus       757 ~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~  794 (1074)
T KOG0250|consen  757 LEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDA  794 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            34444444444444444444444444444444444444

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.67  E-value=1  Score=46.76  Aligned_cols=20  Identities=35%  Similarity=0.536  Sum_probs=18.4

Q ss_pred             ChHHHHHHHHHHHHHHHHhh
Q psy11659        447 PITELRQKLVRLTHENNMLQ  466 (684)
Q Consensus       447 ~~~el~~~l~~Le~Enk~Lr  466 (684)
                      .+..|+.++..|+.||..||
T Consensus       161 ~le~Lq~Klk~LEeEN~~LR  180 (306)
T PF04849_consen  161 QLEALQEKLKSLEEENEQLR  180 (306)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            36889999999999999999

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.64  E-value=1.9  Score=49.52  Aligned_cols=17  Identities=24%  Similarity=0.442  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHhhchh
Q psy11659        576 NRKYIEKANSAFKLLDP  592 (684)
Q Consensus       576 ~k~~~e~ak~~i~~l~~  592 (684)
                      |.++++.|..+++..+|
T Consensus       532 Y~~ALe~i~~alE~veP  548 (560)
T PF06160_consen  532 YEKALETIATALEKVEP  548 (560)
T ss_pred             HHHHHHHHHHHHHHhCC
Confidence            55566666666666666

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=96.60  E-value=0.73  Score=44.20  Aligned_cols=74  Identities=16%  Similarity=0.181  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy11659        199 LDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDL  274 (684)
Q Consensus       199 l~~q~~~L~~e~~~l~~E~~~l~~~~~~~~~~~~~~~~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l  274 (684)
                      +...+....+....|..++..++..+...-  .+...+..+..++++++..+..+|.....+-.++..++++...|
T Consensus        27 L~~~ve~~ee~na~L~~e~~~L~~q~~s~Q--qal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L  100 (193)
T PF14662_consen   27 LQRSVETAEEGNAQLAEEITDLRKQLKSLQ--QALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSL  100 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444555554444332110  01112333444444444444444444444444443333333333

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=96.59  E-value=1.1  Score=45.96  Aligned_cols=99  Identities=17%  Similarity=0.205  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhcc
Q psy11659        357 KSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLG  436 (684)
Q Consensus       357 r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~~q~~~~~~~~l~~~~  436 (684)
                      -..+..++....-|..+++....+...|+.+....+..+..-.--++....++..-+-.+.+++..- + ....-++...
T Consensus       136 n~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~-q-ne~~kv~k~~  213 (305)
T PF14915_consen  136 NSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMY-Q-NEQDKVNKYI  213 (305)
T ss_pred             cchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hHHHHHHHHH
Confidence            3345556666667777888888888888888777777665555445555444444444444443210 0 0000011100


Q ss_pred             cccccccccCChHHHHHHHHHHHHHHHHhh
Q psy11659        437 ENLDLSEDSVPITELRQKLVRLTHENNMLQ  466 (684)
Q Consensus       437 ~~~~~~~e~~~~~el~~~l~~Le~Enk~Lr  466 (684)
                           + .  . .-+.++|..|+.||-.|+
T Consensus       214 -----~-K--q-es~eERL~QlqsEN~LLr  234 (305)
T PF14915_consen  214 -----G-K--Q-ESLEERLSQLQSENMLLR  234 (305)
T ss_pred             -----H-H--H-HHHHHHHHHHHHHHHHHH
Confidence                 0 0  1 446789999999998887

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=96.57  E-value=1.2  Score=46.55  Aligned_cols=93  Identities=24%  Similarity=0.278  Sum_probs=59.5

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhcccccccccccCChHHHHHHHHHH
Q psy11659        379 KRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRL  458 (684)
Q Consensus       379 ~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~~q~~~~~~~~l~~~~~~~~~~~e~~~~~el~~~l~~L  458 (684)
                      ..++++...+..|+..+..+..+++.+..+++.++.+..-|..+         |+..-+++  ...++       .|..|
T Consensus       133 ~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~E---------Ln~~L~g~--~~riv-------DIDaL  194 (319)
T PF09789_consen  133 EQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHE---------LNYILNGD--ENRIV-------DIDAL  194 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhCCC--CCCcc-------cHHHH
Confidence            34445566667777777888888888888888888887776532         22110001  11122       35567


Q ss_pred             HHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHH
Q psy11659        459 THENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLE  497 (684)
Q Consensus       459 e~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~  497 (684)
                      =.||+.|+        +++..++.+.+-+...+..+-..
T Consensus       195 i~ENRyL~--------erl~q~qeE~~l~k~~i~KYK~~  225 (319)
T PF09789_consen  195 IMENRYLK--------ERLKQLQEEKELLKQTINKYKSA  225 (319)
T ss_pred             HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999998        88888887777776666555443

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.53  E-value=2.2  Score=48.96  Aligned_cols=89  Identities=19%  Similarity=0.292  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy11659        313 ETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQ  392 (684)
Q Consensus       313 e~~k~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~  392 (684)
                      ...++++.++..++.+++.+........+....|..++...... ..-..|.+.|-+.-..+..-...+.+.-.+.+.++
T Consensus       440 ~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~-~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQ  518 (594)
T PF05667_consen  440 SESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD-VNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQ  518 (594)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            34556667777777888888888777777777788877777554 33444666666555444444444444444444444


Q ss_pred             HHHHHHHHHH
Q psy11659        393 EKVTSLQREK  402 (684)
Q Consensus       393 ~~l~~le~e~  402 (684)
                      .++..+...+
T Consensus       519 keiN~l~gkL  528 (594)
T PF05667_consen  519 KEINSLTGKL  528 (594)
T ss_pred             HHHHHHHHHH
Confidence            4444444333

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=96.43  E-value=1.6  Score=46.11  Aligned_cols=65  Identities=15%  Similarity=0.256  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhcccccccccccC--ChHHHHHHHHHHHHHHHHhhhhccc
Q psy11659        394 KVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSV--PITELRQKLVRLTHENNMLQMNQKD  471 (684)
Q Consensus       394 ~l~~le~e~e~l~~e~~~L~e~~~eL~~~q~~~~~~~~l~~~~~~~~~~~e~~--~~~el~~~l~~Le~Enk~Lr~~~~~  471 (684)
                      .+..+...-..|..++..+-....++...-..++.          -   +..+  .|..+...+.+|+.||..++...+.
T Consensus       203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe----------~---F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~  269 (309)
T PF09728_consen  203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNE----------V---FETFKKEMEKMSKKIKKLEKENQTWKSKWEK  269 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555666666666655422111111          0   0011  1466677888888888888744443

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function

Probab=96.31  E-value=0.0059  Score=57.62  Aligned_cols=59  Identities=29%  Similarity=0.486  Sum_probs=37.1

Q ss_pred             HHHHHhhcCCCCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHH
Q psy11659         15 LLKWLQTFTLVAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKI   79 (684)
Q Consensus        15 l~~W~~tf~~~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i   79 (684)
                      |..||++++++.|..++ -|++||+.+++||+...|...+-..     -+++. .-..|+.|...+
T Consensus         1 l~~WL~~l~ls~~~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~-----y~~~~-s~~~Kl~NW~~L   60 (158)
T PF06294_consen    1 LLKWLQSLDLSRPPKNIRRDFSDGYLVAEILSRYYPKLVDLHN-----YSNGN-SVAQKLNNWETL   60 (158)
T ss_dssp             HHHHHHHS--S--SS-HHHHHTTSHHHHHHHHHH-TTT---SS---------S-SHHHHHHHHHHH
T ss_pred             ChHHHhcCCCCCCCCchHHHcccccHHHHHHHHHCCCCccccc-----cCCCC-CHHHHHHHHHHH
Confidence            67899999988888777 5999999999999999998744211     02233 456777777665

; PDB: 2EE7_A.

>KOG0999|consensus

Probab=96.28  E-value=2.4  Score=46.67  Aligned_cols=74  Identities=23%  Similarity=0.364  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy11659        327 KQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKE  403 (684)
Q Consensus       327 ~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e  403 (684)
                      ....+|++.|-.++..+..|......+..++..+..+...+.-+..++.+...-..-   .-+++.+.+..++.+++
T Consensus       170 seYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~I---AekQlEEALeTlq~ERe  243 (772)
T KOG0999|consen  170 SEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEI---AEKQLEEALETLQQERE  243 (772)
T ss_pred             HHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHH
Confidence            445667777777777777776666666666777777777776666666665432221   22346666666666554

>KOG1029|consensus

Probab=96.24  E-value=3.1  Score=47.62  Aligned_cols=36  Identities=22%  Similarity=0.148  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        386 FENKKLQEKVTSLQREKEKLIVERDSLKETNEELKC  421 (684)
Q Consensus       386 ~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~  421 (684)
                      ..+-.+..+...++.+++.|...+..|..++.+.+|
T Consensus       430 e~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~  465 (1118)
T KOG1029|consen  430 EWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRV  465 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhee
Confidence            344445555555665555555555555555555544

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.23  E-value=1.9  Score=44.84  Aligned_cols=123  Identities=21%  Similarity=0.354  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q psy11659        283 ETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEE-LVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVD  361 (684)
Q Consensus       283 ~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~klee-l~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le  361 (684)
                      .+.++++.|+++-..||..+..+..-..   .|-.+-.. +.++.+++......       +..|.+++...   ...+.
T Consensus       164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~---~~EekEqqLv~dcv~QL~~An~q-------ia~LseELa~k---~Ee~~  230 (306)
T PF04849_consen  164 ALQEKLKSLEEENEQLRSEASQLKTETD---TYEEKEQQLVLDCVKQLSEANQQ-------IASLSEELARK---TEENR  230 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHh---hccHHHHHHHHHHHHHhhhcchh-------HHHHHHHHHHH---HHHHH
Confidence            3445666666666666664444432222   22222111 23333333333222       33333333333   33333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        362 MYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEE  418 (684)
Q Consensus       362 ~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~e  418 (684)
                      .+..+|..|..++.....++..+-.++..|...+......-..|..++..++.+..+
T Consensus       231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E  287 (306)
T PF04849_consen  231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAE  287 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555555555555555556666666666666555555555555555555443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PLN02939 transferase, transferring glycosyl groups

Probab=96.20  E-value=1.6  Score=52.37  Aligned_cols=28  Identities=14%  Similarity=0.394  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        178 LVAELQTVIDARDQMAQRCMELDMQVSM  205 (684)
Q Consensus       178 ~~~~l~~~~~e~d~l~~~~~el~~q~~~  205 (684)
                      ..+++..++.|++.|..++.-|+..+++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (977)
T PLN02939        154 ALEDLEKILTEKEALQGKINILEMRLSE  181 (977)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence            4567888888999988888888877665

>KOG4593|consensus

Probab=96.17  E-value=3.3  Score=47.17  Aligned_cols=25  Identities=12%  Similarity=-0.049  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        491 VKMKTLENRKANQRILELEAELKER  515 (684)
Q Consensus       491 ~~~Le~~~~~l~~~i~eLq~qle~l  515 (684)
                      +..+....+.+..+...+-.++.++
T Consensus       386 lk~l~etl~~~~~~~~~~~tq~~Dl  410 (716)
T KOG4593|consen  386 LKELHETLARRLQKRALLLTQERDL  410 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444333333333333333333

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.12  E-value=1  Score=41.36  Aligned_cols=58  Identities=21%  Similarity=0.305  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659        451 LRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERV  516 (684)
Q Consensus       451 l~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~  516 (684)
                      +-..+.+.++++..|.        .++..|.+.|+........+..+.......+..|+.++..+.
T Consensus         8 v~~kLK~~~~e~dsle--------~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt   65 (140)
T PF10473_consen    8 VEEKLKESESEKDSLE--------DHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELT   65 (140)
T ss_pred             HHHHHHHHHHhHhhHH--------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666666666766        666667777776666666666666666666666666666553

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0978|consensus

Probab=96.08  E-value=3.9  Score=47.23  Aligned_cols=28  Identities=7%  Similarity=0.109  Sum_probs=11.9

Q ss_pred             hcCCCchhhhHHhHcCCHHHHHHHHHHHH
Q psy11659        127 INCNRKQNYITKIMELEESVQQVIMQSIQ  155 (684)
Q Consensus       127 v~~~~~~~~I~~I~~L~~~~Q~~lm~~Iq  155 (684)
                      -+|++-.... +++..+.....-.+.+++
T Consensus       181 ~~~~~~~~~l-~~~~~~~~~~~~e~~~~~  208 (698)
T KOG0978|consen  181 RQLDRFRVEL-RSLKEKVRSETFELRCLQ  208 (698)
T ss_pred             HHHHHHHHHH-HHhhHHHHHHHHHHHHHH
Confidence            3444433333 334334444444455555

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=96.03  E-value=2.5  Score=44.58  Aligned_cols=41  Identities=29%  Similarity=0.372  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        180 AELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRL  220 (684)
Q Consensus       180 ~~l~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l  220 (684)
                      .+++.....++.|..-|.+|+++...+.++......+-..-
T Consensus        64 ~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~k  104 (309)
T PF09728_consen   64 SELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEK  104 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666778888888888887777777655554444433

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=95.87  E-value=0.63  Score=41.66  Aligned_cols=92  Identities=20%  Similarity=0.324  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        237 SSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYK  316 (684)
Q Consensus       237 ~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k  316 (684)
                      ..|.+++..++.++..+...+..+...-..+..++-.+-..++.+......+..|+.++..+..      ++...++-|-
T Consensus        19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~------ry~t~LellG   92 (120)
T PF12325_consen   19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQ------RYQTLLELLG   92 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhc
Confidence            3344444444443333222222233333334444455555555555555556666666665544      5566677777


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy11659        317 KKAEELVDLKKQVKQLES  334 (684)
Q Consensus       317 ~kleel~~l~~~~~~Le~  334 (684)
                      .|-+++.+|+..+..+..
T Consensus        93 EK~E~veEL~~Dv~DlK~  110 (120)
T PF12325_consen   93 EKSEEVEELRADVQDLKE  110 (120)
T ss_pred             chHHHHHHHHHHHHHHHH
Confidence            776666666655555443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.84  E-value=8.5  Score=49.13  Aligned_cols=30  Identities=23%  Similarity=0.307  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        193 AQRCMELDMQVSMLQEEKSCLVEEKRRLEE  222 (684)
Q Consensus       193 ~~~~~el~~q~~~L~~e~~~l~~E~~~l~~  222 (684)
                      ..+|.++..++..+..+...+......+..
T Consensus       748 ~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~  777 (1353)
T TIGR02680       748 DARLAAVDDELAELARELRALGARQRALAD  777 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444334333333333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=95.83  E-value=1.5  Score=40.36  Aligned_cols=95  Identities=21%  Similarity=0.342  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHHHHHHHHHHHHHHHHHhhhH
Q psy11659        178 LVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESAR  257 (684)
Q Consensus       178 ~~~~l~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~~~~~~~~~~~~L~~qleel~e~l~~~e~~~  257 (684)
                      ....+.+...++|.+..++.-|++.+...++.+..+..+++..+.-            +..|+.++..+...+..++..+
T Consensus         8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~e------------ie~L~~el~~lt~el~~L~~EL   75 (140)
T PF10473_consen    8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAE------------IETLEEELEELTSELNQLELEL   75 (140)
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788888999999999999999998888888887777766543            3356777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        258 DDYRIKLEIQSKQMEDLELKLNSLEET  284 (684)
Q Consensus       258 ~~~~~~~~~le~el~~l~~k~~~L~~~  284 (684)
                      +.++.....+.+.+...+.++.+|...
T Consensus        76 ~~l~sEk~~L~k~lq~~q~kv~eLE~~  102 (140)
T PF10473_consen   76 DTLRSEKENLDKELQKKQEKVSELESL  102 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777766666643

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG1029|consensus

Probab=95.80  E-value=5  Score=46.10  Aligned_cols=29  Identities=24%  Similarity=0.436  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        391 LQEKVTSLQREKEKLIVERDSLKETNEEL  419 (684)
Q Consensus       391 L~~~l~~le~e~e~l~~e~~~L~e~~~eL  419 (684)
                      .+..++.+...++....+++.|+.++.|+
T Consensus       470 ~kt~ie~~~~q~e~~isei~qlqarikE~  498 (1118)
T KOG1029|consen  470 QKTEIEEVTKQRELMISEIDQLQARIKEL  498 (1118)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.78  E-value=2.5  Score=42.52  Aligned_cols=52  Identities=17%  Similarity=0.263  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q psy11659        323 VDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEE  377 (684)
Q Consensus       323 ~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~  377 (684)
                      .+|...+..+..+...+...+..+.+.+...   ...++.++..+..++..+.+.
T Consensus        92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l---~~~i~~l~~~~~~~e~~~~e~  143 (239)
T COG1579          92 RALNIEIQIAKERINSLEDELAELMEEIEKL---EKEIEDLKERLERLEKNLAEA  143 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444433   333333334444444433333

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=95.73  E-value=5.3  Score=45.96  Aligned_cols=30  Identities=27%  Similarity=0.286  Sum_probs=24.2

Q ss_pred             CCCCCCCccccccHHH---HHHHHHhhCCCcCC
Q psy11659         24 LVAPHQSLADITDGVA---MAQALHQIAPEWFS   53 (684)
Q Consensus        24 ~~~~~~~~~dL~dG~~---l~~vl~~idp~~f~   53 (684)
                      ++.++.++.+++...+   ...+|..|||+..+
T Consensus        19 ~~~~~~sl~~ft~e~~v~~~~~cL~~I~p~~~~   51 (594)
T PF05667_consen   19 IPEDVQSLKQFTTELLVEAVVRCLRVIDPSLGS   51 (594)
T ss_pred             ccCCcccHhhCCHHHHHHHHHHHHHHhCccccC
Confidence            5677889999988875   56899999998844

>KOG0980|consensus

Probab=95.69  E-value=6  Score=46.26  Aligned_cols=54  Identities=11%  Similarity=0.217  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        357 KSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERD  410 (684)
Q Consensus       357 r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~  410 (684)
                      ...++.++.++.-+..++......+..+.........++.++..+++++-.+..
T Consensus       493 ~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~  546 (980)
T KOG0980|consen  493 AKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELV  546 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            444555555555555555555555555555566666677777777776655443

>PRK09039 hypothetical protein; Validated

Probab=95.58  E-value=1.5  Score=47.00  Aligned_cols=52  Identities=13%  Similarity=0.159  Sum_probs=25.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy11659        525 VKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKN  576 (684)
Q Consensus       525 ~kl~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~  576 (684)
                      .++.....++...+..+.+..++..-+..++..|+..+..++..+...+.+.
T Consensus       116 ~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~  167 (343)
T PRK09039        116 GRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD  167 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444555555555555555554444444

>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

Probab=95.50  E-value=0.05  Score=47.51  Aligned_cols=93  Identities=18%  Similarity=0.288  Sum_probs=59.0

Q ss_pred             HHHHHHHHhhcCCCC---CCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHH
Q psy11659         12 CNILLKWLQTFTLVA---PHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYF   87 (684)
Q Consensus        12 ~~~l~~W~~tf~~~~---~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~   87 (684)
                      ...++.|+|.+--..   ++.+ .++|.||++|..+++.+.|..++...   +  . .. +..-++.|+...++.+..  
T Consensus         3 ~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~---~--~-~~-~~~~~~~Ni~~~l~~~~~--   73 (107)
T cd00014           3 KEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKK---I--N-PL-SRFKRLENINLALNFAEK--   73 (107)
T ss_pred             HHHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHCcccccccc---c--c-cc-chhhHHHHHHHHHHHHHH--
Confidence            457999999874222   2333 48999999999999999998875421   1  1 12 344566888888776655  


Q ss_pred             HHhhcccccCccccchhHHhhcCCHHHHHHHH
Q psy11659         88 QEYFDQALGEFGKVDVHKIVENIDAKELARLM  119 (684)
Q Consensus        88 ~~~l~~~~~~~~~pd~~~ia~~~d~~el~~ll  119 (684)
                         +|.+..   .+.+.-|.+.+|...+..++
T Consensus        74 ---~gi~~~---~~~~~Dl~~~~n~~~vl~~l   99 (107)
T cd00014          74 ---LGVPVV---NFDAEDLVEDGDEKLVLGLL   99 (107)
T ss_pred             ---cCCcee---ccCHHHHhhCCCceeeHHHH
Confidence               565422   34455566556655544433

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.47  E-value=11  Score=48.00  Aligned_cols=34  Identities=29%  Similarity=0.380  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11659        194 QRCMELDMQVSMLQEEKSCLVEEKRRLEERFQEN  227 (684)
Q Consensus       194 ~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~  227 (684)
                      .++.+|+..+..|..+...+..++..+..+...+
T Consensus       742 ~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L  775 (1353)
T TIGR02680       742 RRIAELDARLAAVDDELAELARELRALGARQRAL  775 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566666667777666666666666666555544

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=95.31  E-value=4  Score=41.87  Aligned_cols=47  Identities=13%  Similarity=0.318  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy11659        357 KSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKE  403 (684)
Q Consensus       357 r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e  403 (684)
                      ..++..++.+..-|..++.......++++.++.....++.++-.+.+
T Consensus        62 ~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~d  108 (305)
T PF14915_consen   62 NGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHD  108 (305)
T ss_pred             hhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            34444444445555555555555556666666666666655555444

>KOG0963|consensus

Probab=95.28  E-value=6.7  Score=44.24  Aligned_cols=28  Identities=29%  Similarity=0.265  Sum_probs=18.3

Q ss_pred             hHHHHHHHHHhHHhhhhhHHHHHHHHhh
Q psy11659        599 ALNELKNLRKKNDDKDKMLDDLEKTLEK  626 (684)
Q Consensus       599 ~~~ei~~Lr~ql~e~e~~i~~LE~~~~~  626 (684)
                      ++.+...||........++..+..-...
T Consensus       388 lq~e~a~Lr~~n~~~~~~~~~~~~~~~e  415 (629)
T KOG0963|consen  388 LQNENASLRVANSGLSGRITELSKKGEE  415 (629)
T ss_pred             hhHHHHHHhccccccchhHHHHHhhhhh
Confidence            5677777777777777766555544333

>PRK09039 hypothetical protein; Validated

Probab=95.27  E-value=5.2  Score=42.91  Aligned_cols=25  Identities=20%  Similarity=0.408  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659        357 KSQVDMYKKQMSELYNQFNEETKRA  381 (684)
Q Consensus       357 r~~le~~k~qi~~l~~~l~e~~~~~  381 (684)
                      +.+++.++.++..++..+.....+.
T Consensus       143 ~~qI~aLr~Qla~le~~L~~ae~~~  167 (343)
T PRK09039        143 NQQIAALRRQLAALEAALDASEKRD  167 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555444444433

>KOG0980|consensus

Probab=95.22  E-value=8.5  Score=45.06  Aligned_cols=15  Identities=7%  Similarity=0.324  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHh
Q psy11659         76 LKKINEGIVDYFQEY   90 (684)
Q Consensus        76 l~~i~~~i~~y~~~~   90 (684)
                      ++.++..+..||.++
T Consensus       228 f~~qf~rLk~FY~~~  242 (980)
T KOG0980|consen  228 FHTQFERLKQFYADC  242 (980)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            345555666666553

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=95.21  E-value=4.6  Score=41.95  Aligned_cols=50  Identities=10%  Similarity=0.157  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        237 SSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAG  286 (684)
Q Consensus       237 ~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~~~a~  286 (684)
                      ..++..+..++.+...+....+-++.++..|..++..++...-.+...+.
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aE   72 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAE   72 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555554444444444466677777777777777776666654433

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=95.21  E-value=4.6  Score=41.94  Aligned_cols=40  Identities=23%  Similarity=0.338  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        260 YRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETA  302 (684)
Q Consensus       260 ~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~  302 (684)
                      ++..+..|..+...++.++....   ..+..|..++..+|..+
T Consensus        25 l~~~~~sL~qen~~Lk~El~~ek---~~~~~L~~e~~~lr~~s   64 (310)
T PF09755_consen   25 LRKRIESLQQENRVLKRELETEK---ARCKHLQEENRALREAS   64 (310)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            33344444444444444333332   44555566666665544

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=95.12  E-value=6.1  Score=42.86  Aligned_cols=68  Identities=22%  Similarity=0.381  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659        283 ETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEE----LVDLKKQVKQLESKNLSYIQQTLDLEEELKKN  353 (684)
Q Consensus       283 ~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~klee----l~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~  353 (684)
                      +....++.|+.....++.   ...++++-+..+|.|.++    +..++..+...++....+......|..++++-
T Consensus       292 k~s~~i~~l~ek~r~l~~---D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq  363 (622)
T COG5185         292 KISQKIKTLREKWRALKS---DSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQ  363 (622)
T ss_pred             HHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence            333334444444444433   223444444444444332    33344455555555555555555555555544

>KOG0982|consensus

Probab=94.93  E-value=6.5  Score=42.18  Aligned_cols=38  Identities=24%  Similarity=0.362  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Q psy11659        188 ARDQMAQRCMELDMQVSMLQE-------EKSCLVEEKRRLEERFQ  225 (684)
Q Consensus       188 e~d~l~~~~~el~~q~~~L~~-------e~~~l~~E~~~l~~~~~  225 (684)
                      .+.++..++.-|++.|.+|..       ...++.+|+-.|..+..
T Consensus       216 ~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h  260 (502)
T KOG0982|consen  216 ERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYH  260 (502)
T ss_pred             hhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHH
Confidence            455566666666666666654       35566777766655443

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=94.84  E-value=8.1  Score=42.85  Aligned_cols=155  Identities=12%  Similarity=0.163  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHH
Q psy11659        449 TELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKL---DDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKV  525 (684)
Q Consensus       449 ~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~L---e~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~~~~~lk~  525 (684)
                      +.+..-+.+++..|..|+        .+++.++...   +........++++...+...+..+...++..          
T Consensus       312 ~~l~~~l~k~ke~n~~L~--------~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~----------  373 (570)
T COG4477         312 PILPDYLEKAKENNEHLK--------EEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQ----------  373 (570)
T ss_pred             cchHHHHHHHHHHHHHHH--------HHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------
Confidence            456677888888888887        5655544332   2222333344444443333333333322221          


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhchh-------
Q psy11659        526 KIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVA-------  598 (684)
Q Consensus       526 kl~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~~-------  598 (684)
                           ..-|..++..+..++..+.+...+...++..|..+.+|=....+.+..+..+..++-+-++..+-| |       
T Consensus       374 -----~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~nLP-GlPe~~l~  447 (570)
T COG4477         374 -----EVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKSNLP-GLPETFLS  447 (570)
T ss_pred             -----cccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHH
Confidence                 112233333444444444444455555566666665555544455544444444444444443333 3       


Q ss_pred             ----hHHHHHHHHHhHHhhhhhHHHHHHHHhhH
Q psy11659        599 ----ALNELKNLRKKNDDKDKMLDDLEKTLEKK  627 (684)
Q Consensus       599 ----~~~ei~~Lr~ql~e~e~~i~~LE~~~~~~  627 (684)
                          ....++++-.+|.++--.+..+-...+.+
T Consensus       448 l~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a  480 (570)
T COG4477         448 LFFTAGHEIQDLMKELSEVPINMEAVSALVDIA  480 (570)
T ss_pred             HHHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHH
Confidence                35567777777777665555554444443

>KOG1899|consensus

Probab=94.77  E-value=2.3  Score=47.52  Aligned_cols=187  Identities=13%  Similarity=0.178  Sum_probs=103.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHhH
Q psy11659        448 ITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKI  527 (684)
Q Consensus       448 ~~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~~~~~lk~kl  527 (684)
                      ++++++++.||+.....|.        -++..|..+++..+.++..||.-+..-..                      +|
T Consensus       106 ~~~yQerLaRLe~dkesL~--------LQvsvLteqVeaQgEKIrDLE~cie~kr~----------------------kL  155 (861)
T KOG1899|consen  106 YPEYQERLARLEMDKESLQ--------LQVSVLTEQVEAQGEKIRDLETCIEEKRN----------------------KL  155 (861)
T ss_pred             chHHHHHHHHHhcchhhhe--------ehHHHHHHHHHHhhhhHHHHHHHHHHHHh----------------------hh
Confidence            5889999999999888887        56666666666555555555443322221                      22


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh----chhhhhch-----h
Q psy11659        528 FELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKL----LDPTVQNV-----A  598 (684)
Q Consensus       528 ~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~----l~~~~~~~-----~  598 (684)
                      ...++-++..--....|+.|.-|+-.++.+|.-.+.++++|-.+.|.+++..-....++-+.    ++.++...     +
T Consensus       156 natEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klks  235 (861)
T KOG1899|consen  156 NATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKS  235 (861)
T ss_pred             chHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            22222233322233556666556666777777777777777777777766655555444321    12211111     1


Q ss_pred             hHHHHHHHHHhHHhhhhhHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHhHhhhhhcccCCCCCcchhhhhhhhh
Q psy11659        599 ALNELKNLRKKNDDKDKMLDDLEKTLEKK---EQQEKLIATAFYNLALQKQRQTADNRLASITFSQQPQSFLTKQRQAS  674 (684)
Q Consensus       599 ~~~ei~~Lr~ql~e~e~~i~~LE~~~~~~---~~E~~l~~~a~y~~~~~~~~~~~~~r~~~~~~~~~~~sfl~~qr~~~  674 (684)
                      ...++.-|++|+.+++..+..|-..+-..   +-|.+-.--       .--++++++-+++.   ..---|.+-+|+.+
T Consensus       236 tk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~~~rd-------~~lk~a~eslm~an---e~kdr~ie~lr~~l  304 (861)
T KOG1899|consen  236 TKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGEHKSLRD-------NTLKNALESLMRAN---EQKDRFIESLRNYL  304 (861)
T ss_pred             ccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhcccchhhHH-------HHHHHHHHHHHhhc---hhhhhHHHHHHHHh
Confidence            45678889999998887665554443322   111111000       01234555554332   34556777777766

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=94.72  E-value=9.9  Score=43.32  Aligned_cols=38  Identities=21%  Similarity=0.227  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy11659        359 QVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVT  396 (684)
Q Consensus       359 ~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~  396 (684)
                      .+..++..+..|+.-+.-...+...++..++.+.-.+.
T Consensus       350 ~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLq  387 (786)
T PF05483_consen  350 VVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQ  387 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            34555556667776666666666666665555544443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=94.65  E-value=11  Score=43.33  Aligned_cols=29  Identities=31%  Similarity=0.297  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11659        199 LDMQVSMLQEEKSCLVEEKRRLEERFQEN  227 (684)
Q Consensus       199 l~~q~~~L~~e~~~l~~E~~~l~~~~~~~  227 (684)
                      |...|..|.++++.|..-.+-|..+++++
T Consensus       247 L~~tVq~L~edR~~L~~T~ELLqVRvqSL  275 (739)
T PF07111_consen  247 LLETVQHLQEDRDALQATAELLQVRVQSL  275 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455667777888877777777777654

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>smart00787 Spc7 Spc7 kinetochore protein

Probab=94.53  E-value=7.5  Score=41.07  Aligned_cols=55  Identities=18%  Similarity=0.301  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q psy11659        366 QMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEK----LIVERDSLKETNEELK  420 (684)
Q Consensus       366 qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~----l~~e~~~L~e~~~eL~  420 (684)
                      .+.+++.++......+......+..+...+.+++..++.    -..+...|+..+.-|+
T Consensus       226 ~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le  284 (312)
T smart00787      226 KLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQ  284 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            333444444444444444444444455555555443322    2234455555555554

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>smart00033 CH Calponin homology domain

Probab=94.34  E-value=0.11  Score=44.81  Aligned_cols=68  Identities=21%  Similarity=0.344  Sum_probs=46.1

Q ss_pred             HHHHHHHhhcCCC---CCCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHH
Q psy11659         13 NILLKWLQTFTLV---APHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDY   86 (684)
Q Consensus        13 ~~l~~W~~tf~~~---~~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y   86 (684)
                      .+++.|+|..-..   .++.+ .++|.||++|..+++.+.|..++...   +.  .+. +-.-++.|+...+..+..+
T Consensus         3 ~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~---~~--~~~-~~~~~~~Ni~~~l~~~~~~   74 (103)
T smart00033        3 KTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKK---VN--ASL-SRFKKIENINLALSFAEKL   74 (103)
T ss_pred             HHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCChhh---cc--ccc-cHHHHHHhHHHHHHHHHHc
Confidence            5799999987422   23333 57999999999999999998876522   11  122 2344567887777755544

Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.

>PF13514 AAA_27: AAA domain

Probab=94.25  E-value=20  Score=44.95  Aligned_cols=43  Identities=19%  Similarity=0.207  Sum_probs=27.5

Q ss_pred             HHHHHHHHHhHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy11659        600 LNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLIATAFYNLA  642 (684)
Q Consensus       600 ~~ei~~Lr~ql~e~e~~i~~LE~~~~~~~~E~~l~~~a~y~~~  642 (684)
                      ..++..++.++......+..+.......+.+..=+-++|-.+.
T Consensus       549 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~  591 (1111)
T PF13514_consen  549 AARLAQLRARLEEARARLARAQARLAAAEAALAALEAAWAALW  591 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666666666666666666666666666777776654

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=94.15  E-value=16  Score=43.31  Aligned_cols=51  Identities=18%  Similarity=0.109  Sum_probs=32.7

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11659        540 QINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLL  590 (684)
Q Consensus       540 ~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l  590 (684)
                      ...+|-.++-.+......|...|.++..++......|-+...+...+...+
T Consensus       259 ~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql  309 (769)
T PF05911_consen  259 ESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL  309 (769)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555566677777788888888766666666666665555555

The function of this family is unknown.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=94.02  E-value=6.8  Score=38.64  Aligned_cols=113  Identities=19%  Similarity=0.283  Sum_probs=81.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhchhhHHHHH
Q psy11659        525 VKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELK  604 (684)
Q Consensus       525 ~kl~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~~~~~ei~  604 (684)
                      .-..+....|++.+.-+..+..--+.+...+.+....+..-+.-...+..-...-++.|..-|..+.....     .++.
T Consensus        90 ~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~-----~e~~  164 (207)
T PF05010_consen   90 KSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQ-----AELL  164 (207)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHH
Confidence            33446666677777777766654445566666777777776666666666666777777777777776544     4889


Q ss_pred             HHHHhHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy11659        605 NLRKKNDDKDKMLDDLEKTLEKKEQQEKLIATAFYNLA  642 (684)
Q Consensus       605 ~Lr~ql~e~e~~i~~LE~~~~~~~~E~~l~~~a~y~~~  642 (684)
                      .|+.+|.-.+-++..|+..+++...|+.=++.-+..|-
T Consensus       165 aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI  202 (207)
T PF05010_consen  165 ALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELI  202 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998666666666665553

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=94.01  E-value=10  Score=40.49  Aligned_cols=64  Identities=20%  Similarity=0.354  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q psy11659        357 KSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEK----LIVERDSLKETNEELK  420 (684)
Q Consensus       357 r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~----l~~e~~~L~e~~~eL~  420 (684)
                      ...++..++.+.+++.++......+..+...+..+...+..+++.++.    -..++..|+..+..|+
T Consensus       222 ~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le  289 (325)
T PF08317_consen  222 KEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALE  289 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            334444444444444444444444555555555555555555544332    1233444555554443

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=93.89  E-value=15  Score=42.00  Aligned_cols=14  Identities=21%  Similarity=0.411  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHhh
Q psy11659        453 QKLVRLTHENNMLQ  466 (684)
Q Consensus       453 ~~l~~Le~Enk~Lr  466 (684)
                      ..+..|+..+..||
T Consensus       534 kqie~Lee~~~~Lr  547 (786)
T PF05483_consen  534 KQIENLEETNTQLR  547 (786)
T ss_pred             HHHHHHHHHHHHHH
Confidence            45666777777666

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=93.77  E-value=7.3  Score=38.13  Aligned_cols=21  Identities=24%  Similarity=0.178  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy11659        396 TSLQREKEKLIVERDSLKETN  416 (684)
Q Consensus       396 ~~le~e~e~l~~e~~~L~e~~  416 (684)
                      ..+..+...+..++..|...+
T Consensus       167 ~~~~~~~~~l~~ei~~L~~kl  187 (194)
T PF15619_consen  167 KEAQEEVKSLQEEIQRLNQKL  187 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333344343333

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.72  E-value=0.69  Score=45.41  Aligned_cols=65  Identities=28%  Similarity=0.365  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy11659        328 QVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKV  395 (684)
Q Consensus       328 ~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l  395 (684)
                      .+..++..+..+..++..++.+++..   ...++.+..++..++-.+.-...+..+++.|+..|-++.
T Consensus       117 ~l~~l~~~~~~L~~~~~~l~~~l~ek---~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw  181 (194)
T PF08614_consen  117 RLAELEAELAQLEEKIKDLEEELKEK---NKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW  181 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444   333444444444444444444444445555555444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG1853|consensus

Probab=93.70  E-value=8.2  Score=38.45  Aligned_cols=29  Identities=14%  Similarity=0.136  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy11659        368 SELYNQFNEETKRADKSEFENKKLQEKVT  396 (684)
Q Consensus       368 ~~l~~~l~e~~~~~~~le~e~~~L~~~l~  396 (684)
                      .++..+++.+..++.-|+.++..-+.-+.
T Consensus       136 eDfeqrLnqAIErnAfLESELdEke~lle  164 (333)
T KOG1853|consen  136 EDFEQRLNQAIERNAFLESELDEKEVLLE  164 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            45555566555555555555443333333

>KOG0979|consensus

Probab=93.70  E-value=20  Score=42.88  Aligned_cols=89  Identities=21%  Similarity=0.281  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11659        326 KKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKL  405 (684)
Q Consensus       326 ~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l  405 (684)
                      +..++.+.+...-....+..|+.+....   .+++......+.+....+.+.-.+....+.+...+...++.+.+.-+..
T Consensus       261 k~~~r~l~k~~~pi~~~~eeLe~~~~et---~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~r  337 (1072)
T KOG0979|consen  261 KKELRKLEKEIKPIEDKKEELESEKKET---RSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKR  337 (1072)
T ss_pred             HHHHHHHHHhhhhhhhhhhhHHhHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444455555433333   4444444443433333333333334444444444444544444444444


Q ss_pred             HHHHHHHHHHHH
Q psy11659        406 IVERDSLKETNE  417 (684)
Q Consensus       406 ~~e~~~L~e~~~  417 (684)
                      ...+...++.+.
T Consensus       338 q~~i~~~~k~i~  349 (1072)
T KOG0979|consen  338 QKRIEKAKKMIL  349 (1072)
T ss_pred             HHHHHHHHHHHH
Confidence            444444444333

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=93.69  E-value=19  Score=42.65  Aligned_cols=82  Identities=26%  Similarity=0.277  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH-HHHHHHHHHHHHHHhhhhHHH
Q psy11659        310 GIIETYKKKAE-ELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQ-MSELYNQFNEETKRADKSEFE  387 (684)
Q Consensus       310 ~~le~~k~kle-el~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~q-i~~l~~~l~e~~~~~~~le~e  387 (684)
                      ..+...+...+ ++..+..+++..+..|..+.-++..+.+++.-.    ..--.|-.+ .....++.-+-.+++.+||.|
T Consensus       123 ~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir----~~E~~~~~~~ae~a~kqhle~vkkiakLEaE  198 (769)
T PF05911_consen  123 AELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIR----NEEREYSRRAAEAASKQHLESVKKIAKLEAE  198 (769)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333343333 455666777777777777777777777666532    222223333 334566677777889999999


Q ss_pred             HHHHHHHH
Q psy11659        388 NKKLQEKV  395 (684)
Q Consensus       388 ~~~L~~~l  395 (684)
                      +++|+.-+
T Consensus       199 C~rLr~l~  206 (769)
T PF05911_consen  199 CQRLRALV  206 (769)
T ss_pred             HHHHHHHH
Confidence            98887655

The function of this family is unknown.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=93.67  E-value=5.5  Score=36.39  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy11659        321 ELVDLKKQVKQLESKNLSYIQQ  342 (684)
Q Consensus       321 el~~l~~~~~~Le~~~~~l~~~  342 (684)
                      ++.++..++..|...|.-+...
T Consensus       106 e~~~~~~r~~dL~~QN~lLh~Q  127 (132)
T PF07926_consen  106 ELSELEQRIEDLNEQNKLLHDQ  127 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555544433

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG0946|consensus

Probab=93.60  E-value=18  Score=42.11  Aligned_cols=64  Identities=16%  Similarity=0.202  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        237 SSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAE  303 (684)
Q Consensus       237 ~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~  303 (684)
                      ..+......++..+.++..++..++....++..+..+++.++....   .....++++++.++....
T Consensus       653 e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~---s~hsql~~q~~~Lk~qLg  716 (970)
T KOG0946|consen  653 EELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFI---SEHSQLKDQLDLLKNQLG  716 (970)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Confidence            3344444455555555555566666666666666666666655443   566777778877776554

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=93.44  E-value=8.2  Score=37.68  Aligned_cols=143  Identities=18%  Similarity=0.196  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy11659        317 KKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVT  396 (684)
Q Consensus       317 ~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~  396 (684)
                      .|-.+++-|+.++++.......-...+..|..+++..   +..+......+..++..+......+...+.+..+......
T Consensus         7 qk~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~---~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~   83 (202)
T PF06818_consen    7 QKSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLREL---RAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAE   83 (202)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHH
Confidence            3444555666666666666665556666666666665   6666666666666666555555555555555555555554


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhcccc--cccccccCChHHHHHHHHHHHHHHHHhh
Q psy11659        397 SLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGEN--LDLSEDSVPITELRQKLVRLTHENNMLQ  466 (684)
Q Consensus       397 ~le~e~e~l~~e~~~L~e~~~eL~~~q~~~~~~~~l~~~~~~--~~~~~e~~~~~el~~~l~~Le~Enk~Lr  466 (684)
                      -+......+..++..|+.....+.........   ++..+..  ....... ....++..+.+|..|....+
T Consensus        84 lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~---l~~~deak~~~~~~~~-~~~~l~~e~erL~aeL~~er  151 (202)
T PF06818_consen   84 LLREKLGQLEAELAELREELACAGRLKRQCQL---LSESDEAKAQRQAGED-ELGSLRREVERLRAELQRER  151 (202)
T ss_pred             HhhhhhhhhHHHHHHHHHHHHhhccchhhhcc---ccccchhHHhhccccc-cchhHHHHHHHHHHHHHHHH
Confidence            44444444444455554444332000000000   1100000  0000001 12668888888888888777

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>KOG4593|consensus

Probab=93.26  E-value=19  Score=41.32  Aligned_cols=78  Identities=23%  Similarity=0.267  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        266 IQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQT  343 (684)
Q Consensus       266 ~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kleel~~l~~~~~~Le~~~~~l~~~~  343 (684)
                      +++.....++.++.++..+......+..++..+++..+.+.-+..++++|..++..+..++.++-.|+-.|..+..+.
T Consensus       238 ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL  315 (716)
T KOG4593|consen  238 ELEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKL  315 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            455555666666777777777777888888878787777788888888888888888888888888877777665443

>KOG1003|consensus

Probab=92.98  E-value=9.1  Score=36.88  Aligned_cols=72  Identities=21%  Similarity=0.279  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy11659        327 KQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQRE  401 (684)
Q Consensus       327 ~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e  401 (684)
                      .++.+|.+....+...+..|...-..+   -...+.|+.++..+..++-+...+..-.+.....|...+++++..
T Consensus       109 s~~~eLeEe~~~~~~nlk~l~~~ee~~---~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~k  180 (205)
T KOG1003|consen  109 SQSEELEEDLRILDSNLKSLSAKEEKL---EQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEK  180 (205)
T ss_pred             HHHHHHHHHHHHhHhHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHh
Confidence            445555555555554444444443333   455666666666666666666555555554444444444444433

>KOG1853|consensus

Probab=92.92  E-value=11  Score=37.61  Aligned_cols=41  Identities=22%  Similarity=0.242  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        338 SYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEET  378 (684)
Q Consensus       338 ~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~  378 (684)
                      ...++++.||.++.....+-..+-.++.+..+|...+.-..
T Consensus       144 qAIErnAfLESELdEke~llesvqRLkdEardlrqelavr~  184 (333)
T KOG1853|consen  144 QAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELAVRT  184 (333)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555554444444455555555555555544433

>KOG1003|consensus

Probab=92.81  E-value=9.6  Score=36.72  Aligned_cols=14  Identities=36%  Similarity=0.408  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHh
Q psy11659        340 IQQTLDLEEELKKN  353 (684)
Q Consensus       340 ~~~~~~LEeel~~~  353 (684)
                      ...+..|+++++-.
T Consensus       108 Es~~~eLeEe~~~~  121 (205)
T KOG1003|consen  108 ESQSEELEEDLRIL  121 (205)
T ss_pred             HHHHHHHHHHHHHh
Confidence            33444555554444

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=92.80  E-value=4.8  Score=36.05  Aligned_cols=9  Identities=11%  Similarity=0.250  Sum_probs=3.3

Q ss_pred             HHHHHHHHH
Q psy11659        306 EKYEGIIET  314 (684)
Q Consensus       306 ~k~e~~le~  314 (684)
                      ..+...+..
T Consensus        99 eEL~~Dv~D  107 (120)
T PF12325_consen   99 EELRADVQD  107 (120)
T ss_pred             HHHHHHHHH
Confidence            333333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0982|consensus

Probab=92.72  E-value=17  Score=39.22  Aligned_cols=30  Identities=10%  Similarity=0.090  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q psy11659        555 IEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFK  588 (684)
Q Consensus       555 ~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~  588 (684)
                      .++|..++...+..-    -|++.|+..+--.|-
T Consensus       463 qdeLmqafqeqeeiN----fRL~~yid~iilnii  492 (502)
T KOG0982|consen  463 QDELMQAFQEQEEIN----FRLKFYIDFIILNII  492 (502)
T ss_pred             HHHHHHHHHHHHHhh----hHHHHHHhHHHHHHH
Confidence            345555555443221    367777776654443

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=92.68  E-value=16  Score=38.85  Aligned_cols=16  Identities=13%  Similarity=0.368  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHhhcc
Q psy11659         78 KINEGIVDYFQEYFDQ   93 (684)
Q Consensus        78 ~i~~~i~~y~~~~l~~   93 (684)
                      -|+.+|..|.-|.+|.
T Consensus        10 lvLgGVIA~~gD~ig~   25 (499)
T COG4372          10 LVLGGVIAYAGDTIGK   25 (499)
T ss_pred             HHHHhHHHHHhhHHHh
Confidence            3556666666555553

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=92.64  E-value=11  Score=37.08  Aligned_cols=81  Identities=26%  Similarity=0.313  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        263 KLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQ  342 (684)
Q Consensus       263 ~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kleel~~l~~~~~~Le~~~~~l~~~  342 (684)
                      +....++.+.++..++..|.   .....++.++..|+.......+-...+...+.++..   +..++..|+-....+..+
T Consensus        42 ~e~~~~k~m~ei~~eN~~L~---epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~---~ek~l~~Lk~e~evL~qr  115 (201)
T PF13851_consen   42 KEERNEKLMAEISQENKRLS---EPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKE---LEKELKDLKWEHEVLEQR  115 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence            33344445555555554444   445555555555555444444444444444444332   234445555554444444


Q ss_pred             HHHHHHH
Q psy11659        343 TLDLEEE  349 (684)
Q Consensus       343 ~~~LEee  349 (684)
                      ...++.+
T Consensus       116 ~~kle~E  122 (201)
T PF13851_consen  116 FEKLEQE  122 (201)
T ss_pred             HHHHHHH
Confidence            4444444

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=91.98  E-value=31  Score=40.61  Aligned_cols=12  Identities=17%  Similarity=0.202  Sum_probs=8.1

Q ss_pred             CCCCcchhhhhh
Q psy11659        660 SQQPQSFLTKQR  671 (684)
Q Consensus       660 ~~~~~sfl~~qr  671 (684)
                      .+.|-++|...|
T Consensus       580 iD~p~~~lD~~~  591 (650)
T TIGR03185       580 IDTPLGRLDSSH  591 (650)
T ss_pred             EcCCccccChHH
Confidence            467778887644

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=90.90  E-value=31  Score=38.53  Aligned_cols=18  Identities=22%  Similarity=0.337  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHhhchh
Q psy11659        575 KNRKYIEKANSAFKLLDP  592 (684)
Q Consensus       575 r~k~~~e~ak~~i~~l~~  592 (684)
                      .|+..++.|-.+++..+|
T Consensus       534 dY~~s~eia~qaLE~vEp  551 (570)
T COG4477         534 DYDASFEIASQALEKVEP  551 (570)
T ss_pred             chhHHHHHHHHHHhhhCC
Confidence            577888888888888887

>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins

Probab=90.86  E-value=0.31  Score=40.86  Aligned_cols=66  Identities=20%  Similarity=0.295  Sum_probs=43.5

Q ss_pred             cCCCCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHHHhhcccc
Q psy11659         22 FTLVAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYFDQAL   95 (684)
Q Consensus        22 f~~~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~~~l~~~~   95 (684)
                      .....++.++ .||+||++|..++|-..|...+-   ..|.-.+.- .-...+.|+..+.    +|..+.||...
T Consensus         7 ~~~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~---~~I~~~~~m-S~~~~l~N~~ll~----~~c~~~l~~~~   73 (85)
T PF11971_consen    7 APYFPPVEDLTQDLSDGRALCALIHFYCPQLLPL---EDICLKTTM-SQADSLYNLQLLN----SFCQSHLGFSC   73 (85)
T ss_pred             CCCCcchhhhhhhhccHHHHHHHHHHhCcceecH---hHcccccch-HHHHhhhhHHHHH----HHHHHHcCCCc
Confidence            3456678888 99999999999999999988764   234322222 2244556665544    46666666443

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=90.77  E-value=15  Score=37.16  Aligned_cols=80  Identities=28%  Similarity=0.331  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11659        305 VEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKS  384 (684)
Q Consensus       305 ~~k~e~~le~~k~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~l  384 (684)
                      +..++..+.+-|.|.++-   +..+-.|.-.+..+.+....++..-.++   -..+.....++.-+...+......++.+
T Consensus        41 leSlEAaLqKQKqK~e~e---k~e~s~LkREnq~l~e~c~~lek~rqKl---shdlq~Ke~qv~~lEgQl~s~Kkqie~L  114 (307)
T PF10481_consen   41 LESLEAALQKQKQKVEEE---KNEYSALKRENQSLMESCENLEKTRQKL---SHDLQVKESQVNFLEGQLNSCKKQIEKL  114 (307)
T ss_pred             HHHHHHHHHHHHHHHHHH---hhhhhhhhhhhhhHHHHHHHHHHHHHHh---hHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            344455666666664432   3444555555555555555555443333   3333333334444444444443333333


Q ss_pred             HHHHHH
Q psy11659        385 EFENKK  390 (684)
Q Consensus       385 e~e~~~  390 (684)
                      +.++++
T Consensus       115 eqelkr  120 (307)
T PF10481_consen  115 EQELKR  120 (307)
T ss_pred             HHHHHH
Confidence            333333

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=90.76  E-value=29  Score=37.94  Aligned_cols=17  Identities=0%  Similarity=-0.072  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy11659        632 KLIATAFYNLALQKQRQ  648 (684)
Q Consensus       632 ~l~~~a~y~~~~~~~~~  648 (684)
                      -=+|-.+|+..+.++=.
T Consensus       582 ~k~V~~v~~~~~~fk~~  598 (622)
T COG5185         582 HKQVIHVIDITSKFKIN  598 (622)
T ss_pred             HHHHHHHHHHHHHhhhh
Confidence            34567788888777643

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.75  E-value=9.6  Score=38.33  Aligned_cols=26  Identities=15%  Similarity=0.226  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659        328 QVKQLESKNLSYIQQTLDLEEELKKN  353 (684)
Q Consensus       328 ~~~~Le~~~~~l~~~~~~LEeel~~~  353 (684)
                      -+.++......|..+.....++|+.+
T Consensus        33 ~L~e~~kE~~~L~~Er~~h~eeLrqI   58 (230)
T PF10146_consen   33 CLEEYRKEMEELLQERMAHVEELRQI   58 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG0804|consensus

Probab=90.40  E-value=17  Score=39.43  Aligned_cols=10  Identities=10%  Similarity=0.541  Sum_probs=4.3

Q ss_pred             HHHHHHhhcc
Q psy11659         84 VDYFQEYFDQ   93 (684)
Q Consensus        84 ~~y~~~~l~~   93 (684)
                      ..||.+.-|.
T Consensus       129 ~~Fy~efNGk  138 (493)
T KOG0804|consen  129 DTFYEEFNGK  138 (493)
T ss_pred             HHHHHHcCCC
Confidence            3455443343

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=90.00  E-value=44  Score=38.94  Aligned_cols=37  Identities=24%  Similarity=0.225  Sum_probs=17.0

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        380 RADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETN  416 (684)
Q Consensus       380 ~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~  416 (684)
                      +++..+.|+.-|.-.+..-..|+.||+.-...|+..+
T Consensus       516 kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sm  552 (861)
T PF15254_consen  516 KLEASEKENQILGITLRQRDAEIERLRELTRTLQNSM  552 (861)
T ss_pred             hHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444555554444444444555444444444433

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.99  E-value=18  Score=36.47  Aligned_cols=32  Identities=9%  Similarity=0.358  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659        322 LVDLKKQVKQLESKNLSYIQQTLDLEEELKKN  353 (684)
Q Consensus       322 l~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~  353 (684)
                      +.++.+.+..|......+.+.+..+..++..+
T Consensus        34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~l   65 (230)
T PF10146_consen   34 LEEYRKEMEELLQERMAHVEELRQINQDINTL   65 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555666666666666666666665544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG2991|consensus

Probab=89.44  E-value=25  Score=35.26  Aligned_cols=41  Identities=22%  Similarity=0.234  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHH
Q psy11659        451 LRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMK  494 (684)
Q Consensus       451 l~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~L  494 (684)
                      |-.+..-|..||..|..+...   .+|++|...|.--+....+|
T Consensus       215 LMAKCR~L~qENeElG~q~s~---Gria~Le~eLAmQKs~seEl  255 (330)
T KOG2991|consen  215 LMAKCRTLQQENEELGHQASE---GRIAELEIELAMQKSQSEEL  255 (330)
T ss_pred             HHHHHHHHHHHHHHHHhhhhc---ccHHHHHHHHHHHHhhHHHH
Confidence            456777788999988632222   56666655554333333333

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.43  E-value=6.5  Score=38.51  Aligned_cols=115  Identities=23%  Similarity=0.262  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHhHH
Q psy11659        449 TELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIF  528 (684)
Q Consensus       449 ~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~~~~~lk~kl~  528 (684)
                      .++...+..++.|+..+.        ..-.++...|-+++.....++.........+..++..+..+.        .++.
T Consensus        70 ~~le~~~~~l~~ELael~--------r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~--------~~~~  133 (194)
T PF08614_consen   70 SSLEQKLAKLQEELAELY--------RSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLE--------EKIK  133 (194)
T ss_dssp             ----------------------------------------------------HHHHHHHHHHHHHHHH--------HHHH
T ss_pred             cccccccccccccccccc--------cccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH--------HHHH
Confidence            334445555555555544        111233333334444444444444444444444444333322        2223


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy11659        529 ELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKY  579 (684)
Q Consensus       529 e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~  579 (684)
                      ....++..+...+..+.-.+..+.-....++..+.+.+.|-..+-+|+-..
T Consensus       134 ~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~  184 (194)
T PF08614_consen  134 DLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR  184 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444333333333444555555555555555555554433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=89.27  E-value=57  Score=39.14  Aligned_cols=19  Identities=26%  Similarity=0.307  Sum_probs=12.6

Q ss_pred             hHHHHHHHHHHHHHHHHhh
Q psy11659        448 ITELRQKLVRLTHENNMLQ  466 (684)
Q Consensus       448 ~~el~~~l~~Le~Enk~Lr  466 (684)
                      +.+++.++..++.+...+.
T Consensus       290 i~~L~~~l~~l~~~~~~l~  308 (754)
T TIGR01005       290 IQRLRERQAELRATIADLS  308 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4667777777776666655

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF13514 AAA_27: AAA domain

Probab=89.16  E-value=72  Score=40.18  Aligned_cols=41  Identities=17%  Similarity=0.230  Sum_probs=25.7

Q ss_pred             hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKER  515 (684)
Q Consensus       475 ~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l  515 (684)
                      .++..++..++........+......+......+...+...
T Consensus       550 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~  590 (1111)
T PF13514_consen  550 ARLAQLRARLEEARARLARAQARLAAAEAALAALEAAWAAL  590 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556666666666666666666666666666666665

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.05  E-value=8.1  Score=40.90  Aligned_cols=33  Identities=18%  Similarity=0.287  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        388 NKKLQEKVTSLQREKEKLIVERDSLKETNEELK  420 (684)
Q Consensus       388 ~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~  420 (684)
                      ...+.-.+..+..+.+.+..........++.|+
T Consensus       101 ~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~  133 (314)
T PF04111_consen  101 YNELQLELIEFQEERDSLKNQYEYASNQLDRLR  133 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444455555555555555555555443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG0978|consensus

Probab=88.88  E-value=53  Score=38.30  Aligned_cols=75  Identities=19%  Similarity=0.300  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhch--------hhHHHHHHHHHhHHhhhhhHHHHHHH
Q psy11659        552 GKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNV--------AALNELKNLRKKNDDKDKMLDDLEKT  623 (684)
Q Consensus       552 ~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~--------~~~~ei~~Lr~ql~e~e~~i~~LE~~  623 (684)
                      ...+..+....+.....+..++++.+.........++.+......+        .+...+..|+.++......++.++..
T Consensus       509 ~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~  588 (698)
T KOG0978|consen  509 EEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQ  588 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444455555555555555555544443332211        13444555555555555555555544


Q ss_pred             Hhh
Q psy11659        624 LEK  626 (684)
Q Consensus       624 ~~~  626 (684)
                      +..
T Consensus       589 ~~e  591 (698)
T KOG0978|consen  589 YAE  591 (698)
T ss_pred             HHH
Confidence            443

>PRK10884 SH3 domain-containing protein; Provisional

Probab=88.31  E-value=9.1  Score=37.84  Aligned_cols=40  Identities=18%  Similarity=0.185  Sum_probs=23.8

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        377 ETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETN  416 (684)
Q Consensus       377 ~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~  416 (684)
                      ....+..++.++..|++++..+..+.+.+..+.+.++..+
T Consensus       130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~  169 (206)
T PRK10884        130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI  169 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444666666677777776666666666666555433

>KOG0018|consensus

Probab=88.14  E-value=70  Score=38.79  Aligned_cols=55  Identities=20%  Similarity=0.336  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        364 KKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEE  418 (684)
Q Consensus       364 k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~e  418 (684)
                      +.....+..++......+...+.....+.+.++.+++++..+..-...+...+++
T Consensus       295 ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~  349 (1141)
T KOG0018|consen  295 KENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEE  349 (1141)
T ss_pred             chhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455555555555555555555555655555555555445555554443

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=87.93  E-value=33  Score=34.83  Aligned_cols=27  Identities=41%  Similarity=0.369  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659        327 KQVKQLESKNLSYIQQTLDLEEELKKN  353 (684)
Q Consensus       327 ~~~~~Le~~~~~l~~~~~~LEeel~~~  353 (684)
                      .+|.-++.........+..|+.+++..
T Consensus        95 ~qv~~lEgQl~s~Kkqie~Leqelkr~  121 (307)
T PF10481_consen   95 SQVNFLEGQLNSCKKQIEKLEQELKRC  121 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=87.66  E-value=39  Score=35.31  Aligned_cols=44  Identities=9%  Similarity=0.083  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11659        338 SYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKS  384 (684)
Q Consensus       338 ~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~l  384 (684)
                      .+.+++..++-++..+   ..++.+...+.+.|.+++.+.......|
T Consensus       138 ~~~EEn~~lqlqL~~l---~~e~~Ekeeesq~LnrELaE~layqq~L  181 (401)
T PF06785_consen  138 HLREENQCLQLQLDAL---QQECGEKEEESQTLNRELAEALAYQQEL  181 (401)
T ss_pred             HHHHHHHHHHHhHHHH---HHHHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444333333   3334334444455555555544443333

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=87.46  E-value=81  Score=38.76  Aligned_cols=6  Identities=17%  Similarity=0.285  Sum_probs=2.7

Q ss_pred             HHhHHH
Q psy11659          9 SELCNI   14 (684)
Q Consensus         9 ~~~~~~   14 (684)
                      +++.+|
T Consensus        39 SSIldA   44 (908)
T COG0419          39 SSILDA   44 (908)
T ss_pred             HHHHHH
Confidence            444444

>KOG0963|consensus

Probab=87.29  E-value=59  Score=37.02  Aligned_cols=26  Identities=23%  Similarity=0.377  Sum_probs=17.8

Q ss_pred             HHHHHHHhHHhhhhhHHHHHHHHhhH
Q psy11659        602 ELKNLRKKNDDKDKMLDDLEKTLEKK  627 (684)
Q Consensus       602 ei~~Lr~ql~e~e~~i~~LE~~~~~~  627 (684)
                      .+..++.+..+..+-|..||..+.+.
T Consensus       412 ~~~el~~~~~~~ke~i~klE~dl~~~  437 (629)
T KOG0963|consen  412 KGEELEAKATEQKELIAKLEQDLLKV  437 (629)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhhHhhc
Confidence            35566666666667777888877765

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=87.09  E-value=45  Score=35.49  Aligned_cols=57  Identities=18%  Similarity=0.366  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        357 KSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLK  413 (684)
Q Consensus       357 r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~  413 (684)
                      +..+..++.++..+...+......+..++.+...+...++.+...+..+..++..++
T Consensus       208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~  264 (325)
T PF08317_consen  208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE  264 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555555555555555555555555544444444433

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=86.90  E-value=15  Score=38.97  Aligned_cols=21  Identities=29%  Similarity=0.278  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy11659        393 EKVTSLQREKEKLIVERDSLK  413 (684)
Q Consensus       393 ~~l~~le~e~e~l~~e~~~L~  413 (684)
                      ++...+....+.....++.|+
T Consensus       113 ~e~~sl~~q~~~~~~~L~~L~  133 (314)
T PF04111_consen  113 EERDSLKNQYEYASNQLDRLR  133 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP

Probab=86.70  E-value=7.6  Score=29.61  Aligned_cols=53  Identities=25%  Similarity=0.488  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy11659        262 IKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKV-EKYEGIIETYKK  317 (684)
Q Consensus       262 ~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~-~k~e~~le~~k~  317 (684)
                      .++.+|..++..|..+++.|.   ..+..++.++...+..+.+. .++.+....|++
T Consensus         3 akid~Ls~dVq~L~~kvdqLs---~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY~K   56 (56)
T PF04728_consen    3 AKIDQLSSDVQTLNSKVDQLS---SDVNALRADVQAAKEEAARANQRLDNIAQSYKK   56 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred             hhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccC
Confidence            356677777888888877666   67777778887777766655 466666666653

The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.

>KOG0979|consensus

Probab=86.65  E-value=82  Score=38.00  Aligned_cols=39  Identities=21%  Similarity=0.230  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy11659        365 KQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKE  403 (684)
Q Consensus       365 ~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e  403 (684)
                      ..+..+...+..........+..+.+.+..+.+++.++.
T Consensus       318 ~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~  356 (1072)
T KOG0979|consen  318 DEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQ  356 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            344555555555555555555555555555555555443

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=86.39  E-value=66  Score=36.64  Aligned_cols=13  Identities=38%  Similarity=0.580  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHH
Q psy11659        306 EKYEGIIETYKKK  318 (684)
Q Consensus       306 ~k~e~~le~~k~k  318 (684)
                      ...+.++..||.|
T Consensus       231 ~~~~~el~~Yk~k  243 (511)
T PF09787_consen  231 ESEEAELQQYKQK  243 (511)
T ss_pred             HHHHHHHHHHHHH
Confidence            4556667777755

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=86.16  E-value=18  Score=37.87  Aligned_cols=23  Identities=22%  Similarity=0.283  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        493 MKTLENRKANQRILELEAELKER  515 (684)
Q Consensus       493 ~Le~~~~~l~~~i~eLq~qle~l  515 (684)
                      .|-.++..+..+|..|+.++++.
T Consensus       223 Kl~~eke~L~~qv~klk~qLee~  245 (302)
T PF09738_consen  223 KLADEKEELLEQVRKLKLQLEER  245 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555556555543

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=86.16  E-value=81  Score=37.46  Aligned_cols=14  Identities=43%  Similarity=0.525  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHHH
Q psy11659        287 EARYLKDEVDILRE  300 (684)
Q Consensus       287 ~~~~L~deld~lr~  300 (684)
                      ++..++++.+.+++
T Consensus       580 ~L~~l~e~~~~l~~  593 (717)
T PF10168_consen  580 ELQELQEERKSLRE  593 (717)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33344444444444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=86.14  E-value=43  Score=34.22  Aligned_cols=34  Identities=24%  Similarity=0.392  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        388 NKKLQEKVTSLQREKEKLIVERDSLKETNEELKC  421 (684)
Q Consensus       388 ~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~  421 (684)
                      +..+...+.......+.+..++..|+..++.|.+
T Consensus       188 N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~  221 (258)
T PF15397_consen  188 NQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQA  221 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444445555555555543

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=85.98  E-value=67  Score=36.55  Aligned_cols=35  Identities=20%  Similarity=0.265  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        386 FENKKLQEKVTSLQREKEKLIVERDSLKETNEELK  420 (684)
Q Consensus       386 ~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~  420 (684)
                      .++..+..++..|+.++..-...++.|+.++..++
T Consensus       474 rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~  508 (652)
T COG2433         474 REIRARDRRIERLEKELEEKKKRVEELERKLAELR  508 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556666666666666666666666666665

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=85.68  E-value=39  Score=33.39  Aligned_cols=35  Identities=31%  Similarity=0.322  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        385 EFENKKLQEKVTSLQREKEKLIVERDSLKETNEEL  419 (684)
Q Consensus       385 e~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL  419 (684)
                      ...+++.+-++.+|+..++.-..+++.|-.-+++|
T Consensus       167 qa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL  201 (207)
T PF05010_consen  167 QASLKKEEMKVQSLEESLEQKTKENEELTKICDEL  201 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444433

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=85.32  E-value=85  Score=36.94  Aligned_cols=9  Identities=11%  Similarity=0.135  Sum_probs=3.6

Q ss_pred             HHHHHHHHH
Q psy11659        212 CLVEEKRRL  220 (684)
Q Consensus       212 ~l~~E~~~l  220 (684)
                      .|..++..+
T Consensus       186 ~L~~dl~~~  194 (650)
T TIGR03185       186 RLAGDLTNV  194 (650)
T ss_pred             HHHHHHHHH
Confidence            334444443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=85.18  E-value=64  Score=35.39  Aligned_cols=12  Identities=25%  Similarity=0.312  Sum_probs=6.0

Q ss_pred             HHHHHHhcCCCc
Q psy11659        121 LILGCAINCNRK  132 (684)
Q Consensus       121 lvl~~av~~~~~  132 (684)
                      |.--|.++.|+.
T Consensus       159 l~~E~vrq~prS  170 (527)
T PF15066_consen  159 LAHECVRQPPRS  170 (527)
T ss_pred             hchhhhhCCCCC
Confidence            444555555544

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=84.96  E-value=61  Score=34.99  Aligned_cols=20  Identities=25%  Similarity=0.595  Sum_probs=17.2

Q ss_pred             ChHHHHHHHHHHHHHHHHhh
Q psy11659        447 PITELRQKLVRLTHENNMLQ  466 (684)
Q Consensus       447 ~~~el~~~l~~Le~Enk~Lr  466 (684)
                      |+..++..+.+|+.|++.+-
T Consensus       329 Plv~IKqAl~kLk~EI~qMd  348 (359)
T PF10498_consen  329 PLVKIKQALTKLKQEIKQMD  348 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            56789999999999998875

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=84.96  E-value=42  Score=33.09  Aligned_cols=16  Identities=19%  Similarity=0.368  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy11659        287 EARYLKDEVDILRETA  302 (684)
Q Consensus       287 ~~~~L~deld~lr~~~  302 (684)
                      -++.|++++..++...
T Consensus        28 lIksLKeei~emkk~e   43 (201)
T PF13851_consen   28 LIKSLKEEIAEMKKKE   43 (201)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4666666666665533

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=84.92  E-value=38  Score=32.55  Aligned_cols=88  Identities=20%  Similarity=0.291  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        330 KQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVER  409 (684)
Q Consensus       330 ~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~  409 (684)
                      ..|+-.|..|...+.+=..++.++   +..+...-..+.....++.........+..++......+..+..+......++
T Consensus        45 eqLkien~~l~~kIeERn~eL~~L---k~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r  121 (177)
T PF13870_consen   45 EQLKIENQQLNEKIEERNKELLKL---KKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKER  121 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555544444444444   33333333334444444444445555555555556666666666666666666


Q ss_pred             HHHHHHHHHHH
Q psy11659        410 DSLKETNEELK  420 (684)
Q Consensus       410 ~~L~e~~~eL~  420 (684)
                      +.++..+..|.
T Consensus       122 ~k~~~~~~~l~  132 (177)
T PF13870_consen  122 DKLRKQNKKLR  132 (177)
T ss_pred             HHHHHHHHHHH
Confidence            66666666664

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=84.49  E-value=78  Score=35.80  Aligned_cols=31  Identities=19%  Similarity=0.246  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        391 LQEKVTSLQREKEKLIVERDSLKETNEELKC  421 (684)
Q Consensus       391 L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~  421 (684)
                      ...++..++.+.+..+...+.+-.+.++.+.
T Consensus       353 ~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~  383 (498)
T TIGR03007       353 VEAELTQLNRDYEVNKSNYEQLLTRRESAEV  383 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555556655543

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG1962|consensus

Probab=84.01  E-value=18  Score=35.81  Aligned_cols=33  Identities=27%  Similarity=0.395  Sum_probs=15.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        383 KSEFENKKLQEKVTSLQREKEKLIVERDSLKET  415 (684)
Q Consensus       383 ~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~  415 (684)
                      +.+.....++.+.+.+..+.+++..+...|++.
T Consensus       176 ~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~  208 (216)
T KOG1962|consen  176 KAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ  208 (216)
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            334444444455555555555555444444443

>TIGR00634 recN DNA repair protein RecN

Probab=83.32  E-value=94  Score=35.86  Aligned_cols=32  Identities=16%  Similarity=0.128  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11659        196 CMELDMQVSMLQEEKSCLVEEKRRLEERFQEN  227 (684)
Q Consensus       196 ~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~  227 (684)
                      +.++.+.+..+......+..+++.++-++.+.
T Consensus       170 ~~~~~~~L~~l~~~~~~~~~eld~L~~ql~EL  201 (563)
T TIGR00634       170 WLKARQQLKDRQQKEQELAQRLDFLQFQLEEL  201 (563)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444555554444443

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=83.10  E-value=88  Score=35.36  Aligned_cols=55  Identities=11%  Similarity=0.183  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11659        328 QVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRAD  382 (684)
Q Consensus       328 ~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~  382 (684)
                      ++..++.....+......++.++........++..+.+++.-.+..+.....+.+
T Consensus       325 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~e  379 (498)
T TIGR03007       325 EIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRE  379 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444555444444455555555555555555555444433

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0018|consensus

Probab=82.91  E-value=1.2e+02  Score=36.86  Aligned_cols=25  Identities=40%  Similarity=0.470  Sum_probs=20.6

Q ss_pred             cchhHHhhcCCHHHHHHHHHHHHHHH
Q psy11659        101 VDVHKIVENIDAKELARLMQLILGCA  126 (684)
Q Consensus       101 pd~~~ia~~~d~~el~~ll~lvl~~a  126 (684)
                      -||..||- -+|.|+..|+.-|-|..
T Consensus       132 GdVE~IA~-k~PkElt~LFEEISgSi  156 (1141)
T KOG0018|consen  132 GDVEKIAG-KNPKELTALFEEISGSI  156 (1141)
T ss_pred             ChHHHHhc-cCHHHHHHHHHHHhhhh
Confidence            58889997 48999999999877654

>KOG0962|consensus

Probab=82.76  E-value=1.4e+02  Score=37.41  Aligned_cols=23  Identities=35%  Similarity=0.521  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q psy11659        202 QVSMLQEEKSCLVEEKRRLEERF  224 (684)
Q Consensus       202 q~~~L~~e~~~l~~E~~~l~~~~  224 (684)
                      ++..|..++..+..++..++...
T Consensus       269 ~~~~l~~e~~~l~~~~~~l~~~i  291 (1294)
T KOG0962|consen  269 QVKLLDSEHKNLKKQISRLREKI  291 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhc
Confidence            44455555666666666555444

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain

Probab=82.69  E-value=47  Score=31.95  Aligned_cols=78  Identities=22%  Similarity=0.257  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q psy11659        263 KLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKA--EELVDLKKQVKQLESKNLSYI  340 (684)
Q Consensus       263 ~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kl--eel~~l~~~~~~Le~~~~~l~  340 (684)
                      +++..-.+|..|+.-+..|+.-..+.+.|.--+|.-|.+..++.+-...+-+|-...  +++..+..++.+|+.....+.
T Consensus        49 rlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~  128 (195)
T PF10226_consen   49 RLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELI  128 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444556666666666665555666666667777776666666555555554332  233444444444444433333

Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=82.37  E-value=25  Score=39.76  Aligned_cols=34  Identities=24%  Similarity=0.377  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        264 LEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRE  300 (684)
Q Consensus       264 ~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~  300 (684)
                      ++.++.++..|+..+.++.   +.+..|+++++.++.
T Consensus       431 ve~l~~e~~~L~~~~ee~k---~eie~L~~~l~~~~r  464 (652)
T COG2433         431 VERLEEENSELKRELEELK---REIEKLESELERFRR  464 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            3333344444443333333   334444444444443

>KOG2046|consensus

Probab=80.69  E-value=11  Score=36.48  Aligned_cols=41  Identities=22%  Similarity=0.483  Sum_probs=31.5

Q ss_pred             HHhHHHHHHHHhhc-CCCCC-CCCc-cccccHHHHHHHHHhhCC
Q psy11659          9 SELCNILLKWLQTF-TLVAP-HQSL-ADITDGVAMAQALHQIAP   49 (684)
Q Consensus         9 ~~~~~~l~~W~~tf-~~~~~-~~~~-~dL~dG~~l~~vl~~idp   49 (684)
                      .++..-|+.||... ....+ -.++ .-|-||++|..+++.+.|
T Consensus        24 ~~~~~el~~WI~~~~~~~~~~~~~f~~~LKDG~iLCkl~N~l~p   67 (193)
T KOG2046|consen   24 DELEKELREWIENVVLTELPARGDFQDLLKDGVILCKLINKLYP   67 (193)
T ss_pred             HHHHHHHHHHHHHhhccCCCcccCHHHHHcchHHHHHHHHHhCc
Confidence            56788999999983 33222 3454 457899999999999999

>KOG0804|consensus

Probab=80.06  E-value=98  Score=33.90  Aligned_cols=53  Identities=17%  Similarity=0.213  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        326 KKQVKQLESKNLSYIQQTLDLEEELKKNGN-WKSQVDMYKKQMSELYNQFNEET  378 (684)
Q Consensus       326 ~~~~~~Le~~~~~l~~~~~~LEeel~~~~~-~r~~le~~k~qi~~l~~~l~e~~  378 (684)
                      .++++.+++.+..+..........+++... .+..+..+..+|++|+.++.++.
T Consensus       395 ~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlm  448 (493)
T KOG0804|consen  395 QKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLM  448 (493)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            344444444444444333322222222221 24445555566667766666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	684
1wix_A	164	The Solution Structure Of Rsgi Ruh-026, Conserved D		2e-41

>pdb|1WIX|A Chain A, The Solution Structure Of Rsgi Ruh-026, Conserved Domain Of Hook1 Protein From Mouse Length = 164

Iteration: 1
 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/154 (51%), Positives = 106/154 (68%), Gaps = 1/154 (0%)
Query: 11  LCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWR 70
           LC+ L+ WLQTF   +P Q +  +T+GV MAQ LHQI   WFSE WL++IK D+G +NWR
Sbjct: 10  LCDSLIIWLQTFKTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVG-DNWR 68
Query: 71  LKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCN 130
           +K SNLKK+  GI  Y+ E+  Q + E    D+++I E  D  EL RL+QLILGCA+NC 
Sbjct: 69  IKASNLKKVLHGITSYYHEFLGQQISEELIPDLNQITECADPVELGRLLQLILGCAVNCE 128
Query: 131 RKQNYITKIMELEESVQQVIMQSIQELENLHGST 164
           +KQ +I  IM LEESVQ V+M +IQEL +  G +
Sbjct: 129 KKQEHIKNIMTLEESVQHVVMTAIQELMSKSGPS 162

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	684
1wix_A	164	HOOK homolog 1, RSGI RUH-026; structural genomics,	7e-45
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-18
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-17
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-04
3ghg_C	411	Fibrinogen gamma chain; triple-stranded coiled coi	4e-05
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	4e-04
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	4e-04

>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1 Length = 164

 Score =  157 bits (397), Expect = 7e-45
 Identities = 80/160 (50%), Positives = 106/160 (66%), Gaps = 1/160 (0%)

Query: 6   EDQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIG 65
                LC+ L+ WLQTF   +P Q +  +T+GV MAQ LHQI   WFSE WL++IK D+G
Sbjct: 5   SSGLPLCDSLIIWLQTFKTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVG 64

Query: 66  ANNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGC 125
            +NWR+K SNLKK+  GI  Y+ E+  Q + E    D+++I E  D  EL RL+QLILGC
Sbjct: 65  -DNWRIKASNLKKVLHGITSYYHEFLGQQISEELIPDLNQITECADPVELGRLLQLILGC 123

Query: 126 AINCNRKQNYITKIMELEESVQQVIMQSIQELENLHGSTH 165
           A+NC +KQ +I  IM LEESVQ V+M +IQEL +  G + 
Sbjct: 124 AVNCEKKQEHIKNIMTLEESVQHVVMTAIQELMSKSGPSS 163

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 87.6 bits (217), Expect = 6e-18
 Identities = 58/335 (17%), Positives = 126/335 (37%), Gaps = 20/335 (5%)

Query: 239  MRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEV--- 295
               ++   KE   KAE+   +   K     ++   L+ KL +  E   EA  ++  +   
Sbjct: 862  KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAK 921

Query: 296  -----DILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEEL 350
                 +IL E   ++E+ E   E  ++   E   +++Q+  LE +          L+ E 
Sbjct: 922  KQELEEILHEMEARIEEEE---ERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEK 978

Query: 351  KKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERD 410
                    ++   +  +  + +Q N+ TK     E     L   +   + + + L   ++
Sbjct: 979  VT---ADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN 1035

Query: 411  SLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQK 470
              +    EL+  +L++ + +          L  +    ++L +++  L  +   L+  Q 
Sbjct: 1036 KHESMISELEV-RLKKEEKSRQELEKIKRKLEGE---SSDLHEQIAELQAQIAELK-AQL 1090

Query: 471  DDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFEL 530
               E +L    A+L+D T Q      + R+    I +L+ +L E         + +  +L
Sbjct: 1091 AKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDL-ESEKAARNKAEKQKRDL 1149

Query: 531  QNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQK 565
              E++ LK ++    +    Q +L          K
Sbjct: 1150 SEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 84.9 bits (210), Expect = 4e-17
 Identities = 54/346 (15%), Positives = 139/346 (40%), Gaps = 17/346 (4%)

Query: 288  ARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLE 347
             R  ++      E     E+ +      K+  ++   L ++   L+ K  +  +   + E
Sbjct: 853  TRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAE 912

Query: 348  EELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIV 407
            E   +    K +    ++ + E+  +  EE +R+ + + E KK+Q+++  L+ + E+   
Sbjct: 913  EMRVRLAAKKQE---LEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969

Query: 408  ERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQM 467
             R  L+                 ++  + +++ + ED        +KL+     +    +
Sbjct: 970  ARQKLQLEKVTAD---------GKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNL 1020

Query: 468  NQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKI 527
             ++++    L  +  K + +  +++++  +  K+ Q   ELE ++K ++  +++ +  +I
Sbjct: 1021 AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQ---ELE-KIKRKLEGESSDLHEQI 1076

Query: 528  FELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAF 587
             ELQ +I  LK Q+  ++EE       +E           +I++ E       E   S  
Sbjct: 1077 AELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEK 1136

Query: 588  KLLDPTVQNVAALN-ELKNLRKKNDDKDKMLDDLEKTLEKKEQQEK 632
               +   +    L+ EL+ L+ + +D        ++      + + 
Sbjct: 1137 AARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 71.0 bits (174), Expect = 8e-13
 Identities = 51/308 (16%), Positives = 119/308 (38%), Gaps = 32/308 (10%)

Query: 113  KELARLMQLILGCAINCNRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLD 172
             E     +          +KQ     + E+E  +++   +  Q+L+          + L+
Sbjct: 903  AETELYAEAEEMRVRLAAKKQELEEILHEMEARIEE-EEERSQQLQAEKKKMQQQMLDLE 961

Query: 173  PQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPT 232
             Q++   A  Q +   +     +  +++  + +++++ + L +E++ LEER  +      
Sbjct: 962  EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSD-----L 1016

Query: 233  NKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLK 292
                +    +   L +   K ES   +  ++L+ + K  ++LE     LE   GE+  L 
Sbjct: 1017 TTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE---GESSDLH 1073

Query: 293  DEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKK 352
            +++  L+    +++          KK EEL     +                 LE+E  +
Sbjct: 1074 EQIAELQAQIAELK------AQLAKKEEELQAALAR-----------------LEDETSQ 1110

Query: 353  NGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSL 412
              N   ++   +  +S+L      E    +K+E + + L E++ +L+ E E  +    + 
Sbjct: 1111 KNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQ 1170

Query: 413  KETNEELK 420
            +E      
Sbjct: 1171 QELRGSDY 1178

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 64.9 bits (158), Expect = 7e-11
 Identities = 52/294 (17%), Positives = 119/294 (40%), Gaps = 34/294 (11%)

Query: 364  KKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREK----EKLIVERDSLKETNEEL 419
            +++M     +     +R  K+E E K+L++K T L  EK    EKL  E +   E  E  
Sbjct: 856  EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915

Query: 420  KCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNI 479
                 ++ +  E+               + E+  ++      +  LQ  +K  ++ ++  
Sbjct: 916  VRLAAKKQELEEI---------------LHEMEARIEEEEERSQQLQ-AEKKKMQQQMLD 959

Query: 480  VNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKE 539
            +  +L++     +   LE   A+ +I ++E ++   + +    +  +   L+  + +L  
Sbjct: 960  LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILI-MEDQNNKLTKERKLLEERVSDLTT 1018

Query: 540  QINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAA 599
             +  ++E+     KL  K +  I++ +  ++  EEK+R+ +EK     +           
Sbjct: 1019 NLAEEEEKAKNLTKLKNKHESMISELEVRLKK-EEKSRQELEKIKRKLE----------- 1066

Query: 600  LNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLIATAFYNLALQKQRQTADNR 653
              E  +L ++  +    + +L+  L KKE++ +       +   QK       R
Sbjct: 1067 -GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIR 1119

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 5/160 (3%)

Query: 138  KIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCM 197
            K   L +   +     I ELE            L+   + L  E   + +   ++  +  
Sbjct: 1026 KAKNLTKLKNKH-ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084

Query: 198  ELDMQVSMLQEEKSCL---VEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAE 254
            EL  Q++  +EE       +E++   +    +   E  +   S ++  +++ K    KAE
Sbjct: 1085 ELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH-ISDLQEDLESEKAARNKAE 1143

Query: 255  SARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDE 294
              + D   +LE    ++ED      + +E  G      D+
Sbjct: 1144 KQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.7 bits (98), Expect = 9e-04
 Identities = 29/207 (14%), Positives = 77/207 (37%), Gaps = 15/207 (7%)

Query: 132  KQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQ 191
            K     KI ++E+ +  +      +L             L   +     + + +   +++
Sbjct: 978  KVTADGKIKKMEDDILIME-DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK 1036

Query: 192  MAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENF--VEPTNKGNSSMRRQMDALKEE 249
                  EL++++   ++ +  L + KR+LE    +    +       + ++ Q+   +EE
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE 1096

Query: 250  LFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARY-----------LKDEVDIL 298
            L  A +  +D   +     K++ +LE  ++ L+E     +            L +E++ L
Sbjct: 1097 LQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEAL 1156

Query: 299  RET-AEKVEKYEGIIETYKKKAEELVD 324
            +    + ++      E      ++  D
Sbjct: 1157 KTELEDTLDTTATQQELRGSDYKDDDD 1183

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 79.1 bits (194), Expect = 2e-15
 Identities = 96/629 (15%), Positives = 196/629 (31%), Gaps = 170/629 (27%)

Query: 141 ELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCME-- 198
           ++++  + ++  S +E++++  S  +++         L     T++  +++M Q+ +E  
Sbjct: 37  DVQDMPKSIL--SKEEIDHIIMSKDAVS-----GTLRL---FWTLLSKQEEMVQKFVEEV 86

Query: 199 LDMQVSMLQEEKSCLVEEKRRLEERFQE------NFVEPTNKGNSSMRRQMDALKEELFK 252
           L +    L         +   +   + E      N  +   K N S  +    L++ L +
Sbjct: 87  LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146

Query: 253 ---------------------AESARDD----------YRIKLEIQSKQMEDLELKLNSL 281
                                 +               + + L+  +     LE+    L
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 282 EETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDL-----KKQVK--QLES 334
            +         D    ++     ++     +   K     L+ L      K      L  
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 335 KNL---SYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKL 391
           K L    + Q T  L             +D +   ++       +E K         K L
Sbjct: 267 KILLTTRFKQVTDFLSAATTT----HISLDHHSMTLTP------DEVK-----SLLLKYL 311

Query: 392 QEKVTSLQREKEK-------LIVERDSLKE---TNEELK---CCQLQQSKSAELNTLGEN 438
             +   L RE          +I E  S+++   T +  K   C +L     + LN L   
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAE--SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 439 L------DLS--EDSVPITELRQKLVRL----THENNMLQMNQ--------KDDIEGKLN 478
                   LS    S  I      L  +       + M+ +N+        K   E  ++
Sbjct: 370 EYRKMFDRLSVFPPSAHIPT--ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 479 IVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLK 538
           I       +  ++K+K       ++ I++     K              F+  + I    
Sbjct: 428 I-----PSIYLELKVKLENEYALHRSIVDHYNIPKT-------------FDSDDLIPPYL 469

Query: 539 EQ-----INHQQEEHLEQGKLIEKLQDSITQKDSEIQDY---EEKNRKYIEKANSAFKLL 590
           +Q     I H    HL+  +  E++            D+   E+K R      N++  +L
Sbjct: 470 DQYFYSHIGH----HLKNIEHPERM-TLFRMV---FLDFRFLEQKIRHDSTAWNASGSIL 521

Query: 591 DPTVQNVAALNELKNLRK---KNDDK-DKMLDDLEKTLEKKEQQEKLIATAFYNLALQKQ 646
           +        L +LK  +     ND K +++++ +   L K E  E LI + + +L L+  
Sbjct: 522 N-------TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE--ENLICSKYTDL-LRIA 571

Query: 647 RQTADNRLASITFSQQPQSFLTKQRQASR 675
               D  +           F    +Q  R
Sbjct: 572 LMAEDEAI-----------FEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.9 bits (170), Expect = 2e-12
 Identities = 62/410 (15%), Positives = 135/410 (32%), Gaps = 105/410 (25%)

Query: 300 ETAEKVEKYEGIIETYKKK------AEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKN 353
           ET E   +Y+ I+  ++         +++ D+ K +  L  + + +I  + D      + 
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEIDHIIMSKDAVSGTLR- 66

Query: 354 GNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLK 413
                       +  E+  +F EE  R +  +F    ++ +           I +RD L 
Sbjct: 67  -----LFWTLLSKQEEMVQKFVEEVLRIN-YKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 414 ETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENN-----MLQMN 468
             N+      + + +                  P  +LRQ L+ L    N     +L   
Sbjct: 121 NDNQVFAKYNVSRLQ------------------PYLKLRQALLELRPAKNVLIDGVLGS- 161

Query: 469 QKDDIEGKLNIVNAKLDDVTQQVKMK------TLENRKANQRILELEAELKERVTED--- 519
                 GK  +          Q KM        L+N  + + +LE+  +L  ++  +   
Sbjct: 162 ------GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 520 ----AAGMKVKIFELQNEIKNLKEQINHQQE----EHLEQGKLIEKLQDS----ITQKDS 567
               ++ +K++I  +Q E++ L +   ++       +++  K       S    +T +  
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275

Query: 568 EIQDY---EEKNRKYIEKANSAF----------KLLDPTVQN---------------VAA 599
           ++ D+          ++  +             K LD   Q+               +A 
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335

Query: 600 L-----NELKNLRKKNDDK-DKMLDDLEKTLEKKEQQEKLIATAFYNLAL 643
                     N +  N DK   +++     LE  E ++      F  L++
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK-----MFDRLSV 380

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.9 bits (148), Expect = 1e-09
 Identities = 37/228 (16%), Positives = 88/228 (38%), Gaps = 16/228 (7%)

Query: 183  QTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQ 242
              +I    +     +     +  +   + C      + E +  +              R 
Sbjct: 867  SIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLK-----------IEARS 915

Query: 243  MDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEET-AGEARYLKDEVDILRET 301
            ++  K+     E+     + K++ Q+K+ + L  K+N+LE T + E   L+ +V+ LR +
Sbjct: 916  VERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS 975

Query: 302  AEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEEL-KKNGNWKSQV 360
             E+ +             EE+  L+K++ Q +++  +  +     + E  +     K Q 
Sbjct: 976  EEEAKNAT---NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQN 1032

Query: 361  DMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVE 408
             + K +  EL  + +++ K   ++  +    + K   L    E+L  +
Sbjct: 1033 TLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 49/287 (17%), Positives = 106/287 (36%), Gaps = 33/287 (11%)

Query: 262  IKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEE 321
             ++ +  K+ + +     +L+        L+  +   +      E    II+ + +    
Sbjct: 826  QRMYVVRKRYQCMRDATIALQA------LLRGYLVRNKYQMMLREHKSIIIQKHVRGWLA 879

Query: 322  LVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRA 381
             V   + +K +      Y +     E +  K       V+ YKK    L N+  +  ++ 
Sbjct: 880  RVHYHRTLKAIVYLQCCYRRMMAKRELKKLKI--EARSVERYKKLHIGLENKIMQLQRKI 937

Query: 382  DKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDL 441
            D+   E K L EK+ +L+        E + L+   E L+  + +   +         L L
Sbjct: 938  DEQNKEYKSLLEKMNNLEITYST---ETEKLRSDVERLRMSEEEAKNATN-----RVLSL 989

Query: 442  SEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKA 501
             E+   I +LR++L +   E   ++    D  + +   + ++L +          +N   
Sbjct: 990  QEE---IAKLRKELHQTQTEKKTIE-EWADKYKHETEQLVSELKE----------QNTLL 1035

Query: 502  NQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEH 548
                 EL   + ++  E    M+ K   L  E K L+  +N ++  +
Sbjct: 1036 KTEKEELNRRIHDQAKEITETMEKK---LVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 43/268 (16%), Positives = 100/268 (37%), Gaps = 12/268 (4%)

Query: 205  MLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKA-ESARDDYRIK 263
            ++Q+ +   V  KR    R     ++   +G     +    L+E      +     +  +
Sbjct: 821  IIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLAR 880

Query: 264  LEIQSKQMEDLELKLNSLEETA-GEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEEL 322
            +         + L+       A  E + LK E   +    +     E  I   ++K +E 
Sbjct: 881  VHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQ 940

Query: 323  VD-LKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRA 381
                K  ++++ +  ++Y  +T  L  ++++    + +      ++  L  +  +  K  
Sbjct: 941  NKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKEL 1000

Query: 382  DKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDL 441
             +++ E K ++E     + E E+L+ E   LKE N  LK      ++  ELN    +   
Sbjct: 1001 HQTQTEKKTIEEWADKYKHETEQLVSE---LKEQNTLLK------TEKEELNRRIHDQAK 1051

Query: 442  SEDSVPITELRQKLVRLTHENNMLQMNQ 469
                    +L ++  +L  + N  ++  
Sbjct: 1052 EITETMEKKLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 39/252 (15%), Positives = 96/252 (38%), Gaps = 30/252 (11%)

Query: 383  KSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLS 442
            +++++    + K   +Q+     +      +     +      +   A+     E   L 
Sbjct: 855  RNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKR----ELKKLK 910

Query: 443  EDSVPITELRQKLVRLTHENNMLQMNQK-DDIEGKLNIVNAKLDDVTQQVKMKTLENRKA 501
             ++  +   ++  + L  EN ++Q+ +K D+   +   +  K++++      +T + R  
Sbjct: 911  IEARSVERYKKLHIGL--ENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSD 968

Query: 502  NQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDS 561
             +R+   E E K            ++  LQ EI  L+++++  Q E     +  +K +  
Sbjct: 969  VERLRMSEEEAKN--------ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020

Query: 562  ITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLE 621
              Q  SE+++     +   E+ N   ++ D               ++  +  +K L +  
Sbjct: 1021 TEQLVSELKEQNTLLKTEKEELNR--RIHD-------------QAKEITETMEKKLVEET 1065

Query: 622  KTLEKKEQQEKL 633
            K LE     E+L
Sbjct: 1066 KQLELDLNDERL 1077

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 21/173 (12%), Positives = 63/173 (36%), Gaps = 19/173 (10%)

Query: 181  ELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMR 240
             ++        +  + M+L  ++    +E   L+E+   LE  +                
Sbjct: 915  SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST------------ET 962

Query: 241  RQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRE 300
             ++ +  E L  +E    +   ++    +++  L  +L+  +    E + +++  D  + 
Sbjct: 963  EKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT---EKKTIEEWADKYKH 1019

Query: 301  T-AEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKK 352
               + V + +      K + EE   L +++     +    +++ L  E +  +
Sbjct: 1020 ETEQLVSELKEQNTLLKTEKEE---LNRRIHDQAKEITETMEKKLVEETKQLE 1069

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 24/142 (16%), Positives = 57/142 (40%), Gaps = 8/142 (5%)

Query: 138  KIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCM 197
            KIM+L+  + +   +  + L     +      +   ++++ V  L+   +       R +
Sbjct: 929  KIMQLQRKIDEQNKE-YKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVL 987

Query: 198  ELDMQVSMLQEEKSCLVEEKRRLEERFQ------ENFVEPTNKGNSSMRRQMDALKEELF 251
             L  +++ L++E      EK+ +EE         E  V    + N+ ++ + + L   + 
Sbjct: 988  SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIH 1047

Query: 252  KAES-ARDDYRIKLEIQSKQME 272
                   +    KL  ++KQ+E
Sbjct: 1048 DQAKEITETMEKKLVEETKQLE 1069

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 17/105 (16%), Positives = 37/105 (35%)

Query: 471 DDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFEL 530
             I   L+    K+D   Q ++    +       + +L   ++     D +     I   
Sbjct: 23  CGIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAA 82

Query: 531 QNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEK 575
             + + + E+I   +   L     I  LQ+     + +I + +EK
Sbjct: 83  TLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEK 127

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 48/322 (14%), Positives = 105/322 (32%), Gaps = 40/322 (12%)

Query: 143  EESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCMELDMQ 202
             E++ QV  +  + L+  +    +  + +          +      RD +    +   + 
Sbjct: 1815 PEALFQVGSEFTRNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVY--IH 1872

Query: 203  VSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRI 262
             ++ +     L  + R+       N+V P +     + + +  + E+  + E  +    I
Sbjct: 1873 QTIGEANIRLLKRQGRQ-------NYVTPRHY-LDFINQVVLLINEKRDQLEEEQLHLNI 1924

Query: 263  KLE------IQSKQM-EDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETY 315
             L+       Q K +   L  K   L+    +A     ++   ++ AE  +K        
Sbjct: 1925 GLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQK---DAREL 1981

Query: 316  KKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFN 375
            + + +         K     +L   + T  L EE++                 +L N  N
Sbjct: 1982 QVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVE-----------------QLENAAN 2024

Query: 376  EETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTL 435
            E   + D+       L++ + + + E   LI E + +K  +   K         A L+ L
Sbjct: 2025 ELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESS--KVKNKVDRSIALLDNL 2082

Query: 436  -GENLDLSEDSVPITELRQKLV 456
              E     + S         +V
Sbjct: 2083 NSERGRWEQQSENFNTQMSTVV 2104

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 20/181 (11%), Positives = 55/181 (30%), Gaps = 4/181 (2%)

Query: 453 QKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAEL 512
           + +         L++ +++       +   ++D     ++    E+ +A +  +EL+ + 
Sbjct: 819 EAIYNSLQT--KLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALR--IELKRQK 874

Query: 513 KERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDY 572
           K  V        +K  E     K++    N   +        ++ L+    +  S     
Sbjct: 875 KIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQS 934

Query: 573 EEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEK 632
                  + +         P +         +         +   + L   LE+ ++ E 
Sbjct: 935 NSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIED 994

Query: 633 L 633
           L
Sbjct: 995 L 995

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	684
1wix_A	164	HOOK homolog 1, RSGI RUH-026; structural genomics,	100.0
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.54
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.47
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.32
2ee7_A	127	Sperm flagellar protein 1; all alpha protein, CH d	97.24
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.22
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.12
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.85
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.74
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.58
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	96.39
2qjz_A	123	Microtubule-associated protein RP/EB family member	96.27
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.04
1wyo_A	159	Protein EB3, microtubule-associated protein RP/EB	96.02
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.64
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.54
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.49
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	95.01
2yrn_A	129	Neuron navigator 2 isoform 4; calponin homolgy dom	94.98
2vzc_A	131	Alpha-parvin; membrane, cytoplasm, cytoskeleton, c	94.51
2r8u_A	268	Microtubule-associated protein RP/EB family member	94.47
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	94.44
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	94.21
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	94.17
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	93.84
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	93.66
1wjo_A	124	T-plastin; CH domain, actin binding, structural ge	93.59
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	93.49
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	93.35
2qjx_A	127	Protein BIM1; calponin homology domain, protein bi	92.93
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	92.8
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	92.76
2d89_A	119	EHBP1 protein; all alpha, calponin homology domain	92.68
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	92.54
1wyl_A	116	NEDD9 interacting protein with calponin homology a	92.05
4abo_I	145	MAL3, microtubule integrity protein MAL3; structur	91.98
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	91.71
2d87_A	128	Smoothelin splice isoform L2; all alpha, calponin	91.53
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	91.46
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	91.42
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	91.21
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	91.18
1bkr_A	109	Spectrin beta chain; filamentous actin-binding dom	91.01
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	90.53
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	90.44
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	90.38
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	89.94
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	89.91
1bhd_A	118	Utrophin; calponin homology, actin binding, struct	89.77
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	89.55
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	89.29
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	89.08
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	88.96
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	88.89
1wyp_A	136	Calponin 1; CH domain, F-actin binding, all-alpha,	88.47
2d88_A	121	Protein mical-3; all alpha, calponin homology doma	88.46
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	88.4
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	87.94
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	87.87
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	87.26
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	87.13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	86.83
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	86.71
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	86.46
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	86.44
2l3g_A	126	RHO guanine nucleotide exchange factor 7; structur	86.4
1wyq_A	127	Spectrin beta chain, brain 2; NPPSFA, structural g	86.37
1h67_A	108	Calponin alpha; cytoskeleton, calponin homology do	86.25
1wyn_A	146	Calponin-2; CH domain, F-actin binding, all alpha	86.24
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	86.24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	86.05
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	85.85
1wyr_A	121	RHO guanine nucleotide exchange factor 6; CH domai	85.78
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	85.54
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	85.44
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	85.2
1p2x_A	159	RNG2 protein, RAS GTPase-activating-like protein;	85.11
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	85.08
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	85.02
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	84.76
1p5s_A	203	RAS GTPase-activating-like protein RNG2; alpha-hel	84.54
1wym_A	155	Transgelin-2; CH domain, F-actin binding, all heli	84.23
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	82.82
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	82.78
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	82.74
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	82.34
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	82.12
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	81.36
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	81.04
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	80.96
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	80.78

>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1

Probab=100.00  E-value=2.4e-47  Score=358.28  Aligned_cols=159  Identities=50%  Similarity=0.864  Sum_probs=154.3

Q ss_pred             CCCcChHHhHHHHHHHHhhcCCCCCCCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHH
Q psy11659          3 NTQEDQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEG   82 (684)
Q Consensus         3 ~~~~~~~~~~~~l~~W~~tf~~~~~~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~   82 (684)
                      .|++++.++++|||.|+|||++.+|+.+++||+||++|++||++|||+||+++||.+|+.++++ ||++|++||++|+++
T Consensus         2 ~~~~~~~~~~~aLl~W~~tf~~~~~~~~~~dL~DG~~L~~iL~~IDp~~F~~~~l~~i~~~~~~-nw~lr~~NLk~l~~~   80 (164)
T 1wix_A            2 SSGSSGLPLCDSLIIWLQTFKTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGD-NWRIKASNLKKVLHG   80 (164)
T ss_dssp             CCCCCSCHHHHHHHHHHTTCCCSSCCCSHHHHTTSHHHHHHHHHHCTTTSCHHHHTTCCSGGGG-CSHHHHHHHHHHHHH
T ss_pred             CcccchhHHHHHHHHHHHHcCCCCCcCcHHHhccHHHHHHHHHHhCccccCchHhhhhcccCcc-cHHHHHHHHHHHHHH
Confidence            5889999999999999999999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHHHhhcccccCccccchhHHhhcCCHHHHHHHHHHHHHHHhcCCCchhhhHHhHcCCHHHHHHHHHHHHHHhcccC
Q psy11659         83 IVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCNRKQNYITKIMELEESVQQVIMQSIQELENLHG  162 (684)
Q Consensus        83 i~~y~~~~l~~~~~~~~~pd~~~ia~~~d~~el~~ll~lvl~~av~~~~~~~~I~~I~~L~~~~Q~~lm~~Iq~~~~~~~  162 (684)
                      |.+||+++|++++..+++||+..||+++|+.|+.+|++|||||||+|++|++||++||+|++++|++||.+||++|+.++
T Consensus        81 i~~Yy~e~L~~~i~~~~~pd~~~Ia~~~d~~el~kLl~LiLg~AV~c~~ke~~I~~I~~L~~~~Q~~im~~Iqev~~~~~  160 (164)
T 1wix_A           81 ITSYYHEFLGQQISEELIPDLNQITECADPVELGRLLQLILGCAVNCEKKQEHIKNIMTLEESVQHVVMTAIQELMSKSG  160 (164)
T ss_dssp             HHHHHHTTTCCCCCTTTCCCHHHHHTTCCHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhcCcccccCCCCHHHHHhCCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHHHHHHcccC
Confidence            99999999999887789999999999999999999999999999999999999999999999999999999999998854

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.54  E-value=1.4e-07  Score=115.51  Aligned_cols=43  Identities=16%  Similarity=0.108  Sum_probs=24.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy11659        234 KGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLEL  276 (684)
Q Consensus       234 ~~~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~  276 (684)
                      +.+..++.++.+++..+..++..+.++..++..++.++..++.
T Consensus       857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~  899 (1184)
T 1i84_S          857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQE  899 (1184)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666667766666666555555555555555544444443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.47  E-value=2.3e-07  Score=113.58  Aligned_cols=22  Identities=18%  Similarity=0.271  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy11659        492 KMKTLENRKANQRILELEAELK  513 (684)
Q Consensus       492 ~~Le~~~~~l~~~i~eLq~qle  513 (684)
                      ..++.....+..++..+..+++
T Consensus      1112 ~~le~~l~~Le~eie~L~eeLe 1133 (1184)
T 1i84_S         1112 NNALKKIRELESHISDLQEDLE 1133 (1184)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444444433333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.32  E-value=0.093  Score=49.21  Aligned_cols=25  Identities=24%  Similarity=0.317  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        328 QVKQLESKNLSYIQQTLDLEEELKK  352 (684)
Q Consensus       328 ~~~~Le~~~~~l~~~~~~LEeel~~  352 (684)
                      .+..++.......++++.|+.++..
T Consensus       131 SleD~e~kln~aiEr~alLE~El~E  155 (189)
T 2v71_A          131 SLEDFEQRLNQAIERNAFLESELDE  155 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444445555555555555544

>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.24  E-value=0.00085  Score=59.29  Aligned_cols=90  Identities=21%  Similarity=0.298  Sum_probs=59.2

Q ss_pred             CcChHHhHHHHHHHHhhcCCCCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHH
Q psy11659          5 QEDQSELCNILLKWLQTFTLVAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGI   83 (684)
Q Consensus         5 ~~~~~~~~~~l~~W~~tf~~~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i   83 (684)
                      +++ .+....|+.||++++++.|..++ -|++||+.+++|++...|...+-.     .-+++. .-..|+.|...+-+  
T Consensus        11 ~l~-~ee~~el~~WL~~l~Ls~~~rn~rRDFSdG~lvAEIl~~y~Pk~Vdlh-----~y~~~~-S~~~K~~NW~~ln~--   81 (127)
T 2ee7_A           11 SVD-EEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMVEMH-----NYVPAN-SLQQKLSNWGHLNR--   81 (127)
T ss_dssp             SCC-HHHHHHHHHHHHHSCCSCCSSCHHHHHTTSHHHHHHHHHHCTTTCCCS-----SCCCCS-SHHHHHHHHHHHHH--
T ss_pred             CCC-HHHHHHHHHHHHcCCCCCCCCchhhhccchhHHHHHHHHHCcCccccc-----ccCCCC-cHHHHHHhHHHHHH--
Confidence            455 56677899999999999887754 789999999999999999754321     012333 55667777755542  


Q ss_pred             HHHHHHhhcccccCccccchhHHhh
Q psy11659         84 VDYFQEYFDQALGEFGKVDVHKIVE  108 (684)
Q Consensus        84 ~~y~~~~l~~~~~~~~~pd~~~ia~  108 (684)
                           .+|..-=..++..++..|+.
T Consensus        82 -----kvl~kl~~~l~~~~i~~i~~  101 (127)
T 2ee7_A           82 -----KVLKRLNFSVPDDVMRKIAQ  101 (127)
T ss_dssp             -----HTTGGGTCCCCHHHHHHHHT
T ss_pred             -----HHHHHcCCCCCHHHHHHHHh
Confidence                 23332111334456677775

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.22  E-value=0.041  Score=55.13  Aligned_cols=13  Identities=0%  Similarity=-0.133  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHHHH
Q psy11659        288 ARYLKDEVDILRE  300 (684)
Q Consensus       288 ~~~L~deld~lr~  300 (684)
                      +..++.+++.++.
T Consensus        62 ~~~~e~~i~~~~~   74 (256)
T 3na7_A           62 VSKNEQTLQDTNA   74 (256)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3333344444433

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.12  E-value=0.18  Score=47.25  Aligned_cols=13  Identities=15%  Similarity=0.146  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHHH
Q psy11659        268 SKQMEDLELKLNS  280 (684)
Q Consensus       268 e~el~~l~~k~~~  280 (684)
                      ++++..+..++..
T Consensus        48 E~eL~~~Ek~~~~   60 (189)
T 2v71_A           48 EAQLVQAEQRNRD   60 (189)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3334444444433

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.85  E-value=0.24  Score=45.28  Aligned_cols=44  Identities=20%  Similarity=0.294  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        363 YKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLI  406 (684)
Q Consensus       363 ~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~  406 (684)
                      +...+..|+..+.....+..++..+++.|.+++..+++++..+.
T Consensus        95 lq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e  138 (168)
T 3o0z_A           95 LQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33356666777777777777778888888888888888877766

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.74  E-value=0.25  Score=49.38  Aligned_cols=16  Identities=6%  Similarity=0.001  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy11659        328 QVKQLESKNLSYIQQT  343 (684)
Q Consensus       328 ~~~~Le~~~~~l~~~~  343 (684)
                      ++..+++....++..+
T Consensus       105 ~i~~lE~eile~~e~i  120 (256)
T 3na7_A          105 RSNQANREIENLQNEI  120 (256)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.58  E-value=0.43  Score=43.63  Aligned_cols=16  Identities=19%  Similarity=0.356  Sum_probs=6.7

Q ss_pred             chHHHHHHHHHHHHHH
Q psy11659        235 GNSSMRRQMDALKEEL  250 (684)
Q Consensus       235 ~~~~L~~qleel~e~l  250 (684)
                      ++..|+.|++++.+.+
T Consensus         7 Ki~~LekQL~E~n~kL   22 (168)
T 3o0z_A            7 KLSQLQKQLEEANDLL   22 (168)
T ss_dssp             ---CTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444555555555444

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=96.39  E-value=0.4  Score=43.36  Aligned_cols=134  Identities=16%  Similarity=0.208  Sum_probs=81.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy11659        483 KLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSI  562 (684)
Q Consensus       483 ~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~~~~~lk~kl~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L  562 (684)
                      .|-.+-.+...|+..+......+...+..+..++.     ++.++..+..++......+..|...+..........+...
T Consensus         7 KLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~-----~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~   81 (154)
T 2ocy_A            7 QLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQ-----LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEA   81 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH-----HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444455555555555555555554444321     1222222333333344444445555555557777788888


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhchhhHHHHHHHHHhHHhhhhhHHHHHHHHhh
Q psy11659        563 TQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEK  626 (684)
Q Consensus       563 ~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~~~~~ei~~Lr~ql~e~e~~i~~LE~~~~~  626 (684)
                      ..++.++.++...   .|++|+.+.-.-......  +......|+.++.+++..+..+...+..
T Consensus        82 ~~ie~ElEeLTas---LFeEAN~MVa~ar~~~~~--~e~r~~~L~~ql~e~~~~l~~lq~ql~~  140 (154)
T 2ocy_A           82 DKLNKEVEDLTAS---LFDEANNMVADARKEKYA--IEILNKRLTEQLREKDTLLDTLTLQLKN  140 (154)
T ss_dssp             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888766554   488888887665544433  5667788999999999999888877654

>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A

Probab=96.27  E-value=0.006  Score=53.51  Aligned_cols=94  Identities=19%  Similarity=0.280  Sum_probs=63.0

Q ss_pred             HHHHHHHhhcCCCCCCCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHHHhhc
Q psy11659         13 NILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYFD   92 (684)
Q Consensus        13 ~~l~~W~~tf~~~~~~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~~~l~   92 (684)
                      ..|+.|||+. +..+...+++|.||+++.++++-|-|...+   +.+|+-++.. . ---+.|++.+-..+..|     |
T Consensus         8 ~ElL~WIN~~-L~~~~~kiE~L~~Ga~yCqlmd~l~Pg~v~---l~KVkf~a~~-e-~e~~~N~k~lq~af~k~-----g   76 (123)
T 2qjz_A            8 HDMLAWINES-LQLNLTKIEQLCSGAAYCQFMDMLFPGSIA---LKKVKFQAKL-E-HEYIQNFKILQAGFKRM-----G   76 (123)
T ss_dssp             HHHHHHHHHH-HTCCCCCGGGGGGSHHHHHHHHHHSTTSSC---GGGCCTTCCS-H-HHHHHHHHHHHHHHHHH-----T
T ss_pred             HHHHHHHHHH-HCCCCchHHHcCchHHHHHHHHHHccCCCc---HHHhccCCCC-h-HHHHHHHHHHHHHHHHc-----C
Confidence            4589999987 466677889999999999999999998765   3466533222 1 23456777666654443     4


Q ss_pred             ccccCccccchhHHhhcCCHHHHHHHHHHH
Q psy11659         93 QALGEFGKVDVHKIVENIDAKELARLMQLI  122 (684)
Q Consensus        93 ~~~~~~~~pd~~~ia~~~d~~el~~ll~lv  122 (684)
                      .+    ..+|+..+.+ +...+-..+++.+
T Consensus        77 V~----k~i~v~kLvk-gk~qdnleflqW~  101 (123)
T 2qjz_A           77 VD----KIIPVDKLVK-GKFQDNFEFVQWF  101 (123)
T ss_dssp             CC----CCCCHHHHTT-CCHHHHHHHHHHH
T ss_pred             CC----CccCHHHHHc-CCchhHHHHHHHH
Confidence            22    2467788887 5555555555544

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.04  E-value=2.6  Score=55.86  Aligned_cols=43  Identities=7%  Similarity=0.128  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHH
Q psy11659        527 IFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEI  569 (684)
Q Consensus       527 l~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el  569 (684)
                      +......+++...-+..|..+..-|...+..+...+..+-.|.
T Consensus      2065 ~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~ 2107 (3245)
T 3vkg_A         2065 SSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDV 2107 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHHH
Confidence            3344455566666777777777777777777777777766664

>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.02  E-value=0.012  Score=53.79  Aligned_cols=107  Identities=17%  Similarity=0.193  Sum_probs=68.4

Q ss_pred             HHhHHHHHHHHhhcCCCCCCCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHH
Q psy11659          9 SELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQ   88 (684)
Q Consensus         9 ~~~~~~l~~W~~tf~~~~~~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~   88 (684)
                      ..--..|+.|||+. +......+++|.||+++.++++-|-|...+   |.+|+-++.. . ---+.|++.+-..+..|  
T Consensus        21 ~~sr~ElL~WIN~~-L~~~~~kiE~L~~GaayCQLmd~L~PgsV~---l~KVkf~a~~-e-~e~~~N~k~lQ~af~k~--   92 (159)
T 1wyo_A           21 NLSRHDMLAWVNDS-LHLNYTKIEQLCSGAAYCQFMDMLFPGCVH---LRKVKFQAKL-E-HEYIHNFKVLQAAFKKM--   92 (159)
T ss_dssp             CCCHHHHHHHHHHH-SCCCCSSGGGGGGCHHHHHHHHHHSTTSSC---TTSCCTTCCS-S-HHHHHHHHHHHHHHHHH--
T ss_pred             chhHHHHHHHHHHH-HCCCCchhhhcCccHHHHHHHHHHccCCCc---HhhhccCCCC-h-HHHHHHHHHHHHHHHHc--
Confidence            34567899999976 466677889999999999999999997765   3466533222 2 23456777666655444  


Q ss_pred             HhhcccccCccccchhHHhhcCCHHHHHHHHHHHH-HHHhcCCC
Q psy11659         89 EYFDQALGEFGKVDVHKIVENIDAKELARLMQLIL-GCAINCNR  131 (684)
Q Consensus        89 ~~l~~~~~~~~~pd~~~ia~~~d~~el~~ll~lvl-~~av~~~~  131 (684)
                         |.+    ..+|+..+.+ +...+-..+++.+- ++..+++.
T Consensus        93 ---gV~----k~ipV~kLvk-gk~qdNlEFlqWfk~f~d~n~~~  128 (159)
T 1wyo_A           93 ---GVD----KIIPVEKLVK-GKFQDNFEFIQWFKKFFDANYDG  128 (159)
T ss_dssp             ---TCC----CCCCHHHHTT-TCSHHHHHHHHHHHHHHHTTCCS
T ss_pred             ---CCC----CccCHHHHhc-CCchhHHHHHHHHHHHHHHcCCC
Confidence               322    2477888887 44444444444443 23344433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.64  E-value=4  Score=54.25  Aligned_cols=50  Identities=10%  Similarity=0.213  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        359 QVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVE  408 (684)
Q Consensus       359 ~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e  408 (684)
                      +.+.++.++...+.++..+..-+..|..|+.++.+.+..+......+...
T Consensus      2057 ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A         2057 ETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHH
Confidence            33444444555555555555555566666666666666666655555443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.54  E-value=0.23  Score=59.78  Aligned_cols=20  Identities=25%  Similarity=0.434  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy11659        393 EKVTSLQREKEKLIVERDSL  412 (684)
Q Consensus       393 ~~l~~le~e~e~l~~e~~~L  412 (684)
                      +++..|++++..|+.+.+.+
T Consensus      1023 ~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A         1023 QLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.49  E-value=0.46  Score=57.13  Aligned_cols=23  Identities=17%  Similarity=0.213  Sum_probs=13.8

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHH
Q psy11659        379 KRADKSEFENKKLQEKVTSLQRE  401 (684)
Q Consensus       379 ~~~~~le~e~~~L~~~l~~le~e  401 (684)
                      .++..++.++..|+..+++++..
T Consensus      1023 ~kv~~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A         1023 QLVSELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666666666666666643

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=95.01  E-value=1.4  Score=37.10  Aligned_cols=54  Identities=17%  Similarity=0.105  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        365 KQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEE  418 (684)
Q Consensus       365 ~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~e  418 (684)
                      ..+..|++++......++..+..+.....++....+.......+..+|..+|.-
T Consensus        44 ~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriql   97 (101)
T 3u1c_A           44 DDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQL   97 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444433344444444444444444444444444445555544443

>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.98  E-value=0.046  Score=48.60  Aligned_cols=95  Identities=19%  Similarity=0.218  Sum_probs=60.0

Q ss_pred             HHhHHHHHHHHhhc-C---CCCCCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHH
Q psy11659          9 SELCNILLKWLQTF-T---LVAPHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGI   83 (684)
Q Consensus         9 ~~~~~~l~~W~~tf-~---~~~~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i   83 (684)
                      ......+..|+|+. .   +..++.+ ++||.||++|..++..|.|...+     ++...+.  +-.-++.|+...++.+
T Consensus        17 ~~q~~~f~~WIN~~L~~~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~l~-----~~~~~p~--~~~~~~eNv~~aL~~~   89 (129)
T 2yrn_A           17 EDQKRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIE-----DINGCPK--NRSQMIENIDACLNFL   89 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCSCCSCHHHHSSSSHHHHHHHHHHTTCCCT-----TCCSSCC--STTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCCccchhHHHHcccHHHHHHHHHHHhcCCcc-----cccCCCC--cHHHHHHHHHHHHHHH
Confidence            34566899999984 3   2234666 48999999999999999998765     2333332  2234667888877766


Q ss_pred             HHHHHHhhcccccCccccchhHHhhcCCHHHHHHHH
Q psy11659         84 VDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLM  119 (684)
Q Consensus        84 ~~y~~~~l~~~~~~~~~pd~~~ia~~~d~~el~~ll  119 (684)
                      ..     .|.++..   +...-|.. +++.-+..|+
T Consensus        90 ~~-----~gv~~~~---i~~~DI~d-gn~~~iL~Ll  116 (129)
T 2yrn_A           90 AA-----KGINIQG---LSAEEIRN-GNLKAILGLF  116 (129)
T ss_dssp             HH-----HTCCCTT---CCHHHHHH-TCHHHHHHHH
T ss_pred             HH-----hCCcccC---CChhhhhc-CCHhHHHHHH
Confidence            54     3544322   23445554 5655444333

>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*

Probab=94.51  E-value=0.22  Score=44.26  Aligned_cols=94  Identities=17%  Similarity=0.154  Sum_probs=60.2

Q ss_pred             HHHHHHHHhhc--CCCCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHH
Q psy11659         12 CNILLKWLQTF--TLVAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQ   88 (684)
Q Consensus        12 ~~~l~~W~~tf--~~~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~   88 (684)
                      ..++..|+|+.  ..+.++.++ .||.||++|..++..|.|...+-   .++...|.  +..-++.|....+..+..   
T Consensus        24 ~ktft~WiN~~L~~~~~~v~dL~~Dl~DGv~L~~Lle~ls~~~~~~---~~~~~~p~--~r~~kieNv~~aL~~lk~---   95 (131)
T 2vzc_A           24 KKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPL---HSFFLTPD--SFEQKVLNVSFAFELMQD---   95 (131)
T ss_dssp             HHHHHHHHHHHHGGGTCCCCCTTTTTTTSHHHHHHHHHHTTCCCCT---TSSCSSCC--SHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHcCCcccCHHHHcccHHHHHHHHHHhcCCCCCH---HHhcCCCC--cHHHHHHHHHHHHHHHHH---
Confidence            56799999985  234578775 69999999999999999987652   22322332  345677788777764432   


Q ss_pred             HhhcccccCccccchhHHhhcCCHHHHHHHH
Q psy11659         89 EYFDQALGEFGKVDVHKIVENIDAKELARLM  119 (684)
Q Consensus        89 ~~l~~~~~~~~~pd~~~ia~~~d~~el~~ll  119 (684)
                        .|..+.   -+...-|.. +++.-+..|+
T Consensus        96 --~gi~l~---~I~~~DIvd-Gn~kliLgLi  120 (131)
T 2vzc_A           96 --GGLEKP---KPRPEDIVN-CDLKSTLRVL  120 (131)
T ss_dssp             --TTCCCC---SSCHHHHHT-TCHHHHHHHH
T ss_pred             --cCCCcC---CCCHHHhhC-CCHHhHHHHH
Confidence              454332   244455654 5665544333

>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A

Probab=94.47  E-value=0.075  Score=52.69  Aligned_cols=104  Identities=19%  Similarity=0.213  Sum_probs=63.1

Q ss_pred             HHHHHHHHhhcCCCCCCCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHHHhh
Q psy11659         12 CNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYF   91 (684)
Q Consensus        12 ~~~l~~W~~tf~~~~~~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~~~l   91 (684)
                      -..||.|||.. +...+..+++|++|++..++++-|-|...+-   .+++-.+..  -.-.++|+|.+        +..+
T Consensus        17 R~elL~WiN~~-L~~~~~kiEel~tGaayCQlmd~l~P~~i~l---~kVkf~a~~--e~e~i~N~k~L--------Q~~F   82 (268)
T 2r8u_A           17 RHDMLAWINES-LQLNLTKIEQLCSGAAYCQFMDMLFPGSIAL---KKVKFQAKL--EHEYIQNFKIL--------QAGF   82 (268)
T ss_dssp             HHHHHHHHHHH-HTCCCCCGGGGGGSHHHHHHHHHHSTTSSCG---GGCCTTCCS--HHHHHHHHHHH--------HHHH
T ss_pred             HHHHHHHHHHH-hcCCcchHHHcccchHHHHHHHHHccCCCch---hhccCCCCC--HHHHHHHHHHH--------HHHH
Confidence            35699999976 4567889999999999999999999977653   455333221  11234555332        3333


Q ss_pred             cccccCccccchhHHhhcCCHHHHHHHHHHH-HHHHhcCCC
Q psy11659         92 DQALGEFGKVDVHKIVENIDAKELARLMQLI-LGCAINCNR  131 (684)
Q Consensus        92 ~~~~~~~~~pd~~~ia~~~d~~el~~ll~lv-l~~av~~~~  131 (684)
                      .. ......++|..+.+ +...+=..+++++ -++..+++.
T Consensus        83 ~k-~~I~k~ipV~kLvk-gk~qDNlEFlqWfkkf~d~n~~~  121 (268)
T 2r8u_A           83 KR-MGVDKIIPVDKLVK-GKFQDNFEFVQWFKKFFDANYDG  121 (268)
T ss_dssp             HH-TTCCCCCCHHHHTT-TCHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HH-cCCCCccCHHHHhc-cCchhHHHHHHHHHHHHHHcCCC
Confidence            22 11123577888887 5555544555554 233344443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=94.44  E-value=1.8  Score=35.76  Aligned_cols=59  Identities=15%  Similarity=0.187  Sum_probs=50.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        448 ITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKE  514 (684)
Q Consensus       448 ~~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~  514 (684)
                      +..+++++.+|+.++....        .++..|...|.+....+...+..+..+..++.+|...+=+
T Consensus         7 ~e~lre~l~~le~~~~~~~--------~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe   65 (97)
T 2eqb_B            7 YNQLKEDYNTLKRELSDRD--------DEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD   65 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999988877        7888899999999999999999998888888888775433

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=94.21  E-value=2.2  Score=35.86  Aligned_cols=84  Identities=15%  Similarity=0.175  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        332 LESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDS  411 (684)
Q Consensus       332 Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~  411 (684)
                      |.........+...++.+++.+   ..........+..+++++......++..+........++...++.......+..+
T Consensus        14 lk~e~e~a~d~ae~~e~~~k~~---e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evas   90 (101)
T 3u59_A           14 LKLDKENAIDRAEQAEADKKQA---EDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVAS   90 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444444444433   2233333334444444444444444444444444444444444444445555555


Q ss_pred             HHHHHHH
Q psy11659        412 LKETNEE  418 (684)
Q Consensus       412 L~e~~~e  418 (684)
                      |..+|.-
T Consensus        91 LnRriql   97 (101)
T 3u59_A           91 LNRRIQL   97 (101)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555543

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=94.17  E-value=2.2  Score=35.86  Aligned_cols=95  Identities=8%  Similarity=0.118  Sum_probs=55.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHhH
Q psy11659        448 ITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKI  527 (684)
Q Consensus       448 ~~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~~~~~lk~kl  527 (684)
                      |.-++.++..|+.+.....        ++...++..+.++......++.++..+..++..+...++....        ++
T Consensus         4 MdaIKkKm~~lk~e~e~a~--------drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee--------~L   67 (101)
T 3u1c_A            4 MDAIKKKMQMLKLDKENAL--------DRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLE--------EL   67 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH
T ss_pred             hHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--------HH
Confidence            3556777777777766665        6666777777777777777777777766666666665555432        23


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy11659        528 FELQNEIKNLKEQINHQQEEHLEQGKLIEKL  558 (684)
Q Consensus       528 ~e~~~ele~~r~~l~~le~q~~~~~~~~~~l  558 (684)
                      .++...++.........+.....+.+++.-+
T Consensus        68 ~ea~~kLee~ek~~~~aE~ev~~L~Rriqll   98 (101)
T 3u1c_A           68 HKSEDSLLFAEENAAKAESEVASLNRRIQLV   98 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444433

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=93.84  E-value=3.7  Score=37.19  Aligned_cols=77  Identities=21%  Similarity=0.284  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11659        326 KKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKL  405 (684)
Q Consensus       326 ~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l  405 (684)
                      ..++..|+.........+..|+..-.++   -...+.|..+|..|..++.+...+..-.+.....|+..++.++.++...
T Consensus        41 E~k~~eLEeeL~~v~~nlKsLE~seeka---sqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~  117 (155)
T 2efr_A           41 EGKSAELEEELKTVTNNLKSLEAQAEKY---SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ  117 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccchhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556666666666666666666655555   5566777778888888888777777777777777777766666554443

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=93.66  E-value=2.9  Score=35.49  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        329 VKQLESKNLSYIQQTLDLEEELKK  352 (684)
Q Consensus       329 ~~~Le~~~~~l~~~~~~LEeel~~  352 (684)
                      +..++.+.....++.+-||.++..
T Consensus        79 LeD~E~k~n~aiErnalLE~El~E  102 (111)
T 2v66_B           79 LEDFEQRLNQAIERNAFLESELDE  102 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444445555555555543

>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A

Probab=93.59  E-value=0.065  Score=47.00  Aligned_cols=73  Identities=16%  Similarity=0.186  Sum_probs=50.4

Q ss_pred             HHHHHHHhhc----CCCCCCCCcc--ccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHH
Q psy11659         13 NILLKWLQTF----TLVAPHQSLA--DITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDY   86 (684)
Q Consensus        13 ~~l~~W~~tf----~~~~~~~~~~--dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y   86 (684)
                      ..|+.|+|.-    ....++.+|.  +++||++|..+|+.|.|...+-+.   +....  -+-.-+..|.+.++.-.   
T Consensus        10 ~~ll~W~N~kl~~~g~~~~I~~F~d~sl~dG~~~l~Ll~~i~P~~vd~~l---v~~~~--L~~~d~~~Na~~ais~A---   81 (124)
T 1wjo_A           10 DIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDL---VKSGN--LTEDDKHNNAKYAVSMA---   81 (124)
T ss_dssp             HHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTTT---SCCSS--CCHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHhcCCCcccCCCCcchhhhhHHHHHHHHHHCcCccCHHH---hcCCC--CCHHHHHHHHHHHHHHH---
Confidence            4699999975    2345688887  999999999999999999986532   11111  01244678888777644   


Q ss_pred             HHHhhcccc
Q psy11659         87 FQEYFDQAL   95 (684)
Q Consensus        87 ~~~~l~~~~   95 (684)
                        +.+|.++
T Consensus        82 --rklG~~~   88 (124)
T 1wjo_A           82 --RRIGARV   88 (124)
T ss_dssp             --HHTCCSC
T ss_pred             --HHcCCCc
Confidence              2478653

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=93.49  E-value=3.7  Score=36.09  Aligned_cols=27  Identities=30%  Similarity=0.304  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        394 KVTSLQREKEKLIVERDSLKETNEELK  420 (684)
Q Consensus       394 ~l~~le~e~e~l~~e~~~L~e~~~eL~  420 (684)
                      ....+...+..+..++..|+..+++++
T Consensus        98 ~~~~L~~~kkkle~e~~~Lk~~led~e  124 (129)
T 2fxo_A           98 MNAELTAKKRKLEDECSELKRDIDDLE  124 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444555555555443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=93.35  E-value=3  Score=34.96  Aligned_cols=93  Identities=12%  Similarity=0.195  Sum_probs=54.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHhH
Q psy11659        448 ITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKI  527 (684)
Q Consensus       448 ~~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~~~~~lk~kl  527 (684)
                      |.-++.++..|..+.....        ++...++..+.++......++.+...+..++..++..++....        ++
T Consensus         4 md~iKkKm~~lk~e~e~a~--------d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e--------~l   67 (101)
T 3u59_A            4 MEAIKKKMQMLKLDKENAI--------DRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSE--------SV   67 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH
T ss_pred             HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--------HH
Confidence            4556777777777766665        6666777777777777777777776666666666665554432        22


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy11659        528 FELQNEIKNLKEQINHQQEEHLEQGKLIE  556 (684)
Q Consensus       528 ~e~~~ele~~r~~l~~le~q~~~~~~~~~  556 (684)
                      ..+...++.........+.....+.++|.
T Consensus        68 ~~a~~kLe~~ek~~~~AE~evasLnRriq   96 (101)
T 3u59_A           68 KEAQEKLEQAEKKATDAEAEVASLNRRIQ   96 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444443

>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}

Probab=92.93  E-value=0.39  Score=42.12  Aligned_cols=94  Identities=19%  Similarity=0.236  Sum_probs=56.0

Q ss_pred             HHHHHHHHhhcCCCCCCCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHHHhh
Q psy11659         12 CNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYF   91 (684)
Q Consensus        12 ~~~l~~W~~tf~~~~~~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~~~l   91 (684)
                      -..||.|||.+ +......+++|.+|++..++++-|-|+ .   .+.+++-.+..  -.--+.|++.+=..    +. .+
T Consensus        12 R~elL~WiN~~-L~~n~~kiEel~tGaayCQl~d~l~g~-v---~l~kVkf~a~~--e~e~~~N~k~LQ~~----f~-k~   79 (127)
T 2qjx_A           12 RTELLTWLNGL-LNLNYKKIEECGTGAAYCQIMDSIYGD-L---PMNRVKFNATA--EYEFQTNYKILQSC----FS-RH   79 (127)
T ss_dssp             HHHHHHHHHHH-HTCCCCSGGGGGGSHHHHHHHHHHHCC-S---CGGGSCTTCCS--HHHHHHHHHHHHHH----HH-HT
T ss_pred             HHHHHHHHHHH-HcCCccHHHHccchHHHHHHHhhhccc-c---CccccCCCCCC--HHHHHHHHHHHHHH----HH-Hc
Confidence            35699999987 456678899999999999999999875 2   24455432221  12233555433221    11 12


Q ss_pred             cccccCccccchhHHhhcCCHHHHHHHHHHH
Q psy11659         92 DQALGEFGKVDVHKIVENIDAKELARLMQLI  122 (684)
Q Consensus        92 ~~~~~~~~~pd~~~ia~~~d~~el~~ll~lv  122 (684)
                      +.    ...+++..+.+ +...+-..+++.+
T Consensus        80 ~I----~k~ipV~kLvK-grfQDNlEFlQWf  105 (127)
T 2qjx_A           80 GI----EKTVYVDKLIR-CKFQDNLEFLQWL  105 (127)
T ss_dssp             TC----CCCCCHHHHTT-TCHHHHHHHHHHH
T ss_pred             CC----CCccCHHHHhc-cCchhHHHHHHHH
Confidence            32    13467788877 4444444444443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=92.80  E-value=4.7  Score=35.41  Aligned_cols=14  Identities=36%  Similarity=0.494  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHHHH
Q psy11659        287 EARYLKDEVDILRE  300 (684)
Q Consensus       287 ~~~~L~deld~lr~  300 (684)
                      ++..+..++..++.
T Consensus        14 E~~~~~eel~~lke   27 (129)
T 2fxo_A           14 EMASMKEEFTRLKE   27 (129)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33344444444433

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=92.76  E-value=0.28  Score=43.13  Aligned_cols=77  Identities=19%  Similarity=0.220  Sum_probs=46.5

Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhchhhHHHHHHHHHhHHhhhhhHHHHHHH
Q psy11659        544 QQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKT  623 (684)
Q Consensus       544 le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~~~~~ei~~Lr~ql~e~e~~i~~LE~~  623 (684)
                      |...+..........+.....++.++..+...   .|++|+.+.-.-......  +......|+.++.+++..+..+...
T Consensus        51 L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTas---LFeEAN~MVa~ar~~~~~--~e~r~~~L~~ql~e~e~ll~~lq~Q  125 (135)
T 2e7s_A           51 LREDIAKENELRTKAEEEADKLNKEVEDLTAS---LFDEANNLVADARMEKYA--IEILNKRLTEQLREKDMLLDTLTLQ  125 (135)
T ss_dssp             HHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHH---HHHHHHHHHHHTTHHHHH--HHHHHHHHHHTTTHHHHCC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333456666677777777777755543   488888887666554443  5666788999999999888877665


Q ss_pred             Hh
Q psy11659        624 LE  625 (684)
Q Consensus       624 ~~  625 (684)
                      +.
T Consensus       126 L~  127 (135)
T 2e7s_A          126 LK  127 (135)
T ss_dssp             --
T ss_pred             HH
Confidence            43

>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.68  E-value=0.8  Score=39.82  Aligned_cols=85  Identities=19%  Similarity=0.246  Sum_probs=53.4

Q ss_pred             HHHHHHHHhhcCC---CCCCCCcc-ccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHH
Q psy11659         12 CNILLKWLQTFTL---VAPHQSLA-DITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYF   87 (684)
Q Consensus        12 ~~~l~~W~~tf~~---~~~~~~~~-dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~   87 (684)
                      -.+|+.|+|.---   ..++.++. +..||.+|.-++|.+.|+.++-.-+     .+.+     ...|++..+..    -
T Consensus        11 ~~~LL~W~~~~~~~y~~v~v~nFs~sw~dG~af~aLi~~~~P~lid~~~l-----~~~~-----~~~n~~~af~~----a   76 (119)
T 2d89_A           11 SQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSL-----NPQD-----IKENNKKAYDG----F   76 (119)
T ss_dssp             HHHHHHHHHHHTTTCSSCCCCCSSHHHHTTHHHHHHHHHHCTTTSCGGGC-----CTTC-----SHHHHHHHHHH----H
T ss_pred             HHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCChhhh-----cccC-----HHHHHHHHHHH----H
Confidence            5689999996421   23455553 5779999999999999999864322     1222     45788777763    1


Q ss_pred             HHhhcccccCccccchhHHhh--cCCHHHH
Q psy11659         88 QEYFDQALGEFGKVDVHKIVE--NIDAKEL  115 (684)
Q Consensus        88 ~~~l~~~~~~~~~pd~~~ia~--~~d~~el  115 (684)
                       +.||.+.    +.|+.-|..  .||...+
T Consensus        77 -~~LGi~~----ll~peDi~~~~~pD~ksv  101 (119)
T 2d89_A           77 -ASIGISR----LLEPSDMVLLAIPDKLTV  101 (119)
T ss_dssp             -HHHTCCC----CSCHHHHHHSSSCCHHHH
T ss_pred             -HHhCCCc----ccCHHHHhccCCCcHHHH
Confidence             4578642    344554542  3555443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=92.54  E-value=3.2  Score=34.24  Aligned_cols=62  Identities=16%  Similarity=0.160  Sum_probs=34.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhchhhHHHHHHHHHhHHhhh
Q psy11659        548 HLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKD  614 (684)
Q Consensus       548 ~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~~~~~ei~~Lr~ql~e~e  614 (684)
                      +..........+.....++.++..+...   .|++|+.+.-.-......  +......|+.||.+++
T Consensus        35 l~eE~~~R~~aE~~~~~ie~ElEeLTas---LFeEAN~MVa~ar~e~~~--~e~kn~~L~~qL~d~d   96 (97)
T 2eqb_B           35 IAKENELRTKAEEEADKLNKEVEDLTAS---LFDEANNMVADARKEKYA--IEILNKRLTEQLREKD   96 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcc
Confidence            3333455555666666666666654443   367777665554443332  4445666777776654

>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A

Probab=92.05  E-value=1.2  Score=38.47  Aligned_cols=83  Identities=17%  Similarity=0.141  Sum_probs=52.1

Q ss_pred             HHHHHHHHhhcC---CCCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHH
Q psy11659         12 CNILLKWLQTFT---LVAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYF   87 (684)
Q Consensus        12 ~~~l~~W~~tf~---~~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~   87 (684)
                      -.+|+.|+|.--   ...++.++ .+..||.+|.-++|.+.|+.++-.-|.     ..     -...|++..+.    .-
T Consensus         9 ~~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l~-----~~-----~~~~n~~~af~----~A   74 (116)
T 1wyl_A            9 QEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQ-----GL-----GALEATAWALK----VA   74 (116)
T ss_dssp             HHHHHHHHHHHHHHSTTCCCSCTTTTTTSSHHHHHHHHHHCTTSCCCSSGG-----GC-----CHHHHHHHHHH----HH
T ss_pred             HHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCCCCHHHhc-----cC-----CHHHHHHHHHH----HH
Confidence            578999999641   13346665 368999999999999999998742221     11     23456665554    33


Q ss_pred             HHhhcccccCccccchhHHhhcCCH
Q psy11659         88 QEYFDQALGEFGKVDVHKIVENIDA  112 (684)
Q Consensus        88 ~~~l~~~~~~~~~pd~~~ia~~~d~  112 (684)
                      ...+|.+.    +.|+.-|...+|+
T Consensus        75 e~~lgi~~----lL~peD~~~~~d~   95 (116)
T 1wyl_A           75 ENELGITP----VVSAQAVVAGSDP   95 (116)
T ss_dssp             HHTTCCCC----CSCHHHHHHTSCH
T ss_pred             HHHcCCcc----ccCHHHHhcCCch
Confidence            34578642    3455555543454

>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}

Probab=91.98  E-value=0.48  Score=42.27  Aligned_cols=102  Identities=18%  Similarity=0.153  Sum_probs=60.8

Q ss_pred             HHHHHHHhhcCCCCCCCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHHHhhc
Q psy11659         13 NILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYFD   92 (684)
Q Consensus        13 ~~l~~W~~tf~~~~~~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~~~l~   92 (684)
                      ..||.|||.+ +......+++|++|++..++++-|-|+ .   .|.+++=++..  -.--++|+|.+=..    |. .++
T Consensus         9 ~eLL~WiN~~-L~~n~tkIE~l~sGAaYCQlmD~lfg~-i---~l~kVkf~a~~--e~e~i~NfKlLQ~~----F~-k~~   76 (145)
T 4abo_I            9 QELLAWINQV-TSLGLTRIEDCGKGYAMIQIFDSIYQD-I---PLKKVNFECNN--EYQYINNWKVLQQV----FL-KKG   76 (145)
T ss_dssp             HHHHHHHHHH-HTCCCCSGGGGGGSHHHHHHHHHHHCC-S---CTTTSCSSCCS--HHHHHHHHHHHHHH----HH-HHT
T ss_pred             HHHHHHHHHH-cCCCcchHHHccccHHHHHHHHHHhcC-c---chhhcccCCCC--HHHHHHHHHHHHHH----HH-HcC
Confidence            4699999986 455688999999999999999999854 2   24555433322  12245566443322    21 123


Q ss_pred             ccccCccccchhHHhhcCCHHHHHHHHHHHHH-HHhcCCC
Q psy11659         93 QALGEFGKVDVHKIVENIDAKELARLMQLILG-CAINCNR  131 (684)
Q Consensus        93 ~~~~~~~~pd~~~ia~~~d~~el~~ll~lvl~-~av~~~~  131 (684)
                      .    ...+||..+++ +...+=..+++.+-. +-.+++.
T Consensus        77 I----~k~ipV~kLvK-gk~QDNlEFlQWfkkf~d~n~~~  111 (145)
T 4abo_I           77 I----DKVVDPERLSR-CKMQDNLEFVQWAKRFWDQYYPG  111 (145)
T ss_dssp             C----CCCCCHHHHTT-TCHHHHHHHHHHHHHHHHHHCCS
T ss_pred             C----CCccCHHHHhc-cchHhHHHHHHHHHHHHHhcCCC
Confidence            2    23477888887 555554444544432 2245544

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A

Probab=91.71  E-value=0.67  Score=45.82  Aligned_cols=90  Identities=14%  Similarity=0.150  Sum_probs=56.2

Q ss_pred             HHHHHHHHhhc-C-C-CCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHH
Q psy11659         12 CNILLKWLQTF-T-L-VAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYF   87 (684)
Q Consensus        12 ~~~l~~W~~tf-~-~-~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~   87 (684)
                      ..+|+.|+|.- . . ..++.++ .++.||.+|..++|.+.|..++-..+.     +.+     ...|++..+..    -
T Consensus       135 ~~~LL~W~~~~~~~~~~~~v~nF~~s~~DG~a~~aLi~~~~P~~i~~~~l~-----~~~-----~~~n~~~a~~~----a  200 (245)
T 1sh5_A          135 KEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVY-----RQT-----NLENLDQAFSV----A  200 (245)
T ss_dssp             HHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHTTCTTTCCHHHHH-----HSC-----HHHHHHHHHHH----H
T ss_pred             HHHHHHHHHHHhccCCCcccCCccccccchHHHHHHHHHHCCCCCCHHHcc-----cCC-----HHHHHHHHHHH----H
Confidence            46899999853 2 1 3456665 569999999999999999998854332     222     34677665543    3


Q ss_pred             HHhhcccccCccccchhHHhh-cCCHHHHHHHH
Q psy11659         88 QEYFDQALGEFGKVDVHKIVE-NIDAKELARLM  119 (684)
Q Consensus        88 ~~~l~~~~~~~~~pd~~~ia~-~~d~~el~~ll  119 (684)
                      .+.+|.+.    +.++.-|.. .||..-+...+
T Consensus       201 ~~~lGi~~----~l~peDi~~~~pd~k~i~tyv  229 (245)
T 1sh5_A          201 ERDLGVTR----LLDPEDVDVPQPDEKSIITYV  229 (245)
T ss_dssp             HHHHCCCC----CCCHHHHSSSSCCHHHHHHHH
T ss_pred             HHhCCCCc----cCCHHHhccCCCcHHHHHHHH
Confidence            34468652    244444543 45655444333

>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A

Probab=91.53  E-value=1.2  Score=39.35  Aligned_cols=87  Identities=22%  Similarity=0.260  Sum_probs=53.4

Q ss_pred             hHHHHHHHHhhcCC---CCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHH
Q psy11659         11 LCNILLKWLQTFTL---VAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDY   86 (684)
Q Consensus        11 ~~~~l~~W~~tf~~---~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y   86 (684)
                      --.+|+.|+|.---   ..++.+| .+..||.+|.-++|.+.|+.++-.-|     ++.+     ...|++..+..    
T Consensus         8 ~k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~af~aLih~~~P~lid~~~l-----~~~~-----~~~n~~~af~~----   73 (128)
T 2d87_A            8 IKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQL-----SPQN-----RRQNFEVAFSS----   73 (128)
T ss_dssp             HHHHHHHHHHHHSSSCTTCCCSCTTTTTTSSHHHHHHHHHHCTTTSCSTTS-----CSSC-----HHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCCHHHc-----CccC-----HHHHHHHHHHH----
Confidence            35789999996421   3346665 46799999999999999999864322     1222     34676665553    


Q ss_pred             HHHhhcccccCccccchhHHh--hcCCHHHH
Q psy11659         87 FQEYFDQALGEFGKVDVHKIV--ENIDAKEL  115 (684)
Q Consensus        87 ~~~~l~~~~~~~~~pd~~~ia--~~~d~~el  115 (684)
                      -...+|.+    .+.|+.-|+  ..||...+
T Consensus        74 Ae~~lgip----~lL~peD~v~~~~pD~ksv  100 (128)
T 2d87_A           74 AETHADCP----QLLDTEDMVRLREPDWKCV  100 (128)
T ss_dssp             HHHHHCCC----CCSCHHHHHHSSSCCHHHH
T ss_pred             HHHcCCCC----cccCHHHHhccCCccHHHH
Confidence            33446754    234555553  23555443

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A

Probab=91.46  E-value=0.75  Score=45.46  Aligned_cols=92  Identities=16%  Similarity=0.351  Sum_probs=57.3

Q ss_pred             HHHHHHHHhhcCCCCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHHHh
Q psy11659         12 CNILLKWLQTFTLVAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEY   90 (684)
Q Consensus        12 ~~~l~~W~~tf~~~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~~~   90 (684)
                      -.+|+.|+|.--...++.+| .++.||.+|..++|.+.|..+++ | ..+  ++.+     ...|++..+.    .-.+.
T Consensus       145 ~~~LL~W~~~~~~~~~v~nFs~s~~dG~a~~aLi~~~~P~~i~~-~-~~l--~~~~-----~~~n~~~a~~----~A~~~  211 (245)
T 2wa7_A          145 KQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPD-W-ESW--DPQK-----PVDNAREAVQ----QADDW  211 (245)
T ss_dssp             HHHHHHHHHHHSTTSCCCCSSGGGTTSHHHHHHHHHHSTTSSTT-G-GGS--CTTC-----HHHHHHHHHH----HHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCCCcccchhhHHHHHHHHHHCcccccc-c-ccc--Cccc-----HHHHHHHHHH----HHHHh
Confidence            47899999974224567777 47999999999999999998742 1 111  1222     4567766554    33445


Q ss_pred             hcccccCccccchhHHhh-cCCHHHHHHHHH
Q psy11659         91 FDQALGEFGKVDVHKIVE-NIDAKELARLMQ  120 (684)
Q Consensus        91 l~~~~~~~~~pd~~~ia~-~~d~~el~~ll~  120 (684)
                      +|.+.    +.++.-|+. +||..-+...+.
T Consensus       212 lGi~~----~l~peDi~~~~~d~ksi~tyvs  238 (245)
T 2wa7_A          212 LGVPQ----VITPEEIIHPDVDEHSVMTYLS  238 (245)
T ss_dssp             SCCCC----SSCHHHHTCTTCCHHHHHHHHT
T ss_pred             CCCCc----cCCHHHhccCCCcHHHHHHHHH
Confidence            78652    344455554 356554444443

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=91.42  E-value=2.5  Score=34.31  Aligned_cols=61  Identities=20%  Similarity=0.223  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        360 VDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK  420 (684)
Q Consensus       360 le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~  420 (684)
                      ++..+..+.+.+.++.+........|.++..++..++++.-.+..|..++++|.+.+.-|+
T Consensus        23 ~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk   83 (86)
T 3swk_A           23 RDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK   83 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334444556777777777788888999999999999999888888888888888877654

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1

Probab=91.21  E-value=0.62  Score=46.93  Aligned_cols=89  Identities=19%  Similarity=0.124  Sum_probs=51.7

Q ss_pred             HHHHHHHHhhc-C-CCCC-CCCcc-ccccHHHHHHHHHhhCCCcCChhHhh-hhccccCCcchhhhhhcHHHHHHHHHHH
Q psy11659         12 CNILLKWLQTF-T-LVAP-HQSLA-DITDGVAMAQALHQIAPEWFSEMWLA-KIKTDIGANNWRLKISNLKKINEGIVDY   86 (684)
Q Consensus        12 ~~~l~~W~~tf-~-~~~~-~~~~~-dL~dG~~l~~vl~~idp~~f~~~~l~-~i~~~~~~~nw~l~~~Nl~~i~~~i~~y   86 (684)
                      ..+|+.|+|.- . .+.+ +.+|. ++.||++|..++|.+.|.+.+..... -+.-++-  +..-...|++.++...   
T Consensus       170 ~~~LL~W~n~~l~~~g~~~I~nF~~s~~DG~a~~aLi~~~~P~~~~~~~~~l~~~~~~~--~~~~~~~n~~~a~~~A---  244 (275)
T 1aoa_A          170 EELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGF--NETDDLKRAESMLQQA---  244 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCSCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTT--TCSSHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHhcCCCcchhhhhhhhhhHHHHHHHHHHCCCccccccccccccccCC--CccCHHHHHHHHHHHH---
Confidence            46799999862 2 2222 78875 59999999999999999843210000 0000100  1122456777766533   


Q ss_pred             HHHhhcccccCccccchhHHhhcCCH
Q psy11659         87 FQEYFDQALGEFGKVDVHKIVENIDA  112 (684)
Q Consensus        87 ~~~~l~~~~~~~~~pd~~~ia~~~d~  112 (684)
                        +.+|.+.    +.++.-|+. +|+
T Consensus       245 --~~lGi~~----~l~peDi~~-~~~  263 (275)
T 1aoa_A          245 --DKLGCRQ----FVTPADVVS-GNP  263 (275)
T ss_dssp             --TTTTCCC----SCCHHHHHT-TCH
T ss_pred             --HHcCCCC----cCCHHHcCC-CCh
Confidence              3477642    456666764 676

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=91.18  E-value=8.4  Score=34.84  Aligned_cols=8  Identities=25%  Similarity=0.464  Sum_probs=3.1

Q ss_pred             HHHHHHHH
Q psy11659        288 ARYLKDEV  295 (684)
Q Consensus       288 ~~~L~del  295 (684)
                      +..|..++
T Consensus        44 ~~eLEeeL   51 (155)
T 2efr_A           44 SAELEEEL   51 (155)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A

Probab=91.01  E-value=1.8  Score=36.93  Aligned_cols=69  Identities=19%  Similarity=0.198  Sum_probs=45.0

Q ss_pred             HHHHHHHHhhcC--C-CCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHH
Q psy11659         12 CNILLKWLQTFT--L-VAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYF   87 (684)
Q Consensus        12 ~~~l~~W~~tf~--~-~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~   87 (684)
                      -++|+.|+|.--  . ..++.++ .+..||.+|.-++|.+.|+.++-.-|     ++.+     ...|++..+..    -
T Consensus         5 k~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l-----~~~~-----~~~n~~~af~~----A   70 (109)
T 1bkr_A            5 KDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKL-----KKSN-----AHYNLQNAFNL----A   70 (109)
T ss_dssp             HHHHHHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCCGGGC-----CTTC-----HHHHHHHHHHH----H
T ss_pred             HHHHHHHHHHHHccCCCCCCCCCcccccccHHHHHHHHHHCcCCCCHHHc-----CcCC-----HHHHHHHHHHH----H
Confidence            468999999542  1 2345555 56799999999999999998864322     1122     34666665543    3


Q ss_pred             HHhhccc
Q psy11659         88 QEYFDQA   94 (684)
Q Consensus        88 ~~~l~~~   94 (684)
                      .+.+|.+
T Consensus        71 e~~lgi~   77 (109)
T 1bkr_A           71 EQHLGLT   77 (109)
T ss_dssp             HHHHCCC
T ss_pred             HHHcCCC
Confidence            3457864

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A

Probab=90.53  E-value=0.84  Score=45.80  Aligned_cols=102  Identities=18%  Similarity=0.234  Sum_probs=65.5

Q ss_pred             HHHHHHHhhc--CCCCCCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHHH
Q psy11659         13 NILLKWLQTF--TLVAPHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQE   89 (684)
Q Consensus        13 ~~l~~W~~tf--~~~~~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~~   89 (684)
                      .++..|||+.  ....++.+ ++||.||++|..++..|-|....    .++...+.  +-.-++.|+...+..+..    
T Consensus        50 ktft~WiN~~L~~~~~~V~dL~~DL~DGv~L~~Lle~Ls~~~l~----~~~~~~p~--~r~~kleNv~~aL~~lk~----  119 (272)
T 3hoc_A           50 NTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMH----RKHNQRPT--FRQMQLENVSVALEFLDR----  119 (272)
T ss_dssp             HHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTSCCS----SCCCSSCC--SHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHhccCCCCcccHHHHHhhHHHHHHHHHHHcCCccc----cccCCCCc--cHHHHHHHHHHHHHHHHH----
Confidence            4799999996  44555666 58999999999999999987651    23332332  233577888888775542    


Q ss_pred             hhcccccCccccchhHHhhcCCHHHH-HHHHHHHHHHHhcC
Q psy11659         90 YFDQALGEFGKVDVHKIVENIDAKEL-ARLMQLILGCAINC  129 (684)
Q Consensus        90 ~l~~~~~~~~~pd~~~ia~~~d~~el-~~ll~lvl~~av~~  129 (684)
                       .|..+..   +...-|.. +++.-+ +-+..|++...+..
T Consensus       120 -~gv~lvn---I~~~DIvd-Gn~kliLgLlW~Li~~~~i~~  155 (272)
T 3hoc_A          120 -ESIKLVS---IDSKAIVD-GNLKLILGLIWTLILHYSISM  155 (272)
T ss_dssp             -TTCCCSS---CCHHHHHT-TCHHHHHHHHHHHHHHHHTTC
T ss_pred             -cCCcccc---cccchhhc-CCHHHHHHHHHHHHHHHhhhh
Confidence             4544322   33444554 565544 44556777776654

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=90.44  E-value=31  Score=40.19  Aligned_cols=90  Identities=22%  Similarity=0.291  Sum_probs=54.7

Q ss_pred             HHHHHHHHhhc-C-C-CCCCCCcc-ccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHH
Q psy11659         12 CNILLKWLQTF-T-L-VAPHQSLA-DITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYF   87 (684)
Q Consensus        12 ~~~l~~W~~tf-~-~-~~~~~~~~-dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~   87 (684)
                      ..+|+.|+|.- . . ..++.+|. ++.||++|..++|.+.|..++-..+.     +.+     ...|++..+..    -
T Consensus       123 ~~~ll~W~~~~~~~~~~~~v~nf~~s~~dg~~~~~li~~~~p~~~~~~~~~-----~~~-----~~~n~~~a~~~----a  188 (863)
T 1sjj_A          123 KEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLR-----KDD-----PLTNLNTAFDV----A  188 (863)
T ss_dssp             TTTTHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHTTCCSSSCSGGGG-----SCC-----CGGGCTHHHHH----H
T ss_pred             HHHHHHHHHHhccCCCCCCCCCCccccccHHHHHHHHHHhCCCCcChhhCC-----CCC-----HHHHHHHHHHH----H
Confidence            34799999952 2 1 33566664 79999999999999999998754321     222     34566655543    3


Q ss_pred             HHhhcccccCccccchhHHhh--cCCHHHHHHHH
Q psy11659         88 QEYFDQALGEFGKVDVHKIVE--NIDAKELARLM  119 (684)
Q Consensus        88 ~~~l~~~~~~~~~pd~~~ia~--~~d~~el~~ll  119 (684)
                      ...+|.|.    +.++.-|..  .||..-+...+
T Consensus       189 ~~~lg~~~----~l~~ed~~~~~~pd~~~~~~y~  218 (863)
T 1sjj_A          189 EKYLDIPK----MLDAEDIVGTARPDEKAIMTYV  218 (863)
T ss_dssp             HHHHCCCC----SCCHHHHTTCSSCCHHHHHHHH
T ss_pred             HHhCCCCC----ccCHHHHhCCCCCcHHHHHHHH
Confidence            33468652    345555543  45554443333

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}

Probab=90.38  E-value=0.64  Score=47.28  Aligned_cols=99  Identities=15%  Similarity=0.189  Sum_probs=62.7

Q ss_pred             hHHHHHHHHhhc--CCCCCCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHH
Q psy11659         11 LCNILLKWLQTF--TLVAPHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYF   87 (684)
Q Consensus        11 ~~~~l~~W~~tf--~~~~~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~   87 (684)
                      ....+..|+|+.  ....++.+ ++||.||++|..++..|-|..++.        ..+. +..-++.|+...++.+..  
T Consensus        74 Qkktft~WINs~L~~~~~~V~dL~~DL~DGvvL~~Lle~L~~~~l~~--------~~~~-~r~~kleNvn~aL~~lk~--  142 (296)
T 3f7p_A           74 QKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR--------EKGR-MRFHKLQNVQIALDYLRH--  142 (296)
T ss_dssp             HHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCCCCCC--------CCCS-SHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHcccCCCCcccHHHHHhhHHHHHHHHHHhcCCcccc--------cCCc-ChhhhhhhHHHHHHHHHH--
Confidence            456899999987  23445665 688999999999999999987753        1222 334567788777765543  


Q ss_pred             HHhhcccccCccccchhHHhhcCCHHHH-HHHHHHHHHHHh
Q psy11659         88 QEYFDQALGEFGKVDVHKIVENIDAKEL-ARLMQLILGCAI  127 (684)
Q Consensus        88 ~~~l~~~~~~~~~pd~~~ia~~~d~~el-~~ll~lvl~~av  127 (684)
                         .|..+.   -+...-|.. +++.-+ +-+.+|++...+
T Consensus       143 ---~gv~lv---~I~~~DIvd-Gn~kliLgLlW~Li~~~~i  176 (296)
T 3f7p_A          143 ---RQVKLV---NIRNDDIAD-GNPKLTLGLIWTIILHFQI  176 (296)
T ss_dssp             ---TTCCCT---TCCHHHHHT-TCHHHHHHHHHHHHHHHTT
T ss_pred             ---hCcccc---CCChhhhhc-cchHHHHHHHHHhhcccce
Confidence               454332   233344554 455544 444466665544

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K

Probab=89.94  E-value=0.95  Score=45.00  Aligned_cols=103  Identities=19%  Similarity=0.214  Sum_probs=64.2

Q ss_pred             HhHHHHHHHHhhc--CCCCCCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHH
Q psy11659         10 ELCNILLKWLQTF--TLVAPHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDY   86 (684)
Q Consensus        10 ~~~~~l~~W~~tf--~~~~~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y   86 (684)
                      .....+..|+|+.  ....++.+ ++||.||++|.+++..|.|...+.     ++ . +. +-.-++.|+...++.+.. 
T Consensus        27 ~q~~~f~~WiN~~L~~~~~~v~~l~~dl~DGv~L~~Lle~l~~~~v~k-----~~-~-~~-~~~~~~eNi~~aL~~~k~-   97 (254)
T 1wku_A           27 QQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPR-----PD-K-GK-MRFHKIANVNKALDFIAS-   97 (254)
T ss_dssp             HHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCSCCCC-----CC-S-CC-SHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHccccCCCccCHHHHccCHHHHHHHHHHhCcCCCCC-----CC-C-Cc-cHHHHHHhHHHHHHHHHH-
Confidence            3466899999987  34455555 589999999999999999976543     21 1 12 233556777777665543 


Q ss_pred             HHHhhcccccCccccchhHHhhcCCHHHH-HHHHHHHHHHHhcC
Q psy11659         87 FQEYFDQALGEFGKVDVHKIVENIDAKEL-ARLMQLILGCAINC  129 (684)
Q Consensus        87 ~~~~l~~~~~~~~~pd~~~ia~~~d~~el-~~ll~lvl~~av~~  129 (684)
                          .|.++..   +...-|.+ +++.-+ +-+-+|+....+..
T Consensus        98 ----~gv~lv~---I~~~DIvd-G~~kliLgLlW~li~~~~i~~  133 (254)
T 1wku_A           98 ----KGVKLVS---IGAEEIVD-GNLKMTLGMIWTIILRFAIQD  133 (254)
T ss_dssp             ----TTCCCCS---CCHHHHHH-CCHHHHHHHHHHHHHHHHTTT
T ss_pred             ----cCCCccC---CCHHHHhc-cchHHHHHHHHHHHHHHhhcc
Confidence                3543322   23444554 565544 44456666666543

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=89.91  E-value=6.4  Score=33.03  Aligned_cols=81  Identities=21%  Similarity=0.234  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy11659        190 DQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSK  269 (684)
Q Consensus       190 d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~~~~~~~~~~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~  269 (684)
                      |.|..++...+..+..-+.+.+.+..++......+.         .+.-|+.|++-++.....-..+++.+..+.++|..
T Consensus        27 ~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE---------~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~   97 (110)
T 2v4h_A           27 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVME---------TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQE   97 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHH
Confidence            334444444444444444444444444444333222         35567888887777666555556666666666666


Q ss_pred             HHHHHHHHHH
Q psy11659        270 QMEDLELKLN  279 (684)
Q Consensus       270 el~~l~~k~~  279 (684)
                      ++..|+.++.
T Consensus        98 ql~~Lq~q~~  107 (110)
T 2v4h_A           98 QLEQLQREFN  107 (110)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            6666655544

>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1

Probab=89.77  E-value=2.9  Score=36.19  Aligned_cols=73  Identities=26%  Similarity=0.323  Sum_probs=47.4

Q ss_pred             hHHhHHHHHHHHhhcCC---CCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHH
Q psy11659          8 QSELCNILLKWLQTFTL---VAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGI   83 (684)
Q Consensus         8 ~~~~~~~l~~W~~tf~~---~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i   83 (684)
                      +..--.+|+.|+|.---   ..++.++ .+..||.+|.-++|.+.|+.++-.-+.     ..+     ...|++..+.  
T Consensus         6 ~~~~~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~-----~~~-----~~~n~~~af~--   73 (118)
T 1bhd_A            6 QTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVV-----KMS-----PIERLEHAFS--   73 (118)
T ss_dssp             CSHHHHHHHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHH-----HSC-----HHHHHHHHHH--
T ss_pred             cCCHHHHHHHHHHHHhccCCCCCCCCCcccccCcHHHHHHHHHHCcCcCCHHHhC-----cCC-----HHHHHHHHHH--
Confidence            33456789999996421   2346655 467899999999999999998754332     122     3456665554  


Q ss_pred             HHHHHHhhccc
Q psy11659         84 VDYFQEYFDQA   94 (684)
Q Consensus        84 ~~y~~~~l~~~   94 (684)
                        .-.+.+|.+
T Consensus        74 --~Ae~~lgi~   82 (118)
T 1bhd_A           74 --KAQTYLGIE   82 (118)
T ss_dssp             --HHHHHHCCC
T ss_pred             --HHHHHcCCC
Confidence              233467864

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A

Probab=89.55  E-value=0.93  Score=44.80  Aligned_cols=104  Identities=17%  Similarity=0.205  Sum_probs=63.8

Q ss_pred             HhHHHHHHHHhhc--CCCCCCC-CccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHH
Q psy11659         10 ELCNILLKWLQTF--TLVAPHQ-SLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDY   86 (684)
Q Consensus        10 ~~~~~l~~W~~tf--~~~~~~~-~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y   86 (684)
                      .....+..|+|+.  ....++. =++||.||++|.+++..|.|....    .++...+.. . .-++.|+...++.+.. 
T Consensus        20 ~q~~~f~~WiN~~L~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~~~----~~~n~~~~~-~-~~~~eNv~~aL~~~k~-   92 (245)
T 2wa7_A           20 IQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMY----RKYHQRPTF-R-QMQLENVSVALEFLDR-   92 (245)
T ss_dssp             HHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCS----SCCCSSCCS-H-HHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhccccCCCccCHHHHcccHHHHHHHHHHHcCCCCc----hhcCCCCCc-H-HHHHHHHHHHHHHHHH-
Confidence            3456899999987  4444454 478999999999999999997652    233333322 2 2456787777765544 


Q ss_pred             HHHhhcccccCccccchhHHhhcCCHHHH-HHHHHHHHHHHhc
Q psy11659         87 FQEYFDQALGEFGKVDVHKIVENIDAKEL-ARLMQLILGCAIN  128 (684)
Q Consensus        87 ~~~~l~~~~~~~~~pd~~~ia~~~d~~el-~~ll~lvl~~av~  128 (684)
                          .|.++..   +...-|.+ +++.-+ +-+-+|++...+.
T Consensus        93 ----~g~~lv~---I~~~DIvd-G~~kliLgLlW~li~~~~i~  127 (245)
T 2wa7_A           93 ----ESIKLVS---IDSKAIVD-GNLKLILGLVWTLILHYSIS  127 (245)
T ss_dssp             ----TTCCCCS---CCHHHHHT-TCHHHHHHHHHHHHHHHHTT
T ss_pred             ----cCCcccC---CCHHHhhC-CCHHHHHHHHHHHHHHHccc
Confidence                3544322   23344554 455443 4455666665554

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=89.08  E-value=8.5  Score=31.67  Aligned_cols=37  Identities=35%  Similarity=0.478  Sum_probs=28.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        384 SEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK  420 (684)
Q Consensus       384 le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~  420 (684)
                      .+.++..|+..+..+..++.++..+++.+...+..++
T Consensus        54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k   90 (93)
T 3s4r_A           54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR   90 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777888888888888888888888887777665

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=88.96  E-value=1.3  Score=46.15  Aligned_cols=103  Identities=18%  Similarity=0.251  Sum_probs=66.2

Q ss_pred             HHHHHHHHhhc--CCCCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHH
Q psy11659         12 CNILLKWLQTF--TLVAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQ   88 (684)
Q Consensus        12 ~~~l~~W~~tf--~~~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~   88 (684)
                      ...+..|+|+.  ....++.++ .||.||++|..+|..|.+...+..+    ...+.  +..-++.|+...++.+..   
T Consensus        19 ~ktFt~WiN~~L~~~~~~V~dL~~Dl~DG~~L~~Lle~ls~~~l~~~~----~~~p~--~r~~k~eNv~~al~~~~~---   89 (347)
T 4b7l_A           19 QNTFTRWCNEHLKSVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKY----HQRPT--FRQMQLENVSVALEFLDR---   89 (347)
T ss_dssp             HHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCC----CSSCC--SHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHhhCcCCCCcCCHHHHhcCHHHHHHHHHHHcCCccChhh----cCCcc--cHHHHHHHHHHHHHHHHH---
Confidence            34799999986  456677774 7999999999999999987765321    11222  344567788777764432   


Q ss_pred             HhhcccccCccccchhHHhhcCCHHH-HHHHHHHHHHHHhcC
Q psy11659         89 EYFDQALGEFGKVDVHKIVENIDAKE-LARLMQLILGCAINC  129 (684)
Q Consensus        89 ~~l~~~~~~~~~pd~~~ia~~~d~~e-l~~ll~lvl~~av~~  129 (684)
                        .|..+.   -++..-|.. +++.- |+-+-+|++...+..
T Consensus        90 --~g~~lv---~i~~~DIvd-Gn~~liLgLiW~li~~~~i~~  125 (347)
T 4b7l_A           90 --ESIKLV---SIDSKAIVD-GNLKLILGLVWTLILHYSISM  125 (347)
T ss_dssp             --TTCCCS---SCCHHHHHT-TCHHHHHHHHHHHHHHHHTTS
T ss_pred             --hccccC---CCCcchhhc-CCHhhHHHHHHHHHHHHhhhh
Confidence              354332   245555665 56655 455557777666653

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1

Probab=88.89  E-value=0.56  Score=47.28  Aligned_cols=71  Identities=13%  Similarity=0.211  Sum_probs=46.8

Q ss_pred             HHhHHHHHHHHhhc-CC----------CCCCC-CccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcH
Q psy11659          9 SELCNILLKWLQTF-TL----------VAPHQ-SLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNL   76 (684)
Q Consensus         9 ~~~~~~l~~W~~tf-~~----------~~~~~-~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl   76 (684)
                      .+....+..|+|+. .-          +..+. =++||.||++|.+++..+.|...+..   .++..+.. .| -++.|+
T Consensus        23 ~~q~~~f~~WiN~~L~~~~~~~~~~~i~~~v~dl~~dL~DGv~L~~Lle~l~~~~v~~~---~i~~~~~~-~~-~~~eNv   97 (275)
T 1aoa_A           23 EEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDER---AINKKKLT-PF-IIQENL   97 (275)
T ss_dssp             HHHHHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGG---GSCCSSCC-HH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCccccccCCCCCccchHHHHhccHHHHHHHHHHhcCCCCCcc---ccCCCCCC-HH-HHHHHH
Confidence            35678999999985 21          11222 36899999999999999999876532   22222221 23 467788


Q ss_pred             HHHHHHHH
Q psy11659         77 KKINEGIV   84 (684)
Q Consensus        77 ~~i~~~i~   84 (684)
                      ...++.+.
T Consensus        98 ~~aL~~~k  105 (275)
T 1aoa_A           98 NLALNSAS  105 (275)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777554

>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=88.47  E-value=3.2  Score=36.87  Aligned_cols=68  Identities=16%  Similarity=0.386  Sum_probs=45.0

Q ss_pred             HHhHHHHHHHHhhc-CCCCCCCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHH
Q psy11659          9 SELCNILLKWLQTF-TLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIV   84 (684)
Q Consensus         9 ~~~~~~l~~W~~tf-~~~~~~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~   84 (684)
                      .++...+..||++. ..+-+.+=.+.|.||++|.++++.|.|....     +|+... . +| ..+.|+...++...
T Consensus        16 ~~~~~e~~~WIe~~l~~~~~~~l~~~L~DGvvLCkL~N~l~P~~v~-----ki~~~~-~-~f-~~~eNI~~Fl~a~~   84 (136)
T 1wyp_A           16 HQREQELREWIEGVTGRRIGNNFMDGLKDGIILCEFINKLQPGSVK-----KINEST-Q-NW-HQLENIGNFIKAIT   84 (136)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCSCTTHHHHTSHHHHHHHHHHSTTSSS-----CCCCSS-C-SH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCcHHHHHHHccHHhHHHHHHhhCCCCcc-----cccccc-c-ch-HHHHHHHHHHHHHH
Confidence            45778999999986 3333334457799999999999999997653     454332 2 44 23355555555443

>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A

Probab=88.46  E-value=3.7  Score=35.68  Aligned_cols=85  Identities=16%  Similarity=0.157  Sum_probs=52.0

Q ss_pred             HHHHHHHhhcC---CCCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHH
Q psy11659         13 NILLKWLQTFT---LVAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQ   88 (684)
Q Consensus        13 ~~l~~W~~tf~---~~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~   88 (684)
                      .+|+.|+|.--   ...++.+| .+..||.+|.-++|.+.|+.++-.-|     ++.+     ...|++..+.    .-.
T Consensus        12 ~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l-----~~~~-----~~~n~~~af~----~Ae   77 (121)
T 2d88_A           12 SKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSL-----DEQN-----VEKNNQLAFD----IAE   77 (121)
T ss_dssp             CHHHHHHHHHSTTSSSCCCCCSSHHHHTSHHHHHHHHHHCTTTSCTTTS-----CTTC-----HHHHHHHHHH----HHH
T ss_pred             HHHHHHHHHHhccCCCCCCCCchhhccccHHHHHHHHHhCcCcCCHHHc-----CccC-----HHHHHHHHHH----HHH
Confidence            47999999642   13346665 35789999999999999998864322     1111     3466665554    333


Q ss_pred             HhhcccccCccccchhHHhh--cCCHHHH
Q psy11659         89 EYFDQALGEFGKVDVHKIVE--NIDAKEL  115 (684)
Q Consensus        89 ~~l~~~~~~~~~pd~~~ia~--~~d~~el  115 (684)
                      +.||.+.    +.|+.-|+.  .||..-+
T Consensus        78 ~~lgi~~----lL~peD~~~~~~pD~ksi  102 (121)
T 2d88_A           78 KELGISP----IMTGKEMASVGEPDKLSM  102 (121)
T ss_dssp             HHTCCCC----SSCHHHHHHSSCCCHHHH
T ss_pred             HHcCCCC----cCCHHHHhccCCCcHHHH
Confidence            4578642    345555543  3555433

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A

Probab=88.40  E-value=1.9  Score=43.19  Aligned_cols=87  Identities=20%  Similarity=0.384  Sum_probs=53.8

Q ss_pred             HHHHHHHHhhcCCCCCCCCcc-ccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHHHh
Q psy11659         12 CNILLKWLQTFTLVAPHQSLA-DITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEY   90 (684)
Q Consensus        12 ~~~l~~W~~tf~~~~~~~~~~-dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~~~   90 (684)
                      -.+|+.|+|.--.+.++.+|. +..||.+|..++|.+.|..+++ | ..+  ++.+     ...|++..+.    .-.+.
T Consensus       172 k~~LL~W~n~~~~~~~I~nFs~sw~DG~af~aLi~~~~P~li~d-~-~~l--~~~~-----~~~n~~~Af~----~Ae~~  238 (272)
T 3hoc_A          172 KQRLLGWIQNKLPQLPITNFSRDWQSGRALGALVDSCAPGLCPD-W-DSW--DASK-----PVTNAREAMQ----QADDW  238 (272)
T ss_dssp             HHHHHHHHHHHCTTSCCCCSSGGGTTSHHHHHHHHHHSTTSSTT-G-GGS--CTTC-----HHHHHHHHHH----HHHHH
T ss_pred             HHHHHHHHHhhCCCCCCCChhhcccchHHHHHHHHHhCcccccc-h-hhc--CccC-----HHHHHHHHHH----HHHHh
Confidence            568999999632245677775 5899999999999999998842 1 111  1222     4567766554    33344


Q ss_pred             hcccccCccccchhHHhh-cCCHHHH
Q psy11659         91 FDQALGEFGKVDVHKIVE-NIDAKEL  115 (684)
Q Consensus        91 l~~~~~~~~~pd~~~ia~-~~d~~el  115 (684)
                      +|.+.    +.|+.-|.. .||+.-+
T Consensus       239 lGi~~----ll~peDiv~~~pD~ksi  260 (272)
T 3hoc_A          239 LGIPQ----VITPEEIVDPNVDKHSV  260 (272)
T ss_dssp             HCCCC----SSCHHHHTCTTCCHHHH
T ss_pred             CCCCc----cCCHHHhccCCCChHHH
Confidence            78652    344444544 3555443

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=87.94  E-value=2  Score=47.29  Aligned_cols=97  Identities=16%  Similarity=0.146  Sum_probs=62.4

Q ss_pred             HHHHHHHhh-cC---CCCCCCCcc--ccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHH
Q psy11659         13 NILLKWLQT-FT---LVAPHQSLA--DITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDY   86 (684)
Q Consensus        13 ~~l~~W~~t-f~---~~~~~~~~~--dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y   86 (684)
                      .+|+.|+|. +.   -..++.+|.  ++.||++|..++|.+.|..++-..   +.  +++ +-.-+..|++..+.--   
T Consensus       400 ~~LL~W~~~~~~~~~~~~~i~nF~d~s~~dG~a~~aLi~~~~P~li~~~~---l~--~~~-s~~~~~~N~~~a~~~a---  470 (506)
T 1pxy_A          400 ADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNL---VT--KGE-TDDEKRLNATYIVSVA---  470 (506)
T ss_dssp             HHHHHHHHHHHHTTTCCCCCSSTTCGGGGGCHHHHHHHHHHCGGGCCTTS---CC--CSC-SHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHhhhcCCccccCCCCcccccchHHHHHHHHhhCCCeeehhh---cc--cCC-CchhHHHHHHHHHHHH---
Confidence            589999994 22   245788896  899999999999999999886422   21  211 1123557777766522   


Q ss_pred             HHHhhcccccCccccchhHHhhcCCHHHHHHHHHHHHHH
Q psy11659         87 FQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGC  125 (684)
Q Consensus        87 ~~~~l~~~~~~~~~pd~~~ia~~~d~~el~~ll~lvl~~  125 (684)
                        +.+|.+.    +.|+.-|.. +|+..+...+.-+...
T Consensus       471 --~~lGi~~----~l~peDi~~-~d~ksi~tyv~~l~~~  502 (506)
T 1pxy_A          471 --RKLGCSV----FLLPEDIVE-VNQKMILILTASIMYW  502 (506)
T ss_dssp             --HHHTCCC----CCCHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             --HHcCCCC----cCCHHHccC-CChhHHHHHHHHHHHH
Confidence              3478642    456666664 5776665555544443

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=87.87  E-value=11  Score=31.73  Aligned_cols=34  Identities=26%  Similarity=0.238  Sum_probs=22.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        381 ADKSEFENKKLQEKVTSLQREKEKLIVERDSLKE  414 (684)
Q Consensus       381 ~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e  414 (684)
                      +..++.+++.|..+|.++..++++++.+...+.-
T Consensus        73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~  106 (121)
T 3mq7_A           73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSV  106 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence            5566677777777777777777666665554443

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=87.26  E-value=8.8  Score=32.22  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=10.8

Q ss_pred             HHHHHHHhhchHHHHHHHHHHHH
Q psy11659        346 LEEELKKNGNWKSQVDMYKKQMS  368 (684)
Q Consensus       346 LEeel~~~~~~r~~le~~k~qi~  368 (684)
                      ..+.+..+.-++.+++-|+....
T Consensus        57 ~~~~lE~I~vLkaQv~IY~~DF~   79 (110)
T 2v4h_A           57 HKIVMETVPVLKAQADIYKADFQ   79 (110)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc
Confidence            33333444444555555555443

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=87.13  E-value=7.2  Score=31.15  Aligned_cols=56  Identities=18%  Similarity=0.095  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        363 YKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEE  418 (684)
Q Consensus       363 ~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~e  418 (684)
                      ....+..++..+.+...+....+.++..|+.++..++.++++....+......+++
T Consensus        18 a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee   73 (81)
T 1ic2_A           18 ALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL   73 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444445555666666667777777777766666555554444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=86.83  E-value=19  Score=40.03  Aligned_cols=29  Identities=14%  Similarity=0.264  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        391 LQEKVTSLQREKEKLIVERDSLKETNEEL  419 (684)
Q Consensus       391 L~~~l~~le~e~e~l~~e~~~L~e~~~eL  419 (684)
                      ++.+++........+..+...+..++.+|
T Consensus       549 le~~~~~~~~~~~~l~~e~~~~~~~~~~l  577 (597)
T 3oja_B          549 LEKQLDNKRAKQAELRQETSLKRQKVKQL  577 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333344444444444

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K

Probab=86.71  E-value=2.3  Score=42.13  Aligned_cols=90  Identities=24%  Similarity=0.331  Sum_probs=55.3

Q ss_pred             HHHHHHHHhhc-C-C-CCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHH
Q psy11659         12 CNILLKWLQTF-T-L-VAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYF   87 (684)
Q Consensus        12 ~~~l~~W~~tf-~-~-~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~   87 (684)
                      ..+|+.|+|.- . . ..++.+| .++.||.+|..++|.+.|..++-+.+     .+.+     ...|++.++.    .-
T Consensus       142 ~~~LL~W~~~~~~~y~~v~v~nFs~s~~DG~a~~aLi~~~~P~~id~~~l-----~~~~-----~~~n~~~a~~----~A  207 (254)
T 1wku_A          142 KEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKL-----RKDD-----PIGNLNTAFE----VA  207 (254)
T ss_dssp             HHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCTTSCCGGGC-----CTTC-----HHHHHHHHHH----HH
T ss_pred             HHHHHHHHHHHccCCCCCcCCCCccchhhHHHHHHHHHHHCCCccccccc-----CcCC-----HHHHHHHHHH----HH
Confidence            46899999952 1 1 3356666 47999999999999999998864322     1222     3456665554    33


Q ss_pred             HHhhcccccCccccchhHHhh--cCCHHHHHHHH
Q psy11659         88 QEYFDQALGEFGKVDVHKIVE--NIDAKELARLM  119 (684)
Q Consensus        88 ~~~l~~~~~~~~~pd~~~ia~--~~d~~el~~ll  119 (684)
                      .+.+|.+.    +.++.-|..  .||..-+.-.+
T Consensus       208 ~~~lGi~~----~l~peDiv~~~~pD~k~imtyv  237 (254)
T 1wku_A          208 EKYLDIPK----MLDAEDIVNTPKPDEKAIMTYV  237 (254)
T ss_dssp             HHHSCCCC----CSCHHHHHHSSSCCHHHHHHHH
T ss_pred             HHHcCCCC----cCCHHHHhccCCCcHHHHHHHH
Confidence            44578652    344555533  35654443333

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=86.46  E-value=3.1  Score=45.81  Aligned_cols=82  Identities=21%  Similarity=0.319  Sum_probs=54.8

Q ss_pred             HHHHHHHHhhc-C---CCCCCCCcc-ccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHH
Q psy11659         12 CNILLKWLQTF-T---LVAPHQSLA-DITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDY   86 (684)
Q Consensus        12 ~~~l~~W~~tf-~---~~~~~~~~~-dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y   86 (684)
                      ..+|+.|+|.. .   -..++.+|. |+.||++|.-++|.+.|..++-..+     ++.+     ...|++.++..    
T Consensus       163 ~~~LL~W~n~~l~~~g~~~~V~nFs~s~~DG~a~~aLl~~~~P~~i~~~~l-----~~~~-----~~~n~~~a~~~----  228 (513)
T 1rt8_A          163 EKILLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSRAPL-----QTTD-----VLQRAEQVLQN----  228 (513)
T ss_dssp             HHHHHHHHHHHHHHTTCSCCCSCSSGGGTTSHHHHHHHHHHCTTTCCSGGG-----GCCC-----HHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHhcCCCcCcccchhhhhccHHHHHHHHHHCccccccCCC-----CccC-----HHHHHHHHHHH----
Confidence            57899999953 2   224677776 6999999999999999998874221     1222     34677766663    


Q ss_pred             HHHhhcccccCccccchhHHhhcCCHH
Q psy11659         87 FQEYFDQALGEFGKVDVHKIVENIDAK  113 (684)
Q Consensus        87 ~~~~l~~~~~~~~~pd~~~ia~~~d~~  113 (684)
                      -.+ +|.+    ++.++.-|.. +|+.
T Consensus       229 a~~-lgi~----~~l~peDi~~-~~~k  249 (513)
T 1rt8_A          229 AEK-LDCR----KYLTPTAMVA-GNPK  249 (513)
T ss_dssp             HHT-TTCC----CSCCHHHHHT-TCHH
T ss_pred             HHH-cCCC----ccCCHHHhcC-CCHH
Confidence            233 7864    2466666765 5663

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=86.44  E-value=1.1  Score=52.95  Aligned_cols=68  Identities=21%  Similarity=0.242  Sum_probs=49.0

Q ss_pred             HhHHHHHHHHhhc--CCCCCCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHH
Q psy11659         10 ELCNILLKWLQTF--TLVAPHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVD   85 (684)
Q Consensus        10 ~~~~~l~~W~~tf--~~~~~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~   85 (684)
                      .-..++..|||+.  ....++.+ +.||.||++|..++..|.|...+.     ++  .+. +..-++.|+...+..+..
T Consensus         8 ~q~~~f~~Win~~L~~~~~~v~~l~~dl~DG~~L~~l~e~l~~~~~~~-----~~--~~~-~~~~~~eN~~~~l~~~~~   78 (863)
T 1sjj_A            8 QQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAK-----PE--RGK-MRVHKISNVNKALDFIAS   78 (863)
T ss_dssp             HHHHHHHHHHHHHHHHHCSCCCCCSSTTSSCHHHHHHHHHTSCCCCCC-----SC--CCS-SHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCCccCHHHHhcCHHHHHHHHHHhCCCceeC-----CC--CCc-cHHHHHHHHHHHHHHHHH
Confidence            3456899999997  44556655 589999999999999999987653     11  122 344567788877775553

>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}

Probab=86.40  E-value=2.5  Score=37.06  Aligned_cols=70  Identities=20%  Similarity=0.337  Sum_probs=47.1

Q ss_pred             HhHHHHHHHHhhcC-CCC---CC---CCc--cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHH
Q psy11659         10 ELCNILLKWLQTFT-LVA---PH---QSL--ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKIN   80 (684)
Q Consensus        10 ~~~~~l~~W~~tf~-~~~---~~---~~~--~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~   80 (684)
                      .....++.||+..- +..   |.   .++  +-|-|||+|.++++.|.|...+     +|...+.. .| ..+.|+...+
T Consensus        12 ~~~~e~~~WI~~~~~L~~~~~~~~~~~~~l~~~LkdGvvLCkLiN~l~Pg~i~-----kI~~~~~~-~f-~~~eNI~~FL   84 (126)
T 2l3g_A           12 NSAEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIE-----KVYPEPRS-ES-ECLSNIREFL   84 (126)
T ss_dssp             CHHHHHHHHHHHTTSSCCCSSCCSCHHHHHHHHHTTSHHHHHHHHHHSTTCCS-----CCCSSCCS-HH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccccCCCCCChhhHHHHHHccHHHHHHHHHHhCCCCCC-----ccCCCCCc-ch-HHHHHHHHHH
Confidence            46788999999963 222   22   232  6677999999999999997665     45434433 34 3346777777


Q ss_pred             HHHHHH
Q psy11659         81 EGIVDY   86 (684)
Q Consensus        81 ~~i~~y   86 (684)
                      +....|
T Consensus        85 ~a~~~~   90 (126)
T 2l3g_A           85 RGCGAS   90 (126)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            776664

>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}

Probab=86.37  E-value=1.9  Score=37.86  Aligned_cols=69  Identities=16%  Similarity=0.189  Sum_probs=45.2

Q ss_pred             HHHHHHHHhhc--CC-CCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHH
Q psy11659         12 CNILLKWLQTF--TL-VAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYF   87 (684)
Q Consensus        12 ~~~l~~W~~tf--~~-~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~   87 (684)
                      -.+|+.|+|.-  +. ..++.++ .+..||.+|.-++|.+.|+.++-.-   +  ...+     ...|++..+.    .-
T Consensus         9 k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~Af~aLih~~~P~lid~~~---l--~~~~-----~~~n~~~af~----~A   74 (127)
T 1wyq_A            9 KDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFES---L--KKCN-----AHYNLQNAFN----LA   74 (127)
T ss_dssp             THHHHHHHHHHHHTSSSCCCSCSSTTSSSSHHHHHHHHHHCTTTCCTTT---S--CSSC-----CHHHHHHHHH----HH
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcccccccHHHHHHHHHHCcCcCCHHH---h--CcCC-----HHHHHHHHHH----HH
Confidence            46799999953  11 3346655 5689999999999999999886432   2  1122     3456665554    33


Q ss_pred             HHhhccc
Q psy11659         88 QEYFDQA   94 (684)
Q Consensus        88 ~~~l~~~   94 (684)
                      .+.||.+
T Consensus        75 e~~Lgi~   81 (127)
T 1wyq_A           75 EKELGLT   81 (127)
T ss_dssp             HHTTCCC
T ss_pred             HHHcCCC
Confidence            4567864

>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1

Probab=86.25  E-value=3  Score=35.44  Aligned_cols=66  Identities=18%  Similarity=0.377  Sum_probs=42.6

Q ss_pred             hHHHHHHHHhhc-CCCCCCCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHH
Q psy11659         11 LCNILLKWLQTF-TLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIV   84 (684)
Q Consensus        11 ~~~~l~~W~~tf-~~~~~~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~   84 (684)
                      ....+..||++. +.+-+.+=.+.|.||++|.++++.|.|...+     +|+... . .| ..+.|+...++...
T Consensus         4 ~e~e~~~WIe~~l~~~~~~~l~~~L~dGvvLCkL~N~l~P~~v~-----ki~~~~-~-~f-~~~eNI~~Fl~a~~   70 (108)
T 1h67_A            4 TERQLRVWIEGATGRRIGDNFMDGLKDGVILCELINKLQPGSVQ-----KVNDPV-Q-NW-HKLENIGNFLRAIK   70 (108)
T ss_dssp             SSHHHHHHHHHHHSCCCCSCHHHHHHHCSHHHHHHHHHSTTSST-----TCCCTT-S-SH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHccHHHHHHHHHHhCCCCcc-----cccccc-c-ch-HHHHHHHHHHHHHH
Confidence            345689999976 4333333457799999999999999997654     354332 2 34 23355555555443

>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=86.24  E-value=3.1  Score=37.50  Aligned_cols=67  Identities=19%  Similarity=0.414  Sum_probs=43.6

Q ss_pred             HhHHHHHHHHhhc-CCCCCCCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHH
Q psy11659         10 ELCNILLKWLQTF-TLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIV   84 (684)
Q Consensus        10 ~~~~~l~~W~~tf-~~~~~~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~   84 (684)
                      ++...+..||++. ..+-+.+=.+.|.||++|.++++.|.|....     +|+... . .| ..+.|+...++...
T Consensus        17 ~~~~e~~~WIe~~l~~~i~~~l~~~L~DGvvLCkL~N~l~P~~v~-----kin~~~-~-~f-~~~eNI~~FL~a~~   84 (146)
T 1wyn_A           17 QKEAELRTWIEGLTGLSIGPDFQKGLKDGTILCTLMNKLQPGSVP-----KINRSM-Q-NW-HQLENLSNFIKAMV   84 (146)
T ss_dssp             THHHHHHHHHHHHHCCCCCSCHHHHHHTTSHHHHHHHHHCTTSCS-----CCCCSS-C-HH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCcHHHHHHHccHHHHHHHHHHhCCCCcc-----cccccc-c-cc-cHHHHHHHHHHHHH
Confidence            4678999999976 3332333356799999999999999997653     454332 2 34 23345555555443

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}

Probab=86.24  E-value=3.4  Score=41.85  Aligned_cols=69  Identities=14%  Similarity=0.152  Sum_probs=46.6

Q ss_pred             HHHHHHHHhhcC---CCCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHH
Q psy11659         12 CNILLKWLQTFT---LVAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYF   87 (684)
Q Consensus        12 ~~~l~~W~~tf~---~~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~   87 (684)
                      .++|+.|+|.--   ...++.+| .+..||.+|..++|.+.|..++-..+.     +.+     ...|++..+.    .-
T Consensus       191 k~~LL~W~n~~~~~y~~v~I~nFs~sw~DG~af~aLI~~~~P~lid~~~l~-----~~~-----~~~N~~~Af~----~A  256 (296)
T 3f7p_A          191 KEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVY-----RQT-----NLENLDQAFS----VA  256 (296)
T ss_dssp             HHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHHHCGGGCCHHHHT-----TSC-----HHHHHHHHHH----HH
T ss_pred             HHHHHHHHHHHhcCCCCCcCCCccccccccHHHHHHHHHHCcCccCHHHcC-----ccc-----HHHHHHHHHH----HH
Confidence            568999999542   13456666 789999999999999999988754331     222     3457665544    33


Q ss_pred             HHhhccc
Q psy11659         88 QEYFDQA   94 (684)
Q Consensus        88 ~~~l~~~   94 (684)
                      ...+|.+
T Consensus       257 e~~LGi~  263 (296)
T 3f7p_A          257 ERDLGVT  263 (296)
T ss_dssp             HHHHCCC
T ss_pred             HHhCCCC
Confidence            3456764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=86.05  E-value=5.6  Score=44.37  Aligned_cols=41  Identities=12%  Similarity=0.190  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHH
Q psy11659        531 QNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQD  571 (684)
Q Consensus       531 ~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~  571 (684)
                      ..+++.+++++..++.+.+....++.++..+......+++.
T Consensus       536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~  576 (597)
T 3oja_B          536 QKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ  576 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444443

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=85.85  E-value=0.94  Score=49.89  Aligned_cols=69  Identities=12%  Similarity=0.168  Sum_probs=48.2

Q ss_pred             hHHHHHHHHhhcCCCCCCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHH
Q psy11659         11 LCNILLKWLQTFTLVAPHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGI   83 (684)
Q Consensus        11 ~~~~l~~W~~tf~~~~~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i   83 (684)
                      ....+..|+|+..++.++.+ ++||.||++|.+++..|.|...+..   .++..++.+.|. ++.|....++.+
T Consensus       277 q~ktf~~WiN~~~~~~~v~dl~~Dl~DG~~L~~Lle~l~~~~~~~~---~~~~~~~~~r~~-~leNv~~aL~~~  346 (506)
T 1pxy_A          277 DERCYRLWINSLGIDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWK---HASKPPIKMPFR-KVENCNQVIKIG  346 (506)
T ss_dssp             HHHHHHHHHTTTTCSSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGG---GCCCSSCCCHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCcccHHHHHHhHHHHHHHHHHHcCCccccc---cccCCccccHHH-HHHHHHHHHHHH
Confidence            35579999999876656666 6899999999999999999866532   233333332343 667777666543

>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=85.78  E-value=2.2  Score=37.15  Aligned_cols=70  Identities=16%  Similarity=0.277  Sum_probs=46.1

Q ss_pred             HhHHHHHHHHhhcC-CCC---CC---CC--ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHH
Q psy11659         10 ELCNILLKWLQTFT-LVA---PH---QS--LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKIN   80 (684)
Q Consensus        10 ~~~~~l~~W~~tf~-~~~---~~---~~--~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~   80 (684)
                      +....++.||++.- +..   |.   .+  .+.|.||++|.++++.|.|...+     +|...+.. .| ..+.|+...+
T Consensus         6 ~~e~e~~~WI~~~~~l~~~~~~~~~~~~~l~~~L~dGvvLCkL~N~l~Pg~i~-----ki~~~~~~-~f-~~~eNI~~FL   78 (121)
T 1wyr_A            6 SGEEQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVE-----KFCLDPQT-EA-DCINNINDFL   78 (121)
T ss_dssp             CSHHHHHHHHHHHTSSCCCSSCCSCHHHHHHHHHHHSHHHHHHHHHHSTTCCS-----CCCSSCCS-HH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcCCcccCCCCcHHHHHHHHccHHHHHHHHHHhCCCCCC-----cCCCCCcc-hH-HHHHHHHHHH
Confidence            46778999999873 222   11   12  37788999999999999997654     45433332 34 3446666666


Q ss_pred             HHHHHH
Q psy11659         81 EGIVDY   86 (684)
Q Consensus        81 ~~i~~y   86 (684)
                      +....|
T Consensus        79 ~a~~~~   84 (121)
T 1wyr_A           79 KGCATL   84 (121)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            666554

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A

Probab=85.54  E-value=0.9  Score=44.87  Aligned_cols=100  Identities=15%  Similarity=0.176  Sum_probs=60.4

Q ss_pred             HhHHHHHHHHhhcC-------CCCCCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHH
Q psy11659         10 ELCNILLKWLQTFT-------LVAPHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINE   81 (684)
Q Consensus        10 ~~~~~l~~W~~tf~-------~~~~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~   81 (684)
                      .....+..|+|+.-       .+.++.+ ++||.||++|.+++..|.|...+.        ..+. +..-++.|+...++
T Consensus        12 ~q~~~f~~WiN~~L~~~~~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~--------~~~~-~~~~~~eNv~~aL~   82 (245)
T 1sh5_A           12 VQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR--------EKGR-MRFHKLQNVQIALD   82 (245)
T ss_dssp             HHHHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCCC--------CCCC-SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccccCCCCccchHhhccCHHHHHHHHHHhcCccccC--------CCCc-chHHHHHhHHHHHH
Confidence            34568999999862       2334444 789999999999999999876542        1122 33446778877777


Q ss_pred             HHHHHHHHhhcccccCccccchhHHhhcCCHHHH-HHHHHHHHHHHh
Q psy11659         82 GIVDYFQEYFDQALGEFGKVDVHKIVENIDAKEL-ARLMQLILGCAI  127 (684)
Q Consensus        82 ~i~~y~~~~l~~~~~~~~~pd~~~ia~~~d~~el-~~ll~lvl~~av  127 (684)
                      .+..     .|..+..   +...-|.. +++.-+ +-+-+|+...-+
T Consensus        83 ~~k~-----~g~~l~~---I~~~DIvd-g~~k~iLgLlw~li~~~~i  120 (245)
T 1sh5_A           83 YLRH-----RQVKLVN---IRNDDIAD-GNPKLTLGLIWTIILHFQI  120 (245)
T ss_dssp             HHHH-----TTCCCCS---CCHHHHHT-TCHHHHHHHHHHHHHHHTT
T ss_pred             HHHH-----cCCcccC---CChHhhhc-ccHHHHHHHHHHHHHhhcc
Confidence            5544     3544322   23334544 455443 334455554444

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=85.44  E-value=9.6  Score=33.82  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=8.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHH
Q psy11659        381 ADKSEFENKKLQEKVTSLQREK  402 (684)
Q Consensus       381 ~~~le~e~~~L~~~l~~le~e~  402 (684)
                      .+.+..++..++.++..++...
T Consensus       105 ~e~~~~e~~~l~~~~~~l~~~~  126 (138)
T 3hnw_A          105 AESSAKEIKELKSEINKYQKNI  126 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333444444333333

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=85.20  E-value=15  Score=33.01  Aligned_cols=84  Identities=15%  Similarity=0.153  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11659        327 KQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLI  406 (684)
Q Consensus       327 ~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~  406 (684)
                      +..+.|+........++..|+.+++.+   +..       ..+...++.+...++.-++.++.+..++....+.....|.
T Consensus        38 R~~k~lE~r~~~deEr~~~lE~qLkea---k~~-------aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLE  107 (147)
T 2b9c_A           38 RGMKVIESRAQKDEEKMEIQEIQLKEA---KHI-------AEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELE  107 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHH---HHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555556666777777777766   333       3355556666666666677777777777766666655555


Q ss_pred             HHHHHHHHHHHHHH
Q psy11659        407 VERDSLKETNEELK  420 (684)
Q Consensus       407 ~e~~~L~e~~~eL~  420 (684)
                      .++...-..+..|+
T Consensus       108 eeL~~~~~nlKsLE  121 (147)
T 2b9c_A          108 EELKTVTNNLKSLE  121 (147)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhH
Confidence            55555544444443

>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=85.11  E-value=4.4  Score=37.03  Aligned_cols=91  Identities=15%  Similarity=0.161  Sum_probs=51.3

Q ss_pred             HHHHHHHHhhc-CCCCC--CCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHH
Q psy11659         12 CNILLKWLQTF-TLVAP--HQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQ   88 (684)
Q Consensus        12 ~~~l~~W~~tf-~~~~~--~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~   88 (684)
                      ...+..||++. ...-|  .+=.+-|.|||+|.++++.|.|....     +|...+.. .|. .+.|+...++...    
T Consensus        13 ~~e~~~WIe~~l~~~l~~~~~l~~~LkdGvvLCkL~N~l~P~~i~-----kI~~~~~~-~f~-~~eNI~~FL~a~~----   81 (159)
T 1p2x_A           13 VDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLI-----KIFYSNEL-QFR-HSDNINKFLDFIH----   81 (159)
T ss_dssp             HHHHHHHHHHHHTSCCCCGGGHHHHTTTSHHHHHHHHHHCTTSCC-----CCCCCSSC-CTT-HHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCcc-----ccccccCC-cch-HHHHHHHHHHHHH----
Confidence            36799999976 32222  12245699999999999999997642     45433333 452 3345554444443    


Q ss_pred             HhhcccccCccccchhHHhhcCCHHHHH
Q psy11659         89 EYFDQALGEFGKVDVHKIVENIDAKELA  116 (684)
Q Consensus        89 ~~l~~~~~~~~~pd~~~ia~~~d~~el~  116 (684)
                       .+|.+..  .++...-+-+..+...+.
T Consensus        82 -~~Gv~~~--~lF~~~DL~e~kn~~~Vi  106 (159)
T 1p2x_A           82 -GIGLPEI--FHFELTDIYEGKNLPKVI  106 (159)
T ss_dssp             -HTTCCGG--GCCCHHHHSSCSCHHHHH
T ss_pred             -HcCCCcc--cccCHHHHHhcCCHHHHH
Confidence             2454322  233444454545544433

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=85.08  E-value=1.2  Score=49.12  Aligned_cols=70  Identities=14%  Similarity=0.218  Sum_probs=48.1

Q ss_pred             hHHHHHHHHhhcCCCCCCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccccC----CcchhhhhhcHHHHHHHHH
Q psy11659         11 LCNILLKWLQTFTLVAPHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIG----ANNWRLKISNLKKINEGIV   84 (684)
Q Consensus        11 ~~~~l~~W~~tf~~~~~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~----~~nw~l~~~Nl~~i~~~i~   84 (684)
                      ....+..|+|+..+..++.+ ++||.||++|.+++..|-|..-+.   .+++..|.    . +-.-++.|+...++.+.
T Consensus       286 q~k~f~~WiN~~~~~~~v~~l~~DL~DG~~L~~Lle~l~~g~v~~---~~~~~~p~~~~~~-~r~~~~eNv~~al~~~~  360 (513)
T 1rt8_A          286 EARVFTLWLNSLDVTPSIHDFFNNLRDGLILLQAYDKITPNTVNW---KKVNKAPASGDEM-MRFKAVENCNYAVDLGK  360 (513)
T ss_dssp             HHHHHHHHHHHTTCSSCCSCHHHHTTTSHHHHHHHHHHSTTCCCG---GGSCCCCTTSCCC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCccCHHHHHhhHHHHHHHHHHhCCCCcch---hhhcCCccccccc-chHHHHHHHHHHHHHHH
Confidence            34579999999977767776 799999999999999888875432   23333221    1 22356667776666443

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A

Probab=85.02  E-value=4.3  Score=39.92  Aligned_cols=68  Identities=13%  Similarity=0.197  Sum_probs=46.2

Q ss_pred             HHhHHHHHHHHhhcCC--C-CCCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHH
Q psy11659          9 SELCNILLKWLQTFTL--V-APHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIV   84 (684)
Q Consensus         9 ~~~~~~l~~W~~tf~~--~-~~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~   84 (684)
                      ......+..|+|+.-.  . .++.+ ++||.||++|.+++..|.|..++.     +   .+. +-.-++.|+...++.+.
T Consensus        15 ~~q~~~f~~WiN~~L~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~-----~---~~~-~~~~~~eNv~~aL~~~k   85 (246)
T 1dxx_A           15 DVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPK-----E---KGS-TRVHALNNVNKALRVLQ   85 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCCCC-----C---CCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCCCccCHHHHhCcHHHHHHHHHHHcCCcCCC-----C---CCc-cHHHHHHHHHHHHHHHH
Confidence            3456689999998631  2 24544 789999999999999999876642     1   122 22346677777776544


Q ss_pred             H
Q psy11659         85 D   85 (684)
Q Consensus        85 ~   85 (684)
                      .
T Consensus        86 ~   86 (246)
T 1dxx_A           86 N   86 (246)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=84.76  E-value=22  Score=31.99  Aligned_cols=23  Identities=26%  Similarity=0.239  Sum_probs=9.7

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHH
Q psy11659        379 KRADKSEFENKKLQEKVTSLQRE  401 (684)
Q Consensus       379 ~~~~~le~e~~~L~~~l~~le~e  401 (684)
                      .....++..+..|+.++.+...-
T Consensus       108 ~~~~~~e~r~~~L~~ql~e~~~~  130 (154)
T 2ocy_A          108 KEKYAIEILNKRLTEQLREKDTL  130 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444333

>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=84.54  E-value=3.3  Score=39.53  Aligned_cols=66  Identities=17%  Similarity=0.205  Sum_probs=41.2

Q ss_pred             hHHHHHHHHhhc-CCCCC--CCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHH
Q psy11659         11 LCNILLKWLQTF-TLVAP--HQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGI   83 (684)
Q Consensus        11 ~~~~l~~W~~tf-~~~~~--~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i   83 (684)
                      ....+..||+.+ ...-|  .+=.+.|.|||+|.++++.|.|....     +|...+.. .| ..+.|+...++..
T Consensus        56 ~~~e~~~WIe~~l~~~l~~~~~f~~~LrDGvvLCkLiN~l~P~sv~-----kI~~~s~~-~f-~~~eNI~~FL~ac  124 (203)
T 1p5s_A           56 RVDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLI-----KIFYSNEL-QF-RHSDNINKFLDFI  124 (203)
T ss_dssp             HHHHHHHHHHHHHTSCCCCGGGHHHHHTTSHHHHHHHHHHCTTSCC-----CCCCCSSS-CC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCcc-----cccCCCCC-cc-hHHHHHHHHHHHH
Confidence            457899999986 33222  12246699999999999999997652     45322333 44 2334554444443

>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}

Probab=84.23  E-value=3.8  Score=37.25  Aligned_cols=41  Identities=20%  Similarity=0.442  Sum_probs=30.7

Q ss_pred             HHhHHHHHHHHhhc-CCCCCC-----CC-ccccccHHHHHHHHHhhCC
Q psy11659          9 SELCNILLKWLQTF-TLVAPH-----QS-LADITDGVAMAQALHQIAP   49 (684)
Q Consensus         9 ~~~~~~l~~W~~tf-~~~~~~-----~~-~~dL~dG~~l~~vl~~idp   49 (684)
                      .++...+..||+.. ...-|.     .+ .+-|.|||+|.++++.|.|
T Consensus        16 ~~~e~e~~~WIe~~l~~~l~~~~~~~~~~~~~LkDGvvLCkL~N~l~P   63 (155)
T 1wym_A           16 ADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYP   63 (155)
T ss_dssp             HHHHHHHHHHHHHHSSSCCCCCCSSHHHHHHHHHTSHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHcchHHHHHHHHHhcc
Confidence            46788999999976 322221     12 3558999999999999999

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=82.82  E-value=11  Score=40.35  Aligned_cols=89  Identities=12%  Similarity=0.083  Sum_probs=46.2

Q ss_pred             hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhHhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhH
Q psy11659        475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKER---VTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQ  551 (684)
Q Consensus       475 ~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l---~~~~~~~lk~kl~e~~~ele~~r~~l~~le~q~~~~  551 (684)
                      .+|.+|..++++..+.....+.-.+.+...+..-+.+..+.   ..+.+..|++++..+..++...-..+..|+.-+++.
T Consensus        64 krINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq  143 (562)
T 3ghg_A           64 NRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQ  143 (562)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67778888888776666555555444433332222222222   122234566666666666666555666666444444


Q ss_pred             HHHHHHHHHHHH
Q psy11659        552 GKLIEKLQDSIT  563 (684)
Q Consensus       552 ~~~~~~l~~~L~  563 (684)
                      ..++..|+-++.
T Consensus       144 ~~kIQRLEvDId  155 (562)
T 3ghg_A          144 LVDMKRLEVDID  155 (562)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            444444444443

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A

Probab=82.74  E-value=5.3  Score=39.27  Aligned_cols=44  Identities=23%  Similarity=0.420  Sum_probs=34.3

Q ss_pred             HHHHHHHHhhc-C-C-CCCCCCc-cccccHHHHHHHHHhhCCCcCChh
Q psy11659         12 CNILLKWLQTF-T-L-VAPHQSL-ADITDGVAMAQALHQIAPEWFSEM   55 (684)
Q Consensus        12 ~~~l~~W~~tf-~-~-~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~   55 (684)
                      ..+|+.|+|.- . . ..++.+| .++.||.+|..++|.+.|..++-.
T Consensus       137 ~~~LL~W~~~~~~~~~~~~i~nFs~s~~DG~a~~aLi~~~~P~li~~~  184 (246)
T 1dxx_A          137 EKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWN  184 (246)
T ss_dssp             HHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHH
T ss_pred             HHHHHHHHHHHhccCCCCCcCCCcccchhHHHHHHHHHHHCcCccchh
Confidence            46899999942 2 1 3457776 469999999999999999988743

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=82.34  E-value=14  Score=39.64  Aligned_cols=40  Identities=8%  Similarity=0.081  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy11659        363 YKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREK  402 (684)
Q Consensus       363 ~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~  402 (684)
                      +++.+..|+.++......+..|+.-+..+..++..|+.++
T Consensus       115 LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI  154 (562)
T 3ghg_A          115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI  154 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444443

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=82.12  E-value=18  Score=29.16  Aligned_cols=16  Identities=31%  Similarity=0.557  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHh
Q psy11659        450 ELRQKLVRLTHENNML  465 (684)
Q Consensus       450 el~~~l~~Le~Enk~L  465 (684)
                      +|+.++..+..+|..|
T Consensus         4 eLr~qi~~l~~e~~~l   19 (86)
T 3swk_A            4 ELRRQVDQLTNDKARV   19 (86)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHH
Confidence            3444444444444443

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=81.36  E-value=24  Score=29.90  Aligned_cols=18  Identities=22%  Similarity=0.278  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy11659        304 KVEKYEGIIETYKKKAEE  321 (684)
Q Consensus       304 ~~~k~e~~le~~k~klee  321 (684)
                      +..++..+++.||.|+..
T Consensus        11 ~~~~L~~E~e~~k~K~~~   28 (111)
T 2v66_B           11 DNQRLKYEVEALKEKLEH   28 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            455667788888888764

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=81.04  E-value=28  Score=30.45  Aligned_cols=19  Identities=21%  Similarity=0.144  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy11659        395 VTSLQREKEKLIVERDSLK  413 (684)
Q Consensus       395 l~~le~e~e~l~~e~~~L~  413 (684)
                      ...|-.-+-.|..++..++
T Consensus       107 Yq~Ll~vKl~Ld~EIatYR  125 (131)
T 3tnu_A          107 YKILLDVKTRLEQEIATYR  125 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444443

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=80.96  E-value=19  Score=28.59  Aligned_cols=27  Identities=15%  Similarity=0.195  Sum_probs=11.2

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11659        524 KVKIFELQNEIKNLKEQINHQQEEHLE  550 (684)
Q Consensus       524 k~kl~e~~~ele~~r~~l~~le~q~~~  550 (684)
                      |+++.....+.+....++..++.++..
T Consensus         5 kkKm~~lk~e~d~a~~~~~~~e~~l~~   31 (81)
T 1ic2_A            5 KKKMQMLKLDKENALDRAEQAEADKKA   31 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444433333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	684
d1wixa_	164	a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus mu	1e-47

>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: All alpha proteins
fold: CH domain-like
superfamily: Hook domain
family: Hook domain
domain: Hook homolog 1, Hook1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  163 bits (413), Expect = 1e-47
 Identities = 80/156 (51%), Positives = 105/156 (67%), Gaps = 1/156 (0%)

Query: 7   DQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGA 66
               LC+ L+ WLQTF   +P Q +  +T+GV MAQ LHQI   WFSE WL++IK D+G 
Sbjct: 6   SGLPLCDSLIIWLQTFKTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVG- 64

Query: 67  NNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCA 126
           +NWR+K SNLKK+  GI  Y+ E+  Q + E    D+++I E  D  EL RL+QLILGCA
Sbjct: 65  DNWRIKASNLKKVLHGITSYYHEFLGQQISEELIPDLNQITECADPVELGRLLQLILGCA 124

Query: 127 INCNRKQNYITKIMELEESVQQVIMQSIQELENLHG 162
           +NC +KQ +I  IM LEESVQ V+M +IQEL +  G
Sbjct: 125 VNCEKKQEHIKNIMTLEESVQHVVMTAIQELMSKSG 160

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	684
d1wixa_	164	Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId	100.0
d1sh5a1	120	Actin binding domain of plectin {Human (Homo sapie	96.48
d1aoaa1	131	Fimbrin (Plastin), actin-crosslinking domain {Huma	96.36
d1wjoa_	124	Fimbrin (Plastin), actin-crosslinking domain {Huma	96.14
d2qjza1	120	Microtubule-associated protein eb1, N-terminal mic	95.93
d1dxxa1	111	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	95.58
d1bkra_	108	beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}	94.51
d1dxxa2	127	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	93.79
d1aoaa2	116	Fimbrin (Plastin), actin-crosslinking domain {Huma	93.66
d1bhda_	108	Utrophin {Human (Homo sapiens) [TaxId: 9606]}	93.6
d1p2xa_	159	Ras GTPase-activating-like protein rng2 {Fission y	93.45
d1pxya_	500	Fimbrin (Plastin), actin-crosslinking domain {Thal	92.53
d1ujoa_	144	Transgelin {Mouse (Mus musculus) [TaxId: 10090]}	91.08
d1sh5a2	110	Actin binding domain of plectin {Human (Homo sapie	91.07
d1rt8a_	505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	90.2
d1rt8a_	505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	88.72
d1pxya_	500	Fimbrin (Plastin), actin-crosslinking domain {Thal	87.55
d1h67a_	108	Calponin {Chicken (Gallus gallus) [TaxId: 9031]}	82.11

>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: CH domain-like
superfamily: Hook domain
family: Hook domain
domain: Hook homolog 1, Hook1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.7e-46  Score=348.04  Aligned_cols=155  Identities=52%  Similarity=0.883  Sum_probs=149.8

Q ss_pred             ChHHhHHHHHHHHhhcCCCCCCCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHH
Q psy11659          7 DQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDY   86 (684)
Q Consensus         7 ~~~~~~~~l~~W~~tf~~~~~~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y   86 (684)
                      ++..+|+|||.|+|||++..|+.+++||+||++|++||++|||+||+++|+.+++.++++ ||++|++||++|+++|.+|
T Consensus         6 ~~~~l~~aLv~W~~tf~~~~~~~~~~dL~DGv~l~~iL~qIdP~~f~~~~~~~~~~d~~~-nw~lr~~NLk~i~~~i~~Y   84 (164)
T d1wixa_           6 SGLPLCDSLIIWLQTFKTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGD-NWRIKASNLKKVLHGITSY   84 (164)
T ss_dssp             CSCHHHHHHHHHHTTCCCSSCCCSHHHHTTSHHHHHHHHHHCTTTSCHHHHTTCCSGGGG-CSHHHHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHcCCCcccCCHHHHhchHHHHHHHHHhCccccCchhhhcccccccc-cHHHHHHHHHHHHHHHHHH
Confidence            456799999999999999999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             HHHhhcccccCccccchhHHhhcCCHHHHHHHHHHHHHHHhcCCCchhhhHHhHcCCHHHHHHHHHHHHHHhcccC
Q psy11659         87 FQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCNRKQNYITKIMELEESVQQVIMQSIQELENLHG  162 (684)
Q Consensus        87 ~~~~l~~~~~~~~~pd~~~ia~~~d~~el~~ll~lvl~~av~~~~~~~~I~~I~~L~~~~Q~~lm~~Iq~~~~~~~  162 (684)
                      |+++|++.++..++||+..||+++|+.|+++|+.|||||||+|++|++||++||+||+++|++||.+||++++..+
T Consensus        85 y~e~l~~~i~~~~~pd~~~Iae~~d~~el~kLl~LiLg~AV~c~~ke~~I~~I~~Ld~~tQ~~im~~Iqev~~~~~  160 (164)
T d1wixa_          85 YHEFLGQQISEELIPDLNQITECADPVELGRLLQLILGCAVNCEKKQEHIKNIMTLEESVQHVVMTAIQELMSKSG  160 (164)
T ss_dssp             HHTTTCCCCCTTTCCCHHHHHTTCCHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhcCccccccCCCHHHHhcCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHcCCHHHHHHHHHHHHHHHhccC
Confidence            9999999888888999999999999999999999999999999999999999999999999999999999998743

>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0057  Score=51.69  Aligned_cols=86  Identities=15%  Similarity=0.188  Sum_probs=57.5

Q ss_pred             HHHHHHHHhhc-C------CCCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHH
Q psy11659         12 CNILLKWLQTF-T------LVAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGI   83 (684)
Q Consensus        12 ~~~l~~W~~tf-~------~~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i   83 (684)
                      ..++..|+|+. .      .+.++.++ +||.||++|..++..+.|...+.        .++. +..-++.|+..++..+
T Consensus         7 ~k~ft~WiN~~L~~~~~~~~~~~V~dl~~dl~DG~~L~~Lle~l~~~~~~~--------~~~~-~~~~k~eN~~~aL~~~   77 (120)
T d1sh5a1           7 KKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR--------EKGR-MRFHKLQNVQIALDYL   77 (120)
T ss_dssp             HHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCCC--------CCCC-SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccccccccCCCCcchHHHHhccHHHHHHHHHHhCCCcccc--------CCCC-CHHHHHHHHHHHHHHH
Confidence            35799999985 1      23457776 99999999999999999987652        1233 4566788888887644


Q ss_pred             HHHHHHhhcccccCccccchhHHhhcCCHHHH
Q psy11659         84 VDYFQEYFDQALGEFGKVDVHKIVENIDAKEL  115 (684)
Q Consensus        84 ~~y~~~~l~~~~~~~~~pd~~~ia~~~d~~el  115 (684)
                      .+     .+..+.   -+++.-|+. +++.-+
T Consensus        78 ~~-----~~~~l~---~i~~~dI~~-Gn~k~i  100 (120)
T d1sh5a1          78 RH-----RQVKLV---NIRNDDIAD-GNPKLT  100 (120)
T ss_dssp             HH-----TTCCCC---SCCHHHHHT-TCHHHH
T ss_pred             HH-----hccccc---CCcHHhhcc-CcHHHH
Confidence            32     343332   245566765 566543

>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.0023  Score=55.20  Aligned_cols=92  Identities=10%  Similarity=0.135  Sum_probs=59.5

Q ss_pred             hHHHHHHHHhhc-C----------CCCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHH
Q psy11659         11 LCNILLKWLQTF-T----------LVAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKK   78 (684)
Q Consensus        11 ~~~~l~~W~~tf-~----------~~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~   78 (684)
                      -..+++.|+|+. .          .+.++.++ +||.||++|+.++..+.|...+..   .+...+.  +..-++.|+..
T Consensus         5 ek~~f~~WiN~~L~~~~~~~~~~~~~~~v~dL~~Dl~DGv~L~~Lle~l~~~~i~~~---~~~~~p~--~~~~~~~N~~~   79 (131)
T d1aoaa1           5 EKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDER---AINKKKL--TPFIIQENLNL   79 (131)
T ss_dssp             HHHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGG---GSCCSSC--CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCccccccCCCCCcHhHHHHHHhhHHHHHHHHHHHcCCCCcch---hccCCCc--CHHHHHHHHHH
Confidence            356899999984 1          22345553 789999999999999999887652   2222222  55677788888


Q ss_pred             HHHHHHHHHHHhhcccccCccccchhHHhhcCCHHHHH
Q psy11659         79 INEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELA  116 (684)
Q Consensus        79 i~~~i~~y~~~~l~~~~~~~~~pd~~~ia~~~d~~el~  116 (684)
                      +++.+.+     .|..+..   ++..-|+. +++.-+.
T Consensus        80 ~L~~~k~-----~gi~l~~---i~~~DIvd-G~~k~iL  108 (131)
T d1aoaa1          80 ALNSASA-----IGCHVVN---IGAEDLRA-GKPHLVL  108 (131)
T ss_dssp             HHHHHHH-----TTCCCTT---CCHHHHHT-TCHHHHH
T ss_pred             HHHHHHH-----hccccCC---CChhhhhc-CCHHHHH
Confidence            8876543     3543221   34455665 6665543

>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0052  Score=52.26  Aligned_cols=66  Identities=18%  Similarity=0.201  Sum_probs=48.9

Q ss_pred             HHHHHHHhhc-C---CCCCCCCcc--ccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHH
Q psy11659         13 NILLKWLQTF-T---LVAPHQSLA--DITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGI   83 (684)
Q Consensus        13 ~~l~~W~~tf-~---~~~~~~~~~--dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i   83 (684)
                      ..|+.|+|.. .   ...++.++.  ||.||++|..+++.|-|..++-.   .+...+.  +..-+..|++.++..+
T Consensus        10 ~~ll~WvN~~L~~~g~~~~i~~f~d~dl~DG~~L~~Ll~~l~p~~i~~~---~~~~~~~--~~~~~~~N~~~al~~~   81 (124)
T d1wjoa_          10 DIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYD---LVKSGNL--TEDDKHNNAKYAVSMA   81 (124)
T ss_dssp             HHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTT---TSCCSSC--CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCcCcCCccccccHHHHHHHHHHHHhccCCHH---hcccCCc--cHhhHHHHHHHHHHHH
Confidence            5789999975 2   466788985  79999999999999999888632   2322222  4456778888887765

>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Microtubule-associated protein eb1, N-terminal microtubule binding domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0062  Score=50.94  Aligned_cols=101  Identities=18%  Similarity=0.242  Sum_probs=64.6

Q ss_pred             HHHHHHhhcCCCCCCCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHHHhhcc
Q psy11659         14 ILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYFDQ   93 (684)
Q Consensus        14 ~l~~W~~tf~~~~~~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~~~l~~   93 (684)
                      .||.|||+. +..+++.++||.+|++..++++-|-|.-++-   .+++=++.. .+ -.++|++.+-..+     ..+|.
T Consensus         7 eLL~WiN~~-L~~~~~kiEel~tGa~yCQl~d~l~Pg~i~l---~kVkf~a~~-e~-e~~~N~klLq~af-----~kl~I   75 (120)
T d2qjza1           7 DMLAWINES-LQLNLTKIEQLCSGAAYCQFMDMLFPGSIAL---KKVKFQAKL-EH-EYIQNFKILQAGF-----KRMGV   75 (120)
T ss_dssp             HHHHHHHHH-HTCCCCCGGGGGGSHHHHHHHHHHSTTSSCG---GGCCTTCCS-HH-HHHHHHHHHHHHH-----HHHTC
T ss_pred             HHHHHHHHH-hCCChhhHHHhcccHHHHHHHHHHCcCcchH---hhhccCCCC-HH-HHHHHHHHHHHHH-----HHcCC
Confidence            499999987 5678999999999999999999999998764   465433332 22 3456765433322     12342


Q ss_pred             cccCccccchhHHhhcCCHHHHHHHHHHHHH-HHhcCC
Q psy11659         94 ALGEFGKVDVHKIVENIDAKELARLMQLILG-CAINCN  130 (684)
Q Consensus        94 ~~~~~~~pd~~~ia~~~d~~el~~ll~lvl~-~av~~~  130 (684)
                      +    ..+|+..+.+ +...+-..+++.+-. .-.+|+
T Consensus        76 ~----k~i~v~kLik-gk~qdnleflqWfk~f~d~n~~  108 (120)
T d2qjza1          76 D----KIIPVDKLVK-GKFQDNFEFVQWFKKFFDANYD  108 (120)
T ss_dssp             C----CCCCHHHHTT-CCHHHHHHHHHHHHHHHHHHCC
T ss_pred             C----CCCCHHHHhc-ccchhHHHHHHHHHHHHHhcCC
Confidence            2    3477888887 555554444444432 234444

>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.03  Score=46.31  Aligned_cols=89  Identities=16%  Similarity=0.203  Sum_probs=56.7

Q ss_pred             HHHHHHHHhhc-C-CC-CCCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHH
Q psy11659         12 CNILLKWLQTF-T-LV-APHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYF   87 (684)
Q Consensus        12 ~~~l~~W~~tf-~-~~-~~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~   87 (684)
                      ..++..|+|+. . .+ .++.+ ..||.||++|..++..|.|..++..       .+ . +-.-++.|+..+++    |.
T Consensus        10 ~~~ft~WiN~~L~~~~~~~i~nl~~Dl~DG~~L~~Lle~l~~~~~~~~-------~~-~-~r~~~l~N~~~aL~----~~   76 (111)
T d1dxxa1          10 KKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPKE-------KG-S-TRVHALNNVNKALR----VL   76 (111)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCCCCC-------CC-S-SHHHHHHHHHHHHH----HH
T ss_pred             HHHHHHHHHHHccccCCcchhhHHHHhcchHHHHHHHHHHcCCcCCCC-------CC-C-cHhhHHHHHHHHHH----HH
Confidence            46899999984 2 22 34555 6999999999999999999876531       12 2 33456778777776    43


Q ss_pred             HHhhcccccCccccchhHHhhcCCHHHHHHH
Q psy11659         88 QEYFDQALGEFGKVDVHKIVENIDAKELARL  118 (684)
Q Consensus        88 ~~~l~~~~~~~~~pd~~~ia~~~d~~el~~l  118 (684)
                      . ..|..+.   -+.+.-|+. +++.-+..|
T Consensus        77 k-~~~~~~~---~i~~~dI~~-Gn~k~iL~l  102 (111)
T d1dxxa1          77 Q-NNNVDLV---NIGSTDIVD-GNHKLTLGL  102 (111)
T ss_dssp             H-HTTCCCT---TCCHHHHHT-TCHHHHHHH
T ss_pred             H-HhCCccc---CCCHHHHHc-CCHHHHHHH
Confidence            3 2454332   355666765 566544333

>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: beta-spectrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.083  Score=43.24  Aligned_cols=44  Identities=23%  Similarity=0.321  Sum_probs=34.6

Q ss_pred             HHHHHHHHhhcCC---CCCCCCcc-ccccHHHHHHHHHhhCCCcCChh
Q psy11659         12 CNILLKWLQTFTL---VAPHQSLA-DITDGVAMAQALHQIAPEWFSEM   55 (684)
Q Consensus        12 ~~~l~~W~~tf~~---~~~~~~~~-dL~dG~~l~~vl~~idp~~f~~~   55 (684)
                      -++|+.|+|.---   +-++.++. +..||.+|..++|.+.|+.++-.
T Consensus         4 k~~LL~W~~~~~~~y~~v~V~nFs~sw~DG~af~aLi~~~~P~~~~~~   51 (108)
T d1bkra_           4 KDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFD   51 (108)
T ss_dssp             HHHHHHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCCGG
T ss_pred             HHHHHHHHHHHhcCCCCcCcccCCCcccCcHHHHHHHHHHCcCcccHH
Confidence            3689999997532   33566665 67899999999999999998753

>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.79  E-value=0.14  Score=43.12  Aligned_cols=44  Identities=23%  Similarity=0.404  Sum_probs=35.6

Q ss_pred             hHHHHHHHHhhc-C--CCCCCCCcc-ccccHHHHHHHHHhhCCCcCCh
Q psy11659         11 LCNILLKWLQTF-T--LVAPHQSLA-DITDGVAMAQALHQIAPEWFSE   54 (684)
Q Consensus        11 ~~~~l~~W~~tf-~--~~~~~~~~~-dL~dG~~l~~vl~~idp~~f~~   54 (684)
                      ....|+.|+|.- .  .+.++++|. +..||.+|.-++|.+.|+.|+.
T Consensus        17 ~~~~LL~W~~~~~~~y~~v~v~NFs~sw~DG~a~~aLih~~~P~li~~   64 (127)
T d1dxxa2          17 SEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDW   64 (127)
T ss_dssp             HHHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCH
T ss_pred             HHHHHHHHHHHHhccCCCccccCCccccccHHHHHHHHHHHCcccccc
Confidence            356899999953 2  234677775 8999999999999999999885

>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.098  Score=43.25  Aligned_cols=90  Identities=21%  Similarity=0.183  Sum_probs=52.6

Q ss_pred             HHHHHHHHhhc-C-CC-CCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccc--cCCcchhhhhhcHHHHHHHHHH
Q psy11659         12 CNILLKWLQTF-T-LV-APHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTD--IGANNWRLKISNLKKINEGIVD   85 (684)
Q Consensus        12 ~~~l~~W~~tf-~-~~-~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~--~~~~nw~l~~~Nl~~i~~~i~~   85 (684)
                      ...|+.|+|.. . .+ .++.++ .|+.||++|..+++.+.|.-++...   ++.+  ...-...-++.|...+++..  
T Consensus        11 E~~lL~WvN~~l~~~~~~~I~nf~~dl~DG~~L~~Ll~~~~p~~~~~~~---~~~~~~~~~~~~~~~~~n~~~~l~~~--   85 (116)
T d1aoaa2          11 EELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGE---PRIDINMSGFNETDDLKRAESMLQQA--   85 (116)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCSCSSTTTTTSHHHHHHHHHHSCCSCSSSC---CCCCCCCTTTTCSSHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHhccCCCceeeeccccccccHHHHHHHHHHCcccccccc---cccccccCcchHHHHHHHHHHHHHHH--
Confidence            46799999975 1 22 356654 6899999999999999998775321   1111  11102233455555555422  


Q ss_pred             HHHHhhcccccCccccchhHHhhcCCHHH
Q psy11659         86 YFQEYFDQALGEFGKVDVHKIVENIDAKE  114 (684)
Q Consensus        86 y~~~~l~~~~~~~~~pd~~~ia~~~d~~e  114 (684)
                         ..+|.+.    ..++.-|+. +++..
T Consensus        86 ---~~lgi~~----~i~~eDIv~-gn~k~  106 (116)
T d1aoaa2          86 ---DKLGCRQ----FVTPADVVS-GNPKL  106 (116)
T ss_dssp             ---TTTTCCC----SCCHHHHHT-TCHHH
T ss_pred             ---HHhCCCc----CcCHHhCcC-CCHHH
Confidence               3355431    255566764 67643

>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Utrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.28  Score=39.88  Aligned_cols=87  Identities=24%  Similarity=0.291  Sum_probs=53.5

Q ss_pred             hHHHHHHHHhhcC---CCCCCCCcc-ccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHH
Q psy11659         11 LCNILLKWLQTFT---LVAPHQSLA-DITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDY   86 (684)
Q Consensus        11 ~~~~l~~W~~tf~---~~~~~~~~~-dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y   86 (684)
                      -...|+.|+|..-   ..-++.+|. |..||.+|..++|.+.|+.++...+.     +.+     .+.|++..+.    +
T Consensus         6 ~~~~LL~W~~~~~~~y~~v~v~nFs~sw~DG~a~caLih~~~P~~i~~~~l~-----~~~-----~~~~~~~af~----~   71 (108)
T d1bhda_           6 SEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVV-----KMS-----PIERLEHAFS----K   71 (108)
T ss_dssp             HHHHHHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHH-----HSC-----HHHHHHHHHH----H
T ss_pred             HHHHHHHHHHHHhccCCCcCcccCccccccchHHHHHHHHHCccccChhhcC-----cCC-----HHHHHHHHHH----H
Confidence            4578999999542   133566664 78899999999999999999854331     222     2345555444    4


Q ss_pred             HHHhhcccccCccccchhHHh-hcCCHHHH
Q psy11659         87 FQEYFDQALGEFGKVDVHKIV-ENIDAKEL  115 (684)
Q Consensus        87 ~~~~l~~~~~~~~~pd~~~ia-~~~d~~el  115 (684)
                      -.+.+|.+.    +.|+.-+. ..||..-+
T Consensus        72 a~~~lgip~----ll~~~D~~~~~pD~~si   97 (108)
T d1bhda_          72 AQTYLGIEK----LLDPEDVAVRLPDKKSI   97 (108)
T ss_dssp             HHHHHCCCC----CSCHHHHHTSCCCHHHH
T ss_pred             HHHhCCCCC----CCCHHHhccCCCcHHHH
Confidence            455678642    33343343 34554443

>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Ras GTPase-activating-like protein rng2
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.45  E-value=0.13  Score=45.24  Aligned_cols=89  Identities=17%  Similarity=0.270  Sum_probs=53.3

Q ss_pred             HHHHHHHHhhc-CCC-CCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHH
Q psy11659         12 CNILLKWLQTF-TLV-APHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQ   88 (684)
Q Consensus        12 ~~~l~~W~~tf-~~~-~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~   88 (684)
                      ...+-.||+++ ... .++.++ ++|.|||+|.++++.|.|..-.     ++...+.. .+ -++.|+...++.+..   
T Consensus        13 ~~e~~~Wi~~~l~~~~~~~~dl~~~L~dGv~Lc~L~n~l~p~~i~-----~~~~~~~~-~~-~~~eNi~~fL~~~~~---   82 (159)
T d1p2xa_          13 VDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLI-----KIFYSNEL-QF-RHSDNINKFLDFIHG---   82 (159)
T ss_dssp             HHHHHHHHHHHHTSCCCCGGGHHHHTTTSHHHHHHHHHHCTTSCC-----CCCCCSSC-CT-THHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHhCCCCCChhHHHHHHhhHHHHHHHHHHHCCCCCc-----eecCCCcc-hH-HHHHHHHHHHHHHHH---
Confidence            34677899985 433 245565 7799999999999999997643     23333332 22 356777776665543   


Q ss_pred             HhhcccccCccccchhHHhhcCCHHH
Q psy11659         89 EYFDQALGEFGKVDVHKIVENIDAKE  114 (684)
Q Consensus        89 ~~l~~~~~~~~~pd~~~ia~~~d~~e  114 (684)
                        +|.+  ...++...-|.+..+...
T Consensus        83 --~gv~--~~~~f~~~DL~e~~n~~~  104 (159)
T d1p2xa_          83 --IGLP--EIFHFELTDIYEGKNLPK  104 (159)
T ss_dssp             --TTCC--GGGCCCHHHHSSCSCHHH
T ss_pred             --cCCC--ccccCchHHHHcCCCHHH
Confidence              3432  223344444555445433

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.53  E-value=0.18  Score=52.86  Aligned_cols=101  Identities=15%  Similarity=0.142  Sum_probs=66.8

Q ss_pred             hHHHHHHHHhhc-C---CCCCCCCc--cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHH
Q psy11659         11 LCNILLKWLQTF-T---LVAPHQSL--ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIV   84 (684)
Q Consensus        11 ~~~~l~~W~~tf-~---~~~~~~~~--~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~   84 (684)
                      .-..|+.|+|.- .   ...++.+|  .++.||++|..++|.|.|+.++-+.   +  ++++ +...+..|++..+. +.
T Consensus       392 ~~~~LL~W~~~~~~~~~~~~~I~nF~~~s~~dG~a~~~Li~~~~P~~id~~~---~--~~~~-~~~~~~~N~~~a~~-~a  464 (500)
T d1pxya_         392 TDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNL---V--TKGE-TDDEKRLNATYIVS-VA  464 (500)
T ss_dssp             CHHHHHHHHHHHHHTTTCCCCCSSTTCGGGGGCHHHHHHHHHHCGGGCCTTS---C--CCSC-SHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHHhcCCCCccCcCCCCCccccHHHHHHHHhhCCCccCHhh---c--CCCC-CchHHHHHHHHHHH-HH
Confidence            356799999854 2   34578899  3899999999999999999987432   2  1222 33444567776653 11


Q ss_pred             HHHHHhhcccccCccccchhHHhhcCCHHHHHHHHHHHHHHHh
Q psy11659         85 DYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAI  127 (684)
Q Consensus        85 ~y~~~~l~~~~~~~~~pd~~~ia~~~d~~el~~ll~lvl~~av  127 (684)
                          +.+|.|.    +.++.-|. +||+.-+.-.+..+++++.
T Consensus       465 ----~~lGip~----ll~peDv~-~~deksv~tyvs~l~~~~l  498 (500)
T d1pxya_         465 ----RKLGCSV----FLLPEDIV-EVNQKMILILTASIMYWSL  498 (500)
T ss_dssp             ----HHHTCCC----CCCHHHHH-TTCHHHHHHHHHHHHHHHT
T ss_pred             ----HHcCCCc----cCCHHHCC-CCCcchhHHHHHHHHHHHh
Confidence                3468653    23333454 5888877777777777765

>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Transgelin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.08  E-value=0.85  Score=38.91  Aligned_cols=44  Identities=20%  Similarity=0.355  Sum_probs=32.2

Q ss_pred             HhHHHHHHHHhhc-C--CCCCC---CC-ccccccHHHHHHHHHhhCCCcCC
Q psy11659         10 ELCNILLKWLQTF-T--LVAPH---QS-LADITDGVAMAQALHQIAPEWFS   53 (684)
Q Consensus        10 ~~~~~l~~W~~tf-~--~~~~~---~~-~~dL~dG~~l~~vl~~idp~~f~   53 (684)
                      ++...++.||+.. .  +..+.   .+ .+-|.||++|.++++.|.|..-.
T Consensus         9 e~e~~~~~WI~~~~g~~~~~~~~~~~~f~~~L~dGvvLCkL~N~l~P~~i~   59 (144)
T d1ujoa_           9 ELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSK   59 (144)
T ss_dssp             HHHHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTC
T ss_pred             HHHHHHHHHHHHHhCCccCCCCccHHHHHHHHhcChhHHHHHHHHcCCCCC
Confidence            4788999999986 2  22221   12 34599999999999999997543

>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.07  E-value=0.63  Score=37.78  Aligned_cols=79  Identities=14%  Similarity=0.136  Sum_probs=51.1

Q ss_pred             hHHHHHHHHhhcCC---CCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHH
Q psy11659         11 LCNILLKWLQTFTL---VAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDY   86 (684)
Q Consensus        11 ~~~~l~~W~~tf~~---~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y   86 (684)
                      .-++|+.|++..--   +-++.++ .+..||.+|..++|.+.|+.++-.-+.     ..+     .+.|++..+.    +
T Consensus         7 ~k~~LL~W~~~~~~~y~~v~v~nFs~sw~DG~afcaLih~~~P~~id~~~l~-----~~~-----~~~~~~~a~~----~   72 (110)
T d1sh5a2           7 AKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVY-----RQT-----NLENLDQAFS----V   72 (110)
T ss_dssp             HHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHTTCTTTCCHHHHH-----HSC-----HHHHHHHHHH----H
T ss_pred             HHHHHHHHHHHHcCCCCCeeccCCcccccCcHHHHHHHHHHCcccCChhhcC-----ccC-----HHHHHHHHHH----H
Confidence            35789999997521   3356665 568999999999999999998854332     222     3456665544    3


Q ss_pred             HHHhhcccccCccccchhHHh
Q psy11659         87 FQEYFDQALGEFGKVDVHKIV  107 (684)
Q Consensus        87 ~~~~l~~~~~~~~~pd~~~ia  107 (684)
                      -.+.+|.|    ++.++.-+.
T Consensus        73 Ae~~lgip----~ll~~eD~~   89 (110)
T d1sh5a2          73 AERDLGVT----RLLDPEDVD   89 (110)
T ss_dssp             HHHHHCCC----CCCCHHHHS
T ss_pred             HHHcCCCC----CCCCHHHHc
Confidence            34567754    234444454

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=90.20  E-value=0.44  Score=49.84  Aligned_cols=82  Identities=22%  Similarity=0.311  Sum_probs=54.2

Q ss_pred             HHHHHHHHhhc----CCCCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHH
Q psy11659         12 CNILLKWLQTF----TLVAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDY   86 (684)
Q Consensus        12 ~~~l~~W~~tf----~~~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y   86 (684)
                      ..+|+.|+|.-    +...++.+| .|+.||++|+-++|.+.|..++-+-+     +..+     ...|++.++...   
T Consensus       155 ~~~LL~W~~~~~~~~~~~~~v~nf~~~~~dG~a~~~Li~~~~P~l~~~~~~-----~~~~-----~~~n~~~a~~~a---  221 (505)
T d1rt8a_         155 EKILLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSRAPL-----QTTD-----VLQRAEQVLQNA---  221 (505)
T ss_dssp             HHHHHHHHHHHHHHTTCSCCCSCSSGGGTTSHHHHHHHHHHCTTTCCSGGG-----GCCC-----HHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHhhhcCCCceeccCCccccccHHHHHHHHHHCcCccChhhc-----CcCC-----HHHHHHHHHHHH---
Confidence            45799999953    235567777 77999999999999999999875322     1112     345777766532   


Q ss_pred             HHHhhcccccCccccchhHHhhcCCHH
Q psy11659         87 FQEYFDQALGEFGKVDVHKIVENIDAK  113 (684)
Q Consensus        87 ~~~~l~~~~~~~~~pd~~~ia~~~d~~  113 (684)
                        +.+|.|.    +.|+.-|+. ||+.
T Consensus       222 --e~lgi~~----~l~p~Div~-~~~k  241 (505)
T d1rt8a_         222 --EKLDCRK----YLTPTAMVA-GNPK  241 (505)
T ss_dssp             --HTTTCCC----SCCHHHHHT-TCHH
T ss_pred             --HHcCCCc----cCCHHHhcC-CChh
Confidence              3477642    345555654 6653

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=88.72  E-value=0.27  Score=51.58  Aligned_cols=77  Identities=13%  Similarity=0.167  Sum_probs=51.9

Q ss_pred             ChHHhHHHHHHHHhhcCCCCCCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccc-cCCcchhhhhhcHHHHHHHHH
Q psy11659          7 DQSELCNILLKWLQTFTLVAPHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTD-IGANNWRLKISNLKKINEGIV   84 (684)
Q Consensus         7 ~~~~~~~~l~~W~~tf~~~~~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~-~~~~nw~l~~~Nl~~i~~~i~   84 (684)
                      ........+..|+|+.....++.+ ++||.||++|..++..+-|...+-.-...-+.. ++. +-.-++.|+..+++.+.
T Consensus       274 ~~~~~~~~~~~WiNs~l~~~~I~dL~~Dl~DG~~L~~Lle~l~~~~~~~~~~~~~~~~~~~~-~r~~~ieN~~~al~~~~  352 (505)
T d1rt8a_         274 EGEREARVFTLWLNSLDVTPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEM-MRFKAVENCNYAVDLGK  352 (505)
T ss_dssp             HHHHHHHHHHHHHHHTTCSSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGSCCCCTTSCCC-CHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHhccCCCCcHHHHHhccccHHHHHHHHHHhCCCCcCchhcccccccccch-hHHHHHHHHHHHHHHHH
Confidence            345567789999999977777877 599999999999999999876653211111111 111 22346788877777443

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.55  E-value=0.32  Score=50.89  Aligned_cols=103  Identities=15%  Similarity=0.119  Sum_probs=65.5

Q ss_pred             hHHHHHHHHhhcCCCCCCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHHH
Q psy11659         11 LCNILLKWLQTFTLVAPHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQE   89 (684)
Q Consensus        11 ~~~~l~~W~~tf~~~~~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~~   89 (684)
                      -..++..|+|+..++.++.+ +.||.||++|..++..+-|...+..   ..+..+.. ...-++.|+..+++    |..+
T Consensus       271 ~~ktf~~WiNs~~~~~~V~dL~~dl~DG~~L~~Lle~l~~~~~~~~---~~~~~~~~-~~~~ki~N~~~al~----~~~~  342 (500)
T d1pxya_         271 DERCYRLWINSLGIDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWK---HASKPPIK-MPFRKVENCNQVIK----IGKQ  342 (500)
T ss_dssp             HHHHHHHHHTTTTCSSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGG---GCCCSSCC-CHHHHHHHHHHHHH----HHHH
T ss_pred             hHHHHHHHHhccCCCCCcchHHHHHhhhHHHHHHHHHhcCCCCChh---hcCCCccc-chHHHHHHHHHHHH----HHHH
Confidence            45678899999988888888 6999999999999999999776532   12222332 33467788877765    4332


Q ss_pred             hhcccccCccccchhHHhhcCCHHHHH-HHHHHHHHHH
Q psy11659         90 YFDQALGEFGKVDVHKIVENIDAKELA-RLMQLILGCA  126 (684)
Q Consensus        90 ~l~~~~~~~~~pd~~~ia~~~d~~el~-~ll~lvl~~a  126 (684)
                       .|..+..   ++..-|+. +++.-+. -+-++++..-
T Consensus       343 -~gi~l~~---I~~~DI~d-G~~k~iLgLlW~Li~~~~  375 (500)
T d1pxya_         343 -LKFSLVN---VAGNDIVQ-GNKKLILGLLWQLMRFHM  375 (500)
T ss_dssp             -TTCCCCS---CCHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred             -cCCccCC---CChHHhhc-cchhhHHHHHHHHHHHHH
Confidence             4543322   33455655 6665544 3445554443

>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Calponin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=82.11  E-value=0.64  Score=37.64  Aligned_cols=64  Identities=19%  Similarity=0.377  Sum_probs=41.4

Q ss_pred             HHHHHHHhhc-CCCCCCCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHH
Q psy11659         13 NILLKWLQTF-TLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIV   84 (684)
Q Consensus        13 ~~l~~W~~tf-~~~~~~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~   84 (684)
                      .-+..||..+ +..-+.+=.+.|-||++|.++++.|.|....     +|+.. +. .| ....|+...+++..
T Consensus         6 ~e~~~Wie~~~~~~~~~~~~~~L~dGv~LC~L~N~l~pg~i~-----ki~~~-~~-~f-~~~eNI~~FL~~~~   70 (108)
T d1h67a_           6 RQLRVWIEGATGRRIGDNFMDGLKDGVILCELINKLQPGSVQ-----KVNDP-VQ-NW-HKLENIGNFLRAIK   70 (108)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHCSHHHHHHHHHSTTSST-----TCCCT-TS-SH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCchHHHHHHcCchhHHHHHHHHHhcCCC-----ccCCC-cc-hh-HHHHHHHHHHHHHH
Confidence            4578899976 3333334467899999999999999998654     23322 22 34 34466665555443